Query 016399
Match_columns 390
No_of_seqs 197 out of 2051
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 12:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016399.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016399hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 53.7 61 0.0044 27.3 25.5 17 282-298 360-376 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 36.4 89 0.0065 24.3 9.1 28 308-335 95-122 (222)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 30.9 27 0.0019 17.0 2.8 19 202-220 2-20 (27)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 12.9 3.6E+02 0.026 22.5 20.2 24 88-111 198-221 (383)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 10.1 1.1E+02 0.0083 23.1 3.9 23 314-336 83-105 (199)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 4.7 8.6E+02 0.063 20.3 10.5 64 47-110 264-337 (472)
7 d1q90r_ f.23.12.1 (R:) ISP sub 4.3 3.2E+02 0.024 14.7 3.1 28 78-105 5-32 (39)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 3.6 3.5E+02 0.025 14.0 2.7 20 200-219 16-35 (37)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 3.3 9.6E+02 0.07 18.7 18.8 10 46-55 54-63 (447)
10 d1vf5c3 f.23.23.1 (C:250-286) 3.3 4E+02 0.029 14.1 3.4 25 200-224 4-28 (37)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=53.73 E-value=61 Score=27.28 Aligned_cols=17 Identities=0% Similarity=0.005 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhcCCcee
Q 016399 282 IAFAVQIWCIDRGGPVF 298 (390)
Q Consensus 282 ~~~~~~~~a~~~~~~~~ 298 (390)
.....+....+..+...
T Consensus 360 ~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 360 PVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHcCHHH
Confidence 33344455555555543
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=36.41 E-value=89 Score=24.26 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHH
Q 016399 308 LVVAIMASFALGEEFYLGGIIGAVLIVV 335 (390)
Q Consensus 308 v~~~l~~~~~~~e~~~~~~~iG~~li~~ 335 (390)
+.+.+.+..+.+.+++....+|.++.+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3445556667899999988888776443
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=30.95 E-value=27 Score=17.03 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 016399 202 TLGCVYLIGHCLSWSGWLV 220 (390)
Q Consensus 202 ~~G~l~~l~s~~~~a~~~v 220 (390)
.+|.+.+-+++++|+.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 4688888899999998754
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=12.88 E-value=3.6e+02 Score=22.55 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC
Q 016399 88 FILLALVGITANQGFYLLGLENTS 111 (390)
Q Consensus 88 ~~~~g~~~~~~~~~~~~~al~~~~ 111 (390)
+..+|.+-.-..+..++-+-....
T Consensus 198 ~~~lG~~iLw~gW~gFN~gs~~~~ 221 (383)
T d1u7ga_ 198 MVFTGTAILYIGWFGFNAGSAGTA 221 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSS
T ss_pred hhhHHHHHHHHHHHHhcccccccc
Confidence 344555545567767776655443
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.12 E-value=1.1e+02 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=14.4
Q ss_pred HHHHhCCCchhhHHHHHHHHHHH
Q 016399 314 ASFALGEEFYLGGIIGAVLIVVG 336 (390)
Q Consensus 314 ~~~~~~e~~~~~~~iG~~li~~g 336 (390)
...++|.+++.....+..+.+..
T Consensus 83 ~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 83 VLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH
T ss_pred HhhcCCCchHHHHHHHHHHHHHH
Confidence 34567777777766666654444
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.68 E-value=8.6e+02 Score=20.27 Aligned_cols=64 Identities=6% Similarity=0.024 Sum_probs=31.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhh------hhcc----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016399 47 GISKLVFPVYRNIIAFLLLLPFAYF------LEKK----ERPAMTLNFALQFILLALVGITANQGFYLLGLENT 110 (390)
Q Consensus 47 ~~~~~~~~~~r~~~~~l~l~~~~~~------~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 110 (390)
.++|.++.+...+.-.+..+.+..= .+++ +.+..+++.+...+..|..-.......+++...+.
T Consensus 264 pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 337 (472)
T d1wpga4 264 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 337 (472)
T ss_dssp SCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667777776665544444433320 1111 11234555556555555554445555566655544
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.27 E-value=3.2e+02 Score=14.68 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016399 78 PAMTLNFALQFILLALVGITANQGFYLL 105 (390)
Q Consensus 78 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 105 (390)
+...|++..-++..|.++......++=+
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~py 32 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLALGY 32 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhccce
Confidence 4455677777777776654444444333
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.61 E-value=3.5e+02 Score=14.04 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=13.6
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 016399 200 NWTLGCVYLIGHCLSWSGWL 219 (390)
Q Consensus 200 ~~~~G~l~~l~s~~~~a~~~ 219 (390)
+.-+|.++...-++.++-|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34578887777777777664
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.29 E-value=9.6e+02 Score=18.66 Aligned_cols=10 Identities=20% Similarity=0.159 Sum_probs=5.2
Q ss_pred cCCCchHHHH
Q 016399 46 MGISKLVFPV 55 (390)
Q Consensus 46 ~~~~~~~~~~ 55 (390)
.++++.+...
T Consensus 54 ~g~s~~~~g~ 63 (447)
T d1pw4a_ 54 QGFSRGDLGF 63 (447)
T ss_dssp STTCSSCHHH
T ss_pred hCcCHHHHHH
Confidence 3566555443
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.26 E-value=4e+02 Score=14.06 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 016399 200 NWTLGCVYLIGHCLSWSGWLVMQAP 224 (390)
Q Consensus 200 ~~~~G~l~~l~s~~~~a~~~v~~k~ 224 (390)
....|.+..+.+.+..-+..++-||
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVlKKK 28 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLILKKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665444
Done!