BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016400
(390 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
Length = 349
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 126/316 (39%), Gaps = 39/316 (12%)
Query: 32 VDEVLNGQSERCLENFRMD--------------KKVFYKLCDILQSKGLLRHTNR---IK 74
D +L G+ R L+ F++D ++ Y L ++L + L R T R I
Sbjct: 10 CDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGAS-LSRPTQRSRAIS 68
Query: 75 IEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVP 133
E Q LA F + +TR + + S ++SR NV A++ + F P +
Sbjct: 69 PETQILAALGFYTSGSFQTR-MGDAIGISQASMSRCVANVTEALVERASQFIHFPADEAA 127
Query: 134 PEISLDPRLYPY--FKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKF 191
+ SL Y +GAVD IH+ + E + N+ GL S N L C
Sbjct: 128 IQ-SLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLVVCDIRGAL 186
Query: 192 HYVLAGWEGSASDLRVL-NSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTN 250
V W GS D VL S+L+ + + +P+ + L D+ + F+ + H
Sbjct: 187 MTVETSWPGSLQDCAVLQQSSLSSQFETGMPKDSWLLGDSSF-----FLHTWLLTPLHIP 241
Query: 251 QTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPIL---LSAPPYPLQTQVKLVVA 307
+T Y +N+ HS + ++ L RF L A Y + +++A
Sbjct: 242 ETPAEYR-------YNRAHSATHSVIEKTLRTLCCRFRCLDGSKGALQYSPEKSSHIILA 294
Query: 308 ACALHNYIQREKPDDW 323
C LHN D W
Sbjct: 295 CCVLHNISLEHGMDVW 310
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
Length = 349
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 125/316 (39%), Gaps = 39/316 (12%)
Query: 32 VDEVLNGQSERCLENFRMD--------------KKVFYKLCDILQSKGLLRHTNR---IK 74
D +L G+ R L+ F++D ++ Y L ++L + L R T R I
Sbjct: 10 CDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGAN-LSRPTQRSRAIS 68
Query: 75 IEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVP 133
E Q LA F + +TR + + S ++SR NV A++ + F + P +
Sbjct: 69 PETQVLAALGFYTSGSFQTR-MGDAIGISQASMSRCVANVTEALVERASQFIRFPADEAS 127
Query: 134 PEISLDPRLYPY--FKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKF 191
+ +L Y +G VD IH+ + E + N+ GL S N L C
Sbjct: 128 IQ-ALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGTL 186
Query: 192 HYVLAGWEGSASDLRVLN-SALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTN 250
V W GS D VL S+L+ + + + + + L D+ + F+ + H
Sbjct: 187 MTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWLLGDSSF-----FLRTWLMTPLHIP 241
Query: 251 QTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPIL---LSAPPYPLQTQVKLVVA 307
+T Y +N HS + ++ F L RF L A Y + +++A
Sbjct: 242 ETPAEYR-------YNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILA 294
Query: 308 ACALHNYIQREKPDDW 323
C LHN D W
Sbjct: 295 CCVLHNISLEHGMDVW 310
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1
Length = 349
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 124/316 (39%), Gaps = 39/316 (12%)
Query: 32 VDEVLNGQSERCLENFRMD--------------KKVFYKLCDILQSKGLLRHTNR---IK 74
D +L G+ R L+ F++D ++ Y L ++L + L R T R I
Sbjct: 10 CDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGAS-LSRPTQRSRAIS 68
Query: 75 IEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVP 133
E Q LA F + +TR + + S ++SR NV A++ + F P +
Sbjct: 69 PETQILAALGFYTSGSFQTR-MGDAIGISQASMSRCVANVTEALVERASQFIHFPADEAS 127
Query: 134 PEISLDPRLYPY--FKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKF 191
+ +L Y +G VD +H+ + E + N+ GL S N L C
Sbjct: 128 VQ-ALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGAL 186
Query: 192 HYVLAGWEGSASDLRVLN-SALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTN 250
V W GS D VL S+L+ + + + + + L D+ + F+ + H
Sbjct: 187 MTVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSF-----FLRTWLMTPLHIP 241
Query: 251 QTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPIL---LSAPPYPLQTQVKLVVA 307
+T Y +N HS + ++ F L RF L A Y + +++A
Sbjct: 242 ETPAEYR-------YNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILA 294
Query: 308 ACALHNYIQREKPDDW 323
C LHN D W
Sbjct: 295 CCVLHNISLEHGMDVW 310
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
Length = 349
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 112/306 (36%), Gaps = 44/306 (14%)
Query: 44 LENFRMDKKVFYKLCDILQSKGLLRHTNRIKI----EEQLAIFMFIVGHNLRTRAVQELF 99
L F ++ Y L ++L+ LLR T R + + LA F + +++ + +
Sbjct: 36 LNTFGFPREFIYYLVELLKD-SLLRRTQRSRAISPDVQILAALGFYTSGSFQSK-MGDAI 93
Query: 100 RYSGETISRHFNNVLNAIMAISLDFFQPPGPDVPPEISLDPRLYPYFKD----------C 149
S ++SR +NV A++ + +F + D FKD
Sbjct: 94 GISQASMSRCVSNVTKALIEKAPEFIG---------FTRDEATKQQFKDEFYRIAGIPNV 144
Query: 150 VGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVL- 208
G VD HI + + + NK G S N C W GS +D V
Sbjct: 145 TGVVDCAHIAIKAPNADDSSYVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFK 204
Query: 209 --NSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYHPQDAKELFN 266
N A + EG + L DN+Y + P Q+ P D + +N
Sbjct: 205 QSNVAKLFEEQENDDEG-WLLGDNRYPLKKWLMTPVQSPE----------SPADYR--YN 251
Query: 267 QRHSLLRNATDRIFGALKERFPILLSAPPYPLQTQVK---LVVAACALHNYIQREKPDDW 323
H+ DR F A++ RF L A Y + K ++ A C LHN + D W
Sbjct: 252 LAHTTTHEIVDRTFRAIQTRFRCLDGAKGYLQYSPEKCSHIIQACCVLHNISLQSGLDAW 311
Query: 324 LFRMYE 329
F E
Sbjct: 312 TFERTE 317
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1
Length = 347
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 118/314 (37%), Gaps = 55/314 (17%)
Query: 32 VDEVLNGQSERCLENFRMD--------------KKVFYKLCDILQSKGLLRHTNR---IK 74
D +L G+ R L+ FR+D + L D+L + L R T+R I
Sbjct: 10 CDLLLYGRGHRTLDRFRLDDVTDDYLVTTYGFPRPFIDYLVDLLGAS-LSRPTHRSRAIS 68
Query: 75 IEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVP 133
E Q +A F + +TR + + S ++SR NV A++ + F P
Sbjct: 69 PETQIMAALGFYTSGSFQTR-MGDTIGISQASMSRCVTNVTEALVERASQFISFPR---- 123
Query: 134 PEISLDPRLYPYFKD----------CVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLA 183
D R KD +G VD + + E + N GL S N L
Sbjct: 124 -----DERSVQGLKDEFYNLAGVPGVLGVVDCTQVNIKAPNSEDLSYVNSRGLHSLNCLL 178
Query: 184 ACSFDLKFHYVLAGWEGSASDLRVLN-SALTRRNKLQVPEGKYYLVDNKYANMPGFIAPY 242
C + GS D VL+ S L+ + ++ + + L DN + P + P
Sbjct: 179 VCDARGSLLWAETSRLGSMQDNAVLHQSELSGLFETKMHKQGWLLADNAFILRPWLMTPV 238
Query: 243 QAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPIL---LSAPPYPLQ 299
Q P D + +N H+ + +R +L+ RF L + Y +
Sbjct: 239 QIPE----------SPSDYR--YNMAHTATHSVMERTQRSLRLRFRCLDGSRATLQYSPE 286
Query: 300 TQVKLVVAACALHN 313
++V+A C LHN
Sbjct: 287 KSAQIVLACCILHN 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,245,532
Number of Sequences: 539616
Number of extensions: 6368615
Number of successful extensions: 13552
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13549
Number of HSP's gapped (non-prelim): 5
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)