Citrus Sinensis ID: 016404
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZQ0 | 392 | Probable nucleoredoxin 3 | yes | no | 0.984 | 0.979 | 0.680 | 1e-161 | |
| Q7XPE8 | 471 | Probable nucleoredoxin 3 | no | no | 0.874 | 0.723 | 0.562 | 1e-112 | |
| O80763 | 578 | Probable nucleoredoxin 1 | no | no | 0.935 | 0.631 | 0.415 | 2e-87 | |
| Q7Y0E8 | 569 | Probable nucleoredoxin 1- | no | no | 0.956 | 0.655 | 0.387 | 1e-76 | |
| Q7Y0F2 | 581 | Probable nucleoredoxin 1- | no | no | 0.951 | 0.638 | 0.381 | 8e-75 | |
| Q0JIL1 | 394 | Probable nucleoredoxin 2 | no | no | 0.905 | 0.895 | 0.383 | 4e-72 | |
| Q6GM16 | 414 | Nucleoredoxin OS=Xenopus | N/A | no | 0.651 | 0.613 | 0.340 | 1e-36 | |
| Q503L9 | 418 | Nucleoredoxin OS=Danio re | yes | no | 0.733 | 0.684 | 0.326 | 2e-36 | |
| Q6DKJ4 | 435 | Nucleoredoxin OS=Homo sap | yes | no | 0.764 | 0.685 | 0.304 | 3e-35 | |
| A6QLU8 | 435 | Nucleoredoxin OS=Bos taur | yes | no | 0.679 | 0.609 | 0.317 | 3e-35 |
| >sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 568 bits (1464), Expect = e-161, Method: Compositional matrix adjust.
Identities = 262/385 (68%), Positives = 320/385 (83%), Gaps = 1/385 (0%)
Query: 1 MARDND-QSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKT 59
MA D Q KF +S D ++LA+EG+EFLLS G+VPL GKTICLFFSA WCRPCK
Sbjct: 1 MAVSADYQVKFPESGDLYSILAAEGIEFLLSHSGEVPLEYIHGKTICLFFSAIWCRPCKD 60
Query: 60 FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119
FTP+L++LY+ L+ RG ELE+IF+SFDHD F EHF CMPWLAVPF+ +L KLR +Y
Sbjct: 61 FTPELIKLYENLQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYG 120
Query: 120 VDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLL 179
+ RIPSL+PL SD + ED+IGLIEDYG++A+PFT+KR+EELKAIDDSKR GG+LE+LL
Sbjct: 121 ISRIPSLVPLYSDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLL 180
Query: 180 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 239
E R+YV++R+ K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL TT F
Sbjct: 181 THESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSF 240
Query: 240 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299
EV+L+STDRD +EF++N + MPWLAIPYEDR RQDLCRIFN+K IPALV+IGP+ KT++T
Sbjct: 241 EVILISTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTT 300
Query: 300 NGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDC 359
N +EM+SLYG+++FPFTESRI E++ LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD
Sbjct: 301 NAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDF 360
Query: 360 CKMRGRFWAFSCDVCNYDLHPKCVE 384
CK +GRFWAFSC+ C+YDLHP CVE
Sbjct: 361 CKKQGRFWAFSCNACDYDLHPTCVE 385
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8 |
| >sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/345 (56%), Positives = 251/345 (72%), Gaps = 4/345 (1%)
Query: 16 FLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR 74
++++ GV LLS GK +PLSS GK ICLFFSA+WCRPC+ FTP+L+Q+Y LR
Sbjct: 14 YVSIPQLAGVGTLLSNGGKEIPLSSIEGKRICLFFSAHWCRPCRNFTPKLLQIYRKLRNT 73
Query: 75 GTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLA---S 131
+E+IFIS D DE F ++FK MPWLA+PFD L +KL +++ ++ IP+LIPL+ S
Sbjct: 74 CKNMEIIFISLDRDEISFLDYFKGMPWLALPFDTGLRQKLCVQFDIEHIPALIPLSTTLS 133
Query: 132 DGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRD 191
G +EED + L+E+YG DAYPF KRR EL+ +DD++RQGG L QLL + R+YV+S D
Sbjct: 134 HGFRVEEDAVKLVEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISAD 193
Query: 192 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 251
K +S+L GKTIGLYFGAHWCPPCR+FT QL E Y+ELK F+V+ +S DR+ +
Sbjct: 194 GIKTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEE 253
Query: 252 EFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAK 311
EF + S MPW AIPY D Q+L RIF IKGIP L+++GPDGK T+G+ +IS YGA
Sbjct: 254 EFQASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAM 313
Query: 312 AFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 356
AFPFTESR E+E LKKE D+LP V+D +HEHEL+LDMAKAY+
Sbjct: 314 AFPFTESRAYELEEVLKKERDSLPHRVRDHRHEHELELDMAKAYL 358
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (827), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 227/368 (61%), Gaps = 3/368 (0%)
Query: 18 TVLASEGVEFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT 76
+VL + +F++S G KVP+S GKTI L FS R C TP+LV+ Y L+
Sbjct: 178 SVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKE 237
Query: 77 ELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136
+ E++ IS + DE F + FK PWLA+PF++ KL + + +P+L+ L DG
Sbjct: 238 DFEIVLISLEDDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTR 297
Query: 137 EEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT 196
++ I+DYG AYPFT ++ +ELK ++ +K + LE LL +YVL +D K+
Sbjct: 298 HSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKVL 357
Query: 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256
VS+L GKTI +YF AHWCPPCR+FT +L+EVY ++K N FE++ +S+DRD + FD
Sbjct: 358 VSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKER-NEAFELIFISSDRDQESFDEY 416
Query: 257 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFT 316
+S MPWLA+P+ D + L + F + GIP L +GP G+T++ ++++ +GA A+PFT
Sbjct: 417 YSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFT 476
Query: 317 ESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFWAFSCDVCN 375
E R+ EIE + P++VK V H EHEL+L + Y CD C+ G W++ CD C+
Sbjct: 477 EERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECD 536
Query: 376 YDLHPKCV 383
+DLH KC
Sbjct: 537 FDLHAKCA 544
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Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/379 (38%), Positives = 223/379 (58%), Gaps = 6/379 (1%)
Query: 12 DSSDFLTVLASEGVEFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
D+ +VL + ++LLS +G +VP+S GK + L F N P FT L + Y+
Sbjct: 165 DNQTVQSVLGTPTRDYLLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEK 224
Query: 71 LRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLA 130
L+ G + EV+ +S D DE E F MPWLA+P ++ + +KL + + +P+L+ +
Sbjct: 225 LKEVGEKFEVVAVSLDSDEELSNESFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIG 284
Query: 131 SDGTLIEEDLIGLIEDYGADA---YPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYV 187
DG + ++ +I+++G DA +PFT ++ E L +K + LE LL I D+V
Sbjct: 285 PDGKTLNNNVADIIDEHGQDAWEGFPFTAEKMEILAEKAKAKAELQTLESLLVIGDLDFV 344
Query: 188 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247
L +D K+ VSEL GKT+ LYF A WC PCR+F +L++ YN++K N FE++ +S+D
Sbjct: 345 LGKDGAKVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHND-FEIIFISSD 403
Query: 248 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL 307
RD +D S MPWLA+P D +Q L + F ++GIP+LV IG DG+T++ + K ++
Sbjct: 404 RDQSSYDEFFSGMPWLALPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTA 463
Query: 308 YGAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRF 366
+GA AFPFTE R+ E+E + + P ++K H EHEL L Y CD C G
Sbjct: 464 HGADAFPFTEERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSS 523
Query: 367 WAFSCDVCNYDLHPKCVEG 385
W++ C C++DLHPKC G
Sbjct: 524 WSYRCRECDFDLHPKCALG 542
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 217/380 (57%), Gaps = 9/380 (2%)
Query: 12 DSSDFLTVLASEGVEFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
D+ ++ + ++L++ +G KVP+S GK + L F N P FT L ++Y+
Sbjct: 172 DNQTIHSLFGTPTRDYLITNKGDKVPISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEK 231
Query: 71 LRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLA 130
L+ G + EV+ +S D DE F E F MPWLA+P + + +KL + + +P L+ +
Sbjct: 232 LKAVGEKFEVVMVSLDGDEESFNESFADMPWLAIPQGDKMCEKLARYFELSGLPMLVLIG 291
Query: 131 SDGTLIEEDLIGLIEDYGADA---YPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYV 187
DG + +D+ +I+++G DA +PF+ ++ E L +K + LE LL D+V
Sbjct: 292 PDGKTLNDDIADIIDEHGPDAWEGFPFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFV 351
Query: 188 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247
L +D K+ VSEL GKT+ LYF A WCPPCR+F +L+ YN++K N FE+V +S+D
Sbjct: 352 LGKDGAKVPVSELVGKTVLLYFSAKWCPPCRAFLPKLVNEYNKIKEKHND-FEIVFISSD 410
Query: 248 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL 307
R+ +D S MPWLA+P D +Q L +IF I GIP+LV IGPDGKT++ + K +
Sbjct: 411 REQSSYDEFFSGMPWLALPLGDERKQQLSKIFKITGIPSLVAIGPDGKTVTKDAKTPLVA 470
Query: 308 YGAKAFPFT----ESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMR 363
+GA AFPFT + E E + P ++K H+HEL L Y CD C
Sbjct: 471 HGADAFPFTEEKLQELEKEKEKKINDMAKGWPEKLKHDLHDHELVLTRCTTYGCDGCDEM 530
Query: 364 GRFWAFSCDVCNYDLHPKCV 383
G W++ C C++DLHPKC
Sbjct: 531 GDSWSYRCKECDFDLHPKCA 550
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (695), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 139/362 (38%), Positives = 213/362 (58%), Gaps = 9/362 (2%)
Query: 28 LLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
L+S G +V +S GK I L+F+ANW C+ FTP L Y L+ G EVIF+S D
Sbjct: 26 LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCD 85
Query: 87 HDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIE 145
+ FE + MPW AVPF D K+L R++V+ IP L+ LA +G +++ D + L+
Sbjct: 86 ENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAPNGEVVQPDAVELVH 145
Query: 146 DYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTI 205
YG A+PFT R EL+A + K LE++ ++ G+DYV + ++ +S L GKT+
Sbjct: 146 RYGDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYV-NGSQEQVPISSLVGKTV 204
Query: 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAI 265
GLYF AH C PC FT++L +Y+ LK A FE++ + D++ + + S MPWLA+
Sbjct: 205 GLYFSAHRCAPCIKFTAKLAAIYSNLKGKAED-FEIIYIPMDKEEDGYLRSCSDMPWLAL 263
Query: 266 PYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE 324
PY+D A L R F+++ IP LV++GPDGKT++ G+ +++LY AFPFT+ +I ++
Sbjct: 264 PYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFPFTDEQIRLLQ 323
Query: 325 TALKKEGDALPREVKDVKHEHELKLDMAKA----YVCDCCKMRGRFWAFSCDVCNYDLHP 380
++ P ++ H HEL + K+ Y+C C +G WA+ C C Y++H
Sbjct: 324 EMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWAYQCIACGYEIHL 383
Query: 381 KC 382
+C
Sbjct: 384 RC 385
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Probable thiol-disulfide oxidoreductase that may participate in various redox reactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q6GM16|NXN_XENLA Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 148/285 (51%), Gaps = 31/285 (10%)
Query: 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104
I L F PC P L Y R R LE++F+S D D+ ++ K MPWLA+
Sbjct: 35 IGLLFGCGMSAPCLQLLPGLKDFYCKTRDR---LEIVFVSSDPDQKKWQLFVKDMPWLAL 91
Query: 105 PFDETLHKKLRI--RYRVDRIPSLIPLASDG--TLIEEDLIGLIEDYGADAYPFTRKRRE 160
P+ E H+KL++ ++R+ IPSLI + + T+ L+ + +D +P+ K
Sbjct: 92 PYQEK-HRKLKLWNKFRISNIPSLIFIEASTVKTVCRNGLLLVKDDPEGLEFPWGPKPFC 150
Query: 161 ELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSF 220
E+ A G L + + + S L G +G+YF A+WCPPCRS
Sbjct: 151 EVIA--------GPL------------IRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSL 190
Query: 221 TSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIF 279
T L+E Y ++K + FE+VLVS DR + F S MPWLA+PY D AR+ L R++
Sbjct: 191 TRVLVESYRKIKESGQK-FEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLY 249
Query: 280 NIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAEI 323
I+GIP L+++ P G+ I+ G+ E++ K FP+ + E+
Sbjct: 250 GIQGIPNLIILDPKGEVITRQGRVEVLRDIDCKEFPWHPKPVVEL 294
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Functions as a redox-dependent negative regulator of the Wnt signaling pathway. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q503L9|NXN_DANRE Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 165/319 (51%), Gaps = 33/319 (10%)
Query: 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGT---ELEVIFISFDHDENGFEEHFKCMPWLAV 104
+F + PCK F L + Y + +LE++FIS D D+ +++ + M W A+
Sbjct: 36 YFGCSLNGPCKQFNASLTEFYSKFKKSSEHKDKLEIVFISSDQDQKQWQDFLQEMQWPAL 95
Query: 105 PFDETLHKKLRI--RYRVDRIPSLIPL-ASDGTLI-EEDLIGLIEDYGADAYPFTRKRRE 160
PF + HKK+++ +Y+V IPSL+ + A+ G ++ L+ + +D +P+ K
Sbjct: 96 PFKDR-HKKMKLWNKYKVTSIPSLVFIDAATGKVVCRNGLLVVRDDPKGLEFPWGPKPFA 154
Query: 161 ELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVS-ELAGKTIGLYFGAHWCPPCRS 219
E+ + G L R++R+ T S L G +G+YF AHWCPPCRS
Sbjct: 155 EV------------------VSGP---LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRS 193
Query: 220 FTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRI 278
T L+E Y ++K T FE+V VS DR + F S MPWLA+PY D AR+ L R+
Sbjct: 194 LTRVLVESYRKVKETGQK-FEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRL 252
Query: 279 FNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAEIETALKKEGDALPRE 337
+ I+GIP L+L+ +G I+ G+ E+++ FP+ + E+ + + P
Sbjct: 253 YGIQGIPTLILLDTEGHMITRQGRVEILNDPDCGLFPWHPRPVLELSESNAVQLHEGPCL 312
Query: 338 VKDVKHEHELKLDMAKAYV 356
V V E E +LD AK +
Sbjct: 313 VLFVDAEEEGELDPAKELI 331
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway. Danio rerio (taxid: 7955) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 170/345 (49%), Gaps = 47/345 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLR-------------------TRGTE 77
L + G + L+F + PC + L Y LR
Sbjct: 26 LGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGAGAGAAAEPEPRRR 85
Query: 78 LEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI--RYRVDRIPSLIPL-ASDGT 134
LE++F+S D D+ +++ + MPWLA+P+ E H+KL++ +YR+ IPSLI L A+ G
Sbjct: 86 LEIVFVSSDQDQRQWQDFVRDMPWLALPYKEK-HRKLKLWNKYRISNIPSLIFLDATTGK 144
Query: 135 LI-EEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHR 193
++ L+ + +D +P+ K E+ A G L L + +
Sbjct: 145 VVCRNGLLVIRDDPEGLEFPWGPKPFREVIA--------GPL------------LRNNGQ 184
Query: 194 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253
+ S L G +G+YF AHWCPPCRS T L+E Y ++K A FE++ VS DR + F
Sbjct: 185 SLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIK-EAGQNFEIIFVSADRSEESF 243
Query: 254 DLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAK 311
S MPWLA+PY D AR+ L R++ I+GIP L+++ P G+ I+ G+ E+++ +
Sbjct: 244 KQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDEDCR 303
Query: 312 AFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 356
FP+ + E+ + + + P V V E + + + AK +
Sbjct: 304 EFPWHPKPVLELSDSNAAQLNEGPCLVLFVDSEDDGESEAAKQLI 348
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
| >sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 157/312 (50%), Gaps = 47/312 (15%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-------------------E 77
L++ G + L+F + PC + L Y LR
Sbjct: 26 LAARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGPGAGASAEPEPRRR 85
Query: 78 LEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI--RYRVDRIPSLIPL-ASDGT 134
LE++F+S D D+ +++ + MPWLA+P+ E H+KL++ +YR+ IPSLI L A+ G
Sbjct: 86 LEIVFVSSDQDQRQWQDFVRDMPWLALPYKEK-HRKLKLWNKYRISNIPSLIFLDATSGK 144
Query: 135 LI-EEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHR 193
++ L+ + +D +P+ K E+ A G L L + +
Sbjct: 145 VVCRNGLLVIRDDPEGLEFPWGPKPFREVIA--------GPL------------LRSNGQ 184
Query: 194 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253
+ S L G +G+YF AHWCPPCRS T L+E Y ++K A FE++ VS DR F
Sbjct: 185 SLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIK-EAGQKFEIIFVSADRSEDSF 243
Query: 254 DLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAK 311
S MPWLA+PY D AR+ L R++ I+GIP L+++ P G+ I+ G+ E+++ +
Sbjct: 244 KQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCR 303
Query: 312 AFPFTESRIAEI 323
FP+ + E+
Sbjct: 304 GFPWHPKPVLEL 315
|
Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| 224121244 | 401 | predicted protein [Populus trichocarpa] | 0.984 | 0.957 | 0.721 | 1e-169 | |
| 296081801 | 1126 | unnamed protein product [Vitis vinifera] | 0.958 | 0.332 | 0.740 | 1e-168 | |
| 297798848 | 392 | predicted protein [Arabidopsis lyrata su | 0.984 | 0.979 | 0.690 | 1e-160 | |
| 18417767 | 392 | putative nucleoredoxin 3 [Arabidopsis th | 0.984 | 0.979 | 0.680 | 1e-159 | |
| 356515549 | 389 | PREDICTED: probable nucleoredoxin 3-like | 0.992 | 0.994 | 0.677 | 1e-158 | |
| 356507842 | 389 | PREDICTED: probable nucleoredoxin 3-like | 0.992 | 0.994 | 0.671 | 1e-155 | |
| 357466557 | 392 | Nucleoredoxin [Medicago truncatula] gi|3 | 0.992 | 0.987 | 0.669 | 1e-155 | |
| 449499528 | 391 | PREDICTED: probable nucleoredoxin 3-like | 0.964 | 0.961 | 0.614 | 1e-133 | |
| 449442006 | 391 | PREDICTED: probable nucleoredoxin 3-like | 0.964 | 0.961 | 0.609 | 1e-132 | |
| 242077118 | 389 | hypothetical protein SORBIDRAFT_06g02795 | 0.923 | 0.925 | 0.596 | 1e-130 |
| >gi|224121244|ref|XP_002330779.1| predicted protein [Populus trichocarpa] gi|222872581|gb|EEF09712.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 277/384 (72%), Positives = 330/384 (85%)
Query: 1 MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
MA + Q+KF++ SDF+ +L+S+G+++LLS +GKVPLSSC K ICLFFSANWCRPCK F
Sbjct: 1 MAGLDGQAKFVEGSDFVAILSSQGIDYLLSGEGKVPLSSCDCKVICLFFSANWCRPCKAF 60
Query: 61 TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120
PQLV++Y++LR G +LE++FISFD DE+GF+EHFKCMPWLAVPF+ LH+ L Y V
Sbjct: 61 APQLVKIYNSLRGTGKKLEIVFISFDRDEDGFKEHFKCMPWLAVPFEVNLHRHLSDIYHV 120
Query: 121 DRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLA 180
+RIPS I L SDG +EED+IGLIED+GA+A+PFTR+R +EL++IDD+KRQGGKL+QLLA
Sbjct: 121 NRIPSCISLGSDGISVEEDMIGLIEDFGAEAFPFTRERFDELRSIDDAKRQGGKLQQLLA 180
Query: 181 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 240
EGR+YVLS D RKI VSEL GKTIGLYFGAHWCPP R+FT+QLI+ YNE+ TT + CFE
Sbjct: 181 HEGRNYVLSGDTRKIFVSELVGKTIGLYFGAHWCPPSRAFTTQLIQNYNEIITTNDGCFE 240
Query: 241 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300
++LVSTDRD KEF+ N S MPWLAIPYEDR RQDLCRIFNIKGIPALV+IG DGK I T+
Sbjct: 241 IILVSTDRDLKEFNTNLSNMPWLAIPYEDRTRQDLCRIFNIKGIPALVIIGQDGKIIRTD 300
Query: 301 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 360
GK MISLYGAKAFPFTESRI EIE LK+EGDALPR+VKD+KH+H LKLDMAKAYVCDCC
Sbjct: 301 GKAMISLYGAKAFPFTESRITEIEATLKEEGDALPRQVKDIKHQHALKLDMAKAYVCDCC 360
Query: 361 KMRGRFWAFSCDVCNYDLHPKCVE 384
+G+FWAFSCDVC+YDLHP CVE
Sbjct: 361 NGQGKFWAFSCDVCDYDLHPACVE 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081801|emb|CBI20806.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 277/374 (74%), Positives = 317/374 (84%)
Query: 11 IDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
+DS+D +TVLASEG+EFLLS +GKV LSS GK ICLFFSANWCRPC+TFTPQLVQ+Y++
Sbjct: 11 VDSNDIITVLASEGIEFLLSGEGKVSLSSTEGKMICLFFSANWCRPCRTFTPQLVQIYNS 70
Query: 71 LRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLA 130
L G +E+IFISFD DE GF EHFK MPWLAVPF+ LH++L Y VD IPS IPL
Sbjct: 71 LIKTGRMIEIIFISFDRDETGFGEHFKSMPWLAVPFNVDLHRRLSDHYHVDHIPSFIPLG 130
Query: 131 SDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSR 190
DG IEED IGLIEDYGA A+PFT +RREELKA+D++KRQGGKLE+LLA EGR++V+S
Sbjct: 131 LDGKSIEEDAIGLIEDYGASAFPFTSQRREELKAMDNAKRQGGKLEELLANEGRNHVISS 190
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
R+I VSEL GKTIGLYF AHWCPPCR+FT+QLIE YN+L T N CFE++ VSTDRDH
Sbjct: 191 SGREILVSELVGKTIGLYFAAHWCPPCRAFTAQLIEAYNKLVATRNQCFEIIFVSTDRDH 250
Query: 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 310
+EFDL+ S MPWLAIPYED+ARQDLCRIF+IKGIPALVL+G DGKTISTNG+ +IS YGA
Sbjct: 251 QEFDLSLSNMPWLAIPYEDKARQDLCRIFDIKGIPALVLLGSDGKTISTNGRAIISSYGA 310
Query: 311 KAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFS 370
AFPFTESR EIE ALK+EGDALPR+VKD+KHEH LKLDMAKAYVCD CK GRFWAFS
Sbjct: 311 MAFPFTESRTTEIEAALKEEGDALPRQVKDLKHEHILKLDMAKAYVCDSCKKLGRFWAFS 370
Query: 371 CDVCNYDLHPKCVE 384
CDVC+YDLHP CVE
Sbjct: 371 CDVCDYDLHPTCVE 384
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798848|ref|XP_002867308.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313144|gb|EFH43567.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 266/385 (69%), Positives = 319/385 (82%), Gaps = 1/385 (0%)
Query: 1 MARDND-QSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKT 59
MA D Q KF +S D ++LA+EG+EFLLS G+VPL GKTICLFFSANWCRPCK
Sbjct: 1 MAVSTDYQVKFPESGDLYSILAAEGIEFLLSHSGEVPLEYIHGKTICLFFSANWCRPCKD 60
Query: 60 FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119
FTP+LV+LY+ L+TRG ELE+IF+SFDHD F EHF CMPWLAVPF+ L KLR +YR
Sbjct: 61 FTPELVKLYENLQTRGEELEIIFVSFDHDMTLFYEHFWCMPWLAVPFNLNLLNKLRDKYR 120
Query: 120 VDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLL 179
+ RIPSL+PL SD + ED+IGLIEDYG +A+PFT+KR+ ELKAIDDSKR GG+LE+LL
Sbjct: 121 ISRIPSLVPLYSDEISVAEDVIGLIEDYGPEAFPFTKKRKAELKAIDDSKRIGGQLEKLL 180
Query: 180 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 239
E R+YV++R+ K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL T F
Sbjct: 181 THESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLLDVYNELATRDKGSF 240
Query: 240 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299
EV+LVSTDRD +EF++N + MPWLAIPYEDR RQDLCRIF+IK IPALV+IGP+ KT++T
Sbjct: 241 EVILVSTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFSIKLIPALVIIGPEEKTVTT 300
Query: 300 NGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDC 359
N +EM+SLYG+++FPFTESRI E++ LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD
Sbjct: 301 NAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDKKHEHELKLDMAKAYVCDF 360
Query: 360 CKMRGRFWAFSCDVCNYDLHPKCVE 384
CK +GRFWAFSCD C+YDLHP CVE
Sbjct: 361 CKKQGRFWAFSCDACDYDLHPTCVE 385
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18417767|ref|NP_567869.1| putative nucleoredoxin 3 [Arabidopsis thaliana] gi|42573109|ref|NP_974651.1| putative nucleoredoxin 3 [Arabidopsis thaliana] gi|75161682|sp|Q8VZQ0.1|NRX3_ARATH RecName: Full=Probable nucleoredoxin 3; Short=AtNrx3 gi|17380978|gb|AAL36301.1| unknown protein [Arabidopsis thaliana] gi|20465609|gb|AAM20287.1| putative receptor kinase [Arabidopsis thaliana] gi|332660480|gb|AEE85880.1| putative nucleoredoxin 3 [Arabidopsis thaliana] gi|332660481|gb|AEE85881.1| putative nucleoredoxin 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 262/385 (68%), Positives = 320/385 (83%), Gaps = 1/385 (0%)
Query: 1 MARDND-QSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKT 59
MA D Q KF +S D ++LA+EG+EFLLS G+VPL GKTICLFFSA WCRPCK
Sbjct: 1 MAVSADYQVKFPESGDLYSILAAEGIEFLLSHSGEVPLEYIHGKTICLFFSAIWCRPCKD 60
Query: 60 FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119
FTP+L++LY+ L+ RG ELE+IF+SFDHD F EHF CMPWLAVPF+ +L KLR +Y
Sbjct: 61 FTPELIKLYENLQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYG 120
Query: 120 VDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLL 179
+ RIPSL+PL SD + ED+IGLIEDYG++A+PFT+KR+EELKAIDDSKR GG+LE+LL
Sbjct: 121 ISRIPSLVPLYSDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLL 180
Query: 180 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 239
E R+YV++R+ K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL TT F
Sbjct: 181 THESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSF 240
Query: 240 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299
EV+L+STDRD +EF++N + MPWLAIPYEDR RQDLCRIFN+K IPALV+IGP+ KT++T
Sbjct: 241 EVILISTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTT 300
Query: 300 NGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDC 359
N +EM+SLYG+++FPFTESRI E++ LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD
Sbjct: 301 NAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDF 360
Query: 360 CKMRGRFWAFSCDVCNYDLHPKCVE 384
CK +GRFWAFSC+ C+YDLHP CVE
Sbjct: 361 CKKQGRFWAFSCNACDYDLHPTCVE 385
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515549|ref|XP_003526462.1| PREDICTED: probable nucleoredoxin 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 262/387 (67%), Positives = 317/387 (81%)
Query: 1 MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
MA N ++ + D+ D L + A+EGVEFLLS +GKVP+S C GK ICLFF+ANWCRPC+ F
Sbjct: 1 MAGLNFEATYTDNHDILKIFAAEGVEFLLSCEGKVPVSECNGKIICLFFTANWCRPCRAF 60
Query: 61 TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120
P+LV+LY+TLR RG LE+IFISFD DE+GF+EHFK MPWLAVPFD +LH++L RYR+
Sbjct: 61 IPRLVELYETLRKRGINLEIIFISFDRDEDGFKEHFKNMPWLAVPFDVSLHRRLIDRYRI 120
Query: 121 DRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLA 180
DRIPS +PL SDG IEEDLIG IEDYGADA+PFTRKR EELKAID KR+ LE+LL
Sbjct: 121 DRIPSFVPLCSDGITIEEDLIGCIEDYGADAFPFTRKRHEELKAIDIRKREEANLEELLG 180
Query: 181 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 240
+G +++S D RK+ +SELAGKTIGLYFGA+W PPC +FT QL + YN LK CFE
Sbjct: 181 HKGCHFLISGDDRKVPISELAGKTIGLYFGAYWSPPCCAFTVQLTDAYNNLKVEKGDCFE 240
Query: 241 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300
+VL+STDRD +EF++N S MPWLA+PYEDR R DL RIF++KGIPALVLIGPDGK IS N
Sbjct: 241 IVLISTDRDLEEFNVNKSSMPWLAVPYEDRTRHDLRRIFDVKGIPALVLIGPDGKVISVN 300
Query: 301 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 360
GK M+S YGA+AFPFTESRI ++E AL+KEG+ALP++V+DVKHEH LKLDMAKAYVCD C
Sbjct: 301 GKLMVSSYGAEAFPFTESRIRDLEAALRKEGEALPQQVEDVKHEHVLKLDMAKAYVCDSC 360
Query: 361 KMRGRFWAFSCDVCNYDLHPKCVEGIN 387
K +G+FW FSCDVC+YDLHP C+E +N
Sbjct: 361 KKQGKFWTFSCDVCDYDLHPSCLEKVN 387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507842|ref|XP_003522672.1| PREDICTED: probable nucleoredoxin 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/387 (67%), Positives = 311/387 (80%)
Query: 1 MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
MA N ++ D+ D L + A+EGVEFLLS +GKVP+S C GK ICLFF+ANWCRPC+ F
Sbjct: 1 MAGLNFEATHTDNRDILKIFAAEGVEFLLSCEGKVPVSECNGKIICLFFTANWCRPCRAF 60
Query: 61 TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120
P+LV+LY+TLR R LE+IFISFD DE+GF+EHFK MPWLAVPFD LH++L RY+V
Sbjct: 61 VPRLVELYETLRKRRINLEIIFISFDRDEDGFKEHFKNMPWLAVPFDLNLHRRLIDRYQV 120
Query: 121 DRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLA 180
DRIPS +P SDG IEEDLIG IEDYGADA+PFTRKR EELK ID KR+ LE+LL
Sbjct: 121 DRIPSFVPSCSDGITIEEDLIGCIEDYGADAFPFTRKRHEELKGIDIRKREEADLEELLG 180
Query: 181 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 240
EG +++S D RK+ +SELAGKTIGLYFGA+W PPC +FT QL + YN LK CFE
Sbjct: 181 HEGGKFLISGDDRKVPLSELAGKTIGLYFGAYWSPPCCAFTVQLTDAYNNLKAAKGDCFE 240
Query: 241 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300
+VL+STDRD +EF++N S MPWLA+PYEDR R DL RIF++KGIPALVLIGPDGK IS N
Sbjct: 241 IVLISTDRDLEEFNVNKSTMPWLAVPYEDRTRHDLRRIFDVKGIPALVLIGPDGKVISVN 300
Query: 301 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 360
GK M+S YGA+AFPFTESRI ++E AL+KEG+ALP +V+DVKHEH LKLDMAKAYVCD C
Sbjct: 301 GKLMVSSYGAEAFPFTESRIRDLEAALRKEGEALPPQVEDVKHEHVLKLDMAKAYVCDSC 360
Query: 361 KMRGRFWAFSCDVCNYDLHPKCVEGIN 387
K +G+FW FSCDVC+YDLHP C+E +N
Sbjct: 361 KKQGKFWTFSCDVCDYDLHPSCLEKVN 387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466557|ref|XP_003603563.1| Nucleoredoxin [Medicago truncatula] gi|355492611|gb|AES73814.1| Nucleoredoxin [Medicago truncatula] gi|388520387|gb|AFK48255.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 259/387 (66%), Positives = 313/387 (80%)
Query: 1 MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
MA N ++++ DS D L V A+EGVEFLLS + KVPLS C GK ICLFFSANWCRPC+ F
Sbjct: 1 MAGLNFEAEYPDSFDVLKVFAAEGVEFLLSCERKVPLSDCNGKIICLFFSANWCRPCRLF 60
Query: 61 TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120
P LV LY+TLR RG +E+IFISFDHDE+GF+EH K MPWLAVPFD L+++L RYRV
Sbjct: 61 IPHLVGLYETLRKRGINIEIIFISFDHDEDGFKEHIKSMPWLAVPFDAKLNRRLIDRYRV 120
Query: 121 DRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLA 180
DRIPS IPL SD +++++I IEDYGADA+PFTRKR EELKAID KR+ L++LL
Sbjct: 121 DRIPSFIPLCSDALTVDKNMIEWIEDYGADAFPFTRKRHEELKAIDKRKREEVNLDELLT 180
Query: 181 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 240
GR++++S D RK+ VSEL GKT+GL+FGA+W PPC +FT QL + YN LK T HCFE
Sbjct: 181 HGGRNFLISGDDRKVLVSELTGKTVGLFFGAYWSPPCHAFTIQLADAYNNLKDTKGHCFE 240
Query: 241 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300
+VLVSTDRD KEF++N + MPWLAIPYEDR R DLCRIF+IK IPALV IGPDGK IS N
Sbjct: 241 IVLVSTDRDLKEFNVNRTSMPWLAIPYEDRTRHDLCRIFDIKKIPALVFIGPDGKVISLN 300
Query: 301 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 360
G+ M+S YGA+AFPFTESRI ++E AL+KEG+ALP++V+DVKHEH LKLDMAKAYVCD C
Sbjct: 301 GQFMVSSYGAEAFPFTESRIRDLEAALRKEGEALPQQVEDVKHEHLLKLDMAKAYVCDSC 360
Query: 361 KMRGRFWAFSCDVCNYDLHPKCVEGIN 387
K +G+FW FSCDVC+YDLHP C+E +N
Sbjct: 361 KKQGKFWTFSCDVCDYDLHPSCLEKVN 387
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449499528|ref|XP_004160840.1| PREDICTED: probable nucleoredoxin 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/379 (61%), Positives = 286/379 (75%), Gaps = 3/379 (0%)
Query: 12 DSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL 71
D DFL +LA GV+FLLS + KV C GK ICLFFSANW RPC+TFTPQLVQLY++L
Sbjct: 11 DKDDFLQLLAVLGVDFLLSGEEKVSPILCAGKMICLFFSANWSRPCRTFTPQLVQLYNSL 70
Query: 72 RTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLAS 131
+ RG +LE+IFIS DHD+N FE++FK MPWLAVP ++ L K+L +Y VD IPS +PL
Sbjct: 71 QKRGEKLEIIFISLDHDKNEFEQYFKTMPWLAVPLNDKLQKQLCGKYHVDCIPSFVPLCG 130
Query: 132 DGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRD 191
D L E+DLIG IEDYGA+ +PFTRKR +ELKA+D +KR G+LE+L G +YV+S
Sbjct: 131 DHILKEDDLIGFIEDYGAEVFPFTRKRMQELKAMDCAKRVEGRLEELFGNRGYNYVISSH 190
Query: 192 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANH--CFEVVLVSTDR 248
K +S+L GKTIGLYFGA+W PP RSFT++L +VY E + T NH EV+ VSTDR
Sbjct: 191 GGKTQISQLVGKTIGLYFGAYWSPPSRSFTAKLSKVYKEIMDKTENHHSSLEVIFVSTDR 250
Query: 249 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLY 308
+ EF LN MPWLAIPYED R DL RIF++K IP LVLIG DGKT S NG+ ++ LY
Sbjct: 251 NLDEFKLNIMDMPWLAIPYEDETRGDLYRIFDVKAIPTLVLIGADGKTSSENGRGLVCLY 310
Query: 309 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWA 368
GA+AFPFT RI E+E A+KKEG+ LP +V+D+KHEH LKL+ AKAYVCD CK++GRFWA
Sbjct: 311 GAEAFPFTAERIYELERAVKKEGEDLPSKVEDIKHEHVLKLEFAKAYVCDFCKLQGRFWA 370
Query: 369 FSCDVCNYDLHPKCVEGIN 387
FSC VC+YDLHP CV+ N
Sbjct: 371 FSCHVCDYDLHPTCVQLTN 389
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442006|ref|XP_004138773.1| PREDICTED: probable nucleoredoxin 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/379 (60%), Positives = 286/379 (75%), Gaps = 3/379 (0%)
Query: 12 DSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL 71
D DFL +LA GV+FLLS + KV C GK ICLFFSANW RPC+TFTPQLVQLY++L
Sbjct: 11 DKDDFLQLLAVLGVDFLLSGEEKVSPILCAGKMICLFFSANWSRPCRTFTPQLVQLYNSL 70
Query: 72 RTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLAS 131
+ RG +LE+IFIS DHD+N FE++FK MPWLAVP ++ L K+L +Y VD IPS +PL
Sbjct: 71 QKRGEKLEIIFISLDHDKNEFEQYFKTMPWLAVPLNDKLQKQLCGKYHVDCIPSFVPLCG 130
Query: 132 DGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRD 191
D L E+DLIG +EDYGA+ +PFTRKR +ELKA+D +KR G+LE+L G +YV+S
Sbjct: 131 DHILKEDDLIGFLEDYGAEVFPFTRKRMQELKAMDCAKRVEGRLEELFGNRGYNYVISSH 190
Query: 192 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANH--CFEVVLVSTDR 248
K +S+L GKTIGLYFGA+W PP RSFT++L +VY E + T NH EV+ VSTDR
Sbjct: 191 GGKTQISQLVGKTIGLYFGAYWSPPSRSFTAKLSKVYKEIMDKTENHHSSLEVIFVSTDR 250
Query: 249 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLY 308
+ EF LN MPWLAIPYED R DL RIF++K IP LVLIG DGKT S NG+ ++ LY
Sbjct: 251 NLDEFKLNIMDMPWLAIPYEDETRGDLYRIFDVKAIPTLVLIGADGKTSSENGRGLVCLY 310
Query: 309 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWA 368
GA+AFPFT RI E+E A+KKEG+ LP +V+D+KHEH LKL+ AKAYVCD CK++GRFWA
Sbjct: 311 GAEAFPFTAERIYELERAVKKEGEDLPSKVEDIKHEHVLKLEFAKAYVCDFCKLQGRFWA 370
Query: 369 FSCDVCNYDLHPKCVEGIN 387
FSC +C+YDLHP CV+ N
Sbjct: 371 FSCHICDYDLHPTCVQLTN 389
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242077118|ref|XP_002448495.1| hypothetical protein SORBIDRAFT_06g027950 [Sorghum bicolor] gi|241939678|gb|EES12823.1| hypothetical protein SORBIDRAFT_06g027950 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/364 (59%), Positives = 275/364 (75%), Gaps = 4/364 (1%)
Query: 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIF 82
GV+FLL+ +GK VPLSS GKT CLFFSA+WCRPC++FTP LVQ+Y LR G +E+IF
Sbjct: 18 GVQFLLNNEGKEVPLSSIEGKTTCLFFSAHWCRPCRSFTPNLVQIYTALRNTGKNIEIIF 77
Query: 83 ISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLA---SDGTLIEED 139
IS DHDE F +HFK M WLA+PFD L +KL + ++ IP+LIPL+ S G EED
Sbjct: 78 ISLDHDEASFWDHFKGMSWLALPFDTGLSQKLCAHFGIEHIPALIPLSATPSSGVGFEED 137
Query: 140 LIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSE 199
+ L+++YG DAYPF+ +RR EL+A+DD++R+GGKL++LL + RDYV+S D KI +++
Sbjct: 138 AVRLVDEYGEDAYPFSAQRRRELEAMDDARRKGGKLQELLGCKERDYVISADDIKIPIAD 197
Query: 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 259
L GKT+GLYFGAHWCPPC FT QL EVYNELK FEV+ +S DR+ EF + S
Sbjct: 198 LTGKTVGLYFGAHWCPPCHVFTKQLKEVYNELKILRPESFEVIFISIDRNKGEFQASMSS 257
Query: 260 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESR 319
MPWLAIPY D ARQ L RIF +KGIP L+++G DGK + T+G+ IS YGA AFPFTESR
Sbjct: 258 MPWLAIPYSDTARQKLTRIFAVKGIPGLLILGLDGKVLKTDGRTAISTYGATAFPFTESR 317
Query: 320 IAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLH 379
++E++ AL+KEGD LPR+V D KH H L+LDMAKAYVCD C+ +GR+W FSC CN+DLH
Sbjct: 318 VSEVDEALRKEGDKLPRQVNDPKHRHVLELDMAKAYVCDECQKKGRYWVFSCKQCNFDLH 377
Query: 380 PKCV 383
P CV
Sbjct: 378 PSCV 381
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| TAIR|locus:2128141 | 392 | AT4G31240 [Arabidopsis thalian | 0.984 | 0.979 | 0.680 | 5.5e-148 | |
| TAIR|locus:2195623 | 578 | AT1G60420 [Arabidopsis thalian | 0.933 | 0.629 | 0.416 | 2.2e-82 | |
| UNIPROTKB|Q6DKJ4 | 435 | NXN "Nucleoredoxin" [Homo sapi | 0.433 | 0.388 | 0.348 | 3.5e-43 | |
| RGD|1310489 | 435 | Nxn "nucleoredoxin" [Rattus no | 0.433 | 0.388 | 0.354 | 5.2e-43 | |
| MGI|MGI:109331 | 435 | Nxn "nucleoredoxin" [Mus muscu | 0.433 | 0.388 | 0.348 | 9.9e-43 | |
| UNIPROTKB|A6QLU8 | 435 | NXN "Nucleoredoxin" [Bos tauru | 0.433 | 0.388 | 0.354 | 2.2e-42 | |
| ZFIN|ZDB-GENE-050522-75 | 418 | nxn "nucleoredoxin" [Danio rer | 0.430 | 0.401 | 0.395 | 5.2e-41 | |
| UNIPROTKB|Q6GM16 | 414 | nxn "Nucleoredoxin" [Xenopus l | 0.405 | 0.381 | 0.385 | 9.4e-40 | |
| UNIPROTKB|I3LEF2 | 328 | NXN "Uncharacterized protein" | 0.405 | 0.481 | 0.372 | 6.8e-30 | |
| UNIPROTKB|F1NG23 | 328 | NXN "Uncharacterized protein" | 0.433 | 0.515 | 0.343 | 5.9e-29 |
| TAIR|locus:2128141 AT4G31240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
Identities = 262/385 (68%), Positives = 320/385 (83%)
Query: 1 MARDND-QSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKT 59
MA D Q KF +S D ++LA+EG+EFLLS G+VPL GKTICLFFSA WCRPCK
Sbjct: 1 MAVSADYQVKFPESGDLYSILAAEGIEFLLSHSGEVPLEYIHGKTICLFFSAIWCRPCKD 60
Query: 60 FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119
FTP+L++LY+ L+ RG ELE+IF+SFDHD F EHF CMPWLAVPF+ +L KLR +Y
Sbjct: 61 FTPELIKLYENLQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYG 120
Query: 120 VDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLL 179
+ RIPSL+PL SD + ED+IGLIEDYG++A+PFT+KR+EELKAIDDSKR GG+LE+LL
Sbjct: 121 ISRIPSLVPLYSDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLL 180
Query: 180 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 239
E R+YV++R+ K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL TT F
Sbjct: 181 THESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSF 240
Query: 240 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299
EV+L+STDRD +EF++N + MPWLAIPYEDR RQDLCRIFN+K IPALV+IGP+ KT++T
Sbjct: 241 EVILISTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTT 300
Query: 300 NGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDC 359
N +EM+SLYG+++FPFTESRI E++ LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD
Sbjct: 301 NAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDF 360
Query: 360 CKMRGRFWAFSCDVCNYDLHPKCVE 384
CK +GRFWAFSC+ C+YDLHP CVE
Sbjct: 361 CKKQGRFWAFSCNACDYDLHPTCVE 385
|
|
| TAIR|locus:2195623 AT1G60420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 153/367 (41%), Positives = 227/367 (61%)
Query: 18 TVLASEGVEFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT 76
+VL + +F++S G KVP+S GKTI L FS R C TP+LV+ Y L+
Sbjct: 178 SVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKE 237
Query: 77 ELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136
+ E++ IS + DE F + FK PWLA+PF++ KL + + +P+L+ L DG
Sbjct: 238 DFEIVLISLEDDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTR 297
Query: 137 EEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT 196
++ I+DYG AYPFT ++ +ELK ++ +K + LE LL +YVL +D K+
Sbjct: 298 HSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKVL 357
Query: 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256
VS+L GKTI +YF AHWCPPCR+FT +L+EVY ++K N FE++ +S+DRD + FD
Sbjct: 358 VSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKER-NEAFELIFISSDRDQESFDEY 416
Query: 257 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFT 316
+S MPWLA+P+ D + L + F + GIP L +GP G+T++ ++++ +GA A+PFT
Sbjct: 417 YSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFT 476
Query: 317 ESRIAEIETALKKEGDALPREVKDVKHE-HELKLDMAKAYVCDCCKMRGRFWAFSCDVCN 375
E R+ EIE + P++VK V HE HEL+L + Y CD C+ G W++ CD C+
Sbjct: 477 EERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECD 536
Query: 376 YDLHPKC 382
+DLH KC
Sbjct: 537 FDLHAKC 543
|
|
| UNIPROTKB|Q6DKJ4 NXN "Nucleoredoxin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 3.5e-43, Sum P(3) = 3.5e-43
Identities = 60/172 (34%), Positives = 98/172 (56%)
Query: 187 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246
+L + + + S L G +G+YF AHWCPPCRS T L+E Y ++K + FE++ VS
Sbjct: 178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQN-FEIIFVSA 236
Query: 247 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 304
DR + F S MPWLA+PY D AR+ L R++ I+GIP L+++ P G+ I+ G+ E+
Sbjct: 237 DRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEV 296
Query: 305 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 356
++ + FP+ + E+ + + + P V V E + + + AK +
Sbjct: 297 LNDEDCREFPWHPKPVLELSDSNAAQLNEGPCLVLFVDSEDDGESEAAKQLI 348
|
|
| RGD|1310489 Nxn "nucleoredoxin" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 5.2e-43, Sum P(3) = 5.2e-43
Identities = 61/172 (35%), Positives = 98/172 (56%)
Query: 187 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246
+L + + + S L G +G+YF AHWCPPCRS T L+E Y ++K A FE++ VS
Sbjct: 178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEIIFVSA 236
Query: 247 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 304
DR + F S MPWLA+PY D AR+ L R++ I+GIP L+++ P G+ I+ G+ E+
Sbjct: 237 DRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEV 296
Query: 305 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 356
++ + FP+ + E+ + + + P V V E + + + AK +
Sbjct: 297 LNDEDCREFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348
|
|
| MGI|MGI:109331 Nxn "nucleoredoxin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 9.9e-43, Sum P(3) = 9.9e-43
Identities = 60/172 (34%), Positives = 97/172 (56%)
Query: 187 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246
+L + + + S L G +G+YF AHWCPPCRS T L+E Y ++K FE++ VS
Sbjct: 178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQE-FEIIFVSA 236
Query: 247 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 304
DR + F S MPWLA+PY D AR+ L R++ I+GIP L+++ P G+ I+ G+ E+
Sbjct: 237 DRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEV 296
Query: 305 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 356
++ + FP+ + E+ + + + P V V E + + + AK +
Sbjct: 297 LNDEDCREFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348
|
|
| UNIPROTKB|A6QLU8 NXN "Nucleoredoxin" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 2.2e-42, Sum P(3) = 2.2e-42
Identities = 61/172 (35%), Positives = 97/172 (56%)
Query: 187 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246
+L + + + S L G +G+YF AHWCPPCRS T L+E Y ++K A FE++ VS
Sbjct: 178 LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEIIFVSA 236
Query: 247 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 304
DR F S MPWLA+PY D AR+ L R++ I+GIP L+++ P G+ I+ G+ E+
Sbjct: 237 DRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEV 296
Query: 305 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 356
++ + FP+ + E+ + + + P V V E + + + AK +
Sbjct: 297 LNDEDCRGFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348
|
|
| ZFIN|ZDB-GENE-050522-75 nxn "nucleoredoxin" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 68/172 (39%), Positives = 98/172 (56%)
Query: 188 LSRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246
L R++R+ T S L G +G+YF AHWCPPCRS T L+E Y ++K T FE+V VS
Sbjct: 161 LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQK-FEIVFVSA 219
Query: 247 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 304
DR + F S MPWLA+PY D AR+ L R++ I+GIP L+L+ +G I+ G+ E+
Sbjct: 220 DRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEI 279
Query: 305 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 356
++ FP+ + E+ + + P V V E E +LD AK +
Sbjct: 280 LNDPDCGLFPWHPRPVLELSESNAVQLHEGPCLVLFVDAEEEGELDPAKELI 331
|
|
| UNIPROTKB|Q6GM16 nxn "Nucleoredoxin" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 62/161 (38%), Positives = 92/161 (57%)
Query: 198 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257
S L G +G+YF A+WCPPCRS T L+E Y ++K + FE+VLVS DR + F
Sbjct: 168 STLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQK-FEIVLVSADRSEESFKQYF 226
Query: 258 SIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPF 315
S MPWLA+PY D AR+ L R++ I+GIP L+++ P G+ I+ G+ E++ K FP+
Sbjct: 227 SEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITRQGRVEVLRDIDCKEFPW 286
Query: 316 TESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 356
+ E+ + + P V V E E + + AK +
Sbjct: 287 HPKPVVELTELNAVQLNEGPCLVLFVDSEDEGESEAAKQLI 327
|
|
| UNIPROTKB|I3LEF2 NXN "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 60/161 (37%), Positives = 92/161 (57%)
Query: 198 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257
S L G +G+YF AHWCPPCRS T L+E Y ++K A FE++ VS DR F
Sbjct: 82 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEIIFVSADRSEDSFKQYF 140
Query: 258 SIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPF 315
S MPWLA+PY D AR+ L R++ I+GIP L+++ P G+ I+ G+ E+++ + FP+
Sbjct: 141 SEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCRGFPW 200
Query: 316 TESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 356
+ E+ + + + P V V E + + + AK +
Sbjct: 201 HPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 241
|
|
| UNIPROTKB|F1NG23 NXN "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 59/172 (34%), Positives = 96/172 (55%)
Query: 187 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246
+L + + + S L G +G+YF AHWCPPCRS T L+E Y ++K A FE++ VS
Sbjct: 71 LLRNNGQTLDSSALEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEILFVSA 129
Query: 247 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 304
DR F S MPW+A+PY D AR+ L R++ I+GIP L+++ G+ I+ G+ E+
Sbjct: 130 DRSEDSFKQYFSEMPWVAVPYADEARRSRLNRLYGIQGIPTLIVLDSQGEVITRQGRVEV 189
Query: 305 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 356
++ + FP+ + E+ + + + P V V E + + + AK +
Sbjct: 190 LNDIECREFPWHPKPVLELTDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 241
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8VZQ0 | NRX3_ARATH | 1, ., 8, ., 1, ., 8 | 0.6805 | 0.9846 | 0.9795 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 390 | |||
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 3e-65 | |
| cd03009 | 131 | cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l | 7e-55 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 1e-52 | |
| cd02964 | 132 | cd02964, TryX_like_family, Tryparedoxin (TryX)-lik | 4e-47 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 4e-23 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 9e-22 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 2e-12 | |
| cd03008 | 146 | cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like | 2e-12 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 6e-11 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 4e-09 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 1e-07 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 1e-06 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 4e-06 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 6e-06 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 1e-05 | |
| cd03011 | 123 | cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, | 9e-05 | |
| COG0526 | 127 | COG0526, TrxA, Thiol-disulfide isomerase and thior | 2e-04 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 4e-04 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 0.001 | |
| pfam03107 | 30 | pfam03107, C1_2, C1 domain | 0.001 | |
| COG0526 | 127 | COG0526, TrxA, Thiol-disulfide isomerase and thior | 0.004 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 3e-65
Identities = 65/132 (49%), Positives = 91/132 (68%), Gaps = 2/132 (1%)
Query: 185 DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 244
D++L D K+ VS L GKT+GLYF A WCPPCR+FT +L+E Y +LK + FE+V +
Sbjct: 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-GKNFEIVFI 59
Query: 245 STDRDHKEFDLNHSIMPWLAIPYEDRA-RQDLCRIFNIKGIPALVLIGPDGKTISTNGKE 303
S DRD + F+ S MPWLA+P+ DR R L R F I+GIP L+++ DG+ ++T+ +E
Sbjct: 60 SWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARE 119
Query: 304 MISLYGAKAFPF 315
++ YGA AFPF
Sbjct: 120 LVLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 7e-55
Identities = 63/131 (48%), Positives = 90/131 (68%), Gaps = 2/131 (1%)
Query: 26 EFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
+FLL G KVP+SS GKT+ L+FSA+WC PC+ FTP+LV+ Y+ L+ G E++FIS
Sbjct: 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60
Query: 85 FDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGL 143
+D DE F ++F MPWLAVPF D +L ++++ IP+LI L +DG ++ D L
Sbjct: 61 WDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDAREL 120
Query: 144 IEDYGADAYPF 154
+ +YGADA+PF
Sbjct: 121 VLEYGADAFPF 131
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-52
Identities = 58/134 (43%), Positives = 84/134 (62%), Gaps = 5/134 (3%)
Query: 185 DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 244
++L + VS L GKT+GLYF A WCPPCR+FT +L+E Y +LK FE+V V
Sbjct: 1 LFLLDGEGVVP-VSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-GKNFEIVFV 58
Query: 245 STDRDHKEFDLN-HSIMPWLAIPYEDRA-RQDLCRIFNIKGIPALVLIGPDGKTISTNGK 302
S DR + F+ + PWLA+P+ED R+ L + F ++GIP LV++ PDG ++TN +
Sbjct: 59 SRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNAR 118
Query: 303 EMIS-LYGAKAFPF 315
+ + GA AFP+
Sbjct: 119 DEVEEDPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 4e-47
Identities = 59/132 (44%), Positives = 87/132 (65%), Gaps = 3/132 (2%)
Query: 26 EFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85
FLL +G VP+S+ GKT+ L+FSA+WC PC+ FTP+LV+ Y+ L+ G E++F+S
Sbjct: 1 LFLLDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSR 60
Query: 86 DHDENGFEEHFKCM-PWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGL 143
D E F E+F M PWLAVPF DE L + L +++V+ IP+L+ L DG ++ +
Sbjct: 61 DRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDE 120
Query: 144 I-EDYGADAYPF 154
+ ED GA A+P+
Sbjct: 121 VEEDPGACAFPW 132
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 4e-23
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
Query: 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD--LNHSI 259
GK + LYF A WCPPCR+FT +L E+Y +LK E+V VS DRD +E+ L
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYEKLK-KPK--VEIVYVSLDRDEEEWKKYLKKMP 57
Query: 260 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
WL +P+ D+ R +L R++ +K IP LVL+ DG+
Sbjct: 58 KDWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 9e-22
Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 4/95 (4%)
Query: 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP- 100
GK + L+F A+WC PC+ FTP+L +LY+ L + ++E++++S D DE ++++ K MP
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYEKL--KKPKVEIVYVSLDRDEEEWKKYLKKMPK 58
Query: 101 -WLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGT 134
WL VPF + +L Y V IP+L+ L DG
Sbjct: 59 DWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-12
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 197 VSELAGKTIGLYFGAHWCPPCRSFTSQL----IEVYNELKTTANHCFEVVLVSTDRDHKE 252
V+ L + + L+FGA P C+ F +L + + +E + +V VS D+ ++
Sbjct: 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ 79
Query: 253 FDLNHSIMP--WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 310
+ MP WL +P+ED R++L F+++ +P +V++ PDG ++ N + I G
Sbjct: 80 QESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGP 139
Query: 311 KAF 313
F
Sbjct: 140 ACF 142
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-12
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 43 KTICLFFSANWCRPCKTFTPQL----VQLYDTLRT-RGTELEVIFISFDHDENGFEEHFK 97
+ + LFF A C+ F P+L V+L D R +L ++++S D E E K
Sbjct: 26 RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLK 85
Query: 98 CMP--WLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAY 152
MP WL +PF++ ++L ++ V+ +P+++ L DG ++ + + I G +
Sbjct: 86 DMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 6e-11
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
D + +++S+L GK + + F A WCPPCR+ +L + E K EVV V+ D D
Sbjct: 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG---VEVVGVNVDDDD 64
Query: 251 KEFDLNHSIMPWLA---IPYE---DRARQDLCRIFNIKGIPALVLIGPDGKTI 297
++ +L I + D +L + + ++G+P LI DG+
Sbjct: 65 PA-----AVKAFLKKYGITFPVLLD-PDGELAKAYGVRGLPTTFLIDRDGRIR 111
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-09
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 193 RKITVSELAGKTIGLYF-GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--D 249
+++++S+ GK + L+F + P C + L ++Y E K EV+ VS D
Sbjct: 16 KEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFK---KLGVEVLGVSVDSPES 72
Query: 250 HKEFDLNHSI-MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGK 295
HK+F + P L+ P ++ + + + + +I PDGK
Sbjct: 73 HKKFAEKLGLPFPLLSDP-----DGEVAKAYGVLNEEEGLALRTTFVIDPDGK 120
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-07
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101
GK + + F+ C CK +L++ D VI+++ D +
Sbjct: 5 GKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSK----------EV 54
Query: 102 LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136
+ K+L +Y V P+++ L DG +
Sbjct: 55 TDFDGETLSEKELARKYGVRGTPTIVFLDGDGKEV 89
|
Length = 105 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 261
GK + + F CP C+ +L++ + + ++ F V+ V+ D
Sbjct: 5 GKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDN-FVVIYVNVDDS----------KE 53
Query: 262 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 297
E + ++L R + ++G P +V + DGK +
Sbjct: 54 VTDFDGETLSEKELARKYGVRGTPTIVFLDGDGKEV 89
|
Length = 105 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-06
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG--- 91
V LS GK + + F A+WC PC+ P+L L + G +EV+ ++ D D+
Sbjct: 12 VSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVK 69
Query: 92 -FEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137
F + + V D +L Y V +P+ + DG +
Sbjct: 70 AFLKKYG--ITFPVLLDPDG--ELAKAYGVRGLPTTFLIDRDGRIRA 112
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 6e-06
Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 43/122 (35%)
Query: 207 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 266
+ F A WC PC++ V EL V V D D
Sbjct: 15 VDFWAPWCGPCKAIA----PVLEELAEEYPK---VKFVKVDVD----------------- 50
Query: 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETA 326
+L + ++ IP + NGKE+ + GA E+E
Sbjct: 51 ----ENPELAEEYGVRSIPTFLFF--------KNGKEVDRVVGADPK-------EELEEF 91
Query: 327 LK 328
L+
Sbjct: 92 LE 93
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 23/136 (16%)
Query: 185 DYVLSR-DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVL 243
++VL+ + +KI + +L GK + L F WC PC + E+Y + K E++
Sbjct: 43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK---EKGVEIIA 99
Query: 244 VSTDRDH-------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT 296
V+ D + L + AI D+ RQ + + + +P LI DGK
Sbjct: 100 VNVDETELAVKNFVNRYGLTFPV----AI---DKGRQVI-DAYGVGPLPTTFLIDKDGKV 151
Query: 297 IS----TNGKEMISLY 308
+ +E + Y
Sbjct: 152 VKVITGEMTEEQLEEY 167
|
Length = 173 |
| >gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 9e-05
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 199 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS----TDRDHKEFD 254
L+GK + +YF A WCP CR FTS + A + VV V+ D F
Sbjct: 17 SLSGKPVLVYFWATWCPVCR-FTSPTVNQL------AAD-YPVVSVALRSGDDGAVARF- 67
Query: 255 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNG 301
+ + I D + + + PA+V++ P G T G
Sbjct: 68 MQKKGYGFPVINDPD---GVISARWGVSVTPAIVIVDPGGIVFVTTG 111
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123 |
| >gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 40.7 bits (94), Expect = 2e-04
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 32/127 (25%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
D +++SEL GK + + F A WCPPCR+ L E+ E EVV V+ D ++
Sbjct: 21 DGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEY----GGDVEVVAVNVDDEN 76
Query: 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 310
+ LA + ++ IP L+L +GKE+ L G
Sbjct: 77 PD----------LAAEFGV----------AVRSIPTLLLFK--------DGKEVDRLVGG 108
Query: 311 KAFPFTE 317
K P
Sbjct: 109 KVLPKEA 115
|
Length = 127 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 4e-04
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 33 GKVPLSSCGGKTICLFF-SANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
+V LS GK + LFF ++ C T P L LY+ + G EV+ +S D
Sbjct: 16 KEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGV--EVLGVSVD 68
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.001
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 28/97 (28%)
Query: 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101
K + + F A WC PCK P L +L +V F+ D DEN
Sbjct: 10 AKPVVVDFWAPWCGPCKAIAPVLEEL------AEEYPKVKFVKVDVDEN----------- 52
Query: 102 LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138
+L Y V IP+ + +G ++
Sbjct: 53 ----------PELAEEYGVRSIPTFL-FFKNGKEVDR 78
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|202539 pfam03107, C1_2, C1 domain | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.001
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 355 YVCDCCKMR-GRFWAFSCDVCNYDLHPKCV 383
+ C C+ + F+ ++C C + LH +C
Sbjct: 1 FWCSVCRRKIDGFYFYTCKKCCFTLHVRCA 30
|
This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins. Length = 30 |
| >gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 36.8 bits (84), Expect = 0.004
Identities = 18/74 (24%), Positives = 27/74 (36%)
Query: 16 FLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG 75
FL + F + LS GK + + F A WC PC+ P L +L +
Sbjct: 6 FLLGELATAASFEELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDV 65
Query: 76 TELEVIFISFDHDE 89
+ V + D
Sbjct: 66 EVVAVNVDDENPDL 79
|
Length = 127 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.92 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.92 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.91 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.9 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.9 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.88 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.86 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.86 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.85 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.84 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.83 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.82 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.82 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.82 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.82 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.82 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.82 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.81 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.81 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.81 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.81 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.8 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.8 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.8 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.8 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.79 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.79 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.78 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.78 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.78 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.78 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.77 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.77 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.77 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.76 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.76 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.76 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.75 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.74 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.74 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.74 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.73 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.73 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.72 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.72 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.71 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.71 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.71 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.7 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.7 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.7 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.68 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.68 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.68 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.68 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.68 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.67 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.67 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.67 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.67 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.67 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.66 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.66 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.66 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.66 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.66 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.65 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.64 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.63 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.63 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.62 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.62 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.61 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.61 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.61 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.61 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.6 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.6 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.6 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.6 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.59 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.59 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.59 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.58 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.57 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.57 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.57 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.56 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.55 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.55 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.55 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.54 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.54 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.54 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.53 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.53 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.53 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.53 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.53 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.52 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.52 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.52 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.51 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.51 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.5 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.49 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.49 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.48 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.48 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.46 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.46 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.46 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.46 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.45 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.45 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.45 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.44 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.44 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.44 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.43 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.43 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.43 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.43 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.42 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.42 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.41 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.41 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.41 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.4 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.4 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.4 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.39 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.39 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.39 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.39 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.39 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.39 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.38 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.38 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.38 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.38 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.38 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.36 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.36 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.36 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.36 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.36 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.36 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.36 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.36 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.36 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.36 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.35 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.35 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.35 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.35 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.34 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.34 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.34 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.33 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.33 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.32 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.32 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.32 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.31 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.31 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.31 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.31 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.31 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.31 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.31 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.31 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.3 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.3 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.3 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.29 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.29 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.28 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.27 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.27 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.26 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.26 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.26 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.25 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.24 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.24 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.23 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.23 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.23 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.23 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.23 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.23 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.23 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.23 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 99.22 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.22 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.21 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.21 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.21 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.21 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.2 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.2 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.19 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.17 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.16 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.15 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.13 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.13 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 99.12 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.11 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 99.11 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.1 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.09 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 99.09 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.09 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.08 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.07 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 99.07 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.06 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.06 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.05 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 99.04 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.03 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 99.01 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.0 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.99 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.96 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.96 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.93 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.93 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 98.92 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 98.9 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 98.89 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.87 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.85 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.85 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 98.85 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.84 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.83 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.83 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.82 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.81 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.8 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.8 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.79 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 98.79 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.79 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.78 | |
| PF07649 | 30 | C1_3: C1-like domain; InterPro: IPR011424 This sho | 98.78 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.78 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.78 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.76 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.75 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.74 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.73 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.73 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.69 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.69 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.69 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 98.65 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.64 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.64 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.63 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.6 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.57 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.57 | |
| smart00594 | 122 | UAS UAS domain. | 98.52 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 98.52 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 98.46 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.45 | |
| PF03107 | 30 | C1_2: C1 domain; InterPro: IPR004146 This short do | 98.42 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.42 | |
| smart00594 | 122 | UAS UAS domain. | 98.42 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.41 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.35 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.34 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.34 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.29 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.25 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.24 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 98.22 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.21 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.2 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.18 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.18 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 98.17 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 98.13 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 98.13 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 98.11 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.1 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 98.1 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.09 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.08 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.97 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.97 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.96 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 97.95 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 97.89 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.87 | |
| cd02340 | 43 | ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre | 97.84 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.79 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.79 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.77 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 97.76 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.73 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.71 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.71 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 97.69 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.67 | |
| cd02339 | 45 | ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre | 97.67 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 97.66 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.66 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 97.56 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 97.42 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.41 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.4 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 97.38 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.32 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 97.31 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 97.26 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 97.23 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 97.2 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 97.18 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 97.13 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 97.13 | |
| cd02342 | 43 | ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre | 97.02 | |
| cd02341 | 48 | ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present | 97.02 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 97.02 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 96.98 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 96.9 | |
| cd02249 | 46 | ZZ Zinc finger, ZZ type. Zinc finger present in dy | 96.9 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 96.81 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.79 | |
| cd02344 | 45 | ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present | 96.77 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 96.76 | |
| cd02343 | 48 | ZZ_EF Zinc finger, ZZ type. Zinc finger present in | 96.76 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 96.73 | |
| cd02335 | 49 | ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present | 96.71 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 96.7 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 96.68 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.68 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| cd02334 | 49 | ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr | 96.59 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.58 | |
| PF00569 | 46 | ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc | 96.53 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 96.5 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 96.49 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 96.48 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 96.41 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 96.41 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 96.39 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 96.36 | |
| smart00291 | 44 | ZnF_ZZ Zinc-binding domain, present in Dystrophin, | 96.36 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 96.13 | |
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 96.12 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 96.11 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 96.1 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 96.05 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 96.05 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 96.02 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 96.01 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 95.99 | |
| cd02338 | 49 | ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre | 95.97 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 95.97 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 95.88 | |
| cd02345 | 49 | ZZ_dah Zinc finger, ZZ type. Zinc finger present i | 95.87 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 95.81 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 95.7 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 95.69 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 95.66 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 95.65 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 95.64 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 95.55 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 95.49 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 95.27 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 95.18 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 95.16 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 95.16 | |
| cd02337 | 41 | ZZ_CBP Zinc finger, ZZ type. Zinc finger present i | 95.1 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 95.1 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 95.03 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 95.0 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 94.99 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 94.84 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 94.83 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 94.78 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 94.69 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 94.66 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 94.56 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 94.56 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 94.52 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 94.34 | |
| KOG4582 | 278 | consensus Uncharacterized conserved protein, conta | 94.3 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 94.24 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 94.22 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 94.21 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 94.16 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 94.12 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 94.02 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 93.91 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 93.9 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 93.73 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 93.71 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 93.68 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 93.52 | |
| PF00130 | 53 | C1_1: Phorbol esters/diacylglycerol binding domain | 93.51 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 93.49 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 93.42 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 93.03 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 93.01 | |
| KOG3507 | 62 | consensus DNA-directed RNA polymerase, subunit RPB | 92.49 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 92.48 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 92.08 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 91.86 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 91.59 | |
| cd00029 | 50 | C1 Protein kinase C conserved region 1 (C1) . Cyst | 91.47 | |
| KOG1752 | 104 | consensus Glutaredoxin and related proteins [Postt | 91.45 | |
| COG1331 | 667 | Highly conserved protein containing a thioredoxin | 91.15 | |
| COG0695 | 80 | GrxC Glutaredoxin and related proteins [Posttransl | 91.15 | |
| KOG2603 | 331 | consensus Oligosaccharyltransferase, gamma subunit | 90.87 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 90.03 | |
| PRK10824 | 115 | glutaredoxin-4; Provisional | 89.67 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 89.49 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 89.26 | |
| PRK12759 | 410 | bifunctional gluaredoxin/ribonucleoside-diphosphat | 88.73 | |
| cd02336 | 45 | ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present | 88.28 | |
| COG4545 | 85 | Glutaredoxin-related protein [Posttranslational mo | 88.27 | |
| COG4545 | 85 | Glutaredoxin-related protein [Posttranslational mo | 87.75 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 87.42 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 87.38 | |
| smart00109 | 49 | C1 Protein kinase C conserved region 1 (C1) domain | 87.33 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 86.88 | |
| KOG2603 | 331 | consensus Oligosaccharyltransferase, gamma subunit | 86.47 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 86.09 | |
| cd03073 | 111 | PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s | 85.89 | |
| PF07449 | 107 | HyaE: Hydrogenase-1 expression protein HyaE; Inter | 85.82 | |
| KOG4301 | 434 | consensus Beta-dystrobrevin [Cytoskeleton] | 84.83 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 84.43 | |
| PF13911 | 115 | AhpC-TSA_2: AhpC/TSA antioxidant enzyme | 84.0 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 83.99 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 83.22 | |
| PRK12759 | 410 | bifunctional gluaredoxin/ribonucleoside-diphosphat | 82.61 | |
| cd03073 | 111 | PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s | 81.94 | |
| cd03060 | 71 | GST_N_Omega_like GST_N family, Omega-like subfamil | 80.61 | |
| KOG0541 | 171 | consensus Alkyl hydroperoxide reductase/peroxiredo | 80.61 |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-25 Score=179.11 Aligned_cols=129 Identities=49% Similarity=1.009 Sum_probs=118.2
Q ss_pred eEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccc
Q 016404 186 YVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAI 265 (390)
Q Consensus 186 f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 265 (390)
|..+.+|+.+++++++||+|||+||++||++|+.++|.|.++++++++ ...+++|++|++|.+.+++.++++.++|..+
T Consensus 2 ~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 2 FLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-SGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred cccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 455889999999999999999999999999999999999999999975 2347999999999999999999999999888
Q ss_pred cCCc-hHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCC
Q 016404 266 PYED-RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPF 315 (390)
Q Consensus 266 ~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~ 315 (390)
|+.. +....+++.|++.++|+++|||++|+|+.++++.+...+|+..|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8765 5567899999999999999999999999999999999999999997
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-25 Score=180.24 Aligned_cols=120 Identities=28% Similarity=0.561 Sum_probs=106.3
Q ss_pred CeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcc----cCCceEEEEEecCCCHHHHHHhhhcCC--ccccc
Q 016404 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT----ANHCFEVVLVSTDRDHKEFDLNHSIMP--WLAIP 266 (390)
Q Consensus 193 ~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~----~~~~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~ 266 (390)
+.+++++++||+|+|+|||+||++|+.++|.|.++|+++++. ...+++||+|+.|.+.+.+.++++.++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 456788999999999999999999999999999999988752 124799999999998888999999887 87888
Q ss_pred CCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccC
Q 016404 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKA 312 (390)
Q Consensus 267 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~ 312 (390)
+..+....+++.|++.++|+++|||++|+|+.++|+..+..+|...
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 8776667899999999999999999999999999999888888554
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=173.64 Aligned_cols=129 Identities=47% Similarity=1.009 Sum_probs=118.3
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
++|.+.+|+ +++++++||+|+|+||++||++|+.++|.|.++++++++.+.+++|++|++|.+.+.+++++.+++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 468899999 9999999999999999999999999999999999999876445999999999999999999999999888
Q ss_pred ecCh-hHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccccCCCCCCC
Q 016404 105 PFDE-TLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPF 154 (390)
Q Consensus 105 ~~~~-~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~ 154 (390)
|+.. +....+++.|++.++|+++++|++|+++.+++.+++..++..+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8844 5667899999999999999999999999999999999988888875
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=170.58 Aligned_cols=126 Identities=48% Similarity=0.944 Sum_probs=110.8
Q ss_pred EeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcC-Cccccc
Q 016404 188 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM-PWLAIP 266 (390)
Q Consensus 188 l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~~ 266 (390)
+|.+ +++++++++||+++|+||++||++|+.++|.|+++++++++ ...+++|++|++|.+.+++..+++++ +|+.++
T Consensus 4 ~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~-~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 4 LDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-EGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh-cCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 3444 69999999999999999999999999999999999999975 22479999999999988999999988 688888
Q ss_pred CCc-hHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhh-cCccCCCC
Q 016404 267 YED-RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL-YGAKAFPF 315 (390)
Q Consensus 267 ~~~-~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~-~g~~~~p~ 315 (390)
+.+ .....+++.|+|.++|+++|||++|+|+++++...... +|+.+|||
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 765 34567888999999999999999999999998888776 89999986
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-24 Score=172.42 Aligned_cols=118 Identities=25% Similarity=0.603 Sum_probs=105.1
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhC-----CCcEEEEEEecCCChhHHHHHHHhCC--CcceecC
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR-----GTELEVIFISFDHDENGFEEHFKCMP--WLAVPFD 107 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~-----~~~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~~~ 107 (390)
+++++++||+|+|+|||+||++|+.++|.|.++|++++++ ..++++|+|+.|.+.+.+++|+++++ |+.+|+.
T Consensus 18 ~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~ 97 (146)
T cd03008 18 EIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFE 97 (146)
T ss_pred ccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeeccc
Confidence 5778999999999999999999999999999999988763 23599999999999888999999988 8888886
Q ss_pred hhHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccccCCCCC
Q 016404 108 ETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAY 152 (390)
Q Consensus 108 ~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~ 152 (390)
.+....++++|++.++|+++++|++|+++.+++...|..++..++
T Consensus 98 ~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 98 DEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred chHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 665678999999999999999999999999999999988775543
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-22 Score=161.95 Aligned_cols=127 Identities=43% Similarity=0.924 Sum_probs=110.7
Q ss_pred eeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC-CCcce
Q 016404 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM-PWLAV 104 (390)
Q Consensus 27 ~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~ 104 (390)
+|+|.+ + +++++++||+++|+||++||++|+.++|.|+++++++++++.+++|++|++|.+.+.+++|++++ +|..+
T Consensus 2 ~~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd02964 2 FLLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAV 80 (132)
T ss_pred ccccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEee
Confidence 466766 5 99999999999999999999999999999999999998753349999999999988999999998 68888
Q ss_pred ecCh-hHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccc-cCCCCCCC
Q 016404 105 PFDE-TLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIED-YGADAYPF 154 (390)
Q Consensus 105 ~~~~-~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~-~~~~~~~~ 154 (390)
++.. .....+.+.|++.++|+++++|++|+++.+++.+.+.. ++..+|||
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 8744 45578889999999999999999999999988777666 77777775
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=156.40 Aligned_cols=124 Identities=40% Similarity=0.734 Sum_probs=115.5
Q ss_pred ceeecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHh--CCC
Q 016404 26 EFLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--MPW 101 (390)
Q Consensus 26 ~~l~~~~g~-~~l~-~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--~~~ 101 (390)
..|...+|. +..+ .+.||+|.++|.|.|||||+.++|.|.++|+++++++..++||+||.|.+.+++..|+.. ++|
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW 94 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence 778999999 6666 689999999999999999999999999999999999889999999999999999999995 669
Q ss_pred cceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccccCC
Q 016404 102 LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGA 149 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~ 149 (390)
+.+|+..+..+++.++|++.++|++++++++|+.+.+++...+...+.
T Consensus 95 ~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 95 LAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred EEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 999999999999999999999999999999999999999888887653
|
|
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-21 Score=159.07 Aligned_cols=117 Identities=28% Similarity=0.489 Sum_probs=103.1
Q ss_pred hhccCCceEE-e--CCCCeeeecccCCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016404 179 LAIEGRDYVL-S--RDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~--~~g~~~~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
+|.++|+|++ + .+|+++++++++||+++|+||++ |||+|+.++|.|.+++++|+. .++.+++|+.+.+.. ..
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~---~~v~~v~v~~~~~~~-~~ 77 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD---KGVDVVGVSSDDDPP-VR 77 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTCEEEEEEESSSHH-HH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc---CceEEEEecccCCHH-HH
Confidence 4888999998 5 99999999999999999999999 999999999999999999986 789999999998776 77
Q ss_pred HhhhcCCcccccCCchHHHHHHHHcccc---------ccceEEEECCCCcEEeeC
Q 016404 255 LNHSIMPWLAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~ 300 (390)
++++..+ ..+|+..|....+.+.|++. ++|+++|||++|+|+++.
T Consensus 78 ~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 78 EFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp HHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred HHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 7777644 56777777788999999988 999999999999999984
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=151.79 Aligned_cols=121 Identities=45% Similarity=0.849 Sum_probs=112.2
Q ss_pred eCCCCeeeec-ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhc--CCcccc
Q 016404 189 SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI--MPWLAI 265 (390)
Q Consensus 189 ~~~g~~~~l~-~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--~~~~~~ 265 (390)
..+|..+..+ .++||+|+++|.|.||+||+.+.|.|.++|++.++ ....++||+||.|.+.+++..++.. .+|+.+
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~-~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~i 97 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD-NAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAI 97 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh-cCCceEEEEEecCCCHHHHHHHHHhcCCCeEEe
Confidence 7777777777 78999999999999999999999999999999986 4457999999999999999999984 669999
Q ss_pred cCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCc
Q 016404 266 PYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 310 (390)
Q Consensus 266 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~ 310 (390)
|+.++..+++.++|+|.++|++.++.++|+++..+||..+...|.
T Consensus 98 Pf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 98 PFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred cCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 999999999999999999999999999999999999999999885
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=147.70 Aligned_cols=110 Identities=20% Similarity=0.350 Sum_probs=95.0
Q ss_pred CceEE-eCCCCeeeecccC-CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCC
Q 016404 184 RDYVL-SRDHRKITVSELA-GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 261 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~-gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 261 (390)
|+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++. .++.++.++ +.+.++..++.+.++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~----~~~~vi~v~-~~~~~~~~~~~~~~~ 75 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA----DWLDVVLAS-DGEKAEHQRFLKKHG 75 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc----CCcEEEEEe-CCCHHHHHHHHHHhC
Confidence 67888 8999999999997 9999999999999999999999999988875 468888775 667788888888777
Q ss_pred cccccCCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 262 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
...+|... +..+.+.|++.++|++++||++|+|++++
T Consensus 76 ~~~~p~~~--~~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 76 LEAFPYVL--SAELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCCcEEe--cHHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 65566654 34688999999999999999999999874
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-20 Score=141.90 Aligned_cols=93 Identities=41% Similarity=0.833 Sum_probs=84.9
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcC--CcccccCCchHHHHHHHHc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM--PWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 279 (390)
||+++|+||++||++|++++|.|.+++++|++ ..+++||+|+.|.+.+++.++++.+ +|..+++..+....+.+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK--KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKY 78 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHC
Confidence 79999999999999999999999999999983 4899999999999999999999977 8999999988888999999
Q ss_pred cccccceEEEECCCCcE
Q 016404 280 NIKGIPALVLIGPDGKT 296 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v 296 (390)
+|.++|+++|+|++|+|
T Consensus 79 ~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 79 GINGIPTLVLLDPDGKI 95 (95)
T ss_dssp T-TSSSEEEEEETTSBE
T ss_pred CCCcCCEEEEECCCCCC
Confidence 99999999999999987
|
... |
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=149.07 Aligned_cols=116 Identities=30% Similarity=0.566 Sum_probs=103.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+++|+|++ +.+|+.+++++++||++||.||++ ||+.|+..++.|++++++|++ .++++++|+.|.. ++..++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~---~~~~vi~is~d~~-~~~~~~ 76 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD---KGVQVIGISTDDP-EEIKQF 76 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSSH-HHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc---ceEEeeecccccc-cchhhh
Confidence 5889999999 999999999999999999999999 999999999999999999986 7899999999754 456666
Q ss_pred hhcCCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016404 257 HSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
....+ ..+|+..|....+.+.|++. .+|++||||++|+|+++
T Consensus 77 ~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 77 LEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 66544 67777777889999999998 99999999999999974
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=138.13 Aligned_cols=93 Identities=38% Similarity=0.853 Sum_probs=84.1
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC--CCcceecChhHHHHHHHhcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM--PWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 119 (390)
||+++|+||++||++|++++|.|.++++++++ +.++++|+|++|.+.+.+++++++. +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 89999999999999999999999999999994 4459999999999999999999988 89999998887889999999
Q ss_pred cCCCCeEEEEcCCCcc
Q 016404 120 VDRIPSLIPLASDGTL 135 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i 135 (390)
+.++|+++++|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999985
|
... |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=175.91 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=102.9
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-----CCHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHKE 252 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~~ 252 (390)
.+..+|+|++ +.+|+.+.++ +||+|||+|||+||++|+.++|.|++++++++. .+++||+|+++ .+.++
T Consensus 34 ~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~---~~v~VI~Vs~~~~~~e~~~~~ 108 (521)
T PRK14018 34 VPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF---SSANLITVASPGFLHEKKDGD 108 (521)
T ss_pred ccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEecccccccccHHH
Confidence 3567899999 9999999988 899999999999999999999999999999875 67999999873 23467
Q ss_pred HHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 253 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.++++.+++..+|+..|.+..+++.|+|.++|+++|||++|+|+.+
T Consensus 109 ~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 109 FQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred HHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 77777777777788888888899999999999999999999999988
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-20 Score=158.72 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=95.6
Q ss_pred HHhhccCCceEE-eCC--CCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHH
Q 016404 177 QLLAIEGRDYVL-SRD--HRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~--g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
..+|.++|+|++ +.+ |+.++++.+ +||+++|+||++||++|++++|.|.++++ .+++|++|+.|.+.++
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~-------~~~~vi~v~~~~~~~~ 111 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA-------QGIRVVGMNYKDDRQK 111 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH-------cCCEEEEEECCCCHHH
Confidence 456889999999 777 467777665 79999999999999999999999988743 3578999999888777
Q ss_pred HHHhhhcCCccccc-CCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
..++++.++. .+| ...|....+.+.|++.++|++++||++|+|+++.
T Consensus 112 ~~~~~~~~~~-~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 112 AISWLKELGN-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred HHHHHHHcCC-CCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 8888876653 333 2445667888999999999999999999999883
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=158.95 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=95.2
Q ss_pred hHHhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------
Q 016404 176 EQLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD------- 247 (390)
Q Consensus 176 ~~l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d------- 247 (390)
....|..+|+|++ +.+|+.+++++++||+|||+||++||++|+.++|.|++++++|++ .+++||+|++|
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~---~Gv~VIgV~~d~~~~~e~ 148 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEP 148 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc---CCcEEEEEecccccccCC
Confidence 3456888999999 999999999999999999999999999999999999999999986 78999999975
Q ss_pred CCHHHHHHhhh-cCCcccccCCc--hHHH-HHHHHcc-------------ccccceEEEECCCCcEEeeC
Q 016404 248 RDHKEFDLNHS-IMPWLAIPYED--RARQ-DLCRIFN-------------IKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 248 ~~~~~~~~~~~-~~~~~~~~~~~--~~~~-~l~~~~~-------------v~~~P~~~lid~~G~v~~~~ 300 (390)
.+.++..+++. .++ +.+|+.. |.+. .+...|+ +...|++||||++|+|+.+.
T Consensus 149 ~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~ 217 (236)
T PLN02399 149 GSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY 217 (236)
T ss_pred CCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence 24466777763 333 4556542 2222 2323332 34579999999999999983
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=153.99 Aligned_cols=176 Identities=17% Similarity=0.213 Sum_probs=112.5
Q ss_pred cCCCEEEEEEec---CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 40 CGGKTICLFFSA---NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 40 ~~gk~vll~F~a---~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
.++...++.|++ +||++|+.+.|.++++++++.. +++..+++|.++. ..+++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~----~~i~~v~vd~~~~---------------------~~l~~ 71 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK----LKLEIYDFDTPED---------------------KEEAE 71 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC----ceEEEEecCCccc---------------------HHHHH
Confidence 344444555776 9999999999999999998842 6688888886664 79999
Q ss_pred hcCcCCCCeEEEEcCCCcccc-ccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCC-e
Q 016404 117 RYRVDRIPSLIPLASDGTLIE-EDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHR-K 194 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~-~ 194 (390)
+|+|.++||+++++ +|+.+. +.. .. +........+..........+ . ++.+ .
T Consensus 72 ~~~V~~~Pt~~~f~-~g~~~~~~~~-G~---------~~~~~l~~~i~~~~~~~~~~~-------------~--L~~~~~ 125 (215)
T TIGR02187 72 KYGVERVPTTIILE-EGKDGGIRYT-GI---------PAGYEFAALIEDIVRVSQGEP-------------G--LSEKTV 125 (215)
T ss_pred HcCCCccCEEEEEe-CCeeeEEEEe-ec---------CCHHHHHHHHHHHHHhcCCCC-------------C--CCHHHH
Confidence 99999999999996 676542 211 11 000111111111100000000 0 0000 0
Q ss_pred eeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHH
Q 016404 195 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 274 (390)
Q Consensus 195 ~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (390)
-.+..+.+.++++.||++||++|+...+.++++..++ .++.+..+..+. ...
T Consensus 126 ~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-----~~i~~~~vD~~~-----------------------~~~ 177 (215)
T TIGR02187 126 ELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-----DKILGEMIEANE-----------------------NPD 177 (215)
T ss_pred HHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-----CceEEEEEeCCC-----------------------CHH
Confidence 0112234455677799999999999999888887664 345555555554 467
Q ss_pred HHHHccccccceEEEECCCCc
Q 016404 275 LCRIFNIKGIPALVLIGPDGK 295 (390)
Q Consensus 275 l~~~~~v~~~P~~~lid~~G~ 295 (390)
+++.|+|.++||+++. .+|+
T Consensus 178 ~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 178 LAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred HHHHhCCccCCEEEEe-cCCE
Confidence 8899999999999887 4554
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=146.67 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=96.4
Q ss_pred cCCceEE-eCCC--CeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhh
Q 016404 182 EGRDYVL-SRDH--RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 258 (390)
Q Consensus 182 ~~p~f~l-~~~g--~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 258 (390)
++|+|++ +.+| +.+++++++||+++|+||++||++|++++|.|+++.+++ +++||+|+.+.+.+.+++++.
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------CcEEEEEECCCCHHHHHHHHH
Confidence 5789998 7888 889999999999999999999999999999999987664 388999999888888888887
Q ss_pred cCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 259 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.......++..|....+++.|++.++|++++||++|+|+.+
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 66543333445567789999999999999999999999988
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-19 Score=151.79 Aligned_cols=117 Identities=24% Similarity=0.449 Sum_probs=106.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 257 (390)
.|..+|+|++ +.+|+.+++++++||+++|+||++||++|+...+.|.+++++|++ .++++++|+.|.+.+++.++.
T Consensus 37 ~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 37 VGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE---KGVEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEEcCCCHHHHHHHH
Confidence 5788999999 999999999999999999999999999999999999999999986 679999999999888888888
Q ss_pred hcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 258 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.++ ..+|+..+.+..+.+.|++.++|+++++|++|+++..
T Consensus 114 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 114 NRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 8766 4566666777899999999999999999999999977
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=151.04 Aligned_cols=117 Identities=18% Similarity=0.394 Sum_probs=104.6
Q ss_pred hccCCceEE-eCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 180 AIEGRDYVL-SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
|..+|+|.+ +.+|+.++++++ +|+++||+||++||+.|..+++.|.+++++|++ .++++|+|++|. +.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~---~~v~~v~is~d~~~~~~~d~~ 77 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA---KGVAVVAINSNDIEAYPEDSP 77 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh---CCeEEEEEecCccccccccCH
Confidence 457899999 999999999998 899999999999999999999999999999986 789999999986 46
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
+++.+++...++ .+|+..|....+++.|++..+|+++|||++|+|+++.
T Consensus 78 ~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 78 ENMKAKAKEHGY-PFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHHHHHHCCC-CceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 788888876664 4777777788999999999999999999999999874
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=153.73 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=91.6
Q ss_pred ccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CHHH
Q 016404 181 IEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKE 252 (390)
Q Consensus 181 ~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~ 252 (390)
..+|+|++ +.+|+.+++++++||++||+||++||++|++++|.|++++++|++ .++.|++|++|. +.++
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~---~g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE---QGFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh---CCcEEEEecccccccCCCCCHHH
Confidence 56899999 999999999999999999999999999999999999999999986 789999999863 3345
Q ss_pred HHHhh-hcCCcccccCCc--hHH-HHHHHHcc-------------ccccceEEEECCCCcEEeeC
Q 016404 253 FDLNH-SIMPWLAIPYED--RAR-QDLCRIFN-------------IKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~-~~~~~~~~~~~~--~~~-~~l~~~~~-------------v~~~P~~~lid~~G~v~~~~ 300 (390)
..+++ +.++ +.+|+.. +.+ ......|+ +...|++||||++|+|+.+.
T Consensus 84 ~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 84 IQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred HHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 55554 4433 5566643 122 13333332 56689999999999999983
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=145.01 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=93.4
Q ss_pred CCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-----CCHHHHHHhhhcCCccccc
Q 016404 192 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHKEFDLNHSIMPWLAIP 266 (390)
Q Consensus 192 g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~ 266 (390)
|+++++++++||++||+||++||++|+.++|.|++++++|++ .++.|++|+.+ .+.+.+++++++++ +.+|
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~---~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p 88 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD---DGLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP 88 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc---CCeEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence 578999999999999999999999999999999999999986 78999999863 35677888887766 4678
Q ss_pred CCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 267 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
+..|....+.+.|++.++|++++||++|+|+++.
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 8888888999999999999999999999999884
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=155.03 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=92.3
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------CCH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~ 250 (390)
.+..+|+|++ +.+|+.+++++++||+|||+|||+||++|++++|.|++++++|++ .+++||+|+++ .+.
T Consensus 15 ~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~---~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP---LGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc---CceEEEEecchhccCCCCCCH
Confidence 4677899999 999999999999999999999999999999999999999999986 78999999974 345
Q ss_pred HHHHHhhhcCCcccccCCch------HHHH--------HHHHcccc----cc---ceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHSIMPWLAIPYEDR------ARQD--------LCRIFNIK----GI---PALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~------~~~~--------l~~~~~v~----~~---P~~~lid~~G~v~~~~ 300 (390)
+++.++++..+ +.+|+..+ .... +...|++. .+ |+++|||++|+|+.+.
T Consensus 92 e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 92 KDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred HHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 67888887655 34554321 1111 22234432 22 3799999999999874
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-19 Score=149.70 Aligned_cols=113 Identities=15% Similarity=0.230 Sum_probs=91.4
Q ss_pred CCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CHHHHH
Q 016404 183 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD 254 (390)
Q Consensus 183 ~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~ 254 (390)
.|+|++ +.+|+.+++++++||+|+|+|||+||+ |+.++|.|++++++|++ .++.|++|++|. +.++..
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~~~~~~ 77 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD---RGLVVLGFPCNQFGGQEPGSNEEIK 77 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC---CCEEEEEeccCccccCCCCCHHHHH
Confidence 588999 999999999999999999999999999 99999999999999986 789999999753 346677
Q ss_pred Hhhhc-CCcccccCCchH--HHH-HHHHcc--ccccc-----------eEEEECCCCcEEeeC
Q 016404 255 LNHSI-MPWLAIPYEDRA--RQD-LCRIFN--IKGIP-----------ALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~--~~~-l~~~~~--v~~~P-----------~~~lid~~G~v~~~~ 300 (390)
++++. .+ +.+|+..+. +.. ..+.|+ +.++| +++|||++|+|+.+.
T Consensus 78 ~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~ 139 (152)
T cd00340 78 EFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRF 139 (152)
T ss_pred HHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEE
Confidence 78765 44 456765431 222 345555 45666 799999999999983
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-19 Score=148.40 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=99.8
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+.+|+|++ +.+|+.+++++++||++||+||++| |++|..++|.|+++++++ .+++|++|+.|.. ....++
T Consensus 20 ~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-----~~~~vv~vs~D~~-~~~~~f 93 (167)
T PRK00522 20 VGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-----DNTVVLCISADLP-FAQKRF 93 (167)
T ss_pred CCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-----CCcEEEEEeCCCH-HHHHHH
Confidence 5899999999 8999999999999999999999999 999999999999999887 3689999999853 445667
Q ss_pred hhcCCcccccCCch-HHHHHHHHccccccc---------eEEEECCCCcEEeeC
Q 016404 257 HSIMPWLAIPYEDR-ARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~ 300 (390)
.+..+...+++..| ....+++.||+...| +++|||++|+|++..
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 77666444677777 456999999998777 999999999999884
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=144.10 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=99.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|..+|+|++ +.+|+.+++++++||++||+||++| |++|+.++|.|+++++++ .++.||+|++|. .....++
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-----~~~~vi~Is~d~-~~~~~~~ 75 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-----DNTVVLTISADL-PFAQKRW 75 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-----CCCEEEEEECCC-HHHHHHH
Confidence 4788999999 9999999999999999999999999 699999999999999987 358999999986 4455666
Q ss_pred hhcCCcccccCCchHH-HHHHHHccccc------cceEEEECCCCcEEeeC
Q 016404 257 HSIMPWLAIPYEDRAR-QDLCRIFNIKG------IPALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~-~~l~~~~~v~~------~P~~~lid~~G~v~~~~ 300 (390)
.+.++...++...|.. ..+++.||+.. .|+++|||++|+|++..
T Consensus 76 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 76 CGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred HHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 6666655677777765 89999999863 79999999999999984
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-19 Score=149.94 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=95.0
Q ss_pred HHhhccCCceEE-eCCCC--eeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHH
Q 016404 177 QLLAIEGRDYVL-SRDHR--KITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~g~--~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
..+|.++|+|++ +.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ .++++++|+.+.+.++
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~~~~~ 106 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKDQSQN 106 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCCChHH
Confidence 457899999999 88886 5555665 78999999999999999999999887753 3588999998877777
Q ss_pred HHHhhhcCCccccc-CCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 253 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 253 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..++++.+++ .++ +..|....+.+.|++.++|++++||++|+|+++
T Consensus 107 ~~~~~~~~~~-~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 107 ALKFLKELGN-PYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred HHHHHHHcCC-CCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 7778776653 344 345667789999999999999999999999988
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-18 Score=148.29 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=101.5
Q ss_pred HhhccCCceEE-eCCCCeeeec--ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016404 178 LLAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~--~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
-+|..+|+|++ +.+|+.++++ .++||+++|+||++||++|+.++|.+.++++++ ++.+++|+.| +.++..
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------~~~vv~Is~~-~~~~~~ 119 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------ETDVVMISDG-TPAEHR 119 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------CCcEEEEeCC-CHHHHH
Confidence 35889999999 9999999995 579999999999999999999999999987653 3578888854 566777
Q ss_pred HhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 255 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
+++++++....++. ...++.+.|++..+|+.++||++|+|+++.. ....+.++++.++++.
T Consensus 120 ~~~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~------------~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 120 RFLKDHELGGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL------------TNTREHLESLLEADRE 180 (189)
T ss_pred HHHHhcCCCcceee--chhHHHHhccCCccceEEEECCCCeEEEccC------------CCCHHHHHHHHHHHHc
Confidence 88876653222222 2468899999999999999999999997621 1244556666665543
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=147.00 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=98.8
Q ss_pred hhccCCceEE-eCCC----CeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016404 179 LAIEGRDYVL-SRDH----RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g----~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
+|+.+|+|.+ +.+| +.+++++++||++||+|| ++||++|..+++.|++++++|.+ .++.|++|++|...
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~---~~v~vv~Is~d~~~~~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK---LNAEVLGVSTDSHFSH 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEecCCHHHH
Confidence 4788999999 7776 799999999999999999 89999999999999999999986 78999999998643
Q ss_pred HHHHHhhhc---CCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
..+.+.... ..-+.+++..|....+++.||+. .+|+++|||++|+|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred HHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 223333221 12245777778889999999986 678999999999999984
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=137.17 Aligned_cols=109 Identities=23% Similarity=0.405 Sum_probs=92.8
Q ss_pred ceeecCCCc-cccCccC-CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 26 EFLLSRQGK-VPLSSCG-GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~-gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
+.+.+.+|+ +++++++ ||+++|+||++||++|+.++|.++++++++.+. +.++.++ |.+.+...+++++++...
T Consensus 3 f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 3 FDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred ceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHHHHHhCCCC
Confidence 458889999 9999997 999999999999999999999999999887543 7788775 667788999999887655
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
+|...+ ..+.+.|+++.+|+++++|++|+++++++
T Consensus 79 ~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~~ 113 (114)
T cd02967 79 FPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKGL 113 (114)
T ss_pred CcEEec--HHHHhhcCCCCcCeEEEECCCCeEEeccc
Confidence 665432 45889999999999999999999988764
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-19 Score=167.80 Aligned_cols=87 Identities=24% Similarity=0.399 Sum_probs=72.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...++-+++. +...-.....++|.||||||+||++.+|.+.+++..++..+ -.|..+.+|++++
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~--s~i~LakVDat~~------------- 88 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEG--SPVKLAKVDATEE------------- 88 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccC--CCceeEEeecchh-------------
Confidence 4445555565 66666667899999999999999999999999999999875 3377778888776
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
..+|.+|+|+++||+.++. +|+.
T Consensus 89 --------~~~~~~y~v~gyPTlkiFr-nG~~ 111 (493)
T KOG0190|consen 89 --------SDLASKYEVRGYPTLKIFR-NGRS 111 (493)
T ss_pred --------hhhHhhhcCCCCCeEEEEe-cCCc
Confidence 8999999999999999995 7774
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=147.96 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=98.8
Q ss_pred HhhccCCceEE-e-CCCC--eeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016404 178 LLAIEGRDYVL-S-RDHR--KITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 178 l~g~~~p~f~l-~-~~g~--~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
.+|..+|+|++ + .+|+ .+++++++||++||+|| ++||++|..+++.|++++++|++ .+++|++|+.|...
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~---~gv~vi~VS~D~~~~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK---LGVEVYSVSTDTHFVH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHH
Confidence 46899999999 6 5676 68888999999999999 99999999999999999999986 78999999999742
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
++|.+......-+.+|+..|....+++.||+. ..|++||||++|+|++..
T Consensus 80 ~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 80 KAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred HHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 33333332222355677778888999999986 469999999999999884
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=144.81 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=100.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|..+|+|++ +.+|+.+++++++||++||+||++ ||+.|..+++.|.++++++++ .++++|+|+.|. .++..++
T Consensus 6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~---~~v~vi~Is~d~-~~~~~~~ 81 (154)
T PRK09437 6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK---AGVVVLGISTDK-PEKLSRF 81 (154)
T ss_pred CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHH
Confidence 4788999999 999999999999999999999987 677799999999999999986 789999999984 5777777
Q ss_pred hhcCCcccccCCchHHHHHHHHcccccc------------ceEEEECCCCcEEee
Q 016404 257 HSIMPWLAIPYEDRARQDLCRIFNIKGI------------PALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~------------P~~~lid~~G~v~~~ 299 (390)
.+.++ ..+|+..|....+.+.||+... |+++|||++|+|+..
T Consensus 82 ~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 82 AEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 77665 4567777777889999998654 778999999999988
|
|
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=141.07 Aligned_cols=113 Identities=26% Similarity=0.419 Sum_probs=100.8
Q ss_pred cCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhc
Q 016404 182 EGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 259 (390)
Q Consensus 182 ~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 259 (390)
++|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|.++++++.+ .+++||+|+.|. .+.+.++...
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~d~-~~~~~~~~~~ 77 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA---LGAVVIGVSPDS-VESHAKFAEK 77 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHHHHH
Confidence 5789999 9999999999999999999999 58999999999999999999986 789999999985 5677777776
Q ss_pred CCcccccCCchHHHHHHHHcccccc---------ceEEEECCCCcEEee
Q 016404 260 MPWLAIPYEDRARQDLCRIFNIKGI---------PALVLIGPDGKTIST 299 (390)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~v~~~ 299 (390)
++ ..+|+..|....+.+.||+... |+++|||++|+|++.
T Consensus 78 ~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 78 YG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred hC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 66 4677777878899999999988 999999999999998
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-18 Score=144.52 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=89.2
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEE-EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 180 AIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
+...|+|++ +.+|+.+++++++||+| |+.|||+||++|+.++|.|++++++|++ .++.|++|++|. +.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~---~gv~vv~vs~~~~~~~~~~~~ 93 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS---QGLEILAFPCNQFMEQEPWDE 93 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh---CCcEEEEEecccccccCCCCH
Confidence 456799999 99999999999999965 4566999999999999999999999986 789999999752 33
Q ss_pred HHHHHhhh-cCCcccccCCch--HH----HHHH----H--------Hccccccce---EEEECCCCcEEeeC
Q 016404 251 KEFDLNHS-IMPWLAIPYEDR--AR----QDLC----R--------IFNIKGIPA---LVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~-~~~~~~~~~~~~--~~----~~l~----~--------~~~v~~~P~---~~lid~~G~v~~~~ 300 (390)
++..+++. .++ +.+|...+ .+ ..+. . .+++.++|+ +||||++|+|+.+.
T Consensus 94 ~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 94 PEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred HHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 56667765 333 45665422 11 1222 1 235778995 69999999999983
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-18 Score=140.28 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=99.7
Q ss_pred hhccCCceEE-eCCCCeeeecccCC-cEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 255 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 255 (390)
+|..+|+|.+ +.+|+.+++++++| |+++|.|| ++||+.|...+|.|+++++++++ .++++++|+.|. .+..++
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~v~vi~vs~d~-~~~~~~ 78 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA---AGAEVLGISVDS-PFSLRA 78 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh---CCCEEEEecCCC-HHHHHH
Confidence 4788999999 89999999999999 99988887 99999999999999999999986 789999999885 455666
Q ss_pred hhhcCCcccccCCchHH--HHHHHHccccc----c--ceEEEECCCCcEEeeC
Q 016404 256 NHSIMPWLAIPYEDRAR--QDLCRIFNIKG----I--PALVLIGPDGKTISTN 300 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~--~~l~~~~~v~~----~--P~~~lid~~G~v~~~~ 300 (390)
+.+.++ +.+|+..|.. ..+++.|++.. + |+++|||++|+|+++.
T Consensus 79 ~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~ 130 (149)
T cd03018 79 WAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW 130 (149)
T ss_pred HHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence 666655 4667777755 88999999873 3 4899999999999983
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-18 Score=138.13 Aligned_cols=105 Identities=20% Similarity=0.254 Sum_probs=91.7
Q ss_pred Cc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-----CChhHHHHHHHhCCCcceec
Q 016404 33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 33 g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~~ 106 (390)
|+ +++++++||+++|+||++||++|+.++|.|+++++++++.+ +++++|+.+ .+.+.+++|++++. +.+|+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYG-ITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcC-CCCCE
Confidence 45 99999999999999999999999999999999999999766 899999863 35667889999877 45677
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
..+....+.+.|++.++|++++||++|++++...
T Consensus 90 ~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~ 123 (126)
T cd03012 90 ANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHF 123 (126)
T ss_pred EECCchHHHHHhCCCcCCeEEEECCCCcEEEEEe
Confidence 6667789999999999999999999999987543
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=139.84 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=86.6
Q ss_pred ceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------CCHHHHHHh
Q 016404 185 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEFDLN 256 (390)
Q Consensus 185 ~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~ 256 (390)
+|++ +.+|+++++++++||++||+|||+||++|+.++|.|++++++|++ .++.|++|+++ .+.+...++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~---~~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP---SHFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh---CCeEEEEEeccccccCCCCCHHHHHHH
Confidence 5778 899999999999999999999999999999999999999999986 78999999952 234667777
Q ss_pred hhc-CCcccccCCch-----HHHHHHHHccc---cccce----EEEECCCCcEEee
Q 016404 257 HSI-MPWLAIPYEDR-----ARQDLCRIFNI---KGIPA----LVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~-~~~~~~~~~~~-----~~~~l~~~~~v---~~~P~----~~lid~~G~v~~~ 299 (390)
++. ++ +.+|...+ ........|.+ .++|+ +||||++|+|+.+
T Consensus 81 ~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 81 ARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred HHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEE
Confidence 754 44 45665432 11122223332 35898 9999999999998
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=140.99 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=98.8
Q ss_pred HhhccCCceEE----eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016404 178 LLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 178 l~g~~~p~f~l----~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
.+|.++|+|+. +.+...+++++++||++||+|| ++||+.|..+++.|.+++++|.+ .+++|++||.|...
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~---~g~~vigIS~D~~~~~ 79 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK---LGVDVYSVSTDTHFTH 79 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEeCCCHHHH
Confidence 46899999997 3445577888999999999999 99999999999999999999986 78999999998642
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHccc----ccc--ceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI----KGI--PALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v----~~~--P~~~lid~~G~v~~~~ 300 (390)
.+|.+......-+.+|+..|.+..+++.||+ .++ |+++|||++|+|++..
T Consensus 80 ~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~ 135 (187)
T PRK10382 80 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 135 (187)
T ss_pred HHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence 3344333222235678888889999999998 355 9999999999999884
|
|
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=132.89 Aligned_cols=116 Identities=21% Similarity=0.335 Sum_probs=102.4
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+++|+|++ +.+|+.++|++++||+|||+|| ..++|.|..++-.+++.+.+|.+ .+.+|++||.|. ....++|
T Consensus 6 ~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~---~~a~V~GIS~Ds-~~~~~~F 81 (157)
T COG1225 6 VGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK---LGAVVLGISPDS-PKSHKKF 81 (157)
T ss_pred CCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh---CCCEEEEEeCCC-HHHHHHH
Confidence 5899999999 9999999999999999999999 57888899999999999999987 799999999995 4455566
Q ss_pred hhcCCcccccCCchHHHHHHHHcccc------------ccceEEEECCCCcEEee
Q 016404 257 HSIMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 299 (390)
...++ ++++.+.|.+..++++||+. ..+++||||++|+|++.
T Consensus 82 ~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 82 AEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred HHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence 66555 56899999999999999983 35889999999999988
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=130.81 Aligned_cols=110 Identities=28% Similarity=0.518 Sum_probs=99.2
Q ss_pred eEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC-HHHHHHhhhcCCcc
Q 016404 186 YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMPWL 263 (390)
Q Consensus 186 f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~ 263 (390)
|.+ +.+|+.+++++++||+++|+||++||++|+..++.|.++.+++.+ .++.++.|++|.. .+.+.++...++ .
T Consensus 2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~~v~~d~~~~~~~~~~~~~~~-~ 77 (116)
T cd02966 2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD---DGVEVVGVNVDDDDPAAVKAFLKKYG-I 77 (116)
T ss_pred ccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCC---CCeEEEEEECCCCCHHHHHHHHHHcC-C
Confidence 556 789999999999999999999999999999999999999999875 7799999999987 889999988777 5
Q ss_pred cccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 264 AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 264 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+++..+....+.+.|++.++|+++|+|++|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 78 TFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 666666667889999999999999999999999976
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=137.52 Aligned_cols=109 Identities=28% Similarity=0.489 Sum_probs=96.6
Q ss_pred ecCCCc-cccCccCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 29 LSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 29 ~~~~g~-~~l~~~~gk~vll~F~a~-~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
.+.+|+ +++++++||+++|+||++ |||+|+..+|.+.++++++++.+ +++++|+.+.+.. ..+++++.+ ..+|+
T Consensus 14 ~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~~~~~~~-~~~~~ 89 (146)
T PF08534_consen 14 LDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VREFLKKYG-INFPV 89 (146)
T ss_dssp EETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHHHHHHTT-TTSEE
T ss_pred ecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHHHHHhhC-CCceE
Confidence 459999 999999999999999999 99999999999999999998887 8999999998777 888888855 55666
Q ss_pred ChhHHHHHHHhcCcC---------CCCeEEEEcCCCcccccccc
Q 016404 107 DETLHKKLRIRYRVD---------RIPSLIPLASDGTLIEEDLI 141 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~---------~~P~~~~~d~~G~i~~~~~~ 141 (390)
..+....+.+.|++. ++|+++++|++|+|++....
T Consensus 90 ~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 90 LSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp EEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred EechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeC
Confidence 666678999999988 99999999999999976643
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=132.13 Aligned_cols=106 Identities=20% Similarity=0.378 Sum_probs=92.1
Q ss_pred CceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC-HHHHHHhhhcCC
Q 016404 184 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMP 261 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~ 261 (390)
|+|.+ +.+|+.+++.+++||+++|+||++||++|+.++|.|.++++++ .+++|+.|.+ .+++.++.+.++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~ 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--------PVVSVALRSGDDGAVARFMQKKG 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC--------CEEEEEccCCCHHHHHHHHHHcC
Confidence 67888 8999999999999999999999999999999999999998764 4888888764 677788877766
Q ss_pred cccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 262 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.+|...+.+..+++.|+|.++|+++++|++| ++++
T Consensus 73 -~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 73 -YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred -CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 46777667778899999999999999999999 8776
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-17 Score=141.33 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=98.4
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEE-EEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--HHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~~ 254 (390)
+|..+|+|++ +..| .+++++++||+++| +||++||+.|..+++.|++++++|++ .+++|++|++|... .+|.
T Consensus 4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~---~~~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK---LGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHH
Confidence 5889999999 6666 79999999997766 68999999999999999999999986 78999999999743 3444
Q ss_pred Hh-hhcCC-cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 255 LN-HSIMP-WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~-~~~~~-~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
+. ....+ ...+|+..|.+..+++.||+. .+|+++|||++|+|++..
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 33 23333 256888888889999999984 589999999999999873
|
|
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-17 Score=133.18 Aligned_cols=114 Identities=21% Similarity=0.306 Sum_probs=99.1
Q ss_pred CCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcC
Q 016404 183 GRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 260 (390)
Q Consensus 183 ~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 260 (390)
+|+|++ +.+|+.+++++++||+++|+|| ++||+.|...+|.|++++++++. .++.+++|+.|. .....++.+.+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~~~~i~is~d~-~~~~~~~~~~~ 77 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK---GGAEVLGVSVDS-PFSHKAWAEKE 77 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-HHHHHHHHhcc
Confidence 689999 9999999999999999999999 78999999999999999999975 789999999874 45666777766
Q ss_pred CcccccCCchHHHHHHHHccccccc---------eEEEECCCCcEEeeC
Q 016404 261 PWLAIPYEDRARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN 300 (390)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~ 300 (390)
+-..+++..|....+.+.||+...| +++|||++|+|+++.
T Consensus 78 ~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 78 GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred cCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 3456777777778999999988665 899999999999984
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-17 Score=132.05 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=91.5
Q ss_pred ceeecCCC--c-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 26 EFLLSRQG--K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 26 ~~l~~~~g--~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
+.+.+.+| + +++++++||+++|+||++||++|+.++|.|+++.+++ + +++++|+.+.+.+.+++|+++....
T Consensus 6 f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~~~~~ 80 (127)
T cd03010 6 FSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLARHGNP 80 (127)
T ss_pred cccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHhcCCC
Confidence 44777888 7 9999999999999999999999999999999988764 2 8899999988888999999876643
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
..+...+....+++.|++.++|+.+++|++|+++.+.
T Consensus 81 ~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~ 117 (127)
T cd03010 81 YAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKH 117 (127)
T ss_pred CceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEE
Confidence 2233344567899999999999999999999988543
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-17 Score=141.42 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=102.4
Q ss_pred HhhccCCceEE-eCCCCeeeecccCCcEE-EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC--HHHH
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKEF 253 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~gk~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~~ 253 (390)
++|+.+|+|++ +.+|+...+++++||++ |++||++|||.|..+++.|++++++|++ .+++|++||+|.. ...|
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~---~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE---LNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHH
Confidence 57999999999 88999888899999975 6799999999999999999999999987 7899999999974 4567
Q ss_pred HHhhhcC--CcccccCCchHHHHHHHHcccc-------ccceEEEECCCCcEEee
Q 016404 254 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 254 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 299 (390)
.++++.. .-+.+|+..|.+..+++.||+. .+|++||||++|+|+..
T Consensus 80 ~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 80 VEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred HHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 7766542 1356888888888999999983 68999999999999987
|
|
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-17 Score=132.28 Aligned_cols=117 Identities=26% Similarity=0.533 Sum_probs=94.8
Q ss_pred CCceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCCC---HHHHHHhh
Q 016404 183 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEFDLNH 257 (390)
Q Consensus 183 ~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~~~~~ 257 (390)
+|+|++ +.+|+.+++.+++||++||+||++||++ |..+++.|+++++++++....++++++|++|.. .+.++++.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 689999 9999999999999999999999999998 999999999999999851113699999999863 46677777
Q ss_pred hcCC--cccccCCchHHHHHHHHcccccc--------------ceEEEECCCCcEEee
Q 016404 258 SIMP--WLAIPYEDRARQDLCRIFNIKGI--------------PALVLIGPDGKTIST 299 (390)
Q Consensus 258 ~~~~--~~~~~~~~~~~~~l~~~~~v~~~--------------P~~~lid~~G~v~~~ 299 (390)
+.++ |..+....+....+++.||+... |+++|||++|+|+..
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 82 KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 7654 44333333345789999997654 469999999999986
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-17 Score=138.19 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=78.8
Q ss_pred CCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEE------EEEecCCCHHHHHHhhh----cCC
Q 016404 192 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEV------VLVSTDRDHKEFDLNHS----IMP 261 (390)
Q Consensus 192 g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~v------v~v~~d~~~~~~~~~~~----~~~ 261 (390)
.+.++.++++||++||+|||+||++|+.+.|.|.++.+ .++.+ ++|+.|.+......+++ +..
T Consensus 49 y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~-------~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~ 121 (184)
T TIGR01626 49 YQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA-------AKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGK 121 (184)
T ss_pred ceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH-------cCCCcccccceEEEECccchhhHHHHHHHHHHHhc
Confidence 45677888999999999999999999999999999933 34667 99999876544334433 222
Q ss_pred cccc---cCCchHHHHHHHHccccccceE-EEECCCCcEEee
Q 016404 262 WLAI---PYEDRARQDLCRIFNIKGIPAL-VLIGPDGKTIST 299 (390)
Q Consensus 262 ~~~~---~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~v~~~ 299 (390)
..+ ++..|....+...|++.++|++ |+||++|+|+++
T Consensus 122 -~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 122 -KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred -ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 233 3666667788999999999988 899999999998
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.8e-17 Score=171.10 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=100.5
Q ss_pred hhccCCceEE-e--CCCCeeee-cccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec---CC--C
Q 016404 179 LAIEGRDYVL-S--RDHRKITV-SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DR--D 249 (390)
Q Consensus 179 ~g~~~p~f~l-~--~~g~~~~l-~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~---d~--~ 249 (390)
.|..+|+|.. + .+|+++++ ++++||+|||+|||+||++|+.++|.|++++++|++ .++.||+|++ |. +
T Consensus 393 ~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~---~~~~vvgV~~~~~D~~~~ 469 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD---QPFTVVGVHSAKFDNEKD 469 (1057)
T ss_pred cCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC---CCeEEEEEeccccccccc
Confidence 4788899987 3 68999998 689999999999999999999999999999999975 6799999974 33 4
Q ss_pred HHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 250 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+++++++...+ +.+|...|....+.+.|+|.++|+++|||++|+|+.+
T Consensus 470 ~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 470 LEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred HHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEE
Confidence 567777877666 4566666777889999999999999999999999988
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=137.68 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=96.8
Q ss_pred HhhccCCceEE-eC--CCCe---eeeccc-CCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC
Q 016404 178 LLAIEGRDYVL-SR--DHRK---ITVSEL-AGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 249 (390)
Q Consensus 178 l~g~~~p~f~l-~~--~g~~---~~l~~~-~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~ 249 (390)
++|..+|+|++ +. +|+. ++++++ +||++||+||+. ||+.|..+++.|++++++|++ .+++|++|++|..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~---~g~~vigvS~D~~ 79 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK---RGVEVVGVSFDSE 79 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCH
Confidence 46899999998 43 3454 445554 799999999995 999999999999999999987 7899999999964
Q ss_pred H--HHHHHhh-hcCC--cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 250 H--KEFDLNH-SIMP--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 250 ~--~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
. ..|.+.. +..+ -+.+|+..|....+++.||+. ++|.++|||++|+|++..
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~ 141 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQV 141 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEE
Confidence 3 4444432 2222 257888888889999999997 799999999999999873
|
|
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=132.41 Aligned_cols=113 Identities=22% Similarity=0.427 Sum_probs=94.1
Q ss_pred CCceEE-eCCCCeeeecccC-Cc-EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhc
Q 016404 183 GRDYVL-SRDHRKITVSELA-GK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 259 (390)
Q Consensus 183 ~p~f~l-~~~g~~~~l~~~~-gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 259 (390)
+|+|++ +.+|+.++++++. ++ ++|++||++||++|+.++|.|+++++++.+ .++.||+|+.|... ....+.+.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~---~~v~vv~V~~~~~~-~~~~~~~~ 77 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA---LGVELVAVGPESPE-KLEAFDKG 77 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh---cCeEEEEEeCCCHH-HHHHHHHh
Confidence 689999 8999999999885 35 555555799999999999999999999986 78999999988654 33345554
Q ss_pred CCcccccCCchHHHHHHHHcccc-----------------------------ccceEEEECCCCcEEeeC
Q 016404 260 MPWLAIPYEDRARQDLCRIFNIK-----------------------------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~v~~~~ 300 (390)
.. +.+|+..|.+..+.+.||+. .+|+++|||++|+|++.+
T Consensus 78 ~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 78 KF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred cC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 43 57888888889999999984 799999999999999874
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=128.42 Aligned_cols=109 Identities=28% Similarity=0.504 Sum_probs=96.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~-~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.+.+.+|+ ++|++++||+++|.||++ ||++|+..++.|+++++++++.+ +++++|+.|.. +..+++.+..+ .
T Consensus 7 ~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~-~~~~~~~~~~~-~ 82 (124)
T PF00578_consen 7 DFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDP-EEIKQFLEEYG-L 82 (124)
T ss_dssp CEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSH-HHHHHHHHHHT-C
T ss_pred CcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccc-cchhhhhhhhc-c
Confidence 3458899999 999999999999999999 99999999999999999999877 99999999744 46788888766 5
Q ss_pred ceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccc
Q 016404 103 AVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIE 137 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~ 137 (390)
.+|+..+....+++.|++. .+|+++++|++|+|++
T Consensus 83 ~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 83 PFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp SSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred ccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 6666666778999999998 9999999999999876
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=153.65 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=96.3
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-----CChhHHHHHHHh
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHFKC 98 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~ 98 (390)
.+++.+.+|+ +.++ +||+|||+|||+||++|+.++|.|++++++++..+ ++||.|+++ .+...++++++.
T Consensus 40 ~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~~~~~~~ 115 (521)
T PRK14018 40 TLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAG 115 (521)
T ss_pred CeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHHHHHHHh
Confidence 4568999999 8887 89999999999999999999999999999998655 889999873 234568888888
Q ss_pred CCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 99 MPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+.+..+|++.+....+++.|++.++|++++||++|+++.+.
T Consensus 116 ~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~ 156 (521)
T PRK14018 116 LDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIV 156 (521)
T ss_pred CCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEE
Confidence 88777888777788999999999999999999999998554
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-16 Score=127.58 Aligned_cols=105 Identities=16% Similarity=0.311 Sum_probs=79.2
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.+||++||+|||+||++|+.+.|.|.+++++|. ..+.++.|++|.+. ...+++.|
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~----~~~~~v~v~vd~~~---------------------~~~~~~~~ 72 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG----DQVNFVMLNVDNPK---------------------WLPEIDRY 72 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc----cCeeEEEEEcCCcc---------------------cHHHHHHc
Confidence 367999999999999999999999999999986 45789999888642 24678899
Q ss_pred cccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCCCCCccccCCC
Q 016404 280 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKH 343 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p~~~~~~~~ 343 (390)
+|.++|++++||++|+++.+ ..|... .++|.+.+++...+.|..-....|
T Consensus 73 ~V~~iPt~v~~~~~G~~v~~-------~~G~~~-------~~~l~~~l~~l~~~~~~~~~~~~~ 122 (142)
T cd02950 73 RVDGIPHFVFLDREGNEEGQ-------SIGLQP-------KQVLAQNLDALVAGEPLPYANAVG 122 (142)
T ss_pred CCCCCCEEEEECCCCCEEEE-------EeCCCC-------HHHHHHHHHHHHcCCCCCcccccC
Confidence 99999999999999999987 345443 344555555544444433333333
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=139.17 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=99.2
Q ss_pred HHhhccCCceEE-e-CCC--Ceeeeccc-CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC-
Q 016404 177 QLLAIEGRDYVL-S-RDH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD- 249 (390)
Q Consensus 177 ~l~g~~~p~f~l-~-~~g--~~~~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~- 249 (390)
.++|+.+|+|++ + .+| +.++++++ +||++||+|| ++||++|..+++.|++++++|++ .+++|++|++|..
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~---~gv~VigIS~Ds~~ 144 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE---RGVKVLGVSVDSPF 144 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCHH
Confidence 468999999998 4 345 46899998 8888888877 89999999999999999999987 7899999999973
Q ss_pred -HHHHHHh-hhcC--CcccccCCchHHHHHHHHcccc-----ccceEEEECCCCcEEeeC
Q 016404 250 -HKEFDLN-HSIM--PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 250 -~~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~ 300 (390)
..+|.+. .+.. .-+.+|+..|.+..+++.||+. ..|+++|||++|+|++..
T Consensus 145 ~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 145 SHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred HHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 2445443 2221 2356888888889999999985 589999999999999884
|
|
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=133.32 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=79.2
Q ss_pred ccCCceEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcC
Q 016404 181 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 260 (390)
Q Consensus 181 ~~~p~f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 260 (390)
.+.++|.+ .+|+.+++++++ +|+||++||++|++++|.|++++++|+ ++|++|++|...+
T Consensus 53 ~~~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g------~~Vi~Vs~D~~~~--------- 112 (181)
T PRK13728 53 PAPRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG------FSVFPYTLDGQGD--------- 112 (181)
T ss_pred CCCCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC------CEEEEEEeCCCCC---------
Confidence 35677775 599999999997 777999999999999999999999973 7899999986531
Q ss_pred CcccccCCch-HHHHHHHHccc--cccceEEEECCCCcEEe
Q 016404 261 PWLAIPYEDR-ARQDLCRIFNI--KGIPALVLIGPDGKTIS 298 (390)
Q Consensus 261 ~~~~~~~~~~-~~~~l~~~~~v--~~~P~~~lid~~G~v~~ 298 (390)
..+|...+ ....+.+.|++ .++|++||||++|+++.
T Consensus 113 --~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 --TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred --CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 46676553 45667888995 69999999999999975
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-16 Score=135.94 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=97.8
Q ss_pred HhhccCCceEE-eCCCCeeee-cccCCcEEEE-EEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHH--H
Q 016404 178 LLAIEGRDYVL-SRDHRKITV-SELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK--E 252 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l-~~~~gk~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~--~ 252 (390)
.+|..+|+|++ +.+|+ +.+ ++++||+++| +||++||+.|..+++.|++++++|++ .+++|++||+|.... +
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~---~g~~VigvS~Ds~~~h~a 83 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK---LNTELIGLSVDSNISHIE 83 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEECCCHHHHHH
Confidence 46999999999 77786 555 5579997665 88999999999999999999999987 789999999997543 5
Q ss_pred HHHhhhcC-C-cccccCCchHHHHHHHHcccc-------ccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIM-P-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~~ 300 (390)
|.++.... + -..+|...|.+..+++.||+. ..|+++|||++|+|++..
T Consensus 84 w~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 140 (215)
T PRK13191 84 WVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLIL 140 (215)
T ss_pred HHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEE
Confidence 66655431 1 356788888889999999973 479999999999999873
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-17 Score=133.93 Aligned_cols=112 Identities=19% Similarity=0.290 Sum_probs=87.5
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
.++|.+.+|+ +++++++||+|+|+||++||+ |+.++|.|+++++++++++ +++++|++|. +.+..++|+
T Consensus 4 ~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 4 DFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred eeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHHHH
Confidence 3568899999 999999999999999999999 9999999999999998777 9999999863 345788999
Q ss_pred Hh-CCCcceecChh--HHHH-HHHhcC--cCCCC-----------eEEEEcCCCccccccc
Q 016404 97 KC-MPWLAVPFDET--LHKK-LRIRYR--VDRIP-----------SLIPLASDGTLIEEDL 140 (390)
Q Consensus 97 ~~-~~~~~~~~~~~--~~~~-l~~~~~--v~~~P-----------~~~~~d~~G~i~~~~~ 140 (390)
++ ++ +.+|+..+ .... ....|+ +..+| +.+++|++|+++++..
T Consensus 81 ~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~ 140 (152)
T cd00340 81 ETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFA 140 (152)
T ss_pred HHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEEC
Confidence 86 55 45555321 1222 334444 34555 8999999999997654
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-16 Score=134.58 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=95.1
Q ss_pred hhccCCceEE-eCCCCeeeecccCC-cEE-EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--HHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAG-KTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF 253 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~g-k~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~ 253 (390)
+|..+|+|++ +.+| .+++++++| |++ |++||++||+.|..+++.|++++++|++ .+++|++|++|... .+|
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~---~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK---RNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHHH
Confidence 4788999999 6666 589999998 654 5689999999999999999999999987 78999999999743 334
Q ss_pred HHhhhcC--CcccccCCchHHHHHHHHcccc--------ccceEEEECCCCcEEeeC
Q 016404 254 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK--------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 254 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~--------~~P~~~lid~~G~v~~~~ 300 (390)
.+.+... .-+.+|+..|.+..+++.||+. ..|++||||++|+|++..
T Consensus 77 ~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~ 133 (203)
T cd03016 77 IEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL 133 (203)
T ss_pred HhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEE
Confidence 4433321 2356788888889999999975 245799999999999873
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=133.42 Aligned_cols=111 Identities=24% Similarity=0.496 Sum_probs=98.8
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...+.+.+|+ +++++++||+++|+||++||++|+...+.|.++++++++.+ +++++|+.|.+.+.++++.++++ +.
T Consensus 43 ~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~~~~~-~~ 119 (173)
T PRK03147 43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFVNRYG-LT 119 (173)
T ss_pred CcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHHHHhC-CC
Confidence 4568899999 99999999999999999999999999999999999998765 89999999999889999999876 45
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+++..+....+.+.|++.++|+++++|++|+++..
T Consensus 120 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 120 FPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred ceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 56655566899999999999999999999998743
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=135.44 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=87.5
Q ss_pred cceeecCCC--c-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEFLLSRQG--K-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g--~-~~l~~~-~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.+.+.+.+| + ++++.+ +||+++|+||++||++|++++|.|.++++ .+ ++|++|+.|.+.+..++|++++.
T Consensus 47 ~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~~~~~~~~~ 120 (185)
T PRK15412 47 KFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELG 120 (185)
T ss_pred CcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHHHHHHHHcC
Confidence 344777774 6 777665 79999999999999999999999988764 24 88999999888888889999776
Q ss_pred Cccee-cChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016404 101 WLAVP-FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 101 ~~~~~-~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
. .+| ...+....+...|++.++|+.+++|++|+++++..
T Consensus 121 ~-~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~ 160 (185)
T PRK15412 121 N-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA 160 (185)
T ss_pred C-CCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEe
Confidence 3 233 23344567889999999999999999999987654
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=133.26 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=98.3
Q ss_pred HhhccCCceEE-----eCCCCeeeecccCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHH
Q 016404 178 LLAIEGRDYVL-----SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 251 (390)
Q Consensus 178 l~g~~~p~f~l-----~~~g~~~~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~ 251 (390)
.+|.++|+|++ +.+|+++++++++||+++|+||+ .||+.|..+++.|.+++++|++ .+++||+|++|....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~---~g~~vv~IS~d~~~~ 83 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE---LNCEVLACSMDSEYA 83 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEeCCCHHH
Confidence 36899999995 34668999999999999999995 8899999999999999999987 789999999997543
Q ss_pred --HHHHhhhc---CCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016404 252 --EFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 252 --~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
.|...... ..-+.+|+..|....+++.||+. .+|+.+|||++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence 22211111 22367889899899999999985 47999999999999986
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-16 Score=135.68 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=88.1
Q ss_pred cCcceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHH
Q 016404 23 EGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEE 94 (390)
Q Consensus 23 ~~~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~ 94 (390)
...+++.+.+|+ +++++++||+|||+|||+||++|+.++|.|++++++++++| ++|++|++| .+.+.+++
T Consensus 19 ~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e~~~~ 96 (199)
T PTZ00056 19 IYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTKDIRK 96 (199)
T ss_pred CCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHHHHHH
Confidence 345668999999 99999999999999999999999999999999999999887 999999985 34567899
Q ss_pred HHHhCCCcceecChh------HHH--------HHHHhcCcC----CC---CeEEEEcCCCccccccc
Q 016404 95 HFKCMPWLAVPFDET------LHK--------KLRIRYRVD----RI---PSLIPLASDGTLIEEDL 140 (390)
Q Consensus 95 ~~~~~~~~~~~~~~~------~~~--------~l~~~~~v~----~~---P~~~~~d~~G~i~~~~~ 140 (390)
|+++++ +.+|+..+ ... .+...|++. .+ |+.+|+|++|+++.+..
T Consensus 97 f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 97 FNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred HHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 998776 34454211 111 122334432 22 47999999999986543
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=143.76 Aligned_cols=184 Identities=20% Similarity=0.293 Sum_probs=121.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.++.++|.||++||++|+++.|.+.++...+++. +....+|++.. ..+|++|++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-----~~~~~vd~~~~---------------------~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-----VKIGAVDCDEH---------------------KDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-----eEEEEeCchhh---------------------HHHHHhcCC
Confidence 4689999999999999999999999999999874 66667776664 899999999
Q ss_pred CCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCCeeeecc-
Q 016404 121 DRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSE- 199 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~~~~l~~- 199 (390)
.++||+.++.+...++.... ................. ......+.-+....-..+..-.
T Consensus 100 ~gfPtl~~f~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~~l~~~~~~~~~~ 159 (383)
T KOG0191|consen 100 QGFPTLKVFRPGKKPIDYSG-----------PRNAESLAEFLIKELEP---------SVKKLVEGEVFELTKDNFDETVK 159 (383)
T ss_pred ccCcEEEEEcCCCceeeccC-----------cccHHHHHHHHHHhhcc---------ccccccCCceEEccccchhhhhh
Confidence 99999999975522221111 00111111111111000 0000011100011111111100
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.....++|.|+++||++|+.+.|.+.++...++. ...+.+..+..+. ...++..+
T Consensus 160 ~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~--~~~v~~~~~d~~~-----------------------~~~~~~~~ 214 (383)
T KOG0191|consen 160 DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS--KENVELGKIDATV-----------------------HKSLASRL 214 (383)
T ss_pred ccCcceEEEEeccccHHhhhcChHHHHHHHHhcc--CcceEEEeeccch-----------------------HHHHhhhh
Confidence 1236799999999999999999999999998862 3566666665541 47888999
Q ss_pred cccccceEEEECCCCc
Q 016404 280 NIKGIPALVLIGPDGK 295 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~ 295 (390)
+|.++|++.++-++..
T Consensus 215 ~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 215 EVRGYPTLKLFPPGEE 230 (383)
T ss_pred cccCCceEEEecCCCc
Confidence 9999999999955555
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-16 Score=122.37 Aligned_cols=110 Identities=27% Similarity=0.461 Sum_probs=96.2
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC-hhHHHHHHHhCCCcc
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~~ 103 (390)
..+.+.+|+ +++++++||+++|+||++||++|+...+.|.++.+++++.+ +.++.|++|.+ .+.+++++++++ ..
T Consensus 2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~-~~ 78 (116)
T cd02966 2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYG-IT 78 (116)
T ss_pred ccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcC-CC
Confidence 347788999 99999999999999999999999999999999999997544 89999999987 888999999887 45
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+++..+....+.+.|++.++|+++++|++|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred cceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 55544556789999999999999999999988754
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-16 Score=131.40 Aligned_cols=113 Identities=19% Similarity=0.319 Sum_probs=98.5
Q ss_pred cceeecCCCc-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH 95 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~-~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 95 (390)
...+.+.+|+ ++++++ +||++||+||++||+.|...++.|.++++++++.+ +++++|++|. +.+.++++
T Consensus 6 ~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~~~~~~ 83 (171)
T cd02969 6 DFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPENMKAK 83 (171)
T ss_pred CccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHHHHHHH
Confidence 3558899999 999998 89999999999999999999999999999998765 9999999985 46788999
Q ss_pred HHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016404 96 FKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
+++++. .+|+..+....+++.|++..+|+++++|++|++++...
T Consensus 84 ~~~~~~-~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 84 AKEHGY-PFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred HHHCCC-CceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeec
Confidence 998774 36676666789999999999999999999999986543
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-16 Score=131.62 Aligned_cols=114 Identities=14% Similarity=0.241 Sum_probs=86.4
Q ss_pred CcceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHH
Q 016404 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH 95 (390)
Q Consensus 24 ~~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 95 (390)
..++|.+.+|+ +++++++||++||+||++||++|+.++|.|++++++|++.| ++|++|++|. +.+...++
T Consensus 10 pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~~~~~ 87 (167)
T PLN02412 10 YDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEEIQQT 87 (167)
T ss_pred CceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHHHHHH
Confidence 34668999999 99999999999999999999999999999999999999887 9999999863 33355555
Q ss_pred -HHhCCCcceecCh--hHH-HHHHHhcC-------------cCCCCeEEEEcCCCccccccc
Q 016404 96 -FKCMPWLAVPFDE--TLH-KKLRIRYR-------------VDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 96 -~~~~~~~~~~~~~--~~~-~~l~~~~~-------------v~~~P~~~~~d~~G~i~~~~~ 140 (390)
.++++ +.+|... +.+ ...+..|+ +.+.|+.+|+|++|+++.+..
T Consensus 88 ~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 88 VCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 45544 4455521 111 12222222 566899999999999987653
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-16 Score=135.21 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=87.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~ 96 (390)
.+.|.+.+|+ +++++++||++||+||++||++|..++|.|++++++++++| ++|++|++| .+.++.++|+
T Consensus 81 dF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~ei~~f~ 158 (236)
T PLN02399 81 DFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKQFA 158 (236)
T ss_pred ceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHHHHHHHH
Confidence 4558899999 99999999999999999999999999999999999999887 999999985 2445778887
Q ss_pred -HhCCCcceecC--hhHHH-HHHHhc-------C------cCCCCeEEEEcCCCccccccc
Q 016404 97 -KCMPWLAVPFD--ETLHK-KLRIRY-------R------VDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 97 -~~~~~~~~~~~--~~~~~-~l~~~~-------~------v~~~P~~~~~d~~G~i~~~~~ 140 (390)
++++ +.+|+. .+... ..+..| + +.+.|+.+|||++|+++.+..
T Consensus 159 ~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~ 218 (236)
T PLN02399 159 CTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYP 218 (236)
T ss_pred HHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEEC
Confidence 3444 344542 12111 222222 2 356799999999999997553
|
|
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-15 Score=131.22 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=96.1
Q ss_pred HhhccCCceEE-eCCCCeeeecc-cCCcEEE-EEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--HH
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSE-LAGKTIG-LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE 252 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~-~~gk~vl-v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~ 252 (390)
.+|..+|+|++ +..|+ +++++ ++||+++ ++||++||+.|..+++.|++++++|++ .+++|++||+|... .+
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~---~~v~VigvS~D~~~~h~a 85 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE---LNTELIGLSIDQVFSHIK 85 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHH
Confidence 46999999999 67774 77776 4998554 578999999999999999999999987 78999999999754 34
Q ss_pred HHHhhhc-CC-cccccCCchHHHHHHHHcccc-------ccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSI-MP-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~~ 300 (390)
|.+.+.. .+ -+.+|+..|....+++.||+. .+|++||||++|+|++..
T Consensus 86 w~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 86 WVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred HHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 5544332 22 256788888889999999975 579999999999998773
|
|
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=124.85 Aligned_cols=111 Identities=23% Similarity=0.268 Sum_probs=96.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.+.+.+|+ +++++++||+++|+|| +.||+.|..+++.|.++++++++.+ +++++|+.|. .+.+.+|.++++ .
T Consensus 5 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~~~~-~ 80 (140)
T cd03017 5 DFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDS-VESHAKFAEKYG-L 80 (140)
T ss_pred CccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHhC-C
Confidence 3568899999 9999999999999999 5899999999999999999998766 8999999984 567889998876 4
Q ss_pred ceecChhHHHHHHHhcCcCCC---------CeEEEEcCCCcccccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRI---------PSLIPLASDGTLIEED 139 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~---------P~~~~~d~~G~i~~~~ 139 (390)
.+|+..+....+++.||+... |+.+++|++|++++..
T Consensus 81 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~ 126 (140)
T cd03017 81 PFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVW 126 (140)
T ss_pred CceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEE
Confidence 566766666889999999988 9999999999998654
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-15 Score=128.43 Aligned_cols=106 Identities=19% Similarity=0.306 Sum_probs=86.5
Q ss_pred cceeecCCCc-cccC--ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQGK-VPLS--SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~--~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
.+++.+.+|+ ++++ ..+||+++|+||++||++|+.++|.+.+++++. + +++++|+. .+.++.++|+++++.
T Consensus 54 ~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~-~~~~~~~~~~~~~~~ 127 (189)
T TIGR02661 54 IFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISD-GTPAEHRRFLKDHEL 127 (189)
T ss_pred CcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeC-CCHHHHHHHHHhcCC
Confidence 4558999999 9995 568999999999999999999999999988653 2 56899984 466788999998764
Q ss_pred cceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
...++. ...++.+.|++..+|+.+++|++|+++++
T Consensus 128 ~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 128 GGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred Ccceee--chhHHHHhccCCccceEEEECCCCeEEEc
Confidence 322222 23678899999999999999999999864
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-15 Score=126.35 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=94.2
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~-C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ +++++++||+++|+||++| |++|..++|.|+++++++. + ++|++|+.|. ....++|.++++..
T Consensus 26 ~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~-~~~~~~f~~~~~~~ 100 (167)
T PRK00522 26 DFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADL-PFAQKRFCGAEGLE 100 (167)
T ss_pred CeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCC-HHHHHHHHHhCCCC
Confidence 3458899999 9999999999999999999 9999999999999999983 3 8899999984 45578899888754
Q ss_pred ceecChh-HHHHHHHhcCcCCCC---------eEEEEcCCCccccccc
Q 016404 103 AVPFDET-LHKKLRIRYRVDRIP---------SLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~-~~~~l~~~~~v~~~P---------~~~~~d~~G~i~~~~~ 140 (390)
.+++..| ....+++.||+...| +.+++|++|++++...
T Consensus 101 ~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 101 NVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred CceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 4666655 456999999998777 9999999999987665
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-14 Score=140.75 Aligned_cols=240 Identities=11% Similarity=0.172 Sum_probs=142.9
Q ss_pred cchhhhhhccCcceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHH
Q 016404 14 SDFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF 92 (390)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 92 (390)
.++..++.....+.+...+.. ...--..++.+++.|. .+.......+.+.+++++++++ +.++.+|.+..
T Consensus 220 ~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~-----~~f~~vd~~~~-- 290 (477)
T PTZ00102 220 EELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCG--TTEDYDKYKSVVRKVARKLREK-----YAFVWLDTEQF-- 290 (477)
T ss_pred HHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEec--CHHHHHHHHHHHHHHHHhccCc-----eEEEEEechhc--
Confidence 346667777777777777776 3222224555444332 4555667888999999999876 44555554432
Q ss_pred HHHHHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHH-HHhhcchhhhc
Q 016404 93 EEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRRE-ELKAIDDSKRQ 171 (390)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 171 (390)
...+.+.||+..+|++++.+.+|+....... . .. .....+. .+......
T Consensus 291 ------------------~~~~~~~~gi~~~P~~~i~~~~~~y~~~~~~-----~---~~-~~~~~l~~Fv~~~~~g--- 340 (477)
T PTZ00102 291 ------------------GSHAKEHLLIEEFPGLAYQSPAGRYLLPPAK-----E---SF-DSVEALIEFFKDVEAG--- 340 (477)
T ss_pred ------------------chhHHHhcCcccCceEEEEcCCcccCCCccc-----c---cc-CCHHHHHHHHHHHhCC---
Confidence 0136788999999998888755543211100 0 00 1111221 11111110
Q ss_pred ccchhHHhhccCCc---eEE-eCCCCeeeec-ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec
Q 016404 172 GGKLEQLLAIEGRD---YVL-SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246 (390)
Q Consensus 172 ~~~~~~l~g~~~p~---f~l-~~~g~~~~l~-~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~ 246 (390)
.....+...+.|. ..+ ...|+++... .-.|++|+|+|||+||++|+.+.|.+.++++.+++ ...+.++.+..
T Consensus 341 -k~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~v~~~~id~ 417 (477)
T PTZ00102 341 -KVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD--NDSIIVAKMNG 417 (477)
T ss_pred -CCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCcEEEEEEEC
Confidence 0001111111121 112 4555555543 23579999999999999999999999999998874 23466666655
Q ss_pred CCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHH
Q 016404 247 DRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETA 326 (390)
Q Consensus 247 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~ 326 (390)
+. +...++.|+++++|++++++++|++..+ +.|... .+.+.+.
T Consensus 418 ~~-----------------------~~~~~~~~~v~~~Pt~~~~~~~~~~~~~-------~~G~~~-------~~~l~~~ 460 (477)
T PTZ00102 418 TA-----------------------NETPLEEFSWSAFPTILFVKAGERTPIP-------YEGERT-------VEGFKEF 460 (477)
T ss_pred CC-----------------------CccchhcCCCcccCeEEEEECCCcceeE-------ecCcCC-------HHHHHHH
Confidence 53 2456788999999999999877765333 345444 6667777
Q ss_pred HHHhcC
Q 016404 327 LKKEGD 332 (390)
Q Consensus 327 ~~~~~~ 332 (390)
+++...
T Consensus 461 i~~~~~ 466 (477)
T PTZ00102 461 VNKHAT 466 (477)
T ss_pred HHHcCC
Confidence 776554
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-15 Score=128.08 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=87.0
Q ss_pred cceeecCCCc-ccc--Ccc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEFLLSRQGK-VPL--SSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l--~~~-~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.+++.+.+|+ .++ +++ +||+++|+||++||++|+.++|.++++++ .+ +++++|+.+.+.++..+|+++++
T Consensus 42 ~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~~~~~~~~~~~~~~~~~ 115 (173)
T TIGR00385 42 AFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVDYKDQSQNALKFLKELG 115 (173)
T ss_pred CccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEECCCChHHHHHHHHHcC
Confidence 4457888886 444 465 69999999999999999999999988765 23 88999999877777888998876
Q ss_pred Cccee-cChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 101 WLAVP-FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 101 ~~~~~-~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+ .++ +..+....+.+.|++.++|+.+++|++|+++++.
T Consensus 116 ~-~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 154 (173)
T TIGR00385 116 N-PYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH 154 (173)
T ss_pred C-CCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence 4 333 3345557899999999999999999999988654
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=126.36 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=86.2
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHHHHH
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHFK 97 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~~ 97 (390)
++|.+.+|+ +++++++||++||.||++||++|+..+|.|+++++++++++ ++|++|+++ .+.+..++|++
T Consensus 5 f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~~ 82 (153)
T TIGR02540 5 FEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFAR 82 (153)
T ss_pred ceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHHH
Confidence 568899999 99999999999999999999999999999999999999877 999999962 34567888987
Q ss_pred h-CCCcceecChh-----HHHHHHHhcC---cCCCCe----EEEEcCCCccccccc
Q 016404 98 C-MPWLAVPFDET-----LHKKLRIRYR---VDRIPS----LIPLASDGTLIEEDL 140 (390)
Q Consensus 98 ~-~~~~~~~~~~~-----~~~~l~~~~~---v~~~P~----~~~~d~~G~i~~~~~ 140 (390)
+ ++ +.+|...+ ........|. ...+|+ .+++|++|+++.+..
T Consensus 83 ~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 83 RNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 137 (153)
T ss_pred HhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEEC
Confidence 5 45 34555221 1111122232 235898 999999999986543
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-15 Score=120.44 Aligned_cols=103 Identities=18% Similarity=0.387 Sum_probs=88.1
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC-hhHHHHHHHhCCCcc
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~~ 103 (390)
+.+.+.+|+ ++++.++||+++|+||++||++|+.++|.|.+++++ +++++|+.|.+ .+.++++.++++ +.
T Consensus 3 f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~-~~ 74 (123)
T cd03011 3 FTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG-YG 74 (123)
T ss_pred ceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-CC
Confidence 458889999 999999999999999999999999999999999876 34888888754 678889999877 45
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
+|+..+....+++.|++.++|+++++|++| ++.
T Consensus 75 ~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~ 107 (123)
T cd03011 75 FPVINDPDGVISARWGVSVTPAIVIVDPGG-IVF 107 (123)
T ss_pred ccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEE
Confidence 666555667899999999999999999888 653
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-15 Score=121.54 Aligned_cols=114 Identities=24% Similarity=0.399 Sum_probs=93.2
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhhCC-CcEEEEEEecCCC---hhHHHHHHHh
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRG-TELEVIFISFDHD---ENGFEEHFKC 98 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~-C~~~~p~l~~~~~~~~~~~-~~~~vv~v~~d~~---~~~~~~~~~~ 98 (390)
.+.+.+.+|+ +++++++||+++|.||++||++ |...++.|+++++++++++ .++++++|++|.. .+.+++|+++
T Consensus 4 ~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~ 83 (142)
T cd02968 4 DFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKA 83 (142)
T ss_pred ceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999 9999999999999999999997 9999999999999998754 4599999999853 4678899998
Q ss_pred CC--CcceecChhHHHHHHHhcCcCC--------------CCeEEEEcCCCccccc
Q 016404 99 MP--WLAVPFDETLHKKLRIRYRVDR--------------IPSLIPLASDGTLIEE 138 (390)
Q Consensus 99 ~~--~~~~~~~~~~~~~l~~~~~v~~--------------~P~~~~~d~~G~i~~~ 138 (390)
++ |..+....+....+++.||+.. .|+++|+|++|+++..
T Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 84 FGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred hCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 75 4433333445578999999653 4579999999998753
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-15 Score=122.69 Aligned_cols=110 Identities=17% Similarity=0.111 Sum_probs=93.5
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~-C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
+.+.+.+|+ ++|++++||+++|+||++| |++|+.++|.|.+++++++ + +++++|+.|. ....++|.+++....
T Consensus 9 f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~-~~~~~~~~~~~~~~~ 83 (143)
T cd03014 9 FTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADL-PFAQKRWCGAEGVDN 83 (143)
T ss_pred cEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCC-HHHHHHHHHhcCCCC
Confidence 458899999 9999999999999999998 6999999999999999974 3 8899999985 456688888887556
Q ss_pred eecChhHH-HHHHHhcCcCC------CCeEEEEcCCCccccccc
Q 016404 104 VPFDETLH-KKLRIRYRVDR------IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 104 ~~~~~~~~-~~l~~~~~v~~------~P~~~~~d~~G~i~~~~~ 140 (390)
+++..+.. ..+++.||+.. .|+.+++|++|+|+....
T Consensus 84 ~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 84 VTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred ceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 77756554 88999999863 699999999999987665
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-15 Score=113.17 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=61.9
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.+|++|||+|||+||++|+.+.|.|++++++++ ++.++.|+.|.+. ....+++.|
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-----~v~~~~vd~d~~~--------------------~~~~l~~~~ 67 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-----DVVFLLVNGDEND--------------------STMELCRRE 67 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----CCEEEEEECCCCh--------------------HHHHHHHHc
Confidence 357999999999999999999999999999883 3667777776542 125789999
Q ss_pred cccccceEEEECCCCcEEee
Q 016404 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|.++||++++ ++|+++.+
T Consensus 68 ~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 68 KIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred CCCcCCEEEEE-eCCeEEEE
Confidence 99999998888 89998876
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-15 Score=120.44 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=96.6
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.+.+.+|+ +++++++||+++|+|| +.||++|...+|.|.+++++++..+ +++++|+.| +.+..++|.++++-.
T Consensus 4 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d-~~~~~~~~~~~~~~~ 80 (140)
T cd02971 4 DFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVD-SPFSHKAWAEKEGGL 80 (140)
T ss_pred CceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHHHHHhcccCC
Confidence 3568899999 9999999999999999 7899999999999999999997666 899999987 455688888887335
Q ss_pred ceecChhHHHHHHHhcCcCCCC---------eEEEEcCCCcccccccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRIP---------SLIPLASDGTLIEEDLI 141 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P---------~~~~~d~~G~i~~~~~~ 141 (390)
.+++..+....+.+.||+...| +.+++|++|++++....
T Consensus 81 ~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 81 NFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred CceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEec
Confidence 6666566667899999988766 89999999999976543
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-14 Score=120.36 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=67.9
Q ss_pred cCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------CCHHHH
Q 016404 182 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEF 253 (390)
Q Consensus 182 ~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~ 253 (390)
..++|++ +.+|+.+++++++||+|||.|||+||++|. .++.|++++++|++ .++.|++++++ .+.+++
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~---~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD---QGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh---CCeEEEEeeccccccCCCCCHHHH
Confidence 4678888 999999999999999999999999999996 69999999999986 78999999985 245677
Q ss_pred HHhhh-cCCcccccC
Q 016404 254 DLNHS-IMPWLAIPY 267 (390)
Q Consensus 254 ~~~~~-~~~~~~~~~ 267 (390)
.+++. .++ +.+|+
T Consensus 80 ~~f~~~~~g-~~Fpv 93 (183)
T PRK10606 80 KTYCRTTWG-VTFPM 93 (183)
T ss_pred HHHHHHccC-CCcee
Confidence 77775 444 34554
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-15 Score=117.89 Aligned_cols=86 Identities=24% Similarity=0.537 Sum_probs=70.8
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+.||+|+|||+||+||+.+.|.|+++..+|+ +.+++.-|++|.. .+++.+|+|
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~----g~~k~~kvdtD~~-----------------------~ela~~Y~I 113 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYA----GKFKLYKVDTDEH-----------------------PELAEDYEI 113 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhc----CeEEEEEEccccc-----------------------cchHhhcce
Confidence 4899999999999999999999999999996 6788888888863 789999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
.++||+++| ++|+.+.+ ..|+.+ -+.|.+.+++
T Consensus 114 ~avPtvlvf-knGe~~d~-------~vG~~~-------~~~l~~~i~k 146 (150)
T KOG0910|consen 114 SAVPTVLVF-KNGEKVDR-------FVGAVP-------KEQLRSLIKK 146 (150)
T ss_pred eeeeEEEEE-ECCEEeee-------ecccCC-------HHHHHHHHHH
Confidence 999999999 56665544 677766 4455555544
|
|
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-15 Score=122.80 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=93.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~-~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.+.+.+|+ +++++++||+++|+||++ ||+.|...++.|.++++++++.+ +++++|+.| +.+++++|+++++ +
T Consensus 12 ~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d-~~~~~~~~~~~~~-~ 87 (154)
T PRK09437 12 KFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTD-KPEKLSRFAEKEL-L 87 (154)
T ss_pred CcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-CHHHHHHHHHHhC-C
Confidence 4558899999 999999999999999976 67889999999999999999877 899999998 4577889999876 4
Q ss_pred ceecChhHHHHHHHhcCcCCC------------CeEEEEcCCCccccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRI------------PSLIPLASDGTLIEE 138 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~------------P~~~~~d~~G~i~~~ 138 (390)
.+|+..+....+.+.|++... |+.+++|++|+++..
T Consensus 88 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 88 NFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred CCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 566655556789999998654 678999999998864
|
|
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=112.44 Aligned_cols=71 Identities=18% Similarity=0.448 Sum_probs=62.4
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|||+|||+||+||+.+.|.|.+++++++ +.+.++.|++|. ..++++.|+|
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~----~~v~f~kVDvD~-----------------------~~~la~~~~V 66 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS----NFAVIYLVDIDE-----------------------VPDFNKMYEL 66 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcc----CceEEEEEECCC-----------------------CHHHHHHcCC
Confidence 5799999999999999999999999999987 346677777775 4789999999
Q ss_pred cccceEEEECCCCcEEeeC
Q 016404 282 KGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~ 300 (390)
.++||++++ ++|+++.+.
T Consensus 67 ~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 67 YDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred CCCCEEEEE-ECCEEEEEE
Confidence 999999999 788888774
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-15 Score=121.26 Aligned_cols=78 Identities=24% Similarity=0.503 Sum_probs=66.7
Q ss_pred CccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016404 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 38 ~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
...+||+++|+||++||++|+.+.|.|.++++++++. +.++.|++|.+.. ..++++
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------------~~~~~~ 71 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------------LPEIDR 71 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc---------------------HHHHHH
Confidence 3347999999999999999999999999999998754 7789998885542 467889
Q ss_pred cCcCCCCeEEEEcCCCcccccc
Q 016404 118 YRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 118 ~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
|+|.++|++++++++|+++.+.
T Consensus 72 ~~V~~iPt~v~~~~~G~~v~~~ 93 (142)
T cd02950 72 YRVDGIPHFVFLDREGNEEGQS 93 (142)
T ss_pred cCCCCCCEEEEECCCCCEEEEE
Confidence 9999999999999899887543
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.8e-15 Score=125.34 Aligned_cols=113 Identities=20% Similarity=0.281 Sum_probs=84.5
Q ss_pred cceeecCCCc-cccCccCCCEE-EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH 95 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~v-ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 95 (390)
.+++.+.+|+ +++++++||++ ++.|||+|||+|+.++|.|+++++++++++ ++|++|++|. +.+...+|
T Consensus 22 ~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~~~~~f 99 (183)
T PTZ00256 22 EFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEPEIKEY 99 (183)
T ss_pred ceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHHHHHHH
Confidence 4568899999 99999999965 566799999999999999999999999877 9999999752 34567788
Q ss_pred HH-hCCCcceecCh----h--HHHHHH------------HhcCcCCCCe---EEEEcCCCccccccc
Q 016404 96 FK-CMPWLAVPFDE----T--LHKKLR------------IRYRVDRIPS---LIPLASDGTLIEEDL 140 (390)
Q Consensus 96 ~~-~~~~~~~~~~~----~--~~~~l~------------~~~~v~~~P~---~~~~d~~G~i~~~~~ 140 (390)
+. +++ +.+|... + ....+. ..+++.++|+ .+|+|++|+++.+..
T Consensus 100 ~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 100 VQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred HHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 75 444 3444421 1 111222 1235778995 699999999997654
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=120.15 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=93.1
Q ss_pred cceeecCCCc-cccCccCC-CEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQGK-VPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~g-k~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
...+.+.+|+ +++++++| |+++|.|| ++||+.|...+|.|+++++++++.+ +++++|+.|. .+..++|.++++
T Consensus 9 ~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~-~~~~~~~~~~~~- 84 (149)
T cd03018 9 DFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDS-PFSLRAWAEENG- 84 (149)
T ss_pred CcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCC-HHHHHHHHHhcC-
Confidence 3457888999 99999999 99888888 9999999999999999999998766 8899999884 456888888776
Q ss_pred cceecChhHH--HHHHHhcCcCC----C--CeEEEEcCCCccccccc
Q 016404 102 LAVPFDETLH--KKLRIRYRVDR----I--PSLIPLASDGTLIEEDL 140 (390)
Q Consensus 102 ~~~~~~~~~~--~~l~~~~~v~~----~--P~~~~~d~~G~i~~~~~ 140 (390)
+.+|+..+.. ..+++.|++.. + |+.+++|++|++++...
T Consensus 85 ~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~ 131 (149)
T cd03018 85 LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWV 131 (149)
T ss_pred CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEe
Confidence 4566655544 78999999873 3 48999999999987654
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=122.99 Aligned_cols=111 Identities=19% Similarity=0.209 Sum_probs=89.3
Q ss_pred eeecCCC----c-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC-
Q 016404 27 FLLSRQG----K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM- 99 (390)
Q Consensus 27 ~l~~~~g----~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~- 99 (390)
.+.+.+| + ++|++++||+++|+|| ++||++|...++.|++++++|.+.+ +.+++|++|... ..+.+.+.+
T Consensus 9 ~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~-~~~~~~~~~~ 85 (173)
T cd03015 9 KATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHF-SHLAWRNTPR 85 (173)
T ss_pred EeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHH-HHHHHHHhhh
Confidence 4666665 7 9999999999999999 8999999999999999999998877 899999998543 233343332
Q ss_pred -----CCcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccccc
Q 016404 100 -----PWLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 100 -----~~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~~ 140 (390)
.-+.+++..+....+++.|++. ..|+.+|+|++|++++...
T Consensus 86 ~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~ 137 (173)
T cd03015 86 KEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITV 137 (173)
T ss_pred hhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEe
Confidence 1245666666778999999986 5789999999999997764
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=117.23 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=61.8
Q ss_pred CCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchH
Q 016404 192 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA 271 (390)
Q Consensus 192 g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 271 (390)
|+.+++++ +.+|+|||+||++|++++|.|++++++|+ +.|++|++|.... . .+|...+.
T Consensus 44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~~------~~Vi~Vs~d~~~~------~-----~fp~~~~~ 102 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQFG------LPVYAFSLDGQGL------T-----GFPDPLPA 102 (153)
T ss_pred chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHcC------CcEEEEEeCCCcc------c-----ccccccCC
Confidence 55555544 46999999999999999999999998873 5799999886431 1 22222211
Q ss_pred H-HHHHHHc---cccccceEEEECCCCcEEe
Q 016404 272 R-QDLCRIF---NIKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 272 ~-~~l~~~~---~v~~~P~~~lid~~G~v~~ 298 (390)
. ..+...| ++.++|+++|||++|+++.
T Consensus 103 ~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 103 TPEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred chHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 1 2233455 8899999999999988654
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=111.43 Aligned_cols=73 Identities=15% Similarity=0.326 Sum_probs=61.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+|||+||+||+.+.|.|.++++++++. +.++-|++| +. ..++++|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD--~~---------------------~~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDID--EV---------------------PDFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECC--CC---------------------HHHHHHcCC
Confidence 5789999999999999999999999999998764 455555555 32 689999999
Q ss_pred CCCCeEEEEcCCCccccccc
Q 016404 121 DRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~~ 140 (390)
.++||++++. +|+.+.+..
T Consensus 67 ~~iPTf~~fk-~G~~v~~~~ 85 (114)
T cd02954 67 YDPPTVMFFF-RNKHMKIDL 85 (114)
T ss_pred CCCCEEEEEE-CCEEEEEEc
Confidence 9999999996 898886553
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=111.00 Aligned_cols=68 Identities=16% Similarity=0.354 Sum_probs=56.1
Q ss_pred ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 199 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 199 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
+++||+|+|+|||+||++|+.+.|.|.++++.+++ +.++.|..+.. ...++++
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-----~~~~~vd~~~~----------------------~~~l~~~ 67 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-----IRHLAIEESSI----------------------KPSLLSR 67 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-----CceEEEECCCC----------------------CHHHHHh
Confidence 46789999999999999999999999999999852 55666544311 3678999
Q ss_pred ccccccceEEEECCC
Q 016404 279 FNIKGIPALVLIGPD 293 (390)
Q Consensus 279 ~~v~~~P~~~lid~~ 293 (390)
|+|.++||+++++++
T Consensus 68 ~~V~~~PT~~lf~~g 82 (100)
T cd02999 68 YGVVGFPTILLFNST 82 (100)
T ss_pred cCCeecCEEEEEcCC
Confidence 999999999999644
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=111.26 Aligned_cols=74 Identities=20% Similarity=0.376 Sum_probs=61.0
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 39 ~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
+.+||+|+|+|||+||++|+.++|.|+++++++. + +.++.|++|.+.. ...++++|
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~--v~~~~vd~d~~~~--------------------~~~l~~~~ 67 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--D--VVFLLVNGDENDS--------------------TMELCRRE 67 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--C--CEEEEEECCCChH--------------------HHHHHHHc
Confidence 3469999999999999999999999999999982 2 6677777665432 25789999
Q ss_pred CcCCCCeEEEEcCCCcccc
Q 016404 119 RVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~~ 137 (390)
+|.++||++++ ++|+++.
T Consensus 68 ~V~~~Pt~~~~-~~G~~v~ 85 (103)
T cd02985 68 KIIEVPHFLFY-KDGEKIH 85 (103)
T ss_pred CCCcCCEEEEE-eCCeEEE
Confidence 99999999998 5898764
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-14 Score=110.50 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=62.9
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.+|++++|+|||+||++|+.+.|.+.++.+++++ .++.++.|++|. ...++++|
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~d~-----------------------~~~l~~~~ 75 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP---LGVGIATVNAGH-----------------------ERRLARKL 75 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh---cCceEEEEeccc-----------------------cHHHHHHc
Confidence 3579999999999999999999999999999974 457777777764 36788999
Q ss_pred cccccceEEEECCCCcEEee
Q 016404 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|.++|+++++ ++|+++.+
T Consensus 76 ~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 76 GAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred CCccCCEEEEE-ECCEEEEE
Confidence 99999999999 58887766
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-14 Score=108.72 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=61.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+|||+||+||+.+.|.+.++.+++. .++.++.|.+|.+.. + ...++++|+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~----~~~~~~~vdvd~~~~------------------d-~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGD----IKKPILTLNLDAEDV------------------D-REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc----CCceEEEEECCcccc------------------c-cHHHHHHCC
Confidence 46899999999999999999999999988754 345788888886420 0 256899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+.+.+
T Consensus 70 I~~iPT~i~f-k~G~~v~~ 87 (103)
T PHA02278 70 IMSTPVLIGY-KDGQLVKK 87 (103)
T ss_pred CccccEEEEE-ECCEEEEE
Confidence 9999999999 67888776
|
|
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-14 Score=120.06 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=76.7
Q ss_pred CcceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 24 ~~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+..+...+|+ +++++++ +|+||++|||+|++++|.|++++++++ ++|++|++|.+.+ .
T Consensus 54 ~~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~-----------~ 113 (181)
T PRK13728 54 APRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGD-----------T 113 (181)
T ss_pred CCCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCC-----------C
Confidence 44556667999 9999997 777999999999999999999999973 7899999986643 4
Q ss_pred ceecCh-hHHHHHHHhcCc--CCCCeEEEEcCCCccccc
Q 016404 103 AVPFDE-TLHKKLRIRYRV--DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 103 ~~~~~~-~~~~~l~~~~~v--~~~P~~~~~d~~G~i~~~ 138 (390)
.+|... +....+.+.|++ .++|+.+++|++|+++..
T Consensus 114 ~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 114 AFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred CCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 555533 234567888995 699999999999998643
|
|
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-14 Score=117.88 Aligned_cols=111 Identities=22% Similarity=0.311 Sum_probs=90.2
Q ss_pred cceeecCCCc-cccCccC-CC-EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQGK-VPLSSCG-GK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~-gk-~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
..+|.+.+|+ ++++++. ++ ++|++||++||++|+.++|.|.++++++++.+ +++++|+.|... ...+|.+.+.
T Consensus 4 ~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~-~~~~~~~~~~- 79 (149)
T cd02970 4 DFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPE-KLEAFDKGKF- 79 (149)
T ss_pred CccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHH-HHHHHHHhcC-
Confidence 3458889999 9999874 45 55555569999999999999999999998777 999999988544 4456777665
Q ss_pred cceecChhHHHHHHHhcCcC-----------------------------CCCeEEEEcCCCcccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVD-----------------------------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~~~d~~G~i~~~~ 139 (390)
+.+|+..|....+.+.||+. ..|..+|+|++|++++..
T Consensus 80 ~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 80 LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 56788777778999999984 799999999999988654
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-14 Score=107.86 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=60.3
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+|||+||++|+.+.|.|.+++++++. ..+.++.++.| . ..++++|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~---~~~~~~~vd~d-~-----------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD---DLLHFATAEAD-T-----------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC---CcEEEEEEeCC-C-----------------------HHHHHHcC
Confidence 368999999999999999999999999999863 45677777777 2 45789999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|+++|+++++ ++|+++.+
T Consensus 69 v~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 69 GKCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CCcCcEEEEE-ECCEEEEE
Confidence 9999998888 68888776
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=122.85 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=87.2
Q ss_pred eec-CCCc---cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHh---C
Q 016404 28 LLS-RQGK---VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC---M 99 (390)
Q Consensus 28 l~~-~~g~---~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~---~ 99 (390)
+.+ .+|+ +++++++||+++|+|| ++||++|..+++.|.++++++++.+ ++|++|+.|... ..++|.+. .
T Consensus 13 l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~-~~~~~~~~~~~~ 89 (187)
T TIGR03137 13 ATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF-VHKAWHDTSEAI 89 (187)
T ss_pred eeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH-HHHHHHhhhhhc
Confidence 565 4564 7788999999999999 9999999999999999999998777 889999998642 33344332 2
Q ss_pred CCcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccccc
Q 016404 100 PWLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~~ 140 (390)
.-+.+|+..+....+++.||+. ..|+.+++|++|++++...
T Consensus 90 ~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~ 136 (187)
T TIGR03137 90 GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEI 136 (187)
T ss_pred cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEE
Confidence 2245666666678999999986 4699999999999986553
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-14 Score=113.93 Aligned_cols=109 Identities=22% Similarity=0.250 Sum_probs=97.1
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.++|.+.+|+ ++|++++||+|+|+|| ..++|.|..++-.+++.+.+|++.| .+|++||.| +..+.++|.+++. +
T Consensus 12 dF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~D-s~~~~~~F~~k~~-L 87 (157)
T COG1225 12 DFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPD-SPKSHKKFAEKHG-L 87 (157)
T ss_pred CeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCC-CHHHHHHHHHHhC-C
Confidence 3459999999 9999999999999999 7789999999999999999999987 899999999 5667899999988 5
Q ss_pred ceecChhHHHHHHHhcCcC------------CCCeEEEEcCCCcccc
Q 016404 103 AVPFDETLHKKLRIRYRVD------------RIPSLIPLASDGTLIE 137 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~------------~~P~~~~~d~~G~i~~ 137 (390)
.+++..|...+++++||+. ..++.++||++|+|.+
T Consensus 88 ~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~ 134 (157)
T COG1225 88 TFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY 134 (157)
T ss_pred CceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence 6888888889999999984 3579999999999875
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=105.86 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=60.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.++++.+. ..+.++.|++|. ...++++|+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~-----------------------~~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ----GQFVLAKVNCDA-----------------------QPQIAQQFG 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC----CcEEEEEEeccC-----------------------CHHHHHHcC
Confidence 46899999999999999999999999999986 346667776664 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|++++++ +|+++.+
T Consensus 64 i~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 64 VQALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCCEEEEEe-CCEEeee
Confidence 99999999995 8887755
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-14 Score=119.97 Aligned_cols=100 Identities=12% Similarity=-0.030 Sum_probs=76.9
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEE------EEEecCCChhHHHHH----HHhCCCcce
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEV------IFISFDHDENGFEEH----FKCMPWLAV 104 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~v------v~v~~d~~~~~~~~~----~~~~~~~~~ 104 (390)
++.++++||+++|+|||+||++|+.++|.|.++.+ ++ +.+ ++|+.|++......| +++.. ..+
T Consensus 52 ~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~-~~~ 124 (184)
T TIGR01626 52 WGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----AK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGK-KEN 124 (184)
T ss_pred ccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----cC--CCcccccceEEEECccchhhHHHHHHHHHHHhc-ccC
Confidence 77888999999999999999999999999999833 34 677 999998765443344 44332 222
Q ss_pred e---cChhHHHHHHHhcCcCCCCeE-EEEcCCCcccccccc
Q 016404 105 P---FDETLHKKLRIRYRVDRIPSL-IPLASDGTLIEEDLI 141 (390)
Q Consensus 105 ~---~~~~~~~~l~~~~~v~~~P~~-~~~d~~G~i~~~~~~ 141 (390)
| +..|....+...|++.++|+. +++|++|+++.+...
T Consensus 125 P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G 165 (184)
T TIGR01626 125 PWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG 165 (184)
T ss_pred CcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC
Confidence 2 444446788899999999888 899999999866543
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-14 Score=120.23 Aligned_cols=110 Identities=14% Similarity=0.186 Sum_probs=89.7
Q ss_pred eecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC---CCc
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM---PWL 102 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~---~~~ 102 (390)
+.+.+.. ++|++++||+++|+|| +.||+.|..+++.|.++++++.+.+ ++|++||.|.. ...++|.+.. .-+
T Consensus 16 ~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~-~~~~a~~~~~~~~~~l 92 (187)
T PRK10382 16 FKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTH-FTHKAWHSSSETIAKI 92 (187)
T ss_pred EeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCH-HHHHHHHHhhccccCC
Confidence 3343444 8899999999999999 9999999999999999999999877 89999998853 4455565532 235
Q ss_pred ceecChhHHHHHHHhcCc----CCC--CeEEEEcCCCccccccc
Q 016404 103 AVPFDETLHKKLRIRYRV----DRI--PSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v----~~~--P~~~~~d~~G~i~~~~~ 140 (390)
.+|+..|....+++.||+ .++ |+.+++|++|+|++...
T Consensus 93 ~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~ 136 (187)
T PRK10382 93 KYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 136 (187)
T ss_pred ceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEE
Confidence 677777788999999998 356 99999999999987644
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-14 Score=149.89 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCCc-ccc-CccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEec---CC--ChhHHHHHHHhCCCcc
Q 016404 31 RQGK-VPL-SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF---DH--DENGFEEHFKCMPWLA 103 (390)
Q Consensus 31 ~~g~-~~l-~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~---d~--~~~~~~~~~~~~~~~~ 103 (390)
.+|+ +++ ++++||+|||+|||+||++|+.++|.|++++++|++++ +.|+.|++ |. +.+.+++++.+++ +.
T Consensus 407 ~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~~~~~~~~~~~~~~-i~ 483 (1057)
T PLN02919 407 LNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEKDLEAIRNAVLRYN-IS 483 (1057)
T ss_pred cCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccccHHHHHHHHHHhC-CC
Confidence 5788 887 58999999999999999999999999999999998766 99999974 33 4567888888776 34
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+|...+....+.++|++.++|+++++|++|+++.+.
T Consensus 484 ~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~ 519 (1057)
T PLN02919 484 HPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQL 519 (1057)
T ss_pred ccEEECCchHHHHhcCCCccceEEEECCCCeEEEEE
Confidence 555455567899999999999999999999998653
|
|
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.3e-14 Score=107.20 Aligned_cols=76 Identities=14% Similarity=0.345 Sum_probs=61.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|+|||+||+||+.+.|.+.++++++... ..++.|++|.+.. + ...++++|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc------------------c-cHHHHHHCCC
Confidence 6899999999999999999999999998875433 5688888885431 0 1478999999
Q ss_pred CCCCeEEEEcCCCcccccc
Q 016404 121 DRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~ 139 (390)
.++||++++. +|+.+.+-
T Consensus 71 ~~iPT~i~fk-~G~~v~~~ 88 (103)
T PHA02278 71 MSTPVLIGYK-DGQLVKKY 88 (103)
T ss_pred ccccEEEEEE-CCEEEEEE
Confidence 9999999996 88877543
|
|
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-14 Score=119.88 Aligned_cols=123 Identities=18% Similarity=0.317 Sum_probs=89.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+|.|+|+|+|.||+||+...|.+..+..+|++ .|++.+|.++ .+..+..+|
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-------aVFlkVdVd~---------------------c~~taa~~g 71 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-------AVFLKVDVDE---------------------CRGTAATNG 71 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhCcc-------cEEEEEeHHH---------------------hhchhhhcC
Confidence 358999999999999999999999999999985 6777777654 678899999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCCCCC------------------------
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPR------------------------ 336 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p~------------------------ 336 (390)
|.++||++++ ++|..+..+.|+. ...|++.+.+.++..+.
T Consensus 72 V~amPTFiff--------~ng~kid~~qGAd--------~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~~~gle 135 (288)
T KOG0908|consen 72 VNAMPTFIFF--------RNGVKIDQIQGAD--------ASGLEEKVAKYASTSAASSGTGDIVKGQMDLKPFIDKVGLE 135 (288)
T ss_pred cccCceEEEE--------ecCeEeeeecCCC--------HHHHHHHHHHHhccCcccccCCCcccceehhhhhhhhhcce
Confidence 9999999999 5555555577866 44555555553332211
Q ss_pred -ccccCCCccceeecCCC-ceeecccCCCCceE
Q 016404 337 -EVKDVKHEHELKLDMAK-AYVCDCCKMRGRFW 367 (390)
Q Consensus 337 -~~~~~~~~~~l~l~~~~-~~iC~~C~e~g~~~ 367 (390)
......|.....+.... .++-++|+||+...
T Consensus 136 clNqsddH~l~nalkk~~ss~lesD~DeQl~is 168 (288)
T KOG0908|consen 136 CLNQSDDHFLKNALKKNFSSNLESDCDEQLIIS 168 (288)
T ss_pred eeccccccchHHHHhhccccceecccccceEEE
Confidence 12333454444444333 78899999998654
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-14 Score=108.00 Aligned_cols=69 Identities=19% Similarity=0.379 Sum_probs=56.6
Q ss_pred CccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016404 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 38 ~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
++.+||+++|.|||+||++|+.++|.|.++++++++ +.++.| |.+.+ ...++++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~v--d~~~~--------------------~~~l~~~ 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAI--EESSI--------------------KPSLLSR 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEE--ECCCC--------------------CHHHHHh
Confidence 356899999999999999999999999999999864 445555 43311 2588999
Q ss_pred cCcCCCCeEEEEcCCC
Q 016404 118 YRVDRIPSLIPLASDG 133 (390)
Q Consensus 118 ~~v~~~P~~~~~d~~G 133 (390)
|++.++||+++++ +|
T Consensus 68 ~~V~~~PT~~lf~-~g 82 (100)
T cd02999 68 YGVVGFPTILLFN-ST 82 (100)
T ss_pred cCCeecCEEEEEc-CC
Confidence 9999999999997 55
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=121.67 Aligned_cols=77 Identities=25% Similarity=0.494 Sum_probs=67.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+.+||||+||++||++|+.+.|.|.++..+|+ +.+.++.|++|.+ ..++..||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~----G~f~LakvN~D~~-----------------------p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK----GKFKLAKVNCDAE-----------------------PMVAAQFG 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhC----CceEEEEecCCcc-----------------------hhHHHHhC
Confidence 44799999999999999999999999999998 6788888888864 78999999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccC
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA 312 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~ 312 (390)
|+++|++|+| .+|+.+....|..+
T Consensus 95 iqsIPtV~af--------~dGqpVdgF~G~qP 118 (304)
T COG3118 95 VQSIPTVYAF--------KDGQPVDGFQGAQP 118 (304)
T ss_pred cCcCCeEEEe--------eCCcCccccCCCCc
Confidence 9999999999 66777766888776
|
|
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-13 Score=120.08 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=88.6
Q ss_pred eeecCCCccccCccCCCEEEE-EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh--HH-HHHHHhCCC-
Q 016404 27 FLLSRQGKVPLSSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GF-EEHFKCMPW- 101 (390)
Q Consensus 27 ~l~~~~g~~~l~~~~gk~vll-~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~-~~~~~~~~~- 101 (390)
.+.+..|.+++++++||+++| +||++||++|..+++.|.++++++++.+ ++|++|++|.... +| +.+.++.+.
T Consensus 12 ~~~~~~g~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~~~~~~~~g~~ 89 (202)
T PRK13190 12 TVNTTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWLRDIEERFGIK 89 (202)
T ss_pred EEecCCCcEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCC
Confidence 355666669999999997766 6889999999999999999999999877 8999999996432 33 233334442
Q ss_pred cceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
+.+|+..|....+++.||+. .+|+.++||++|+|++..
T Consensus 90 ~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 90 IPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred ceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 56788777779999999984 589999999999988544
|
|
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=105.85 Aligned_cols=81 Identities=14% Similarity=0.247 Sum_probs=63.8
Q ss_pred ecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecC
Q 016404 29 LSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFD 107 (390)
Q Consensus 29 ~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 107 (390)
+.+++. +.....++++++|.||++||++|+.+.|.+.++++++++. +.+..|++| .+
T Consensus 4 ~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~--~~----------------- 61 (101)
T cd03003 4 VTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCG--DD----------------- 61 (101)
T ss_pred EEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCC--cc-----------------
Confidence 344455 5444456799999999999999999999999999999754 555555555 32
Q ss_pred hhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 108 ETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 108 ~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
..++++|+++++||++++ ++|+.+
T Consensus 62 ----~~~~~~~~v~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 62 ----RMLCRSQGVNSYPSLYVF-PSGMNP 85 (101)
T ss_pred ----HHHHHHcCCCccCEEEEE-cCCCCc
Confidence 578999999999999999 578654
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-13 Score=120.44 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=94.6
Q ss_pred hhccCcce-eecCCCc-cccCccCCCEE-EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC--hhHHHH
Q 016404 20 LASEGVEF-LLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD--ENGFEE 94 (390)
Q Consensus 20 ~~~~~~~~-l~~~~g~-~~l~~~~gk~v-ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~--~~~~~~ 94 (390)
++...+++ +.+.+|+ +.+++++||++ |++||++|||+|..+++.|.+++++|++.+ ++|++||+|.. ...|.+
T Consensus 4 ~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 4 LGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHH
Confidence 33344444 7788999 77789999975 678889999999999999999999999887 89999999964 335667
Q ss_pred HHHhCC--CcceecChhHHHHHHHhcCcC-------CCCeEEEEcCCCcccccc
Q 016404 95 HFKCMP--WLAVPFDETLHKKLRIRYRVD-------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 95 ~~~~~~--~~~~~~~~~~~~~l~~~~~v~-------~~P~~~~~d~~G~i~~~~ 139 (390)
+++++. -+.+|+..|....+++.||+. ..|+.+++|++|+++...
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~ 135 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIM 135 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 776531 256777667778999999983 689999999999998653
|
|
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=112.18 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=93.8
Q ss_pred hhccCCceEE-eCC---CCeeeecc-cCCcEEEEEE-ccCCCcccHhh-HHHHHHHHHHhhcccCCce-EEEEEecCCCH
Q 016404 179 LAIEGRDYVL-SRD---HRKITVSE-LAGKTIGLYF-GAHWCPPCRSF-TSQLIEVYNELKTTANHCF-EVVLVSTDRDH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~---g~~~~l~~-~~gk~vlv~F-~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~-~vv~v~~d~~~ 250 (390)
+|+.+|+|++ +.+ |+.+++++ ++||++||+| .+.||+.|..+ ++.|++.+++|.+ .+. .|++|+.|...
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~---~g~~~V~~iS~D~~~ 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA---KGVDEVICVSVNDPF 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH---CCCCEEEEEECCCHH
Confidence 4788999999 664 99999999 5887555555 58999999999 9999999999986 777 69999998643
Q ss_pred HHHHHhhhcCCc-ccccCCchHHHHHHHHcccc-----------ccceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHSIMPW-LAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~ 300 (390)
...++...+.. ..+|+..|.+..+++.||+. ..+.+++|| +|+|++..
T Consensus 78 -~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~ 137 (155)
T cd03013 78 -VMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF 137 (155)
T ss_pred -HHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence 45555555554 47888888899999999983 146789999 79999873
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=104.12 Aligned_cols=74 Identities=23% Similarity=0.567 Sum_probs=61.7
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+|.++|+|+|+||+||+.+.|.+.+|+.+|++ +.++.|++|. ..++++.|+|
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-----v~Flkvdvde-----------------------~~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-----VVFLKVDVDE-----------------------LEEVAKEFNV 72 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-----CEEEEEeccc-----------------------CHhHHHhcCc
Confidence 59999999999999999999999999999973 5666666664 3789999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCcc
Q 016404 282 KGIPALVLIGPDGKTISTNGKEMISLYGAK 311 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~ 311 (390)
.++||++++ ++|+.+.+ ..|+.
T Consensus 73 ~~~PTf~f~-k~g~~~~~-------~vGa~ 94 (106)
T KOG0907|consen 73 KAMPTFVFY-KGGEEVDE-------VVGAN 94 (106)
T ss_pred eEeeEEEEE-ECCEEEEE-------EecCC
Confidence 999999999 55555544 67765
|
|
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-13 Score=104.06 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=61.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.||+++|+||++||++|+.+.+.+ .++.+.+. +++.++.|..+.+. .....+++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~-------------------~~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK----KDVVLLRADWTKND-------------------PEITALLK 66 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh----CCeEEEEEecCCCC-------------------HHHHHHHH
Confidence 468999999999999999999887 57777775 36777777765432 11367889
Q ss_pred HccccccceEEEECC-CCcEEee
Q 016404 278 IFNIKGIPALVLIGP-DGKTIST 299 (390)
Q Consensus 278 ~~~v~~~P~~~lid~-~G~v~~~ 299 (390)
+|++.++|+++++++ +|+++.+
T Consensus 67 ~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 67 RFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred HcCCCCCCEEEEECCCCCCCCcc
Confidence 999999999999998 8887766
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.8e-13 Score=107.16 Aligned_cols=85 Identities=25% Similarity=0.491 Sum_probs=64.3
Q ss_pred CC-cEEEEEEccCCCcccHhhHHHHH---HHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 201 AG-KTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 201 ~g-k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
.| |+|+|+||++||++|+.+.|.+. ++.+.+. .++.++.|++|.+.... . ++........++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR----AHFVVVYINIDGDKEVT-D---------FDGEALSEKELA 77 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH----hheEEEEEEccCCceee-c---------cCCCCccHHHHH
Confidence 46 89999999999999999999885 5656664 46778888877643211 0 111112357899
Q ss_pred HHccccccceEEEECCC-CcEEee
Q 016404 277 RIFNIKGIPALVLIGPD-GKTIST 299 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~-G~v~~~ 299 (390)
++|+|.++|+++++|++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999999 899877
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-13 Score=110.08 Aligned_cols=69 Identities=22% Similarity=0.558 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.++||+|+|||+||+||+.+.|.|+++..+|.+. +.+.-|++|.. .+++.+|+|
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~-----------------------~ela~~Y~I 113 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH-----------------------PELAEDYEI 113 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc-----------------------cchHhhcce
Confidence 4789999999999999999999999999999765 56666655532 689999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
+++||+++|+ +|+.+
T Consensus 114 ~avPtvlvfk-nGe~~ 128 (150)
T KOG0910|consen 114 SAVPTVLVFK-NGEKV 128 (150)
T ss_pred eeeeEEEEEE-CCEEe
Confidence 9999999996 88776
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-13 Score=103.07 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=57.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+|++++|+||++||++|+.+.|.++++++.+.+. +.++. +|.+.. ..++++|++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~--vd~~~~---------------------~~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAK--VNCDAQ---------------------PQIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEE--EeccCC---------------------HHHHHHcCC
Confidence 5889999999999999999999999999998653 44444 444443 689999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++|++++++ +|+.+
T Consensus 65 ~~~Pt~~~~~-~g~~~ 79 (96)
T cd02956 65 QALPTVYLFA-AGQPV 79 (96)
T ss_pred CCCCEEEEEe-CCEEe
Confidence 9999999997 88765
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-13 Score=105.48 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=56.2
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH-Hhc
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR-IRY 118 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 118 (390)
.++++++|.|||+||++|+.+.|.+.++++++++. +.++.| |++.+ ..++ ++|
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~V--d~d~~---------------------~~l~~~~~ 80 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAI--NCWWP---------------------QGKCRKQK 80 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEE--ECCCC---------------------hHHHHHhc
Confidence 46799999999999999999999999999999754 444555 54443 4677 589
Q ss_pred CcCCCCeEEEEcCCCcc
Q 016404 119 RVDRIPSLIPLASDGTL 135 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i 135 (390)
+|.++||+.++. +|+.
T Consensus 81 ~I~~~PTl~lf~-~g~~ 96 (113)
T cd03006 81 HFFYFPVIHLYY-RSRG 96 (113)
T ss_pred CCcccCEEEEEE-CCcc
Confidence 999999999995 7764
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=102.65 Aligned_cols=70 Identities=29% Similarity=0.573 Sum_probs=61.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.|+++++++. .++.++.+++|.. ..++++|++
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v 73 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYGI 73 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhC----CCcEEEEEECCCC-----------------------hhHHHhCCC
Confidence 5899999999999999999999999999987 4578888887753 567889999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ ++|+++.+
T Consensus 74 ~~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 74 RGIPTLLLF-KNGEVAAT 90 (109)
T ss_pred CcCCEEEEE-eCCeEEEE
Confidence 999999999 78998876
|
|
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-13 Score=102.94 Aligned_cols=72 Identities=19% Similarity=0.366 Sum_probs=60.7
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
..+++++|+||++||++|+.+.|.+.+++++++ ..+.+..|++|. ...++++|
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~----~~~~~~~vd~~~-----------------------~~~~~~~~ 68 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD----GVIRIGAVNCGD-----------------------DRMLCRSQ 68 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc----CceEEEEEeCCc-----------------------cHHHHHHc
Confidence 346899999999999999999999999999987 457777777775 36789999
Q ss_pred cccccceEEEECCCCcEEee
Q 016404 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|.++||++++ ++|+.+.+
T Consensus 69 ~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 69 GVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred CCCccCEEEEE-cCCCCccc
Confidence 99999999999 67765443
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.9e-13 Score=102.98 Aligned_cols=71 Identities=20% Similarity=0.335 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.|++++|+|||+||++|+.+.|.|.++++++++.. +.++.++.| . ..++++|++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d--~----------------------~~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD--T----------------------IDTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC--C----------------------HHHHHHcCC
Confidence 58999999999999999999999999999987543 556666655 2 467899999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
+++|+++++. +|+.+.+
T Consensus 70 ~~~Pt~~~~~-~g~~~~~ 86 (102)
T cd02948 70 KCEPTFLFYK-NGELVAV 86 (102)
T ss_pred CcCcEEEEEE-CCEEEEE
Confidence 9999999995 8877644
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-13 Score=106.36 Aligned_cols=96 Identities=21% Similarity=0.448 Sum_probs=67.3
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.++|+|+|+|||+||++|+.+.|.+.+..+... .+..++.|.+|.+. ....+.|
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~----~~~~fv~v~vd~~~----------------------~~~~~~~ 70 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISE----LSHNFVMVNLEDDE----------------------EPKDEEF 70 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh----hcCcEEEEEecCCC----------------------Cchhhhc
Confidence 356999999999999999999999998766543 22346667766542 2234577
Q ss_pred cccc--cceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHH
Q 016404 280 NIKG--IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIET 325 (390)
Q Consensus 280 ~v~~--~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~ 325 (390)
++.+ +|+++++|++|+++.+ +...+|...+......++++..
T Consensus 71 ~~~g~~vPt~~f~~~~Gk~~~~----~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 71 SPDGGYIPRILFLDPSGDVHPE----IINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred ccCCCccceEEEECCCCCCchh----hccCCCCccccccCCCHHHHHh
Confidence 7765 9999999999999875 2224555555444455555543
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-13 Score=103.34 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=56.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH-HHc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC-RIF 279 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 279 (390)
.+++++|.|||+||++|+.+.|.+.+++++++ +.+.++.|++|.+ ..++ ++|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~----~~v~~~~Vd~d~~-----------------------~~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS----DQVLFVAINCWWP-----------------------QGKCRKQK 80 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------hHHHHHhc
Confidence 45899999999999999999999999999996 3467777776643 5677 589
Q ss_pred cccccceEEEECCCCcE
Q 016404 280 NIKGIPALVLIGPDGKT 296 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v 296 (390)
+|.++||++++ ++|+.
T Consensus 81 ~I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 81 HFFYFPVIHLY-YRSRG 96 (113)
T ss_pred CCcccCEEEEE-ECCcc
Confidence 99999999999 56664
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-13 Score=104.72 Aligned_cols=72 Identities=14% Similarity=0.400 Sum_probs=59.8
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
..|++++|+||++||++|+.+.|.+.++++++++.+ +.+..|++| .+ ..++++|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d--~~---------------------~~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAG--HE---------------------RRLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecc--cc---------------------HHHHHHcC
Confidence 468999999999999999999999999999997643 555555544 32 57889999
Q ss_pred cCCCCeEEEEcCCCcccc
Q 016404 120 VDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~ 137 (390)
|.++|++++++ +|+.+.
T Consensus 77 V~~~Pt~~i~~-~g~~~~ 93 (111)
T cd02963 77 AHSVPAIVGII-NGQVTF 93 (111)
T ss_pred CccCCEEEEEE-CCEEEE
Confidence 99999999995 887653
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-13 Score=110.83 Aligned_cols=87 Identities=21% Similarity=0.323 Sum_probs=61.2
Q ss_pred CCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhH
Q 016404 32 QGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETL 110 (390)
Q Consensus 32 ~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 110 (390)
.|+ +++++ +.+|+||++||++|++++|.|++++++++ ++|++|++|.... ...+ ..++.+.
T Consensus 43 ~G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~------~~fp---~~~~~~~ 104 (153)
T TIGR02738 43 QGRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGL------TGFP---DPLPATP 104 (153)
T ss_pred cchhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcc------cccc---cccCCch
Confidence 355 55544 45999999999999999999999999873 6799999986431 1111 1111111
Q ss_pred HHHHHHhc---CcCCCCeEEEEcCCCcccc
Q 016404 111 HKKLRIRY---RVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 111 ~~~l~~~~---~v~~~P~~~~~d~~G~i~~ 137 (390)
......| ++.++|+++++|++|.++.
T Consensus 105 -~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 105 -EVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred -HHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 2233445 8899999999999988653
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=103.15 Aligned_cols=95 Identities=22% Similarity=0.463 Sum_probs=65.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.||+++++||++||++|+.+.+.+.+..+--.. ...++.++.+.++.............+. +.......++++.||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARY-LKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCE-EHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcC
Confidence 479999999999999999999988865442221 1246889999888765444444332221 222234568999999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++|++|+++.+
T Consensus 80 v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp --SSSEEEECTTTSCEEEE
T ss_pred CCccCEEEEEcCCCCEEEE
Confidence 9999999999999998876
|
... |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=107.80 Aligned_cols=90 Identities=19% Similarity=0.319 Sum_probs=69.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.++++++++.+ .++.++.|++|.. .+++++|+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~---~~v~f~~VDvd~~-----------------------~~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN---NNLKFGKIDIGRF-----------------------PNVAEKFR 99 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc---CCeEEEEEECCCC-----------------------HHHHHHcC
Confidence 357999999999999999999999999999864 5688888888764 57788888
Q ss_pred ccc------cceEEEECCCCcEEeeCcchhhhhcCccCCCCCh
Q 016404 281 IKG------IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTE 317 (390)
Q Consensus 281 v~~------~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~ 317 (390)
|.+ +||++++ ++|+.+.+........-+..++-++.
T Consensus 100 V~~~~~v~~~PT~ilf-~~Gk~v~r~~G~~~~~~~~~~~~~~~ 141 (152)
T cd02962 100 VSTSPLSKQLPTIILF-QGGKEVARRPYYNDSKGRAVPFTFSK 141 (152)
T ss_pred ceecCCcCCCCEEEEE-ECCEEEEEEeccccCccccccccccH
Confidence 887 9999999 68988877433333333444444443
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=114.11 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=86.1
Q ss_pred ceeecCCCccccCccCC-CEE-EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh--HHHHHHHhC--
Q 016404 26 EFLLSRQGKVPLSSCGG-KTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKCM-- 99 (390)
Q Consensus 26 ~~l~~~~g~~~l~~~~g-k~v-ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~~~~~~~-- 99 (390)
+.+.+.+|.++++++.| |++ |++||++|||.|..+++.|.++++++++.+ ++|++|++|.... .|.+.+++.
T Consensus 8 F~~~~~~g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~~~i~~~~~ 85 (203)
T cd03016 8 FEADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWIEDIEEYTG 85 (203)
T ss_pred eEEecCCCcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHhhHHHhcC
Confidence 34666777789999988 655 557889999999999999999999999887 8999999996432 232322221
Q ss_pred CCcceecChhHHHHHHHhcCcC----C----CCeEEEEcCCCccccccc
Q 016404 100 PWLAVPFDETLHKKLRIRYRVD----R----IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v~----~----~P~~~~~d~~G~i~~~~~ 140 (390)
.-+.+|+..|....+++.||+. + .|+.+|||++|+|+....
T Consensus 86 ~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~ 134 (203)
T cd03016 86 VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILY 134 (203)
T ss_pred CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEe
Confidence 1256677777779999999985 2 357999999999986543
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.4e-13 Score=117.90 Aligned_cols=119 Identities=12% Similarity=0.118 Sum_probs=90.5
Q ss_pred hhccCcce-eec-CCC--c-cccCcc-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh--h
Q 016404 20 LASEGVEF-LLS-RQG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--N 90 (390)
Q Consensus 20 ~~~~~~~~-l~~-~~g--~-~~l~~~-~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~--~ 90 (390)
++...+++ +.+ .+| . ++|+++ +||+++|+|| +.||++|..+++.|.++++++++.| ++|++|++|... .
T Consensus 70 vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~ 147 (261)
T PTZ00137 70 VGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHK 147 (261)
T ss_pred CCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHH
Confidence 34344444 433 234 4 899997 8998888888 8999999999999999999999887 899999998632 2
Q ss_pred HHHHH-HHhC--CCcceecChhHHHHHHHhcCcC-----CCCeEEEEcCCCccccccc
Q 016404 91 GFEEH-FKCM--PWLAVPFDETLHKKLRIRYRVD-----RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 91 ~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~~~d~~G~i~~~~~ 140 (390)
.|.+. .++. .-+.+|+..|....+++.||+. ..|+.++||++|+|++...
T Consensus 148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~ 205 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAV 205 (261)
T ss_pred HHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEE
Confidence 33332 2222 2356777777779999999985 5899999999999987554
|
|
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=99.77 Aligned_cols=68 Identities=22% Similarity=0.405 Sum_probs=56.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+|+ ++|+|||+||++|+.+.|.+.++++.++. .++.+..|.++. ...++++|+
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~-----------------------~~~~~~~~~ 68 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDD---LGINVAKVDVTQ-----------------------EPGLSGRFF 68 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc---CCeEEEEEEccC-----------------------CHhHHHHcC
Confidence 455 68999999999999999999999987753 467777776664 356889999
Q ss_pred ccccceEEEECCCCcE
Q 016404 281 IKGIPALVLIGPDGKT 296 (390)
Q Consensus 281 v~~~P~~~lid~~G~v 296 (390)
|.++||++++ ++|++
T Consensus 69 i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 69 VTALPTIYHA-KDGVF 83 (101)
T ss_pred CcccCEEEEe-CCCCE
Confidence 9999999998 78875
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=9e-13 Score=119.49 Aligned_cols=88 Identities=23% Similarity=0.354 Sum_probs=69.8
Q ss_pred CeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHH
Q 016404 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR 272 (390)
Q Consensus 193 ~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (390)
+...+++++|+++||+||++||++|+.+.|.|++++++|. +.|++|++|.... ..+|... .+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~-----------~~fp~~~-~d 218 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG------IEVLPVSVDGGPL-----------PGFPNAR-PD 218 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC------cEEEEEeCCCCcc-----------ccCCccc-CC
Confidence 3456778889999999999999999999999999999874 6899999987531 1233332 24
Q ss_pred HHHHHHccccccceEEEECCCCcEEe
Q 016404 273 QDLCRIFNIKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 273 ~~l~~~~~v~~~P~~~lid~~G~v~~ 298 (390)
..+++.|||.++|+++|+|++|+.+.
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred HHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 56889999999999999999654443
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=102.02 Aligned_cols=70 Identities=27% Similarity=0.557 Sum_probs=60.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.|++++|+||++||++|+.+.|.+.++++.+. ..+.++.|++|.+. ...+++.|+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~v~~~~~~---------------------~~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD----GLVQVAAVDCDEDK---------------------NKPLCGKYG 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc----CCceEEEEecCccc---------------------cHHHHHHcC
Confidence 36889999999999999999999999999986 45788888887632 467899999
Q ss_pred ccccceEEEECCCCc
Q 016404 281 IKGIPALVLIGPDGK 295 (390)
Q Consensus 281 v~~~P~~~lid~~G~ 295 (390)
|.++|+++++++++.
T Consensus 72 i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 72 VQGFPTLKVFRPPKK 86 (109)
T ss_pred CCcCCEEEEEeCCCc
Confidence 999999999977763
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-12 Score=104.53 Aligned_cols=71 Identities=27% Similarity=0.569 Sum_probs=60.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++|+|+||++||++|+.+.|.|.++++++. .++.++.|..+. ...++++|+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~-----------------------~~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS----GKVRFVKVNTEA-----------------------ERELSARFR 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEeCCC-----------------------CHHHHHhcC
Confidence 46899999999999999999999999999876 456676666654 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 104 V~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 104 IRSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CCccCEEEEE-ECCEEEEE
Confidence 9999999998 58988876
|
|
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=105.80 Aligned_cols=120 Identities=22% Similarity=0.351 Sum_probs=101.7
Q ss_pred HHhhccCCceEE-eC-CCC---eeeecccCCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC-
Q 016404 177 QLLAIEGRDYVL-SR-DHR---KITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD- 249 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~-~g~---~~~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~- 249 (390)
.++|.++|+|+. .. .|. +++++++.||+++|.||.. .-+.|..++..+++.|++|++ .+++|+++|+|..
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~---~g~eVigvS~Ds~f 79 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK---RGVEVIGVSTDSVF 79 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH---cCCEEEEEecCcHH
Confidence 467999999999 33 553 9999999999999999954 445599999999999999998 8999999999984
Q ss_pred -HHHHHHhhhcCC---cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016404 250 -HKEFDLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 250 -~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
+.+|.+...+.. -..+|...|...++++.||+. ++-.+++|||+|+|++.
T Consensus 80 sH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 80 SHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred HHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 577888865444 378899999999999999974 46789999999999876
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.4e-13 Score=114.24 Aligned_cols=102 Identities=18% Similarity=0.321 Sum_probs=81.2
Q ss_pred ccCcc-CCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh--hHHHH-HHHhCC--CcceecCh
Q 016404 36 PLSSC-GGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEE-HFKCMP--WLAVPFDE 108 (390)
Q Consensus 36 ~l~~~-~gk~vll~F~a~-~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~--~~~~~-~~~~~~--~~~~~~~~ 108 (390)
+++++ +||+++|+||+. ||+.|..+++.|.+++++|++.+ ++|++|++|... ..|.+ +.+..+ -+.+|+..
T Consensus 27 ~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fplls 104 (200)
T PRK15000 27 NFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVA 104 (200)
T ss_pred eHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEE
Confidence 34444 799999999985 99999999999999999999887 899999999543 23333 222233 24677777
Q ss_pred hHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 109 TLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 109 ~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
|....+++.||+. ++|+.++||++|+|++..
T Consensus 105 D~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~ 141 (200)
T PRK15000 105 DVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQV 141 (200)
T ss_pred CCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEE
Confidence 7778999999997 699999999999998654
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=114.68 Aligned_cols=112 Identities=14% Similarity=0.187 Sum_probs=89.4
Q ss_pred eeecCCCcccc-CccCCCEEEE-EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh--HHHHHHHhC-C-
Q 016404 27 FLLSRQGKVPL-SSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKCM-P- 100 (390)
Q Consensus 27 ~l~~~~g~~~l-~~~~gk~vll-~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~~~~~~~-~- 100 (390)
.+.+.+|++.+ ++++||+++| +||++||+.|..+++.|.+++++|++.| ++|++||+|.... .|.+++++. .
T Consensus 17 ~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~~~~~~~~~ 94 (215)
T PRK13191 17 EVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVMWIEKNLKV 94 (215)
T ss_pred EeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhcCC
Confidence 36777888555 5579997666 7789999999999999999999999887 8999999996543 466666542 1
Q ss_pred CcceecChhHHHHHHHhcCcC-------CCCeEEEEcCCCccccccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVD-------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~-------~~P~~~~~d~~G~i~~~~~ 140 (390)
-+.+|+..|....+++.||+. ..|+.++||++|+|++...
T Consensus 95 ~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~ 141 (215)
T PRK13191 95 EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILY 141 (215)
T ss_pred CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEe
Confidence 256777777779999999974 4799999999999986544
|
|
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.7e-13 Score=101.86 Aligned_cols=76 Identities=21% Similarity=0.549 Sum_probs=62.3
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
.+.....+|+++++|||+|||||+.+.|.+.+++.+|.+ +.++-|++|. . ..+
T Consensus 14 ~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde--~---------------------~~~ 66 (106)
T KOG0907|consen 14 LSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE--L---------------------EEV 66 (106)
T ss_pred HHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc--C---------------------HhH
Confidence 334444579999999999999999999999999999986 3466666664 2 789
Q ss_pred HHhcCcCCCCeEEEEcCCCccccc
Q 016404 115 RIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
++.+++..+||++++. +|+.+.+
T Consensus 67 ~~~~~V~~~PTf~f~k-~g~~~~~ 89 (106)
T KOG0907|consen 67 AKEFNVKAMPTFVFYK-GGEEVDE 89 (106)
T ss_pred HHhcCceEeeEEEEEE-CCEEEEE
Confidence 9999999999999994 7776643
|
|
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=100.78 Aligned_cols=70 Identities=19% Similarity=0.393 Sum_probs=56.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|.||++||++|+.+.|.+.+++++++.. +.+..| |.+.. ..++++|+|
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~v--d~~~~---------------------~~~~~~~~i 71 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSV--DCQKY---------------------ESLCQQANI 71 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEE--ECCch---------------------HHHHHHcCC
Confidence 4679999999999999999999999999998643 445544 44443 688999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++||+++++.+|+.+
T Consensus 72 ~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 72 RAYPTIRLYPGNASKY 87 (104)
T ss_pred CcccEEEEEcCCCCCc
Confidence 9999999997553544
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=102.00 Aligned_cols=68 Identities=22% Similarity=0.384 Sum_probs=56.8
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+||++||++|+.+.|.|++++++|++ +.++.|..+ . . .++++|+|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-----v~f~~vd~~--~---------------------~-~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-----TKFVKINAE--K---------------------A-FLVNYLDI 74 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-----cEEEEEEch--h---------------------h-HHHHhcCC
Confidence 47899999999999999999999999999853 445544443 2 4 78999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ ++|+.+.+
T Consensus 75 ~~~Pt~~~f-~~G~~v~~ 91 (113)
T cd02957 75 KVLPTLLVY-KNGELIDN 91 (113)
T ss_pred CcCCEEEEE-ECCEEEEE
Confidence 999999999 78888876
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-12 Score=102.15 Aligned_cols=75 Identities=20% Similarity=0.469 Sum_probs=58.5
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCc-EEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTE-LEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~-~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
-.+++++|.||++||++|+.+.|.+.++++.+++...+ -.+.++.+|++.+ ..++++|
T Consensus 16 ~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~---------------------~~l~~~~ 74 (108)
T cd02996 16 QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE---------------------SDIADRY 74 (108)
T ss_pred hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---------------------HHHHHhC
Confidence 35789999999999999999999999999988643110 1255555555543 6899999
Q ss_pred CcCCCCeEEEEcCCCccc
Q 016404 119 RVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~ 136 (390)
+++++|+++++ ++|++.
T Consensus 75 ~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 75 RINKYPTLKLF-RNGMMM 91 (108)
T ss_pred CCCcCCEEEEE-eCCcCc
Confidence 99999999999 478743
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=99.39 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=58.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+|+|||.|+|+||+||+.+.|.|.+++++|++ .+.++.|.+|. ..++++.|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~----~~~f~kVDVDe-----------------------v~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK----MASIYLVDVDK-----------------------VPVYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC----ceEEEEEeccc-----------------------cHHHHHhcC
Confidence 469999999999999999999999999999963 25666666664 478999999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.+.||++++ ++|+-+..
T Consensus 66 I~amPtfvff-kngkh~~~ 83 (114)
T cd02986 66 ISYIPSTIFF-FNGQHMKV 83 (114)
T ss_pred ceeCcEEEEE-ECCcEEEE
Confidence 9999999999 55554433
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=112.72 Aligned_cols=107 Identities=22% Similarity=0.227 Sum_probs=86.7
Q ss_pred cCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHH---h---CCC
Q 016404 30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---C---MPW 101 (390)
Q Consensus 30 ~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~---~~~ 101 (390)
+.+|+ ++|++++||+++|+|| +.||++|..+++.|.+++++|++.+ ++|++|+.|..... ..+.. . ..-
T Consensus 23 ~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~-~~~~~~~~~~~~~~~ 99 (199)
T PTZ00253 23 NGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAH-LQWTLQERKKGGLGT 99 (199)
T ss_pred CCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHH-HHHHhChHhhCCccc
Confidence 56677 9999999999999999 4889999999999999999999887 99999999865432 22211 1 123
Q ss_pred cceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
+.+|+..|...++++.||+. .+|+.++||++|+++...
T Consensus 100 ~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~ 143 (199)
T PTZ00253 100 MAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQIT 143 (199)
T ss_pred cccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEE
Confidence 56778777789999999985 468999999999988643
|
|
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-12 Score=109.94 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=50.0
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCC
Q 016404 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDR 122 (390)
Q Consensus 43 k~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 122 (390)
..++++|||+||++|+.+.|.|.++.+++.+ +.++.+|. + |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~------~~F~~V~~-------------------------d----~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS------LEFYVVNL-------------------------A----DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC------cEEEEEcc-------------------------c----cCccc
Confidence 5679999999999999999999999999854 55555551 1 89999
Q ss_pred CCeEEEEcCCCccccc
Q 016404 123 IPSLIPLASDGTLIEE 138 (390)
Q Consensus 123 ~P~~~~~d~~G~i~~~ 138 (390)
+|+++++. +|+.+.+
T Consensus 63 vPtfv~~~-~g~~i~r 77 (204)
T PTZ00062 63 YGVFEFYQ-NSQLINS 77 (204)
T ss_pred ceEEEEEE-CCEEEee
Confidence 99999995 8887754
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=119.17 Aligned_cols=241 Identities=13% Similarity=0.183 Sum_probs=136.7
Q ss_pred cchhhhhhccCcceeecCCCc--cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhH
Q 016404 14 SDFLTVLASEGVEFLLSRQGK--VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91 (390)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~g~--~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 91 (390)
.+|...+.....+.+...+.. ..+.......+++.|-.....+|+.....+.++++++++.. +.++.+|..+
T Consensus 205 ~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----i~f~~~d~~~-- 278 (462)
T TIGR01130 205 SDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKF----VNFAVADEED-- 278 (462)
T ss_pred HHHHHHHHHcCCCceEeeCCcchhhHhCCCCceeEEEEecCCchHHHHHHHHHHHHHHHCCCCe----EEEEEecHHH--
Confidence 356667776667776666555 22332221222333334455668899999999999887521 4444455433
Q ss_pred HHHHHHhCCCcceecChhHHHHHHHhcCcC--CCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhh
Q 016404 92 FEEHFKCMPWLAVPFDETLHKKLRIRYRVD--RIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSK 169 (390)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (390)
...+++.+++. .+|++++++.+|...+... . .......+..+.......
T Consensus 279 -------------------~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~-----~-----~~~~~~~i~~fi~~~~~g 329 (462)
T TIGR01130 279 -------------------FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMD-----Q-----EEFSSENLEAFVKDFLDG 329 (462)
T ss_pred -------------------hHHHHHHcCCCccCCceEEEEeCCcccccCCC-----c-----CCCCHHHHHHHHHHHhcC
Confidence 26788889987 6999999997762221110 0 012222332222111110
Q ss_pred hcccchhHHhhccCCc----eEEeCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEE
Q 016404 170 RQGGKLEQLLAIEGRD----YVLSRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 244 (390)
Q Consensus 170 ~~~~~~~~l~g~~~p~----f~l~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v 244 (390)
..... ....+.|. -...+.|.++.-.-. .++.|+|+||++||++|+.+.|.+.++++.++. ...++.++.+
T Consensus 330 ~~~~~---~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~i~~~~i 405 (462)
T TIGR01130 330 KLKPY---LKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD-AESDVVIAKM 405 (462)
T ss_pred CCCee---eccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc-CCCcEEEEEE
Confidence 00000 00111111 111333443332211 468999999999999999999999999999974 1236777777
Q ss_pred ecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHH
Q 016404 245 STDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE 324 (390)
Q Consensus 245 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~ 324 (390)
.++.+ .+.. +++.++|+++++.+++++. .....|... .+.+.
T Consensus 406 d~~~n------------------------~~~~-~~i~~~Pt~~~~~~~~~~~------~~~~~g~~~-------~~~l~ 447 (462)
T TIGR01130 406 DATAN------------------------DVPP-FEVEGFPTIKFVPAGKKSE------PVPYDGDRT-------LEDFS 447 (462)
T ss_pred ECCCC------------------------ccCC-CCccccCEEEEEeCCCCcC------ceEecCcCC-------HHHHH
Confidence 76642 2233 8899999999996555420 011234333 66677
Q ss_pred HHHHHhc
Q 016404 325 TALKKEG 331 (390)
Q Consensus 325 ~~~~~~~ 331 (390)
+.+.+.+
T Consensus 448 ~~l~~~~ 454 (462)
T TIGR01130 448 KFIAKHA 454 (462)
T ss_pred HHHHhcC
Confidence 7676644
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-12 Score=98.89 Aligned_cols=71 Identities=24% Similarity=0.434 Sum_probs=59.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|.|||+||++|+.+.|.+.++.+++. ..+.+..|+++. ...+++.|+|
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~~~-----------------------~~~~~~~~~i 71 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALK----GKVKVGSVDCQK-----------------------YESLCQQANI 71 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCcEEEEEECCc-----------------------hHHHHHHcCC
Confidence 4799999999999999999999999999986 456777776664 4678999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++..+|+.+.+
T Consensus 72 ~~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 72 RAYPTIRLYPGNASKYHS 89 (104)
T ss_pred CcccEEEEEcCCCCCceE
Confidence 999999999665465544
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-12 Score=97.78 Aligned_cols=70 Identities=21% Similarity=0.363 Sum_probs=55.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|.||++||++|+.+.|.|++++++++. .+.++.+..++.+. ...+++.|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~~~~vd~~~-----------------------~~~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS-SGSPVRVGKLDATA-----------------------YSSIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh-cCCcEEEEEEECcc-----------------------CHhHHhhcC
Confidence 357899999999999999999999999999864 12345566565543 357889999
Q ss_pred ccccceEEEECCCCc
Q 016404 281 IKGIPALVLIGPDGK 295 (390)
Q Consensus 281 v~~~P~~~lid~~G~ 295 (390)
|.++|++++++ +|.
T Consensus 70 I~~~Pt~~l~~-~~~ 83 (104)
T cd03000 70 VRGYPTIKLLK-GDL 83 (104)
T ss_pred CccccEEEEEc-CCC
Confidence 99999999993 443
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-12 Score=99.08 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=57.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++|+|+|.|+++||+||+.+.|.|.++++++++. +.++.|++| +. .+++++|++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVD--ev---------------------~dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVD--KV---------------------PVYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecc--cc---------------------HHHHHhcCc
Confidence 6899999999999999999999999999999753 334444444 43 689999999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
+..||++++. +|+-+.
T Consensus 67 ~amPtfvffk-ngkh~~ 82 (114)
T cd02986 67 SYIPSTIFFF-NGQHMK 82 (114)
T ss_pred eeCcEEEEEE-CCcEEE
Confidence 9999999996 665543
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-12 Score=98.67 Aligned_cols=77 Identities=17% Similarity=0.316 Sum_probs=61.0
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
.+||+++|+||++||++|+.+.+.+ .++.+.+++ + +.++.|+++.+.. ....+++
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~-------------------~~~~~~~ 66 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDP-------------------EITALLK 66 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCH-------------------HHHHHHH
Confidence 3689999999999999999999987 577777765 3 6677776654321 1268889
Q ss_pred hcCcCCCCeEEEEcC-CCccccc
Q 016404 117 RYRVDRIPSLIPLAS-DGTLIEE 138 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~-~G~i~~~ 138 (390)
+|++.++|+++++++ +|+.+.+
T Consensus 67 ~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 67 RFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred HcCCCCCCEEEEECCCCCCCCcc
Confidence 999999999999998 7877643
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-12 Score=112.72 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=86.1
Q ss_pred ceeecCCCccccCc-cCCCEEE-EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh--HHHHHHHh-CC
Q 016404 26 EFLLSRQGKVPLSS-CGGKTIC-LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKC-MP 100 (390)
Q Consensus 26 ~~l~~~~g~~~l~~-~~gk~vl-l~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~~~~~~-~~ 100 (390)
+++.+.+|++++++ ++||+++ ++||++||+.|..+++.|.+++++|++.+ ++|++||+|.... +|.+.+.+ .+
T Consensus 18 F~~~~~~g~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw~~~~~~~~g 95 (222)
T PRK13189 18 FEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKWVEWIKEKLG 95 (222)
T ss_pred cEeEcCCCCEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHHhHHHhcC
Confidence 34677777777776 4999655 57789999999999999999999999877 8999999996443 23332222 22
Q ss_pred -CcceecChhHHHHHHHhcCcC-------CCCeEEEEcCCCcccccc
Q 016404 101 -WLAVPFDETLHKKLRIRYRVD-------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 101 -~~~~~~~~~~~~~l~~~~~v~-------~~P~~~~~d~~G~i~~~~ 139 (390)
-+.+|+..|....+++.||+. .+|+.+|||++|+|++..
T Consensus 96 ~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 96 VEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred cCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 256777777778999999975 469999999999997654
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=100.45 Aligned_cols=69 Identities=28% Similarity=0.463 Sum_probs=59.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.|++++|.||++||++|+.+.|.+.++++.+++. +.++.|++|.+.. ..++++|++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~~---------------------~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDKN---------------------KPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCcccc---------------------HHHHHHcCC
Confidence 4789999999999999999999999999998754 6778887775433 689999999
Q ss_pred CCCCeEEEEcCCC
Q 016404 121 DRIPSLIPLASDG 133 (390)
Q Consensus 121 ~~~P~~~~~d~~G 133 (390)
.++|+++++++++
T Consensus 73 ~~~Pt~~~~~~~~ 85 (109)
T cd03002 73 QGFPTLKVFRPPK 85 (109)
T ss_pred CcCCEEEEEeCCC
Confidence 9999999998665
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-12 Score=99.46 Aligned_cols=72 Identities=15% Similarity=0.430 Sum_probs=59.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH-Hc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF 279 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 279 (390)
+|++++|.||++||++|+.+.|.+.++++.+++ .++.++.|.+|.+ ...+++ .|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~---~~~~~~~vd~d~~----------------------~~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG---SNVKVAKFNADGE----------------------QREFAKEEL 74 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc---CCeEEEEEECCcc----------------------chhhHHhhc
Confidence 468999999999999999999999999999974 5688888888753 144554 59
Q ss_pred cccccceEEEECCCCcEE
Q 016404 280 NIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~ 297 (390)
+++++||+++++++++..
T Consensus 75 ~v~~~Pti~~f~~~~~~~ 92 (109)
T cd02993 75 QLKSFPTILFFPKNSRQP 92 (109)
T ss_pred CCCcCCEEEEEcCCCCCc
Confidence 999999999998776543
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-12 Score=98.91 Aligned_cols=71 Identities=23% Similarity=0.567 Sum_probs=58.0
Q ss_pred EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc
Q 016404 204 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 283 (390)
Q Consensus 204 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 283 (390)
+++|+||++||++|+.+.|.+.+++++++. ...++.++.|..+. ...+++.|+|.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~vd~~~-----------------------~~~~~~~~~v~~ 73 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN-ENPSVKIAKVDCTQ-----------------------HRELCSEFQVRG 73 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhc-cCCcEEEEEEECCC-----------------------ChhhHhhcCCCc
Confidence 499999999999999999999999999973 12357777666554 357889999999
Q ss_pred cceEEEECCCCcEEee
Q 016404 284 IPALVLIGPDGKTIST 299 (390)
Q Consensus 284 ~P~~~lid~~G~v~~~ 299 (390)
+|+++++ ++|+.+.+
T Consensus 74 ~Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 74 YPTLLLF-KDGEKVDK 88 (102)
T ss_pred CCEEEEE-eCCCeeeE
Confidence 9999999 67776544
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=97.64 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=59.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+||++||++|+.+.|.|.++.++++ ++.++-|..+. ...++++|+|
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----~i~f~~Vd~~~-----------------------~~~l~~~~~v 73 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----ETKFIKVNAEK-----------------------APFLVEKLNI 73 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----CCEEEEEEccc-----------------------CHHHHHHCCC
Confidence 4789999999999999999999999999885 35676666664 3679999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++ ++|+++.+
T Consensus 74 ~~vPt~l~f-k~G~~v~~ 90 (113)
T cd02989 74 KVLPTVILF-KNGKTVDR 90 (113)
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 68887766
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-12 Score=95.71 Aligned_cols=71 Identities=21% Similarity=0.444 Sum_probs=60.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++|+++||++||+.|+.+.|.+.++.+++. .++.++.++.|. ..++++.++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~~v~~~~id~d~-----------------------~~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD----GAVHFVEIDIDE-----------------------DQEIAEAAG 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEECCC-----------------------CHHHHHHCC
Confidence 35899999999999999999999999998886 456777777664 367889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 65 v~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 65 IMGTPTVQFF-KDKELVKE 82 (97)
T ss_pred CeeccEEEEE-ECCeEEEE
Confidence 9999999999 57888866
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-12 Score=98.25 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=57.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccC--CceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTAN--HCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~--~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
+++++|+|||+||++|+.+.|.+.++++.+++... ..+.+..|.+|. +..++++|
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-----------------------~~~l~~~~ 74 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-----------------------ESDIADRY 74 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-----------------------CHHHHHhC
Confidence 57899999999999999999999999998864111 246666666664 36799999
Q ss_pred cccccceEEEECCCCcE
Q 016404 280 NIKGIPALVLIGPDGKT 296 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v 296 (390)
+|+++|+++++ ++|++
T Consensus 75 ~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 75 RINKYPTLKLF-RNGMM 90 (108)
T ss_pred CCCcCCEEEEE-eCCcC
Confidence 99999999999 67774
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-12 Score=102.40 Aligned_cols=86 Identities=26% Similarity=0.453 Sum_probs=63.9
Q ss_pred cCC-CEEEEEEecCCChhhhhhHHHHH---HHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH
Q 016404 40 CGG-KTICLFFSANWCRPCKTFTPQLV---QLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 40 ~~g-k~vll~F~a~~C~~C~~~~p~l~---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
.+| |+|+|+||++||++|+.+.|.+. ++.+.+++. +.++.|++|.+.... . ++........++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~ 77 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVT-D---------FDGEALSEKELA 77 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceee-c---------cCCCCccHHHHH
Confidence 468 99999999999999999999885 566666543 777888877553211 0 111112347899
Q ss_pred HhcCcCCCCeEEEEcCC-Cccccc
Q 016404 116 IRYRVDRIPSLIPLASD-GTLIEE 138 (390)
Q Consensus 116 ~~~~v~~~P~~~~~d~~-G~i~~~ 138 (390)
.+|++.++|++++++++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999988 787754
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-12 Score=99.03 Aligned_cols=71 Identities=13% Similarity=0.370 Sum_probs=58.2
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH-hc
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI-RY 118 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 118 (390)
-+||+++|.||++||++|+.+.|.+.++++.+++.+ +.+..|++|.+. ..++. .|
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~----------------------~~~~~~~~ 74 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQ----------------------REFAKEEL 74 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccc----------------------hhhHHhhc
Confidence 368999999999999999999999999999998644 677777666432 35665 59
Q ss_pred CcCCCCeEEEEcCCCc
Q 016404 119 RVDRIPSLIPLASDGT 134 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~ 134 (390)
++.++||++++++++.
T Consensus 75 ~v~~~Pti~~f~~~~~ 90 (109)
T cd02993 75 QLKSFPTILFFPKNSR 90 (109)
T ss_pred CCCcCCEEEEEcCCCC
Confidence 9999999999986654
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-12 Score=96.28 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=61.5
Q ss_pred CCcEEEEEEccCC--CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 201 AGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 201 ~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
.|.+++|.||++| ||+|+.+.|.|.+++++|. +.+.++.|.+|.. ..++.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~----~~v~f~kVdid~~-----------------------~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP----GRFRAAVVGRADE-----------------------QALAAR 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC----CcEEEEEEECCCC-----------------------HHHHHH
Confidence 4578999999997 9999999999999999997 4566777777753 689999
Q ss_pred ccccccceEEEECCCCcEEee
Q 016404 279 FNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~v~~~ 299 (390)
|+|+++||++++ ++|+++.+
T Consensus 79 f~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 79 FGVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred cCCCcCCEEEEE-ECCEEEEE
Confidence 999999999999 78888776
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=97.76 Aligned_cols=77 Identities=26% Similarity=0.485 Sum_probs=59.1
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+||++||++|+.+.|.+.++++++++ ....+.+..|+.+.+. ...+++.|+|
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRK-WRPVVRVAAVDCADEE---------------------NVALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHh-cCCceEEEEEeccchh---------------------hHHHHHhCCC
Confidence 37999999999999999999999999999864 2234666666554332 4678999999
Q ss_pred cccceEEEECCCCcEEeeCc
Q 016404 282 KGIPALVLIGPDGKTISTNG 301 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g 301 (390)
+++|+++++ ++|......|
T Consensus 77 ~~~Pt~~lf-~~~~~~~~~~ 95 (114)
T cd02992 77 TGYPTLRYF-PPFSKEATDG 95 (114)
T ss_pred CCCCEEEEE-CCCCccCCCC
Confidence 999999999 4444444444
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.7e-12 Score=98.06 Aligned_cols=73 Identities=23% Similarity=0.365 Sum_probs=57.4
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|+||++||++|+.+.|.+.++++++++....+.+..|+++.+.. ..++++|+++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~---------------------~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN---------------------VALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh---------------------HHHHHhCCCC
Confidence 4799999999999999999999999999997643235555554443332 6889999999
Q ss_pred CCCeEEEEcCCCccc
Q 016404 122 RIPSLIPLASDGTLI 136 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~ 136 (390)
++|+++++. +|...
T Consensus 78 ~~Pt~~lf~-~~~~~ 91 (114)
T cd02992 78 GYPTLRYFP-PFSKE 91 (114)
T ss_pred CCCEEEEEC-CCCcc
Confidence 999999996 55433
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-12 Score=102.01 Aligned_cols=79 Identities=20% Similarity=0.497 Sum_probs=61.2
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
+..+..+||+|+|+|||+||++|+.+.|.+.+..+..... ..++.|++|.+.+ ..
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~----------------------~~ 66 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE----------------------PK 66 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC----------------------ch
Confidence 4555567999999999999999999999999977755432 3477778775542 23
Q ss_pred HHhcCcCC--CCeEEEEcCCCccccc
Q 016404 115 RIRYRVDR--IPSLIPLASDGTLIEE 138 (390)
Q Consensus 115 ~~~~~v~~--~P~~~~~d~~G~i~~~ 138 (390)
.+.|++.+ +|++++++++|+++.+
T Consensus 67 ~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 67 DEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred hhhcccCCCccceEEEECCCCCCchh
Confidence 35677765 9999999999998754
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=94.75 Aligned_cols=86 Identities=27% Similarity=0.677 Sum_probs=68.0
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
++++||+||++||++|+.+.|.|.++.+++. .++.++.|..+. ...++++|+|
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~~~-----------------------~~~l~~~~~v 69 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYK----DNVKFAKVDCDE-----------------------NKELCKKYGV 69 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTT----TTSEEEEEETTT-----------------------SHHHHHHTTC
T ss_pred CCCEEEEEeCCCCCccccccceecccccccc----cccccchhhhhc-----------------------cchhhhccCC
Confidence 5899999999999999999999999999987 366777776664 4789999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
.++|+++++ .+|+.+.+ ..|... .+.|.+.+++
T Consensus 70 ~~~Pt~~~~-~~g~~~~~-------~~g~~~-------~~~l~~~i~~ 102 (103)
T PF00085_consen 70 KSVPTIIFF-KNGKEVKR-------YNGPRN-------AESLIEFIEK 102 (103)
T ss_dssp SSSSEEEEE-ETTEEEEE-------EESSSS-------HHHHHHHHHH
T ss_pred CCCCEEEEE-ECCcEEEE-------EECCCC-------HHHHHHHHHc
Confidence 999999999 56655544 456544 5566555553
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-12 Score=107.68 Aligned_cols=78 Identities=13% Similarity=0.227 Sum_probs=65.6
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~ 96 (390)
..++.+.+|+ ++|++++||++||.|||+||++|. .++.|++++++|++.| ++|++++++ .+.+++++|+
T Consensus 7 ~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~~f~ 83 (183)
T PRK10606 7 TTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIKTYC 83 (183)
T ss_pred CcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHHHHH
Confidence 3568899999 999999999999999999999996 6999999999999887 999999986 3556788888
Q ss_pred H-hCCCcceec
Q 016404 97 K-CMPWLAVPF 106 (390)
Q Consensus 97 ~-~~~~~~~~~ 106 (390)
+ +++ +.+|+
T Consensus 84 ~~~~g-~~Fpv 93 (183)
T PRK10606 84 RTTWG-VTFPM 93 (183)
T ss_pred HHccC-CCcee
Confidence 7 444 33444
|
|
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=97.43 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=58.4
Q ss_pred cEEEEEEccCCCcc--cH--hhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 203 KTIGLYFGAHWCPP--CR--SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 203 k~vlv~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
.++|++||++||+| |+ .+.|.+.+++.++-+ ..++.|+.|++|. +..++++
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~--~~~v~~~kVD~d~-----------------------~~~La~~ 82 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE--DKGIGFGLVDSKK-----------------------DAKVAKK 82 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh--cCCCEEEEEeCCC-----------------------CHHHHHH
Confidence 68999999999988 99 788899999998821 1567888888775 4789999
Q ss_pred ccccccceEEEECCCCcEEe
Q 016404 279 FNIKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~v~~ 298 (390)
|||.++||+++| ++|+++.
T Consensus 83 ~~I~~iPTl~lf-k~G~~v~ 101 (120)
T cd03065 83 LGLDEEDSIYVF-KDDEVIE 101 (120)
T ss_pred cCCccccEEEEE-ECCEEEE
Confidence 999999999999 6777654
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-12 Score=99.28 Aligned_cols=96 Identities=26% Similarity=0.459 Sum_probs=66.4
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.+||++++.||++||++|+.+.+.+.+..+-......++.++.++++.+.+...++....+. +.....+.++++.||
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYG 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcC
Confidence 36899999999999999999999988755432221123778888888766544444443221 222345678999999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
+.++|+++++|++|+++.+
T Consensus 80 v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp --SSSEEEECTTTSCEEEE
T ss_pred CCccCEEEEEcCCCCEEEE
Confidence 9999999999999997743
|
... |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-12 Score=97.30 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=58.0
Q ss_pred cCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecCh
Q 016404 30 SRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108 (390)
Q Consensus 30 ~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
.+++. +.. -++|+ ++|.||++||++|+.+.|.|.++++.++..+ +.+..| |.+.+
T Consensus 5 ~l~~~~f~~-~~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~v--d~~~~------------------ 60 (101)
T cd02994 5 ELTDSNWTL-VLEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKV--DVTQE------------------ 60 (101)
T ss_pred EcChhhHHH-HhCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEE--EccCC------------------
Confidence 34444 442 23566 6899999999999999999999999775433 445544 44433
Q ss_pred hHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016404 109 TLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 109 ~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
..++++|++.++||++++ ++|++
T Consensus 61 ---~~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 61 ---PGLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred ---HhHHHHcCCcccCEEEEe-CCCCE
Confidence 578899999999999998 57864
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=120.21 Aligned_cols=84 Identities=18% Similarity=0.344 Sum_probs=65.1
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
+.+++.. +...-.+++.++|.||++||++|+++.|.+.++++.+++.+ ..+.++.+|++.+
T Consensus 34 v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~--~~i~~~~vd~~~~---------------- 95 (477)
T PTZ00102 34 VTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKK--SEIVLASVDATEE---------------- 95 (477)
T ss_pred cEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcC--CcEEEEEEECCCC----------------
Confidence 3444444 43333468899999999999999999999999999887654 3466666676654
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~ 134 (390)
..++++|++.++|++++++.++.
T Consensus 96 -----~~l~~~~~i~~~Pt~~~~~~g~~ 118 (477)
T PTZ00102 96 -----MELAQEFGVRGYPTIKFFNKGNP 118 (477)
T ss_pred -----HHHHHhcCCCcccEEEEEECCce
Confidence 78999999999999999975443
|
|
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=95.86 Aligned_cols=70 Identities=23% Similarity=0.467 Sum_probs=58.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.+.++++++.++. ..++.++.+..+. ...+++.|+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~-----------------------~~~~~~~~~ 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG--DPDIVLAKVDATA-----------------------EKDLASRFG 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc--CCceEEEEEEccc-----------------------hHHHHHhCC
Confidence 578999999999999999999999999999874 1246666665553 467889999
Q ss_pred ccccceEEEECCCCc
Q 016404 281 IKGIPALVLIGPDGK 295 (390)
Q Consensus 281 v~~~P~~~lid~~G~ 295 (390)
|.++|+++++++++.
T Consensus 67 i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 67 VSGFPTIKFFPKGKK 81 (102)
T ss_pred CCcCCEEEEecCCCc
Confidence 999999999987776
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-12 Score=115.64 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=69.1
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
..++++.|+++||+||++||++|+.++|.|++++++++ ++|++|++|.+.. ..+|.. ..+..+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~-~~d~~l 221 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNA-RPDAGQ 221 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCcc-cCCHHH
Confidence 78889999999999999999999999999999999873 6799999987543 112322 123567
Q ss_pred HHhcCcCCCCeEEEEcCCCccc
Q 016404 115 RIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
+++|||.++|++++++++|..+
T Consensus 222 a~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 222 AQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred HHHcCCCcCCeEEEEECCCCEE
Confidence 8999999999999999855444
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.3e-12 Score=98.17 Aligned_cols=85 Identities=22% Similarity=0.475 Sum_probs=65.8
Q ss_pred ceeecCCCc-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 26 EFLLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~-~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
+.+...+++ +...-. .+++++|+||++||++|+.+.|.|+++++++.+. +.+..+++|..
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~--------------- 64 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN--------------- 64 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC---------------
Confidence 334555555 432222 4789999999999999999999999999998764 66777776643
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|++.++|++++++ +|+++.
T Consensus 65 --------~~~~~~~~v~~~Pt~~~~~-~G~~~~ 89 (109)
T PRK09381 65 --------PGTAPKYGIRGIPTLLLFK-NGEVAA 89 (109)
T ss_pred --------hhHHHhCCCCcCCEEEEEe-CCeEEE
Confidence 4677899999999999994 888764
|
|
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=98.44 Aligned_cols=70 Identities=16% Similarity=0.331 Sum_probs=58.3
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|||+|||+||+||+.+.|.|.+++++++ +.+.|+-|.+|. .+++++.|+|
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~----~~~~~~kVDVDe-----------------------~~dla~~y~I 75 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIK----NFAVIYLVDITE-----------------------VPDFNTMYEL 75 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcC----CceEEEEEECCC-----------------------CHHHHHHcCc
Confidence 4899999999999999999999999999986 346677777775 4789999999
Q ss_pred cccceEE-EECCCCc-EEee
Q 016404 282 KGIPALV-LIGPDGK-TIST 299 (390)
Q Consensus 282 ~~~P~~~-lid~~G~-v~~~ 299 (390)
.+.|+++ ++ ++|+ .+.+
T Consensus 76 ~~~~t~~~ff-k~g~~~vd~ 94 (142)
T PLN00410 76 YDPCTVMFFF-RNKHIMIDL 94 (142)
T ss_pred cCCCcEEEEE-ECCeEEEEE
Confidence 9887777 66 7777 4444
|
|
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=101.97 Aligned_cols=74 Identities=19% Similarity=0.345 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|+||++||++|+.+.|.++++++++++.+ +.++.|++|.. ..++++|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~-----------------------~~la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRF-----------------------PNVAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCC-----------------------HHHHHHcCc
Confidence 56899999999999999999999999999987544 66666666543 578888898
Q ss_pred CC------CCeEEEEcCCCccccccc
Q 016404 121 DR------IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 121 ~~------~P~~~~~d~~G~i~~~~~ 140 (390)
.+ +||++++. +|+.+.+..
T Consensus 101 ~~~~~v~~~PT~ilf~-~Gk~v~r~~ 125 (152)
T cd02962 101 STSPLSKQLPTIILFQ-GGKEVARRP 125 (152)
T ss_pred eecCCcCCCCEEEEEE-CCEEEEEEe
Confidence 87 99999996 898876544
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-12 Score=103.30 Aligned_cols=71 Identities=20% Similarity=0.615 Sum_probs=58.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++|+++|+||++||++|+.+.|.|.++++++.+. +.++.| |.+.. ..++++|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~v--d~~~~---------------------~~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKV--NTEAE---------------------RELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEE--eCCCC---------------------HHHHHhcCC
Confidence 5899999999999999999999999999987654 444444 44432 678999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++|++++++ +|+++.+
T Consensus 105 ~~~Ptlii~~-~G~~v~~ 121 (139)
T PRK10996 105 RSIPTIMIFK-NGQVVDM 121 (139)
T ss_pred CccCEEEEEE-CCEEEEE
Confidence 9999999996 8887643
|
|
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-12 Score=97.47 Aligned_cols=69 Identities=23% Similarity=0.522 Sum_probs=55.1
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCC
Q 016404 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRI 123 (390)
Q Consensus 44 ~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 123 (390)
+++|.||++||++|+.+.|.+.++++++++....+.++.| |.+.+ ..++++|++.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~v--d~~~~---------------------~~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKV--DCTQH---------------------RELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEE--ECCCC---------------------hhhHhhcCCCcC
Confidence 4999999999999999999999999999762222555554 44432 578899999999
Q ss_pred CeEEEEcCCCccc
Q 016404 124 PSLIPLASDGTLI 136 (390)
Q Consensus 124 P~~~~~d~~G~i~ 136 (390)
|+++++ ++|+.+
T Consensus 75 Pt~~~~-~~g~~~ 86 (102)
T cd03005 75 PTLLLF-KDGEKV 86 (102)
T ss_pred CEEEEE-eCCCee
Confidence 999999 477654
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.3e-12 Score=96.96 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=55.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|.||++||++|+.+.|.|.++++.+++.+..+.+..+ |.+.. ..++++|++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~v--d~~~~---------------------~~~~~~~~I 70 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKL--DATAY---------------------SSIASEFGV 70 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEE--ECccC---------------------HhHHhhcCC
Confidence 4679999999999999999999999999999765433444444 43332 578899999
Q ss_pred CCCCeEEEEcCCC
Q 016404 121 DRIPSLIPLASDG 133 (390)
Q Consensus 121 ~~~P~~~~~d~~G 133 (390)
.++|++++++ +|
T Consensus 71 ~~~Pt~~l~~-~~ 82 (104)
T cd03000 71 RGYPTIKLLK-GD 82 (104)
T ss_pred ccccEEEEEc-CC
Confidence 9999999995 44
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=101.33 Aligned_cols=119 Identities=20% Similarity=0.398 Sum_probs=93.0
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCCC---HHHHH
Q 016404 180 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEFD 254 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~~ 254 (390)
....++|++ +.+|+.+++++++||++||+|.-+.||. |...+..|.++.+++.+ ...++++++|++|++ .+..+
T Consensus 29 ~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~-~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 29 PRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE-EGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp SCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH-TTTTEEEEEEESSTTTC-HHHHH
T ss_pred CccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh-ccCceEEEEEEeCCCCCCHHHHH
Confidence 455788999 9999999999999999999999999987 99999999999999986 356899999999975 35566
Q ss_pred HhhhcC--CcccccCCchHHHHHHHHccccc----------------cceEEEECCCCcEEee
Q 016404 255 LNHSIM--PWLAIPYEDRARQDLCRIFNIKG----------------IPALVLIGPDGKTIST 299 (390)
Q Consensus 255 ~~~~~~--~~~~~~~~~~~~~~l~~~~~v~~----------------~P~~~lid~~G~v~~~ 299 (390)
++.+.+ .|..+....+....+++.|++.. ...++||||+|+++..
T Consensus 108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 666533 35555555555678888888631 2358999999999876
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=94.52 Aligned_cols=75 Identities=23% Similarity=0.453 Sum_probs=58.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.++.+.++. ...+.++.+..+.+. ...+++.|+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~---------------------~~~~~~~~~ 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE--DGKGVLAAVDCTKPE---------------------HDALKEEYN 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh--CCceEEEEEECCCCc---------------------cHHHHHhCC
Confidence 357899999999999999999999999998863 134555555555321 367889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 73 i~~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 73 VKGFPTFKYF-ENGKFVEK 90 (104)
T ss_pred CccccEEEEE-eCCCeeEE
Confidence 9999998888 57876655
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=92.87 Aligned_cols=70 Identities=20% Similarity=0.453 Sum_probs=58.1
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+||++||++|+.+.|.|.++.+++. .++.++.+..+. ...+++.|++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~----~~i~~~~vd~~~-----------------------~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF----PSVLFLSIEAEE-----------------------LPEISEKFEI 66 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC----CceEEEEEcccc-----------------------CHHHHHhcCC
Confidence 5899999999999999999999999998863 455565554432 3678899999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ .+|+++.+
T Consensus 67 ~~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 67 TAVPTFVFF-RNGTIVDR 83 (97)
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 58888776
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=106.60 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=57.8
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+|||+||++|+.+.|.+++++++++ ..+.+..|..+. +..++++|+|
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~----~~v~~~~VD~~~-----------------------~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK----GQVNVADLDATR-----------------------ALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcC----CCeEEEEecCcc-----------------------cHHHHHHcCC
Confidence 4789999999999999999999999999987 345555554443 4678999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||+++++ +|+++..
T Consensus 105 ~~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 105 KGYPTLLLFD-KGKMYQY 121 (224)
T ss_pred CcCCEEEEEE-CCEEEEe
Confidence 9999999996 7877654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.3e-12 Score=110.21 Aligned_cols=71 Identities=24% Similarity=0.536 Sum_probs=60.4
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.+-+||||+||+|||++|+..+|.|+++..+++.. ++.+.+|+|.+ ..++.+||
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-----f~LakvN~D~~---------------------p~vAaqfg 94 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-----FKLAKVNCDAE---------------------PMVAAQFG 94 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-----eEEEEecCCcc---------------------hhHHHHhC
Confidence 34679999999999999999999999999999886 45555554443 68999999
Q ss_pred cCCCCeEEEEcCCCcccc
Q 016404 120 VDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~ 137 (390)
|+++|++++|. +|+.+.
T Consensus 95 iqsIPtV~af~-dGqpVd 111 (304)
T COG3118 95 VQSIPTVYAFK-DGQPVD 111 (304)
T ss_pred cCcCCeEEEee-CCcCcc
Confidence 99999999994 998873
|
|
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-11 Score=93.39 Aligned_cols=70 Identities=23% Similarity=0.585 Sum_probs=58.0
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|.||++||++|+.+.|.|.++++++.. .+.++.+|.+.. ..++++|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-----~i~~~~vd~~~~---------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-----SVLFLSIEAEEL---------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-----ceEEEEEccccC---------------------HHHHHhcCCc
Confidence 79999999999999999999999999998732 255566665443 6789999999
Q ss_pred CCCeEEEEcCCCccccc
Q 016404 122 RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~ 138 (390)
++|++++++ +|+++.+
T Consensus 68 ~~Pt~~~~~-~g~~~~~ 83 (97)
T cd02984 68 AVPTFVFFR-NGTIVDR 83 (97)
T ss_pred cccEEEEEE-CCEEEEE
Confidence 999999996 8877644
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=94.74 Aligned_cols=70 Identities=36% Similarity=0.750 Sum_probs=58.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.|.++++++++ + +.++.+|.+.. ..++++|++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~----v~~~~vd~~~~---------------------~~l~~~~~v 69 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-N----VKFAKVDCDEN---------------------KELCKKYGV 69 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-T----SEEEEEETTTS---------------------HHHHHHTTC
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-c----cccchhhhhcc---------------------chhhhccCC
Confidence 479999999999999999999999999999987 3 45555554443 689999999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|+++++. +|+...
T Consensus 70 ~~~Pt~~~~~-~g~~~~ 85 (103)
T PF00085_consen 70 KSVPTIIFFK-NGKEVK 85 (103)
T ss_dssp SSSSEEEEEE-TTEEEE
T ss_pred CCCCEEEEEE-CCcEEE
Confidence 9999999996 776654
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-11 Score=91.17 Aligned_cols=70 Identities=29% Similarity=0.591 Sum_probs=59.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.|.++.+++. .++.++.+..+.. ..+.+.|++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE----GKVKFVKLNVDEN-----------------------PDIAAKYGI 66 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHHcCC
Confidence 4689999999999999999999999998886 4577888777653 578899999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ ++|+++.+
T Consensus 67 ~~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 67 RSIPTLLLF-KNGKEVDR 83 (101)
T ss_pred CcCCEEEEE-eCCcEeee
Confidence 999999999 67877655
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-11 Score=98.68 Aligned_cols=68 Identities=10% Similarity=0.297 Sum_probs=56.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++|+|+|||+||+||+.+.|.|.++++++++. +.++-|++| +. .++++.|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVD--e~---------------------~dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDIT--EV---------------------PDFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECC--CC---------------------HHHHHHcCc
Confidence 6789999999999999999999999999998775 455666665 32 689999999
Q ss_pred CCCCeEE-EEcCCCcc
Q 016404 121 DRIPSLI-PLASDGTL 135 (390)
Q Consensus 121 ~~~P~~~-~~d~~G~i 135 (390)
.+.|+++ ++ ++|++
T Consensus 76 ~~~~t~~~ff-k~g~~ 90 (142)
T PLN00410 76 YDPCTVMFFF-RNKHI 90 (142)
T ss_pred cCCCcEEEEE-ECCeE
Confidence 9877766 66 57763
|
|
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=94.33 Aligned_cols=72 Identities=18% Similarity=0.320 Sum_probs=60.1
Q ss_pred cCCCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016404 40 CGGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 40 ~~gk~vll~F~a~~--C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
..|.+++|+||++| ||+|+.+.|.|.++++++.+. +.++-|++| .+ ..++.+
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid--~~---------------------~~la~~ 78 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRA--DE---------------------QALAAR 78 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECC--CC---------------------HHHHHH
Confidence 45788999999997 999999999999999999765 445555554 33 589999
Q ss_pred cCcCCCCeEEEEcCCCccccc
Q 016404 118 YRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 118 ~~v~~~P~~~~~d~~G~i~~~ 138 (390)
|+|+++||++++. +|+++.+
T Consensus 79 f~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 79 FGVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred cCCCcCCEEEEEE-CCEEEEE
Confidence 9999999999996 8887754
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=94.37 Aligned_cols=74 Identities=22% Similarity=0.503 Sum_probs=57.4
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++++|.||++||++|+.+.|.+.++++.+++.+ .+.++.++++.+.. ..++++|+
T Consensus 15 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~---------------------~~~~~~~~ 72 (104)
T cd02997 15 KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEH---------------------DALKEEYN 72 (104)
T ss_pred hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCcc---------------------HHHHHhCC
Confidence 357799999999999999999999999999987532 24444444443212 68899999
Q ss_pred cCCCCeEEEEcCCCccc
Q 016404 120 VDRIPSLIPLASDGTLI 136 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~ 136 (390)
+.++|+++++. +|+++
T Consensus 73 i~~~Pt~~~~~-~g~~~ 88 (104)
T cd02997 73 VKGFPTFKYFE-NGKFV 88 (104)
T ss_pred CccccEEEEEe-CCCee
Confidence 99999999885 77754
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-11 Score=93.28 Aligned_cols=70 Identities=20% Similarity=0.537 Sum_probs=56.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.+.++++++.+ +.++.+|.+.. ..++++|++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~------~~~~~vd~~~~---------------------~~~~~~~~v 69 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK------MVFVKVDVDEL---------------------SEVAEKENI 69 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC------cEEEEEECcch---------------------HHHHHHCCC
Confidence 578999999999999999999999999987643 44444454433 678999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++|+++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ceeeEEEEE-eCCeEEEE
Confidence 999999988 58887744
|
|
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-11 Score=101.59 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=56.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|||+||++||++|+.+.|.|.+++++|.. +.++-|.++ . . .++..|+|
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-----vkF~kVd~d--~---------------------~-~l~~~f~v 133 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-----VKFCKIRAS--A---------------------T-GASDEFDT 133 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-----eEEEEEecc--c---------------------h-hhHHhCCC
Confidence 35899999999999999999999999999853 455555444 2 2 68889999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++ ++|+++.+
T Consensus 134 ~~vPTllly-k~G~~v~~ 150 (175)
T cd02987 134 DALPALLVY-KGGELIGN 150 (175)
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 78888866
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=99.17 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=94.3
Q ss_pred ccCcceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC---hhHHHHHH
Q 016404 22 SEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD---ENGFEEHF 96 (390)
Q Consensus 22 ~~~~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~-~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~---~~~~~~~~ 96 (390)
....++|.|.+|+ +++++++||+++|+|.-+.|| .|...+..|.++.+++.+.+.++++++|++|.. .+.+++|.
T Consensus 31 ~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 31 IVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp SSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred cCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHH
Confidence 3456779999999 999999999999999999997 899999999999999988777799999999964 45688888
Q ss_pred HhCC--CcceecChhHHHHHHHhcCcC----------------CCCeEEEEcCCCcccc
Q 016404 97 KCMP--WLAVPFDETLHKKLRIRYRVD----------------RIPSLIPLASDGTLIE 137 (390)
Q Consensus 97 ~~~~--~~~~~~~~~~~~~l~~~~~v~----------------~~P~~~~~d~~G~i~~ 137 (390)
+..+ |..+.+..+....+++.|++. +...++++|++|+++.
T Consensus 111 ~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~ 169 (174)
T PF02630_consen 111 KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA 169 (174)
T ss_dssp HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence 8554 566666666778888888753 4468899999998874
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-11 Score=95.26 Aligned_cols=81 Identities=17% Similarity=0.395 Sum_probs=62.6
Q ss_pred cCCCEEEEEEec-------CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHH
Q 016404 40 CGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHK 112 (390)
Q Consensus 40 ~~gk~vll~F~a-------~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (390)
.+|++|+|+||| +||++|+.+.|.+.++.++++++ +.++.|++|.... -.+...
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~----------------w~d~~~ 79 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPY----------------WRDPNN 79 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCccc----------------ccCcch
Confidence 358999999999 99999999999999999998743 6677777764320 011236
Q ss_pred HHHHhcCcC-CCCeEEEEcCCCcccccc
Q 016404 113 KLRIRYRVD-RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 113 ~l~~~~~v~-~~P~~~~~d~~G~i~~~~ 139 (390)
.++..|++. ++||+++++..++++..+
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred hhHhccCcccCCCEEEEEcCCceecchh
Confidence 888999998 999999997555555443
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.6e-11 Score=90.92 Aligned_cols=65 Identities=23% Similarity=0.492 Sum_probs=55.1
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.+.+++++++ ..+.++.+..+. +..++++|+|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~id~~~-----------------------~~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK----GIVKVGAVDADV-----------------------HQSLAQQYGV 70 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCceEEEEECcc-----------------------hHHHHHHCCC
Confidence 4679999999999999999999999999986 456777776654 4678899999
Q ss_pred cccceEEEECCC
Q 016404 282 KGIPALVLIGPD 293 (390)
Q Consensus 282 ~~~P~~~lid~~ 293 (390)
+++|++++++.+
T Consensus 71 ~~~P~~~~~~~~ 82 (103)
T cd03001 71 RGFPTIKVFGAG 82 (103)
T ss_pred CccCEEEEECCC
Confidence 999999999644
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-11 Score=92.18 Aligned_cols=70 Identities=20% Similarity=0.459 Sum_probs=58.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++++||++||++|+.+.|.+.++++++++. +.++.|++| .. .++++++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d--~~---------------------~~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDID--ED---------------------QEIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECC--CC---------------------HHHHHHCCC
Confidence 5799999999999999999999999999998753 555555544 32 578899999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|++++++ +|+++.
T Consensus 66 ~~vPt~~i~~-~g~~v~ 81 (97)
T cd02949 66 MGTPTVQFFK-DKELVK 81 (97)
T ss_pred eeccEEEEEE-CCeEEE
Confidence 9999999996 787763
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-11 Score=95.52 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=62.6
Q ss_pred CCcEEEEEEcc-------CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHH
Q 016404 201 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 273 (390)
Q Consensus 201 ~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (390)
+|++|+|+||| +||++|+.+.|.|.++.++++ .++.++.|.+|... +..+.+.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~----~~v~fv~Vdvd~~~----------------~w~d~~~ 79 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP----EDCVFIYCDVGDRP----------------YWRDPNN 79 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC----CCCEEEEEEcCCcc----------------cccCcch
Confidence 46899999999 999999999999999999986 45778888877532 1112246
Q ss_pred HHHHHcccc-ccceEEEECCCCcEEee
Q 016404 274 DLCRIFNIK-GIPALVLIGPDGKTIST 299 (390)
Q Consensus 274 ~l~~~~~v~-~~P~~~lid~~G~v~~~ 299 (390)
.++..|+|. ++||++++...++++..
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred hhHhccCcccCCCEEEEEcCCceecch
Confidence 888999998 99999999665555543
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-11 Score=92.45 Aligned_cols=69 Identities=23% Similarity=0.453 Sum_probs=57.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+. ...++++|++
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----~~~~~~vd~~~-----------------------~~~~~~~~~v 69 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----KMVFVKVDVDE-----------------------LSEVAEKENI 69 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----CcEEEEEECcc-----------------------hHHHHHHCCC
Confidence 5789999999999999999999999998764 35566555543 3678999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ceeeEEEEE-eCCeEEEE
Confidence 999998888 79988876
|
|
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=90.64 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=55.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
++|+|+|+|+++||++|+.+.+.. .++.+.+. .++.+|.|..+...+ ..+.+ ......
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~----~~fv~VkvD~~~~~~-~~~~~--------------~~~~~~ 74 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN----ENFVPIKVDREERPD-VDKIY--------------MNAAQA 74 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh----CCEEEEEEeCCcCcH-HHHHH--------------HHHHHH
Confidence 469999999999999999987632 34555544 345555555443221 11110 122333
Q ss_pred HccccccceEEEECCCCcEEeeCc
Q 016404 278 IFNIKGIPALVLIGPDGKTISTNG 301 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~~~~g 301 (390)
.|++.++|+++++|++|++++..+
T Consensus 75 ~~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred hcCCCCCCEEEEECCCCCEEeeee
Confidence 679999999999999999998854
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-11 Score=95.34 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++|+|+||++||++|+.+.|.|.++++++.+ +.++-|++| +. ..++++|++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~--~~---------------------~~l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAE--KA---------------------PFLVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcc--cC---------------------HHHHHHCCC
Confidence 568999999999999999999999999998753 445555444 43 579999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||++++. +|+.+.+
T Consensus 74 ~~vPt~l~fk-~G~~v~~ 90 (113)
T cd02989 74 KVLPTVILFK-NGKTVDR 90 (113)
T ss_pred ccCCEEEEEE-CCEEEEE
Confidence 9999999996 8887754
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-11 Score=95.11 Aligned_cols=68 Identities=18% Similarity=0.354 Sum_probs=56.1
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|.||++||++|+.+.|.|+++++++.+ +.++ .+|.+. . .++++|++.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~--~vd~~~---------------------~-~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFV--KINAEK---------------------A-FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEE--EEEchh---------------------h-HHHHhcCCC
Confidence 58999999999999999999999999998853 3344 444332 2 788999999
Q ss_pred CCCeEEEEcCCCccccc
Q 016404 122 RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~ 138 (390)
++|+++++. +|+.+.+
T Consensus 76 ~~Pt~~~f~-~G~~v~~ 91 (113)
T cd02957 76 VLPTLLVYK-NGELIDN 91 (113)
T ss_pred cCCEEEEEE-CCEEEEE
Confidence 999999995 8888754
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-11 Score=92.53 Aligned_cols=70 Identities=23% Similarity=0.510 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|.||++||++|+.+.+.|.++++.++..+ .+.++.+|.+.. ..++++|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~---------------------~~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP---DIVLAKVDATAE---------------------KDLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC---ceEEEEEEccch---------------------HHHHHhCCC
Confidence 78999999999999999999999999999987642 255555555543 688999999
Q ss_pred CCCCeEEEEcCCCc
Q 016404 121 DRIPSLIPLASDGT 134 (390)
Q Consensus 121 ~~~P~~~~~d~~G~ 134 (390)
.++|+++++++++.
T Consensus 68 ~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 68 SGFPTIKFFPKGKK 81 (102)
T ss_pred CcCCEEEEecCCCc
Confidence 99999999986654
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-11 Score=91.57 Aligned_cols=72 Identities=18% Similarity=0.412 Sum_probs=58.4
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|.||++||++|+.+.|.+.++++.++. ..++.++.+..+.. ...+++.|+|
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~----------------------~~~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN--EDDVVIAKVDADEA----------------------NKDLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC--CCCEEEEEEECCCc----------------------chhhHHhCCC
Confidence 46899999999999999999999999999862 24566666666541 2678999999
Q ss_pred cccceEEEECCCCcEE
Q 016404 282 KGIPALVLIGPDGKTI 297 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~ 297 (390)
.++|++++++++|+..
T Consensus 74 ~~~P~~~~~~~~~~~~ 89 (105)
T cd02998 74 SGFPTLKFFPKGSTEP 89 (105)
T ss_pred CCcCEEEEEeCCCCCc
Confidence 9999999997776443
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-11 Score=104.97 Aligned_cols=69 Identities=20% Similarity=0.487 Sum_probs=57.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.++++++++++. +. +..+|.+++ ..++++|+|
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~--~~~VD~~~~---------------------~~l~~~~~I 104 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VN--VADLDATRA---------------------LNLAKRFAI 104 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eE--EEEecCccc---------------------HHHHHHcCC
Confidence 3689999999999999999999999999998754 44 445555543 689999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
+++||+++++ +|+.+
T Consensus 105 ~~~PTl~~f~-~G~~v 119 (224)
T PTZ00443 105 KGYPTLLLFD-KGKMY 119 (224)
T ss_pred CcCCEEEEEE-CCEEE
Confidence 9999999997 78654
|
|
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-11 Score=95.78 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=54.7
Q ss_pred CCEEEEEEecCCChh--hh--hhHHHHHHHHHHHh-hCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 42 GKTICLFFSANWCRP--CK--TFTPQLVQLYDTLR-TRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 42 gk~vll~F~a~~C~~--C~--~~~p~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
..++|++||++||+| |+ .+.|.+.+++.++- ..+ +.++.+|.+++ ..+++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~----v~~~kVD~d~~---------------------~~La~ 81 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG----IGFGLVDSKKD---------------------AKVAK 81 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC----CEEEEEeCCCC---------------------HHHHH
Confidence 469999999999987 99 88888999988872 223 44445554443 69999
Q ss_pred hcCcCCCCeEEEEcCCCccc
Q 016404 117 RYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~ 136 (390)
+|+|+++||+++|. +|+++
T Consensus 82 ~~~I~~iPTl~lfk-~G~~v 100 (120)
T cd03065 82 KLGLDEEDSIYVFK-DDEVI 100 (120)
T ss_pred HcCCccccEEEEEE-CCEEE
Confidence 99999999999996 88865
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.9e-11 Score=92.10 Aligned_cols=70 Identities=30% Similarity=0.567 Sum_probs=56.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh-hHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE-NGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.+++++|.||++||++|+.+.|.+.++++.++.. . .+.++.+|.+. . ..++++|+
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~--~~~~~~id~~~~~---------------------~~~~~~~~ 72 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-D--DVVIAKVDADEAN---------------------KDLAKKYG 72 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-C--CEEEEEEECCCcc---------------------hhhHHhCC
Confidence 4679999999999999999999999999998732 1 24555555444 2 68999999
Q ss_pred cCCCCeEEEEcCCCc
Q 016404 120 VDRIPSLIPLASDGT 134 (390)
Q Consensus 120 v~~~P~~~~~d~~G~ 134 (390)
+.++|++++++++|+
T Consensus 73 i~~~P~~~~~~~~~~ 87 (105)
T cd02998 73 VSGFPTLKFFPKGST 87 (105)
T ss_pred CCCcCEEEEEeCCCC
Confidence 999999999986653
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=108.26 Aligned_cols=72 Identities=26% Similarity=0.518 Sum_probs=59.6
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++++|.|||+||++|+.+.|.+.++++.+++.+.+ +.++.+|++.+ ..++++|+
T Consensus 16 ~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~--v~~~~vd~~~~---------------------~~l~~~~~ 72 (462)
T TIGR01130 16 KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPP--IKLAKVDATEE---------------------KDLAQKYG 72 (462)
T ss_pred hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCc--eEEEEEECCCc---------------------HHHHHhCC
Confidence 36789999999999999999999999999998765433 55566665554 68999999
Q ss_pred cCCCCeEEEEcCCCcc
Q 016404 120 VDRIPSLIPLASDGTL 135 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i 135 (390)
+.++||++++. +|+.
T Consensus 73 i~~~Pt~~~~~-~g~~ 87 (462)
T TIGR01130 73 VSGYPTLKIFR-NGED 87 (462)
T ss_pred CccccEEEEEe-CCcc
Confidence 99999999996 6654
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.2e-11 Score=90.59 Aligned_cols=73 Identities=25% Similarity=0.486 Sum_probs=59.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|.||++||++|+.+.|.+.++++.++ ...++.++.++.+. +..+++.|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~-----------------------~~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK--GDGKVVVAKVDCTA-----------------------NNDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc--cCCceEEEEeeccc-----------------------hHHHHHhCC
Confidence 34689999999999999999999999999985 12567777776654 378899999
Q ss_pred ccccceEEEECCCCcEEe
Q 016404 281 IKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~ 298 (390)
|.++|++++++++|+...
T Consensus 69 i~~~Pt~~~~~~~~~~~~ 86 (101)
T cd02961 69 VRGYPTIKLFPNGSKEPV 86 (101)
T ss_pred CCCCCEEEEEcCCCcccc
Confidence 999999999987764333
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=96.60 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=88.4
Q ss_pred eeecCC---Cc-cccCc-cCCCEEEEEEe-cCCChhhhhh-HHHHHHHHHHHhhCCCcE-EEEEEecCCChhHHHHHHHh
Q 016404 27 FLLSRQ---GK-VPLSS-CGGKTICLFFS-ANWCRPCKTF-TPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEEHFKC 98 (390)
Q Consensus 27 ~l~~~~---g~-~~l~~-~~gk~vll~F~-a~~C~~C~~~-~p~l~~~~~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~ 98 (390)
.|.+.+ |+ ++|++ ++||+++|+|| +.||+.|..+ ++.+.+.++++.+.| . +|++|+.|.. .+.++|.++
T Consensus 9 ~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~-~~~~~~~~~ 85 (155)
T cd03013 9 TLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDP-FVMKAWGKA 85 (155)
T ss_pred EeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCH-HHHHHHHHh
Confidence 366664 88 99999 58887777666 8899999999 999999999999877 7 5999999844 457888888
Q ss_pred CCC-cceecChhHHHHHHHhcCcC------C-----CCeEEEEcCCCccccccc
Q 016404 99 MPW-LAVPFDETLHKKLRIRYRVD------R-----IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 99 ~~~-~~~~~~~~~~~~l~~~~~v~------~-----~P~~~~~d~~G~i~~~~~ 140 (390)
+.. ..+|+..|.+.++++.||+. + ....+++| +|+|++...
T Consensus 86 ~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 86 LGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred hCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence 775 47888788889999999983 1 35678898 798886443
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=89.86 Aligned_cols=66 Identities=23% Similarity=0.451 Sum_probs=54.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|.||++||++|+.+.|.|.++++++... +.+..++++ .+ ..++++|++
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~--~~---------------------~~~~~~~~i 70 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDAD--VH---------------------QSLAQQYGV 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECc--ch---------------------HHHHHHCCC
Confidence 3677999999999999999999999999998754 555555544 32 578899999
Q ss_pred CCCCeEEEEcCCC
Q 016404 121 DRIPSLIPLASDG 133 (390)
Q Consensus 121 ~~~P~~~~~d~~G 133 (390)
+++|++++++ +|
T Consensus 71 ~~~P~~~~~~-~~ 82 (103)
T cd03001 71 RGFPTIKVFG-AG 82 (103)
T ss_pred CccCEEEEEC-CC
Confidence 9999999997 55
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-10 Score=88.84 Aligned_cols=69 Identities=25% Similarity=0.459 Sum_probs=55.7
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHh-hCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLR-TRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
.++++++|.||++||++|+.+.|.+.++++.++ ..+ +.++.+ |.+.+ ..++++|
T Consensus 13 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~v--~~~~~---------------------~~~~~~~ 67 (101)
T cd02961 13 KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGK--VVVAKV--DCTAN---------------------NDLCSEY 67 (101)
T ss_pred hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCc--eEEEEe--eccch---------------------HHHHHhC
Confidence 356699999999999999999999999999985 222 444444 44333 6899999
Q ss_pred CcCCCCeEEEEcCCC
Q 016404 119 RVDRIPSLIPLASDG 133 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G 133 (390)
++.++|++++++++|
T Consensus 68 ~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 68 GVRGYPTIKLFPNGS 82 (101)
T ss_pred CCCCCCEEEEEcCCC
Confidence 999999999998665
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-10 Score=90.99 Aligned_cols=81 Identities=15% Similarity=0.356 Sum_probs=58.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC-
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR- 119 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 119 (390)
.|+.++|+|+++|||+|+.+.|.|.++.++.+ ..++.|++|.+.. .... ......++.+.|+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-----~~~y~vdvd~~~~-----------~~~~-~~~~~~~~~~~~~i 84 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-----APIYYIDSENNGS-----------FEMS-SLNDLTAFRSRFGI 84 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-----CcEEEEECCCccC-----------cCcc-cHHHHHHHHHHcCC
Confidence 57889999999999999999999999998722 5699999985431 0000 0011235555554
Q ss_pred ---cCCCCeEEEEcCCCcccccc
Q 016404 120 ---VDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 120 ---v~~~P~~~~~d~~G~i~~~~ 139 (390)
+.++||++++. +|+.+.+.
T Consensus 85 ~~~i~~~PT~v~~k-~Gk~v~~~ 106 (122)
T TIGR01295 85 PTSFMGTPTFVHIT-DGKQVSVR 106 (122)
T ss_pred cccCCCCCEEEEEe-CCeEEEEE
Confidence 56799999995 99877543
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=91.03 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=57.2
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChh-HHHHHHHhCCCcceecChhH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDEN-GFEEHFKCMPWLAVPFDETL 110 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~-~~~~~~~~~~~~~~~~~~~~ 110 (390)
+..+.-++|+|+|+|+++||++|+.+.+.. .++.+.+.++ ++.|.+|.++. ..... .
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~-----fv~VkvD~~~~~~~~~~--------------~ 68 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN-----FVPIKVDREERPDVDKI--------------Y 68 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC-----EEEEEEeCCcCcHHHHH--------------H
Confidence 444556799999999999999999987633 3455555443 45555554332 11110 0
Q ss_pred HHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 111 HKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 111 ~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.......|++.++|++++++++|++++..
T Consensus 69 ~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 69 MNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 11222367999999999999999998765
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=87.96 Aligned_cols=69 Identities=25% Similarity=0.606 Sum_probs=56.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.+.++.+++.+. +.++.|+.+.+ ..++++|++
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v 66 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDEN-----------------------PDIAAKYGI 66 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCC-----------------------HHHHHHcCC
Confidence 3679999999999999999999999999888654 56666655532 578899999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++|++++++ +|+++
T Consensus 67 ~~~P~~~~~~-~g~~~ 81 (101)
T TIGR01068 67 RSIPTLLLFK-NGKEV 81 (101)
T ss_pred CcCCEEEEEe-CCcEe
Confidence 9999999994 77654
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=97.09 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=54.4
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|||.||++||++|+.+.|.|.+++.+|.. +.++-|.++. ....|++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-----vkFvkI~ad~--------------------------~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-----TKFVKIISTQ--------------------------CIPNYPD 150 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-----CEEEEEEhHH--------------------------hHhhCCC
Confidence 46899999999999999999999999999863 4555554431 2468999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++ ++|+++.+
T Consensus 151 ~~lPTlliy-k~G~~v~~ 167 (192)
T cd02988 151 KNLPTILVY-RNGDIVKQ 167 (192)
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 88888876
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.8e-10 Score=87.01 Aligned_cols=62 Identities=10% Similarity=0.249 Sum_probs=52.9
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
+.++|+||++||++|+.+.|.|.++.+.+ ..+.++.|..|. ...++++|+|.
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~~-----~~i~~~~vd~d~-----------------------~~~l~~~~~v~ 74 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSELS-----DKLKLEIYDFDE-----------------------DKEKAEKYGVE 74 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHhc-----CceEEEEEeCCc-----------------------CHHHHHHcCCC
Confidence 56889999999999999999999998775 346777777775 36789999999
Q ss_pred ccceEEEECC
Q 016404 283 GIPALVLIGP 292 (390)
Q Consensus 283 ~~P~~~lid~ 292 (390)
++|++++++.
T Consensus 75 ~vPt~~i~~~ 84 (113)
T cd02975 75 RVPTTIFLQD 84 (113)
T ss_pred cCCEEEEEeC
Confidence 9999999964
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-10 Score=88.35 Aligned_cols=68 Identities=22% Similarity=0.522 Sum_probs=53.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.+.++++.+++. . .+.++.+|.+. ..++..+++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~--~~~~~~id~~~----------------------~~~~~~~~~ 71 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-D--NVVIAKMDATA----------------------NDVPSEFVV 71 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-C--CEEEEEEeCcc----------------------hhhhhhccC
Confidence 4689999999999999999999999999998762 1 25555555444 246778899
Q ss_pred CCCCeEEEEcCCC
Q 016404 121 DRIPSLIPLASDG 133 (390)
Q Consensus 121 ~~~P~~~~~d~~G 133 (390)
.++|+++++.+++
T Consensus 72 ~~~Pt~~~~~~~~ 84 (104)
T cd02995 72 DGFPTILFFPAGD 84 (104)
T ss_pred CCCCEEEEEcCCC
Confidence 9999999996443
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-10 Score=109.94 Aligned_cols=70 Identities=16% Similarity=0.363 Sum_probs=58.5
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++|||+|||+||++|+.+.|.|+++++++++.+ +.++.|++|.+.. ...+++|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~---------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK---------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc---------------------HHHHHHcC
Confidence 478999999999999999999999999999997655 6777787775542 23457899
Q ss_pred cCCCCeEEEEcCCC
Q 016404 120 VDRIPSLIPLASDG 133 (390)
Q Consensus 120 v~~~P~~~~~d~~G 133 (390)
|.++||+++|. +|
T Consensus 426 I~~~PTii~Fk-~g 438 (463)
T TIGR00424 426 LGSFPTILFFP-KH 438 (463)
T ss_pred CCccceEEEEE-CC
Confidence 99999999996 44
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=88.38 Aligned_cols=65 Identities=26% Similarity=0.452 Sum_probs=54.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+++.++|+||++||++|+.+.|.|+++.+.+ +. ++++.|++|.. ..++++|++
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~-----------------------~~l~~~~~v 73 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDED-----------------------KEKAEKYGV 73 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcC-----------------------HHHHHHcCC
Confidence 3667899999999999999999999998875 22 67777776632 578899999
Q ss_pred CCCCeEEEEcCC
Q 016404 121 DRIPSLIPLASD 132 (390)
Q Consensus 121 ~~~P~~~~~d~~ 132 (390)
.++|++++++.+
T Consensus 74 ~~vPt~~i~~~g 85 (113)
T cd02975 74 ERVPTTIFLQDG 85 (113)
T ss_pred CcCCEEEEEeCC
Confidence 999999999743
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-10 Score=99.31 Aligned_cols=74 Identities=31% Similarity=0.632 Sum_probs=62.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-.|+...+|.|+|+|+|+||+||++.+|.+..++.+|.. .|+..+|-++- +..
T Consensus 14 ~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~------aVFlkVdVd~c---------------------~~t 66 (288)
T KOG0908|consen 14 RELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG------AVFLKVDVDEC---------------------RGT 66 (288)
T ss_pred HhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc------cEEEEEeHHHh---------------------hch
Confidence 346666789999999999999999999999999999954 67777775553 788
Q ss_pred HHhcCcCCCCeEEEEcCCCccc
Q 016404 115 RIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
+..+||...||++++. +|..+
T Consensus 67 aa~~gV~amPTFiff~-ng~ki 87 (288)
T KOG0908|consen 67 AATNGVNAMPTFIFFR-NGVKI 87 (288)
T ss_pred hhhcCcccCceEEEEe-cCeEe
Confidence 8999999999999995 77554
|
|
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=86.80 Aligned_cols=78 Identities=24% Similarity=0.482 Sum_probs=56.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCc-hHHHHHHHHcc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYED-RARQDLCRIFN 280 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 280 (390)
|+.++|+|+++|||+|+.+.|.|.++.++.+ ..|..|++|.+.. ..... ..-.++.+.|+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~------~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQTK------APIYYIDSENNGS-------------FEMSSLNDLTAFRSRFG 83 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhcC------CcEEEEECCCccC-------------cCcccHHHHHHHHHHcC
Confidence 5779999999999999999999999988743 4689999885420 00000 01234556655
Q ss_pred ----ccccceEEEECCCCcEEee
Q 016404 281 ----IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 ----v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+.+.+
T Consensus 84 i~~~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 84 IPTSFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred CcccCCCCCEEEEE-eCCeEEEE
Confidence 5569999999 88888776
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-09 Score=91.38 Aligned_cols=120 Identities=19% Similarity=0.345 Sum_probs=96.9
Q ss_pred CceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCC---CHHHHHHhhh
Q 016404 184 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEFDLNHS 258 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~ 258 (390)
-+|.| +.+|+.++-.++.||++|+||..+.||. |..++..|.+..++..+..+..+.-|+|++|. +.+...++++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 46888 9999999999999999999999999998 99999999999998876433344478999998 4577888888
Q ss_pred cCC--cccccCCchHHHHHHHHcccccc--c-------------eEEEECCCCcEEeeCcch
Q 016404 259 IMP--WLAIPYEDRARQDLCRIFNIKGI--P-------------ALVLIGPDGKTISTNGKE 303 (390)
Q Consensus 259 ~~~--~~~~~~~~~~~~~l~~~~~v~~~--P-------------~~~lid~~G~v~~~~g~~ 303 (390)
... .+.+.-..+.-.++++.|.|.-- | .+|||||+|+.+...|++
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN 261 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN 261 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc
Confidence 655 45566666677899999998422 3 378999999999876644
|
|
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-10 Score=95.46 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++|+|.||++||++|+.+.|.|.++++++.. +.++.+|.+. ..++..|++.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~------vkF~kVd~d~----------------------~~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA------VKFCKIRASA----------------------TGASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC------eEEEEEeccc----------------------hhhHHhCCCC
Confidence 45999999999999999999999999998853 4555555433 2678899999
Q ss_pred CCCeEEEEcCCCccccc
Q 016404 122 RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~ 138 (390)
.+||++++. +|+++.+
T Consensus 135 ~vPTlllyk-~G~~v~~ 150 (175)
T cd02987 135 ALPALLVYK-GGELIGN 150 (175)
T ss_pred CCCEEEEEE-CCEEEEE
Confidence 999999995 8987753
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.1e-10 Score=86.65 Aligned_cols=67 Identities=19% Similarity=0.437 Sum_probs=53.1
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.+.++++.+++ ..++.+..++.+. ..++..+++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~------------------------~~~~~~~~~ 71 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG--DDNVVIAKMDATA------------------------NDVPSEFVV 71 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC--CCCEEEEEEeCcc------------------------hhhhhhccC
Confidence 48899999999999999999999999999863 1345566555543 346677889
Q ss_pred cccceEEEECCCC
Q 016404 282 KGIPALVLIGPDG 294 (390)
Q Consensus 282 ~~~P~~~lid~~G 294 (390)
.++|+++++.+++
T Consensus 72 ~~~Pt~~~~~~~~ 84 (104)
T cd02995 72 DGFPTILFFPAGD 84 (104)
T ss_pred CCCCEEEEEcCCC
Confidence 9999999995444
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.1e-09 Score=90.30 Aligned_cols=115 Identities=21% Similarity=0.472 Sum_probs=91.7
Q ss_pred ceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH---HHHHHhhh-
Q 016404 185 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH---KEFDLNHS- 258 (390)
Q Consensus 185 ~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~---~~~~~~~~- 258 (390)
+|++ +.+|+.+++.+++||+++|+|.-+.||. |..++..|..+.++.......++++++|++|++. +..+++..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 6888 9999999999999999999999999998 9999999999999988335689999999999854 33444444
Q ss_pred c-CC-cccccCCchHHHHHHHHccccc--c-------------ceEEEECCCCcEEee
Q 016404 259 I-MP-WLAIPYEDRARQDLCRIFNIKG--I-------------PALVLIGPDGKTIST 299 (390)
Q Consensus 259 ~-~~-~~~~~~~~~~~~~l~~~~~v~~--~-------------P~~~lid~~G~v~~~ 299 (390)
. .+ |..+....+..+++++.|++.. + ..++++|++|+++..
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT 186 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence 1 11 4455445556778999998752 2 247899999999877
|
|
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=105.29 Aligned_cols=68 Identities=16% Similarity=0.372 Sum_probs=57.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++|||+|||+||++|+.+.|.|.+++++|+. .++.++.|.+|.+. .....+.|+
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~---~~v~~~kVdvD~~~---------------------~~~~~~~~~ 425 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG---SGVKVAKFRADGDQ---------------------KEFAKQELQ 425 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCcEEEEEECCCCc---------------------cHHHHHHcC
Confidence 678999999999999999999999999999974 46888888888642 123446899
Q ss_pred ccccceEEEECC
Q 016404 281 IKGIPALVLIGP 292 (390)
Q Consensus 281 v~~~P~~~lid~ 292 (390)
|.++||+++|..
T Consensus 426 I~~~PTii~Fk~ 437 (463)
T TIGR00424 426 LGSFPTILFFPK 437 (463)
T ss_pred CCccceEEEEEC
Confidence 999999999943
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-10 Score=95.12 Aligned_cols=60 Identities=7% Similarity=0.082 Sum_probs=51.1
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
..++++|||+||++|+.+.|.|.++.++|++ +.++.+|.+ |+|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-------~~F~~V~~d-----------------------------~~V~ 61 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-------LEFYVVNLA-----------------------------DANN 61 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-------cEEEEEccc-----------------------------cCcc
Confidence 4589999999999999999999999999964 666666531 8999
Q ss_pred ccceEEEECCCCcEEee
Q 016404 283 GIPALVLIGPDGKTIST 299 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~ 299 (390)
++|+++++ ++|+++.+
T Consensus 62 ~vPtfv~~-~~g~~i~r 77 (204)
T PTZ00062 62 EYGVFEFY-QNSQLINS 77 (204)
T ss_pred cceEEEEE-ECCEEEee
Confidence 99999999 68888776
|
|
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.3e-09 Score=77.66 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=50.8
Q ss_pred EEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccccc
Q 016404 205 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 284 (390)
Q Consensus 205 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 284 (390)
.+..||++||++|+...|.|.++++.++ ..+.++.|..+.+ .+++++||+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~v 54 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG----DAVEVEYINVMEN-----------------------PQKAMEYGIMAV 54 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc----CceEEEEEeCccC-----------------------HHHHHHcCCccC
Confidence 4678999999999999999999999886 4477777776643 567788999999
Q ss_pred ceEEEECCCCcE
Q 016404 285 PALVLIGPDGKT 296 (390)
Q Consensus 285 P~~~lid~~G~v 296 (390)
|++++ +|+.
T Consensus 55 Pt~~~---~g~~ 63 (82)
T TIGR00411 55 PAIVI---NGDV 63 (82)
T ss_pred CEEEE---CCEE
Confidence 99886 5654
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.8e-10 Score=105.26 Aligned_cols=88 Identities=22% Similarity=0.412 Sum_probs=66.0
Q ss_pred CceEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcc
Q 016404 184 RDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWL 263 (390)
Q Consensus 184 p~f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 263 (390)
...++.+++..+.-.-.....++|.||||||++|++++|.+.+.+..+++ .+-.|....+|.+.
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke---~~s~i~LakVDat~------------- 87 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKE---EGSPVKLAKVDATE------------- 87 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhc---cCCCceeEEeecch-------------
Confidence 33444444444444434457899999999999999999999999999986 33345555566654
Q ss_pred cccCCchHHHHHHHHccccccceEEEECCCCcE
Q 016404 264 AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT 296 (390)
Q Consensus 264 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v 296 (390)
...++.+|+|+++||+-++ ++|+.
T Consensus 88 --------~~~~~~~y~v~gyPTlkiF-rnG~~ 111 (493)
T KOG0190|consen 88 --------ESDLASKYEVRGYPTLKIF-RNGRS 111 (493)
T ss_pred --------hhhhHhhhcCCCCCeEEEE-ecCCc
Confidence 5889999999999999999 66664
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=108.06 Aligned_cols=74 Identities=22% Similarity=0.457 Sum_probs=57.9
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
.+||+|+|+|||+||++|+.+.+.. .++.++++ ++.++.++++.+. +.+.++.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----~~~~v~vDvt~~~-------------------~~~~~l~ 527 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----DTVLLQADVTANN-------------------AEDVALL 527 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----CCEEEEEECCCCC-------------------hhhHHHH
Confidence 4589999999999999999988764 56666663 3556666655431 1246889
Q ss_pred HHccccccceEEEECCCCcEE
Q 016404 277 RIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~G~v~ 297 (390)
++|++.++|+++++|++|+++
T Consensus 528 ~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 528 KHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHcCCCCCCEEEEECCCCCCc
Confidence 999999999999999999985
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-09 Score=84.93 Aligned_cols=100 Identities=12% Similarity=0.256 Sum_probs=66.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
++|+|+|+|++.||++|+.+...+ .++.+... .++.+|-+..|... ....
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~----~~Fv~V~l~~d~td----------------------~~~~- 74 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ----EDFIMLNLVHETTD----------------------KNLS- 74 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH----hCeEEEEEEeccCC----------------------CCcC-
Confidence 469999999999999999998764 23333332 34444444443221 0000
Q ss_pred HccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcC
Q 016404 278 IFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 332 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 332 (390)
..+ .++|+++++|++|+++.+ +..+++...|-.....+..|.+.+++...
T Consensus 75 ~~g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~~m~~a~~ 124 (130)
T cd02960 75 PDG-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIENMKKALK 124 (130)
T ss_pred ccC-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHHHHHHHHH
Confidence 122 579999999999999877 23356666776777778888888876543
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.6e-09 Score=78.43 Aligned_cols=68 Identities=26% Similarity=0.584 Sum_probs=57.0
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
++++|.||++||++|+.+.+.++++.+. . .++.++.++.+. ...+.+.|++.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~----~~~~~~~i~~~~-----------------------~~~~~~~~~v~ 62 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y----PKVKFVKVDVDE-----------------------NPELAEEYGVR 62 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-C----CCceEEEEECCC-----------------------ChhHHHhcCcc
Confidence 7899999999999999999999999888 2 567788887765 36788899999
Q ss_pred ccceEEEECCCCcEEee
Q 016404 283 GIPALVLIGPDGKTIST 299 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~ 299 (390)
++|+++++ ++|+++..
T Consensus 63 ~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 63 SIPTFLFF-KNGKEVDR 78 (93)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 46665544
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.6e-09 Score=100.68 Aligned_cols=68 Identities=18% Similarity=0.423 Sum_probs=56.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH-Hc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF 279 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 279 (390)
+++++||+|||+||++|+.+.|.+.+++++|+. .++.++.|++|.+ ...+++ .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~---~~V~f~kVD~d~~----------------------~~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG---SGVKVAKFRADGD----------------------QKEFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCc----------------------chHHHHhhC
Confidence 578999999999999999999999999999975 5688888877733 245664 69
Q ss_pred cccccceEEEECCC
Q 016404 280 NIKGIPALVLIGPD 293 (390)
Q Consensus 280 ~v~~~P~~~lid~~ 293 (390)
+|.++||++++.++
T Consensus 419 ~I~~~PTil~f~~g 432 (457)
T PLN02309 419 QLGSFPTILLFPKN 432 (457)
T ss_pred CCceeeEEEEEeCC
Confidence 99999999999433
|
|
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-09 Score=102.17 Aligned_cols=67 Identities=18% Similarity=0.413 Sum_probs=55.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH-hcC
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI-RYR 119 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 119 (390)
++++++|+||++||++|+.+.|.+.+++++++..+ +.+..|++|.+. ..++. .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcc----------------------hHHHHhhCC
Confidence 68999999999999999999999999999997655 556555555222 46675 699
Q ss_pred cCCCCeEEEEcC
Q 016404 120 VDRIPSLIPLAS 131 (390)
Q Consensus 120 v~~~P~~~~~d~ 131 (390)
|.++||+++|.+
T Consensus 420 I~~~PTil~f~~ 431 (457)
T PLN02309 420 LGSFPTILLFPK 431 (457)
T ss_pred CceeeEEEEEeC
Confidence 999999999963
|
|
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-08 Score=79.76 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=85.8
Q ss_pred CceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CHHHHHH
Q 016404 184 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFDL 255 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~ 255 (390)
-+|.+ +.+|+.++|++++||++||.-.|+-|+.-. ....|+.||++|++ .++.|+++.++. +.+++.+
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~---~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKD---KGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhh---CCcEEEeccccccccCCCCCHHHHHH
Confidence 46777 999999999999999999999999999977 45689999999987 999999999863 4578888
Q ss_pred hhhcCCcccccCC----------chHHHHHHHHcc-------ccccceEEEECCCCcEEeeC
Q 016404 256 NHSIMPWLAIPYE----------DRARQDLCRIFN-------IKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 256 ~~~~~~~~~~~~~----------~~~~~~l~~~~~-------v~~~P~~~lid~~G~v~~~~ 300 (390)
+....--.++|.. ....+.|...-. |..-=+-+|||++|+|+.|-
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf 143 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF 143 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence 8875444666641 112233333321 22334679999999999983
|
|
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.9e-09 Score=87.55 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=86.6
Q ss_pred cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC--hhHHHHHHHhCCC---cceecCh
Q 016404 35 VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD--ENGFEEHFKCMPW---LAVPFDE 108 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~--~~~~~~~~~~~~~---~~~~~~~ 108 (390)
++++++.||+++|+|| +..-+.|..+...+.+.|++|++.| .+|+++|+|.. ..+|++..++..- ..+|+..
T Consensus 26 i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~Pmia 103 (194)
T COG0450 26 ITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIA 103 (194)
T ss_pred EechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHHHHHHHHhcHHhcCCccceecceEE
Confidence 9999988899999999 7778899999999999999999998 99999999964 3466666655553 6788888
Q ss_pred hHHHHHHHhcCcC------CCCeEEEEcCCCccccc
Q 016404 109 TLHKKLRIRYRVD------RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 109 ~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~ 138 (390)
|...++++.||+- .+-.++++|++|.+.+.
T Consensus 104 D~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 104 DPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred cCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 8889999999985 45689999999988743
|
|
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-08 Score=87.57 Aligned_cols=113 Identities=22% Similarity=0.379 Sum_probs=93.1
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHh-hCCCcEEEEEEecCCCh---hHHHHHHH-
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLR-TRGTELEVIFISFDHDE---NGFEEHFK- 97 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~-~C~~~~p~l~~~~~~~~-~~~~~~~vv~v~~d~~~---~~~~~~~~- 97 (390)
.+.|.+.+|+ +++..++||+++|+|.-+.|| .|..+...|.++.+++. ..+.++.+++|++|.++ +..++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 6789999999 999999999999999999998 89999999999999998 66777999999999654 45677777
Q ss_pred h-CC-CcceecChhHHHHHHHhcCcCC---------------CCeEEEEcCCCcccc
Q 016404 98 C-MP-WLAVPFDETLHKKLRIRYRVDR---------------IPSLIPLASDGTLIE 137 (390)
Q Consensus 98 ~-~~-~~~~~~~~~~~~~l~~~~~v~~---------------~P~~~~~d~~G~i~~ 137 (390)
. .+ |..+....+...++++.|++.. ...++++|++|++..
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~ 185 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG 185 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence 1 12 5666666777888999988762 346788888888764
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-09 Score=95.33 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=62.4
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
.-.++|+||||||+||++..|.|.++--.+++-| +-|..-.+|+++- ..++.+|+|+
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig--~PikVGKlDaT~f---------------------~aiAnefgiq 99 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG--LPIKVGKLDATRF---------------------PAIANEFGIQ 99 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcC--Cceeecccccccc---------------------hhhHhhhccC
Confidence 4689999999999999999999999999998877 5566667777663 7899999999
Q ss_pred CCCeEEEEcCCCcccccc
Q 016404 122 RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~~ 139 (390)
++||+.++..+..+-+|.
T Consensus 100 GYPTIk~~kgd~a~dYRG 117 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAIDYRG 117 (468)
T ss_pred CCceEEEecCCeeeecCC
Confidence 999999997554444444
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-09 Score=106.58 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=60.1
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+..+||+|+|+|||+||++|+.+.+.+ .++.+++++ +.++.++++.+.+ .+
T Consensus 467 l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~~~~-------------------~~ 523 (571)
T PRK00293 467 LAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTANNA-------------------ED 523 (571)
T ss_pred HHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCCCCh-------------------hh
Confidence 334445799999999999999999988865 566666642 5566666553321 23
Q ss_pred HHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 112 KKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
.++.++|++.++|+++++|++|+++
T Consensus 524 ~~l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 524 VALLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCc
Confidence 6889999999999999999999875
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=89.00 Aligned_cols=70 Identities=13% Similarity=0.259 Sum_probs=55.2
Q ss_pred CCcEEEEEEcc---CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGA---HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
++...++.|++ +||++|+.+.|.+.++.+++. ++++..+.+|.+. ..++++
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----~~~i~~v~vd~~~---------------------~~~l~~ 71 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----KLKLEIYDFDTPE---------------------DKEEAE 71 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----CceEEEEecCCcc---------------------cHHHHH
Confidence 33445666777 999999999999999999884 3566677777543 578999
Q ss_pred HccccccceEEEECCCCcEE
Q 016404 278 IFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~ 297 (390)
.|+|.++||+++++ +|+.+
T Consensus 72 ~~~V~~~Pt~~~f~-~g~~~ 90 (215)
T TIGR02187 72 KYGVERVPTTIILE-EGKDG 90 (215)
T ss_pred HcCCCccCEEEEEe-CCeee
Confidence 99999999999994 56654
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.3e-09 Score=89.05 Aligned_cols=67 Identities=10% Similarity=0.262 Sum_probs=54.0
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++|+|.||++||++|+.+.|.|.+++.++.. +.++.+|.+ .....|++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~------vkFvkI~ad------------------------~~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD------TKFVKIIST------------------------QCIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC------CEEEEEEhH------------------------HhHhhCCCC
Confidence 56999999999999999999999999999853 444554422 124789999
Q ss_pred CCCeEEEEcCCCcccccc
Q 016404 122 RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~~ 139 (390)
++||+++|. +|+++.+-
T Consensus 152 ~lPTlliyk-~G~~v~~i 168 (192)
T cd02988 152 NLPTILVYR-NGDIVKQF 168 (192)
T ss_pred CCCEEEEEE-CCEEEEEE
Confidence 999999995 99887544
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-08 Score=85.79 Aligned_cols=116 Identities=21% Similarity=0.288 Sum_probs=93.3
Q ss_pred CcceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhhC-CCcEEEEEEecCC---ChhHHHHHHH
Q 016404 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTR-GTELEVIFISFDH---DENGFEEHFK 97 (390)
Q Consensus 24 ~~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~-~C~~~~p~l~~~~~~~~~~-~~~~~vv~v~~d~---~~~~~~~~~~ 97 (390)
++++|++.+|+ ++-.++.||++||+|.-+.|| .|..+...|.++-+++.+. +..+.-++|++|. +.+.+++|++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 78889999999 999999999999999999999 7999999999988888664 3334579999997 4557788888
Q ss_pred hCC--CcceecChhHHHHHHHhcCcCCC--C-------------eEEEEcCCCcccccc
Q 016404 98 CMP--WLAVPFDETLHKKLRIRYRVDRI--P-------------SLIPLASDGTLIEED 139 (390)
Q Consensus 98 ~~~--~~~~~~~~~~~~~l~~~~~v~~~--P-------------~~~~~d~~G~i~~~~ 139 (390)
... .+.+....+.-+.+|+.|.|..- | .++++||+|+++...
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~ 258 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY 258 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh
Confidence 655 35555566777899999998532 2 567889999887433
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.84 E-value=9e-09 Score=77.27 Aligned_cols=67 Identities=27% Similarity=0.594 Sum_probs=54.5
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|.||++||++|+.+.+.++++.++ . .+ +.++.++++.. ..+++.|++.
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-~~--~~~~~i~~~~~-----------------------~~~~~~~~v~ 62 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-PK--VKFVKVDVDEN-----------------------PELAEEYGVR 62 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C-CC--ceEEEEECCCC-----------------------hhHHHhcCcc
Confidence 48999999999999999999999999887 2 22 66666665532 5788999999
Q ss_pred CCCeEEEEcCCCccc
Q 016404 122 RIPSLIPLASDGTLI 136 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~ 136 (390)
++|++++++ +|+++
T Consensus 63 ~~P~~~~~~-~g~~~ 76 (93)
T cd02947 63 SIPTFLFFK-NGKEV 76 (93)
T ss_pred cccEEEEEE-CCEEE
Confidence 999999996 66644
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=74.78 Aligned_cols=58 Identities=14% Similarity=0.327 Sum_probs=47.6
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCC
Q 016404 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124 (390)
Q Consensus 45 vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 124 (390)
.+..||++||++|+.+.|.|+++++.++.. +.++.|+++.+ .+++++|++.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN-----------------------PQKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC-----------------------HHHHHHcCCccCC
Confidence 467899999999999999999999988643 66666666533 4677889999999
Q ss_pred eEEE
Q 016404 125 SLIP 128 (390)
Q Consensus 125 ~~~~ 128 (390)
++++
T Consensus 56 t~~~ 59 (82)
T TIGR00411 56 AIVI 59 (82)
T ss_pred EEEE
Confidence 9886
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.6e-08 Score=77.16 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=54.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
++|+++|+|+++||++|+.+.... .++.+.+. .+ +|.+..|.+.. ....+++
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~----~~--~v~~~~d~~~~-------------------e~~~~~~ 70 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR----EN--FIFWQCDIDSS-------------------EGQRFLQ 70 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH----hC--EEEEEecCCCc-------------------cHHHHHH
Confidence 469999999999999999986532 34444444 23 44555443210 1357889
Q ss_pred HccccccceEEEECC-CCcEEee
Q 016404 278 IFNIKGIPALVLIGP-DGKTIST 299 (390)
Q Consensus 278 ~~~v~~~P~~~lid~-~G~v~~~ 299 (390)
.|++.++|+++++|+ +|+++.+
T Consensus 71 ~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 71 SYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HhCccCCCeEEEEeCccCcEeEE
Confidence 999999999999999 8999887
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=89.12 Aligned_cols=93 Identities=18% Similarity=0.311 Sum_probs=73.1
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
..|+|+|||.||+.++.+.|.+.+.++.|++. ..+=++|+.++|++. ...++.+|.|.
T Consensus 14 elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-~P~~kvvwg~VDcd~---------------------e~~ia~ky~I~ 71 (375)
T KOG0912|consen 14 ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-FPEGKVVWGKVDCDK---------------------EDDIADKYHIN 71 (375)
T ss_pred eEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-CCCcceEEEEcccch---------------------hhHHhhhhccc
Confidence 67999999999999999999999999999873 333578888888875 57899999999
Q ss_pred ccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhc
Q 016404 283 GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 331 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 331 (390)
.+||+-++ ++|.+..+ .+.|.+. ++.|.+-+++..
T Consensus 72 KyPTlKvf-rnG~~~~r------EYRg~Rs-------VeaL~efi~kq~ 106 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKR------EYRGQRS-------VEALIEFIEKQL 106 (375)
T ss_pred cCceeeee-eccchhhh------hhccchh-------HHHHHHHHHHHh
Confidence 99999999 44444433 2445554 777777776643
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=70.15 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=50.0
Q ss_pred EEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccccc
Q 016404 205 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 284 (390)
Q Consensus 205 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 284 (390)
-+..|+++||++|+...+.|+++.+.+ .++.+..+.++.+ .++++.||+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----~~i~~~~id~~~~-----------------------~~l~~~~~i~~v 53 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-----PNISAEMIDAAEF-----------------------PDLADEYGVMSV 53 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-----CceEEEEEEcccC-----------------------HhHHHHcCCccc
Confidence 367899999999999999999997654 4567777776643 568889999999
Q ss_pred ceEEEECCCCcEEee
Q 016404 285 PALVLIGPDGKTIST 299 (390)
Q Consensus 285 P~~~lid~~G~v~~~ 299 (390)
|++++ +|++++.
T Consensus 54 Pti~i---~~~~~~~ 65 (67)
T cd02973 54 PAIVI---NGKVEFV 65 (67)
T ss_pred CEEEE---CCEEEEe
Confidence 99765 4666654
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=81.04 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=86.7
Q ss_pred HHhhccCCceEE-eCCCCeeeecccCC-cEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHH
Q 016404 177 QLLAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~g~~~~l~~~~g-k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~ 253 (390)
--+|+..|||++ +.+|+.++|..+.| ++||++||.. .-|-|.+..-.+..-|+++++ .+.+|++++.|... ..
T Consensus 63 v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk---a~aeV~GlS~D~s~-sq 138 (211)
T KOG0855|consen 63 VNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK---AGAEVIGLSGDDSA-SQ 138 (211)
T ss_pred eecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh---cCceEEeeccCchH-HH
Confidence 346999999999 99999999999988 5888888854 445599999999999999986 78899999998642 33
Q ss_pred HHhhhcCCcccccC--CchHHHHHHHHccccccc-------eEEEECCCCcE
Q 016404 254 DLNHSIMPWLAIPY--EDRARQDLCRIFNIKGIP-------ALVLIGPDGKT 296 (390)
Q Consensus 254 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~v~~~P-------~~~lid~~G~v 296 (390)
..|... .++|| ..|+.+++.+.+|+...| ..++++++|..
T Consensus 139 KaF~sK---qnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k 187 (211)
T KOG0855|consen 139 KAFASK---QNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVK 187 (211)
T ss_pred HHhhhh---ccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeE
Confidence 333333 34444 667788999999986544 47788776543
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=77.55 Aligned_cols=65 Identities=11% Similarity=0.282 Sum_probs=54.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.|+++++.|+++||++|..+.|.+.+++++++++ +.++.+|.++. ..+++.|++
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-----v~f~~vd~~~~---------------------~~~~~~~~i 64 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-----LLFVVVDADDF---------------------GRHLEYFGL 64 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-----EEEEEEchHhh---------------------HHHHHHcCC
Confidence 3899999999999999999999999999999865 44444554443 578999999
Q ss_pred C--CCCeEEEEcC
Q 016404 121 D--RIPSLIPLAS 131 (390)
Q Consensus 121 ~--~~P~~~~~d~ 131 (390)
. ++|++++++.
T Consensus 65 ~~~~~P~~~~~~~ 77 (103)
T cd02982 65 KEEDLPVIAIINL 77 (103)
T ss_pred ChhhCCEEEEEec
Confidence 9 9999999985
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=73.05 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=46.2
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
-|.||++||++|+.+.|.++++.+++... +.++.+| +. ..+.+|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-----~~~~~v~-~~-----------------------~~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-----AEFEKVT-DM-----------------------NEILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-----eEEEEeC-CH-----------------------HHHHHcCCCcCCE
Confidence 47899999999999999999999988643 4445555 21 2356799999999
Q ss_pred EEEEcCCCccc
Q 016404 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
+++ +|+.+
T Consensus 53 i~i---~G~~~ 60 (76)
T TIGR00412 53 VAV---DGELV 60 (76)
T ss_pred EEE---CCEEE
Confidence 998 67655
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=98.17 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=88.3
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
...+++.||+|||++|+.++|.+.++...++. +..+++..+ |++. +..++..+++.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~--d~~~---------------------~~~~~~~~~v~ 217 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKI--DATV---------------------HKSLASRLEVR 217 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEee--ccch---------------------HHHHhhhhccc
Confidence 56889999999999999999999999999875 323444444 4433 37899999999
Q ss_pred CCCeEEEEcCCCc-cccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhc--cCCceEEeCCCCeeeec
Q 016404 122 RIPSLIPLASDGT-LIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAI--EGRDYVLSRDHRKITVS 198 (390)
Q Consensus 122 ~~P~~~~~d~~G~-i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~--~~p~f~l~~~g~~~~l~ 198 (390)
.+|+++++.++.. +........ .....+.+............+.+..+. ..|.+. +. ......
T Consensus 218 ~~Pt~~~f~~~~~~~~~~~~~R~-----------~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~--~~~~~~ 283 (383)
T KOG0191|consen 218 GYPTLKLFPPGEEDIYYYSGLRD-----------SDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFL-DT--AEFLDS 283 (383)
T ss_pred CCceEEEecCCCccccccccccc-----------HHHHHHHHHhhcCCCCCCcccccccCccccccchh-hh--hhhhhh
Confidence 9999999975555 222211111 111122222211111011111111111 001100 11 000011
Q ss_pred ccCCcEEEEEEccCCCcccHhhHHHHHHHHHH
Q 016404 199 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 230 (390)
Q Consensus 199 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~ 230 (390)
..+-+..++.|+++||.+|....|.+......
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (383)
T KOG0191|consen 284 LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAEL 315 (383)
T ss_pred hHHhhhhHhhhhcchhhcccccchhHHHHHhc
Confidence 11224678899999999999999999888777
|
|
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-08 Score=80.22 Aligned_cols=115 Identities=21% Similarity=0.281 Sum_probs=92.3
Q ss_pred cCCceE----EeCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCCC--HHHHH
Q 016404 182 EGRDYV----LSRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKEFD 254 (390)
Q Consensus 182 ~~p~f~----l~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~~~ 254 (390)
++|+|. ++..-+.++|++++||+|++.||...-.+ |..+.-.+...+.+|++ -+-+|+++|+|.. .-+|.
T Consensus 9 p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~---~n~eVig~S~DS~fshlAW~ 85 (196)
T KOG0852|consen 9 PAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK---LNTEVLGISTDSVFSHLAWI 85 (196)
T ss_pred CCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh---cCCeEEEEeccchhhhhhHh
Confidence 345554 26666789999999999999999655444 99999999999999987 7889999999974 45666
Q ss_pred HhhhcCC---cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016404 255 LNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 255 ~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
..-.+.+ -.++|+..|.+.++++.||+- ++-.+++||++|.++..
T Consensus 86 ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i 139 (196)
T KOG0852|consen 86 NTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQI 139 (196)
T ss_pred cCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence 6655333 456999999999999999983 46679999999999774
|
|
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-08 Score=72.31 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=46.9
Q ss_pred EEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccce
Q 016404 207 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 286 (390)
Q Consensus 207 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 286 (390)
|.||++||++|+...|.+.++.+++. ..+++ +.+|. ...+..||+.++|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~----~~~~~--~~v~~------------------------~~~a~~~~v~~vPt 52 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELG----IDAEF--EKVTD------------------------MNEILEAGVTATPG 52 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcC----CCeEE--EEeCC------------------------HHHHHHcCCCcCCE
Confidence 78999999999999999999999975 34555 44442 12256799999999
Q ss_pred EEEECCCCcEEee
Q 016404 287 LVLIGPDGKTIST 299 (390)
Q Consensus 287 ~~lid~~G~v~~~ 299 (390)
+++ +|+++..
T Consensus 53 i~i---~G~~~~~ 62 (76)
T TIGR00412 53 VAV---DGELVIM 62 (76)
T ss_pred EEE---CCEEEEE
Confidence 888 8888743
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-09 Score=62.93 Aligned_cols=29 Identities=34% Similarity=1.040 Sum_probs=14.4
Q ss_pred eeecccCCCCce-EEEEcCCCCCCCccccc
Q 016404 355 YVCDCCKMRGRF-WAFSCDVCNYDLHPKCV 383 (390)
Q Consensus 355 ~iC~~C~e~g~~-~~~~~~~~~~~~~~~~~ 383 (390)
+.|+.|++++.+ |.|+|.+|||.||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 469999999998 99999999999999997
|
The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A. |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-08 Score=75.60 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=55.0
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
|+++++.|+++||++|..+.|.+.+++++|+ ..+.++.|..|. ...+++.||+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~----~~v~f~~vd~~~-----------------------~~~~~~~~~i 64 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK----GKLLFVVVDADD-----------------------FGRHLEYFGL 64 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC----CeEEEEEEchHh-----------------------hHHHHHHcCC
Confidence 6899999999999999999999999999997 446666665553 3678999999
Q ss_pred c--ccceEEEECC
Q 016404 282 K--GIPALVLIGP 292 (390)
Q Consensus 282 ~--~~P~~~lid~ 292 (390)
. ++|++++++.
T Consensus 65 ~~~~~P~~~~~~~ 77 (103)
T cd02982 65 KEEDLPVIAIINL 77 (103)
T ss_pred ChhhCCEEEEEec
Confidence 9 9999999965
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-08 Score=76.00 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=43.5
Q ss_pred CCcEEEEEEcc--CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 201 AGKTIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 201 ~gk~vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
+.+.+||.|+| +||+ + .|.+.+|+.+|.. ....+.|.-|.++.. ....+.+|+++
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~-aa~~v~lakVd~~d~------------------~~~~~~~L~~~ 73 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSAS-ATDDLLVAEVGIKDY------------------GEKLNMELGER 73 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHh-hcCceEEEEEecccc------------------cchhhHHHHHH
Confidence 45789999999 6665 3 3666666666643 113344444444320 00125789999
Q ss_pred cccc--ccceEEEE
Q 016404 279 FNIK--GIPALVLI 290 (390)
Q Consensus 279 ~~v~--~~P~~~li 290 (390)
|+|+ ++||+++|
T Consensus 74 y~I~~~gyPTl~lF 87 (116)
T cd03007 74 YKLDKESYPVIYLF 87 (116)
T ss_pred hCCCcCCCCEEEEE
Confidence 9999 99999999
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-08 Score=88.71 Aligned_cols=76 Identities=18% Similarity=0.475 Sum_probs=67.9
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
...|+|.|||+||+.++..+|.+.++++++++...+-.+|+.++|++.+ ..++.+|.|.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 6799999999999999999999999999998875556799999999886 7999999999
Q ss_pred CCCeEEEEcCCCcccccc
Q 016404 122 RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~~ 139 (390)
-+||+.++ .+|....+.
T Consensus 72 KyPTlKvf-rnG~~~~rE 88 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKRE 88 (375)
T ss_pred cCceeeee-eccchhhhh
Confidence 99999999 588877543
|
|
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-08 Score=70.16 Aligned_cols=57 Identities=32% Similarity=0.605 Sum_probs=42.1
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
+++||++||++|+...|.|.++. +.++-|+.|. ..+++++|+|.++|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~----------~~~~~vd~~~-----------------------~~~l~~~~~v~~~P 48 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE----------YTYVDVDTDE-----------------------GVELTAKHHIRSLP 48 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh----------heEEeeeCCC-----------------------CHHHHHHcCCceeC
Confidence 68999999999999999986541 1244444333 46889999999999
Q ss_pred eEEEECCCCcEEee
Q 016404 286 ALVLIGPDGKTIST 299 (390)
Q Consensus 286 ~~~lid~~G~v~~~ 299 (390)
|++ +|+.+.+
T Consensus 49 T~~----~g~~~~~ 58 (75)
T PHA02125 49 TLV----NTSTLDR 58 (75)
T ss_pred eEE----CCEEEEE
Confidence 986 4665544
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.5e-08 Score=72.32 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=58.0
Q ss_pred cccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 198 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 198 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.++++.+.+..|+++||++|....+.+.++.+.+. ++.+..+..+. ..++++
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-----~i~~~~vd~~~-----------------------~~e~a~ 59 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-----NIEHEMIDGAL-----------------------FQDEVE 59 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-----CceEEEEEhHh-----------------------CHHHHH
Confidence 35667788999999999999999999999987763 46777777664 367889
Q ss_pred HccccccceEEEECCCCcEEee
Q 016404 278 IFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+|||.++|++++ +|+++.+
T Consensus 60 ~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HcCCccCCEEEE---CCEEEEe
Confidence 999999999974 6888776
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-08 Score=72.67 Aligned_cols=51 Identities=27% Similarity=0.709 Sum_probs=40.2
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCC
Q 016404 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124 (390)
Q Consensus 45 vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 124 (390)
+++.||++||++|+.+.|.|.++. +.++.+|.++. .+++++|++.++|
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~~-----------~~~~~vd~~~~---------------------~~l~~~~~v~~~P 48 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANVE-----------YTYVDVDTDEG---------------------VELTAKHHIRSLP 48 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHHh-----------heEEeeeCCCC---------------------HHHHHHcCCceeC
Confidence 378999999999999999886531 33455665443 6899999999999
Q ss_pred eEE
Q 016404 125 SLI 127 (390)
Q Consensus 125 ~~~ 127 (390)
|++
T Consensus 49 T~~ 51 (75)
T PHA02125 49 TLV 51 (75)
T ss_pred eEE
Confidence 987
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-08 Score=79.60 Aligned_cols=78 Identities=10% Similarity=0.197 Sum_probs=50.7
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHH---HHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLV---QLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+.-+||+|+|+|++.||++|+.+...+. ++.+.++++ +|.|+++.+...
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~-----Fv~V~l~~d~td-------------------- 70 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED-----FIMLNLVHETTD-------------------- 70 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC-----eEEEEEEeccCC--------------------
Confidence 4445567999999999999999999887653 333333333 555555532110
Q ss_pred HHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 112 KKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.... ..+ .++|+++|+|++|+++.+-
T Consensus 71 ~~~~-~~g-~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 71 KNLS-PDG-QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred CCcC-ccC-cccCeEEEECCCCCCcccc
Confidence 0000 122 5799999999999888654
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=4e-08 Score=72.55 Aligned_cols=68 Identities=21% Similarity=0.539 Sum_probs=45.2
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKK 113 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (390)
.+..+||+++|+|+++||++|+.+...+ .++.+.+.++ ++.+.+|.+... ..
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~-----fv~v~vd~~~~~--------------------~~ 66 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN-----FVLVKVDVDDED--------------------PN 66 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC-----SEEEEEETTTHH--------------------HH
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC-----EEEEEEEcCCCC--------------------hh
Confidence 3445799999999999999999998776 3444445544 555555544320 11
Q ss_pred HHHhcCcCCCCeEEEEcC
Q 016404 114 LRIRYRVDRIPSLIPLAS 131 (390)
Q Consensus 114 l~~~~~v~~~P~~~~~d~ 131 (390)
. .+...++|+++++|+
T Consensus 67 ~--~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 67 A--QFDRQGYPTFFFLDP 82 (82)
T ss_dssp H--HHHHCSSSEEEEEET
T ss_pred H--HhCCccCCEEEEeCC
Confidence 1 111166999999985
|
... |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-08 Score=76.83 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=45.5
Q ss_pred cCCCEEEEEEec--CCCh---hhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 40 CGGKTICLFFSA--NWCR---PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 40 ~~gk~vll~F~a--~~C~---~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-+.+.+||.|+| |||+ +|..++|.+.+... +|+...+|++.. ....+..|
T Consensus 16 ~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---------~v~lakVd~~d~----------------~~~~~~~L 70 (116)
T cd03007 16 PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---------DLLVAEVGIKDY----------------GEKLNMEL 70 (116)
T ss_pred hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---------ceEEEEEecccc----------------cchhhHHH
Confidence 357899999999 7777 55555554444332 155666665310 01113789
Q ss_pred HHhcCcC--CCCeEEEEcCCC
Q 016404 115 RIRYRVD--RIPSLIPLASDG 133 (390)
Q Consensus 115 ~~~~~v~--~~P~~~~~d~~G 133 (390)
+++|+|. ++||+.+|. +|
T Consensus 71 ~~~y~I~~~gyPTl~lF~-~g 90 (116)
T cd03007 71 GERYKLDKESYPVIYLFH-GG 90 (116)
T ss_pred HHHhCCCcCCCCEEEEEe-CC
Confidence 9999999 999999996 55
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.7e-09 Score=99.87 Aligned_cols=69 Identities=25% Similarity=0.477 Sum_probs=60.3
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCC
Q 016404 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDR 122 (390)
Q Consensus 43 k~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 122 (390)
+..+|.||++|||+|++++|.++++++.+.....-+.|..|++-.+.+ ..+|+.|+|++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N---------------------~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN---------------------VKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh---------------------hhhHhhcCCCC
Confidence 478899999999999999999999999999886556677776655554 89999999999
Q ss_pred CCeEEEEcCC
Q 016404 123 IPSLIPLASD 132 (390)
Q Consensus 123 ~P~~~~~d~~ 132 (390)
+|++.++.++
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999876
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-08 Score=86.81 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=58.8
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
..++|.||||||.+|+++.|.+.++--.+++ .++-|-.-.+|... -..++..|||+
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkd---ig~PikVGKlDaT~---------------------f~aiAnefgiq 99 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKD---IGLPIKVGKLDATR---------------------FPAIANEFGIQ 99 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhh---cCCceeeccccccc---------------------chhhHhhhccC
Confidence 5899999999999999999999999888876 45555555566543 46899999999
Q ss_pred ccceEEEECCCCcEEeeCcc
Q 016404 283 GIPALVLIGPDGKTISTNGK 302 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~~g~ 302 (390)
++||+.++-.+-.+-+++||
T Consensus 100 GYPTIk~~kgd~a~dYRG~R 119 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAIDYRGGR 119 (468)
T ss_pred CCceEEEecCCeeeecCCCc
Confidence 99999999444444445443
|
|
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.8e-07 Score=72.83 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=83.8
Q ss_pred CCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CHHHHH
Q 016404 183 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD 254 (390)
Q Consensus 183 ~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~ 254 (390)
.-+|++ +.+|+.++++.++||++|+.--|+-|+.-.+.-..|++|+++|+. .+++|++..++. ...++.
T Consensus 14 iydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~---~Gl~ILaFPCNQFg~QEp~~n~Ei~ 90 (171)
T KOG1651|consen 14 IYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD---QGLEILAFPCNQFGNQEPGSNEEIL 90 (171)
T ss_pred eeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh---CCeEEEEeccccccCcCCCCcHHHH
Confidence 446788 999999999999999999999999999999888899999999987 899999999853 235566
Q ss_pred HhhhcCCcccccC------CchHHHHHHHHc----------cccccceEEEECCCCcEEeeCc
Q 016404 255 LNHSIMPWLAIPY------EDRARQDLCRIF----------NIKGIPALVLIGPDGKTISTNG 301 (390)
Q Consensus 255 ~~~~~~~~~~~~~------~~~~~~~l~~~~----------~v~~~P~~~lid~~G~v~~~~g 301 (390)
.++....-..+|+ ..+....+-+-+ +|..-=+-+|+|++|+++.|.+
T Consensus 91 ~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 91 NFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 6665333233333 111111222111 2233346789999999999843
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-07 Score=67.31 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=44.4
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCC
Q 016404 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124 (390)
Q Consensus 45 vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 124 (390)
-+..|+++||++|+...+.|+++.+... + +++..+++|.+ .+++++|++.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~--i~~~~id~~~~-----------------------~~l~~~~~i~~vP 54 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--N--ISAEMIDAAEF-----------------------PDLADEYGVMSVP 54 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--c--eEEEEEEcccC-----------------------HhHHHHcCCcccC
Confidence 3678999999999999999999876432 2 66666665533 4678899999999
Q ss_pred eEEE
Q 016404 125 SLIP 128 (390)
Q Consensus 125 ~~~~ 128 (390)
++++
T Consensus 55 ti~i 58 (67)
T cd02973 55 AIVI 58 (67)
T ss_pred EEEE
Confidence 9865
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-06 Score=87.85 Aligned_cols=182 Identities=14% Similarity=0.161 Sum_probs=109.9
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+..+++++.++.|+.+.|..|......|+++.+ +.++ +++...+.+. +.++++
T Consensus 361 ~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~---i~~~~~~~~~-----------------------~~~~~~ 413 (555)
T TIGR03143 361 FGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEK---LNSEAVNRGE-----------------------EPESET 413 (555)
T ss_pred HHhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCc---EEEEEecccc-----------------------chhhHh
Confidence 456788889999999999999887777777764 4443 6665554332 257889
Q ss_pred hcCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCCeee
Q 016404 117 RYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT 196 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~~~~ 196 (390)
+|++...|++.+++.+|+-. . |..+| -|...+..+.+.+........+.+.+-+- -.
T Consensus 414 ~~~v~~~P~~~i~~~~~~~~---~---i~f~g---~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~--------------~~ 470 (555)
T TIGR03143 414 LPKITKLPTVALLDDDGNYT---G---LKFHG---VPSGHELNSFILALYNAAGPGQPLGEELL--------------EK 470 (555)
T ss_pred hcCCCcCCEEEEEeCCCccc---c---eEEEe---cCccHhHHHHHHHHHHhcCCCCCCCHHHH--------------HH
Confidence 99999999999997565421 0 11111 22222222323322222111111111000 01
Q ss_pred ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
+..+.++..+-.|.+++|++|......++++....+ ++..-.|.... ..+++
T Consensus 471 i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-----~i~~~~i~~~~-----------------------~~~~~ 522 (555)
T TIGR03143 471 IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-----NVEAEMIDVSH-----------------------FPDLK 522 (555)
T ss_pred HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-----CceEEEEECcc-----------------------cHHHH
Confidence 122334455667889999999988877777766642 45544444432 37889
Q ss_pred HHccccccceEEEECCCCcEEee
Q 016404 277 RIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
++|+|.++|++++ ||++++.
T Consensus 523 ~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 523 DEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred HhCCceecCEEEE---CCEEEEe
Confidence 9999999999776 4666654
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=74.49 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=58.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+..++|+++|+|+++||++|+.+.... .++.+.++++ .|++.+|.+.. ..
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~-----~v~~~~d~~~~-------------------e~ 65 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN-----FIFWQCDIDSS-------------------EG 65 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC-----EEEEEecCCCc-------------------cH
Confidence 445556799999999999999999887633 3444445443 55555554321 12
Q ss_pred HHHHHhcCcCCCCeEEEEcC-CCccccc
Q 016404 112 KKLRIRYRVDRIPSLIPLAS-DGTLIEE 138 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~-~G~i~~~ 138 (390)
..++..|++.++|+++++++ +|+++.+
T Consensus 66 ~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 66 QRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 67889999999999999999 7887754
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=70.71 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=56.7
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+.++.+++-+..|+++||++|....+.+.++.+.+.+ +++..+++|.. .++++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~----i~~~~vd~~~~-----------------------~e~a~ 59 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN----IEHEMIDGALF-----------------------QDEVE 59 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC----ceEEEEEhHhC-----------------------HHHHH
Confidence 4467888999999999999999999999999876532 66777766522 57889
Q ss_pred hcCcCCCCeEEEEcCCCcccc
Q 016404 117 RYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~ 137 (390)
+|+|.++|++++ +|+.+.
T Consensus 60 ~~~V~~vPt~vi---dG~~~~ 77 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFG 77 (89)
T ss_pred HcCCccCCEEEE---CCEEEE
Confidence 999999999975 576654
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=70.06 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=91.7
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+++|+|++ +.+.+.+++.++.||..++..+. -.-+-|......+++.+.++ .+..|+.||.|- +-+..++
T Consensus 20 vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~-----~~~~Vl~IS~DL-PFAq~Rf 93 (158)
T COG2077 20 VGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL-----GNTVVLCISMDL-PFAQKRF 93 (158)
T ss_pred cCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc-----CCcEEEEEeCCC-hhHHhhh
Confidence 5899999999 99999999999999877666664 45566999999999988887 457899999884 4566777
Q ss_pred hhcCCcccccCCch-HHHHHHHHccc--cccc-------eEEEECCCCcEEeeC
Q 016404 257 HSIMPWLAIPYEDR-ARQDLCRIFNI--KGIP-------ALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~l~~~~~v--~~~P-------~~~lid~~G~v~~~~ 300 (390)
+...+.-++....| .+..+.+.||+ ...| +++++|.+|+|++..
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence 87777666655555 45678899996 3344 689999999999984
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-07 Score=79.97 Aligned_cols=82 Identities=26% Similarity=0.350 Sum_probs=64.9
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
+.+++-|++|+.+.|++|..+.|.|..+.++|. +.|+.|++|... ...+|.... +..+++++
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg------~~v~~vs~DG~~-----------~~~fp~~~~-~~g~~~~l 179 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG------FSVIPVSLDGRP-----------IPSFPNPRP-DPGQAKRL 179 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC------CEEEEEecCCCC-----------CcCCCCCCC-CHHHHHHc
Confidence 345788999999999999999999999999975 789999999642 122332221 57788999
Q ss_pred cccccceEEEECCCCcEEee
Q 016404 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
||..+|+++|+++++.....
T Consensus 180 ~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 180 GVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred CCCcCCEEEEEECCCCeEEE
Confidence 99999999999998854444
|
|
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.5e-07 Score=70.46 Aligned_cols=69 Identities=16% Similarity=0.351 Sum_probs=50.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.+|.++|+|+++||++|..+.... .++.+.+. .++-++.+.+.... ...+++
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~----~~fv~~~~dv~~~e---------------------g~~l~~ 80 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR----ENFIFWQVDVDTSE---------------------GQRVSQ 80 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH----cCEEEEEecCCChh---------------------HHHHHH
Confidence 468999999999999999987643 33444443 33344444433221 367899
Q ss_pred HccccccceEEEECCCC
Q 016404 278 IFNIKGIPALVLIGPDG 294 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G 294 (390)
.|++.++|+++++|++|
T Consensus 81 ~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 81 FYKLDSFPYVAIVDPRT 97 (122)
T ss_pred hcCcCCCCEEEEEecCC
Confidence 99999999999999997
|
|
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=72.22 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=83.7
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHHH
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFK 97 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~~ 97 (390)
.++.+.+|+ ++|++++||++||.-.|+-|+.-. .-..|+.||++|+++| ++|++..++. +.+++.+|+.
T Consensus 8 ~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~fC~ 84 (162)
T COG0386 8 FSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKFCQ 84 (162)
T ss_pred ceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHHHH
Confidence 568899999 999999999999999999999765 4557999999999999 9999999973 5668888988
Q ss_pred hCCCcceec------Chh----HHHHHHHhcC-------cCCCCeEEEEcCCCccccccc
Q 016404 98 CMPWLAVPF------DET----LHKKLRIRYR-------VDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 98 ~~~~~~~~~------~~~----~~~~l~~~~~-------v~~~P~~~~~d~~G~i~~~~~ 140 (390)
...-..+|. ... ..+-|..+.. |..-=+-+++|++|+++.|..
T Consensus 85 ~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 85 LNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred hccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 665555555 111 1122222221 222337789999999987654
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.9e-07 Score=73.05 Aligned_cols=72 Identities=19% Similarity=0.378 Sum_probs=45.8
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH-
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI- 278 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 278 (390)
..++..++.|..+|||.|+...|.|.++++.. .++++-.+..|.+ .++...
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-----p~i~~~~i~rd~~-----------------------~el~~~~ 90 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEAN-----PNIEVRIILRDEN-----------------------KELMDQY 90 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH------TTEEEEEE-HHHH-----------------------HHHTTTT
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-----CCCeEEEEEecCC-----------------------hhHHHHH
Confidence 34467888899999999999999999999875 3566666666643 233333
Q ss_pred --ccccccceEEEECCCCcEEee
Q 016404 279 --FNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 279 --~~v~~~P~~~lid~~G~v~~~ 299 (390)
.|..++|+++++|.+|+++.+
T Consensus 91 lt~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 91 LTNGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp TT-SS--SSEEEEE-TT--EEEE
T ss_pred HhCCCeecCEEEEEcCCCCEeEE
Confidence 468899999999999999988
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=5e-07 Score=79.16 Aligned_cols=85 Identities=22% Similarity=0.245 Sum_probs=67.6
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-.+..+.+++-|++|+.+.|++|+.+.|.|..+.++++ ++|+.|++|.... ..+|-.. .+..+
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~-----------~~fp~~~-~~~g~ 175 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPI-----------PSFPNPR-PDPGQ 175 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCC-----------cCCCCCC-CCHHH
Confidence 45666778999999999999999999999999999983 8899999995432 1222211 14678
Q ss_pred HHhcCcCCCCeEEEEcCCCccc
Q 016404 115 RIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
++++|+..+|+++++++++...
T Consensus 176 ~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 176 AKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred HHHcCCCcCCEEEEEECCCCeE
Confidence 8999999999999999887443
|
|
| >PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-07 Score=55.23 Aligned_cols=29 Identities=28% Similarity=0.890 Sum_probs=27.0
Q ss_pred eeecccCCCCceE-EEEcCCCCCCCccccc
Q 016404 355 YVCDCCKMRGRFW-AFSCDVCNYDLHPKCV 383 (390)
Q Consensus 355 ~iC~~C~e~g~~~-~~~~~~~~~~~~~~~~ 383 (390)
+.|+.|.+...+. .|+|++|+|.||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 4699999999888 9999999999999997
|
The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins. |
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=7e-07 Score=65.85 Aligned_cols=64 Identities=33% Similarity=0.766 Sum_probs=42.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
+||+++|+|++.||++|+.+...+ .++.+.+. .++..+.|..+... ...
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~----~~fv~v~vd~~~~~----------------------~~~-- 67 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN----KNFVLVKVDVDDED----------------------PNA-- 67 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH----HCSEEEEEETTTHH----------------------HHH--
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH----CCEEEEEEEcCCCC----------------------hhH--
Confidence 469999999999999999998766 34444344 34455555554321 111
Q ss_pred HccccccceEEEECC
Q 016404 278 IFNIKGIPALVLIGP 292 (390)
Q Consensus 278 ~~~v~~~P~~~lid~ 292 (390)
.+...++|+++++||
T Consensus 68 ~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 68 QFDRQGYPTFFFLDP 82 (82)
T ss_dssp HHHHCSSSEEEEEET
T ss_pred HhCCccCCEEEEeCC
Confidence 111266999999985
|
... |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=69.35 Aligned_cols=75 Identities=15% Similarity=0.249 Sum_probs=55.0
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+.-++|+++|+|+++||++|..+...+ .++.+.++++ +|++.+|.+.. ..
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~-----fv~~~~dv~~~-------------------eg 75 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIREN-----FIFWQVDVDTS-------------------EG 75 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcC-----EEEEEecCCCh-------------------hH
Confidence 555566799999999999999999888643 3344444433 55555553321 12
Q ss_pred HHHHHhcCcCCCCeEEEEcCCC
Q 016404 112 KKLRIRYRVDRIPSLIPLASDG 133 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~~G 133 (390)
..++++|+++++|++++++++|
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCC
Confidence 6899999999999999999887
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-06 Score=77.18 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=77.5
Q ss_pred ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 199 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 199 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
.+++++-|++||.+.|++|..+.|.|+.+.++|. +.|+.||+|... ...+|... .+..++++
T Consensus 147 ~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg------i~v~~VS~DG~~-----------~p~fp~~~-~d~gqa~~ 208 (256)
T TIGR02739 147 QLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG------ISVIPISVDGTL-----------IPGLPNSR-SDSGQAQH 208 (256)
T ss_pred HHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCcc-CChHHHHh
Confidence 3445778999999999999999999999999975 789999999742 12333322 24678899
Q ss_pred ccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcC
Q 016404 279 FNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 332 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 332 (390)
+||..+|+++|++++.+....- .+|... .++|.+.+...+.
T Consensus 209 l~v~~~Pal~Lv~~~t~~~~pv------~~G~iS-------~deL~~Ri~~v~~ 249 (256)
T TIGR02739 209 LGVKYFPALYLVNPKSQKMSPL------AYGFIS-------QDELKERILNVLT 249 (256)
T ss_pred cCCccCceEEEEECCCCcEEEE------eeccCC-------HHHHHHHHHHHHh
Confidence 9999999999999996554443 366665 6677666665444
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=71.00 Aligned_cols=108 Identities=23% Similarity=0.276 Sum_probs=85.7
Q ss_pred eecCCCc-cccCccCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh--HHHHHHHhCC---
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKCMP--- 100 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a-~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~~~~~~~~--- 100 (390)
+++..-+ ++|+++.||+|+++||. .+--.|..+.-.+...+++|++.+ -+|+++++|.... +|.+.-++.+
T Consensus 18 VVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~fshlAW~ntprk~gGlg 95 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVFSHLAWINTPRKQGGLG 95 (196)
T ss_pred EEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchhhhhhHhcCchhhCCcC
Confidence 4554445 99999999999999994 444578888999999999999887 8899999996432 5555555544
Q ss_pred CcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIE 137 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~ 137 (390)
-..+|...|.+.++++.||+- .+-.++++|++|.+..
T Consensus 96 ~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~ 138 (196)
T KOG0852|consen 96 PLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQ 138 (196)
T ss_pred ccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEE
Confidence 356899999999999999983 4568999999998765
|
|
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.4e-06 Score=64.96 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=55.3
Q ss_pred ceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC
Q 016404 185 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR 248 (390)
Q Consensus 185 ~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~ 248 (390)
+|++ +++|+.++|+.++||++||.-.|+-|+.-. ....|++|+++|++ .+++|+++.++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~---~gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD---KGLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG---GTEEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhc---CCeEEEeeehHH
Confidence 4677 999999999999999999999999999988 88899999999987 789999999864
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=75.75 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=74.4
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
+.+++-|++||.+.|++|..+.|.|+.+.++|. +.|+.||+|... ...+|... .+...++.+
T Consensus 141 la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg------~~v~~VS~DG~~-----------~p~fp~~~-~d~gqa~~l 202 (248)
T PRK13703 141 LAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG------LSVIPVSVDGVI-----------NPLLPDSR-TDQGQAQRL 202 (248)
T ss_pred HHhcceEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCCc-cChhHHHhc
Confidence 344678899999999999999999999999975 689999999742 12333322 234566899
Q ss_pred cccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhc
Q 016404 280 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 331 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 331 (390)
||..+|+++|++++.+-...- .+|... ..+|.+.+...+
T Consensus 203 ~v~~~PAl~Lv~~~t~~~~pv------~~G~iS-------~deL~~Ri~~v~ 241 (248)
T PRK13703 203 GVKYFPALMLVDPKSGSVRPL------SYGFIT-------QDDLAKRFLNVS 241 (248)
T ss_pred CCcccceEEEEECCCCcEEEE------eeccCC-------HHHHHHHHHHHH
Confidence 999999999999986544332 366665 666766665543
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-06 Score=77.08 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=67.7
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-.+..+.+++-|++||.+.|++|+.+.|.++.+.++++ ++|+.||+|.... ..+|-. ..+..+
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~-----------p~fp~~-~~d~gq 205 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLI-----------PGLPNS-RSDSGQ 205 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCCCc-cCChHH
Confidence 44666778899999999999999999999999999875 7899999996532 223321 124678
Q ss_pred HHhcCcCCCCeEEEEcCCCccc
Q 016404 115 RIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
++++|++.+|++++++++....
T Consensus 206 a~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 206 AQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HHhcCCccCceEEEEECCCCcE
Confidence 8999999999999999885543
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-06 Score=67.99 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=78.9
Q ss_pred cceeecCCCc-cccCccCCC-EEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk-~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
..+|.|.+|+ ++|.++.|+ +|+++|| +..-|.|.++.=.+..-|++++..+ .+|++++.|... +-++|..+..
T Consensus 71 D~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s~-sqKaF~sKqn- 146 (211)
T KOG0855|consen 71 DFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDSA-SQKAFASKQN- 146 (211)
T ss_pred CcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCchH-HHHHhhhhcc-
Confidence 4459999999 999999774 8889888 4445778888888999999999877 889999998543 4566666544
Q ss_pred cceecChhHHHHHHHhcCcCCCC-------eEEEEcCCC
Q 016404 102 LAVPFDETLHKKLRIRYRVDRIP-------SLIPLASDG 133 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~~P-------~~~~~d~~G 133 (390)
+.+.+..|..+++...+|+...| +.++++.+|
T Consensus 147 lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 147 LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 33444677778999999987544 556665443
|
|
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.5e-06 Score=62.75 Aligned_cols=59 Identities=29% Similarity=0.397 Sum_probs=54.4
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~ 87 (390)
.++.+++|+ ++|+.++||++||.-.|+-|+.-. ....|++++++|+++| ++|++..++.
T Consensus 4 f~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq 63 (108)
T PF00255_consen 4 FSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ 63 (108)
T ss_dssp SEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred eeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence 458899999 999999999999999999999888 7889999999999888 9999999874
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.7e-06 Score=71.96 Aligned_cols=135 Identities=16% Similarity=0.249 Sum_probs=90.2
Q ss_pred HHhhccCCceEE-eCCCCe-eeecccC--CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016404 177 QLLAIEGRDYVL-SRDHRK-ITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~g~~-~~l~~~~--gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
..+|..+||..+ ..+|++ .++-++. ++|+||+|.+-.||+=+.-++.++++.++|++ -.+++.|.+.+.+
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d----~adFl~VYI~EAHps 148 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD----VADFLIVYIEEAHPS 148 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh----hhheehhhHhhhCcC
Confidence 346999999998 999998 9999984 59999999999999999999999999999983 3345555442110
Q ss_pred -------------------H--HHHHhhhcCCcccccCCch-HHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhc
Q 016404 251 -------------------K--EFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLY 308 (390)
Q Consensus 251 -------------------~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~ 308 (390)
+ ...+.+.... ...|+..| -++...+.||...- .+|+| .+|+|++++| .
T Consensus 149 DgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg------~ 219 (237)
T PF00837_consen 149 DGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKGG------P 219 (237)
T ss_pred CCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeCC------C
Confidence 1 1112222111 34555433 45667777775432 35666 6999999975 4
Q ss_pred CccCCCCChhhHHHHHHHHHH
Q 016404 309 GAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 309 g~~~~p~~~~~~~~l~~~~~~ 329 (390)
|.-.| . ++++++.+++
T Consensus 220 GP~~y--~---~~e~r~~L~~ 235 (237)
T PF00837_consen 220 GPFGY--S---PEELREWLEK 235 (237)
T ss_pred CCCcC--C---HHHHHHHHHh
Confidence 44333 2 5566665654
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=62.98 Aligned_cols=68 Identities=41% Similarity=0.703 Sum_probs=52.9
Q ss_pred ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
....+++++++.||++||++|+...|.+.++.+++. ..+.++.+..... ...+.
T Consensus 27 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~i~~~~~----------------------~~~~~ 80 (127)
T COG0526 27 LSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYG----GDVEVVAVNVDDE----------------------NPDLA 80 (127)
T ss_pred hhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhc----CCcEEEEEECCCC----------------------ChHHH
Confidence 333347899999999999999999999999999986 2567777777511 35666
Q ss_pred HHcc--ccccceEEEE
Q 016404 277 RIFN--IKGIPALVLI 290 (390)
Q Consensus 277 ~~~~--v~~~P~~~li 290 (390)
..|+ +..+|+++++
T Consensus 81 ~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 81 AEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHhhhhccCCeEEEE
Confidence 7777 8888988755
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=3e-06 Score=75.16 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=66.3
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-.+..+.+++-|++||.+.|++|..+.|.|+.+.++++ ++|+.||+|.... ..+|-. ..+...
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG~~~-----------p~fp~~-~~d~gq 198 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDGVIN-----------PLLPDS-RTDQGQ 198 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCCCC-ccChhH
Confidence 44666778899999999999999999999999999875 7899999996432 223321 123456
Q ss_pred HHhcCcCCCCeEEEEcCCCccc
Q 016404 115 RIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
++++|+..+|++++++++....
T Consensus 199 a~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 199 AQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HHhcCCcccceEEEEECCCCcE
Confidence 6899999999999999876433
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.9e-06 Score=64.09 Aligned_cols=70 Identities=31% Similarity=0.603 Sum_probs=54.0
Q ss_pred ccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH
Q 016404 36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 36 ~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
......++++++.||++||++|+.++|.+.++.+++... +.++.++... . ...+.
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~-~---------------------~~~~~ 80 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDD-E---------------------NPDLA 80 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCC-C---------------------ChHHH
Confidence 344444899999999999999999999999999998762 5677777651 1 14566
Q ss_pred HhcC--cCCCCeEEEEc
Q 016404 116 IRYR--VDRIPSLIPLA 130 (390)
Q Consensus 116 ~~~~--v~~~P~~~~~d 130 (390)
..|+ +..+|+++++.
T Consensus 81 ~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 81 AEFGVAVRSIPTLLLFK 97 (127)
T ss_pred HHHhhhhccCCeEEEEe
Confidence 6677 88889988664
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.2e-06 Score=55.80 Aligned_cols=63 Identities=29% Similarity=0.590 Sum_probs=48.7
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.||++||++|++..+.+.++ ++.. .++.++.++++..... ......+++..+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~P 55 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN---KGVKFEAVDVDEDPAL--------------------EKELKRYGVGGVP 55 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC---CCcEEEEEEcCCChHH--------------------hhHHHhCCCcccc
Confidence 4789999999999999999998 3332 7889999998865311 1113578899999
Q ss_pred eEEEECCC
Q 016404 286 ALVLIGPD 293 (390)
Q Consensus 286 ~~~lid~~ 293 (390)
++++++++
T Consensus 56 ~~~~~~~~ 63 (69)
T cd01659 56 TLVVFGPG 63 (69)
T ss_pred EEEEEeCC
Confidence 99999766
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=65.57 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=81.3
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
..+..+.+|+ |+|+.++||++||.--|+.|+.=...-..|++++++|++.| ++|++..++. +.++...++
T Consensus 16 df~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCNQFg~QEp~~n~Ei~~f~ 93 (171)
T KOG1651|consen 16 DFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCNQFGNQEPGSNEEILNFV 93 (171)
T ss_pred eeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccccccCcCCCCcHHHHHHH
Confidence 3668899999 99999999999999999999988877779999999999999 9999999863 344566677
Q ss_pred HhCCCcceec------ChhHHHHHHHhc----------CcCCCCeEEEEcCCCccccccc
Q 016404 97 KCMPWLAVPF------DETLHKKLRIRY----------RVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 97 ~~~~~~~~~~------~~~~~~~l~~~~----------~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
...+-..+|+ ..+....+.+.+ .|..-=+-+++|++|.++.|..
T Consensus 94 ~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 94 KVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 6333222232 111112222222 1222336789999999886543
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=63.38 Aligned_cols=87 Identities=18% Similarity=0.385 Sum_probs=62.9
Q ss_pred ccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec----Ch
Q 016404 36 PLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF----DE 108 (390)
Q Consensus 36 ~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~----~~ 108 (390)
.+....||..++.|-.+.|++|.++...+ .++.+-++.+ +.++.+.+..+.. ..+-. -.
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skp-----------v~f~~g~kee~ 101 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKP-----------VLFKVGDKEEK 101 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcc-----------eEeecCceeee
Confidence 34445799999999999999998877654 4566666655 6777777654332 11111 11
Q ss_pred hHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 109 TLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 109 ~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
.+.+++++.|+++++|+++++|.+|+.+
T Consensus 102 ~s~~ELa~kf~vrstPtfvFfdk~Gk~I 129 (182)
T COG2143 102 MSTEELAQKFAVRSTPTFVFFDKTGKTI 129 (182)
T ss_pred ecHHHHHHHhccccCceEEEEcCCCCEE
Confidence 2457999999999999999999998766
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.5e-06 Score=82.00 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=59.7
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHH-HHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQLV-QLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l~-~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
+.+.++|+|+|+|||+||-.|+.+.+..- +...+.+-.+ ++....|-+.+ +..+.++-
T Consensus 469 la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~----~vlLqaDvT~~-----------------~p~~~~lL 527 (569)
T COG4232 469 LAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD----VVLLQADVTAN-----------------DPAITALL 527 (569)
T ss_pred HHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC----eEEEEeeecCC-----------------CHHHHHHH
Confidence 34445679999999999999999888554 4444444444 77777775543 34467888
Q ss_pred HhcCcCCCCeEEEEcCCCccc
Q 016404 116 IRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 116 ~~~~v~~~P~~~~~d~~G~i~ 136 (390)
++|++-+.|++++++++|+..
T Consensus 528 k~~~~~G~P~~~ff~~~g~e~ 548 (569)
T COG4232 528 KRLGVFGVPTYLFFGPQGSEP 548 (569)
T ss_pred HHcCCCCCCEEEEECCCCCcC
Confidence 999999999999999888654
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-06 Score=68.30 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=45.9
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+.....+..++.|..+|||.|....|.|.++++... + +++-.+..|.+. ++..
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~--i~~~~i~rd~~~-----------------------el~~ 88 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP--N--IEVRIILRDENK-----------------------ELMD 88 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--T--EEEEEE-HHHHH-----------------------HHTT
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--C--CeEEEEEecCCh-----------------------hHHH
Confidence 344567788999999999999999999999999743 2 778888766333 2222
Q ss_pred h---cCcCCCCeEEEEcCCCcccc
Q 016404 117 R---YRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 117 ~---~~v~~~P~~~~~d~~G~i~~ 137 (390)
+ .|...+|+++++|.+|+.+.
T Consensus 89 ~~lt~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 89 QYLTNGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp TTTT-SS--SSEEEEE-TT--EEE
T ss_pred HHHhCCCeecCEEEEEcCCCCEeE
Confidence 2 46789999999998887663
|
|
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-06 Score=82.12 Aligned_cols=69 Identities=28% Similarity=0.556 Sum_probs=59.2
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
+..+|.||++||++|+++.|.+.++++.... +..-+.|..|.+-.+. +..+++.|+|.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~-W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~ 115 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEK-WRPVVRVAAVDCADEE---------------------NVKLCREFSVS 115 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhc-ccceeEEEEeeccchh---------------------hhhhHhhcCCC
Confidence 5788999999999999999999999998875 6666777777665442 78999999999
Q ss_pred ccceEEEECCC
Q 016404 283 GIPALVLIGPD 293 (390)
Q Consensus 283 ~~P~~~lid~~ 293 (390)
++|++..+.++
T Consensus 116 ~~Ptlryf~~~ 126 (606)
T KOG1731|consen 116 GYPTLRYFPPD 126 (606)
T ss_pred CCceeeecCCc
Confidence 99999999776
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.9e-05 Score=64.13 Aligned_cols=80 Identities=26% Similarity=0.421 Sum_probs=43.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHH-H--HHHHHHhhcccCCceEEEEEecCCCH-HHHHHhhhcCCcccccCCchHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQ-L--IEVYNELKTTANHCFEVVLVSTDRDH-KEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
.+|+++|.++.+||..|+.+... + .++++.+.+ .+|.|.+|.+. ..+...+. ....
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~------~FI~VkvDree~Pdid~~y~--------------~~~~ 95 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR------NFIPVKVDREERPDIDKIYM--------------NAVQ 95 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH------H-EEEEEETTT-HHHHHHHH--------------HHHH
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC------CEEEEEeccccCccHHHHHH--------------HHHH
Confidence 46999999999999999988742 1 233333332 37888888764 22222211 1111
Q ss_pred HHccccccceEEEECCCCcEEeeC
Q 016404 277 RIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
...|..++|++++++|+|+.++..
T Consensus 96 ~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 96 AMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp HHHS---SSEEEEE-TTS-EEEEE
T ss_pred HhcCCCCCCceEEECCCCCeeeee
Confidence 122778999999999999999863
|
; PDB: 3IRA_A. |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-05 Score=64.10 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=94.1
Q ss_pred hhccCCceEEeCCCCeeeecccCCcEEEEEEc--cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC--CHHHHH
Q 016404 179 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFG--AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l~~~g~~~~l~~~~gk~vlv~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~~ 254 (390)
+|+.+|+|..+..-..+.+.++.|.-+.|.|. |..-|.|..++..+..+.-+|.+ .+++.+++|+|. +...|.
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~K---RnvKlialS~d~vesH~~Wi 84 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDK---RNVKLIALSVDDVESHKDWI 84 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhh---cCceEEEeehhhHHHHHHHH
Confidence 68999999998888889999999987777787 55778899999999999999987 899999999986 345555
Q ss_pred Hhhh----cCC-cccccCCchHHHHHHHHcccc------------ccceEEEECCCCcEEee
Q 016404 255 LNHS----IMP-WLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 255 ~~~~----~~~-~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 299 (390)
+-++ ..+ -+.+|...|.+++++-.|+.- ....+++||++.++.-.
T Consensus 85 ~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs 146 (224)
T KOG0854|consen 85 KDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLS 146 (224)
T ss_pred HHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEE
Confidence 4443 222 366777888899999888751 24568999999998765
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-05 Score=54.24 Aligned_cols=63 Identities=29% Similarity=0.591 Sum_probs=47.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.||++||++|+...+.+.++ .....+ +.++.++++...+. ......+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKG--VKFEAVDVDEDPAL--------------------EKELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCC--cEEEEEEcCCChHH--------------------hhHHHhCCCccccE
Confidence 5789999999999999999998 333333 88888888765431 11136789999999
Q ss_pred EEEEcCC
Q 016404 126 LIPLASD 132 (390)
Q Consensus 126 ~~~~d~~ 132 (390)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999754
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2e-05 Score=76.86 Aligned_cols=75 Identities=25% Similarity=0.460 Sum_probs=52.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHH-HHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLI-EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
++|+|+|+|||.||-.|+...+..- +.....+- .+ ++.+..|-+. .+..+.++.++|
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~---~~--~vlLqaDvT~-----------------~~p~~~~lLk~~ 530 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL---QD--VVLLQADVTA-----------------NDPAITALLKRL 530 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc---CC--eEEEEeeecC-----------------CCHHHHHHHHHc
Confidence 3469999999999999999887543 22222221 33 5555555332 122367888999
Q ss_pred cccccceEEEECCCCcEE
Q 016404 280 NIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~ 297 (390)
|+-+.|++++++++|+-.
T Consensus 531 ~~~G~P~~~ff~~~g~e~ 548 (569)
T COG4232 531 GVFGVPTYLFFGPQGSEP 548 (569)
T ss_pred CCCCCCEEEEECCCCCcC
Confidence 999999999999888743
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00011 Score=58.92 Aligned_cols=88 Identities=22% Similarity=0.354 Sum_probs=60.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.+|+.++.|-...|++|.++-..+ .++.+.+. +++.++.+.+...... .-..+. -...-..+++++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk----~hf~~~~l~i~~skpv-~f~~g~------kee~~s~~ELa~ 109 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK----EHFSAYYLNISYSKPV-LFKVGD------KEEKMSTEELAQ 109 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh----hCeEEEEEEeccCcce-EeecCc------eeeeecHHHHHH
Confidence 469999999999999999987765 44555554 5667777766432200 000000 000113579999
Q ss_pred HccccccceEEEECCCCcEEee
Q 016404 278 IFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.|+|+++|+++++|.+|+.+..
T Consensus 110 kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 110 KFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HhccccCceEEEEcCCCCEEEe
Confidence 9999999999999999998766
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.8e-05 Score=65.34 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=47.6
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+..++|+|+|.++.+||..|..+...- .++++.++++ +|.|.+|.++.
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree~--------------------- 83 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREER--------------------- 83 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT----------------------
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEeccccC---------------------
Confidence 555556799999999999999998777521 3455555554 88888887663
Q ss_pred HHHHHhc--------CcCCCCeEEEEcCCCccccc
Q 016404 112 KKLRIRY--------RVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 112 ~~l~~~~--------~v~~~P~~~~~d~~G~i~~~ 138 (390)
..+...| |..+.|+.+++.++|+.+..
T Consensus 84 Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 84 PDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeee
Confidence 2233333 77899999999999998753
|
; PDB: 3IRA_A. |
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00014 Score=58.04 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=61.4
Q ss_pred EEEEEcc--CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 205 IGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 205 vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
.+|.|-+ .-++.+....-.|.++.++|.+ .++.++.|.+|. +..++.+|||.
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~---~~v~~akVDiD~-----------------------~~~LA~~fgV~ 90 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPD---YTWQVAIADLEQ-----------------------SEAIGDRFGVF 90 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcC---CceEEEEEECCC-----------------------CHHHHHHcCCc
Confidence 4444442 2445577777789999999963 458888888886 47899999999
Q ss_pred ccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHh
Q 016404 283 GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 330 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 330 (390)
++||++|| ++|+++.+ ..|... -.++.+.+++.
T Consensus 91 siPTLl~F-kdGk~v~~-------i~G~~~-------k~~l~~~I~~~ 123 (132)
T PRK11509 91 RFPATLVF-TGGNYRGV-------LNGIHP-------WAELINLMRGL 123 (132)
T ss_pred cCCEEEEE-ECCEEEEE-------EeCcCC-------HHHHHHHHHHH
Confidence 99999999 77777766 567665 45555555543
|
|
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2e-05 Score=66.66 Aligned_cols=92 Identities=25% Similarity=0.485 Sum_probs=69.9
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
.+.++|.|++.|.+.|+...|.+.++..+|.. ..+.+-.|.+.. -.+.+.+|+|
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~---~~lkFGkvDiGr-----------------------fpd~a~kfri 197 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNN---NLLKFGKVDIGR-----------------------FPDVAAKFRI 197 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCC---CCCcccceeecc-----------------------CcChHHheee
Confidence 36899999999999999999999999999975 666776666654 2456677776
Q ss_pred ------cccceEEEECCCCcEEeeCcchhhhhcC-ccCCCCChhhHHH
Q 016404 282 ------KGIPALVLIGPDGKTISTNGKEMISLYG-AKAFPFTESRIAE 322 (390)
Q Consensus 282 ------~~~P~~~lid~~G~v~~~~g~~~~~~~g-~~~~p~~~~~~~~ 322 (390)
+.+||++++ .+|+-+.+ +..+...| +..++++++-+-.
T Consensus 198 s~s~~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSeenv~~ 242 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSEENVCQ 242 (265)
T ss_pred ccCcccccCCeEEEE-ccchhhhc--CccccccCCcccccccHHHHHH
Confidence 468999999 67776655 44444443 6788888875544
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0009 Score=67.17 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=48.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+..-+..|..++||+|......++++.... .++..-.| |... ..++++.|+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-----~~i~~~~i--d~~~---------------------~~~~~~~~~ 166 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLN-----PNITHTMI--DGAL---------------------FQDEVEARN 166 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-----CCceEEEE--Echh---------------------CHhHHHhcC
Confidence 3455688899999999998888888876653 33444443 5432 578999999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|++++ +|+.++.
T Consensus 167 v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 167 IMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CcccCEEEE---CCcEEEe
Confidence 999999975 4454433
|
|
| >cd02340 ZZ_NBR1_like Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.1e-06 Score=51.54 Aligned_cols=30 Identities=33% Similarity=0.712 Sum_probs=27.2
Q ss_pred eecccCCCCceEEEEcCCC-CCCCccccccc
Q 016404 356 VCDCCKMRGRFWAFSCDVC-NYDLHPKCVEG 385 (390)
Q Consensus 356 iC~~C~e~g~~~~~~~~~~-~~~~~~~~~~~ 385 (390)
.|++|++...|-+|+|.+| ||||+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 5999999999999999999 69999999653
|
Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain. |
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=56.54 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=49.4
Q ss_pred CCcEEEEEEccC----CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 201 AGKTIGLYFGAH----WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 201 ~gk~vlv~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
.+|.++|+++++ ||.+|+..+.. .++.+-+. .++-+++.++.... ..+++
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln----~~fv~w~~dv~~~e---------------------g~~la 69 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN----TRMLFWACSVAKPE---------------------GYRVS 69 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH----cCEEEEEEecCChH---------------------HHHHH
Confidence 469999999999 88899876532 33333333 34444444444322 36789
Q ss_pred HHccccccceEEEE---CCCCcEEee
Q 016404 277 RIFNIKGIPALVLI---GPDGKTIST 299 (390)
Q Consensus 277 ~~~~v~~~P~~~li---d~~G~v~~~ 299 (390)
..+++.++|++.++ +.+.+++.+
T Consensus 70 ~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 70 QALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred HHhCCCCCCEEEEEEecCCceEEEEE
Confidence 99999999999999 555556666
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.9e-05 Score=52.60 Aligned_cols=56 Identities=18% Similarity=0.437 Sum_probs=41.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|+++||++|+...+.|.+ .+ +++..++++.+... ...+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 567899999999998877654 23 66777777755431 145677889999999
Q ss_pred EEEE
Q 016404 126 LIPL 129 (390)
Q Consensus 126 ~~~~ 129 (390)
+++.
T Consensus 54 ~~~~ 57 (74)
T TIGR02196 54 IVIG 57 (74)
T ss_pred EEEC
Confidence 8873
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.2e-05 Score=55.43 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=41.9
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.|+++|||+|+...+.|.++. +. ..+.++-|+.+.+..+. ...+.+.+++.++|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----~~~~~~~v~~~~~~~~~------------------~~~l~~~~g~~~vP 56 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK----PAYEVVELDQLSNGSEI------------------QDYLEEITGQRTVP 56 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC----CCCEEEEeeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence 46799999999999999998875 22 33667777766443221 13466778999999
Q ss_pred eEE
Q 016404 286 ALV 288 (390)
Q Consensus 286 ~~~ 288 (390)
+++
T Consensus 57 ~v~ 59 (84)
T TIGR02180 57 NIF 59 (84)
T ss_pred eEE
Confidence 974
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0017 Score=65.05 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=47.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.++.-+..|..+.||+|......++++....+ ++..- .+|... ..+++++|+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-----~i~~~--~id~~~---------------------~~~~~~~~~ 167 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP-----NISHT--MIDGAL---------------------FQDEVEALG 167 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-----CceEE--EEEchh---------------------CHHHHHhcC
Confidence 34566888999999999988777777766643 33333 344432 478899999
Q ss_pred ccccceEEEECCCCcEEe
Q 016404 281 IKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~ 298 (390)
+.++|++++ +|+.+.
T Consensus 168 v~~VP~~~i---~~~~~~ 182 (515)
T TIGR03140 168 IQGVPAVFL---NGEEFH 182 (515)
T ss_pred CcccCEEEE---CCcEEE
Confidence 999999876 344443
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00021 Score=51.58 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=38.9
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH-Hcccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IFNIKGI 284 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~ 284 (390)
+..||++||++|++..+.|.++. +.+-.++++.+... ...+.+ .+++.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~----------~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~v 52 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG----------AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTV 52 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC----------CceEEEeCcCCHhH-------------------HHHHHHHhCCCcee
Confidence 56799999999999988876542 23334556544211 112222 2478999
Q ss_pred ceEEEECCCCcEEee
Q 016404 285 PALVLIGPDGKTIST 299 (390)
Q Consensus 285 P~~~lid~~G~v~~~ 299 (390)
|++ ++ .+|+++..
T Consensus 53 P~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 53 PTV-KF-ADGSFLTN 65 (77)
T ss_pred CEE-EE-CCCeEecC
Confidence 986 45 36666544
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.71 E-value=8e-05 Score=58.35 Aligned_cols=77 Identities=21% Similarity=0.449 Sum_probs=48.5
Q ss_pred CCcEEEEEEcc-------CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHH
Q 016404 201 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 273 (390)
Q Consensus 201 ~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (390)
.|++++|+|.+ +|||.|....|.+++.....+ .+..+|.+.+.. ...|+. ++.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~----~~~~lv~v~VG~-r~~Wkd---------------p~n 77 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP----ENARLVYVEVGD-RPEWKD---------------PNN 77 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S----TTEEEEEEE----HHHHC----------------TTS
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC----CCceEEEEEcCC-HHHhCC---------------CCC
Confidence 34678888875 499999999999999888754 466777777653 233322 134
Q ss_pred HHHH--HccccccceEEEECCCCcEE
Q 016404 274 DLCR--IFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 274 ~l~~--~~~v~~~P~~~lid~~G~v~ 297 (390)
.+.. .+++.++||++-++..++++
T Consensus 78 ~fR~~p~~~l~~IPTLi~~~~~~rL~ 103 (119)
T PF06110_consen 78 PFRTDPDLKLKGIPTLIRWETGERLV 103 (119)
T ss_dssp HHHH--CC---SSSEEEECTSS-EEE
T ss_pred CceEcceeeeeecceEEEECCCCccc
Confidence 4444 69999999999997665543
|
; PDB: 1V9W_A 1WOU_A. |
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0001 Score=57.74 Aligned_cols=77 Identities=18% Similarity=0.524 Sum_probs=48.2
Q ss_pred cCCCEEEEEEec-------CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHH
Q 016404 40 CGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHK 112 (390)
Q Consensus 40 ~~gk~vll~F~a-------~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (390)
..|++++|.|++ +|||.|....|.+++......+. ..+|.|.+.. +..|+. .+.
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG~-r~~Wkd---------------p~n 77 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVGD-RPEWKD---------------PNN 77 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE----HHHHC----------------TTS
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcCC-HHHhCC---------------CCC
Confidence 457888999984 49999999999999988875443 5677777652 222211 113
Q ss_pred HHHH--hcCcCCCCeEEEEcCCCcc
Q 016404 113 KLRI--RYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 113 ~l~~--~~~v~~~P~~~~~d~~G~i 135 (390)
.+.. .++++++||++-++..+++
T Consensus 78 ~fR~~p~~~l~~IPTLi~~~~~~rL 102 (119)
T PF06110_consen 78 PFRTDPDLKLKGIPTLIRWETGERL 102 (119)
T ss_dssp HHHH--CC---SSSEEEECTSS-EE
T ss_pred CceEcceeeeeecceEEEECCCCcc
Confidence 4444 6999999999999755443
|
; PDB: 1V9W_A 1WOU_A. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00052 Score=61.84 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=57.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec---CCC-H-------------HHHHHhhhcCCcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DRD-H-------------KEFDLNHSIMPWL 263 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~---d~~-~-------------~~~~~~~~~~~~~ 263 (390)
.++.+|+.|..+.||+|+++.+.+.++.+. .+++|..+.+ ..+ . ..+..........
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 458899999999999999999887766443 2344444432 111 1 1122221111110
Q ss_pred cc-cC---------CchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 264 AI-PY---------EDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 264 ~~-~~---------~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+ +. ..+.+..+++.+|++++|++++.|.+|++...
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 00 10 11235578899999999999999999987555
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=53.90 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=40.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++|||+|.+..+.|.++. +... ++++-|+.+.+... ....+.+.+++.++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~---~~~~~v~~~~~~~~------------------~~~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPA---YEVVELDQLSNGSE------------------IQDYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCC---CEEEEeeCCCChHH------------------HHHHHHHHhCCCCCCe
Confidence 46789999999999999888875 2221 55665555433321 1234667789999999
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 58 v~i 60 (84)
T TIGR02180 58 IFI 60 (84)
T ss_pred EEE
Confidence 753
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >cd02339 ZZ_Mind_bomb Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.2e-05 Score=49.92 Aligned_cols=30 Identities=40% Similarity=1.008 Sum_probs=25.7
Q ss_pred eecccCCCC-ceEEEEcCCC-CCCCccccccc
Q 016404 356 VCDCCKMRG-RFWAFSCDVC-NYDLHPKCVEG 385 (390)
Q Consensus 356 iC~~C~e~g-~~~~~~~~~~-~~~~~~~~~~~ 385 (390)
.|++|++.. .|-+|+|.+| ||||+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 599999754 5999999999 69999999653
|
Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster. |
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00078 Score=54.04 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=88.7
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
++|.+.+.+ ++++++.||..+|..+ +-.-|.|......+++.+.++.+ ..|+.||.|- .-+-++|+...+...
T Consensus 27 ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DL-PFAq~RfC~aeGi~n 101 (158)
T COG2077 27 FTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDL-PFAQKRFCGAEGIEN 101 (158)
T ss_pred eEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCC-hhHHhhhhhhcCccc
Confidence 669999999 9999999987776666 55678999999999999888765 5699999884 335678888887665
Q ss_pred eecChh-HHHHHHHhcCcC--CC-------CeEEEEcCCCccccccccccccc
Q 016404 104 VPFDET-LHKKLRIRYRVD--RI-------PSLIPLASDGTLIEEDLIGLIED 146 (390)
Q Consensus 104 ~~~~~~-~~~~l~~~~~v~--~~-------P~~~~~d~~G~i~~~~~~~~i~~ 146 (390)
+....+ ....+.+.||+. .. -+++++|.+|++++..+..-|..
T Consensus 102 v~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~eit~ 154 (158)
T COG2077 102 VITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPEITE 154 (158)
T ss_pred ceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccchhhc
Confidence 544443 446678999863 33 48899999999998877655543
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0002 Score=50.95 Aligned_cols=55 Identities=20% Similarity=0.637 Sum_probs=40.0
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
+..|+++||++|+...+.|.+ .++.+..++++.+... ...+.+.+++.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~----------~~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS----------KGIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH----------CCCeEEEEeccCCHHH-------------------HHHHHHHhCCCccc
Confidence 457999999999998877754 2356777777654311 24567788999999
Q ss_pred eEEE
Q 016404 286 ALVL 289 (390)
Q Consensus 286 ~~~l 289 (390)
++++
T Consensus 53 ~~~~ 56 (74)
T TIGR02196 53 VIVI 56 (74)
T ss_pred EEEE
Confidence 9876
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00027 Score=50.97 Aligned_cols=62 Identities=19% Similarity=0.508 Sum_probs=39.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH-hcCcCCCC
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI-RYRVDRIP 124 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~P 124 (390)
+..||++||++|++..+.|.++ + +++..++++.+... ...+.. .++..++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhH-------------------HHHHHHHhCCCceeC
Confidence 5678999999999988876544 2 33556666654321 122222 24888999
Q ss_pred eEEEEcCCCcccc
Q 016404 125 SLIPLASDGTLIE 137 (390)
Q Consensus 125 ~~~~~d~~G~i~~ 137 (390)
++ +++ +|+.+.
T Consensus 54 ~i-~~~-~g~~l~ 64 (77)
T TIGR02200 54 TV-KFA-DGSFLT 64 (77)
T ss_pred EE-EEC-CCeEec
Confidence 97 454 666553
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00027 Score=54.11 Aligned_cols=72 Identities=24% Similarity=0.377 Sum_probs=51.9
Q ss_pred CCcEEEEEEcc--------CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHH
Q 016404 201 AGKTIGLYFGA--------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR 272 (390)
Q Consensus 201 ~gk~vlv~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (390)
+|+.++++|.+ +|||.|.+..|.+.+..+... .++.+|.+.+... |+-.+++
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap----~~~~~v~v~VG~r----------------p~Wk~p~ 83 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP----EDVHFVHVYVGNR----------------PYWKDPA 83 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC----CceEEEEEEecCC----------------CcccCCC
Confidence 34557788876 599999999999988888555 6777777776532 2223335
Q ss_pred HHHHHHccc-cccceEEEECC
Q 016404 273 QDLCRIFNI-KGIPALVLIGP 292 (390)
Q Consensus 273 ~~l~~~~~v-~~~P~~~lid~ 292 (390)
..+....++ .++||++=.++
T Consensus 84 n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 84 NPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CccccCCCceeecceeeEEcC
Confidence 566667776 89999988864
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=57.56 Aligned_cols=95 Identities=15% Similarity=0.305 Sum_probs=58.8
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-Ch---------------hHHHHHHHh
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-DE---------------NGFEEHFKC 98 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-~~---------------~~~~~~~~~ 98 (390)
+.+..-.++..++.|+.+.||+|+++.+.+.+ ...+..+.++.+.+.. .. ..|.++...
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 55555568999999999999999999998877 1223224444444432 11 122222222
Q ss_pred CCC----cceecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 99 MPW----LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 99 ~~~----~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
..- .......+.+..+++.+|+.++|+++ ++ +|+.+
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~-~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LA-DGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-EC-CCeEe
Confidence 111 01112445778999999999999998 53 56553
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=58.84 Aligned_cols=94 Identities=20% Similarity=0.396 Sum_probs=59.5
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---Ch----------------hHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DE----------------NGFEEH 95 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~ 95 (390)
+....-.|+.+++.|+.+.||+|+++.+.+.++.+ .+ ++|.++.+.. .. ..+.+.
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~ 173 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHEQMKDYNA----LG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDA 173 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHHHHHHHhc----CC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHH
Confidence 44444468999999999999999999988776533 34 6666654431 11 112222
Q ss_pred HHhCCC--cceecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 96 FKCMPW--LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 96 ~~~~~~--~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
...... .......+.+.++++++|++++|++++- +|+.+
T Consensus 174 ~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~--~G~~~ 214 (232)
T PRK10877 174 MKGKDVSPASCDVDIADHYALGVQFGVQGTPAIVLS--NGTLV 214 (232)
T ss_pred HcCCCCCcccccchHHHhHHHHHHcCCccccEEEEc--CCeEe
Confidence 221111 1111144678899999999999999853 67654
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0031 Score=56.09 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=53.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-----CH--------------HHHHHhhhcCC
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DH--------------KEFDLNHSIMP 261 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~--------------~~~~~~~~~~~ 261 (390)
.|+.+|+.|..+.||+|+++.+.+.++.+ .++.|..+.... .. ..+...+....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~ 178 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA-------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD 178 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc-------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 46889999999999999999988776532 345555543221 10 12222222111
Q ss_pred cc--cccCCchHHHHHHHHccccccceEEEECCCCcEE
Q 016404 262 WL--AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 262 ~~--~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
.. ......+.+..+++++||+++|++++ ++|+++
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 10 01112245678999999999999884 467654
|
|
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00017 Score=61.24 Aligned_cols=72 Identities=17% Similarity=0.331 Sum_probs=54.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+.+.++|.|++.|.+.|+++.|.+.++..+|...+ +++--|++..- ...+++|+|
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf-----------------------pd~a~kfri 197 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF-----------------------PDVAAKFRI 197 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC-----------------------cChHHheee
Confidence 45699999999999999999999999999998876 44444443321 355667766
Q ss_pred ------CCCCeEEEEcCCCccccc
Q 016404 121 ------DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ------~~~P~~~~~d~~G~i~~~ 138 (390)
+..||++++. +|+.+.|
T Consensus 198 s~s~~srQLPT~ilFq-~gkE~~R 220 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILFQ-KGKEVSR 220 (265)
T ss_pred ccCcccccCCeEEEEc-cchhhhc
Confidence 4689999995 7766543
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00063 Score=53.49 Aligned_cols=72 Identities=11% Similarity=0.209 Sum_probs=49.8
Q ss_pred cccCccCCCEEEEEEecC----CChhhhhhH--HHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecCh
Q 016404 35 VPLSSCGGKTICLFFSAN----WCRPCKTFT--PQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~----~C~~C~~~~--p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
++.+.-++|+++|+++++ ||..|+... |.+.+. ++++ +|.+..|.+..+
T Consensus 10 l~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~~-----fv~w~~dv~~~e----------------- 64 (116)
T cd02991 10 LNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INTR-----MLFWACSVAKPE----------------- 64 (116)
T ss_pred HHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHcC-----EEEEEEecCChH-----------------
Confidence 445556799999999999 888997655 344443 3333 555555543221
Q ss_pred hHHHHHHHhcCcCCCCeEEEEcCCC
Q 016404 109 TLHKKLRIRYRVDRIPSLIPLASDG 133 (390)
Q Consensus 109 ~~~~~l~~~~~v~~~P~~~~~d~~G 133 (390)
..+++..++++++|+++++.+.+
T Consensus 65 --g~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 65 --GYRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred --HHHHHHHhCCCCCCEEEEEEecC
Confidence 26899999999999999996443
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0022 Score=57.76 Aligned_cols=96 Identities=21% Similarity=0.236 Sum_probs=59.7
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC---C-------------Chh-HHHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD---H-------------DEN-GFEEHFK 97 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d---~-------------~~~-~~~~~~~ 97 (390)
+....-.+|.+++.|+.+.||+|+++.+.+.++.+. .. +++..+.+. . +.. .|..+..
T Consensus 110 i~~g~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~---g~--V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~ 184 (251)
T PRK11657 110 ILDGKADAPRIVYVFADPNCPYCKQFWQQARPWVDS---GK--VQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEA 184 (251)
T ss_pred ccccCCCCCeEEEEEECCCChhHHHHHHHHHHHhhc---Cc--eEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHH
Confidence 444445688999999999999999999888776542 12 556555431 1 111 1222211
Q ss_pred hCCC--c-ce---ec----ChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016404 98 CMPW--L-AV---PF----DETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 98 ~~~~--~-~~---~~----~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
.... + .. +- ..+.+..+++++|++++|++++.|.+|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~ 232 (251)
T PRK11657 185 SGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL 232 (251)
T ss_pred hhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 1110 0 00 00 12346678899999999999999988864
|
|
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0018 Score=47.83 Aligned_cols=65 Identities=22% Similarity=0.382 Sum_probs=44.3
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc--ccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG 283 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~ 283 (390)
++.|+.+||++|++....|+++..++ .++.+..++++.+..+ ..++.+.++ +..
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~-----~~i~~~~idi~~~~~~-------------------~~el~~~~~~~~~~ 58 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER-----DDFDYRYVDIHAEGIS-------------------KADLEKTVGKPVET 58 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc-----cCCcEEEEECCCChHH-------------------HHHHHHHHCCCCCc
Confidence 56799999999999999999988765 3456667776654311 123444444 578
Q ss_pred cceEEEECCCCcEE
Q 016404 284 IPALVLIGPDGKTI 297 (390)
Q Consensus 284 ~P~~~lid~~G~v~ 297 (390)
+|+++ + +|+.+
T Consensus 59 vP~if-i--~g~~i 69 (85)
T PRK11200 59 VPQIF-V--DQKHI 69 (85)
T ss_pred CCEEE-E--CCEEE
Confidence 99976 4 46554
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=47.38 Aligned_cols=57 Identities=28% Similarity=0.533 Sum_probs=40.3
Q ss_pred ccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEE
Q 016404 210 GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVL 289 (390)
Q Consensus 210 ~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~l 289 (390)
++++|+.|......++++.+.+. +.+-.+.. .+ ..++ .+|||.++|++ +
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~------i~~ei~~~-~~----------------------~~~~-~~ygv~~vPal-v 54 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG------IEVEIIDI-ED----------------------FEEI-EKYGVMSVPAL-V 54 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT------EEEEEEET-TT----------------------HHHH-HHTT-SSSSEE-E
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC------CeEEEEEc-cC----------------------HHHH-HHcCCCCCCEE-E
Confidence 57779999998888888877763 34433333 22 2555 89999999998 5
Q ss_pred ECCCCcEEee
Q 016404 290 IGPDGKTIST 299 (390)
Q Consensus 290 id~~G~v~~~ 299 (390)
| ||++++.
T Consensus 55 I--ng~~~~~ 62 (76)
T PF13192_consen 55 I--NGKVVFV 62 (76)
T ss_dssp E--TTEEEEE
T ss_pred E--CCEEEEE
Confidence 5 5888766
|
... |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0027 Score=55.09 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=53.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC--CH--------------HHHHHhhhcCCc--
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DH--------------KEFDLNHSIMPW-- 262 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~--~~--------------~~~~~~~~~~~~-- 262 (390)
.++++++.|..+.||+|+++.+.+.+ .. .+-.+.++.+.+.. .. +.|.+.......
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NA--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----cc--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 36899999999999999999988876 11 11334444444432 11 123222222111
Q ss_pred --ccccCCchHHHHHHHHccccccceEEEECCCCcEE
Q 016404 263 --LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 263 --~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
.......+.+..+++.+||.++|+++ + .+|+++
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 01112334567899999999999997 5 456653
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0017 Score=48.76 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=49.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC--CC-----hhHHHHHHHhC-CCcceec-ChhHHHHHHH
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD--HD-----ENGFEEHFKCM-PWLAVPF-DETLHKKLRI 116 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d--~~-----~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~ 116 (390)
+..|+.+.||+|..+.+.+.++......+ +++....+. .. ....+...... ......+ ..-.....++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGG---VRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCc---EEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 46789999999999999999987444332 666666653 22 11111111100 0000011 0114577889
Q ss_pred hcCcCCCCeEEEEc
Q 016404 117 RYRVDRIPSLIPLA 130 (390)
Q Consensus 117 ~~~v~~~P~~~~~d 130 (390)
.+|+.++|++++-+
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 99999999999876
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0027 Score=43.37 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=39.4
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+.+|||+|.+....| ++.+ +.+..++++.+.+ ....+.+..|..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~~-------------------~~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDEE-------------------AREELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSHH-------------------HHHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccchh-------------------HHHHHHHHcCCCccCE
Confidence 4678999999999877655 2334 6677777776542 1255666669999999
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 53 v~i 55 (60)
T PF00462_consen 53 VFI 55 (60)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0029 Score=43.22 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=38.6
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|+.+||++|+.....|+ + .++.+-.+.++.+.+ ....+.+..|..++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~----~------~~i~y~~~dv~~~~~-------------------~~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD----E------KGIPYEEVDVDEDEE-------------------AREELKELSGVRTVP 51 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH----H------TTBEEEEEEGGGSHH-------------------HHHHHHHHHSSSSSS
T ss_pred cEEEEcCCCcCHHHHHHHHH----H------cCCeeeEcccccchh-------------------HHHHHHHHcCCCccC
Confidence 46789999999998777662 2 345666677765531 134566666999999
Q ss_pred eEEE
Q 016404 286 ALVL 289 (390)
Q Consensus 286 ~~~l 289 (390)
++++
T Consensus 52 ~v~i 55 (60)
T PF00462_consen 52 QVFI 55 (60)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >cd02342 ZZ_UBA_plant Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00033 Score=43.26 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=26.0
Q ss_pred eecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016404 356 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~e-~g~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+. +-.|-||+|..|. |||...|-.
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~ 32 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFS 32 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhh
Confidence 5999998 7889999999997 999999954
|
Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding. |
| >cd02341 ZZ_ZZZ3 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00035 Score=45.08 Aligned_cols=31 Identities=29% Similarity=0.757 Sum_probs=27.9
Q ss_pred eeecccCC-CCceEEEEcCCCC---CCCccccccc
Q 016404 355 YVCDCCKM-RGRFWAFSCDVCN---YDLHPKCVEG 385 (390)
Q Consensus 355 ~iC~~C~e-~g~~~~~~~~~~~---~~~~~~~~~~ 385 (390)
|.|++|++ +-.|.||+|.+|. |||...|-..
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 57999998 8899999999998 9999999653
|
Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0036 Score=53.82 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=56.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+++.+++.||++||.+|..+...+..+.+.+++ +.+++++.++ ...++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~------~~~~k~~a~~---------------------~~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN------AQFLKLEAEE---------------------FPEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh------heeeeehhhh---------------------hhHHHHHHHH
Confidence 789999999999999999999999999888732 6666666555 3789999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
...|+++++- .|+.+
T Consensus 69 ~~vp~~~~~~-~~~~v 83 (227)
T KOG0911|consen 69 EAVPYFVFFF-LGEKV 83 (227)
T ss_pred hcCceeeeee-cchhh
Confidence 9999999884 55544
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0031 Score=50.39 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=51.3
Q ss_pred CCEEEEEEecC--CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 42 GKTICLFFSAN--WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 42 gk~vll~F~a~--~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
+...+|+|.+. -++-+....-.|.++.++|.+.. +.++-|++| ++ ..++.+||
T Consensus 34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~--v~~akVDiD--~~---------------------~~LA~~fg 88 (132)
T PRK11509 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLE--QS---------------------EAIGDRFG 88 (132)
T ss_pred CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc--eEEEEEECC--CC---------------------HHHHHHcC
Confidence 34556666532 35667778889999999996432 555555555 33 68999999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
|.++||+++|. +|+.+.+
T Consensus 89 V~siPTLl~Fk-dGk~v~~ 106 (132)
T PRK11509 89 VFRFPATLVFT-GGNYRGV 106 (132)
T ss_pred CccCCEEEEEE-CCEEEEE
Confidence 99999999995 9987743
|
|
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0029 Score=46.74 Aligned_cols=39 Identities=10% Similarity=0.270 Sum_probs=31.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~ 88 (390)
+..|+.+||++|.+....|+++..+++ + +.+..++++.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~ 41 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAE 41 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCC
Confidence 677899999999999999999887653 3 66777777754
|
|
| >cd02249 ZZ Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00051 Score=44.22 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=28.7
Q ss_pred eeecccCCCCceEEEEcCCCC-CCCcccccccc
Q 016404 355 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEGI 386 (390)
Q Consensus 355 ~iC~~C~e~g~~~~~~~~~~~-~~~~~~~~~~~ 386 (390)
|.|+.|.....|-+|+|.+|. |||+..|-...
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 579999998889999999999 99999997643
|
Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0049 Score=44.44 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=39.7
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeEE
Q 016404 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLI 127 (390)
Q Consensus 48 ~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 127 (390)
.+++++|+.|......++++.+.++ +++-.+.. .+. .++ .+||+.++|++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~-~~~----------------------~~~-~~ygv~~vPal- 53 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI-EDF----------------------EEI-EKYGVMSVPAL- 53 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET-TTH----------------------HHH-HHTT-SSSSEE-
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc-cCH----------------------HHH-HHcCCCCCCEE-
Confidence 3367889999998888888888763 34444443 122 455 99999999999
Q ss_pred EEcCCCcccc
Q 016404 128 PLASDGTLIE 137 (390)
Q Consensus 128 ~~d~~G~i~~ 137 (390)
++ ||+++.
T Consensus 54 vI--ng~~~~ 61 (76)
T PF13192_consen 54 VI--NGKVVF 61 (76)
T ss_dssp EE--TTEEEE
T ss_pred EE--CCEEEE
Confidence 45 466553
|
... |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0026 Score=46.37 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=39.0
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.|.++|||+|....+.|.++.. .+.++-+..+.+..+. ...+.+..|..++|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P 55 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVP 55 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence 467889999999998888877643 3456666665442111 23466677889999
Q ss_pred eEE
Q 016404 286 ALV 288 (390)
Q Consensus 286 ~~~ 288 (390)
.++
T Consensus 56 ~v~ 58 (82)
T cd03419 56 NVF 58 (82)
T ss_pred eEE
Confidence 964
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >cd02344 ZZ_HERC2 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00082 Score=42.61 Aligned_cols=29 Identities=31% Similarity=0.793 Sum_probs=25.9
Q ss_pred eecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016404 356 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~e-~g~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+. +-.|-||+|.+|. |||...|-.
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~ 32 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFK 32 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhC
Confidence 5999996 7888999999998 999999954
|
Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0094 Score=51.78 Aligned_cols=114 Identities=11% Similarity=0.125 Sum_probs=77.9
Q ss_pred cCCceEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH-HhhhcC
Q 016404 182 EGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD-LNHSIM 260 (390)
Q Consensus 182 ~~p~f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~-~~~~~~ 260 (390)
++|.+.+ |....+.+..|+++||.+-..+|..|...+..|+.|..++....-.++.++.|+--.....+. ..++..
T Consensus 9 ~~p~W~i---~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r 85 (238)
T PF04592_consen 9 PPPPWKI---GGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR 85 (238)
T ss_pred CCCCceE---CCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh
Confidence 3455554 224567778899999999999999999999999999999986444577777777543332222 222222
Q ss_pred CcccccCCc--hHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 261 PWLAIPYED--RARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 261 ~~~~~~~~~--~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
--..+|+.. .....+...++-.. =.++|+|+=|++++.
T Consensus 86 ~~~~ipVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 86 VSEHIPVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred CCCCCceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 223456542 23456777776443 467999999999987
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >cd02343 ZZ_EF Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00067 Score=43.44 Aligned_cols=29 Identities=28% Similarity=0.701 Sum_probs=26.2
Q ss_pred eecccCCCCceEEEEcCCCC-CCCcccccc
Q 016404 356 VCDCCKMRGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~e~g~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+..-.+.||+|.+|. |||...|-.
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~ 31 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFL 31 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHh
Confidence 49999998889999999998 999999944
|
Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0071 Score=54.69 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=51.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+.+|||.||-+.++.|..+...|..|+.+|+. ++++-|..... . +...|.+
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-----vKFvkI~a~~~-----------------------~-~~~~f~~ 196 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE-----VKFVKIRASKC-----------------------P-ASENFPD 196 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-----SEEEEEEECGC-----------------------C-TTTTS-T
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-----eEEEEEehhcc-----------------------C-cccCCcc
Confidence 46899999999999999999999999999964 67777765421 1 4457889
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
..+|+++++ ++|.++..
T Consensus 197 ~~LPtllvY-k~G~l~~~ 213 (265)
T PF02114_consen 197 KNLPTLLVY-KNGDLIGN 213 (265)
T ss_dssp TC-SEEEEE-ETTEEEEE
T ss_pred cCCCEEEEE-ECCEEEEe
Confidence 999999999 78887765
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >cd02335 ZZ_ADA2 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00097 Score=43.50 Aligned_cols=30 Identities=30% Similarity=0.738 Sum_probs=26.2
Q ss_pred eeecccCCCCce-EEEEcCCC-CCCCcccccc
Q 016404 355 YVCDCCKMRGRF-WAFSCDVC-NYDLHPKCVE 384 (390)
Q Consensus 355 ~iC~~C~e~g~~-~~~~~~~~-~~~~~~~~~~ 384 (390)
|.|++|.+...+ .+|+|.+| ||||...|-.
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhh
Confidence 569999997776 79999999 6999999954
|
Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0081 Score=49.39 Aligned_cols=111 Identities=17% Similarity=0.262 Sum_probs=80.0
Q ss_pred CcceeecC-CCccccCccCCCEEEEEEe--cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh--HH----HH
Q 016404 24 GVEFLLSR-QGKVPLSSCGGKTICLFFS--ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GF----EE 94 (390)
Q Consensus 24 ~~~~l~~~-~g~~~l~~~~gk~vll~F~--a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~----~~ 94 (390)
.+.+-.+. .|++.+.++-|--+.|.|. +..-|.|..+...+.+++-+|..++ +..++.++|.-++ .| +.
T Consensus 12 ~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~vesH~~Wi~DIks 89 (224)
T KOG0854|consen 12 VPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDVESHKDWIKDIKS 89 (224)
T ss_pred CCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhHHHHHHHHHHHHH
Confidence 33443333 4449999998877777777 6788999999999999999999888 8899999995332 22 23
Q ss_pred HHHhCC-CcceecChhHHHHHHHhcCcC------------CCCeEEEEcCCCccc
Q 016404 95 HFKCMP-WLAVPFDETLHKKLRIRYRVD------------RIPSLIPLASDGTLI 136 (390)
Q Consensus 95 ~~~~~~-~~~~~~~~~~~~~l~~~~~v~------------~~P~~~~~d~~G~i~ 136 (390)
|.+..+ -..+|+..+.+++++-.|++- ..-.+++++++.++.
T Consensus 90 ~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKir 144 (224)
T KOG0854|consen 90 YAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIR 144 (224)
T ss_pred HHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEE
Confidence 333222 255666777788999888762 245788999888776
|
|
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0048 Score=46.18 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=49.2
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC--CC----HHH-HHHhhh--cCC-cccccCCchHHHHH
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD--RD----HKE-FDLNHS--IMP-WLAIPYEDRARQDL 275 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d--~~----~~~-~~~~~~--~~~-~~~~~~~~~~~~~l 275 (390)
|..|+.+.||+|....+.+.++..... .++.+....+. .. ... ...... ... ...+.... .+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ 75 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD----GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL-ADTAL 75 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC----CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH-HHHHH
Confidence 467999999999999999999874443 56777766552 22 111 111100 000 00000000 35678
Q ss_pred HHHccccccceEEEEC
Q 016404 276 CRIFNIKGIPALVLIG 291 (390)
Q Consensus 276 ~~~~~v~~~P~~~lid 291 (390)
++.+|+.++|++++-|
T Consensus 76 ~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 76 ARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHcCCCCCCEEEECC
Confidence 8899999999998876
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0087 Score=42.17 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=36.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++||++|.+....|.+ .+ +++..+++|.+... ...+.+..++..+|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence 467889999999987766654 23 55666777654321 133444457889999
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 865
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0045 Score=47.61 Aligned_cols=73 Identities=18% Similarity=0.438 Sum_probs=49.4
Q ss_pred CCCEEEEEEec--------CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHH
Q 016404 41 GGKTICLFFSA--------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHK 112 (390)
Q Consensus 41 ~gk~vll~F~a--------~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (390)
+|+.+++.|++ +|||.|.+..|.+.+..+....+ +.+|.|.+..-+ . |. +.+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~---~~~v~v~VG~rp-~---------Wk------~p~n 84 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED---VHFVHVYVGNRP-Y---------WK------DPAN 84 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc---eEEEEEEecCCC-c---------cc------CCCC
Confidence 57779999984 69999999999999888754433 666666665321 1 21 1123
Q ss_pred HHHHhcCc-CCCCeEEEEcCC
Q 016404 113 KLRIRYRV-DRIPSLIPLASD 132 (390)
Q Consensus 113 ~l~~~~~v-~~~P~~~~~d~~ 132 (390)
.+....++ +++||++=.++.
T Consensus 85 ~FR~d~~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 85 PFRKDPGILTAVPTLLRWKRQ 105 (128)
T ss_pred ccccCCCceeecceeeEEcCc
Confidence 44455555 899999988743
|
|
| >cd02334 ZZ_dystrophin Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0014 Score=42.47 Aligned_cols=29 Identities=31% Similarity=0.663 Sum_probs=25.6
Q ss_pred eecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016404 356 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~e-~g~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+. .-.|.||+|.+|. |||...|-.
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~ 32 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFF 32 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHh
Confidence 4999997 6789999999998 999999954
|
Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0068 Score=44.15 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=38.4
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++|||+|....+.|.++.. .++++-++.+.+... ....+.+.+|..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~------------------~~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSE------------------IQDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHH------------------HHHHHHHHhCCCCCCe
Confidence 477889999999998887777543 155666665543211 1135566778899999
Q ss_pred EE
Q 016404 126 LI 127 (390)
Q Consensus 126 ~~ 127 (390)
++
T Consensus 57 v~ 58 (82)
T cd03419 57 VF 58 (82)
T ss_pred EE
Confidence 74
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.00077 Score=43.34 Aligned_cols=32 Identities=34% Similarity=0.730 Sum_probs=25.0
Q ss_pred CceeecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016404 353 KAYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 353 ~~~iC~~C~e-~g~~~~~~~~~~~-~~~~~~~~~ 384 (390)
..+.|++|+. .-.|-+|+|..|. |||...|-.
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~ 36 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFS 36 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHH
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHh
Confidence 3578999998 7788899999998 999999954
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A. |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0024 Score=54.93 Aligned_cols=68 Identities=15% Similarity=0.315 Sum_probs=53.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+++.+++.||+.||.+|..+...+..+.+.++. +.+++.+.+. ...+++.+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~-------~~~~k~~a~~---------------------~~eis~~~~ 67 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN-------AQFLKLEAEE---------------------FPEISNLIA 67 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh-------heeeeehhhh---------------------hhHHHHHHH
Confidence 568899999999999999999999888887743 5555555432 578899999
Q ss_pred ccccceEEEECCCCcEE
Q 016404 281 IKGIPALVLIGPDGKTI 297 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~ 297 (390)
+.+.|.+.++ ..|+.+
T Consensus 68 v~~vp~~~~~-~~~~~v 83 (227)
T KOG0911|consen 68 VEAVPYFVFF-FLGEKV 83 (227)
T ss_pred HhcCceeeee-ecchhh
Confidence 9999999888 344433
|
|
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.087 Score=44.73 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=47.5
Q ss_pred CcE-EEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 202 GKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 202 gk~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+++ +++.|..............|..++++++ ..+.++.+..+. ...+.+.||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~~f~~~d~~~-----------------------~~~~~~~~~ 146 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFK----GKINFVYVDADD-----------------------FPRLLKYFG 146 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT----TTSEEEEEETTT-----------------------THHHHHHTT
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcC----CeEEEEEeehHH-----------------------hHHHHHHcC
Confidence 444 6777765555556777777888887776 456676666653 356778999
Q ss_pred cc--ccceEEEECCCCcE
Q 016404 281 IK--GIPALVLIGPDGKT 296 (390)
Q Consensus 281 v~--~~P~~~lid~~G~v 296 (390)
+. .+|.+++++.....
T Consensus 147 i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 147 IDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp TTTSSSSEEEEEETTTSE
T ss_pred CCCccCCEEEEEECCCCc
Confidence 97 89999999855443
|
... |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=42.83 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=39.4
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
.+.-++.|+.+||++|.+....|.+ .+ +++..++++.+.+ ...+.+..|..
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~~--------------------~~~~~~~~g~~ 56 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDAR--------------------GRSLRAVTGAT 56 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCChH--------------------HHHHHHHHCCC
Confidence 3444678899999999987776653 34 4555667765433 13455567889
Q ss_pred CCCeEEE
Q 016404 122 RIPSLIP 128 (390)
Q Consensus 122 ~~P~~~~ 128 (390)
.+|.+++
T Consensus 57 ~vP~i~i 63 (79)
T TIGR02190 57 TVPQVFI 63 (79)
T ss_pred CcCeEEE
Confidence 9999864
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0087 Score=44.29 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=37.8
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC--cCCC
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR--VDRI 123 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~ 123 (390)
++.|+.+|||+|.+....|.++..++. + +.+..++++.+... ...+.+.++ ..++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~tV 58 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIHAEGIS-------------------KADLEKTVGKPVETV 58 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCCCc
Confidence 567889999999988887777654322 2 45666666533210 133445555 3789
Q ss_pred CeEEE
Q 016404 124 PSLIP 128 (390)
Q Consensus 124 P~~~~ 128 (390)
|.+++
T Consensus 59 P~ifi 63 (86)
T TIGR02183 59 PQIFV 63 (86)
T ss_pred CeEEE
Confidence 99854
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0061 Score=53.33 Aligned_cols=113 Identities=12% Similarity=0.217 Sum_probs=75.1
Q ss_pred hccCcce-eecCCCc--cccCccC--CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC--------
Q 016404 21 ASEGVEF-LLSRQGK--VPLSSCG--GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------- 87 (390)
Q Consensus 21 ~~~~~~~-l~~~~g~--~~l~~~~--gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------- 87 (390)
+..++++ +++.+|+ .++.++. ++|++|+|.+-.||+-+.-...++++.++|.+. .+++.|.+.+
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VYI~EAHpsDgW~ 152 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVYIEEAHPSDGWA 152 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhhHhhhCcCCCcc
Confidence 4445555 8888888 7888873 689999999999999999999999999999985 3455555421
Q ss_pred ---C----------hh---HHHHHHHhCCCcceec-ChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016404 88 ---D----------EN---GFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 88 ---~----------~~---~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
+ ++ ..+.+.+.. ...|+ ....++...+.||...- .++++. +|++++..+
T Consensus 153 ~~~~~~~i~qh~sledR~~aA~~l~~~~--~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi~-~gkv~Y~Gg 218 (237)
T PF00837_consen 153 FGNNPYEIPQHRSLEDRLRAAKLLKEEF--PQCPIVVDTMDNNFNKAYGALPE-RLYIIQ-DGKVVYKGG 218 (237)
T ss_pred CCCCceeecCCCCHHHHHHHHHHHHhhC--CCCCEEEEccCCHHHHHhCCCcc-eEEEEE-CCEEEEeCC
Confidence 0 11 112222233 34455 23345667777876543 444553 899988765
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.021 Score=40.20 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=35.1
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|+++||++|......|.+ .++.+..+.+|.+... ...+.+..++.++|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~----------~~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP 52 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE----------RGIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVP 52 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH----------CCCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccC
Confidence 467899999999987766654 2244555666654211 12344444788999
Q ss_pred eEEE
Q 016404 286 ALVL 289 (390)
Q Consensus 286 ~~~l 289 (390)
++++
T Consensus 53 ~i~~ 56 (73)
T cd02976 53 VVVI 56 (73)
T ss_pred EEEE
Confidence 9865
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0083 Score=46.44 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=36.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|..+|||+|.+....|.+..-.. . .+..+++|.... .......+.+..|.+++|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~----~--~~~~i~i~~~~~----------------~~~~~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR----G--AYEIVDIKEFKP----------------ENELRDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc----C--CcEEEECCCCCC----------------CHHHHHHHHHHcCCCCcCE
Confidence 56788999999998776665542111 1 244455553111 0112356667778889999
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 73 IfI 75 (108)
T PHA03050 73 IFF 75 (108)
T ss_pred EEE
Confidence 854
|
|
| >smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0021 Score=40.85 Aligned_cols=31 Identities=35% Similarity=0.752 Sum_probs=27.6
Q ss_pred ceeecccCCCCceEEEEcCCCC-CCCcccccc
Q 016404 354 AYVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 354 ~~iC~~C~e~g~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.+.|+.|+..-.|-+|+|..|. |||.+.|-.
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~ 35 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFA 35 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHh
Confidence 5779999998889999999995 999999954
|
Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3]. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.017 Score=43.98 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=35.7
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++-|..+|||+|.+....|.+. + +....+++|.+.+. .+....+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~--i~~~~vdid~~~~~----------------~~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------G--VNPAVHEIDKEPAG----------------KDIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CCCEEEEcCCCccH----------------HHHHHHHHHhcCCCCcCe
Confidence 5667889999999876655432 3 33455666644321 111234555567889999
Q ss_pred EEEEc
Q 016404 126 LIPLA 130 (390)
Q Consensus 126 ~~~~d 130 (390)
+ +++
T Consensus 65 V-fi~ 68 (99)
T TIGR02189 65 V-FVG 68 (99)
T ss_pred E-EEC
Confidence 7 453
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.028 Score=56.43 Aligned_cols=79 Identities=27% Similarity=0.364 Sum_probs=54.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.+||++|....+||-.|..+..+= .++++-..+ .+|.|.+|+++ -|..+.....+++
T Consensus 42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------~FV~IKVDREE--------------RPDvD~~Ym~~~q 101 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------NFVPVKVDREE--------------RPDVDSLYMNASQ 101 (667)
T ss_pred hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------CceeeeEChhh--------------ccCHHHHHHHHHH
Confidence 359999999999999999886321 223333332 48999999864 2333333344554
Q ss_pred Hcc-ccccceEEEECCCCcEEee
Q 016404 278 IFN-IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 278 ~~~-v~~~P~~~lid~~G~v~~~ 299 (390)
... -.++|-++++-|+|+..+.
T Consensus 102 ~~tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 102 AITGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred HhccCCCCceeEEECCCCceeee
Confidence 443 4589999999999999876
|
|
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.018 Score=49.40 Aligned_cols=105 Identities=19% Similarity=0.352 Sum_probs=75.6
Q ss_pred eecCCCccccCcc-CCC--EEEEEEe-----cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC
Q 016404 28 LLSRQGKVPLSSC-GGK--TICLFFS-----ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 28 l~~~~g~~~l~~~-~gk--~vll~F~-----a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 99 (390)
+...+|+++|.++ .|+ .++..|. ...|+.|..++-.+......+...+ +.++.|+-. ..+.+.+|.+.|
T Consensus 51 F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~~~i~afk~rm 127 (211)
T PF05988_consen 51 FDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PLEKIEAFKRRM 127 (211)
T ss_pred EeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CHHHHHHHHHhc
Confidence 6667777998886 565 3333333 4679999999999977778788776 778888755 556789999999
Q ss_pred CCcceecChhHHHHHHHhcCc-----CCCCeEEEEcCCCccc
Q 016404 100 PWLAVPFDETLHKKLRIRYRV-----DRIPSLIPLASDGTLI 136 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~~~d~~G~i~ 136 (390)
+|. +|+.......+...|++ ...|.+-+|-++|..+
T Consensus 128 GW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~V 168 (211)
T PF05988_consen 128 GWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRV 168 (211)
T ss_pred CCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEE
Confidence 998 88855545566677776 4567666665565444
|
|
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.038 Score=38.59 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=39.1
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|.++||++|+.....|.+.. +.+..+.++.+.+. ...+.+..+...+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~----------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P 52 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG----------IEFEEIDILEDGEL-------------------REELKELSGWPTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC----------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence 45688999999999888776542 34556666554321 24555666778889
Q ss_pred eEEEECCCCcEE
Q 016404 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
++++ +|+.+
T Consensus 53 ~~~~---~~~~i 61 (72)
T cd02066 53 QIFI---NGEFI 61 (72)
T ss_pred EEEE---CCEEE
Confidence 7753 45544
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.12 Score=42.37 Aligned_cols=120 Identities=12% Similarity=0.178 Sum_probs=72.2
Q ss_pred CeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHH-hhcccCCceEEEEE-ecCCCH--------HHHHHhhhcCCc
Q 016404 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANHCFEVVLV-STDRDH--------KEFDLNHSIMPW 262 (390)
Q Consensus 193 ~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~~vv~v-~~d~~~--------~~~~~~~~~~~~ 262 (390)
++.+.+.+.||+-+|...|-.-..=..-.|.+..+.+. |+. +.++...| +.|... ...+..-+.+||
T Consensus 28 ~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~---d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~ 104 (160)
T PF09695_consen 28 QPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH---DKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPW 104 (160)
T ss_pred cccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc---cceeEEEEEecccccccchHHHHHHHHHhhhhCCC
Confidence 34555677899988887766544434445666666554 554 56666555 444321 222233335555
Q ss_pred ccccCCchHHHHHHHHcccccc-ceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHH
Q 016404 263 LAIPYEDRARQDLCRIFNIKGI-PALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK 328 (390)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~v~~~-P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~ 328 (390)
-.+- .|.+..+.+.|++..- -.++++|++|+|++. ..|. .+++.+++..+.++
T Consensus 105 s~~v--lD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~-------k~G~----Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 105 SQFV--LDSNGVVRKAWQLQEESSAIIVLDKQGKVQFV-------KEGA----LSPAEVQQVIALLK 158 (160)
T ss_pred cEEE--EcCCCceeccccCCCCCceEEEEcCCccEEEE-------ECCC----CCHHHHHHHHHHHh
Confidence 5443 3445677888887643 568899999999998 3443 45566666655544
|
|
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.03 Score=48.08 Aligned_cols=111 Identities=20% Similarity=0.397 Sum_probs=77.0
Q ss_pred CCceEEeCCCCeeeeccc-CCcEEE-EE-E-----ccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016404 183 GRDYVLSRDHRKITVSEL-AGKTIG-LY-F-----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 183 ~p~f~l~~~g~~~~l~~~-~gk~vl-v~-F-----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
..+++++....+++|.++ .|+-.| |+ | |..-|+-|-..+..++.....+.+ .++.++.|+-. ..+++.
T Consensus 46 ~~~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~---rd~tfa~vSra-P~~~i~ 121 (211)
T PF05988_consen 46 DKDYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHA---RDTTFAVVSRA-PLEKIE 121 (211)
T ss_pred CCCeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHh---CCceEEEEeCC-CHHHHH
Confidence 345777444444888886 665333 32 3 246799999999999666677765 77888888854 567888
Q ss_pred HhhhcCCcccccCCchHHHHHHHHccc-----cccceEEEECCCCcEEe
Q 016404 255 LNHSIMPWLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDGKTIS 298 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~v~~ 298 (390)
.+.+.++|. +|........+...|++ ...|.+-+|=++|--|+
T Consensus 122 afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vf 169 (211)
T PF05988_consen 122 AFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVF 169 (211)
T ss_pred HHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEE
Confidence 888999998 88876666677778887 45677665545544443
|
|
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.027 Score=39.34 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=37.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++||++|+.....|.+.. +.+..++++.+.+ ....+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~-------------------~~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGE-------------------LREELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHH-------------------HHHHHHHHhCCCCcCE
Confidence 46788999999998887766542 3466667665442 1245556667788898
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 54 ~~~ 56 (72)
T cd02066 54 IFI 56 (72)
T ss_pred EEE
Confidence 754
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.05 Score=41.49 Aligned_cols=75 Identities=11% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
..++++|+=.++.||-+......+++.++...+. +.++++.+=..+. ....+++.|||
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~-------------------vSn~IAe~~~V 75 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRP-------------------VSNAIAEDFGV 75 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHH-------------------HHHHHHHHHT-
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCch-------------------hHHHHHHHhCC
Confidence 4788899889999999999888888888876553 6788888754443 23789999999
Q ss_pred CC-CCeEEEEcCCCccccc
Q 016404 121 DR-IPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~-~P~~~~~d~~G~i~~~ 138 (390)
.. -|.++++. +|+.++.
T Consensus 76 ~HeSPQ~ili~-~g~~v~~ 93 (105)
T PF11009_consen 76 KHESPQVILIK-NGKVVWH 93 (105)
T ss_dssp ---SSEEEEEE-TTEEEEE
T ss_pred CcCCCcEEEEE-CCEEEEE
Confidence 85 89999995 9988854
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.016 Score=42.89 Aligned_cols=59 Identities=19% Similarity=0.324 Sum_probs=37.4
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc--ccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG 283 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~ 283 (390)
++.|..+|||+|.+....|.++..++ .++.+..+.++.+... ...+.+.++ +..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-----~~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~t 57 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-----ADFEFRYIDIHAEGIS-------------------KADLEKTVGKPVET 57 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-----CCCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCC
Confidence 56789999999999888887765433 2344555555533211 234555555 378
Q ss_pred cceEE
Q 016404 284 IPALV 288 (390)
Q Consensus 284 ~P~~~ 288 (390)
+|.++
T Consensus 58 VP~if 62 (86)
T TIGR02183 58 VPQIF 62 (86)
T ss_pred cCeEE
Confidence 99984
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >cd02338 ZZ_PCMF_like Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0051 Score=40.04 Aligned_cols=29 Identities=31% Similarity=0.744 Sum_probs=25.3
Q ss_pred eecccC-CCCceEEEEcCCCC-CCCcccccc
Q 016404 356 VCDCCK-MRGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~-e~g~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+ ..-.|-+|+|.+|. |||...|-.
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~ 32 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYD 32 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHh
Confidence 599999 56778999999997 999999954
|
Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination. |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.014 Score=47.95 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=33.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEec
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~ 85 (390)
.++++++.|+.++||+|+.+.|.+.++..++.+ +.+++..+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~----~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD----VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC----ceEEEEeC
Confidence 578999999999999999999999988776532 55666543
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.038 Score=39.17 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=36.2
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|..+|||+|.+....|.+ .+ +.+..++++.+.. ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 567889999999987766653 33 4455666664432 134445568889999
Q ss_pred EEEEc
Q 016404 126 LIPLA 130 (390)
Q Consensus 126 ~~~~d 130 (390)
+ +++
T Consensus 54 i-fi~ 57 (72)
T cd03029 54 V-FID 57 (72)
T ss_pred E-EEC
Confidence 7 453
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >cd02345 ZZ_dah Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0064 Score=39.58 Aligned_cols=29 Identities=31% Similarity=0.742 Sum_probs=25.7
Q ss_pred eecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016404 356 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 356 iC~~C~e-~g~~~~~~~~~~~-~~~~~~~~~ 384 (390)
.|++|+. .-.|-+|+|.+|. |||...|-.
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~ 32 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYT 32 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHh
Confidence 5999999 7778899999998 999999954
|
Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila. |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.05 Score=38.64 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=36.8
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|+.+||++|++....|++ .+ +.+..++++.+.+. ..++.+..+-..+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPER-------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 456778999999987776664 34 55666677654431 245666667778898
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 55 v~i 57 (73)
T cd03027 55 IFF 57 (73)
T ss_pred EEE
Confidence 744
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.054 Score=39.50 Aligned_cols=54 Identities=19% Similarity=0.384 Sum_probs=35.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|..+||++|.+....|.+ .| +.+..++++.+.+. ...+ +..|...+|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g--I~~~~idi~~~~~~-------------------~~~~-~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG--FDFEMINVDRVPEA-------------------AETL-RAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHH-HHcCCCCcCE
Confidence 567889999999987766633 45 56667777755431 1222 3357789999
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 865
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.031 Score=40.38 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=35.7
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeE
Q 016404 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSL 126 (390)
Q Consensus 47 l~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 126 (390)
..|+.+|||+|......|++ .+ +++..++++.+.+. ..++.+..|..++|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~--i~~~~~di~~~~~~-------------------~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KG--VTFTEIRVDGDPAL-------------------RDEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cC--CCcEEEEecCCHHH-------------------HHHHHHHhCCCCcCEE
Confidence 56789999999988777764 23 44555566654421 2455556678889997
Q ss_pred EE
Q 016404 127 IP 128 (390)
Q Consensus 127 ~~ 128 (390)
++
T Consensus 54 ~i 55 (79)
T TIGR02181 54 FI 55 (79)
T ss_pred EE
Confidence 44
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.039 Score=39.29 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=35.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC-CCC
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD-RIP 124 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~P 124 (390)
+..|+.++||+|.+....|++ .+ +.+..++++.+.+. ...+.+.++.. ++|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPAL-------------------REEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCccC
Confidence 457889999999987776654 23 45666677654321 13455556666 899
Q ss_pred eEE
Q 016404 125 SLI 127 (390)
Q Consensus 125 ~~~ 127 (390)
.++
T Consensus 54 ~v~ 56 (75)
T cd03418 54 QIF 56 (75)
T ss_pred EEE
Confidence 764
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.022 Score=44.06 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=38.6
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.|..+|||+|++....|.++.-.. ..++++-|.-..+..+ ....+.+..|...+|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tVP 71 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENE------------------LRDYFEQITGGRTVP 71 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCcC
Confidence 55689999999998777775542211 2344544442111111 134566667888999
Q ss_pred eEEEECCCCcEE
Q 016404 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
.+ +|| |+.+
T Consensus 72 ~I-fI~--g~~i 80 (108)
T PHA03050 72 RI-FFG--KTSI 80 (108)
T ss_pred EE-EEC--CEEE
Confidence 97 453 5543
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.051 Score=38.53 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=35.0
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeE
Q 016404 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSL 126 (390)
Q Consensus 47 l~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 126 (390)
..|+.++||+|++....|.+ .+ +.+..++++.+.+. ...+ ...|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~-------------------~~~~-~~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEA-------------------IDYV-KAQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHH-HHcCCcccCEE
Confidence 45778999999988777754 34 55666777655431 1233 33588899997
Q ss_pred EE
Q 016404 127 IP 128 (390)
Q Consensus 127 ~~ 128 (390)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 55
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.043 Score=39.75 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=39.4
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
+.-|+.|..+||++|++....|.+ .++.+..+.++.+.. ...+.+..|..
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~----------~gi~y~~idi~~~~~--------------------~~~~~~~~g~~ 56 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE----------KGYDFEEIPLGNDAR--------------------GRSLRAVTGAT 56 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH----------cCCCcEEEECCCChH--------------------HHHHHHHHCCC
Confidence 334567899999999998877753 233444455554421 13455567889
Q ss_pred ccceEEEECCCCcEE
Q 016404 283 GIPALVLIGPDGKTI 297 (390)
Q Consensus 283 ~~P~~~lid~~G~v~ 297 (390)
.+|.++ + +|+.+
T Consensus 57 ~vP~i~-i--~g~~i 68 (79)
T TIGR02190 57 TVPQVF-I--GGKLI 68 (79)
T ss_pred CcCeEE-E--CCEEE
Confidence 999986 4 45543
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.052 Score=45.10 Aligned_cols=54 Identities=17% Similarity=0.291 Sum_probs=41.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~ 89 (390)
+.+..-.++++|+.|+...||+|.++.+.+.++.+++-+.+ ++.+++..+....
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~~~ 58 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPLDK 58 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSSSH
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEccccc
Confidence 55666678999999999999999999999999999982221 3888888775443
|
... |
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.093 Score=38.15 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=34.0
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH-HhcCcCCCC
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR-IRYRVDRIP 124 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v~~~P 124 (390)
+..|.-++||+|.+....|. ..| ++...+.++.++.. . ..+.. +..|.+++|
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g--~~~~~i~~~~~~~~-----------------~-~~~~~~~~~g~~tvP 55 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKG--VDYEEIDVDDDEPE-----------------E-AREMVKRGKGQRTVP 55 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcC--CCcEEEEecCCcHH-----------------H-HHHHHHHhCCCCCcC
Confidence 56678899999998766555 345 44555555433310 0 12333 333889999
Q ss_pred eEEEE
Q 016404 125 SLIPL 129 (390)
Q Consensus 125 ~~~~~ 129 (390)
.+++=
T Consensus 56 ~I~i~ 60 (80)
T COG0695 56 QIFIG 60 (80)
T ss_pred EEEEC
Confidence 97763
|
|
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.023 Score=51.37 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=49.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++.+|||.||-+.++.|..+...|..|+.+|.. +.++-|... . ..+...|..
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~--~----------------------~~~~~~f~~ 196 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRAS--K----------------------CPASENFPD 196 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEEC--G----------------------CCTTTTS-T
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehh--c----------------------cCcccCCcc
Confidence 456999999999999999999999999999987 345554432 1 013466889
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
..+|+++++. +|.++.
T Consensus 197 ~~LPtllvYk-~G~l~~ 212 (265)
T PF02114_consen 197 KNLPTLLVYK-NGDLIG 212 (265)
T ss_dssp TC-SEEEEEE-TTEEEE
T ss_pred cCCCEEEEEE-CCEEEE
Confidence 9999999996 887764
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.034 Score=42.29 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=16.3
Q ss_pred EEEEccCCCcccHhhHHHHHH
Q 016404 206 GLYFGAHWCPPCRSFTSQLIE 226 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~ 226 (390)
++.|..+|||+|.+....|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~ 30 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT 30 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 455889999999987766644
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.042 Score=45.09 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=27.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhh
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELK 232 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~ 232 (390)
++++|+.|+.++||+|+.+.|.+.++..++.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 5889999999999999999999998877653
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >cd02337 ZZ_CBP Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.0082 Score=37.36 Aligned_cols=30 Identities=37% Similarity=0.845 Sum_probs=24.9
Q ss_pred eeecccCCCCceEEEEcCCCC-CCCccccccc
Q 016404 355 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEG 385 (390)
Q Consensus 355 ~iC~~C~e~g~~~~~~~~~~~-~~~~~~~~~~ 385 (390)
|.|+.|... .|-+|+|.+|. |||...|-..
T Consensus 1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 1 YTCNECKHH-VETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred CcCCCCCCc-CCCceECCCCcchhhHHHHhCC
Confidence 569999884 46999999995 9999999643
|
Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.1 Score=37.03 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=34.4
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc-cc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-GI 284 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~ 284 (390)
+..|+.+||++|......|++. ++.+..+.++.+.+. ...+.+..+.. ++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~----------~i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~v 52 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK----------GVDYEEIDVDGDPAL-------------------REEMINRSGGRRTV 52 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC----------CCcEEEEECCCCHHH-------------------HHHHHHHhCCCCcc
Confidence 4568899999999887777542 234455555544211 23455556666 88
Q ss_pred ceEEEE
Q 016404 285 PALVLI 290 (390)
Q Consensus 285 P~~~li 290 (390)
|.+ ++
T Consensus 53 P~v-~i 57 (75)
T cd03418 53 PQI-FI 57 (75)
T ss_pred CEE-EE
Confidence 976 45
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.16 Score=38.78 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=52.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
.++++|+=-++.|+........|++.++... +++.+..+.+-... +....+++.|||
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~----~~~~~y~l~v~~~R-------------------~vSn~IAe~~~V 75 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESP----DEIPVYYLDVIEYR-------------------PVSNAIAEDFGV 75 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCC----ccceEEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence 3788887789999999998888888888765 33778888775432 125789999999
Q ss_pred c-ccceEEEECCCCcEEeeC
Q 016404 282 K-GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 282 ~-~~P~~~lid~~G~v~~~~ 300 (390)
. .-|-++|| ++|++++..
T Consensus 76 ~HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 76 KHESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp ---SSEEEEE-ETTEEEEEE
T ss_pred CcCCCcEEEE-ECCEEEEEC
Confidence 7 46999999 899998863
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.043 Score=55.62 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=45.7
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
+.++..+-.|.+++||+|......+++++.... + ++.-.|... . ..+++++|+
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~--i~~~~i~~~--~---------------------~~~~~~~~~ 526 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--N--VEAEMIDVS--H---------------------FPDLKDEYG 526 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--C--ceEEEEECc--c---------------------cHHHHHhCC
Confidence 455555667789999999988888888877643 2 445444433 2 268899999
Q ss_pred cCCCCeEEE
Q 016404 120 VDRIPSLIP 128 (390)
Q Consensus 120 v~~~P~~~~ 128 (390)
|.++|++++
T Consensus 527 v~~vP~~~i 535 (555)
T TIGR03143 527 IMSVPAIVV 535 (555)
T ss_pred ceecCEEEE
Confidence 999999876
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.022 Score=41.22 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=34.2
Q ss_pred EEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccce
Q 016404 207 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 286 (390)
Q Consensus 207 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 286 (390)
..|+.+|||+|......|++. ++.+-.+.++.+.+. ..++.+..|..++|+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~----------~i~~~~~di~~~~~~-------------------~~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK----------GVTFTEIRVDGDPAL-------------------RDEMMQRSGRRTVPQ 52 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc----------CCCcEEEEecCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 568899999999888777643 223334444443311 234555567888999
Q ss_pred EEEE
Q 016404 287 LVLI 290 (390)
Q Consensus 287 ~~li 290 (390)
+ ++
T Consensus 53 i-~i 55 (79)
T TIGR02181 53 I-FI 55 (79)
T ss_pred E-EE
Confidence 6 45
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.19 Score=39.15 Aligned_cols=64 Identities=11% Similarity=0.286 Sum_probs=53.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
..|.|+|-|.-.|-|.|..+-..|.++++++++- ..|..+.+|.- ..+-+.|++
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV-----------------------~~~~~~~~l 75 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV-----------------------PDFVKMYEL 75 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh-----------------------hhhhhhhcc
Confidence 4689999999999999999999999999999875 45666666622 467788999
Q ss_pred CCCCeEEEEc
Q 016404 121 DRIPSLIPLA 130 (390)
Q Consensus 121 ~~~P~~~~~d 130 (390)
...|++++|=
T Consensus 76 ~~p~tvmfFf 85 (142)
T KOG3414|consen 76 YDPPTVMFFF 85 (142)
T ss_pred cCCceEEEEE
Confidence 9999887664
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.14 Score=36.30 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=35.6
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|..+||+.|++....|++ .++.+..+.++.+.+. ..++.+..+-..+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~----------~gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP 53 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE----------KGLPYVEINIDIFPER-------------------KAELEERTGSSVVP 53 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence 346788999999988777764 2344555566654321 34566666777888
Q ss_pred eEEEE
Q 016404 286 ALVLI 290 (390)
Q Consensus 286 ~~~li 290 (390)
.+ ++
T Consensus 54 ~v-~i 57 (73)
T cd03027 54 QI-FF 57 (73)
T ss_pred EE-EE
Confidence 86 44
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.19 Score=43.82 Aligned_cols=111 Identities=12% Similarity=0.151 Sum_probs=74.2
Q ss_pred eeecCCCccccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCC-cEEEEEEecCCChhHHH-HHHHhCCCcce
Q 016404 27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-ELEVIFISFDHDENGFE-EHFKCMPWLAV 104 (390)
Q Consensus 27 ~l~~~~g~~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~-~~~vv~v~~d~~~~~~~-~~~~~~~~~~~ 104 (390)
....++|.....+..|+++||.+-..+|..|...+..|+.|..++.+.|- ++.++.|+--...+.+. ..++..--..+
T Consensus 11 p~W~i~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~i 90 (238)
T PF04592_consen 11 PPWKIGGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHI 90 (238)
T ss_pred CCceECCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCC
Confidence 34455566555566899999999999999999999999999999988762 45666666433333332 23332222345
Q ss_pred ecC--hhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 105 PFD--ETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 105 ~~~--~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
|+. ......+...++-.. =-++|+|+=|++++.
T Consensus 91 pVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 91 PVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred ceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 552 234466777776553 467889999998754
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.056 Score=54.31 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=46.6
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
+.++.-+..|.+++||+|......+++++.... . ++.-.| |..+. .+++.+|+
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~--i~~~~i--d~~~~---------------------~~~~~~~~ 166 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--N--ITHTMI--DGALF---------------------QDEVEARN 166 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--C--ceEEEE--EchhC---------------------HhHHHhcC
Confidence 456677889999999999998888888877432 2 444444 54443 78889999
Q ss_pred cCCCCeEEE
Q 016404 120 VDRIPSLIP 128 (390)
Q Consensus 120 v~~~P~~~~ 128 (390)
+.++|++++
T Consensus 167 v~~VP~~~i 175 (517)
T PRK15317 167 IMAVPTVFL 175 (517)
T ss_pred CcccCEEEE
Confidence 999999875
|
|
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.013 Score=50.66 Aligned_cols=69 Identities=22% Similarity=0.401 Sum_probs=48.0
Q ss_pred EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc
Q 016404 204 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 283 (390)
Q Consensus 204 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 283 (390)
-+++.|+|+|||.|....|.|...+.--.+ -++.|-.|.+-. +..+.-+|-+..
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~d---L~v~va~VDvt~-----------------------npgLsGRF~vta 94 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLD---LGVKVAKVDVTT-----------------------NPGLSGRFLVTA 94 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCC---CceeEEEEEEEe-----------------------ccccceeeEEEe
Confidence 377889999999999999998776543322 344444443322 234556788899
Q ss_pred cceEEEECCCCcEEee
Q 016404 284 IPALVLIGPDGKTIST 299 (390)
Q Consensus 284 ~P~~~lid~~G~v~~~ 299 (390)
.|++|=+ ++|.....
T Consensus 95 LptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 95 LPTIYHV-KDGEFRRY 109 (248)
T ss_pred cceEEEe-eccccccc
Confidence 9999988 77876543
|
|
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.14 Score=36.18 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=35.2
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|..+|||+|.+....|++ .++.+..+.++.+.. ...+.+..|...+|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----------~~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP 52 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----------NGISYEEIPLGKDIT--------------------GRSLRAVTGAMTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----------cCCCcEEEECCCChh--------------------HHHHHHHhCCCCcC
Confidence 456889999999988776653 223444555554320 13445556888999
Q ss_pred eEEEEC
Q 016404 286 ALVLIG 291 (390)
Q Consensus 286 ~~~lid 291 (390)
.+ ++|
T Consensus 53 ~i-fi~ 57 (72)
T cd03029 53 QV-FID 57 (72)
T ss_pred eE-EEC
Confidence 96 554
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.13 Score=42.73 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=39.5
Q ss_pred eeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC
Q 016404 195 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247 (390)
Q Consensus 195 ~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d 247 (390)
..+.+-.++++|+.|+...||+|..+.+.+.++.+++-+ ...+.++...+-
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~--~~~v~~~~~~~~ 55 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYID--PGKVKFVFRPVP 55 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEESS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC--CCceEEEEEEcc
Confidence 334445568999999999999999999999999999831 267888888763
|
... |
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.19 Score=38.08 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=36.2
Q ss_pred CCCEEEEEEe----cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 41 GGKTICLFFS----ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 41 ~gk~vll~F~----a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
....|+|+-. .+|||+|.+....|.+. + +.+..++++.+.+ ....+.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~--i~~~~~di~~~~~-------------------~~~~l~~ 61 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKAC-------G--VPFAYVNVLEDPE-------------------IRQGIKE 61 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHc-------C--CCEEEEECCCCHH-------------------HHHHHHH
Confidence 3455555544 38999999877655542 3 3355566654432 1245555
Q ss_pred hcCcCCCCeEEE
Q 016404 117 RYRVDRIPSLIP 128 (390)
Q Consensus 117 ~~~v~~~P~~~~ 128 (390)
..|...+|.+++
T Consensus 62 ~tg~~tvP~vfi 73 (97)
T TIGR00365 62 YSNWPTIPQLYV 73 (97)
T ss_pred HhCCCCCCEEEE
Confidence 667788999854
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.21 Score=36.42 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=38.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|..+||++|++....|++ .+ +....++++.+.+ ....+.+..+...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~~-------------------~~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDAA-------------------KREEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCHH-------------------HHHHHHHHhCCCCcCE
Confidence 456778999999987776664 23 4455566665432 1245556667888998
Q ss_pred EEEEcCCCccc
Q 016404 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
+++ +|+.+
T Consensus 56 i~~---~g~~i 63 (83)
T PRK10638 56 IFI---DAQHI 63 (83)
T ss_pred EEE---CCEEE
Confidence 744 35444
|
|
| >KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.019 Score=52.35 Aligned_cols=32 Identities=34% Similarity=0.719 Sum_probs=28.7
Q ss_pred ceeecccCC-CCceEEEEcCCCC-CCCccccccc
Q 016404 354 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG 385 (390)
Q Consensus 354 ~~iC~~C~e-~g~~~~~~~~~~~-~~~~~~~~~~ 385 (390)
.-.||.|.. .-.|-||+|.+|. |||+..|-..
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~ 185 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAG 185 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcC
Confidence 467999999 8899999999998 9999999554
|
|
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.065 Score=45.32 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=34.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEec
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~ 85 (390)
.+++.++.|+...||+|..+.+.+.++.+++..+ +.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcCC
Confidence 5899999999999999999999999999988443 55555543
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.44 Score=42.80 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=68.2
Q ss_pred hccCCceEE-eCCCCeeeecc-cCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH-HHHHH
Q 016404 180 AIEGRDYVL-SRDHRKITVSE-LAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-KEFDL 255 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~-~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-~~~~~ 255 (390)
....|++.. +++|+.+++.+ ++||+.||..+. .|-..|.. .......++|.......+++|-|++-.+. ..+..
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~--sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~ 175 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVD--SWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLV 175 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHH--HHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence 445688887 88888888765 488877665544 33222221 12233445554322237999999986543 12111
Q ss_pred -hh-h----cCC---cccccCCch--HHHHHHHHccccc--cceEEEECCCCcEEee
Q 016404 256 -NH-S----IMP---WLAIPYEDR--ARQDLCRIFNIKG--IPALVLIGPDGKTIST 299 (390)
Q Consensus 256 -~~-~----~~~---~~~~~~~~~--~~~~l~~~~~v~~--~P~~~lid~~G~v~~~ 299 (390)
.. . ..| |-.+-+..+ ....+.+.+++.. +.-+||+|.+|+|+..
T Consensus 176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWa 232 (252)
T PF05176_consen 176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWA 232 (252)
T ss_pred HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeC
Confidence 11 1 112 211111221 2467888888865 5679999999999987
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.082 Score=39.38 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=36.9
Q ss_pred CCCEEEEEEec----CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 41 GGKTICLFFSA----NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 41 ~gk~vll~F~a----~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
++++|+|+--+ +|||+|.+....|.+. + +.+..++++.+.+ ....+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~--i~y~~idv~~~~~-------------------~~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------G--VDFGTFDILEDEE-------------------VRQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------C--CCeEEEEcCCCHH-------------------HHHHHHH
Confidence 45666665433 7999999876655543 2 3355555554432 1256666
Q ss_pred hcCcCCCCeEEE
Q 016404 117 RYRVDRIPSLIP 128 (390)
Q Consensus 117 ~~~v~~~P~~~~ 128 (390)
..|...+|.+++
T Consensus 58 ~~g~~tvP~vfi 69 (90)
T cd03028 58 YSNWPTFPQLYV 69 (90)
T ss_pred HhCCCCCCEEEE
Confidence 678889999743
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.19 Score=38.47 Aligned_cols=63 Identities=24% Similarity=0.465 Sum_probs=36.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+|.|.-+||++|.+....|.+ + + +....+.+|..++ ..+....+.+.-+.+.+|.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~---~--v~~~vvELD~~~~----------------g~eiq~~l~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----L---G--VNPKVVELDEDED----------------GSEIQKALKKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----C---C--CCCEEEEccCCCC----------------cHHHHHHHHHhcCCCCCCE
Confidence 466889999999974443333 2 2 3355556665432 1122244445456678999
Q ss_pred EEEEcCCCccc
Q 016404 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
+|+ +|+.+
T Consensus 71 vFI---~Gk~i 78 (104)
T KOG1752|consen 71 VFI---GGKFI 78 (104)
T ss_pred EEE---CCEEE
Confidence 776 45544
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.31 Score=39.37 Aligned_cols=116 Identities=15% Similarity=0.242 Sum_probs=71.0
Q ss_pred hhccCCceEE-eCCC-------Ceeeeccc-CCcEEEE-EEccCCCcccHh-hHHHHHHHHHHhhcccCCce-EEEEEec
Q 016404 179 LAIEGRDYVL-SRDH-------RKITVSEL-AGKTIGL-YFGAHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVLVST 246 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g-------~~~~l~~~-~gk~vlv-~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~-~vv~v~~ 246 (390)
+|.+.|+.++ ...+ ..++..++ +||-|+| -.-+..-|.|-. .+|.+.++++++++ .++ +|+-|++
T Consensus 5 vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~---kGVD~I~cVSV 81 (165)
T COG0678 5 VGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKA---KGVDEIYCVSV 81 (165)
T ss_pred cCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHH---cCCceEEEEEe
Confidence 5677777776 2211 22333343 6765544 333445666766 79999999999987 333 4555666
Q ss_pred CCC--HHHHHHhhhcCCcccccCCchHHHHHHHHccc-----------cccceEEEECCCCcEEeeC
Q 016404 247 DRD--HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI-----------KGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 247 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~v~~~~ 300 (390)
+.. -.+|.+.....+ .+.+..|.+.++.+.+|. ++.....++ .||.|..-.
T Consensus 82 ND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 82 NDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred CcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 542 255666555442 455555667778777653 556667777 788887664
|
|
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.36 Score=37.69 Aligned_cols=62 Identities=18% Similarity=0.489 Sum_probs=49.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
.|.|+|-|.-.|-|.|..+-..|..+.+...+ =..|..+.+|. -+.+.+.|++
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn----fa~Iylvdide-----------------------V~~~~~~~~l 75 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN----FAVIYLVDIDE-----------------------VPDFVKMYEL 75 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhh----ceEEEEEecch-----------------------hhhhhhhhcc
Confidence 38999999999999999999999999998863 23455555553 3677888999
Q ss_pred cccceEEEE
Q 016404 282 KGIPALVLI 290 (390)
Q Consensus 282 ~~~P~~~li 290 (390)
...|++++|
T Consensus 76 ~~p~tvmfF 84 (142)
T KOG3414|consen 76 YDPPTVMFF 84 (142)
T ss_pred cCCceEEEE
Confidence 999987766
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.28 Score=35.74 Aligned_cols=54 Identities=13% Similarity=0.320 Sum_probs=34.5
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
+..|..+||++|......|.+ .++.+-.+.++.+.+. ....+..|...+|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~----------~gI~~~~idi~~~~~~--------------------~~~~~~~g~~~vP 52 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES----------RGFDFEMINVDRVPEA--------------------AETLRAQGFRQLP 52 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH----------CCCceEEEECCCCHHH--------------------HHHHHHcCCCCcC
Confidence 456889999999987766633 3455666666654321 1222335778999
Q ss_pred eEEE
Q 016404 286 ALVL 289 (390)
Q Consensus 286 ~~~l 289 (390)
++++
T Consensus 53 vv~i 56 (81)
T PRK10329 53 VVIA 56 (81)
T ss_pred EEEE
Confidence 9854
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.22 Score=35.21 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=33.4
Q ss_pred EEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccce
Q 016404 207 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 286 (390)
Q Consensus 207 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 286 (390)
..|..++|++|+.....|.+ .++.+-.+.++.+.+. ...+ +..|...+|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~----------~~i~~~~~di~~~~~~-------------------~~~~-~~~g~~~vP~ 51 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE----------HGIAFEEINIDEQPEA-------------------IDYV-KAQGFRQVPV 51 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHH-HHcCCcccCE
Confidence 46788999999988877753 2344555666654321 1223 2347888999
Q ss_pred EEE
Q 016404 287 LVL 289 (390)
Q Consensus 287 ~~l 289 (390)
+++
T Consensus 52 v~~ 54 (72)
T TIGR02194 52 IVA 54 (72)
T ss_pred EEE
Confidence 644
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.076 Score=39.57 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=35.3
Q ss_pred CcEEEEEEcc----CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 202 GKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 202 gk~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
+++|+|+--+ +|||+|.+....|.+.. +.+..+.++.+.+ ....+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~----------i~y~~idv~~~~~-------------------~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG----------VDFGTFDILEDEE-------------------VRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC----------CCeEEEEcCCCHH-------------------HHHHHHH
Confidence 4556664332 79999998777665542 2333444443321 1345666
Q ss_pred HccccccceEEEEC
Q 016404 278 IFNIKGIPALVLIG 291 (390)
Q Consensus 278 ~~~v~~~P~~~lid 291 (390)
..|...+|.+ ++|
T Consensus 58 ~~g~~tvP~v-fi~ 70 (90)
T cd03028 58 YSNWPTFPQL-YVN 70 (90)
T ss_pred HhCCCCCCEE-EEC
Confidence 6788889997 453
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.096 Score=38.27 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=37.1
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
+..|..+||++|++....|++. ++....+.++.+.+ ....+.+..|...+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~----------gi~y~~~dv~~~~~-------------------~~~~l~~~~g~~~vP 54 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK----------GVSFQEIPIDGDAA-------------------KREEMIKRSGRTTVP 54 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHH-------------------HHHHHHHHhCCCCcC
Confidence 4567789999999887777643 23344455554321 124455666788899
Q ss_pred eEEEECCCCcEE
Q 016404 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
.++ + +|+.+
T Consensus 55 ~i~-~--~g~~i 63 (83)
T PRK10638 55 QIF-I--DAQHI 63 (83)
T ss_pred EEE-E--CCEEE
Confidence 774 4 35554
|
|
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.18 Score=43.35 Aligned_cols=94 Identities=23% Similarity=0.437 Sum_probs=65.4
Q ss_pred CCceEEeCCCCeeeeccc-CCcEEEEE---E----ccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016404 183 GRDYVLSRDHRKITVSEL-AGKTIGLY---F----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 183 ~p~f~l~~~g~~~~l~~~-~gk~vlv~---F----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
..++.++....+.+|+++ .||-.||. + |..-|+.|-..+..+.-....+.. .++.++.|+-- ..+++.
T Consensus 52 ~K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~---~dv~lv~VsRA-Pl~~l~ 127 (247)
T COG4312 52 DKDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEH---HDVTLVAVSRA-PLEELV 127 (247)
T ss_pred cceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhh---cCceEEEEecC-cHHHHH
Confidence 346666444446788876 66644332 2 344699999999888777677765 77888888743 567888
Q ss_pred HhhhcCCcccccCCchHHHHHHHHccc
Q 016404 255 LNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
.+-+.|+|. +|........+-+.|++
T Consensus 128 ~~k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 128 AYKRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HHHHhcCCc-ceeEeccCccccccccc
Confidence 888899998 88766656666666755
|
|
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.36 Score=36.50 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=34.0
Q ss_pred cEEEEEEc----cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 203 KTIGLYFG----AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 203 k~vlv~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
+.|+|+-. .+|||+|.+....|.++ ++.+..+.++.+.+. ...+.+.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------~i~~~~~di~~~~~~-------------------~~~l~~~ 62 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------GVPFAYVNVLEDPEI-------------------RQGIKEY 62 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc----------CCCEEEEECCCCHHH-------------------HHHHHHH
Confidence 44555443 38999999877666553 223444455443211 2445556
Q ss_pred ccccccceEEEE
Q 016404 279 FNIKGIPALVLI 290 (390)
Q Consensus 279 ~~v~~~P~~~li 290 (390)
.|...+|.++ |
T Consensus 63 tg~~tvP~vf-i 73 (97)
T TIGR00365 63 SNWPTIPQLY-V 73 (97)
T ss_pred hCCCCCCEEE-E
Confidence 6777889875 5
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.052 Score=35.92 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=26.9
Q ss_pred CCceeecccCCCC---ceEEEEcCCCCCCCccccccc
Q 016404 352 AKAYVCDCCKMRG---RFWAFSCDVCNYDLHPKCVEG 385 (390)
Q Consensus 352 ~~~~iC~~C~e~g---~~~~~~~~~~~~~~~~~~~~~ 385 (390)
..+-.|+.|++.- ....|+|..|++..|.+|...
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 4567899999965 555999999999999999764
|
Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A .... |
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.14 Score=43.36 Aligned_cols=95 Identities=13% Similarity=0.309 Sum_probs=68.3
Q ss_pred CCcchhhhhhccCcceeecCCCc--cccCccCCCE-EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC
Q 016404 12 DSSDFLTVLASEGVEFLLSRQGK--VPLSSCGGKT-ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~~~g~--~~l~~~~gk~-vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~ 88 (390)
+..+|...+.....+.+...+.. ..+.. .+++ +++.|..............+.+++++++++ +.++.+..+
T Consensus 63 ~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~-- 136 (184)
T PF13848_consen 63 TPEELKKFIKKNSFPLVPELTPENFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDAD-- 136 (184)
T ss_dssp SHHHHHHHHHHHSSTSCEEESTTHHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETT--
T ss_pred CHHHHHHHHHHhccccccccchhhHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehH--
Confidence 44568888888888888888887 33433 4544 777777666667788888888888888765 455555444
Q ss_pred hhHHHHHHHhCCCcceecChhHHHHHHHhcCcC--CCCeEEEEcCCC
Q 016404 89 ENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD--RIPSLIPLASDG 133 (390)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~~~d~~G 133 (390)
.. ..+.+.||+. .+|++++++.+.
T Consensus 137 ~~---------------------~~~~~~~~i~~~~~P~~vi~~~~~ 162 (184)
T PF13848_consen 137 DF---------------------PRLLKYFGIDEDDLPALVIFDSNK 162 (184)
T ss_dssp TT---------------------HHHHHHTTTTTSSSSEEEEEETTT
T ss_pred Hh---------------------HHHHHHcCCCCccCCEEEEEECCC
Confidence 32 5677889997 899999999544
|
... |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.14 Score=51.34 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=46.4
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 39 ~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
.+.++.-+..|.++.||+|......+++++.... + ++.-. +|..+. .+++.+|
T Consensus 114 ~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~--i~~~~--id~~~~---------------------~~~~~~~ 166 (515)
T TIGR03140 114 RLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--N--ISHTM--IDGALF---------------------QDEVEAL 166 (515)
T ss_pred hcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--C--ceEEE--EEchhC---------------------HHHHHhc
Confidence 3456777889999999999988888877766533 1 44333 444432 6888999
Q ss_pred CcCCCCeEEE
Q 016404 119 RVDRIPSLIP 128 (390)
Q Consensus 119 ~v~~~P~~~~ 128 (390)
++.++|++++
T Consensus 167 ~v~~VP~~~i 176 (515)
T TIGR03140 167 GIQGVPAVFL 176 (515)
T ss_pred CCcccCEEEE
Confidence 9999999876
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.014 Score=50.50 Aligned_cols=66 Identities=23% Similarity=0.485 Sum_probs=47.2
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCC
Q 016404 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124 (390)
Q Consensus 45 vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 124 (390)
+++.|+++|||-|....|.|...+.--.+-+ +.|-.|.+..+ .-+.-+|-++..|
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~n-----------------------pgLsGRF~vtaLp 96 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTN-----------------------PGLSGRFLVTALP 96 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEec-----------------------cccceeeEEEecc
Confidence 4788999999999999999988777544444 44444433211 3555678889999
Q ss_pred eEEEEcCCCccc
Q 016404 125 SLIPLASDGTLI 136 (390)
Q Consensus 125 ~~~~~d~~G~i~ 136 (390)
+++=+. +|...
T Consensus 97 tIYHvk-DGeFr 107 (248)
T KOG0913|consen 97 TIYHVK-DGEFR 107 (248)
T ss_pred eEEEee-ccccc
Confidence 999774 78665
|
|
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.17 Score=43.38 Aligned_cols=89 Identities=17% Similarity=0.316 Sum_probs=62.9
Q ss_pred eecCCCccccCcc-CCC--EEEEEE-ecC----CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC
Q 016404 28 LLSRQGKVPLSSC-GGK--TICLFF-SAN----WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 28 l~~~~g~~~l~~~-~gk--~vll~F-~a~----~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 99 (390)
+-..+|+.+|+++ .|+ .++--| ++| .|+.|...+-.+......+...+ +.+++|+-- ..+.+..|.+.|
T Consensus 57 Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~~~k~rm 133 (247)
T COG4312 57 FETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELVAYKRRM 133 (247)
T ss_pred eecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHHHHHHhc
Confidence 4566777888886 565 333322 344 69999999999988888887776 778888754 455688899999
Q ss_pred CCcceecChhHHHHHHHhcCc
Q 016404 100 PWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v 120 (390)
+|. +|+.......+-..|++
T Consensus 134 GW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 134 GWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred CCc-ceeEeccCccccccccc
Confidence 998 77755544555566655
|
|
| >KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7 | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.047 Score=35.98 Aligned_cols=26 Identities=27% Similarity=0.686 Sum_probs=21.4
Q ss_pred ceeecccCCCC---ceEEEEcCCCCCCCc
Q 016404 354 AYVCDCCKMRG---RFWAFSCDVCNYDLH 379 (390)
Q Consensus 354 ~~iC~~C~e~g---~~~~~~~~~~~~~~~ 379 (390)
.|+|.+|+..- .+=+.+|.+|+|.+-
T Consensus 20 iYiCgdC~~en~lk~~D~irCReCG~RIl 48 (62)
T KOG3507|consen 20 IYICGDCGQENTLKRGDVIRCRECGYRIL 48 (62)
T ss_pred EEEeccccccccccCCCcEehhhcchHHH
Confidence 69999999844 566899999999763
|
0 [Transcription] |
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.19 Score=42.34 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=33.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEe
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS 245 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~ 245 (390)
.++++|+.|+...||+|+.+.+.+..+.++++ .++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~----~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP----KDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC----CCceEEEcC
Confidence 46899999999999999999999999999885 445554444
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.41 Score=37.36 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=37.4
Q ss_pred CCCEEEEEEec----CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 41 GGKTICLFFSA----NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 41 ~gk~vll~F~a----~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
....|+|+--+ ||||+|.+....|.++ + ++.-.+.++.+.+ . ...+.+
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~--i~~~~idi~~d~~-~------------------~~~l~~ 64 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC-------G--ERFAYVDILQNPD-I------------------RAELPK 64 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHc-------C--CCceEEEecCCHH-H------------------HHHHHH
Confidence 34555555443 6999999877665553 2 2233455554432 1 134444
Q ss_pred hcCcCCCCeEEEEcCCCccc
Q 016404 117 RYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~ 136 (390)
.-|-..+|.+++ +|+.+
T Consensus 65 ~sg~~TVPQIFI---~G~~I 81 (115)
T PRK10824 65 YANWPTFPQLWV---DGELV 81 (115)
T ss_pred HhCCCCCCeEEE---CCEEE
Confidence 457788999776 45444
|
|
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.29 Score=41.29 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=53.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
..-||+.||-+.-..|+-+-..|..|+..+-. ..++-|+... ..-++.+++|
T Consensus 84 S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-----TrFikvnae~-----------------------~PFlv~kL~I 135 (211)
T KOG1672|consen 84 SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-----TRFIKVNAEK-----------------------APFLVTKLNI 135 (211)
T ss_pred CceEEEEEEcCCCcceehHHHHHHHHHHhccc-----ceEEEEeccc-----------------------Cceeeeeeee
Confidence 45689999999888999999999999988743 3455555443 2567788999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.-+|++.++ ++|+.+.+
T Consensus 136 kVLP~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDY 152 (211)
T ss_pred eEeeeEEEE-EcCEEEEE
Confidence 999999999 66665544
|
|
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=91.59 E-value=2.3 Score=33.70 Aligned_cols=43 Identities=12% Similarity=0.400 Sum_probs=36.7
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
+.|.|+|-|.-.|=+.|..+-..|.++++++++- ..|..+.++
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcc
Confidence 5799999999999999999999999999999875 556666666
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >cd00029 C1 Protein kinase C conserved region 1 (C1) | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.11 Score=33.64 Aligned_cols=34 Identities=26% Similarity=0.621 Sum_probs=28.0
Q ss_pred CceeecccCCCCce---EEEEcCCCCCCCcccccccc
Q 016404 353 KAYVCDCCKMRGRF---WAFSCDVCNYDLHPKCVEGI 386 (390)
Q Consensus 353 ~~~iC~~C~e~g~~---~~~~~~~~~~~~~~~~~~~~ 386 (390)
.+..|..|.+.-.+ ..|.|..|++-.|.+|+...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v 46 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV 46 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccC
Confidence 45569999995554 79999999999999998753
|
Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis). |
| >KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.84 Score=34.91 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=34.6
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
+|.|.-+||++|.+....|. .+. ....|+-+.-+.+..+++ ..+.+.-+.+.+|
T Consensus 16 VVifSKs~C~~c~~~k~ll~----~~~----v~~~vvELD~~~~g~eiq------------------~~l~~~tg~~tvP 69 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLS----DLG----VNPKVVELDEDEDGSEIQ------------------KALKKLTGQRTVP 69 (104)
T ss_pred EEEEECCcCchHHHHHHHHH----hCC----CCCEEEEccCCCCcHHHH------------------HHHHHhcCCCCCC
Confidence 34589999999998443333 333 344555554443332322 3333444556788
Q ss_pred eEEEECCCCcEE
Q 016404 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
.+|+ +|+-+
T Consensus 70 ~vFI---~Gk~i 78 (104)
T KOG1752|consen 70 NVFI---GGKFI 78 (104)
T ss_pred EEEE---CCEEE
Confidence 8654 35544
|
|
| >COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.31 Score=49.18 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=56.6
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHH---HHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQ---LVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~---l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+.-++|||+|....+||..|.-|... =.++++.+++. +|-|.+|.++. |-.....
T Consensus 36 f~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREER--------------PDvD~~Y 96 (667)
T COG1331 36 FAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREER--------------PDVDSLY 96 (667)
T ss_pred HHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhhc--------------cCHHHHH
Confidence 34445689999999999999999877642 13445555544 89999997663 1111122
Q ss_pred HHHHHhc-CcCCCCeEEEEcCCCcccc
Q 016404 112 KKLRIRY-RVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 112 ~~l~~~~-~v~~~P~~~~~d~~G~i~~ 137 (390)
..+++.. |-.+.|..+++-|+|+...
T Consensus 97 m~~~q~~tG~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 97 MNASQAITGQGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred HHHHHHhccCCCCceeEEECCCCceee
Confidence 3444443 3457999999999998873
|
|
| >COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.4 Score=34.81 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.0
Q ss_pred EEEEccCCCcccHhhHHHHH
Q 016404 206 GLYFGAHWCPPCRSFTSQLI 225 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~ 225 (390)
+..|.-++||+|++....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45678899999998776665
|
|
| >KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.9 Score=38.20 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=58.7
Q ss_pred cccCCcEEEEEEccC----CCcccHhhHHHHHHHHHHhhcc--cCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchH
Q 016404 198 SELAGKTIGLYFGAH----WCPPCRSFTSQLIEVYNELKTT--ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA 271 (390)
Q Consensus 198 ~~~~gk~vlv~F~a~----wC~~C~~~~p~l~~l~~~~~~~--~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 271 (390)
...++=.+++.|.|. -|.-|+.+..+++-+++.+... ..++-++.+-.+|-++
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e--------------------- 114 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE--------------------- 114 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---------------------
Confidence 344555688888875 6999999999999999987653 2233466666666543
Q ss_pred HHHHHHHccccccceEEEECC-CCcEE
Q 016404 272 RQDLCRIFNIKGIPALVLIGP-DGKTI 297 (390)
Q Consensus 272 ~~~l~~~~~v~~~P~~~lid~-~G~v~ 297 (390)
..++.+.+++++.|+++++.| .|+..
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 478889999999999999965 46655
|
|
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.32 Score=42.43 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=31.8
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEe
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFIS 84 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~ 84 (390)
..|++.++.|+...||||..+.+.+ ..+.+.+.++ +.++.+.
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~~ 79 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKYH 79 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEec
Confidence 4688999999999999999999866 6667766544 4455443
|
|
| >PRK10824 glutaredoxin-4; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.45 Score=37.16 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=17.0
Q ss_pred cEEEEEEcc----CCCcccHhhHHHHHHH
Q 016404 203 KTIGLYFGA----HWCPPCRSFTSQLIEV 227 (390)
Q Consensus 203 k~vlv~F~a----~wC~~C~~~~p~l~~l 227 (390)
..|+|+--+ +|||+|++....|.++
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 445554443 6999999877766554
|
|
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.43 Score=40.35 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=55.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+..-|++-||-+.-..|+-+-..|+.++.++ ++.-||.++.... .-++.+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h------~eTrFikvnae~~---------------------PFlv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRH------VETRFIKVNAEKA---------------------PFLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhc------ccceEEEEecccC---------------------ceeeeeeee
Confidence 5678899999998889999999999998876 4467777775443 467789999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.-+|+++++. +|..+
T Consensus 136 kVLP~v~l~k-~g~~~ 150 (211)
T KOG1672|consen 136 KVLPTVALFK-NGKTV 150 (211)
T ss_pred eEeeeEEEEE-cCEEE
Confidence 9999999995 88765
|
|
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.88 Score=33.00 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=41.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|..+.|+-|......|.++... .+ +++..|+++.+ ..+.++|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~--~~l~~vDI~~d-----------------------~~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FP--FELEEVDIDED-----------------------PELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---ST--CEEEEEETTTT-----------------------HHHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cC--ceEEEEECCCC-----------------------HHHHHHhcC-CCCE
Confidence 6788999999999877777665432 22 78999988844 467889995 7898
Q ss_pred EEEEc
Q 016404 126 LIPLA 130 (390)
Q Consensus 126 ~~~~d 130 (390)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 76654
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.99 Score=43.87 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=23.8
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~ 89 (390)
++.|..+|||+|.+....|.+ .| +....|++|.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~g--i~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------ND--IPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CC--CCeEEEECCCCh
Confidence 667899999999976655444 34 445566666444
|
|
| >cd02336 ZZ_RSC8 Zinc finger, ZZ type | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.37 Score=30.60 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=26.8
Q ss_pred eeecccCCCCceEEEEcCCCC-CCCcccccc
Q 016404 355 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 355 ~iC~~C~e~g~~~~~~~~~~~-~~~~~~~~~ 384 (390)
|.|..|...-+.-+|||..+. |||.+.|=.
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~ 31 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQ 31 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHh
Confidence 579999999999999999987 999999944
|
Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding. |
| >COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.2 Score=31.37 Aligned_cols=70 Identities=24% Similarity=0.373 Sum_probs=43.0
Q ss_pred EEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhh---cCCcccccCCchHHHHHHHHccccc
Q 016404 207 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS---IMPWLAIPYEDRARQDLCRIFNIKG 283 (390)
Q Consensus 207 v~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~~ 283 (390)
+.|++..||.|......|..+. -+++.|- +-.+-+.+++|+. +++ .-+-.+.+|--+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~--------v~yd~Ve--It~Sm~NlKrFl~lRDs~~----------~Fd~vk~~gyiG 64 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN--------VDYDFVE--ITESMANLKRFLHLRDSRP----------EFDEVKSNGYIG 64 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC--------CCceeee--hhhhhhhHHHHHhhhccch----------hHHhhhhcCccc
Confidence 5689999999987766665542 2333443 3445556666655 222 123345677889
Q ss_pred cceEEEECCCCcEEe
Q 016404 284 IPALVLIGPDGKTIS 298 (390)
Q Consensus 284 ~P~~~lid~~G~v~~ 298 (390)
+|.+.+ .+|+++.
T Consensus 65 IPall~--~d~~vVl 77 (85)
T COG4545 65 IPALLT--DDGKVVL 77 (85)
T ss_pred ceEEEe--CCCcEEE
Confidence 998654 5777764
|
|
| >COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.3 Score=31.10 Aligned_cols=69 Identities=19% Similarity=0.350 Sum_probs=44.9
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHH---hCCCcceecChhHHHHHHHhcCcCCC
Q 016404 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---CMPWLAVPFDETLHKKLRIRYRVDRI 123 (390)
Q Consensus 47 l~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~~~ 123 (390)
+.|++..||.|-.+...|.++ + +..-+|.+..+-..+++|+. +++ .-.-.+..|.-++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-------~--v~yd~VeIt~Sm~NlKrFl~lRDs~~----------~Fd~vk~~gyiGI 65 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-------N--VDYDFVEITESMANLKRFLHLRDSRP----------EFDEVKSNGYIGI 65 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-------C--CCceeeehhhhhhhHHHHHhhhccch----------hHHhhhhcCcccc
Confidence 568899999998766555443 2 33556666666677888877 222 1123356778899
Q ss_pred CeEEEEcCCCccc
Q 016404 124 PSLIPLASDGTLI 136 (390)
Q Consensus 124 P~~~~~d~~G~i~ 136 (390)
|.+.+= +|+++
T Consensus 66 Pall~~--d~~vV 76 (85)
T COG4545 66 PALLTD--DGKVV 76 (85)
T ss_pred eEEEeC--CCcEE
Confidence 997764 56665
|
|
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=87.42 E-value=3.3 Score=32.83 Aligned_cols=60 Identities=22% Similarity=0.492 Sum_probs=43.8
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
.|+|+|-|.-.|-+.|..+-..|.+++++.+ .-..|..+.++.- +.+-+.|.+
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~----~~a~IY~vDi~~V-----------------------pdfn~~yel 72 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVK----NFAVIYLVDIDEV-----------------------PDFNQMYEL 72 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTT-----------------------HCCHHHTTS
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhh----cceEEEEEEcccc-----------------------hhhhccccc
Confidence 4899999999999999999999999999886 3345566666632 446667888
Q ss_pred cccceEEE
Q 016404 282 KGIPALVL 289 (390)
Q Consensus 282 ~~~P~~~l 289 (390)
. .|.+++
T Consensus 73 ~-dP~tvm 79 (133)
T PF02966_consen 73 Y-DPCTVM 79 (133)
T ss_dssp --SSEEEE
T ss_pred C-CCeEEE
Confidence 7 676443
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.38 E-value=2.2 Score=34.66 Aligned_cols=87 Identities=20% Similarity=0.323 Sum_probs=54.1
Q ss_pred cCCCc--cccCcc-CCCEEEEEEe--cCCChhhhh-hHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc-
Q 016404 30 SRQGK--VPLSSC-GGKTICLFFS--ANWCRPCKT-FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL- 102 (390)
Q Consensus 30 ~~~g~--~~l~~~-~gk~vll~F~--a~~C~~C~~-~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~- 102 (390)
+..|. ++..++ +||.|+| |. +-.-|.|.. ..|.+.+++++++.+|.+ +|+.|++| |.-.+.+|.+..+.-
T Consensus 22 ~~~~~~~~ts~~lf~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD-~I~cVSVN-D~FVm~AWak~~g~~~ 98 (165)
T COG0678 22 TADGWVDVTTDDLFKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKGVD-EIYCVSVN-DAFVMNAWAKSQGGEG 98 (165)
T ss_pred cCCCcccccHHHhcCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcCCc-eEEEEEeC-cHHHHHHHHHhcCCCc
Confidence 44555 555554 6777555 44 334567744 789999999999988733 67777777 444455666654433
Q ss_pred ceecChhHHHHHHHhcC
Q 016404 103 AVPFDETLHKKLRIRYR 119 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~ 119 (390)
.+.+..|.+.++.+..|
T Consensus 99 ~I~fi~Dg~geFTk~~G 115 (165)
T COG0678 99 NIKFIPDGNGEFTKAMG 115 (165)
T ss_pred cEEEecCCCchhhhhcC
Confidence 45555555556666555
|
|
| >smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains) | Back alignment and domain information |
|---|
Probab=87.33 E-value=0.25 Score=31.68 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=27.1
Q ss_pred CceeecccCCCCce--EEEEcCCCCCCCcccccccc
Q 016404 353 KAYVCDCCKMRGRF--WAFSCDVCNYDLHPKCVEGI 386 (390)
Q Consensus 353 ~~~iC~~C~e~g~~--~~~~~~~~~~~~~~~~~~~~ 386 (390)
.+..|..|.+.-.+ -.|+|..|++-.|.+|+...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 10 KPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence 45679999995443 27999999999999998643
|
Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains. |
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=0.74 Score=40.17 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=31.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEe
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVS 245 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~ 245 (390)
.|++.|+.|+.-.||+|..+.+.+ ..+.+.+. .++.++.+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~----~~v~~~~~~ 79 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP----EGTKMTKYH 79 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCC----CCCeEEEec
Confidence 468889999999999999998866 67777776 444454433
|
|
| >KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.47 E-value=4.8 Score=36.83 Aligned_cols=78 Identities=15% Similarity=0.304 Sum_probs=57.8
Q ss_pred CccCCCEEEEEEecC----CChhhhhhHHHHHHHHHHHhhCCCc---EEEEEEecCCChhHHHHHHHhCCCcceecChhH
Q 016404 38 SSCGGKTICLFFSAN----WCRPCKTFTPQLVQLYDTLRTRGTE---LEVIFISFDHDENGFEEHFKCMPWLAVPFDETL 110 (390)
Q Consensus 38 ~~~~gk~vll~F~a~----~C~~C~~~~p~l~~~~~~~~~~~~~---~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 110 (390)
...++-.+++.|.|. .|.-|.....++.-++.-+...+.. -.+.+-.+|-++.
T Consensus 56 ~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-------------------- 115 (331)
T KOG2603|consen 56 PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-------------------- 115 (331)
T ss_pred CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc--------------------
Confidence 445677888889865 5999999888888888877654311 3466666665553
Q ss_pred HHHHHHhcCcCCCCeEEEEcCC-Cccc
Q 016404 111 HKKLRIRYRVDRIPSLIPLASD-GTLI 136 (390)
Q Consensus 111 ~~~l~~~~~v~~~P~~~~~d~~-G~i~ 136 (390)
.++.+++++...|+++++.|. |.+.
T Consensus 116 -p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 116 -PQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred -HHHHHHhcccCCCeEEEeCCCccccc
Confidence 788999999999999999754 4444
|
|
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=86.09 E-value=7.2 Score=31.15 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc--ccceEEEECCCCc
Q 016404 219 SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGK 295 (390)
Q Consensus 219 ~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~ 295 (390)
.....|.+++++|++ ..+.++++..+.. ..+.+.||+. ++|++++++.++.
T Consensus 41 ~~~~~l~~vAk~~kg---k~i~Fv~vd~~~~-----------------------~~~~~~fgl~~~~~P~v~i~~~~~~ 93 (130)
T cd02983 41 KYLEILKSVAEKFKK---KPWGWLWTEAGAQ-----------------------LDLEEALNIGGFGYPAMVAINFRKM 93 (130)
T ss_pred HHHHHHHHHHHHhcC---CcEEEEEEeCccc-----------------------HHHHHHcCCCccCCCEEEEEecccC
Confidence 446788899999984 3377777776653 4488899985 4899999987654
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI | Back alignment and domain information |
|---|
Probab=85.89 E-value=4.2 Score=31.50 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHh-hCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCC----CCeEEEEcC
Q 016404 57 CKTFTPQLVQLYDTLR-TRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDR----IPSLIPLAS 131 (390)
Q Consensus 57 C~~~~p~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~~~d~ 131 (390)
-......+.+++++++ ++ +.+|.+|.+.. ....+.||+.. .|.+.+++.
T Consensus 33 ~~~~~~~~~~vAk~fk~gk-----i~Fv~~D~~~~---------------------~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 33 TNYWRNRVLKVAKDFPDRK-----LNFAVADKEDF---------------------SHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHHHHHHHHHCcCCe-----EEEEEEcHHHH---------------------HHHHHHcCCCcccCCCCEEEEEeC
Confidence 3567788999999998 44 66666664443 34778899974 999999986
Q ss_pred CC
Q 016404 132 DG 133 (390)
Q Consensus 132 ~G 133 (390)
++
T Consensus 87 ~~ 88 (111)
T cd03073 87 KG 88 (111)
T ss_pred CC
Confidence 54
|
They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei |
| >PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long | Back alignment and domain information |
|---|
Probab=85.82 E-value=1.3 Score=34.02 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=21.1
Q ss_pred HHHHHHHccccccceEEEECCCCcEEee
Q 016404 272 RQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 272 ~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
...+..+||+..+|+++++ ++|+.+..
T Consensus 71 e~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 4789999999999999999 55555544
|
This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G. |
| >KOG4301 consensus Beta-dystrobrevin [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=84.83 E-value=0.23 Score=45.40 Aligned_cols=34 Identities=21% Similarity=0.612 Sum_probs=29.6
Q ss_pred CCCceeecccCC-CCceEEEEcCCCC-CCCcccccc
Q 016404 351 MAKAYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 384 (390)
Q Consensus 351 ~~~~~iC~~C~e-~g~~~~~~~~~~~-~~~~~~~~~ 384 (390)
...+..|++|.- .-.|++|+|..|. |.|++.|-.
T Consensus 237 v~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfw 272 (434)
T KOG4301|consen 237 VFHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFW 272 (434)
T ss_pred cCCCccCcceecccccchhhhHhhcCCccccchhhc
Confidence 455678999987 7799999999998 999999965
|
|
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=84.43 E-value=7.5 Score=30.49 Aligned_cols=89 Identities=21% Similarity=0.177 Sum_probs=48.7
Q ss_pred ecccCCcEEEEEEccCC--CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHH
Q 016404 197 VSELAGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 274 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (390)
|++++++.-+|..+|+. -+.=+.....|.+....+.+ .++.++.+.-+..... .-+........
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~e---Rdi~v~~i~~~~~~~~-----------~~~~~~~~~~~ 68 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDE---RDIVVIVITGDGARSP-----------GKPLSPEDIQA 68 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhcccc---CceEEEEEeCCccccc-----------cCcCCHHHHHH
Confidence 45555543333334432 22234445555554445544 7777777744332100 01112223467
Q ss_pred HHHHcccc-ccceEEEECCCCcEEee
Q 016404 275 LCRIFNIK-GIPALVLIGPDGKTIST 299 (390)
Q Consensus 275 l~~~~~v~-~~P~~~lid~~G~v~~~ 299 (390)
+.+.|++. +.-+++||++||.+..+
T Consensus 69 lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 88889875 33678999999999887
|
|
| >PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme | Back alignment and domain information |
|---|
Probab=84.00 E-value=4 Score=31.65 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=11.7
Q ss_pred ceEEEECCCCcEEeeC
Q 016404 285 PALVLIGPDGKTISTN 300 (390)
Q Consensus 285 P~~~lid~~G~v~~~~ 300 (390)
+..+|||++|+|++.+
T Consensus 96 GG~fv~d~~g~v~~~h 111 (115)
T PF13911_consen 96 GGTFVFDPGGKVLYEH 111 (115)
T ss_pred CeEEEEcCCCeEEEEE
Confidence 4478888888887764
|
|
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=83.99 E-value=2.3 Score=30.79 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=41.4
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.|..+.|+-|......|.++... ..+.+..|.++.+ ..+.++|+. .+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~------~~~~l~~vDI~~d-----------------------~~l~~~Y~~-~IP 51 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE------FPFELEEVDIDED-----------------------PELFEKYGY-RIP 51 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT------STCEEEEEETTTT-----------------------HHHHHHSCT-STS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh------cCceEEEEECCCC-----------------------HHHHHHhcC-CCC
Confidence 6778899999999887777665333 4578888988854 568889995 789
Q ss_pred eEEEEC
Q 016404 286 ALVLIG 291 (390)
Q Consensus 286 ~~~lid 291 (390)
.+.+-+
T Consensus 52 Vl~~~~ 57 (81)
T PF05768_consen 52 VLHIDG 57 (81)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 866554
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=83.22 E-value=3.6 Score=32.88 Aligned_cols=67 Identities=9% Similarity=0.258 Sum_probs=44.4
Q ss_pred CCEEEEEEecC--CCh-hh-hhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016404 42 GKTICLFFSAN--WCR-PC-KTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 42 gk~vll~F~a~--~C~-~C-~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
...-+|.|.-. .|. -+ ......|.+++++++++. +.+++++.+ .. ..+.+.
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~--i~Fv~vd~~--~~---------------------~~~~~~ 74 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP--WGWLWTEAG--AQ---------------------LDLEEA 74 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc--EEEEEEeCc--cc---------------------HHHHHH
Confidence 35666777532 232 23 445678999999998765 455555444 32 348888
Q ss_pred cCcC--CCCeEEEEcCCC
Q 016404 118 YRVD--RIPSLIPLASDG 133 (390)
Q Consensus 118 ~~v~--~~P~~~~~d~~G 133 (390)
||+. .+|++++++.++
T Consensus 75 fgl~~~~~P~v~i~~~~~ 92 (130)
T cd02983 75 LNIGGFGYPAMVAINFRK 92 (130)
T ss_pred cCCCccCCCEEEEEeccc
Confidence 9985 599999998654
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=82.61 E-value=1.8 Score=42.10 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.6
Q ss_pred EEEEccCCCcccHhhHHHHHH
Q 016404 206 GLYFGAHWCPPCRSFTSQLIE 226 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~ 226 (390)
|+.|..+|||+|.+....|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 567899999999987666644
|
|
| >cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI | Back alignment and domain information |
|---|
Probab=81.94 E-value=7.4 Score=30.14 Aligned_cols=52 Identities=10% Similarity=0.231 Sum_probs=35.4
Q ss_pred cHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc----cceEEEECC
Q 016404 217 CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG----IPALVLIGP 292 (390)
Q Consensus 217 C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~ 292 (390)
-......+.+++++|++ .+ +.++.+|.+. ...+.+.||+.. .|.+.+++.
T Consensus 33 ~~~~~~~~~~vAk~fk~---gk--i~Fv~~D~~~---------------------~~~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 33 TNYWRNRVLKVAKDFPD---RK--LNFAVADKED---------------------FSHELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHHHHHHHHHCcC---Ce--EEEEEEcHHH---------------------HHHHHHHcCCCcccCCCCEEEEEeC
Confidence 35567788888888871 13 5555555432 234778899974 899999986
Q ss_pred CC
Q 016404 293 DG 294 (390)
Q Consensus 293 ~G 294 (390)
++
T Consensus 87 ~~ 88 (111)
T cd03073 87 KG 88 (111)
T ss_pred CC
Confidence 55
|
They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei |
| >cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs | Back alignment and domain information |
|---|
Probab=80.61 E-value=3.7 Score=28.56 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=35.4
Q ss_pred EEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceE
Q 016404 208 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPAL 287 (390)
Q Consensus 208 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 287 (390)
.|+..||++|.+..-.|.+. + -.++++.+..... ..++.+......+|++
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----g---l~~e~~~v~~~~~----------------------~~~~~~~np~~~vP~L 52 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----G---ITVELREVELKNK----------------------PAEMLAASPKGTVPVL 52 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----C---CCcEEEEeCCCCC----------------------CHHHHHHCCCCCCCEE
Confidence 46789999999876555433 1 4456666655322 1344444556778887
Q ss_pred EEECCCCcEEe
Q 016404 288 VLIGPDGKTIS 298 (390)
Q Consensus 288 ~lid~~G~v~~ 298 (390)
. +.+|..+.
T Consensus 53 ~--~~~g~~l~ 61 (71)
T cd03060 53 V--LGNGTVIE 61 (71)
T ss_pred E--ECCCcEEe
Confidence 4 34566654
|
GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r |
| >KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.61 E-value=5 Score=32.82 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=58.9
Q ss_pred eeeeccc-CCcEEEE-EEccCCCcc-cHhhHHHHHHHHHHhhcccCCce-EEEEEecCCC--HHHHHHhhhcCCcccccC
Q 016404 194 KITVSEL-AGKTIGL-YFGAHWCPP-CRSFTSQLIEVYNELKTTANHCF-EVVLVSTDRD--HKEFDLNHSIMPWLAIPY 267 (390)
Q Consensus 194 ~~~l~~~-~gk~vlv-~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~-~vv~v~~d~~--~~~~~~~~~~~~~~~~~~ 267 (390)
+++++++ +||-++| =.-+..-|. |+...|-+.+-.++++. .++ +|+-|+++.. ...|.+.+.... .+.+
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elks---KGVd~iicvSVnDpFv~~aW~k~~g~~~--~V~f 108 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKS---KGVDEIICVSVNDPFVMKAWAKSLGAND--HVKF 108 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHh---cCCcEEEEEecCcHHHHHHHHhhcCccc--eEEE
Confidence 7788876 6755544 223344556 67889999999999986 444 4556666642 245555543322 2333
Q ss_pred CchHHHHHHHHccc-----------cccceEEEECCCCcEEeeC
Q 016404 268 EDRARQDLCRIFNI-----------KGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 268 ~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~v~~~~ 300 (390)
..|.+.++.+.+|+ ++-...+++ .||+|...+
T Consensus 109 ~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 109 VADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred EecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 44444455544443 333344555 688888775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 390 | ||||
| 1oc9_A | 152 | Tryparedoxin Ii From C.Fasciculata Solved By Mr Len | 1e-21 | ||
| 1o6j_A | 150 | Tryparedoxin Ii From C.Fasciculata Solved By Sulphu | 2e-21 | ||
| 1fg4_A | 149 | Structure Of Tryparedoxin Ii Length = 149 | 2e-21 | ||
| 1o81_A | 152 | Tryparedoxin Ii From C.fasciculata Solved By Sulphu | 2e-21 | ||
| 1okd_A | 154 | Nmr-Structure Of Tryparedoxin 1 Length = 154 | 1e-20 | ||
| 1okd_A | 154 | Nmr-Structure Of Tryparedoxin 1 Length = 154 | 1e-19 | ||
| 1ezk_A | 153 | Crystal Structure Of Recombinant Tryparedoxin I Len | 1e-20 | ||
| 1ezk_A | 153 | Crystal Structure Of Recombinant Tryparedoxin I Len | 1e-19 | ||
| 1qk8_A | 146 | Tryparedoxin-I From Crithidia Fasciculata Length = | 1e-20 | ||
| 1qk8_A | 146 | Tryparedoxin-I From Crithidia Fasciculata Length = | 1e-19 | ||
| 1ewx_A | 146 | Crystal Structure Of Native Tryparedoxin I From Cri | 1e-20 | ||
| 1ewx_A | 146 | Crystal Structure Of Native Tryparedoxin I From Cri | 1e-19 | ||
| 1i5g_A | 144 | Tryparedoxin Ii Complexed With Glutathionylspermidi | 2e-20 | ||
| 1o73_A | 144 | Tryparedoxin From Trypanosoma Brucei Length = 144 | 3e-20 | ||
| 1o73_A | 144 | Tryparedoxin From Trypanosoma Brucei Length = 144 | 5e-19 | ||
| 1o8x_A | 146 | Mutant Tryparedoxin-I Cys43ala Length = 146 | 8e-20 | ||
| 1o8x_A | 146 | Mutant Tryparedoxin-I Cys43ala Length = 146 | 1e-18 | ||
| 2lus_A | 143 | Nmr Structure Of Carcinoscorpius Rotundicauda Thior | 9e-20 | ||
| 3s9f_A | 165 | The Structure Of Tryparedoxin I From Leishmania Maj | 1e-18 | ||
| 1v5n_A | 89 | Solution Structure Of Dc1 Domain Of Pdi-Like Hypoth | 4e-11 | ||
| 1jfu_A | 186 | Crystal Structure Of The Soluble Domain Of Tlpa Fro | 1e-04 | ||
| 2lrn_A | 152 | Solution Structure Of A Thiol:disulfide Interchange | 2e-04 | ||
| 2h1b_A | 143 | Resa E80q Length = 143 | 4e-04 | ||
| 3fk8_A | 133 | The Crystal Structure Of Disulphide Isomerase From | 5e-04 | ||
| 3d6i_A | 112 | Structure Of The Thioredoxin-Like Domain Of Yeast G | 6e-04 |
| >pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152 | Back alignment and structure |
|
| >pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150 | Back alignment and structure |
|
| >pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149 | Back alignment and structure |
|
| >pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152 | Back alignment and structure |
|
| >pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153 | Back alignment and structure |
|
| >pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153 | Back alignment and structure |
|
| >pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146 | Back alignment and structure |
|
| >pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144 | Back alignment and structure |
|
| >pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144 | Back alignment and structure |
|
| >pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144 | Back alignment and structure |
|
| >pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146 | Back alignment and structure |
|
| >pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146 | Back alignment and structure |
|
| >pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143 | Back alignment and structure |
|
| >pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165 | Back alignment and structure |
|
| >pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana Length = 89 | Back alignment and structure |
|
| >pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From Bradyrhizobium Japonicum Length = 186 | Back alignment and structure |
|
| >pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange Protein From Bacteroides Sp. Length = 152 | Back alignment and structure |
|
| >pdb|2H1B|A Chain A, Resa E80q Length = 143 | Back alignment and structure |
|
| >pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella Fastidiosa Temecula1 Length = 133 | Back alignment and structure |
|
| >pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast Glutaredoxin 3 Length = 112 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 5e-43
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 5/150 (3%)
Query: 171 QGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 230
+G + + G L + + L+GKT+ YF A WCPPCR FT QL+E Y +
Sbjct: 17 RGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK 76
Query: 231 LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVL 289
+ FE++L S D + +F+ ++ MPWL+IP+ +R + L + ++++ IP L+
Sbjct: 77 HH--DSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIG 134
Query: 290 IGPD-GKTISTNGK-EMISLYGAKAFPFTE 317
+ D G T++T + + + FP+ +
Sbjct: 135 LNADTGDTVTTRARHALTQDPMGEQFPWRD 164
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-33
Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Query: 12 DSSDFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
S V G L +Q + S GKT+ +FSA+WC PC+ FTPQLV+ Y+
Sbjct: 17 RGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK 76
Query: 71 LRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPL 129
E+I S+D +E+ F ++ MPWL++PF + + + L +Y V+ IP+LI L
Sbjct: 77 HH-DSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGL 135
Query: 130 ASD-GTLIEEDLIGLI-EDYGADAYPFTRK 157
+D G + + +D + +P+ +
Sbjct: 136 NADTGDTVTTRARHALTQDPMGEQFPWRDE 165
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 1e-42
Identities = 55/141 (39%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 180 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 239
VL I + LAGKT+ YF A WCPP R+FT QLI+ Y N F
Sbjct: 6 FFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--F 63
Query: 240 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTI 297
EV+L+S D ++F ++ MPWLA+P+EDR + L F++K IP LV + D G I
Sbjct: 64 EVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNII 123
Query: 298 STNGKEMI-SLYGAKAFPFTE 317
+T + M+ AK FP+
Sbjct: 124 TTQARTMVVKDPEAKDFPWPN 144
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-30
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 21 ASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELE 79
+L + L S GKT+ +FSA+WC P + FTPQL+ Y + E
Sbjct: 6 FFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFE 64
Query: 80 VIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASD-GTLIE 137
V+ IS+D F++++ MPWLA+PF D + L + V IP+L+ + +D G +I
Sbjct: 65 VMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIIT 124
Query: 138 EDLIGLI-EDYGADAYPFT 155
++ +D A +P+
Sbjct: 125 TQARTMVVKDPEAKDFPWP 143
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-40
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 187 VLSRDHRKITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 244
++ ++ ++ +E IG YF AHWCPPCR FT L ++Y+EL + FE++ V
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVD-DSAPFEIIFV 67
Query: 245 STDRDHKEFD--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGK 302
S+DR + + S WLAIPY ++ + I GIPALV++ DG IS NG+
Sbjct: 68 SSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGR 127
Query: 303 EMISLYGAKAF 313
+ G +AF
Sbjct: 128 GEVQSLGPRAF 138
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-33
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 28 LLSRQGK-VPLSSC--GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
L+ + V + I +FSA+WC PC+ FTP L +Y L E+IF+S
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 85 FDHDENGFEEHFKC--MPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIG 142
D E+ ++ WLA+P+ + +Y + IP+L+ + DGTLI + G
Sbjct: 69 SDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG 128
Query: 143 LIEDYGADAY 152
++ G A+
Sbjct: 129 EVQSLGPRAF 138
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-39
Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 188 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247
L R ++ V LAGK + YF A WCPP R FT QLIE Y++ + N FEVV + D
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 248 RDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGK-EM 304
+ F + MPWLA+P+ A Q L + FN++ IP L+ + D G ++T + +
Sbjct: 72 EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Query: 305 ISLYGAKAFPFTES 318
+ + FP+ ++
Sbjct: 132 VKDPEGEQFPWKDA 145
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 9e-33
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 24 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
G+E L G+V + S GK + +FSA+WC P + FTPQL++ YD EV+F
Sbjct: 10 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFC 68
Query: 84 SFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASD-GTLIEEDLI 141
++D +E+GF +F MPWLAVPF +KL + V+ IP+LI + +D G ++
Sbjct: 69 TWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRAR 128
Query: 142 G-LIEDYGADAYPFTRK 157
L++D + +P+
Sbjct: 129 ATLVKDPEGEQFPWKDA 145
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-38
Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 188 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247
L ++++ L GKT+ LYF A WCPPCR FT L E Y + N FEVVL+S D
Sbjct: 14 LLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FEVVLISWD 71
Query: 248 RDHKEFDLNHSIMPWLAIPYEDRARQ-DLCRIFNIKGIPALVLIGPD-GKTISTNGK-EM 304
+ +F + MPWLA+P++ R+ +L + F ++ IP L+ I D G I T + +
Sbjct: 72 ENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131
Query: 305 ISLYGAKAFPFTE 317
I FP+
Sbjct: 132 IEDPDGANFPWPN 144
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-31
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
L + V L S GKT+ L+FSA+WC PC+ FTP L + Y+ EV+ IS+D
Sbjct: 13 NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLISWD 71
Query: 87 HDENGFEEHFKCMPWLAVPFDETLHK-KLRIRYRVDRIPSLIPLASD-GTLIEEDLIG-L 143
+E+ F +++ MPWLA+PFD+ +L + V+ IP+LI + +D G +I +
Sbjct: 72 ENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131
Query: 144 IEDYGADAYPFT 155
IED +P+
Sbjct: 132 IEDPDGANFPWP 143
|
| >1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 5e-23
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 309 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFW 367
G+ TE R+ EIE + P++VK V H EHEL+L + Y CD C+ G W
Sbjct: 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 368 AFSCDVCNYDLHPKCV 383
++ CD C++DLH KC
Sbjct: 61 SYHCDECDFDLHAKCA 76
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-18
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 194 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253
+S L + L+F C CR F E+ ++ N V+ + D + +E+
Sbjct: 19 NSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEW 78
Query: 254 D--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300
+ W+ + + ++++I+ P + L+ + I +
Sbjct: 79 ATKAVYMPQGWI-VGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKD 126
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-13
Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 9/119 (7%)
Query: 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ---LYDTLRTRGTELEVIFI 83
++ G +S + LFF C C+ F + + + L V+ I
Sbjct: 12 YVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAI 69
Query: 84 SFDHDENGFEEHFK--CMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140
D + + W+ V +++ + R Y + P++ L +I +D
Sbjct: 70 YPDENREEWATKAVYMPQGWI-VGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKDT 127
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 8e-18
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250
+ ++ K L+F C C+ T +L + + + + +V + +R
Sbjct: 22 TYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNR---AKGIQVYAANIERKDEE 78
Query: 251 -KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN-GKEMISLY 308
+F + I WL + + + D ++I P L ++ + I+ G E +
Sbjct: 79 WLKFIRSKKIGGWLNV-RDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENL--- 134
Query: 309 GAKAFPFTESRIAEIETALKKE 330
+ + + E +LK +
Sbjct: 135 --------DDFLVQYEKSLKTK 148
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-13
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
L K LFF + C C+ TP+L + R +G ++V + + + +
Sbjct: 23 YRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWL 80
Query: 94 EHFK---CMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140
+ + WL V D H +I Y + P L L + +I + +
Sbjct: 81 KFIRSKKIGGWLNV-RDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRI 129
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-17
Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 20/138 (14%)
Query: 194 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253
K T+ + + L+ C C L TA +V+ + D + E+
Sbjct: 23 KGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEW 82
Query: 254 D--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAK 311
N W Y+ +++++ IP L L+ + + +
Sbjct: 83 KKHRNDFAKEWT-NGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD----------- 130
Query: 312 AFPFTESRIAEIETALKK 329
+ + ++E L +
Sbjct: 131 ------ATLQKVEQYLAE 142
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-13
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGF 92
K L + LF + C C L +L+V+ I D + + +
Sbjct: 23 KGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEW 82
Query: 93 EEHFK--CMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140
++H W +D+ L K + Y + IP+L L + T++ +D
Sbjct: 83 KKHRNDFAKEWTNG-YDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA 131
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 7e-17
Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252
++++L GK + + F + + L E+YN+ + FE+ +S D D
Sbjct: 26 NTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYA---SQGFEIYQISLDGDEHF 82
Query: 253 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300
+ + +PW+ + + A ++N+ +P++ L+ + + +
Sbjct: 83 WKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARG 130
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-13
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
L+ GK + + F+ L +LY+ ++G E+ IS D DE+ ++
Sbjct: 27 TRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWK 84
Query: 94 EHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIG 142
+PW+ V + Y V +PS+ + + L
Sbjct: 85 TSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENI 133
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 5e-15
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252
+++++ GK + + F C CR T L++ YN K + F + VSTDR ++
Sbjct: 20 NSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFK---DKGFTIYGVSTDRREED 76
Query: 253 FD--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300
+ + W + + +D+ + I G P ++L+ P+GK ++
Sbjct: 77 WKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE 126
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-12
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
V L+ GK + + F C C+ TP L++ Y+ + +G + +S D E ++
Sbjct: 21 SVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWK 78
Query: 94 EHFK--CMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIG 142
+ + W V + K + Y + P +I + +G ++ ++L G
Sbjct: 79 KAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRG 129
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 10/134 (7%)
Query: 173 GKLEQLLAIEGR---DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYN 229
GKL + + G + K + G+ L F A + R+ QL N
Sbjct: 1 GKLTEGVNP-GDLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVN 59
Query: 230 ELKTTANHCFEVVLVSTDRD---HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 286
+ + +S D E + +L + ++++
Sbjct: 60 KFG---PDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFK 116
Query: 287 LVLIGPDGKTISTN 300
LI +G I+ N
Sbjct: 117 NFLINDEGVIIAAN 130
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-11
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 7/119 (5%)
Query: 28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87
L K + G+ L F A + + QL + + + IS D
Sbjct: 18 FLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDE 75
Query: 88 DENGFEEHFK--CMPWLAVPFDETLHKKLRI--RYRVDRIPSLIPLASDGTLIEEDLIG 142
E+ F E K + F E L K+ + +Y + + + +G +I ++
Sbjct: 76 KESIFTETVKIDKLDLSTQ-FHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAANVTP 133
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 17/141 (12%)
Query: 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252
+ +++++L GK I + A WC PCR L E+ + V +S D++ K
Sbjct: 21 KTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYA---GKDIHFVSLSCDKNKKA 77
Query: 253 FD--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 310
++ + + I + + I GIP +L+ DGK IS N
Sbjct: 78 WENMVTKDQLKG--IQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISAN-------MTR 128
Query: 311 KAFPFTESRIAEIETALKKEG 331
+ P T + E+ L EG
Sbjct: 129 PSDPKTAEKFNEL---LGLEG 146
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-13
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 30/160 (18%)
Query: 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
GK V L+ GK I + A WC PC+ P L +L + + + + +S D
Sbjct: 15 YPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCD 72
Query: 87 HDENGFEEHFK--CMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLI 144
++ +E + + + + Y ++ IP I L DG +I ++
Sbjct: 73 KNKKAWENMVTKDQLKGIQLHMGTD--RTFMDAYLINGIPRFILLDRDGKIISANMTRPS 130
Query: 145 EDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGR 184
+ + K +LL +EG
Sbjct: 131 D--------------PKTAE---------KFNELLGLEGH 147
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-13
Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 194 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--- 250
+ + + L F A WC P ++L + E K N F ++ +S D D
Sbjct: 25 SRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGISLDIDREAW 82
Query: 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 310
+ + + W + + + + I +P +L+ P GK ++ + + G
Sbjct: 83 ETA-IKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARD------IQG- 134
Query: 311 KAFPFTESRIAEIETALKKE 330
++ E+ LK E
Sbjct: 135 ---EALTGKLKEL---LKTE 148
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 8e-10
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 34 KVPLSSCG--GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91
K+ S+ + + L F A+WC P +L +L + + ++ IS D D
Sbjct: 23 KLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYK-KNKNFAMLGISLDIDREA 81
Query: 92 FEEHFK--CMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIG 142
+E K + W V L + +Y + +P+ I L+ G ++ D+ G
Sbjct: 82 WETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDIQG 134
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-12
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 181 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTS--QLIEVYNELKTTANHC 238
+G S D K K++ + F A W S +L E+Y + K
Sbjct: 19 AKGEKITRSSDAFK-------QKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY-- 69
Query: 239 FEVVLVSTDRDH---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
++ +S D D K+ + + W + ++ + ++I IPA +L+ DGK
Sbjct: 70 IGMLGISLDVDKQQWKDA-IKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGK 128
Query: 296 TISTN 300
++ N
Sbjct: 129 ILAKN 133
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 28 LLSRQGK-VPLSSCG--GKTICLFFSANWCRPC--KTFTPQLVQLYDTLRTRGTELEVIF 82
L + +G+ + SS K++ + F A+W K +L ++Y + + ++
Sbjct: 16 LPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLG 74
Query: 83 ISFDHDENGFEEHFK--CMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140
IS D D+ +++ K + W V L+ ++ +Y + +IP+ I L+SDG ++ ++L
Sbjct: 75 ISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL 134
Query: 141 IG 142
G
Sbjct: 135 RG 136
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 5e-12
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 29/163 (17%)
Query: 179 LAIEGR---DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT 234
++++ + + L + ++ ++L GK + F CP C S ++I+ N+ K
Sbjct: 1 MSLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYK-- 58
Query: 235 ANHCFEVVLVSTDRDHKEFDLNHSIMPWLA---IPYE---DRARQDLCRIFNIKGIPALV 288
N F+V+ V+ D E S+ ++ +P+ D A + + + F + P V
Sbjct: 59 -NKNFQVLAVAQPIDPIE-----SVRQYVKDYGLPFTVMYD-ADKAVGQAFGTQVYPTSV 111
Query: 289 LIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 331
LIG G+ + T G F EI+TA +
Sbjct: 112 LIGKKGEILKTY-------VGEPDFGKLY---QEIDTAWRNSD 144
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-07
Identities = 16/137 (11%), Positives = 49/137 (35%), Gaps = 22/137 (16%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---- 89
V + GK + F C C + P++++ + + + +V+ ++ D
Sbjct: 20 TVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESV 77
Query: 90 NGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI------------E 137
+ + + +P+ V +D K + + P+ + + G ++
Sbjct: 78 RQYVKDYG-LPFT-VMYDAD--KAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLY 133
Query: 138 EDLIGLIEDYGADAYPF 154
+++ + A+ +
Sbjct: 134 QEIDTAWRNSDAEGHHH 150
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 9e-12
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 194 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--- 250
+ +S+ G + L F A WC PCR + ++ + K F+VV V+ D
Sbjct: 20 VVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYK---AKGFQVVAVNLDAKTGDA 76
Query: 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300
+F L + R++ +KG+P LI +GK + +
Sbjct: 77 MKF-LAQVPAEFTVAFDPK---GQTPRLYGVKGMPTSFLIDRNGKVLLQH 122
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 8e-10
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 33 GKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN-- 90
G V LS G + L F A+WC PC+ P + Q+ + +G +V+ ++ D
Sbjct: 19 GVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDA 76
Query: 91 -GFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137
F + V FD + Y V +P+ + +G ++
Sbjct: 77 MKFLAQVP-AEFT-VAFDPK--GQTPRLYGVKGMPTSFLIDRNGKVLL 120
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-11
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252
+ +S+ GKT+ + A WC PCR L E+ +L FEVV ++ D E
Sbjct: 51 KPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS---GPNFEVVAINIDTRDPE 107
Query: 253 ----F--DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMIS 306
F + N + + + + + QDL I G+P VL+ P G I+T
Sbjct: 108 KPKTFLKEANLTRLGYFNDQ-KAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT------- 159
Query: 307 LYGAKAFPFTESRIAEIETALKKEGDAL 334
+ G + +E + I A K AL
Sbjct: 160 IAGPAEWA-SEDALKLIRAATGKAAAAL 186
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 10/130 (7%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---- 89
LS GKT+ + A WC PC+ P L +L L EV+ I+ D +
Sbjct: 52 PKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKP 109
Query: 90 NGFEEHFKCMPWLAVPFDE--TLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDY 147
F + + L D+ + + L+ R +P+ + + G I + G E
Sbjct: 110 KTFLKEAN-LTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT-IAGPAEWA 167
Query: 148 GADAYPFTRK 157
DA R
Sbjct: 168 SEDALKLIRA 177
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-11
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 20/117 (17%)
Query: 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTS-QLIEVYNELKTTANHCFEVVLVSTDRDH- 250
+T+++L GK I + CP C +V V+ + T +H
Sbjct: 19 TDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFP---EDKVAVLGLHTVFEHH 75
Query: 251 ------------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
E+ + P D A + ++G P+L+LI G
Sbjct: 76 EAMTPISLKAFLHEYRIKF---PVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGD 129
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 13/120 (10%)
Query: 28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFT-PQLVQLYDTLRTRGTELEVIFISFD 86
+ + L+ GK I + C C P ++ + V+ +
Sbjct: 14 WFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTV 71
Query: 87 HDENGFEEHFKCMPWLA-------VPFD---ETLHKKLRIRYRVDRIPSLIPLASDGTLI 136
+ + +L V D + + Y++ PSL+ + G L
Sbjct: 72 FEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLR 131
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 2e-11
Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 19/162 (11%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
++ I + L GK + + F A+ C C+ ++ Y K + V+ V T
Sbjct: 71 GNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYK---DSGLAVIGVHTPEYA 127
Query: 251 KEFDLNHSIMPWLA---IPY---EDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEM 304
E ++ A I Y D + + PA LI G
Sbjct: 128 FEKVPG-NVAKGAANLGISYPIALDN-NYATWTNYRNRYWPAEYLIDATGTVRHI----- 180
Query: 305 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHE 346
+G + TE+ + ++ K G LP+ +
Sbjct: 181 --KFGEGDYNVTETLVRQL-LNDAKPGVKLPQPSSTTTPDLT 219
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 9e-04
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 13/123 (10%)
Query: 22 SEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEV 80
+L + K + L S GK + + F A C C+ P +V Y + G L V
Sbjct: 61 KGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAV 118
Query: 81 IFI-----SFDHDENGFEEHFK--CMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDG 133
I + +F+ + + + + D YR P+ + + G
Sbjct: 119 IGVHTPEYAFEKVPGNVAKGAANLGISY-PIALDNN--YATWTNYRNRYWPAEYLIDATG 175
Query: 134 TLI 136
T+
Sbjct: 176 TVR 178
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 2e-11
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 22/120 (18%)
Query: 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252
I+++ + G + L+F A WCP C L + + + V+ +
Sbjct: 28 EVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYRE-----ISVIAIDFWTAEAL 82
Query: 253 FDLNHSIMPWLAIPYEDRARQ-----------------DLCRIFNIKGIPALVLIGPDGK 295
L + + + R+ L FN++ I +V++
Sbjct: 83 KALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSN 142
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
+ L++ GG + L+F A WC C L +L + R E+ VI I F E
Sbjct: 29 VISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR----EISVIAIDFWTAEALKA 84
Query: 94 EHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYP 153
+ E K + PS I + DG+ L+E + +
Sbjct: 85 LGLNKPGYPPPDTPEMFRKFIANY----GDPSWIMVMDDGS--------LVEKFNVRSID 132
Query: 154 FT 155
+
Sbjct: 133 YI 134
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-11
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 21/146 (14%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
+ ++I +S+L GK + L F WC PC+ + Y K + E+V V+
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFK---SQGVEIVAVNVGESK 71
Query: 251 ---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL 307
F + + + + D + + +++ +P LI P+GK + +
Sbjct: 72 IAVHNF-MKSYGVNFPVVLDTD---RQVLDAYDVSPLPTTFLINPEGKVVKV-------V 120
Query: 308 YGAKAFPFTESRIAEIETALKKEGDA 333
G TES I + +K +
Sbjct: 121 TG----TMTESMIHDYMNLIKPGETS 142
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 25/142 (17%), Positives = 58/142 (40%), Gaps = 19/142 (13%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-- 91
++ LS GK + L F WC PCK P + Y +++G +E++ ++ +
Sbjct: 18 RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVH 75
Query: 92 -FEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGAD 150
F + + + + V D +++ Y V +P+ + +G +++ + G + +
Sbjct: 76 NFMKSYG-VNFP-VVLDTD--RQVLDAYDVSPLPTTFLINPEGKVVKV-VTGTMTE---- 126
Query: 151 AYPFTRKRREELKAIDDSKRQG 172
+ + I + G
Sbjct: 127 -----SMIHDYMNLIKPGETSG 143
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-11
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
++++ GK + + F A WCP CR + + V+ V+ ++
Sbjct: 30 SGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFP---KGDLVVLAVNVEKRF 86
Query: 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
E + + + D + + + +P ++ G
Sbjct: 87 PEK-YRRAPVSFNF--LSDA-TGQVQQRYGANRLPDTFIVDRKGI 127
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 17/131 (12%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
L+ GK + + F A+WC C+ P + +L + L V+ ++ +
Sbjct: 33 NKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKRFPEKY 90
Query: 94 EHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI----------EEDLIGL 143
D T +++ RY +R+P + G + ++
Sbjct: 91 RRAP--VSFNFLSDAT--GQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSY 146
Query: 144 IEDY-GADAYP 153
++ G +
Sbjct: 147 LKSLEGHHHHH 157
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 6e-11
Identities = 18/119 (15%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTS-QLIEVYNELKTTANHCFEVVLVSTDRD 249
+H ++ +L GK + + CP C + Q +++ + +V+ + + +
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMID---ESQVQVIGLHSVFE 75
Query: 250 H-------------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
H EF + + + +P E + + + ++G P+++L G+
Sbjct: 76 HHDVMTPEALKVFIDEFGIKFPVA--VDMPREGQRIPSTMKKYRLEGTPSIILADRKGR 132
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 7e-07
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFT-PQLVQLYDTLRTRGTELEVIFISFDHDENGF 92
+ GK + + C C PQ +++ + ++VI + F
Sbjct: 22 GLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSV-----F 74
Query: 93 EEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAY 152
E H P F + + I++ P+A D + + ++ Y +
Sbjct: 75 EHHDVMTPEALKVFID----EFGIKF---------PVAVDMPREGQRIPSTMKKYRLEGT 121
Query: 153 PFT 155
P
Sbjct: 122 PSI 124
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 6e-11
Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 27/165 (16%)
Query: 179 LAIEGR---DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT 234
+++E D+ L + + + +S+L G+ + + F A WCPPCR ++ + +
Sbjct: 1 MSLEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMA-- 58
Query: 235 ANHCFEVVLVSTDRDHKEFDLNHSIMPWLA---IPYE---DRARQDLCRIFNIKGIPALV 288
F ++ VS D K ++ + D A + + +++ G+P
Sbjct: 59 -GKPFRMLCVSIDEGGKV-----AVEEFFRKTGFTLPVLLD-ADKRVGKLYGTTGVPETF 111
Query: 289 LIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA 333
+I G + + GA + E IA + L K +
Sbjct: 112 VIDRHGVILKK-------VVGAMEWDHPEV-IAFLNNELSKAREG 148
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-07
Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 20/139 (14%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE---- 89
V LS G+ + + F A WC PC+ P +++L + + ++ +S D
Sbjct: 20 VVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVAV 77
Query: 90 NGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI----------EED 139
F V D K++ Y +P + G ++ +
Sbjct: 78 EEFFRKTG-FTL-PVLLDAD--KRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPE 133
Query: 140 LIGLIEDYGADAYPFTRKR 158
+I + + + A
Sbjct: 134 VIAFLNNELSKAREGHHHH 152
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 8e-11
Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 6/120 (5%)
Query: 179 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHC 238
+++ + +D+ ++ L + A WC PCR + + Y K
Sbjct: 1 MSLSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQK---KGS 57
Query: 239 FEVVLVSTDRDH--KEFDLNHSI-MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
++V ++ D F + P + + +P V+ P
Sbjct: 58 VDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG 117
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-08
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 14/132 (10%)
Query: 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
E + L S + A WC PC+ P + + Y + ++++ I+
Sbjct: 7 ELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIA 64
Query: 85 FDHDEN--GFEEHFKC-MPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI----- 136
D +N F + P + + V +P + A
Sbjct: 65 LDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITG 124
Query: 137 ---EEDLIGLIE 145
E+ L ++
Sbjct: 125 EVNEKSLTDAVK 136
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
D + + + L GK + F A WCPPCRS +++V + F V ++ +
Sbjct: 23 DGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWA---SRGFTFVGIAVNEQL 79
Query: 251 ---KEFDLNHSI-MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
K + I P + E + I GIP +I G
Sbjct: 80 PNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGN 128
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-07
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
++ GK +S GK + F A WC PC++ P +VQ+ T +RG + I+ +
Sbjct: 19 GVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVN 76
Query: 87 HDENG---FEEHFKCMPWLAV--PFDETLHKKLRIRYRVDRIPSLIPLASDGTLI----- 136
+ + + + + + I + IP+ + + G +
Sbjct: 77 EQLPNVKNYMKTQG-IIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVG 135
Query: 137 ---EEDLIGLIE 145
+ D +++
Sbjct: 136 PRSKADFDRIVK 147
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-10
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
D + +S+ GK + L F A WC C + E+ E + + +VS
Sbjct: 11 DGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAG---DDYVVLTVVSPGHKG 67
Query: 251 KE----FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGK 295
++ F + + + +P D L + ++ P I +GK
Sbjct: 68 EQSEADFKNWYKGLDYKNLPVLVDP-SGKLLETYGVRSYPTQAFIDKEGK 116
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 7e-08
Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--G 91
LS GK + L F A+WC C P ++ L V+ +++
Sbjct: 14 TYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEAD 73
Query: 92 FEEHFKCMPWLAVP--FDETLHKKLRIRYRVDRIPSLIPLASDGTLI--------EEDLI 141
F+ +K + + +P D + KL Y V P+ + +G L+ ++ ++
Sbjct: 74 FKNWYKGLDYKNLPVLVDPS--GKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAIL 131
Query: 142 GLIE 145
++
Sbjct: 132 QTLK 135
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-09
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
+ L GK L+F WCP C + L +V V ++T D
Sbjct: 13 SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-----VTFVGIATRADV 67
Query: 251 ---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
+ F ++ + + + D + +N+ PA V DG
Sbjct: 68 GAMQSF-VSKYNLNFTNLNDAD---GVIWARYNVPWQPAFVFYRADGT 111
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-07
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
+S GK L+F WC C P L Q+ + + I+ D +
Sbjct: 16 PFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAA----ANPAVTFVGIATRADVGAMQ 71
Query: 94 EHFKCMPW-LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136
D + RY V P+ + +DGT
Sbjct: 72 SFVSKYNLNFTNLNDAD--GVIWARYNVPWQPAFVFYRADGTST 113
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-09
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 8/115 (6%)
Query: 188 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELK---TTANHCFEVVLV 244
L + +I +S+ + + L WC PCRS + L ++ EL+ V+ +
Sbjct: 45 LMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGI 104
Query: 245 STDRDHKE----FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
+ ++ F ++ + + +I IP +++ +
Sbjct: 105 NVRDYSRDIAQDFVTDNGL-DYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHR 158
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 20/142 (14%)
Query: 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTE----LEVIF 82
L +G + LS + + L WC PC++ + L +++ L+ G V+
Sbjct: 44 SLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLG 103
Query: 83 ISFDHDEN-----GFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI- 136
I+ D + F + + ++ + IP+ I L
Sbjct: 104 INVR-DYSRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAA 161
Query: 137 -------EEDLIGLIEDYGADA 151
+D++ + +A
Sbjct: 162 VFLREVTSKDVLDVALPLVDEA 183
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 18/147 (12%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
D +++T+S L GK + L F A WC CR + + K N F ++ + D
Sbjct: 22 DGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWL-KHKDNADFALIGIDRDEPL 80
Query: 251 ---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGKTISTNGKEMI 305
F + + + D+ + ++ GI VLI +GK + ++
Sbjct: 81 EKVLAF-AKSTGVTYPLGLDPGA---DIFAKYALRDAGITRNVLIDREGKIV-----KLT 131
Query: 306 SLYGAKAFPFTESRIAEIETALKKEGD 332
LY + F +I LK+
Sbjct: 132 RLYNEEEFASLV---QQINEMLKEGHH 155
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 9/109 (8%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG-- 91
+V LSS GK + L F+A+WC C+ P + + + +I I D
Sbjct: 25 QVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVL 84
Query: 92 -FEEHFKCMPWLAVPFDETLHKKLRIRYRVDR--IPSLIPLASDGTLIE 137
F + + + + D + +Y + I + + +G +++
Sbjct: 85 AFAKSTG-VTYP-LGLDPG--ADIFAKYALRDAGITRNVLIDREGKIVK 129
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 9e-09
Identities = 60/408 (14%), Positives = 118/408 (28%), Gaps = 134/408 (32%)
Query: 3 RDNDQSKFIDSSDFL-TVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFT 61
+ D D D ++L+ E ++ ++ + V
Sbjct: 31 DNFD---CKDVQDMPKSILSKEEIDHIIMSKDAVS------------------------- 62
Query: 62 PQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-----DETLHKKLRI 116
++L+ TL ++ E+ F+ N +L P ++ ++ I
Sbjct: 63 -GTLRLFWTLLSKQEEMVQKFVEEVLRIN--------YKFLMSPIKTEQRQPSMMTRMYI 113
Query: 117 RYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKR---QG- 172
R DR L +D + + + ++ Y K R+ L + +K G
Sbjct: 114 EQR-DR------LYNDNQVFAKYNVSRLQPY--------LKLRQALLELRPAKNVLIDGV 158
Query: 173 ---GKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCP--PCRSFTSQLIEV 227
GK +A++ V ++ + F W C S ++E+
Sbjct: 159 LGSGK--TWVALD----VC-LSYKVQCK---------MDFKIFWLNLKNCNS-PETVLEM 201
Query: 228 YNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA- 286
+L +++ T R ++ I + +L R+ K
Sbjct: 202 LQKL------LYQIDPNWTSRSDHSSNIKLRI---------HSIQAELRRLLKSKPYENC 246
Query: 287 -LVLIGPDG--------------KT-ISTNGKEMI-SLYGAKAF---------PFTESRI 320
LVL K ++T K++ L A T +
Sbjct: 247 LLVL---LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 321 AEI-ETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFW 367
+ L LPREV + +L + + D W
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRD-GLATWDNW 347
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 12/109 (11%)
Query: 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252
+ K ++F + C C+ Q+ E ++ + VV V R +
Sbjct: 20 EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ----LNVVAVHMPRSEDD 75
Query: 253 FDLNHSIMPWLA---IPY---EDRARQDLCRIFNIKGIPALVLIGPDGK 295
D I A I D L F + +PA + G+
Sbjct: 76 LDPG-KIKETAAEHDITQPIFVDS-DHALTDAFENEYVPAYYVFDKTGQ 122
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-08
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 11/112 (9%)
Query: 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS---TDRD 249
L GK L+F A WCP C+ + +V V V+
Sbjct: 16 HDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-----VTFVGVAGLDQVPA 70
Query: 250 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNG 301
+EF + + + + D + F + PA + P G G
Sbjct: 71 MQEFVNKYPVKTFTQLADTD---GSVWANFGVTQQPAYAFVDPHGNVDVVRG 119
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-06
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 8/104 (7%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
S GK L+F A WC C+ P + Q+ E+ + ++ +
Sbjct: 17 DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAA----SHPEVTFVGVAGLDQVPAMQ 72
Query: 94 EHFK--CMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTL 135
E + D + + V + P+ + G +
Sbjct: 73 EFVNKYPVKTFTQLADTD--GSVWANFGVTQQPAYAFVDPHGNV 114
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
D+R +V K + F A WCP C S Q + + K ++ V++
Sbjct: 27 DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAK---FSSANLITVASPGFL 83
Query: 251 KEFDLNHSIMPWLAIPYEDR-----ARQDLCRIFNIKGIPALVLIGPDGK 295
E + + Y + + NI P+ LIG DG
Sbjct: 84 HEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGD 133
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 6e-07
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 19/133 (14%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----D 88
+ K + F A+WC C + Q + + +I ++
Sbjct: 30 PASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKK 87
Query: 89 ENGFEEHFKCM--PWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI--------EE 138
+ F++ + + P L V D + + PS + DG + E
Sbjct: 88 DGEFQKWYAGLNYPKLPVVTDNG--GTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEA 145
Query: 139 DLIGLIEDYGADA 151
+ LI + AD
Sbjct: 146 QALALIRNPNADL 158
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 261
G+ L+F WCPPC+ Q Y+ + ++V V+ + +
Sbjct: 34 GQKTILHFWTSWCPPCKKELPQFQSFYDAHP---SDSVKLVTVNLVNSEQNQQ---VVED 87
Query: 262 WLA---IPYE---DRARQDLCRIFNIKGIPALVLIGPDGK 295
++ + + D + +L + ++I IP L+ G+
Sbjct: 88 FIKANKLTFPIVLDS-KGELMKEYHIITIPTSFLLNEKGE 126
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-06
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 15 DFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR 74
F + EG + + +G+ L F +WC PCK PQ YD +
Sbjct: 17 VF-LMKTIEGEDISIPNKGQK---------TILHFWTSWCPPCKKELPQFQSFYDAHPSD 66
Query: 75 GTELEVIFISFDHDENG------FEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIP 128
++++ ++ + E F + K + + + D +L Y + IP+
Sbjct: 67 S--VKLVTVNLVNSEQNQQVVEDFIKANK-LTF-PIVLDSK--GELMKEYHIITIPTSFL 120
Query: 129 LASDGTLI--------EEDLIGLIE 145
L G + E L E
Sbjct: 121 LNEKGEIEKTKIGPMTAEQLKEWTE 145
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 7e-07
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 23/128 (17%)
Query: 202 GKTIGLYF-GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 260
K IGL+F G+ WC C Q+++ +E K A +V D K
Sbjct: 47 HKPIGLFFTGSDWCMWCIKMQDQILQ-SSEFKHFAGVHL--HMVEVDFPQKNHQ------ 97
Query: 261 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRI 320
+ + Q+L + + G P LV I +GK ++ G E G A+ +
Sbjct: 98 ----PEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMGFEP---GGGAAY------V 144
Query: 321 AEIETALK 328
+++++ALK
Sbjct: 145 SKVKSALK 152
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 7e-07
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 19/99 (19%)
Query: 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 260
K L FGA+WC CR+ L + FEVV + D FD N +
Sbjct: 28 THKPTLLVFGANWCTDCRALDKSLRN--QKNTALIAKHFEVVKI----DVGNFDRNLELS 81
Query: 261 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299
P GIPA+V++ DGK T
Sbjct: 82 QAYGDP-------------IQDGIPAVVVVNSDGKVRYT 107
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-06
Identities = 23/117 (19%), Positives = 34/117 (29%), Gaps = 29/117 (24%)
Query: 193 RKITVSEL-----AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247
TV +T + G CP CR F L V E K + ++++
Sbjct: 15 EVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK------AHIYFINSE 68
Query: 248 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEM 304
+ DL Q + I +P V I DG+ M
Sbjct: 69 EPSQLNDL-----------------QAFRSRYGIPTVPGFVHIT-DGQINVRCDSSM 107
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 17 LTVLASEGVEF----LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL 71
+++ G LL +G+ V ++ + +F+ A+WC CK P L ++
Sbjct: 1 MSLAVKPGEPLPDFLLLDPKGQPVTPATVSKPAVIVFW-ASWCTVCKAEFPGLHRVA--- 56
Query: 72 RTRGTELEVIFISFDHDENG----FEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124
G VI + + + +P LA D ++ R++V P
Sbjct: 57 EETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRP--HEVAARFKVLGQP 111
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 193 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250
+ +T + ++ + + F A WC C++ L V E F V+
Sbjct: 22 QPVTPATVSKPAV-IVFWASWCTVCKAEFPGLHRVAEETGVP----FYVISREPRDTREV 76
Query: 251 -KEF-DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
E+ +P LA + + F + G P ++ +GK
Sbjct: 77 VLEYMKTYPRFIPLLASDRDRPHE--VAARFKVLGQPWTFVVDREGK 121
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 44/254 (17%), Positives = 79/254 (31%), Gaps = 70/254 (27%)
Query: 49 FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108
F A WC CK F P+ ++ + L+ + + V I D
Sbjct: 39 FYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI-----------------------DA 75
Query: 109 TLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDS 168
T L R+ V P++ + G ++ Y +R + E + + +
Sbjct: 76 TSASVLASRFDVSGYPTIK-ILKKGQAVD--------------YEGSRTQEEIVAKVREV 120
Query: 169 KRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVY 228
+ VL++++ V++ I + F A WC C+ + +
Sbjct: 121 SQPDWT-----PPPEVTLVLTKENFDEVVND--ADIILVEFYAPWCGHCKKLAPEYEKAA 173
Query: 229 NELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALV 288
EL + L D A DL + F++ G P L
Sbjct: 174 KELS---KRSPPIPLAKVDAT---------------------AETDLAKRFDVSGYPTLK 209
Query: 289 LIGPDGKTISTNGK 302
+ G+ NG
Sbjct: 210 IF-RKGRPYDYNGP 222
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 5e-06
Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 28/142 (19%)
Query: 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 261
G + + WC C+ L + E + V+V+ + + + D + S
Sbjct: 46 GLPLMVIIHKSWCGACK----ALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP-- 99
Query: 262 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIA 321
+ IP ++ + P GK E+I+ G ++ +
Sbjct: 100 ------------------DGGYIPRILFLDPSGKVHP----EIINENGNPSYKYFYVSAE 137
Query: 322 EIETALKKEGDALPREVKDVKH 343
++ +K+ + L + KH
Sbjct: 138 QVVQGMKEAQERLTGDAFRKKH 159
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-06
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 27/100 (27%)
Query: 202 GKTIGLYFGAHWCPPCRSF---TSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 258
GK + L A WC C+ F T +V L + VL+ +
Sbjct: 31 GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-------DTVLLQANVTA-------- 75
Query: 259 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 298
D L + N+ G+P ++ G+
Sbjct: 76 ---------NDAQDVALLKHLNVLGLPTILFFDGQGQEHP 106
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 25/91 (27%)
Query: 209 FGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268
F CP C +L V E + N + + +
Sbjct: 33 FKTDTCPYCVEMQKELSYVSKEREGKFN----IYYARLEEE------------------- 69
Query: 269 DRARQDLCRIFNIKGIPALVLIGPDGKTIST 299
DL ++ +P V + +G
Sbjct: 70 --KNIDLAYKYDANIVPTTVFLDKEGNKFYV 98
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 32/108 (29%)
Query: 49 FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108
F + C C +L + + + + + ++N
Sbjct: 33 FKTDTCPYCVEMQKELSYVSKEREGK---FNIYYARLEEEKN------------------ 71
Query: 109 TLHKKLRIRYRVDRIPSLIPLASDGTLI--------EEDLIGLIEDYG 148
L +Y + +P+ + L +G + ++ ++ G
Sbjct: 72 ---IDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLG 116
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-05
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
L + G K + + FSA WC PCK P L + VIF+ D D+ E
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS------NVIFLEVDVDDCQDVASE 68
Query: 94 EHFKCMP 100
K MP
Sbjct: 69 SEVKSMP 75
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-05
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
SS +I + F A WC+PC + V + D D + +
Sbjct: 35 FSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN-------YYYVTLVDIDVDIHPKLNDQ 87
Query: 94 EHFKCMP 100
+ K +P
Sbjct: 88 HNIKALP 94
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 7e-05
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 12/105 (11%)
Query: 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE-------F 253
K + L F + C CR + N VL++ D+K
Sbjct: 46 HNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND---YVLITLYVDNKTPLTEPVKI 102
Query: 254 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 298
N + + + Q F P VLI +G ++
Sbjct: 103 MENGTERTLRTVGDKWSYLQR--VKFGANAQPFYVLIDNEGNPLN 145
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
L K + + F A WC PCKT P +L + + + IF+ D D+ +
Sbjct: 28 LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-------KYDAIFVKVDVDKLEETARK 80
Query: 94 EHFKCMP 100
+ MP
Sbjct: 81 YNISAMP 87
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 8e-05
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 35/102 (34%)
Query: 209 FGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268
FG P C QL ++ ++ + + + LV D+
Sbjct: 30 FGRDEDPVCL----QLDDILSKTSSDLSKMAAIYLVDVDQT------------------- 66
Query: 269 DRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 310
+ F+I IP+ V NG+ M YG+
Sbjct: 67 ----AVYTQYFDISYIPSTVFF--------FNGQHMKVDYGS 96
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
L + G K + + FSA WC P K P L + VIF+ D D+ E
Sbjct: 26 LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS------NVIFLEVDVDDCQDVASE 79
Query: 94 EHFKCMP 100
K MP
Sbjct: 80 CEVKSMP 86
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
LS G + + F+ C PC P + + + +F+ D +
Sbjct: 16 LSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP------QAVFLEVDVHQCQGTAAT 69
Query: 94 EHFKCMP 100
+ P
Sbjct: 70 NNISATP 76
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 27/115 (23%)
Query: 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYN--ELKTTANHCFEVVLVSTDRDHKEFDLNHS 258
G+ + +YF + CP C+ + V + + F V VS D
Sbjct: 18 HGRMVMVYFHSEHCPYCQQMNT---FVLSDPGVSRLLEARFVVASVSVDTP--------- 65
Query: 259 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAF 313
Q+L R + + G P V + P G+ + F
Sbjct: 66 ------------EGQELARRYRVPGTPTFVFLVPKAGAWEEVGR-LFGSRPRAEF 107
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 6e-04
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 31/102 (30%)
Query: 42 GKTICLFFSANWCRPCK-----TFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF 96
G+ + ++F + C C+ + V LE F+ + E
Sbjct: 19 GRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRL---------LEARFVVASVSVDTPE--- 66
Query: 97 KCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138
++L RYRV P+ + L EE
Sbjct: 67 --------------GQELARRYRVPGTPTFVFLVPKAGAWEE 94
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 3e-04
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
G K I L+F +W PCK +++ + + V F+S D DEN
Sbjct: 20 GDKLIVLYFHTSWAEPCKALKQ----VFEAISNEPSNSNVSFLSIDADEN 65
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 6e-04
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG---FE 93
L+ GK + L F A WC PCK +P+LV+L V+ + D DE E
Sbjct: 15 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQF-----ADNVVVLKVDVDECEDIAME 69
Query: 94 EHFKCMP 100
+ MP
Sbjct: 70 YNISSMP 76
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 7e-04
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
++ G+ I + F A WC PC+ P++ L + EV F D D+N
Sbjct: 14 INENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP------EVEFAKVDVDQN 61
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 7e-04
Identities = 15/118 (12%), Positives = 28/118 (23%), Gaps = 36/118 (30%)
Query: 207 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 266
L+ C C ++ V V +
Sbjct: 23 LFIKTENCGVCDVMLRKVNYVLENYN-------YVEKIEILLQDM--------------- 60
Query: 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE 324
Q++ + + P ++L NGKE++ + E I E
Sbjct: 61 ------QEIAGRYAVFTGPTVLLF--------YNGKEILRESRFISLENLERTIQLFE 104
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.95 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.91 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.91 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.9 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.9 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.9 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.89 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.89 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.89 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.89 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.89 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.88 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.88 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.88 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.88 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.88 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.88 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.88 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.88 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.87 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.87 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.87 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.87 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.86 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.86 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.86 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.86 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.86 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.86 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.86 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.86 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.86 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.85 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.85 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.85 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.85 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.85 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.85 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.85 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.85 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.84 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.84 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.84 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.84 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.84 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.84 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.84 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.84 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.84 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.84 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.83 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.83 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.83 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.83 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.83 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.83 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.83 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.83 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.83 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.83 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.83 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.83 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.72 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.83 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.83 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.82 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.82 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.82 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.82 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.82 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.82 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.82 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.82 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.82 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.82 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.82 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.82 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.82 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.71 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.82 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.82 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.81 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.81 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.81 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.81 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.81 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.81 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.81 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.81 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.81 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.81 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.81 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.81 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.81 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.81 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.81 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.81 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.8 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.8 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.8 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.8 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.8 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.8 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.8 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.79 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.79 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.79 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.79 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.78 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.78 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.78 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.78 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.78 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.77 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.77 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.64 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.77 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.77 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.77 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.76 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.76 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.76 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.76 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.76 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.75 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.75 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.75 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.75 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.75 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.75 | |
| 1v5n_A | 89 | PDI-like hypothetical protein AT1G60420; DC1 domai | 99.74 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.74 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.74 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.74 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.74 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.73 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.73 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.73 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.73 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.73 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.73 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.73 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.73 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.72 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.72 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.72 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.72 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.71 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.7 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.7 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.7 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.69 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.69 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.69 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.69 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.69 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.69 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.51 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.68 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.68 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.68 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.68 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.68 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.67 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.67 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.67 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.67 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.67 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.67 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.67 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.67 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.67 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.66 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.66 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.66 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.66 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.66 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.66 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.66 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.66 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.65 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.65 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.65 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.65 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.65 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.65 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.65 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.65 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.65 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.65 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.65 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.65 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.65 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.65 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.64 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.64 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.64 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.64 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.64 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.64 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.63 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.63 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.63 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.63 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.63 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.61 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.61 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.6 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.6 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.59 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.58 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.58 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.58 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.58 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.58 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.58 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.57 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.57 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.57 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.56 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.56 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.55 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.55 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.55 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.55 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.55 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.55 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.55 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.54 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.54 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.54 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.54 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.53 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.53 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.53 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.53 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.53 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.53 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.53 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.52 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.52 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.52 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.52 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.52 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.51 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.51 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.51 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.5 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.5 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.5 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.5 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.5 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.5 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.5 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.49 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 99.24 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.49 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.49 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.49 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.49 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.48 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.48 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.48 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.48 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.47 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.47 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.47 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.47 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.47 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.47 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.47 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.47 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.47 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.47 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.46 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.46 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.46 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.46 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.46 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.46 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.45 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.45 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.45 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.45 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.45 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.45 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.45 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.44 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.44 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.44 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.44 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.44 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.44 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.43 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.43 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.43 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.43 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.43 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.43 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.43 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.42 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.42 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.42 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.42 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.42 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.42 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.42 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.42 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.42 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.42 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.42 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.41 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.41 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.41 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.41 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.41 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.41 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.41 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.41 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.41 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.4 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.4 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.39 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.39 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.39 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.39 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.39 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.38 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.38 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.38 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.38 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.38 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.38 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.37 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.37 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.37 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.37 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.37 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.37 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.37 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.36 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.36 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.36 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.36 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.36 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.36 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.36 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.36 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.36 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.35 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.35 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 99.03 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.34 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.34 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.34 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.34 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.34 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.34 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.34 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.33 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.33 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.33 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.33 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.33 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.32 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.32 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.32 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.32 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.32 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.32 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.32 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.31 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.31 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.31 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.31 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.31 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.31 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.3 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.3 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.3 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.3 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.29 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.29 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.29 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.29 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.29 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.28 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.28 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.28 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.28 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.28 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.27 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.27 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.92 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.26 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.26 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.25 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.25 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.25 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.24 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.24 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.24 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.23 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.22 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.22 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.21 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.21 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.2 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.2 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.2 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.19 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.18 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.17 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.17 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.76 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.14 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.13 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.13 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.09 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.09 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.09 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.09 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.08 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.08 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.08 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.07 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.06 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.03 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.02 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.99 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.96 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.92 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.91 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.88 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 98.83 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.82 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.81 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.81 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.76 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.74 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.73 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.71 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.71 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.71 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.7 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.68 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.68 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.68 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.66 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 98.65 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 98.63 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.62 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.61 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.61 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.59 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.59 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 98.57 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.56 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.56 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.54 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.46 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.46 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.44 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.43 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.42 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.41 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.4 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.37 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.35 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.35 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 98.33 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.31 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.28 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.27 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.19 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.18 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 98.11 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 98.09 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 98.0 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.96 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.94 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 97.94 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 97.92 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.87 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.84 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.81 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 97.79 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.75 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.73 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 97.68 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 97.67 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 97.67 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 97.67 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 97.64 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 97.64 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 97.63 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 97.54 |
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=207.69 Aligned_cols=219 Identities=18% Similarity=0.337 Sum_probs=150.1
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
+..++++ +.....+|++++|+||++||++|+.+.|.|.++++++++.+..+.++.|++| .+
T Consensus 17 v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~--~~---------------- 78 (241)
T 3idv_A 17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT--SA---------------- 78 (241)
T ss_dssp EEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETT--TC----------------
T ss_pred cEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEecc--CC----------------
Confidence 5566666 6655567999999999999999999999999999999876544556655554 32
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCce
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDY 186 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f 186 (390)
..++++|+|.++||+++++ +|+.+... +. .........+....... ....+..
T Consensus 79 -----~~l~~~~~v~~~Pt~~~~~-~g~~~~~~--------g~---~~~~~l~~~i~~~~~~~----------~~~~~~~ 131 (241)
T 3idv_A 79 -----SVLASRFDVSGYPTIKILK-KGQAVDYE--------GS---RTQEEIVAKVREVSQPD----------WTPPPEV 131 (241)
T ss_dssp -----HHHHHHTTCCSSSEEEEEE-TTEEEECC--------SC---SCHHHHHHHHHHHHSTT----------CCCCCCS
T ss_pred -----HHHHHhcCCCcCCEEEEEc-CCCccccc--------Cc---ccHHHHHHHHhhccCcc----------ccccccc
Confidence 6899999999999999996 67654211 11 01111112221111110 0111222
Q ss_pred EEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCccccc
Q 016404 187 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 266 (390)
Q Consensus 187 ~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 266 (390)
....+++.+......+++++|+||++||++|+.+.|.+.+++++++. ...++.++.|.++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~v~~~~vd~~~------------------ 192 (241)
T 3idv_A 132 TLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSK-RSPPIPLAKVDATA------------------ 192 (241)
T ss_dssp SEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHT-SSSCCCEEEEETTT------------------
T ss_pred ceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhc-cCCcEEEEEEECCC------------------
Confidence 33444444443333568999999999999999999999999999975 23457788887775
Q ss_pred CCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhc
Q 016404 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 331 (390)
Q Consensus 267 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 331 (390)
+..++++|+|.++|++++++ +|+.+.. .|... .+.+.+.+.+..
T Consensus 193 -----~~~l~~~~~v~~~Pt~~~~~-~g~~~~~--------~g~~~-------~~~l~~~l~~~~ 236 (241)
T 3idv_A 193 -----ETDLAKRFDVSGYPTLKIFR-KGRPYDY--------NGPRE-------KYGIVDYMIEQS 236 (241)
T ss_dssp -----CHHHHHHTTCCSSSEEEEEE-TTEEEEC--------CSCCS-------HHHHHHHHHHHT
T ss_pred -----CHHHHHHcCCcccCEEEEEE-CCeEEEe--------cCCCC-------HHHHHHHHHhhh
Confidence 36799999999999999994 5665543 34333 566666666544
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=172.94 Aligned_cols=136 Identities=38% Similarity=0.641 Sum_probs=119.2
Q ss_pred hhccCCc-eEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRD-YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~-f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
++..+|+ |++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++ ..++.|++|++|.+.+.+.++
T Consensus 3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vv~v~~d~~~~~~~~~ 80 (144)
T 1i5g_A 3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE--KKNFEVMLISWDESAEDFKDY 80 (144)
T ss_dssp TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHHH
T ss_pred hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCCEEEEEEeCCCCHHHHHHH
Confidence 4678899 999 999999999999999999999999999999999999999999973 258999999999999999999
Q ss_pred hhcCCcccccCCc-hHHHHHHHHccccccceEEEEC-CCCcEEeeCcchhhhhcC-ccCCCCC
Q 016404 257 HSIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIG-PDGKTISTNGKEMISLYG-AKAFPFT 316 (390)
Q Consensus 257 ~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid-~~G~v~~~~g~~~~~~~g-~~~~p~~ 316 (390)
++.++|..+|+.. +....+++.|+|.++|+++||| ++|+|+.+.++....... ...|||.
T Consensus 81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~ 143 (144)
T 1i5g_A 81 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp HTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCCC
Confidence 9999999999876 5678999999999999999999 999999998766554433 3444543
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-24 Score=178.89 Aligned_cols=137 Identities=32% Similarity=0.692 Sum_probs=120.0
Q ss_pred HhhccCCce-EE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHH
Q 016404 178 LLAIEGRDY-VL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 255 (390)
Q Consensus 178 l~g~~~p~f-~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 255 (390)
.+|.++|+| .+ +.+| .+++++++||+|||+||++||++|+.++|.|.+++++|++ ..++.||+|++|.+.+.+.+
T Consensus 23 ~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~--~~~v~vv~v~~d~~~~~~~~ 99 (165)
T 3s9f_A 23 GVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHD--SKNFEIILASWDEEEDDFNA 99 (165)
T ss_dssp HHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCCSHHHHHH
T ss_pred hhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhcc--CCCeEEEEEecCCCHHHHHH
Confidence 468889998 77 9999 9999999999999999999999999999999999999973 24899999999999999999
Q ss_pred hhhcCCcccccCCchHH-HHHHHHccccccceEEEECCC-CcEEeeCcchhhh-hcCccCCCCCh
Q 016404 256 NHSIMPWLAIPYEDRAR-QDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMIS-LYGAKAFPFTE 317 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~-~~l~~~~~v~~~P~~~lid~~-G~v~~~~g~~~~~-~~g~~~~p~~~ 317 (390)
+++.++|..+|+..+.. ..+++.|+|.++|+++|||++ |+|+.++++.... ......|||..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~~ 164 (165)
T 3s9f_A 100 YYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRD 164 (165)
T ss_dssp HHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred HHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCCC
Confidence 99999999999877644 799999999999999999998 9999998765443 33455567654
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=181.20 Aligned_cols=187 Identities=19% Similarity=0.271 Sum_probs=122.2
Q ss_pred ccCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016404 39 SCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 39 ~~~gk~vll~F~a~-~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
..++++++++||++ ||++|+.+.|.|.++++. .+ ++.++.|++|..+. ..++++
T Consensus 19 ~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~---~v~~~~vd~~~~~~---------------------~~~~~~ 73 (226)
T 1a8l_A 19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TD---KLSYEIVDFDTPEG---------------------KELAKR 73 (226)
T ss_dssp GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CT---TEEEEEEETTSHHH---------------------HHHHHH
T ss_pred hcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CC---ceEEEEEeCCCccc---------------------HHHHHH
Confidence 45678889999999 999999999999998754 22 37777777663223 689999
Q ss_pred cCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCCeee-
Q 016404 118 YRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT- 196 (390)
Q Consensus 118 ~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~~~~- 196 (390)
|++.++|+++++. +|+...... .+. +........+......... .. ..+.+.+.
T Consensus 74 ~~v~~~Pt~~~~~-~g~~~~~~~------~G~---~~~~~l~~~l~~~l~~~~~-----------~~----~l~~~~~~~ 128 (226)
T 1a8l_A 74 YRIDRAPATTITQ-DGKDFGVRY------FGL---PAGHEFAAFLEDIVDVSRE-----------ET----NLMDETKQA 128 (226)
T ss_dssp TTCCSSSEEEEEE-TTBCCSEEE------ESC---CCTTHHHHHHHHHHHHHHT-----------CC----CCCHHHHHH
T ss_pred cCCCcCceEEEEc-CCceeeEEE------ecc---CcHHHHHHHHHHHHhhcCC-----------CC----CCCHHHHHH
Confidence 9999999999995 564321000 010 1111111111111100000 00 01111111
Q ss_pred ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
+....+++++|+||++||++|+.+.|.+.+++++++.....++.++.|+++. +..++
T Consensus 129 ~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~-----------------------~~~l~ 185 (226)
T 1a8l_A 129 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-----------------------YPEWA 185 (226)
T ss_dssp HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-----------------------CHHHH
T ss_pred HHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc-----------------------CHHHH
Confidence 1122345559999999999999999999999999872112367888887764 36789
Q ss_pred HHccccccceEEEECCCCcEEee
Q 016404 277 RIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.|+|.++|+++++ ++|+.+.+
T Consensus 186 ~~~~v~~~Pt~~~~-~~G~~~~~ 207 (226)
T 1a8l_A 186 DQYNVMAVPKIVIQ-VNGEDRVE 207 (226)
T ss_dssp HHTTCCSSCEEEEE-ETTEEEEE
T ss_pred HhCCCcccCeEEEE-eCCceeEE
Confidence 99999999998888 68887665
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=171.90 Aligned_cols=120 Identities=12% Similarity=0.203 Sum_probs=106.2
Q ss_pred HHhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHH---HHHHhhcccCCceEEEEEecCCCHHH
Q 016404 177 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIE---VYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
..+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+ ++++|++ .++.|++|+.|.+.+.
T Consensus 5 ~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~---~~~~vi~i~~d~~~~~ 81 (142)
T 3eur_A 5 NRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA---KKLKVLSIYPDEELDE 81 (142)
T ss_dssp TCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT---TSEEEEEEECSSCHHH
T ss_pred hcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc---CCeEEEEEEcCCCHHH
Confidence 457999999999 99999999999999999999999999999999999999 9999986 7899999999999999
Q ss_pred HHHhhhcCCcccccCCchHH--HHHHHHccccccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIMPWLAIPYEDRAR--QDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~--~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
+.+++..++. .++...+.. ..+.+.|++.++|+++|||++|+|++++
T Consensus 82 ~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (142)
T 3eur_A 82 WKKHRNDFAK-EWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD 130 (142)
T ss_dssp HHHHGGGSCT-TSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEE
T ss_pred HHHHHHhccc-ccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecC
Confidence 9999987773 344433333 3478899999999999999999999884
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-23 Score=170.20 Aligned_cols=135 Identities=35% Similarity=0.664 Sum_probs=117.6
Q ss_pred hhccCCc-eEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRD-YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~-f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
++..+|+ |++ +.+| .+++++++||++||+||++||++|+.++|.|.+++++|++ ..++.|++|++|.+.+.+.++
T Consensus 4 ~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~--~~~~~vv~v~~d~~~~~~~~~ 80 (146)
T 1o8x_A 4 LDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE--SKNFEVVFCTWDEEEDGFAGY 80 (146)
T ss_dssp GGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCCSHHHHHHH
T ss_pred hHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhh--cCCeEEEEEeCCCCHHHHHHH
Confidence 4778999 899 9999 9999999999999999999999999999999999999972 258999999999999999999
Q ss_pred hhcCCcccccCCc-hHHHHHHHHccccccceEEEEC-CCCcEEeeCcchhhhhc-CccCCCCC
Q 016404 257 HSIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIG-PDGKTISTNGKEMISLY-GAKAFPFT 316 (390)
Q Consensus 257 ~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid-~~G~v~~~~g~~~~~~~-g~~~~p~~ 316 (390)
++.++|..+|+.. +....+++.|+|.++|+++||| ++|+|+.+.++...... ....+||.
T Consensus 81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~ 143 (146)
T 1o8x_A 81 FAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWK 143 (146)
T ss_dssp HTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCC
T ss_pred HHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCC
Confidence 9999999999876 5677999999999999999999 99999999876544433 23444544
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-23 Score=170.46 Aligned_cols=139 Identities=19% Similarity=0.372 Sum_probs=117.2
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 257 (390)
+|..+|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++.|+.|++|.+.+.+..+.
T Consensus 2 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~v~~d~~~~~~~~~~ 78 (151)
T 2f9s_A 2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---QGVEIVAVNVGESKIAVHNFM 78 (151)
T ss_dssp CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEEESCCHHHHHHHH
T ss_pred CCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCCHHHHHHHH
Confidence 4788999999 999999999999999999999999999999999999999999985 689999999998888888888
Q ss_pred hcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCCCC
Q 016404 258 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP 335 (390)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p 335 (390)
..+++ .+|...+.+..+++.|++.++|+++|||++|+++.+ ..|... .++|.+.+++......
T Consensus 79 ~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~-------~~G~~~-------~~~l~~~l~~ll~~~~ 141 (151)
T 2f9s_A 79 KSYGV-NFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV-------VTGTMT-------ESMIHDYMNLIKPGET 141 (151)
T ss_dssp HHHTC-CSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEE-------EESCCC-------HHHHHHHHHHHSCC--
T ss_pred HHcCC-CceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEE-------EeCCCC-------HHHHHHHHHHHHhhhh
Confidence 86663 567766777899999999999999999999999987 345432 5566666666555443
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=168.37 Aligned_cols=134 Identities=36% Similarity=0.680 Sum_probs=117.1
Q ss_pred hhccCCce-EE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDY-VL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f-~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|..+|+| ++ +.+| .+++++++||++||+||++||++|+.++|.|.+++++|++ ..++.|++|++|.+.+.+.++
T Consensus 4 ~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vv~i~~d~~~~~~~~~ 80 (144)
T 1o73_A 4 LAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV--AKNFEVVLISWDENESDFHDY 80 (144)
T ss_dssp GGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHHH
T ss_pred hhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhcc--CCCEEEEEEeCCCCHHHHHHH
Confidence 57889997 88 9999 9999999999999999999999999999999999999972 268999999999999999999
Q ss_pred hhcCCcccccCCc-hHHHHHHHHccccccceEEEEC-CCCcEEeeCcchhhhhcC-ccCCCC
Q 016404 257 HSIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIG-PDGKTISTNGKEMISLYG-AKAFPF 315 (390)
Q Consensus 257 ~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid-~~G~v~~~~g~~~~~~~g-~~~~p~ 315 (390)
++.++|..+|+.. +....+++.|+|.++|+++||| ++|+|+++.++......+ ...|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~W 142 (144)
T 1o73_A 81 YGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPW 142 (144)
T ss_dssp HTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred HHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCCccCCCC
Confidence 9999999999876 5567899999999999999999 899999998765554332 344454
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-23 Score=167.27 Aligned_cols=117 Identities=17% Similarity=0.328 Sum_probs=105.8
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHH---HHHHhhcccCCceEEEEEecCCCHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIE---VYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+ ++++|++ .++.|++|++|.+.+.+.
T Consensus 3 ~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~---~~~~~v~v~~d~~~~~~~ 79 (142)
T 3ewl_A 3 AGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN---GTLRVLAIYPDENREEWA 79 (142)
T ss_dssp TTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH---TSEEEEEEECSSCHHHHH
T ss_pred CCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc---CCeEEEEEEecCCHHHHH
Confidence 5889999999 99999999999999999999999999999999999998 9999986 789999999999999999
Q ss_pred HhhhcCCcccccCCchHHHHHHH--HccccccceEEEECCCCcEEee
Q 016404 255 LNHSIMPWLAIPYEDRARQDLCR--IFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~--~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+++..++ +.+|...|....+.. .|+|.++|+++|||++|+|+++
T Consensus 80 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 80 TKAVYMP-QGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp HHHTTSC-TTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred HHHHHcC-CCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec
Confidence 9998777 366666666666766 9999999999999999999875
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-23 Score=169.05 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=99.7
Q ss_pred hhccCCceEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhh
Q 016404 179 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 258 (390)
Q Consensus 179 ~g~~~p~f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 258 (390)
+|..+|+|+++.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++.|++|++|.+.+.+.++++
T Consensus 9 ~G~~~P~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~---~~~~vv~vs~d~~~~~~~~~~~ 85 (143)
T 4fo5_A 9 PGDLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGP---DKIAMCSISMDEKESIFTETVK 85 (143)
T ss_dssp TTSBCCCCCC-----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCT---TTEEEEEEECCSCHHHHHHHHH
T ss_pred CcccCCceEEcCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCc---CCEEEEEEEccCCHHHHHHHHH
Confidence 5889999999889999999999999999999999999999999999999999986 6899999999999888999887
Q ss_pred cCC--c-ccccCCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 259 IMP--W-LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 259 ~~~--~-~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
..+ | ..+....+....+++.|++.++|+++|||++|+|+.++
T Consensus 86 ~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (143)
T 4fo5_A 86 IDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAAN 130 (143)
T ss_dssp HHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred HhCCCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence 544 3 22332333356899999999999999999999999884
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=167.10 Aligned_cols=118 Identities=21% Similarity=0.306 Sum_probs=105.0
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 257 (390)
+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++.|++|++|.+.+.+.+++
T Consensus 5 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~~ 81 (152)
T 2lrn_A 5 TGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKD---KGFTIYGVSTDRREEDWKKAI 81 (152)
T ss_dssp TTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTT---TTEEEEEEECCSCHHHHHHHH
T ss_pred CCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcc---CCeEEEEEEccCCHHHHHHHH
Confidence 5888999999 999999999999999999999999999999999999999999985 679999999998888888888
Q ss_pred hcCCcccccCCchH---HHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 258 SIMPWLAIPYEDRA---RQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 258 ~~~~~~~~~~~~~~---~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
...+ +.+|...+. ...+++.|++.++|+++|||++|+|+.+.
T Consensus 82 ~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 126 (152)
T 2lrn_A 82 EEDK-SYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE 126 (152)
T ss_dssp HHHT-CCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC
T ss_pred HHhC-CCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEee
Confidence 7554 234444444 67899999999999999999999999883
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=166.20 Aligned_cols=118 Identities=18% Similarity=0.319 Sum_probs=102.9
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 257 (390)
.|..+|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++.|++|++|...+.++.+.
T Consensus 11 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~---~~~~vv~i~~d~~~~~~~~~~ 87 (152)
T 2lrt_A 11 KEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYAS---QGFEIYQISLDGDEHFWKTSA 87 (152)
T ss_dssp CTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEECSCCHHHHHHHH
T ss_pred cCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhcc---CCeEEEEEEccCCHHHHHHHH
Confidence 4788999999 999999999999999999999999999999999999999999986 679999999999888888887
Q ss_pred hcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 258 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..++|..+.........+.+.|++.++|+++|||++|+|+.+
T Consensus 88 ~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 129 (152)
T 2lrt_A 88 DNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSAR 129 (152)
T ss_dssp TTCSSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEE
T ss_pred hCCCceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEe
Confidence 765554333332222359999999999999999999999998
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=169.32 Aligned_cols=137 Identities=19% Similarity=0.188 Sum_probs=115.1
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcE-EEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKT-IGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 255 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~-vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 255 (390)
+|.++|+|++ +.+|+.+++++++||+ +||+|| ++||++|+.++|.|.+++++|++ .+++||+|++| +.+.+.+
T Consensus 4 ~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~vs~d-~~~~~~~ 79 (161)
T 3drn_A 4 VGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD---YDVVVIGVSSD-DINSHKR 79 (161)
T ss_dssp TTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHT---TCEEEEEEESC-CHHHHHH
T ss_pred CCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEeCC-CHHHHHH
Confidence 5889999999 9999999999999997 999999 99999999999999999999986 67999999998 5778888
Q ss_pred hhhcCCcccccCCchHHHHHHHHccccc----cceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHh
Q 016404 256 NHSIMPWLAIPYEDRARQDLCRIFNIKG----IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 330 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 330 (390)
+.+.+++ .+|+..|....+++.|++.+ +|+++|||++|+|+++. .|... ....++++.+.+++.
T Consensus 80 ~~~~~~~-~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~-------~g~~~---~~~~~~~il~~l~~l 147 (161)
T 3drn_A 80 FKEKYKL-PFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIY-------NSQMN---PANHVNEALKALKQI 147 (161)
T ss_dssp HHHHTTC-CSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEE-------ECSSC---TTHHHHHHHHHHHHH
T ss_pred HHHHhCC-CceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEE-------ecCCC---CCcCHHHHHHHHHHh
Confidence 8887763 47777777789999999999 99999999999999883 33211 234455665555553
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-23 Score=170.86 Aligned_cols=137 Identities=19% Similarity=0.223 Sum_probs=106.0
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+++|+|++ +.+|+.+++++++||++||+|| ++||++|..++|.|++++++|++ .++.+++|+.|. .+...++
T Consensus 6 vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~---~~~~~v~vs~d~-~~~~~~~ 81 (157)
T 4g2e_A 6 IGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQ---VNAVVLGISVDP-PFSNKAF 81 (157)
T ss_dssp TTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGG---CSSEEEEEESSC-HHHHHHH
T ss_pred CCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccc---cCceEeeecccc-hhHHHHH
Confidence 5899999999 9999999999999999999999 99999999999999999999986 889999999985 5556666
Q ss_pred hhcCCcccccCCchHHHHHHHHcccc-----------ccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHH
Q 016404 257 HSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIET 325 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~ 325 (390)
.+.++ +.+|+..|.+..+++.||+. ..|++||||++|+|+++. .+. .+..+...+++.+
T Consensus 82 ~~~~~-~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~-------~~~--~~~~~~~~~eil~ 151 (157)
T 4g2e_A 82 KEHNK-LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKW-------VSD--DPTKEPPYDEIEK 151 (157)
T ss_dssp HHHTT-CCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEE-------EES--STTCCCCHHHHHH
T ss_pred HHHcC-CcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEE-------ECC--CCCCCCCHHHHHH
Confidence 66655 46777888889999999984 468999999999999873 221 1222334566666
Q ss_pred HHHH
Q 016404 326 ALKK 329 (390)
Q Consensus 326 ~~~~ 329 (390)
.++.
T Consensus 152 ~l~~ 155 (157)
T 4g2e_A 152 VVKS 155 (157)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=167.19 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=101.1
Q ss_pred hccCCceEE-eC--CCCeeeecccCCcEEEEEEccCCCcccHhh-HHHHHHHHHHhhcccCCceEEEEEecC------CC
Q 016404 180 AIEGRDYVL-SR--DHRKITVSELAGKTIGLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFEVVLVSTD------RD 249 (390)
Q Consensus 180 g~~~p~f~l-~~--~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~vv~v~~d------~~ 249 (390)
|.++|+|++ +. +|+.+++++++||++||+||++||++|+.+ +|.|.+++++|++ .++.|++|++| .+
T Consensus 3 g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~---~~v~~v~v~~~~~~~~~~~ 79 (158)
T 3eyt_A 3 AMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPE---DKVAVLGLHTVFEHHEAMT 79 (158)
T ss_dssp CEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT---TTEEEEEEECCCSCGGGSC
T ss_pred CCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCc---CCEEEEEEEecccccccCC
Confidence 778999999 63 789999999999999999999999999997 9999999999985 68999999985 46
Q ss_pred HHHHHHhhhcCCcccccCCchHHH-----HHHHHccccccceEEEECCCCcEEee
Q 016404 250 HKEFDLNHSIMPWLAIPYEDRARQ-----DLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+.+.++++.+++ .+|...+... .+++.|++.++|+++|||++|+|+.+
T Consensus 80 ~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 133 (158)
T 3eyt_A 80 PISLKAFLHEYRI-KFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH 133 (158)
T ss_dssp HHHHHHHHHHTTC-CSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred HHHHHHHHHHcCC-CceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 7788888887663 3555555444 69999999999999999999999987
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-22 Score=163.39 Aligned_cols=139 Identities=21% Similarity=0.337 Sum_probs=117.2
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 257 (390)
+|.++|+|++ + +|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++.|++|++|.+.+.+.+++
T Consensus 5 ~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~~ 80 (152)
T 3gl3_A 5 KGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKA---KGFQVVAVNLDAKTGDAMKFL 80 (152)
T ss_dssp TTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGG---GTEEEEEEECCSSHHHHHHHH
T ss_pred CCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEECCCCHHHHHHHH
Confidence 4889999999 8 9999999999999999999999999999999999999999986 679999999999988899998
Q ss_pred hcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCCC
Q 016404 258 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDAL 334 (390)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~ 334 (390)
..+++ .++...|....+++.|++.++|+++|||++|+|+.+ ..|... ...++|.+.+++.....
T Consensus 81 ~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~-------~~g~~~-----~~~~~l~~~i~~~~~~~ 144 (152)
T 3gl3_A 81 AQVPA-EFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQ-------HVGFRP-----ADKEALEQQILAALGGN 144 (152)
T ss_dssp HHSCC-CSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEE-------EESCCT-----TTHHHHHHHHHHHTC--
T ss_pred HHcCC-CCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEE-------EccCCC-----cCHHHHHHHHHHHHccc
Confidence 87773 566666777889999999999999999999999987 334322 23566666666655433
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=161.73 Aligned_cols=119 Identities=23% Similarity=0.347 Sum_probs=104.9
Q ss_pred hhccCCceEE-eCCCCeeeec--ccCCcEEEEEEccCCCcc--cHhhHHHHHHHHHHh-hcccCCceEEEEEecCCCHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPP--CRSFTSQLIEVYNEL-KTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~--~~~gk~vlv~F~a~wC~~--C~~~~p~l~~l~~~~-~~~~~~~~~vv~v~~d~~~~~ 252 (390)
+|.++|+|++ +.+|+.++++ +++||++||+||++||++ |+.++|.|.+++++| ++ .++.|++|++|.+.+.
T Consensus 7 ~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~---~~~~~v~v~~d~~~~~ 83 (150)
T 3fw2_A 7 IGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN---KYIGMLGISLDVDKQQ 83 (150)
T ss_dssp TTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTC---SSEEEEEEECCSCHHH
T ss_pred CCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccC---CCeEEEEEEcCCCHHH
Confidence 5899999999 9999999999 999999999999999999 999999999999999 64 6799999999998889
Q ss_pred HHHhhhcCC--cccccCCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIMP--WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
+.++++.++ |..+....+....+++.|++.++|+++|||++|+|+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 84 WKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp HHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred HHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence 999988555 333322222367999999999999999999999999884
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-23 Score=167.80 Aligned_cols=120 Identities=13% Similarity=0.172 Sum_probs=108.0
Q ss_pred HhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
.+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++.+++|++|.+.+.++++
T Consensus 6 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~ 82 (148)
T 3hcz_A 6 LLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRA---KGIQVYAANIERKDEEWLKF 82 (148)
T ss_dssp CTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGG---GTEEEEEEECCSSSHHHHHH
T ss_pred CCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc---CCEEEEEEEecCCHHHHHHH
Confidence 35899999999 999999999999999999999999999999999999999999986 57999999999888899999
Q ss_pred hhcCCcccccCCchHHHH--HHHHccccccceEEEECCCCcEEeeC
Q 016404 257 HSIMPWLAIPYEDRARQD--LCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~--l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
...+++..++...+.... +++.|++.++|+++|+|++|+++.+.
T Consensus 83 ~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 128 (148)
T 3hcz_A 83 IRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKR 128 (148)
T ss_dssp HHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEES
T ss_pred HHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEec
Confidence 887776556665555555 99999999999999999999999883
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-22 Score=164.30 Aligned_cols=118 Identities=23% Similarity=0.391 Sum_probs=106.3
Q ss_pred hhccCC-ceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGR-DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p-~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|.++| +|++ +.+|+.+++++++||++||+||++||++|+.+.|.|.+++++|++ .++.++.|++|.+.+.+.++
T Consensus 5 ~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~ 81 (152)
T 2lja_A 5 SGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAG---KDIHFVSLSCDKNKKAWENM 81 (152)
T ss_dssp TTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTT---SSEEEEEEECCSCHHHHHHH
T ss_pred cCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhcc---CCeEEEEEEccCcHHHHHHH
Confidence 588899 9999 999999999999999999999999999999999999999999975 68999999999988888888
Q ss_pred hhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 257 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+...++...++..+....+++.|++.++|+++|+|++|+++.+
T Consensus 82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 124 (152)
T 2lja_A 82 VTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISA 124 (152)
T ss_dssp HHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEES
T ss_pred HHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEc
Confidence 8866655455555556789999999999999999999999987
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=167.64 Aligned_cols=118 Identities=13% Similarity=0.226 Sum_probs=103.3
Q ss_pred HhhccCCceEE-e-CCCCeeeecccCCcEEEEEEccCCCcccHhh-HHHHHHHHHHhhcccCCceEEEEEecC------C
Q 016404 178 LLAIEGRDYVL-S-RDHRKITVSELAGKTIGLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFEVVLVSTD------R 248 (390)
Q Consensus 178 l~g~~~p~f~l-~-~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~vv~v~~d------~ 248 (390)
+.|.++|+|++ + .+|+.+++++++||+|||+||++||++|+.+ +|.|.+++++|++ .++.|++|++| .
T Consensus 4 ~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~---~~v~~v~v~~~~~~~~~~ 80 (160)
T 3lor_A 4 LDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDE---SQVQVIGLHSVFEHHDVM 80 (160)
T ss_dssp CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT---TTEEEEEEECCCSCGGGS
T ss_pred cCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCc---CCcEEEEEeccccccccC
Confidence 45889999999 6 8999999999999999999999999999995 9999999999986 67999999984 5
Q ss_pred CHHHHHHhhhcCCcccccCCchHHHH------HHHHccccccceEEEECCCCcEEee
Q 016404 249 DHKEFDLNHSIMPWLAIPYEDRARQD------LCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.+.+.++++.+++ .+|...+.... +++.|++.++|+++|||++|+|+.+
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 136 (160)
T 3lor_A 81 TPEALKVFIDEFGI-KFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQV 136 (160)
T ss_dssp CHHHHHHHHHHTTC-CSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred CHHHHHHHHHHcCC-CCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence 67888888887663 45655554555 9999999999999999999999988
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=160.38 Aligned_cols=118 Identities=19% Similarity=0.333 Sum_probs=104.8
Q ss_pred hhccCCceEE-eCCCCeeeec--ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHh-hcccCCceEEEEEecCCCHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNEL-KTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~--~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
+|.++|+|++ +.+|+.++++ +++||++||+||++||++|+.++|.|.+++++| ++ .++.+++|++|.+.+.+.
T Consensus 7 ~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~v~~d~~~~~~~ 83 (148)
T 3fkf_A 7 VGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN---KNFAMLGISLDIDREAWE 83 (148)
T ss_dssp TTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTC---TTEEEEEEECCSCHHHHH
T ss_pred CCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---CCeEEEEEECCCCHHHHH
Confidence 5889999999 9999999999 999999999999999999999999999999999 64 679999999999988999
Q ss_pred HhhhcCCcccccCCchH---HHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 255 LNHSIMPWLAIPYEDRA---RQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~---~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
++...++. .++...+. ...+++.|++.++|+++++|++|+++.+.
T Consensus 84 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 131 (148)
T 3fkf_A 84 TAIKKDTL-SWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARD 131 (148)
T ss_dssp HHHHHTTC-CSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred HHHHHcCC-CceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEec
Confidence 99886653 34443332 67999999999999999999999999884
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-22 Score=175.91 Aligned_cols=176 Identities=14% Similarity=0.195 Sum_probs=111.8
Q ss_pred cCCCEEEEEE----ecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH
Q 016404 40 CGGKTICLFF----SANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 40 ~~gk~vll~F----~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
.++.++++.| |++||++|+.+.|.+.++++++.+. ..+.++.|+ .+.+ ..++
T Consensus 19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~-~~v~~~~vd--~~~~---------------------~~l~ 74 (229)
T 2ywm_A 19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQ-DKIKLDIYS--PFTH---------------------KEET 74 (229)
T ss_dssp CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCT-TTEEEEEEC--TTTC---------------------HHHH
T ss_pred ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCC-CceEEEEec--Cccc---------------------HHHH
Confidence 3455556666 4899999999999999999888431 125555554 4443 7899
Q ss_pred HhcCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCCee
Q 016404 116 IRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKI 195 (390)
Q Consensus 116 ~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~~~ 195 (390)
++|+|+++||+++++ +|....+. .|. +........+........ ... ..+...+
T Consensus 75 ~~~~v~~~Ptl~~~~-~~~~~~~~-------~G~---~~~~~l~~~~~~~~~~~~-----------~~~----~l~~~~~ 128 (229)
T 2ywm_A 75 EKYGVDRVPTIVIEG-DKDYGIRY-------IGL---PAGLEFTTLINGIFHVSQ-----------RKP----QLSEKTL 128 (229)
T ss_dssp HHTTCCBSSEEEEES-SSCCCEEE-------ESC---CCTTHHHHHHHHHHHHHT-----------TCC----SCCHHHH
T ss_pred HHcCCCcCcEEEEEC-CCccccee-------cCC---ccHHHHHHHHHHHHhccC-----------Ccc----CCCHHHH
Confidence 999999999999996 44332111 011 111111111111100000 000 0111111
Q ss_pred e-ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHH
Q 016404 196 T-VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 274 (390)
Q Consensus 196 ~-l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (390)
. +....+++++++||++||++|+.+.|.+.++++++. ++.++.|.++. +..
T Consensus 129 ~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~-----~v~~~~vd~~~-----------------------~~~ 180 (229)
T 2ywm_A 129 ELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND-----YITSKVIDASE-----------------------NQD 180 (229)
T ss_dssp HHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----TEEEEEEEGGG-----------------------CHH
T ss_pred HHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC-----CeEEEEEECCC-----------------------CHH
Confidence 0 112234566899999999999999999999998873 57777777764 367
Q ss_pred HHHHccccccceEEEECCCCcE
Q 016404 275 LCRIFNIKGIPALVLIGPDGKT 296 (390)
Q Consensus 275 l~~~~~v~~~P~~~lid~~G~v 296 (390)
+++.|+|.++|++++ +|++
T Consensus 181 l~~~~~v~~~Pt~~~---~G~~ 199 (229)
T 2ywm_A 181 LAEQFQVVGVPKIVI---NKGV 199 (229)
T ss_dssp HHHHTTCCSSSEEEE---GGGT
T ss_pred HHHHcCCcccCEEEE---CCEE
Confidence 899999999999888 6774
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=163.07 Aligned_cols=116 Identities=22% Similarity=0.389 Sum_probs=101.9
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 257 (390)
.|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++.++.|++|.+.+.+.+++
T Consensus 10 ~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~v~~v~v~~d~~~~~~~~~~ 86 (165)
T 3or5_A 10 RPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS---RGFTFVGIAVNEQLPNVKNYM 86 (165)
T ss_dssp CCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT---TTEEEEEEECSCCHHHHHHHH
T ss_pred CCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCCHHHHHHHH
Confidence 4888999999 999999999999999999999999999999999999999999985 679999999999888888888
Q ss_pred hcCCcccccCCchHHHHHHHHc------cccccceEEEECCCCcEEee
Q 016404 258 SIMPWLAIPYEDRARQDLCRIF------NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~------~v~~~P~~~lid~~G~v~~~ 299 (390)
...++ .+|...+. ..+.+.| ++.++|+++|||++|+|+.+
T Consensus 87 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 132 (165)
T 3or5_A 87 KTQGI-IYPVMMAT-PELIRAFNGYIDGGITGIPTSFVIDASGNVSGV 132 (165)
T ss_dssp HHHTC-CSCEEECC-HHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEE
T ss_pred HHcCC-CCceEecC-HHHHHHHhhhhccCCCCCCeEEEECCCCcEEEE
Confidence 76552 34444443 3777888 79999999999999999987
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=161.97 Aligned_cols=118 Identities=20% Similarity=0.430 Sum_probs=106.4
Q ss_pred HhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC-HHHHHH
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDL 255 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~ 255 (390)
.+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++.+++|++|.+ .+.+.+
T Consensus 3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~~~~~~~~~ 79 (154)
T 3kcm_A 3 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAG---KPFRMLCVSIDEGGKVAVEE 79 (154)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---SSEEEEEEECCTTHHHHHHH
T ss_pred CCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEEcCCcchHHHHH
Confidence 35889999999 999999999999999999999999999999999999999999985 6899999999987 677777
Q ss_pred hhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 256 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
++..++ +.+|+..+....+++.|++.++|+++|||++|+++.+
T Consensus 80 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 122 (154)
T 3kcm_A 80 FFRKTG-FTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKK 122 (154)
T ss_dssp HHHHHC-CCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEE
T ss_pred HHHHcC-CCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEE
Confidence 777655 3466666777889999999999999999999999987
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=172.12 Aligned_cols=118 Identities=15% Similarity=0.283 Sum_probs=106.2
Q ss_pred hhccCCceEE-eCCCCeeeecccCCc-EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------CC
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RD 249 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-------~~ 249 (390)
+|.++|+|++ +.+|+.+++++++|| +|||+||++||++|+.++|.|++++++|++ .++.||+|++| .+
T Consensus 34 ~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Vs~d~~~~~~~d~ 110 (218)
T 3u5r_E 34 LGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAG---QGLAVVAINSNDAQAFPEET 110 (218)
T ss_dssp TTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTT---TTEEEEEEECSCTTTCGGGS
T ss_pred CCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHh---CCcEEEEEECCcccccccCC
Confidence 5899999999 999999999999999 599999999999999999999999999986 67999999997 56
Q ss_pred HHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 250 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
.+.++++...++ +.+|+..|....+++.|++.++|+++|||++|+|+++.
T Consensus 111 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g 160 (218)
T 3u5r_E 111 LERVGAEVKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHG 160 (218)
T ss_dssp HHHHHHHHHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEE
T ss_pred HHHHHHHHHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEec
Confidence 677888887665 46777777778999999999999999999999999874
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=159.06 Aligned_cols=119 Identities=32% Similarity=0.710 Sum_probs=108.6
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhh-CCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
..|.+.+|+ +++++++||+++|+||++||++|+.++|.|.++++++++ .+ +++++|++|.+.+.+++|+++++|..
T Consensus 11 f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~~ 88 (144)
T 1i5g_A 11 TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--FEVMLISWDESAEDFKDYYAKMPWLA 88 (144)
T ss_dssp SEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHHHHHTTCSSEE
T ss_pred eEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHHHHHHhCCccc
Confidence 579999999 999999999999999999999999999999999999985 33 99999999999999999999999999
Q ss_pred eecCh-hHHHHHHHhcCcCCCCeEEEEc-CCCccccccccccccc
Q 016404 104 VPFDE-TLHKKLRIRYRVDRIPSLIPLA-SDGTLIEEDLIGLIED 146 (390)
Q Consensus 104 ~~~~~-~~~~~l~~~~~v~~~P~~~~~d-~~G~i~~~~~~~~i~~ 146 (390)
+|+.. +....+++.|++.++|+++++| ++|+++.+.+...+..
T Consensus 89 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~ 133 (144)
T 1i5g_A 89 LPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVK 133 (144)
T ss_dssp CCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHH
T ss_pred cccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhh
Confidence 99854 6678999999999999999999 8999998887766654
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=183.42 Aligned_cols=241 Identities=12% Similarity=0.209 Sum_probs=149.0
Q ss_pred CcchhhhhhccCcceeecCCCc--cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChh
Q 016404 13 SSDFLTVLASEGVEFLLSRQGK--VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (390)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~~g~--~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~ 90 (390)
..+|..++.....+.+...+.. ..+-....++++|.|+++||++|+.+.|.|.+++++++++ +.++.|+.|....
T Consensus 104 ~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~---i~f~~vd~~~~~~ 180 (361)
T 3uem_A 104 KENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFIFIDSDHTDN 180 (361)
T ss_dssp HHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT---CEEEEECTTSGGG
T ss_pred HHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc---eEEEEecCChHHH
Confidence 3457888888888887777766 2222233468899999999999999999999999999875 4455444432132
Q ss_pred HHHHHHHhCCCcceecChhHHHHHHHhcCcCC--CCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchh
Q 016404 91 GFEEHFKCMPWLAVPFDETLHKKLRIRYRVDR--IPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDS 168 (390)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~--~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 168 (390)
..+++.||+.+ +|++++++.++.... . ...........+..+......
T Consensus 181 ---------------------~~~~~~fgi~~~~~P~~~~~~~~~~~~k-y--------~~~~~~~~~~~l~~fi~~~l~ 230 (361)
T 3uem_A 181 ---------------------QRILEFFGLKKEECPAVRLITLEEEMTK-Y--------KPESEELTAERITEFCHRFLE 230 (361)
T ss_dssp ---------------------HHHHHHTTCCTTTCSEEEEEECC--CCE-E--------CCSSCCCCHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHcCCCccCCccEEEEEcCCcccc-c--------CCCccccCHHHHHHHHHHHhc
Confidence 78999999987 999999985332211 0 000011222222222111100
Q ss_pred hhcccchhHHhhccCCc-----eEEeCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEE
Q 016404 169 KRQGGKLEQLLAIEGRD-----YVLSRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVV 242 (390)
Q Consensus 169 ~~~~~~~~~l~g~~~p~-----f~l~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv 242 (390)
...... +.....|. ....++++.+....+ .+|+++|+|||+||++|+.+.|.|.+++++|++ ..++.++
T Consensus 231 g~~~~~---~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~--~~~v~~~ 305 (361)
T 3uem_A 231 GKIKPH---LMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD--HENIVIA 305 (361)
T ss_dssp TCSCCC---CBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--CSSEEEE
T ss_pred CCCccc---ccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhcc--CCcEEEE
Confidence 000000 00011111 111344554443333 579999999999999999999999999999974 1345665
Q ss_pred EEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCC-CcEEeeCcchhhhhcCccCCCCChhhHH
Q 016404 243 LVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMISLYGAKAFPFTESRIA 321 (390)
Q Consensus 243 ~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~-G~v~~~~g~~~~~~~g~~~~p~~~~~~~ 321 (390)
.|..+.. . ++.|+|.++||+++++++ |+.+.+ +.|.+. .+
T Consensus 306 ~vd~~~~-----------------------~--~~~~~v~~~Pt~~~~~~~~~~~~~~-------~~G~~~-------~~ 346 (361)
T 3uem_A 306 KMDSTAN-----------------------E--VEAVKVHSFPTLKFFPASADRTVID-------YNGERT-------LD 346 (361)
T ss_dssp EEETTTC-----------------------B--CSSCCCCSSSEEEEECSSSSCCCEE-------CCSCSS-------HH
T ss_pred EEECCcc-----------------------c--hhhcCCcccCeEEEEECCCCcceeE-------ecCCCC-------HH
Confidence 5554432 1 457999999999999655 443333 345444 66
Q ss_pred HHHHHHHHh
Q 016404 322 EIETALKKE 330 (390)
Q Consensus 322 ~l~~~~~~~ 330 (390)
.|.+.+++.
T Consensus 347 ~l~~~l~~~ 355 (361)
T 3uem_A 347 GFKKFLESG 355 (361)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHhc
Confidence 777766654
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=156.06 Aligned_cols=114 Identities=22% Similarity=0.371 Sum_probs=103.0
Q ss_pred cCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEe-----cCCCHHHHHH
Q 016404 182 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS-----TDRDHKEFDL 255 (390)
Q Consensus 182 ~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~-----~d~~~~~~~~ 255 (390)
++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++ .++.++.|. .+.+.+.+.+
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~v~i~~~~~~~~~~~~~~~~ 76 (138)
T 4evm_A 1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAG----DDYVVLTVVSPGHKGEQSEADFKN 76 (138)
T ss_dssp CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT----TTEEEEEEECTTSTTCCCHHHHHH
T ss_pred CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC----CCcEEEEEEcCCCCchhhHHHHHH
Confidence 4799999 99999999999999999999999999999999999999999864 678999994 4456788999
Q ss_pred hhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 256 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+++.+++..++...+....+++.|++.++|+++|+|++|+++.+
T Consensus 77 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 120 (138)
T 4evm_A 77 WYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKT 120 (138)
T ss_dssp HHTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred HHhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEe
Confidence 99988877888877778899999999999999999999999987
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=159.61 Aligned_cols=134 Identities=16% Similarity=0.263 Sum_probs=104.1
Q ss_pred ccCCceEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcC
Q 016404 181 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 260 (390)
Q Consensus 181 ~~~p~f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 260 (390)
.++|+|+...+|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++.|++|++|. .+.+.++++.+
T Consensus 3 ~pa~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~---~~v~vv~v~~d~-~~~~~~~~~~~ 78 (151)
T 3raz_A 3 LSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK---GSVDMVGIALDT-SDNIGNFLKQT 78 (151)
T ss_dssp ----CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCT---TTEEEEEEESSC-HHHHHHHHHHS
T ss_pred CCcchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCC-hHHHHHHHHHc
Confidence 34566665689999999999999999999999999999999999999999965 789999999984 56777787765
Q ss_pred CcccccCC---chHHHHHHHHcc--ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCC
Q 016404 261 PWLAIPYE---DRARQDLCRIFN--IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA 333 (390)
Q Consensus 261 ~~~~~~~~---~~~~~~l~~~~~--v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~ 333 (390)
+ +.+|.. ......+++.|+ +.++|+++|||++|+++.+ ..|... .++|.+.+++..+.
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~-------~~g~~~-------~~~l~~~l~~l~~~ 141 (151)
T 3raz_A 79 P-VSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQT-------ITGEVN-------EKSLTDAVKLAHSK 141 (151)
T ss_dssp C-CSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEE-------CCSCCC-------HHHHHHHHHHHHTC
T ss_pred C-CCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEE-------ECCCCC-------HHHHHHHHHHHHHH
Confidence 5 234432 334678999999 9999999999999999988 345443 44555555554443
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=163.59 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=114.6
Q ss_pred HhhccCCceE--E-eCCCCeeeecccCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHH
Q 016404 178 LLAIEGRDYV--L-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253 (390)
Q Consensus 178 l~g~~~p~f~--l-~~~g~~~~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~ 253 (390)
.+|.++|+|+ + +.+|+++++++++||++||+||+ +||++|..++|.|++++++|++ .+++||+|++| +.+.+
T Consensus 8 ~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~---~~~~vv~vs~d-~~~~~ 83 (163)
T 3gkn_A 8 VLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDK---AGAKILGVSRD-SVKSH 83 (163)
T ss_dssp CCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHH---TTCEEEEEESS-CHHHH
T ss_pred ccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH---CCCEEEEEeCC-CHHHH
Confidence 3589999999 9 99999999999999999999998 9999999999999999999987 78999999998 66777
Q ss_pred HHhhhcCCcccccCCchHHHHHHHHccccc------------cceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHH
Q 016404 254 DLNHSIMPWLAIPYEDRARQDLCRIFNIKG------------IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIA 321 (390)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~ 321 (390)
.++.+.++ +.+|+..|....+++.||+.. +|+++|||++|+|++.. .+.. ....++
T Consensus 84 ~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-------~~~~----~~~~~~ 151 (163)
T 3gkn_A 84 DNFCAKQG-FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-------RKVK----VAGHAD 151 (163)
T ss_dssp HHHHHHHC-CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-------CSCC----STTHHH
T ss_pred HHHHHHhC-CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-------cCCC----cccCHH
Confidence 77777555 456777777789999999987 99999999999999873 2211 234466
Q ss_pred HHHHHHHHh
Q 016404 322 EIETALKKE 330 (390)
Q Consensus 322 ~l~~~~~~~ 330 (390)
++.+.+++.
T Consensus 152 ~il~~l~~l 160 (163)
T 3gkn_A 152 AVLAALKAH 160 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666654
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=162.53 Aligned_cols=127 Identities=33% Similarity=0.746 Sum_probs=111.3
Q ss_pred eeecCCCccccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhh-CCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 27 ~l~~~~g~~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
.|.+.+|.+++++++||++||+||++||++|+.++|.|.++++++++ .+ ++|++|++|.+.+.+++|+++++|..++
T Consensus 33 ~l~~~~g~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~--v~vv~v~~d~~~~~~~~~~~~~~~~~~~ 110 (165)
T 3s9f_A 33 KLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKN--FEIILASWDEEEDDFNAYYAKMPWLSIP 110 (165)
T ss_dssp CEEETTEEECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCCSHHHHHHHHTTCSSEECC
T ss_pred eeecCCCcccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCC--eEEEEEecCCCHHHHHHHHHhCCCcccc
Confidence 58888888999999999999999999999999999999999999986 34 9999999999999999999999999999
Q ss_pred cCh-hHHHHHHHhcCcCCCCeEEEEcCC-Cccccccccccccc-cCCCCCCCC
Q 016404 106 FDE-TLHKKLRIRYRVDRIPSLIPLASD-GTLIEEDLIGLIED-YGADAYPFT 155 (390)
Q Consensus 106 ~~~-~~~~~l~~~~~v~~~P~~~~~d~~-G~i~~~~~~~~i~~-~~~~~~~~~ 155 (390)
+.. +....+++.|++.++|+++|+|++ |+++.+.+...+.. .....|||.
T Consensus 111 ~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~ 163 (165)
T 3s9f_A 111 FANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWR 163 (165)
T ss_dssp TTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred cCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCC
Confidence 954 444899999999999999999998 99998887655433 455556664
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=161.27 Aligned_cols=118 Identities=22% Similarity=0.301 Sum_probs=102.9
Q ss_pred HhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-CHHHHHH
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-DHKEFDL 255 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-~~~~~~~ 255 (390)
++|..+|+|++ +.+|+.+++++++||++||+||++||++|+.+.|.|.+++++|++ .++.|++|+.+. +.+.+.+
T Consensus 3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~ 79 (153)
T 2l5o_A 3 LDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN---KNFQVLAVAQPIDPIESVRQ 79 (153)
T ss_dssp -CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGG---TTEEEEEEECTTSCHHHHHH
T ss_pred CCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc---CCeEEEEEecCCCCHHHHHH
Confidence 56889999999 999999999999999999999999999999999999999999986 689999999865 4566777
Q ss_pred hhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 256 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+...++ +.++...+....+++.|++.++|+++|||++|+++.+
T Consensus 80 ~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 122 (153)
T 2l5o_A 80 YVKDYG-LPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKT 122 (153)
T ss_dssp HHHHTT-CCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEE
T ss_pred HHHHcC-CCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEE
Confidence 777665 3455555666789999999999999999999999876
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=166.90 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=102.7
Q ss_pred HHhhccCCceEE-eCCC--CeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHH
Q 016404 177 QLLAIEGRDYVL-SRDH--RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~g--~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~ 253 (390)
..+|.++|+|++ +.+| +.+++++++||++||+||++||++|+.++|.|++++++ ++.|++|++|.+.+.+
T Consensus 30 ~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------~v~vv~vs~~d~~~~~ 102 (176)
T 3kh7_A 30 ALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ-------GVVIYGINYKDDNAAA 102 (176)
T ss_dssp TTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------TCEEEEEEESCCHHHH
T ss_pred cccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC-------CCEEEEEeCCCCHHHH
Confidence 457999999999 8888 89999999999999999999999999999999988764 4899999999899999
Q ss_pred HHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 254 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+++..+++....+..|....+++.|++.++|+++|||++|+|+++
T Consensus 103 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 148 (176)
T 3kh7_A 103 IKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHK 148 (176)
T ss_dssp HHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEE
T ss_pred HHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEE
Confidence 9999887754333455667899999999999999999999999987
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-22 Score=169.69 Aligned_cols=117 Identities=20% Similarity=0.302 Sum_probs=102.6
Q ss_pred hhccCCceEE-eCCCCeeeeccc--CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSEL--AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
+|+++|+|++ +.+|+.++|+++ +||+++|+|| ++||++|..++|.|++++++|++ .++.+++|+.|. .+..+
T Consensus 7 vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~---~~v~vv~is~d~-~~~~~ 82 (164)
T 4gqc_A 7 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK---ANAEVLAISVDS-PWCLK 82 (164)
T ss_dssp TTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGG---SSSEEEEEESSC-HHHHH
T ss_pred CCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhc---cCceEEEecCCC-HHHHH
Confidence 5999999999 999999999998 8999999888 99999999999999999999987 889999999984 55666
Q ss_pred HhhhcCCcccccCCchHHHHHHHHcccc----------ccceEEEECCCCcEEeeC
Q 016404 255 LNHSIMPWLAIPYEDRARQDLCRIFNIK----------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~----------~~P~~~lid~~G~v~~~~ 300 (390)
++...++ +.+|+..|.+..+++.||+. ..|++||||++|+|+++.
T Consensus 83 ~~~~~~~-~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~ 137 (164)
T 4gqc_A 83 KFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKW 137 (164)
T ss_dssp HHHHHTT-CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEE
T ss_pred HHHHhcC-cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEE
Confidence 6666655 46788888889999999984 478999999999999873
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=157.23 Aligned_cols=117 Identities=19% Similarity=0.359 Sum_probs=104.7
Q ss_pred HhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC---CHHHH
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEF 253 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~ 253 (390)
.+|..+|+|++ +.+|+.+++++ +||++||+||++||++|+.++|.|.+++++|+. .++.++.|++|. +.+.+
T Consensus 10 ~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~~~~~~~~~ 85 (145)
T 3erw_A 10 KQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPS---DSVKLVTVNLVNSEQNQQVV 85 (145)
T ss_dssp --CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCC---SSEEEEEEECGGGSSCHHHH
T ss_pred cCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCC---CCEEEEEEEccCCcCCHHHH
Confidence 45889999999 99999999999 999999999999999999999999999999975 689999999986 77888
Q ss_pred HHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 254 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.++...++ +.+|+..+....+++.|++.++|+++|+|++|+|+.+
T Consensus 86 ~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 130 (145)
T 3erw_A 86 EDFIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKT 130 (145)
T ss_dssp HHHHHHTT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEE
T ss_pred HHHHHHcC-CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEE
Confidence 88888766 4577766777899999999999999999999999987
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-21 Score=163.68 Aligned_cols=118 Identities=25% Similarity=0.394 Sum_probs=105.9
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC-HHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~ 256 (390)
.|..+|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|++ .++.|++|++|.+ .+.+.++
T Consensus 36 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~~ 112 (186)
T 1jfu_A 36 APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSG---PNFEVVAINIDTRDPEKPKTF 112 (186)
T ss_dssp SCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB---TTEEEEEEECCCSCTTHHHHH
T ss_pred CCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhcc---CCcEEEEEECCCCCHHHHHHH
Confidence 4888999999 999999999999999999999999999999999999999999975 7899999999975 4667777
Q ss_pred hhcCCcccccCCchHHHHHHHHcccc----ccceEEEECCCCcEEee
Q 016404 257 HSIMPWLAIPYEDRARQDLCRIFNIK----GIPALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~----~~P~~~lid~~G~v~~~ 299 (390)
...++...+|+..|....+.+.|++. ++|+++|||++|+|+.+
T Consensus 113 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~ 159 (186)
T 1jfu_A 113 LKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 159 (186)
T ss_dssp HHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred HHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEE
Confidence 77777656777777778899999986 89999999999999987
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=166.53 Aligned_cols=179 Identities=14% Similarity=0.188 Sum_probs=114.9
Q ss_pred CCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhh-CCCc--EEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 42 GKTICLFFSANW--CRPCKTFTPQLVQLYDTLRT-RGTE--LEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 42 gk~vll~F~a~~--C~~C~~~~p~l~~~~~~~~~-~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+++|+|.||++| |++|+.+.+.+.++++.... ++ + +.++.++.| ++ ..+++
T Consensus 25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~-~~~v~~~~vd~d--~~---------------------~~~~~ 80 (243)
T 2hls_A 25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNG-GKLLKLNVYYRE--SD---------------------SDKFS 80 (243)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETT-EESEEEEEEETT--TT---------------------HHHHH
T ss_pred CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCC-CceeEEEEecCC--cC---------------------HHHHH
Confidence 578899999999 99999999999999987522 11 1 455555443 33 68999
Q ss_pred hcCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCCe-e
Q 016404 117 RYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRK-I 195 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~~-~ 195 (390)
+|||.++|++++++ | ..... +.. ........+....... + ..+ .+ +... -
T Consensus 81 ~~gv~~~Pt~~i~~--g-~~~~~--------G~~---~~~~l~~fv~~~l~~~----------~-~~~--~l--~~~~~~ 131 (243)
T 2hls_A 81 EFKVERVPTVAFLG--G-EVRWT--------GIP---AGEEIRALVEVIMRLS----------E-DES--GL--EDATKE 131 (243)
T ss_dssp HTTCCSSSEEEETT--T-TEEEE--------SCC---CTTHHHHHHHHHHHHH----------T-TCC--CC--CHHHHH
T ss_pred hcCCCcCCEEEEEC--C-ceeEc--------CCC---cHHHHHHHHHHHHhcc----------C-CCC--CC--CHHHHH
Confidence 99999999999983 4 11111 110 0011111111100000 0 000 00 0000 0
Q ss_pred eecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHH
Q 016404 196 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 275 (390)
Q Consensus 196 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 275 (390)
.+.+++++++++.|||+||++|+.+.|.|++++..++.....++.+..|.++. +..+
T Consensus 132 ~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~-----------------------~~~~ 188 (243)
T 2hls_A 132 ALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE-----------------------NPDI 188 (243)
T ss_dssp HHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT-----------------------CHHH
T ss_pred HHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc-----------------------CHHH
Confidence 12245678899999999999999999999999999842011457777776664 3678
Q ss_pred HHHccccccceEEEECCCCcEEee
Q 016404 276 CRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 276 ~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
++.|+|.++||+++ +|++++.
T Consensus 189 ~~~~~V~~vPt~~i---~G~~~~~ 209 (243)
T 2hls_A 189 ADKYGVMSVPSIAI---NGYLVFV 209 (243)
T ss_dssp HHHTTCCSSSEEEE---TTEEEEE
T ss_pred HHHcCCeeeCeEEE---CCEEEEe
Confidence 88999999999988 7887633
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=155.23 Aligned_cols=128 Identities=35% Similarity=0.763 Sum_probs=110.9
Q ss_pred ceeecCCCccccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhh-CCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 26 EFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 26 ~~l~~~~g~~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
+.|.+.+|.+++++++||+++|+||++||++|+.++|.|.++++++++ .+ +++++|++|.+.+.+++|+++++|..+
T Consensus 12 f~l~~~~g~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~~~ 89 (146)
T 1o8x_A 12 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN--FEVVFCTWDEEEDGFAGYFAKMPWLAV 89 (146)
T ss_dssp CEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCCSHHHHHHHHTTCSSEEC
T ss_pred eEEEcCCCCCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCC--eEEEEEeCCCCHHHHHHHHHHCCceee
Confidence 468888888899999999999999999999999999999999999984 33 999999999999999999999999999
Q ss_pred ecCh-hHHHHHHHhcCcCCCCeEEEEc-CCCcccccccccccccc-CCCCCCCC
Q 016404 105 PFDE-TLHKKLRIRYRVDRIPSLIPLA-SDGTLIEEDLIGLIEDY-GADAYPFT 155 (390)
Q Consensus 105 ~~~~-~~~~~l~~~~~v~~~P~~~~~d-~~G~i~~~~~~~~i~~~-~~~~~~~~ 155 (390)
|+.. +....+++.|++.++|+++++| ++|+++.+.+...+... ....++|.
T Consensus 90 ~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~ 143 (146)
T 1o8x_A 90 PFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWK 143 (146)
T ss_dssp CGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCC
T ss_pred ccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCC
Confidence 9854 6678999999999999999999 89999988876655543 33344443
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-21 Score=153.24 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=103.5
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhh
Q 016404 180 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 258 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 258 (390)
|.++|+|++ +.+|+.+++++++||+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.+.+.+.++..
T Consensus 2 ~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~ 76 (136)
T 1zzo_A 2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----EVTFVGVAGLDQVPAMQEFVN 76 (136)
T ss_dssp CCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSSCHHHHHHHHH
T ss_pred CCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-----CeEEEEEeCCCCHHHHHHHHH
Confidence 456899999 99999999999999999999999999999999999999999874 689999999998999999998
Q ss_pred cCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 259 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+++..+|...+....+++.|++.++|+++++|++|+++ +
T Consensus 77 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~ 116 (136)
T 1zzo_A 77 KYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-V 116 (136)
T ss_dssp HTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-E
T ss_pred HcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-E
Confidence 877657777667778999999999999999999999998 5
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.6e-21 Score=157.35 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=114.2
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec--CCCHHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST--DRDHKEFDL 255 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~--d~~~~~~~~ 255 (390)
+|.++|+|.+ +.+|+.+++++++ |++||+||++||++|+.++|.|.+++++| ++.+++|++ +.+.+.+.+
T Consensus 7 ~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~------~v~~v~v~~d~~~~~~~~~~ 79 (154)
T 3ia1_A 7 PGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET------GVPFYVISREPRDTREVVLE 79 (154)
T ss_dssp SBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH------CCCEEEEECCTTCCHHHHHH
T ss_pred CCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc------CCeEEEEeCCCcccHHHHHH
Confidence 4888999999 9999999999999 99999999999999999999999999998 368999999 567788889
Q ss_pred hhhcCCcccccCCch---HHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcC
Q 016404 256 NHSIMPWLAIPYEDR---ARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 332 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~---~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 332 (390)
+++.+++ .+|...+ ....+++.|++.++|+++|||++|+|+.+ ..|... .++|.+.+++..+
T Consensus 80 ~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~-------~~g~~~-------~~~l~~~l~~~~~ 144 (154)
T 3ia1_A 80 YMKTYPR-FIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVAL-------FAGRAG-------REALLDALLLAGA 144 (154)
T ss_dssp HHTTCTT-EEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEE-------EESBCC-------HHHHHHHHHHTTC
T ss_pred HHHHcCC-CcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEE-------EcCCCC-------HHHHHHHHHhccC
Confidence 8887774 5666554 67899999999999999999999999987 345443 6677777777665
Q ss_pred CCC
Q 016404 333 ALP 335 (390)
Q Consensus 333 ~~p 335 (390)
..+
T Consensus 145 ~~~ 147 (154)
T 3ia1_A 145 DLE 147 (154)
T ss_dssp CC-
T ss_pred ccc
Confidence 544
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-21 Score=159.21 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=113.4
Q ss_pred HhhccCCceEE-eCCCCeeeecccCCc-EEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
.+|..+|+|++ +.+|+.+++++++|| ++||+|| ++||++|+.++|.|.+++++|++ .+++|++|++| +.+...
T Consensus 10 ~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vv~is~d-~~~~~~ 85 (160)
T 1xvw_A 10 NVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN---DDSAALAISVG-PPPTHK 85 (160)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS---SSEEEEEEESC-CHHHHH
T ss_pred CCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCcEEEEEeCC-CHHHHH
Confidence 35889999999 999999999999998 9999998 99999999999999999999975 68999999998 456777
Q ss_pred HhhhcCCcccccCCchH--HHHHHHHcccc----ccc--eEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHH
Q 016404 255 LNHSIMPWLAIPYEDRA--RQDLCRIFNIK----GIP--ALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETA 326 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~--~~~l~~~~~v~----~~P--~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~ 326 (390)
++.+.+++ .+|+..|. ...+++.|++. ++| +++|||++|+|+++. .|.. ..+..++++.+.
T Consensus 86 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~-------~g~~---~~~~~~~~l~~~ 154 (160)
T 1xvw_A 86 IWATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE-------MKQP---GEVRDQRLWTDA 154 (160)
T ss_dssp HHHHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE-------ECCT---TCCCCHHHHHHH
T ss_pred HHHHhcCC-CceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEE-------ecCC---CCCCCHHHHHHH
Confidence 77776664 56666664 67899999998 999 999999999999883 3432 223356677666
Q ss_pred HHH
Q 016404 327 LKK 329 (390)
Q Consensus 327 ~~~ 329 (390)
+++
T Consensus 155 l~~ 157 (160)
T 1xvw_A 155 LAA 157 (160)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-21 Score=162.34 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=102.1
Q ss_pred hhccCCceEE-eC--CCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCce------EEEEEecCC-
Q 016404 179 LAIEGRDYVL-SR--DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF------EVVLVSTDR- 248 (390)
Q Consensus 179 ~g~~~p~f~l-~~--~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~------~vv~v~~d~- 248 (390)
.|.++|+|++ +. +|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++ .|++|++|.
T Consensus 33 ~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~~~~~v~~v~v~~d~~ 109 (183)
T 3lwa_A 33 DRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQA---AGNGDTPGGTVLGINVRDY 109 (183)
T ss_dssp GCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH---CC---CCSEEEEEEECSCC
T ss_pred cCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHh---cCCCccCCcEEEEEECCCC
Confidence 4788999999 88 9999999999999999999999999999999999999999986 556 999999998
Q ss_pred CHHHHHHhhhcCCcccccCCchHHHHHHHHc---cccccceEEEECCCCcEEee
Q 016404 249 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIF---NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~v~~~P~~~lid~~G~v~~~ 299 (390)
+.+.++++...++ +.+|...+....+.+.| ++.++|+++|||++|+|+.+
T Consensus 110 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 162 (183)
T 3lwa_A 110 SRDIAQDFVTDNG-LDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAV 162 (183)
T ss_dssp CHHHHHHHHHHTT-CCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEE
T ss_pred CHHHHHHHHHHcC-CCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEE
Confidence 7888888888666 34566566666777776 58999999999999999987
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-21 Score=189.43 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=63.0
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
+..++.+ +.-.-.++++++|.|||+||++|+.+.|.|.++++.+++.+ +.++.|+++ .+
T Consensus 16 v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~--v~~~~vd~~--~~---------------- 75 (504)
T 2b5e_A 16 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCT--EN---------------- 75 (504)
T ss_dssp CEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETT--TC----------------
T ss_pred cEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCC--eEEEEEECC--CC----------------
Confidence 3444444 33222358999999999999999999999999999998754 555555544 33
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
..++++|+|.++||++++. +|+.
T Consensus 76 -----~~l~~~~~v~~~Pt~~~~~-~g~~ 98 (504)
T 2b5e_A 76 -----QDLCMEHNIPGFPSLKIFK-NSDV 98 (504)
T ss_dssp -----HHHHHHTTCCSSSEEEEEE-TTCT
T ss_pred -----HHHHHhcCCCcCCEEEEEe-CCcc
Confidence 6899999999999999996 5664
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=153.30 Aligned_cols=118 Identities=39% Similarity=0.807 Sum_probs=106.3
Q ss_pred eeecCCCccccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhh-CCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 27 ~l~~~~g~~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
.|.+.+|.+++++++||+++|+||++||++|+.++|.|.++++++++ .+ +++++|++|.+.+.+++++++++|..+|
T Consensus 13 ~l~~~~g~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~i~~d~~~~~~~~~~~~~~~~~~~ 90 (144)
T 1o73_A 13 NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FEVVLISWDENESDFHDYYGKMPWLALP 90 (144)
T ss_dssp CBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHHHHHTTCSSEECC
T ss_pred EeecCCCcCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHHHHHHhCCceEee
Confidence 58888888999999999999999999999999999999999999983 33 9999999999999999999999999999
Q ss_pred cCh-hHHHHHHHhcCcCCCCeEEEEc-CCCccccccccccccc
Q 016404 106 FDE-TLHKKLRIRYRVDRIPSLIPLA-SDGTLIEEDLIGLIED 146 (390)
Q Consensus 106 ~~~-~~~~~l~~~~~v~~~P~~~~~d-~~G~i~~~~~~~~i~~ 146 (390)
+.. +....+++.|++.++|+++++| ++|+++.+.+...+..
T Consensus 91 ~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~ 133 (144)
T 1o73_A 91 FDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIE 133 (144)
T ss_dssp TTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHH
T ss_pred ccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhh
Confidence 853 6678899999999999999999 8999998887665544
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-21 Score=161.03 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=105.7
Q ss_pred HHhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC--------
Q 016404 177 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------- 247 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-------- 247 (390)
..+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|+ ++.|++|++|
T Consensus 11 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-----~v~vv~i~~d~~~~~~~~ 85 (165)
T 3ha9_A 11 EEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-----EISVIAIDFWTAEALKAL 85 (165)
T ss_dssp HHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----TEEEEEEECCSHHHHHHH
T ss_pred ccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-----CcEEEEEEeccccccccc
Confidence 346889999999 99999999999999999999999999999999999999999984 6999999999
Q ss_pred ----------CCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEe
Q 016404 248 ----------RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 248 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 298 (390)
.+.+.++++.+.+++..+|...+ ...+.+.|+|.++|+++|||++|+|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 86 GLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY 145 (165)
T ss_dssp TCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred ccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence 68888999988777557777666 789999999999999999999999998
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=155.17 Aligned_cols=118 Identities=19% Similarity=0.388 Sum_probs=99.3
Q ss_pred cCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhccc-CCceEEEEEecCCC---HHHHHH
Q 016404 182 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTA-NHCFEVVLVSTDRD---HKEFDL 255 (390)
Q Consensus 182 ~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~~vv~v~~d~~---~~~~~~ 255 (390)
.+|+|++ +.+|+++++++++||++||+||++||++ |+.++|.|++++++|++.. ..+++|++|++|.+ .+.+++
T Consensus 2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~ 81 (164)
T 2ggt_A 2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN 81 (164)
T ss_dssp CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence 4799999 9999999999999999999999999998 9999999999999997411 14899999999873 567777
Q ss_pred hhhcCC--cccccCCchHHHHHHHHccccccc---------------eEEEECCCCcEEee
Q 016404 256 NHSIMP--WLAIPYEDRARQDLCRIFNIKGIP---------------ALVLIGPDGKTIST 299 (390)
Q Consensus 256 ~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P---------------~~~lid~~G~v~~~ 299 (390)
+.+.++ |..+....+....+++.|++..+| +++|||++|+|+.+
T Consensus 82 ~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 142 (164)
T 2ggt_A 82 YVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 142 (164)
T ss_dssp HHHTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred HHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence 777555 333332346667899999999999 89999999999987
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=160.42 Aligned_cols=118 Identities=24% Similarity=0.268 Sum_probs=103.0
Q ss_pred hhccCCceEE-eCCCC----eeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHH
Q 016404 179 LAIEGRDYVL-SRDHR----KITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~----~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
+|..+|+|++ +.+|+ .+++++++||++||+|| ++||++|+.++|.|.+++++|++ .+++|++|++|. .+.
T Consensus 3 ~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~vs~d~-~~~ 78 (187)
T 1we0_A 3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK---LGVEVYSVSTDT-HFV 78 (187)
T ss_dssp TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH---TTEEEEEEESSC-HHH
T ss_pred CCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHH---cCCEEEEEECCC-HHH
Confidence 5888999999 88999 99999999999999999 99999999999999999999986 689999999986 455
Q ss_pred HHHhhhcCC---cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
..++.+.+. -+.+|+..|....+++.|++. ++|+++|||++|+|+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~ 135 (187)
T 1we0_A 79 HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIE 135 (187)
T ss_dssp HHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEE
Confidence 666666552 245666666678999999998 999999999999999883
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=164.60 Aligned_cols=119 Identities=12% Similarity=0.185 Sum_probs=103.1
Q ss_pred HhhccCCceEE-eC--CC--Ceeeeccc-CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH
Q 016404 178 LLAIEGRDYVL-SR--DH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250 (390)
Q Consensus 178 l~g~~~p~f~l-~~--~g--~~~~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~ 250 (390)
.+|.++|+|++ +. +| ++++++++ +||+|||+|| ++||++|+.++|.|++++++|++ .+++||+|++|. .
T Consensus 26 ~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~---~~v~vv~Is~D~-~ 101 (221)
T 2c0d_A 26 LVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN---KNVELLGISVDS-V 101 (221)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHH---TTEEEEEEESSC-H
T ss_pred CCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-H
Confidence 36899999999 77 89 99999999 9999999999 99999999999999999999986 789999999985 4
Q ss_pred HHHHHhhhcC----C--cccccCCchHHHHHHHHccc-----cccceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHSIM----P--WLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~----~--~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~v~~~~ 300 (390)
+...++.+.. + .+.+|+..|....+++.|++ ..+|++||||++|+|+++.
T Consensus 102 ~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~ 162 (221)
T 2c0d_A 102 YSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQT 162 (221)
T ss_dssp HHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEE
Confidence 4555566554 1 35677777777899999999 4799999999999999983
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=157.64 Aligned_cols=114 Identities=15% Similarity=0.320 Sum_probs=100.9
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 257 (390)
+|..+|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++ .++.++.|+.|.+ +.+++
T Consensus 17 ~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~~---~~~~~ 90 (158)
T 3hdc_A 17 TGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPK---GDLVVLAVNVEKR---FPEKY 90 (158)
T ss_dssp TTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSST---TSEEEEEEECSSS---CCGGG
T ss_pred CCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHccc---CCeEEEEEeCCHH---HHHHH
Confidence 5899999999 999999999999999999999999999999999999999999975 7899999999874 34444
Q ss_pred hcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 258 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
...+ +.+++..+....+.+.|++.++|+++|||++|+|+.+
T Consensus 91 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 131 (158)
T 3hdc_A 91 RRAP-VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQR 131 (158)
T ss_dssp GGCC-CSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred HHcC-CCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEE
Confidence 4444 3466666777899999999999999999999999988
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=151.82 Aligned_cols=111 Identities=21% Similarity=0.272 Sum_probs=100.7
Q ss_pred cCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcC
Q 016404 182 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 260 (390)
Q Consensus 182 ~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 260 (390)
.+|+|++ +.+|+.+++++++||+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.+.+.+.++...+
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~ 77 (136)
T 1lu4_A 3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----AVTFVGIATRADVGAMQSFVSKY 77 (136)
T ss_dssp GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSSCHHHHHHHHHHH
T ss_pred CCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-----CcEEEEEEcCCCHHHHHHHHHHc
Confidence 5789999 99999999999999999999999999999999999999999874 68999999999888999988876
Q ss_pred CcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 261 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
++ .+|...+....+++.|++.++|+++++|++|+++ +
T Consensus 78 ~~-~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~ 114 (136)
T 1lu4_A 78 NL-NFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-F 114 (136)
T ss_dssp TC-CSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-E
T ss_pred CC-CceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-E
Confidence 64 5666667778999999999999999999999998 5
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-21 Score=155.79 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=103.2
Q ss_pred hhccCCceEE---eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-----CH
Q 016404 179 LAIEGRDYVL---SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DH 250 (390)
Q Consensus 179 ~g~~~p~f~l---~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~ 250 (390)
+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.+.|.|.+++++|++ . +.+++|++|. +.
T Consensus 3 ~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~-~~~~~v~~~~~~~~~~~ 78 (148)
T 2b5x_A 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD---Q-LNVVAVHMPRSEDDLDP 78 (148)
T ss_dssp TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT---T-SEEEEEECCCSTTTSSH
T ss_pred CCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC---C-cEEEEEEcCCCccccCH
Confidence 4788999986 789999999999999999999999999999999999999999974 3 9999999876 56
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.+.++...++ +.+|+..+....+++.|++.++|+++++|++|+++.+
T Consensus 79 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 126 (148)
T 2b5x_A 79 GKIKETAAEHD-ITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHF 126 (148)
T ss_dssp HHHHHHHHHTT-CCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred HHHHHHHHHcC-CCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence 78888888766 3666666667889999999999999999999999987
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-21 Score=163.26 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=109.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|.++|+|++ +.+|+++++++++||++||+|| ++||++|..++|.|++++++|++ .+++|++|+.|. .+...++
T Consensus 27 ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~---~~~~vv~Vs~D~-~~~~~~~ 102 (179)
T 3ixr_A 27 LNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQ---INATVLGVSRDS-VKSHDSF 102 (179)
T ss_dssp CCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEESCC-HHHHHHH
T ss_pred cCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHH
Confidence 3444999999 9999999999999999999998 99999999999999999999986 789999999984 5556666
Q ss_pred hhcCCcccccCCchHHHHHHHHccccc------------cceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHH
Q 016404 257 HSIMPWLAIPYEDRARQDLCRIFNIKG------------IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE 324 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~ 324 (390)
.+.++ +.+|+..|....+++.|++.. .|++||||++|+|++.. .+. .....++++.
T Consensus 103 ~~~~~-~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~-------~~~----~~~~~~~~il 170 (179)
T 3ixr_A 103 CAKQG-FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW-------RQV----KVPGHAEEVL 170 (179)
T ss_dssp HHHHT-CCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE-------CSC----CSTTHHHHHH
T ss_pred HHHcC-CceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE-------cCC----CCCCCHHHHH
Confidence 66544 456777777889999999864 68999999999999873 221 1234466666
Q ss_pred HHHHHh
Q 016404 325 TALKKE 330 (390)
Q Consensus 325 ~~~~~~ 330 (390)
+.+++.
T Consensus 171 ~~l~~l 176 (179)
T 3ixr_A 171 NKLKAH 176 (179)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-20 Score=161.58 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=93.7
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|++ .+++|++|++|. +.
T Consensus 25 ~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~---~~v~vv~vs~d~~~~~e~~~~ 101 (181)
T 2p31_A 25 QEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGP---HHFNVLAFPCNQFGQQEPDSN 101 (181)
T ss_dssp --CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSCH
T ss_pred cCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhc---CCEEEEEEECcCCCCCCCCCH
Confidence 5888999999 999999999999999999999999999999999999999999986 679999999974 56
Q ss_pred HHHHHhhhc-CCcccccCCc--hHHHHH---HHHccccccc-------eEEEECCCCcEEee
Q 016404 251 KEFDLNHSI-MPWLAIPYED--RARQDL---CRIFNIKGIP-------ALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~~-~~~~~~~~~~--~~~~~l---~~~~~v~~~P-------~~~lid~~G~v~~~ 299 (390)
+++.++++. ++ +.+|... +.+... .-.|++.++| +++|||++|+|+.+
T Consensus 102 ~~~~~~~~~~~~-~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~ 162 (181)
T 2p31_A 102 KEIESFARRTYS-VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGA 162 (181)
T ss_dssp HHHHHHHHHHHC-CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHhhcC-CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEE
Confidence 677777765 44 3344432 111111 1135678889 99999999999988
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=160.12 Aligned_cols=116 Identities=12% Similarity=0.178 Sum_probs=103.5
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
+|..+|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|++ . +.|++|++|. +.
T Consensus 9 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~-~~~v~v~~d~~~~~~~d~~ 84 (188)
T 2cvb_A 9 LESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG---K-VAFVGINANDYEKYPEDAP 84 (188)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT---T-EEEEEEECCCTTTCGGGSH
T ss_pred CCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhc---C-eEEEEEEcCccccccccCH
Confidence 5888999999 999999999999999999999999999999999999999999985 5 9999999963 55
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.+.++.+.++ +.+|+..|.+..+++.|++.++|+++|||++|+|+++
T Consensus 85 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 85 EKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp HHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred HHHHHHHHHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEE
Confidence 67777777665 3566666767889999999999999999999999988
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-21 Score=159.26 Aligned_cols=127 Identities=21% Similarity=0.290 Sum_probs=106.3
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-----CHHHHHHhhhcCCcc
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DHKEFDLNHSIMPWL 263 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~ 263 (390)
+.+|+.+++++++||++||+||++||++|+.++|.|.+++++|+. .++.||+|++|. +.+.+.+++..+++.
T Consensus 25 ~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~ 101 (164)
T 2h30_A 25 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKF---SSANLITVASPGFLHEKKDGEFQKWYAGLNYP 101 (164)
T ss_dssp ETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGG---TTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred CCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc---CCcEEEEEEcCCCccccCHHHHHHHHHhCCCC
Confidence 899999999999999999999999999999999999999999976 779999999863 456788888777765
Q ss_pred cccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcC
Q 016404 264 AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 332 (390)
Q Consensus 264 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 332 (390)
.++...+....+++.|+|.++|+++|||++|+++.+ ..|... .+++.+.+++...
T Consensus 102 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~-------~~g~~~-------~~~l~~~i~~~~~ 156 (164)
T 2h30_A 102 KLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRI-------VKGSIN-------EAQALALIRNPNA 156 (164)
T ss_dssp TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEE-------EESCCC-------HHHHHHHHHCTTC
T ss_pred cceEEEcCchHHHHHcCCCccceEEEECCCCcEEEE-------EcCCCC-------HHHHHHHHHHHHH
Confidence 567766777899999999999999999999999987 345333 4566666665444
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=192.31 Aligned_cols=182 Identities=13% Similarity=0.143 Sum_probs=124.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.++.++|.||+|||++|+.+.|.+.++++.+++. |+++.+|++.. ..++++|++
T Consensus 562 ~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~-----v~~~~vd~~~~---------------------~~l~~~~~v 615 (780)
T 3apo_A 562 HDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL-----INVGSVDCGQY---------------------HSFCTQENV 615 (780)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-----SEEEEEETTTT---------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC-----eEEEEEECcch---------------------HHHHHHcCC
Confidence 3678999999999999999999999999999864 55555555543 678999999
Q ss_pred CCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCCeeee-cc
Q 016404 121 DRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITV-SE 199 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~~~~l-~~ 199 (390)
.++|+++++..++... ..... +. ........+..+. ....+......+++.+.- -.
T Consensus 616 ~~~Pti~~~~~~~~~~-~~~~~----y~--g~~~~~~~l~~fi----------------~~~~~~~v~~l~~~~~~~~~~ 672 (780)
T 3apo_A 616 QRYPEIRFYPQKSSKA-YQYHS----YN--GWNRDAYSLRSWG----------------LGFLPQASIDLTPQTFNEKVL 672 (780)
T ss_dssp CSSSEEEEECCCSSSC-CSCEE----CC--CSCCSHHHHHHHH----------------HTTSCCCSEEECHHHHHHHTT
T ss_pred CCCCeEEEEcCCCcCc-cchhh----cC--CCCCCHHHHHHHH----------------hhhcccccccCCHHHHHHHHh
Confidence 9999999997433211 00000 00 0001111111111 111111111233333321 11
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
-.+++++|+|||+||++|+.+.|.+.+++++++ .++.++.|.++.. ..+++.|
T Consensus 673 ~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~ 725 (780)
T 3apo_A 673 QGKTHWVVDFYAPWSGPSQNFAPEFELLARMIK----GKVRAGKVDCQAY-----------------------PQTCQKA 725 (780)
T ss_dssp TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEETTTC-----------------------HHHHHHT
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCceEEEEECCCC-----------------------HHHHHhc
Confidence 246899999999999999999999999999996 4678888887653 6789999
Q ss_pred cccccceEEEECCCCcEEee
Q 016404 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|.++|+++++ ++|+++.+
T Consensus 726 ~v~~~Pt~~~~-~~g~~~~~ 744 (780)
T 3apo_A 726 GIKAYPSVKLY-QYERAKKS 744 (780)
T ss_dssp TCCSSSEEEEE-EEETTTTE
T ss_pred CCCcCCEEEEE-cCCCcccc
Confidence 99999999999 77776543
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-21 Score=164.26 Aligned_cols=117 Identities=20% Similarity=0.245 Sum_probs=93.5
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------CCHH
Q 016404 180 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHK 251 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~ 251 (390)
+.++|+|++ +.+|+++++++++||+|||+||++||++|+.++|.|++++++|++ .+++||+|++| .+.+
T Consensus 23 ~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~---~~~~vi~is~d~~~~~e~~~~~ 99 (187)
T 3dwv_A 23 ASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS---QGFTVLAFPSNQFGGQEPGNEE 99 (187)
T ss_dssp CCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGG---GTCEEEEEEBCCCSSCSSSBTT
T ss_pred CCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhh---CCeEEEEEECcccCCCCCCCHH
Confidence 567899999 999999999999999999999999999999999999999999986 67999999998 3457
Q ss_pred HHHHhhhcCCcccccCCc--hHHH----HHH--------HHccccccc---eEEEECCCCcEEee
Q 016404 252 EFDLNHSIMPWLAIPYED--RARQ----DLC--------RIFNIKGIP---ALVLIGPDGKTIST 299 (390)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~--~~~~----~l~--------~~~~v~~~P---~~~lid~~G~v~~~ 299 (390)
++.+++...--+.+|... +... .+. ..+++..+| +++|||++|+|+.+
T Consensus 100 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~ 164 (187)
T 3dwv_A 100 EIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVER 164 (187)
T ss_dssp HHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEE
Confidence 788877733123344432 1111 111 334667788 99999999999988
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=162.06 Aligned_cols=119 Identities=15% Similarity=0.160 Sum_probs=104.2
Q ss_pred HhhccCCceEE-eC--CC--Ceeeeccc-CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH
Q 016404 178 LLAIEGRDYVL-SR--DH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250 (390)
Q Consensus 178 l~g~~~p~f~l-~~--~g--~~~~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~ 250 (390)
.+|.++|+|++ +. +| +.++++++ +||++||+|| ++||++|+.++|.|.+++++|++ .+++||+|++|. .
T Consensus 22 ~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~D~-~ 97 (213)
T 2i81_A 22 YVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE---RNVELLGCSVDS-K 97 (213)
T ss_dssp CBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHH---TTEEEEEEESSC-H
T ss_pred cCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-H
Confidence 36899999999 77 89 89999999 9999999999 99999999999999999999986 789999999984 4
Q ss_pred HHHHHhhhcCC------cccccCCchHHHHHHHHcccc-----ccceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHSIMP------WLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~ 300 (390)
+...++.+... .+.+|+..|....+++.|++. .+|+++|||++|+|+++.
T Consensus 98 ~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~ 158 (213)
T 2i81_A 98 YTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLL 158 (213)
T ss_dssp HHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEE
Confidence 55666665441 356777777788999999999 899999999999999883
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=159.93 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=103.3
Q ss_pred hhccCCceEE-eC--CC--Ceeeeccc-CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHH
Q 016404 179 LAIEGRDYVL-SR--DH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 251 (390)
Q Consensus 179 ~g~~~p~f~l-~~--~g--~~~~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~ 251 (390)
+|.++|+|++ +. +| +.++++++ +||++||+|| ++||++|+.++|.|.+++++|++ .+++||+|++|. .+
T Consensus 2 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~Is~d~-~~ 77 (192)
T 2h01_A 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE---RNVELLGCSVDS-KF 77 (192)
T ss_dssp CSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH---TTEEEEEEESSC-HH
T ss_pred CCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEeCC-HH
Confidence 4788999999 77 89 99999999 9999999999 99999999999999999999986 789999999984 45
Q ss_pred HHHHhhhcCC------cccccCCchHHHHHHHHcccc-----ccceEEEECCCCcEEeeC
Q 016404 252 EFDLNHSIMP------WLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 252 ~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~ 300 (390)
...++.+.+. .+.+|+..|....+++.|++. .+|+++|||++|+|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~ 137 (192)
T 2h01_A 78 THLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLL 137 (192)
T ss_dssp HHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred HHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEE
Confidence 5666665541 456777777778999999999 899999999999999883
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=158.04 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=93.1
Q ss_pred HHhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------
Q 016404 177 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR------- 248 (390)
Q Consensus 177 ~l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~------- 248 (390)
...|.++|+|++ +.+|+.+++++++||+|||+||++||++|+.++|.|++++++|++ .++.||+|++|.
T Consensus 12 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~---~~~~vi~is~d~~~~~~~d 88 (180)
T 3kij_A 12 KPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGP---SHFSVLAFPCNQFGESEPR 88 (180)
T ss_dssp CCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTT---TSEEEEEEECCCSTTCCCS
T ss_pred cCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhcc---CCeEEEEEECCccccCCCC
Confidence 345788999999 999999999999999999999999999999999999999999986 689999999875
Q ss_pred CHHHHHHhhhc-CCcccccCC-----chHHH-HHHHHc--cccccce----EEEECCCCcEEee
Q 016404 249 DHKEFDLNHSI-MPWLAIPYE-----DRARQ-DLCRIF--NIKGIPA----LVLIGPDGKTIST 299 (390)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~~~~-----~~~~~-~l~~~~--~v~~~P~----~~lid~~G~v~~~ 299 (390)
+.+++.++.+. ++ +.+|.. .+... .+...+ .+.++|+ ++|||++|+|+.+
T Consensus 89 ~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~ 151 (180)
T 3kij_A 89 PSKEVESFARKNYG-VTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 151 (180)
T ss_dssp CHHHHHHHHHHHHC-CCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEE
T ss_pred CHHHHHHHHHHhcC-CCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEE
Confidence 66777777765 44 233331 11111 111111 1346888 9999999999988
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=158.35 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=101.5
Q ss_pred hhccCCceEE-eC-CC--CeeeecccCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHH
Q 016404 179 LAIEGRDYVL-SR-DH--RKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253 (390)
Q Consensus 179 ~g~~~p~f~l-~~-~g--~~~~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~ 253 (390)
+|.++|+|++ +. +| +.+++++++||+|||+||+ +||++|+.++|.|++++++|++ .+++||+|++|. .+..
T Consensus 3 ~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~---~~v~vv~Is~d~-~~~~ 78 (186)
T 1n8j_A 3 INTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK---LGVDVYSVSTDT-HFTH 78 (186)
T ss_dssp TTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH---TTEEEEEEESSC-HHHH
T ss_pred CCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHH---CCCEEEEEECCC-HHHH
Confidence 5889999999 77 58 8999999999999999995 9999999999999999999986 789999999985 4555
Q ss_pred HHhhhcCC---cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 254 DLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 254 ~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
.++.+.++ -+.+|+..|....+++.||+. .+|+++|||++|+|+++.
T Consensus 79 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~ 134 (186)
T 1n8j_A 79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 134 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEE
Confidence 66666552 245677777778999999997 479999999999999883
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-20 Score=154.52 Aligned_cols=116 Identities=19% Similarity=0.327 Sum_probs=96.9
Q ss_pred CceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcc-cCCceEEEEEecCC---CHHHHHHhh
Q 016404 184 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDR---DHKEFDLNH 257 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~-~~~~~~vv~v~~d~---~~~~~~~~~ 257 (390)
|+|++ +.+|+.+++++++||++||+||++||++ |+.++|.|++++++|++. ...+++||+|++|. +.+.++++.
T Consensus 7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~ 86 (171)
T 2rli_A 7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV 86 (171)
T ss_dssp SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence 89999 9999999999999999999999999998 999999999999999631 12589999999985 456777777
Q ss_pred hcCC--cccccCCchHHHHHHHHccccccc---------------eEEEECCCCcEEee
Q 016404 258 SIMP--WLAIPYEDRARQDLCRIFNIKGIP---------------ALVLIGPDGKTIST 299 (390)
Q Consensus 258 ~~~~--~~~~~~~~~~~~~l~~~~~v~~~P---------------~~~lid~~G~v~~~ 299 (390)
+.++ |..+....+....+++.|++..+| +++|||++|+|+.+
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 145 (171)
T 2rli_A 87 QDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY 145 (171)
T ss_dssp HTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred HHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence 7555 333322334456899999999888 89999999999987
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-20 Score=155.81 Aligned_cols=120 Identities=20% Similarity=0.320 Sum_probs=98.0
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCc-ccHhhHHHHHHHHHHhhcccCCceEEEEEecCC---CHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEF 253 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~ 253 (390)
+|..+|+|++ +.+|+.+++++++||++||+||++||+ +|+.++|.|.+++++|++ .+.+++||+|++|. +.+.+
T Consensus 9 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~-~~~~~~vv~is~d~~~d~~~~~ 87 (174)
T 1xzo_A 9 LNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA-ENIDVRIISFSVDPENDKPKQL 87 (174)
T ss_dssp CCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH-TTCCCEEEEEESCTTTCCHHHH
T ss_pred cccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhh-cCCcEEEEEEEeCCCCCCHHHH
Confidence 5889999999 999999999999999999999999999 999999999999999986 22259999999984 56778
Q ss_pred HHhhhcCCc--ccccCCchHHHHHHHHc----------------cccccceEEEECCCCcEEee
Q 016404 254 DLNHSIMPW--LAIPYEDRARQDLCRIF----------------NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 254 ~~~~~~~~~--~~~~~~~~~~~~l~~~~----------------~v~~~P~~~lid~~G~v~~~ 299 (390)
.++.+.++. ..+++..+.+..+.+.| ++..+|+++|||++|+|+.+
T Consensus 88 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 151 (174)
T 1xzo_A 88 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 151 (174)
T ss_dssp HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence 888876653 12255444344444443 45778999999999999987
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-22 Score=163.18 Aligned_cols=121 Identities=39% Similarity=0.746 Sum_probs=106.4
Q ss_pred cCCceEE-eCCCCeeeecc-cCCc-EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhh
Q 016404 182 EGRDYVL-SRDHRKITVSE-LAGK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 258 (390)
Q Consensus 182 ~~p~f~l-~~~g~~~~l~~-~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 258 (390)
.+|+|++ +.+|+.+++++ ++|| +++|+||++||++|+.++|.|.+++++|++ ...++.+++|++|.+.+.+.++++
T Consensus 3 ~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~~v~~d~~~~~~~~~~~ 81 (143)
T 2lus_A 3 FIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVD-DSAPFEIIFVSSDRSEDDMFQYMM 81 (143)
Confidence 4688999 99999999999 9999 999999999999999999999999999953 225799999999988788888887
Q ss_pred cC--CcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcch
Q 016404 259 IM--PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKE 303 (390)
Q Consensus 259 ~~--~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~ 303 (390)
.+ +|..+++..+....+++.|+|.++|+++|||++|++++++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 128 (143)
T 2lus_A 82 ESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG 128 (143)
Confidence 55 5777777777778899999999999999999999999987643
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=159.01 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=102.2
Q ss_pred hhccCCceEE-eCC-------------C--CeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEE
Q 016404 179 LAIEGRDYVL-SRD-------------H--RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEV 241 (390)
Q Consensus 179 ~g~~~p~f~l-~~~-------------g--~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~v 241 (390)
+|..+|+|++ +.+ | +.+++++++||++||+|| ++||++|+.++|.|.+++++|++ .+++|
T Consensus 6 ~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~v 82 (195)
T 2bmx_A 6 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED---RDAQI 82 (195)
T ss_dssp TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT---TTEEE
T ss_pred CCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH---CCCEE
Confidence 5889999999 776 7 899999999999999999 99999999999999999999985 68999
Q ss_pred EEEecCCCHHHHHHhhhcCC---cccccCCchHHHHHHHHcccc-----ccceEEEECCCCcEEeeC
Q 016404 242 VLVSTDRDHKEFDLNHSIMP---WLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 242 v~v~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~ 300 (390)
|+|++|. .+...++.+.+. -+.+|+..|....+++.|++. ++|+++|||++|+|+++.
T Consensus 83 v~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~ 148 (195)
T 2bmx_A 83 LGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS 148 (195)
T ss_dssp EEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred EEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEE
Confidence 9999986 556666666551 245666666678999999999 999999999999999983
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-20 Score=150.28 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=98.6
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHH---HHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ---LYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~---~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.+.+.+.+|+ +++++++||+++|+||++||++|+.++|.|.+ +++++++.+ +++++|+.|.+.+.+++++++++
T Consensus 13 ~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~--~~vi~i~~d~~~~~~~~~~~~~~ 90 (142)
T 3eur_A 13 NFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSIYPDEELDEWKKHRNDFA 90 (142)
T ss_dssp CCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTS--EEEEEEECSSCHHHHHHHGGGSC
T ss_pred CcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCC--eEEEEEEcCCCHHHHHHHHHhcc
Confidence 3559999999 99999999999999999999999999999999 999998766 99999999999899999999887
Q ss_pred Ccceec--ChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016404 101 WLAVPF--DETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 101 ~~~~~~--~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
. .++. +.+....+++.|++.++|+++++|++|+++.+..
T Consensus 91 ~-~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 131 (142)
T 3eur_A 91 K-EWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA 131 (142)
T ss_dssp T-TSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEE
T ss_pred c-ccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCC
Confidence 3 2333 4444455789999999999999999999987653
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-20 Score=159.62 Aligned_cols=118 Identities=13% Similarity=0.165 Sum_probs=102.8
Q ss_pred hhccCCceEE-eC--CCC---eeeeccc-CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH
Q 016404 179 LAIEGRDYVL-SR--DHR---KITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~--~g~---~~~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~ 250 (390)
+|.++|+|++ +. +|+ .++++++ +||++||+|| ++||++|+.++|.|.+++++|++ .+++|++|++|. .
T Consensus 3 ~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~d~-~ 78 (198)
T 1zof_A 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE---KGFNVIGVSIDS-E 78 (198)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH---TTEEEEEEESSC-H
T ss_pred CCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEECCC-H
Confidence 5889999999 77 898 9999999 9999999999 99999999999999999999986 689999999995 4
Q ss_pred HHHHHhhhcC------CcccccCCchHHHHHHHHcccc-----ccceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHSIM------PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~ 300 (390)
+...++.+.+ ..+.+|+..|....+++.|++. ++|+++|||++|+|+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~ 139 (198)
T 1zof_A 79 QVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV 139 (198)
T ss_dssp HHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred HHHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEE
Confidence 5566666551 2345677777778999999999 999999999999999883
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-20 Score=161.74 Aligned_cols=119 Identities=16% Similarity=0.276 Sum_probs=100.8
Q ss_pred HhhccCCceEE-eC-CC--CeeeecccCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHH
Q 016404 178 LLAIEGRDYVL-SR-DH--RKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 178 l~g~~~p~f~l-~~-~g--~~~~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
.+|.++|+|++ +. +| +++++++++||++||+||+ +||++|+.++|.|++++++|++ .+++||+|++|.. +.
T Consensus 41 ~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~---~~v~vv~Is~D~~-~~ 116 (222)
T 3ztl_A 41 LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNS---RNCQVIACSTDSQ-YS 116 (222)
T ss_dssp CSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCH-HH
T ss_pred cCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEECCCH-HH
Confidence 35899999999 55 55 9999999999999999996 9999999999999999999986 7899999999863 33
Q ss_pred HHHhhhcC------CcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
..++.+.+ ..+.+|+..|....+.+.|++. .+|++||||++|+|+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~ 176 (222)
T 3ztl_A 117 HLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQIT 176 (222)
T ss_dssp HHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEE
T ss_pred HHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEE
Confidence 34444332 2466777777778999999998 899999999999999983
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-20 Score=158.74 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=102.6
Q ss_pred hhccCCceEE-eC--CC--CeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHH
Q 016404 179 LAIEGRDYVL-SR--DH--RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 179 ~g~~~p~f~l-~~--~g--~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
+|.++|+|++ +. +| +.+++++++||++||+|| ++||++|+.++|.|.+++++|++ .+++||+|++|. .+.
T Consensus 8 ~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~---~~v~vi~Is~D~-~~~ 83 (202)
T 1uul_A 8 DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD---IGCEVLACSMDS-EYS 83 (202)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSC-HHH
T ss_pred CCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-HHH
Confidence 5899999999 66 78 899999999999999999 99999999999999999999986 789999999985 445
Q ss_pred HHHhhhcC----C--cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIM----P--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~----~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
..++.+.+ + .+.+|+..|....+++.|++. ++|+++|||++|+|+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~ 143 (202)
T 1uul_A 84 HLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 143 (202)
T ss_dssp HHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 55666544 1 356777777778999999999 999999999999999883
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=157.86 Aligned_cols=123 Identities=18% Similarity=0.277 Sum_probs=99.0
Q ss_pred HHhhccC--CceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCC---C
Q 016404 177 QLLAIEG--RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---D 249 (390)
Q Consensus 177 ~l~g~~~--p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~---~ 249 (390)
..+|.++ |+|++ +.+|+.+++++++||++||+||++||++ |+.++|.|.++++++.+....++.||+|++|. +
T Consensus 13 ~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~ 92 (200)
T 2b7k_A 13 RGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDS 92 (200)
T ss_dssp ---CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCC
T ss_pred hccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCC
Confidence 3457775 99999 9999999999999999999999999998 99999999999999874113589999999995 5
Q ss_pred HHHHHHhhhcCC--cccccCCchHHHHHHHHcccc-ccc---------------eEEEECCCCcEEee
Q 016404 250 HKEFDLNHSIMP--WLAIPYEDRARQDLCRIFNIK-GIP---------------ALVLIGPDGKTIST 299 (390)
Q Consensus 250 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~-~~P---------------~~~lid~~G~v~~~ 299 (390)
.+.+.++...++ |..++...+....+++.||+. +.| +++|||++|+|+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~ 160 (200)
T 2b7k_A 93 PAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA 160 (200)
T ss_dssp HHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred HHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEE
Confidence 677777777554 555555556678899999987 444 78999999999987
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-20 Score=156.24 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=93.0
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
+|.++|+|++ +.+|+.+++++++||+|||+||++||++|+.++|.|++++++|++ .++.|++|++|. +.
T Consensus 8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~vs~d~~~~~~~~~~ 84 (170)
T 2p5q_A 8 NPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKD---QGLEILAFPCNQFGEEEPGTN 84 (170)
T ss_dssp --CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCTTTTCCCSCH
T ss_pred CCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhcc---CCEEEEEEECCCCCCCCCCCH
Confidence 5888999999 999999999999999999999999999999999999999999986 679999999973 46
Q ss_pred HHHHHhhh-cCCcccccCC--chHHH----HHH-----HHccc--cccc---eEEEECCCCcEEee
Q 016404 251 KEFDLNHS-IMPWLAIPYE--DRARQ----DLC-----RIFNI--KGIP---ALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~-~~~~~~~~~~--~~~~~----~l~-----~~~~v--~~~P---~~~lid~~G~v~~~ 299 (390)
+.+.++++ .++ +.+|.. .|.+. .+. +.+++ .++| +++|||++|+|+.+
T Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~ 149 (170)
T 2p5q_A 85 DQITDFVCTRFK-SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR 149 (170)
T ss_dssp HHHHHHHHHHTC-CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHHhcC-CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence 67777776 433 234443 12111 122 23477 7888 99999999999988
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-20 Score=155.26 Aligned_cols=116 Identities=11% Similarity=0.103 Sum_probs=101.8
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|.++|+|++ +.+|+++++++++||++||+||++| |++|+.++|.|++++++| .+++|++|+.|. .+...++
T Consensus 20 ~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-----~~~~vv~is~d~-~~~~~~~ 93 (167)
T 2jsy_A 20 VGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-----GDVNVYTISADL-PFAQARW 93 (167)
T ss_dssp TTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-----SSCEEEEEECSS-GGGTSCC
T ss_pred CCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-----CCCEEEEEECCC-HHHHHHH
Confidence 4889999999 9999999999999999999999999 999999999999999998 358999999984 4556667
Q ss_pred hhcCCcccccCCch-HHHHHHHHccccc------cceEEEECCCCcEEeeC
Q 016404 257 HSIMPWLAIPYEDR-ARQDLCRIFNIKG------IPALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~------~P~~~lid~~G~v~~~~ 300 (390)
.+.+++..+|+..| ....+.+.|++.. .|+++|||++|+|+++.
T Consensus 94 ~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~ 144 (167)
T 2jsy_A 94 CGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAE 144 (167)
T ss_dssp GGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEE
T ss_pred HHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEE
Confidence 77666546777777 6788999999987 49999999999999983
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-20 Score=160.00 Aligned_cols=118 Identities=13% Similarity=0.170 Sum_probs=101.3
Q ss_pred hhccCCceEE-eC---CCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHH
Q 016404 179 LAIEGRDYVL-SR---DHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253 (390)
Q Consensus 179 ~g~~~p~f~l-~~---~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~ 253 (390)
+|.++|+|++ +. +|+.+++++++||++||+|| ++||++|..++|.|++++++|++ .+++||+|++|. .+..
T Consensus 21 ~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~---~~v~vv~Is~D~-~~~~ 96 (211)
T 2pn8_A 21 QSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS---INTEVVACSVDS-QFTH 96 (211)
T ss_dssp SSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSC-HHHH
T ss_pred CCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCC-HHHH
Confidence 5889999998 54 46899999999999999999 99999999999999999999986 789999999985 4455
Q ss_pred HHhhhcC----C--cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 254 DLNHSIM----P--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 254 ~~~~~~~----~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
.++.+.. + .+.+|+..|....+++.||+. .+|++||||++|+|+++.
T Consensus 97 ~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~ 155 (211)
T 2pn8_A 97 LAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT 155 (211)
T ss_dssp HHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEE
Confidence 5666544 1 356777777778999999995 699999999999999883
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=157.98 Aligned_cols=116 Identities=13% Similarity=0.063 Sum_probs=91.0
Q ss_pred hccCCceEE-eCC-CCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 180 AIEGRDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 180 g~~~p~f~l-~~~-g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
+..+|+|++ +.+ |+.+++++++||+|||+|||+||++|+.++|.|++++++|++ .+++||+|++|. +.
T Consensus 23 ~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~---~g~~vv~v~~d~~~~~e~d~~ 99 (208)
T 2f8a_A 23 MQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP---RGLVVLGFPCNQFGHQENAKN 99 (208)
T ss_dssp CCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTTTCSCH
T ss_pred cCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccC---CCeEEEEEECCcccccCCCCH
Confidence 567899999 999 999999999999999999999999999999999999999986 679999999872 34
Q ss_pred HHHHHhhh------cCCcccccCCch----------HHHHHHHHc-------------------------cccccceEEE
Q 016404 251 KEFDLNHS------IMPWLAIPYEDR----------ARQDLCRIF-------------------------NIKGIPALVL 289 (390)
Q Consensus 251 ~~~~~~~~------~~~~~~~~~~~~----------~~~~l~~~~-------------------------~v~~~P~~~l 289 (390)
++..++++ .++ +.+|+..+ ....+...+ +|...|+++|
T Consensus 100 ~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tfl 178 (208)
T 2f8a_A 100 EEILNSLKYVRPGGGFE-PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFL 178 (208)
T ss_dssp HHHHHHHHHTSSCTTCC-CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEE
T ss_pred HHHHHHHHhcccccccc-cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEE
Confidence 66777765 333 34444311 111222222 2566799999
Q ss_pred ECCCCcEEee
Q 016404 290 IGPDGKTIST 299 (390)
Q Consensus 290 id~~G~v~~~ 299 (390)
||++|+|+.+
T Consensus 179 ID~~G~i~~~ 188 (208)
T 2f8a_A 179 VGPDGVPLRR 188 (208)
T ss_dssp ECTTSCEEEE
T ss_pred EcCCCcEEEE
Confidence 9999999988
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-20 Score=153.93 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=98.4
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|..+|+|++ +.+|+.+++++++||++||+||+ +||++|..++|.|++++++| .+++|++|+.|. .+..+++
T Consensus 18 ~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-----~~v~vv~is~d~-~~~~~~~ 91 (163)
T 1psq_A 18 VGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-----DNTVVLTVSMDL-PFAQKRW 91 (163)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEESSC-HHHHHHH
T ss_pred CCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-----CCcEEEEEECCC-HHHHHHH
Confidence 5889999999 99999999999999999999995 99999999999999998887 469999999985 4556666
Q ss_pred hhcCCcccccCCch-HHHHHHHHcccc----c--cceEEEECCCCcEEeeC
Q 016404 257 HSIMPWLAIPYEDR-ARQDLCRIFNIK----G--IPALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~l~~~~~v~----~--~P~~~lid~~G~v~~~~ 300 (390)
.+.+++..+|+..| ....+++.||+. + .|+++|||++|+|+++.
T Consensus 92 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~ 142 (163)
T 1psq_A 92 CGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE 142 (163)
T ss_dssp HHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred HHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEE
Confidence 66554325676666 678999999987 3 39999999999999883
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-20 Score=155.99 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=91.0
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|++ .+++|++|++|. +.
T Consensus 7 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~~ 83 (169)
T 2v1m_A 7 SWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVG---KGLRILAFPCNQFGGQEPWAE 83 (169)
T ss_dssp CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSCH
T ss_pred CCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhc---CCeEEEEEECCccCCCCCCCH
Confidence 4788999999 999999999999999999999999999999999999999999986 679999999873 34
Q ss_pred HHHHHhh-hcCCcccccCCc--hHHHH----HH-----HHcc-----ccccceEEEECCCCcEEee
Q 016404 251 KEFDLNH-SIMPWLAIPYED--RARQD----LC-----RIFN-----IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~-~~~~~~~~~~~~--~~~~~----l~-----~~~~-----v~~~P~~~lid~~G~v~~~ 299 (390)
+.+.+++ ..++ +.+|... |.... +. ..++ +..+|+++|||++|+|+.+
T Consensus 84 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 148 (169)
T 2v1m_A 84 AEIKKFVTEKYG-VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKR 148 (169)
T ss_dssp HHHHHHHHHHHC-CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHHhcC-CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEE
Confidence 5666663 4333 2233321 11111 11 1125 5567999999999999988
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=156.95 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=100.3
Q ss_pred hhccCCceEE-eCCCCeeeecccCCc--EEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGK--TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk--~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
+|..+|+|++ +.+|+++++++++|| ++||+|| ++||++|..++|.|++++++|++ .+ +||+|+.| +.+...
T Consensus 9 ~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~-~vv~is~d-~~~~~~ 83 (159)
T 2a4v_A 9 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE---YA-AVFGLSAD-SVTSQK 83 (159)
T ss_dssp TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT---TC-EEEEEESC-CHHHHH
T ss_pred CCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHh---CC-cEEEEeCC-CHHHHH
Confidence 5889999999 999999999999987 8999987 99999999999999999999986 56 99999998 456667
Q ss_pred HhhhcCCcccccCCchHHHHHHHHccccccc------eEEEECCCCcEEeeC
Q 016404 255 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIP------ALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P------~~~lid~~G~v~~~~ 300 (390)
++.+.++ +.+|+..|.+..+++.||+...| +++|| ++|+|+++.
T Consensus 84 ~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~ 133 (159)
T 2a4v_A 84 KFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKR 133 (159)
T ss_dssp HHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEE
T ss_pred HHHHHhC-CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEE
Confidence 7776655 35777777778999999999888 89999 999999883
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-20 Score=156.77 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=98.0
Q ss_pred HhhccCCceEE-eC--CCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHH
Q 016404 178 LLAIEGRDYVL-SR--DHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 253 (390)
Q Consensus 178 l~g~~~p~f~l-~~--~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~ 253 (390)
.+|.++|+|++ +. +|+.++++++ +||++||+||++||++|+.+.|.|++++++ ++.|++|++|.+.+.+
T Consensus 23 ~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------~v~vv~v~~~~~~~~~ 95 (168)
T 2b1k_A 23 LIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-------GIRVVGMNYKDDRQKA 95 (168)
T ss_dssp TTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------TCCEEEEEESCCHHHH
T ss_pred ccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-------CCEEEEEECCCChHHH
Confidence 46999999999 88 8999999985 899999999999999999999999888654 4789999999888888
Q ss_pred HHhhhcCCccccc-CCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 254 DLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 254 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.++...+++ .++ ...+....+++.|+|.++|++++||++|+++.+
T Consensus 96 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 141 (168)
T 2b1k_A 96 ISWLKELGN-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYR 141 (168)
T ss_dssp HHHHHHHCC-CCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEE
T ss_pred HHHHHHcCC-CCceeeECcchHHHHHcCccccCEEEEECCCCeEEEE
Confidence 888876553 233 234556789999999999999999999999987
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-22 Score=164.50 Aligned_cols=117 Identities=22% Similarity=0.353 Sum_probs=104.3
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHH-HHHHhh-cccCCceEEEEEecCCCHHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIE-VYNELK-TTANHCFEVVLVSTDRDHKEFDL 255 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~-l~~~~~-~~~~~~~~vv~v~~d~~~~~~~~ 255 (390)
+|..+|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|.+ ++++++ . .++.|+.|++|.+.+.+.+
T Consensus 9 ~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~---~~~~vv~v~~d~~~~~~~~ 85 (159)
T 2ls5_A 9 IGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDN---ADFALIGIDRDEPLEKVLA 85 (159)
Confidence 5888999999 99999999999999999999999999999999999998 998887 4 7899999999977667777
Q ss_pred hhhcCCcccccCCchHHHHHHHHcc--ccccceEEEECCCCcEEee
Q 016404 256 NHSIMPWLAIPYEDRARQDLCRIFN--IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~P~~~lid~~G~v~~~ 299 (390)
+.+.+++ .+|...|....+.+.|+ +.++|+++|||++|+|+.+
T Consensus 86 ~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~ 130 (159)
T 2ls5_A 86 FAKSTGV-TYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKL 130 (159)
Confidence 7776663 67887788889999999 5679999999999999987
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=174.38 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=105.5
Q ss_pred HhhccCCceE-----E-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC----
Q 016404 178 LLAIEGRDYV-----L-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD---- 247 (390)
Q Consensus 178 l~g~~~p~f~-----l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d---- 247 (390)
.+|.++|+|+ + +.+|+.+++++++||+|||+||++||++|+.++|.|.+++++|++ .++.||+|++|
T Consensus 52 ~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~---~~v~vi~Vs~d~~~~ 128 (352)
T 2hyx_A 52 ESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD---SGLAVIGVHTPEYAF 128 (352)
T ss_dssp CCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEECCSSGG
T ss_pred CCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhc---CCeEEEEEECCcccc
Confidence 3588999999 8 899999999999999999999999999999999999999999986 68999999986
Q ss_pred -CCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 248 -RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 248 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+.+.++++++.++ +.+|+..|....+++.|+|.++|+++|||++|+|+.+
T Consensus 129 ~d~~~~~~~~~~~~~-l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~ 180 (352)
T 2hyx_A 129 EKVPGNVAKGAANLG-ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHI 180 (352)
T ss_dssp GGCHHHHHHHHHHHT-CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred cCCHHHHHHHHHHcC-CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEE
Confidence 35678888887665 3567767777889999999999999999999999988
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-20 Score=150.46 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=91.7
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC--C-
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP--W- 101 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~--~- 101 (390)
+.| +.+|+ +++++++||+++|+||++||++|+.++|.|.++++++++.+ +++++|++|.+.+.+++++++++ |
T Consensus 16 f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~ 92 (143)
T 4fo5_A 16 IEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEKESIFTETVKIDKLDLS 92 (143)
T ss_dssp CCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTT--EEEEEEECCSCHHHHHHHHHHHTCCGG
T ss_pred eEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCC--EEEEEEEccCCHHHHHHHHHHhCCCCc
Confidence 446 88999 99999999999999999999999999999999999998766 99999999999889999999655 4
Q ss_pred cceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
..+....+....+++.|++.++|+++++|++|+++.+..
T Consensus 93 ~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 131 (143)
T 4fo5_A 93 TQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAANV 131 (143)
T ss_dssp GEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEESC
T ss_pred eeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEccC
Confidence 222223334568999999999999999999999987653
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-20 Score=153.83 Aligned_cols=116 Identities=10% Similarity=0.056 Sum_probs=100.1
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|..+|+|++ +.+|+.+++++++||++||+|| ++||++|..++|.|++++++| .+++||+|+.|. .+..+++
T Consensus 19 ~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-----~~v~vv~Is~d~-~~~~~~~ 92 (165)
T 1q98_A 19 VGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-----SNTIVLCISADL-PFAQARF 92 (165)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-----TTEEEEEEESSC-HHHHTTC
T ss_pred CCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-----CCCEEEEEeCCC-HHHHHHH
Confidence 5889999999 9999999999999999999999 899999999999999999988 468999999984 5566667
Q ss_pred hhcCCcccccCCchH-HHHHHHHccccc---------cceEEEECCCCcEEeeC
Q 016404 257 HSIMPWLAIPYEDRA-RQDLCRIFNIKG---------IPALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~-~~~l~~~~~v~~---------~P~~~lid~~G~v~~~~ 300 (390)
.+.+++..+|+..|. ...+++.||+.. .|+++|||++|+|+++.
T Consensus 93 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~ 146 (165)
T 1q98_A 93 CGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ 146 (165)
T ss_dssp TTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred HHHcCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEE
Confidence 766654257776665 688999999864 59999999999999884
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-19 Score=150.14 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=108.6
Q ss_pred hhccCC-ceEE-eCCCCeeeecccCCcEEEEEEccCCCc-ccHhhHHHHHHHHHHhhcccCCceEEEEEecCC--CHHHH
Q 016404 179 LAIEGR-DYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEF 253 (390)
Q Consensus 179 ~g~~~p-~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~ 253 (390)
+|.++| +|++ +.+|+++++++++||++||+||++||+ +|..+++.|++++++|++ .+.+++||+|++|. +.+.+
T Consensus 3 ~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~-~~~~~~vv~is~d~~d~~~~~ 81 (170)
T 3me7_A 3 LGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGT-PGKDFWVITFTFDPKDTLEDI 81 (170)
T ss_dssp TTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCC-BTTTBEEEEEECCTTCCHHHH
T ss_pred CCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhh-cCCceEEEEEECCCCCCHHHH
Confidence 588999 9999 999999999999999999999999998 599999999999999974 34679999999984 45677
Q ss_pred HHhhhcCCcc--cc----cCCchHHHHHHHHccc---------cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChh
Q 016404 254 DLNHSIMPWL--AI----PYEDRARQDLCRIFNI---------KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTES 318 (390)
Q Consensus 254 ~~~~~~~~~~--~~----~~~~~~~~~l~~~~~v---------~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~ 318 (390)
+++.+.++.. .+ ....+....+++.||+ ...|+++|||++|+|+.. +.|...
T Consensus 82 ~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~-------~~g~~~------ 148 (170)
T 3me7_A 82 KRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY-------IYGVNY------ 148 (170)
T ss_dssp HHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE-------EESSSC------
T ss_pred HHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE-------EeCCCC------
Confidence 7777755521 11 1123456788888774 456899999999999977 344321
Q ss_pred hHHHHHHHHHHhcC
Q 016404 319 RIAEIETALKKEGD 332 (390)
Q Consensus 319 ~~~~l~~~~~~~~~ 332 (390)
..+++.+.+++.+.
T Consensus 149 ~~~~i~~~l~~~~~ 162 (170)
T 3me7_A 149 NYLEFVNALRLARG 162 (170)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhc
Confidence 15666666666554
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-20 Score=154.34 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=102.3
Q ss_pred hhccCCceEE---eCCC--Ceeeecc-cCCcEEEEEEc-cCCCcccH-hhHHHHHHHHHHhhcccCCceE-EEEEecCCC
Q 016404 179 LAIEGRDYVL---SRDH--RKITVSE-LAGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCFE-VVLVSTDRD 249 (390)
Q Consensus 179 ~g~~~p~f~l---~~~g--~~~~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~~-vv~v~~d~~ 249 (390)
+|..+|+|++ +.+| +++++++ ++||++||+|| ++||++|. .++|.|++++++|++ .+++ |++|+.| +
T Consensus 6 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~---~~v~~vv~Is~d-~ 81 (162)
T 1tp9_A 6 VGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS---KGVTEILCISVN-D 81 (162)
T ss_dssp TTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH---TTCCCEEEEESS-C
T ss_pred CCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECC-C
Confidence 5889999987 6889 9999999 89999999999 89999999 999999999999986 7899 9999998 4
Q ss_pred HHHHHHhhhcCCcc-cccCCchHHHHHHHHcccc-----------ccceEEEECCCCcEEeeC
Q 016404 250 HKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 250 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~ 300 (390)
.+..+++.+.++.. .+|+..|.+..+++.||+. ..|+++||| +|+|++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~ 143 (162)
T 1tp9_A 82 PFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN 143 (162)
T ss_dssp HHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEE
Confidence 56677777766643 5788888889999999986 379999999 99999883
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-20 Score=157.00 Aligned_cols=117 Identities=11% Similarity=0.040 Sum_probs=92.5
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
+|.++|+|++ +.+|+++++++++||++||+||++||++|+.++|.|++++++|++ .+++|++|++|. +.
T Consensus 25 ~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~---~~v~vv~is~d~~~~~~~~~~ 101 (185)
T 2gs3_A 25 CARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE---CGLRILAFPCNQFGKQEPGSN 101 (185)
T ss_dssp GCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCTTTTCCCSCH
T ss_pred CCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhc---CCeEEEEEECcccCCCCCCCH
Confidence 5888999999 999999999999999999999999999999999999999999986 679999999873 35
Q ss_pred HHHHHhhhcCCcccccCCc--hHHH----HHHHHc-------c-----ccccceEEEECCCCcEEee
Q 016404 251 KEFDLNHSIMPWLAIPYED--RARQ----DLCRIF-------N-----IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~--~~~~----~l~~~~-------~-----v~~~P~~~lid~~G~v~~~ 299 (390)
+++.++.+.++. .+|... |.+. .+.+.+ + +..+|+++|||++|+|+.+
T Consensus 102 ~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~ 167 (185)
T 2gs3_A 102 EEIKEFAAGYNV-KFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR 167 (185)
T ss_dssp HHHHHHHHHTTC-CSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEE
T ss_pred HHHHHHHHHcCC-CCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEe
Confidence 667777765552 344332 1111 122211 4 3346999999999999988
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=157.73 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=101.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|..+|+|++ +.+|+.+++++++||+|||+|| ++||++|..++|.|++++++| .+++||+|+.| +.+..+++
T Consensus 54 ~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-----~~v~vv~Is~D-~~~~~~~~ 127 (200)
T 3zrd_A 54 IGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-----ENTVVLCISSD-LPFAQSRF 127 (200)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-----TTEEEEEEESS-CHHHHTTC
T ss_pred CCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-----CCCEEEEEECC-CHHHHHHH
Confidence 5899999999 9999999999999999999999 789999999999999999988 36999999998 45666777
Q ss_pred hhcCCcccccCCchH-HHHHHHHcccc---------ccceEEEECCCCcEEeeC
Q 016404 257 HSIMPWLAIPYEDRA-RQDLCRIFNIK---------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~-~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~ 300 (390)
.+.+++..+|+..|. ...+++.||+. ..|++||||++|+|+++.
T Consensus 128 ~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~ 181 (200)
T 3zrd_A 128 CGAEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSE 181 (200)
T ss_dssp TTTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred HHHcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEE
Confidence 776664377777777 78999999986 369999999999999883
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=157.76 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=102.1
Q ss_pred HhhccCCceEE-e---CCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHH
Q 016404 178 LLAIEGRDYVL-S---RDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 178 l~g~~~p~f~l-~---~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
.+|.++|+|++ + .+|+.+++++++||++||+|| ++||++|+.++|.|.+++++|++ .+++||+|++|. ...
T Consensus 28 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~---~~v~vv~Is~D~-~~~ 103 (220)
T 1zye_A 28 AVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD---VNCEVVAVSVDS-HFS 103 (220)
T ss_dssp CTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH---TTEEEEEEESSC-HHH
T ss_pred cCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCC-HHH
Confidence 36899999998 3 468999999999999999999 99999999999999999999986 789999999995 444
Q ss_pred HHHhhhcC----C--cccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIM----P--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~----~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
..++.+.+ + .+.+|+..|....+++.|++. .+|+++|||++|+|+++.
T Consensus 104 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~ 163 (220)
T 1zye_A 104 HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS 163 (220)
T ss_dssp HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEE
Confidence 55555443 1 356777777778999999999 999999999999999883
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-20 Score=149.04 Aligned_cols=111 Identities=17% Similarity=0.262 Sum_probs=96.6
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHH---HHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ---LYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~---~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.+.|.+.+|+ +++++++||+++|+||++||++|+.++|.|.+ +++++++.+ +++++|++|.+.+.+++|+++++
T Consensus 9 ~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~ 86 (142)
T 3ewl_A 9 DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDENREEWATKAVYMP 86 (142)
T ss_dssp CCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTS--EEEEEEECSSCHHHHHHHHTTSC
T ss_pred CCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCC--eEEEEEEecCCHHHHHHHHHHcC
Confidence 4568999999 99999999999999999999999999999998 999998876 99999999999999999999887
Q ss_pred CcceecChhHHHHHHH--hcCcCCCCeEEEEcCCCccccc
Q 016404 101 WLAVPFDETLHKKLRI--RYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~--~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+ .+|...+....+.. .|++.++|+++++|++|+++.+
T Consensus 87 ~-~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 87 Q-GWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp T-TCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred C-CcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec
Confidence 3 45553444445554 9999999999999999999863
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-20 Score=154.55 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=99.4
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|.++|+|++ +.+|+.+++++++||+++|+|| ++||++|..++|.|++++++ .+++|++|+.|. .+..+++
T Consensus 22 ~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~------~~~~vv~is~d~-~~~~~~~ 94 (166)
T 3p7x_A 22 EGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK------EEGIVLTISADL-PFAQKRW 94 (166)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT------TTSEEEEEESSC-HHHHHHH
T ss_pred CCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc------CCCEEEEEECCC-HHHHHHH
Confidence 5899999999 9999999999999999999999 78999999999999988665 468999999984 5667777
Q ss_pred hhcCCcccccCCchH-HHHHHHHccccc------cceEEEECCCCcEEee
Q 016404 257 HSIMPWLAIPYEDRA-RQDLCRIFNIKG------IPALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~-~~~l~~~~~v~~------~P~~~lid~~G~v~~~ 299 (390)
.+.++...+|+..|. ...+++.||+.. +|+++|||++|+|+++
T Consensus 95 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~ 144 (166)
T 3p7x_A 95 CASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYK 144 (166)
T ss_dssp HHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEE
T ss_pred HHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEE
Confidence 776664367777777 779999999985 8999999999999987
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=157.85 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=84.9
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-------CCHH
Q 016404 180 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHK 251 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~ 251 (390)
+..+|+|++ +.+|+++++++++||++||+|||+||++|+ ++|.|++++++|++ .++.|++|++| .+.+
T Consensus 9 ~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~~~d~~~ 84 (171)
T 3cmi_A 9 MSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKD---EGFTIIGFPCNQFGHQEPGSDE 84 (171)
T ss_dssp -CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGG---GTEEEEEEEECSCC--------
T ss_pred hhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhcc---CCeEEEEEECcccCCCCCCCHH
Confidence 456899999 999999999999999999999999999999 99999999999986 67999999986 2345
Q ss_pred HHHHhh-hcCCcccccCCchH--H--------HH-HHHHccccccc------eEEEECCCCcEEee
Q 016404 252 EFDLNH-SIMPWLAIPYEDRA--R--------QD-LCRIFNIKGIP------ALVLIGPDGKTIST 299 (390)
Q Consensus 252 ~~~~~~-~~~~~~~~~~~~~~--~--------~~-l~~~~~v~~~P------~~~lid~~G~v~~~ 299 (390)
.+.++. +.++ +.+|...+. . .. ..+.|++.++| +++|||++|+|+.+
T Consensus 85 ~~~~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 149 (171)
T 3cmi_A 85 EIAQFCQLNYG-VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER 149 (171)
T ss_dssp ----------C-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred HHHHHHHhccC-CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence 666666 5443 334443221 1 11 12468999999 99999999999988
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=161.38 Aligned_cols=111 Identities=12% Similarity=0.148 Sum_probs=94.1
Q ss_pred ceeecC-CC---ccccCc-cCCCEEEEEEe-cCCChhhh-hhHHHHHHHHHHHhhCCCcE-EEEEEecCCChhHHHHHHH
Q 016404 26 EFLLSR-QG---KVPLSS-CGGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEEHFK 97 (390)
Q Consensus 26 ~~l~~~-~g---~~~l~~-~~gk~vll~F~-a~~C~~C~-~~~p~l~~~~~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~ 97 (390)
+.|.+. +| .++|++ ++||+++|+|| ++||++|+ .++|.|.++++++++.+ + +|++|+.|. ....++|.+
T Consensus 12 f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~--~~~vv~is~d~-~~~~~~~~~ 88 (241)
T 1nm3_A 12 VTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG--VDDILVVSVND-TFVMNAWKE 88 (241)
T ss_dssp CEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESSC-HHHHHHHHH
T ss_pred eEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEcCC-HHHHHHHHH
Confidence 447775 66 489999 89999999999 99999999 99999999999999877 8 899999984 667889999
Q ss_pred hCCCcceecChhHHHHHHHhcCcC-----------CCCeEEEEcCCCccccccc
Q 016404 98 CMPWLAVPFDETLHKKLRIRYRVD-----------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~~~d~~G~i~~~~~ 140 (390)
+++...+|+..|....+++.||+. ..|+.+++ ++|++++...
T Consensus 89 ~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~ 141 (241)
T 1nm3_A 89 DEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFI 141 (241)
T ss_dssp HTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEE
T ss_pred hcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEE
Confidence 888555788666678899999986 35899999 8999986553
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-20 Score=158.96 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=94.2
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CHH
Q 016404 180 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHK 251 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~ 251 (390)
+.++|+|++ +.+|+.+++++++||+|||+||++||++|+.++|.|++++++|++ .+++||+|++|. +.+
T Consensus 25 ~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~~~~~~~ 101 (190)
T 2vup_A 25 ASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS---QGFTVLAFPCNQFGGQEPGNEE 101 (190)
T ss_dssp CCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTCEEEEEECCCSTTCCCSCHH
T ss_pred CCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhc---CCeEEEEEEcCccCCCCCCCHH
Confidence 678899999 999999999999999999999999999999999999999999986 679999999983 566
Q ss_pred HHHHhh-hcCCcccccCCc--hHHHH----H-----HHHccccccc------eEEEECCCCcEEee
Q 016404 252 EFDLNH-SIMPWLAIPYED--RARQD----L-----CRIFNIKGIP------ALVLIGPDGKTIST 299 (390)
Q Consensus 252 ~~~~~~-~~~~~~~~~~~~--~~~~~----l-----~~~~~v~~~P------~~~lid~~G~v~~~ 299 (390)
.+.+++ ..++ +.+|... |.... + .+.|++.++| +++|||++|+|+.+
T Consensus 102 ~~~~~~~~~~~-~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 102 EIKEFVCTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp HHHHHHHHHHC-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHhcC-CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence 777777 4433 2344332 11111 1 2347899999 99999999999987
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-20 Score=156.66 Aligned_cols=118 Identities=12% Similarity=0.071 Sum_probs=94.5
Q ss_pred HhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------C
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------D 249 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~ 249 (390)
.+|.++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|++ .+++|++|++|. +
T Consensus 22 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~e~~~ 98 (183)
T 2obi_A 22 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAE---CGLRILAFPCNQFGKQEPGS 98 (183)
T ss_dssp GGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSC
T ss_pred cccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhc---CCeEEEEEECCCCCCCCCCC
Confidence 35889999999 999999999999999999999999999999999999999999986 679999999873 5
Q ss_pred HHHHHHhhhcCCcccccCCc--hHHH----HHHHHc-------c-----ccccceEEEECCCCcEEee
Q 016404 250 HKEFDLNHSIMPWLAIPYED--RARQ----DLCRIF-------N-----IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~--~~~~----~l~~~~-------~-----v~~~P~~~lid~~G~v~~~ 299 (390)
.+++.++.+.++. .+|... |.+. .+.+.+ + +..+|+++|||++|+|+.+
T Consensus 99 ~~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~ 165 (183)
T 2obi_A 99 NEEIKEFAAGYNV-KFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR 165 (183)
T ss_dssp HHHHHHHHHTTTC-CSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEE
T ss_pred HHHHHHHHHHcCC-CceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEE
Confidence 6777777776552 344432 2111 122211 4 4457999999999999988
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-20 Score=157.83 Aligned_cols=117 Identities=13% Similarity=0.286 Sum_probs=103.0
Q ss_pred hhccCCceEE--eCCCCeeeecccCCc-EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------
Q 016404 179 LAIEGRDYVL--SRDHRKITVSELAGK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR------- 248 (390)
Q Consensus 179 ~g~~~p~f~l--~~~g~~~~l~~~~gk-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~------- 248 (390)
+|..+|+|++ +.+|+.+++++++|| ++||+||++||++|+.++|.|++++++|++ .++.|++|++|.
T Consensus 20 ~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~v~~d~~~~~~~d 96 (196)
T 2ywi_A 20 LGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMP---KGVSFVAINSNDAEQYPED 96 (196)
T ss_dssp TTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGG---GTCEEEEEECSCTTTCGGG
T ss_pred cCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHh---CCcEEEEEECCcccccccc
Confidence 5888999998 589999999999998 599999999999999999999999999986 579999999973
Q ss_pred CHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 249 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.+.+.+++..++ +.+|+..|.+..+++.|++.++|+++|||++|+|+++
T Consensus 97 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 146 (196)
T 2ywi_A 97 SPENMKKVAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYR 146 (196)
T ss_dssp SHHHHHHHHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEE
T ss_pred CHHHHHHHHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEc
Confidence 5677777777655 3566666667889999999999999999999999987
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=149.07 Aligned_cols=113 Identities=21% Similarity=0.310 Sum_probs=97.6
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
.++|.+.+|+ +++++++||+++|+||++||++|+.++|.|.++++++++.+ +++++|++|.+.+.++++..+++|..
T Consensus 17 ~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~i~~d~~~~~~~~~~~~~~~~~ 94 (152)
T 2lrt_A 17 DIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWKTSADNLPWVC 94 (152)
T ss_dssp CCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECSCCHHHHHHHHTTCSSEE
T ss_pred CeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHHHhCCCceE
Confidence 4568999999 99999999999999999999999999999999999999876 99999999999888888888766544
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+.........+++.|++.++|+++++|++|+++.+.
T Consensus 95 ~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 130 (152)
T 2lrt_A 95 VRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARG 130 (152)
T ss_dssp EECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEET
T ss_pred EECCCCcchHHHHHcCcccCceEEEECCCCeEEEec
Confidence 433233333589999999999999999999998654
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=153.58 Aligned_cols=135 Identities=18% Similarity=0.128 Sum_probs=105.7
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|.++|+|++ +.+|+.+++++++||++||+||++| |++|+.++|.|++++++ .+++||+|++|. .+..+++
T Consensus 20 ~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~------~~v~vv~Is~D~-~~~~~~~ 92 (175)
T 1xvq_A 20 VGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA------SGATVLCVSKDL-PFAQKRF 92 (175)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH------TTCEEEEEESSC-HHHHTTC
T ss_pred cCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh------cCCEEEEEECCC-HHHHHHH
Confidence 5889999999 9999999999999999999999999 99999999999999887 358999999985 4455666
Q ss_pred hhcCCcccccCCchHHHHHHHHcccccc---------ceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHH
Q 016404 257 HSIMPWLAIPYEDRARQDLCRIFNIKGI---------PALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETAL 327 (390)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~ 327 (390)
.+.+++..+|+..|....+++.|++... |+++|||++|+|+++. .|.. ...+..++++.+++
T Consensus 93 ~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~-------~g~~--~~~~~~~~~~l~~l 163 (175)
T 1xvq_A 93 CGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE-------LVPE--IAQEPNYEAALAAL 163 (175)
T ss_dssp C------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE-------ECSB--TTCCCCHHHHHHHH
T ss_pred HHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEE-------ECCC--cCCCCCHHHHHHHH
Confidence 6666644677777767889999999887 9999999999999883 2211 11233466666666
Q ss_pred HH
Q 016404 328 KK 329 (390)
Q Consensus 328 ~~ 329 (390)
++
T Consensus 164 ~~ 165 (175)
T 1xvq_A 164 GA 165 (175)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=151.64 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=101.3
Q ss_pred hhccCCceEE--eCCCCeeeeccc-CCcEEEEEEc-cCCCcccHh-hHHHHHHHHHHhhcccCCce-EEEEEecCCCHHH
Q 016404 179 LAIEGRDYVL--SRDHRKITVSEL-AGKTIGLYFG-AHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVLVSTDRDHKE 252 (390)
Q Consensus 179 ~g~~~p~f~l--~~~g~~~~l~~~-~gk~vlv~F~-a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~-~vv~v~~d~~~~~ 252 (390)
+|.++|+|++ +.+|++++++++ +||++||+|| ++||++|+. ++|.|++++++|++ .++ +||+|+.| +...
T Consensus 5 ~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~---~gv~~vv~Is~d-~~~~ 80 (167)
T 2wfc_A 5 EGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHG---KGVDIIACMAVN-DSFV 80 (167)
T ss_dssp TTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHH---TTCCEEEEEESS-CHHH
T ss_pred CCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEeCC-CHHH
Confidence 5889999998 688999999999 9998888885 999999999 99999999999986 789 99999998 4556
Q ss_pred HHHhhhcCCcc-cccCCchHHHHHHHHcccccc-----------ceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIMPWL-AIPYEDRARQDLCRIFNIKGI-----------PALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~~~-----------P~~~lid~~G~v~~~~ 300 (390)
.+++.+..+.. .+|+..|.+..+++.||+... |+++|| ++|+|++..
T Consensus 81 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~ 139 (167)
T 2wfc_A 81 MDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVN 139 (167)
T ss_dssp HHHHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEE
T ss_pred HHHHHHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEE
Confidence 67777766642 378888888899999998754 999999 999999883
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=158.59 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=100.9
Q ss_pred HhhccCCceEE-eC---CCCeeeecccCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHH
Q 016404 178 LLAIEGRDYVL-SR---DHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 178 l~g~~~p~f~l-~~---~g~~~~l~~~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
.+|.++|+|++ +. +|+++++++++||++||+||+ +||++|..++|.|.+++++|++ .+++||+|++|.. ..
T Consensus 49 ~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~---~gv~vv~Is~D~~-~~ 124 (240)
T 3qpm_A 49 KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA---INTEVVACSVDSQ-FT 124 (240)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHT---TTEEEEEEESSCH-HH
T ss_pred CCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEECCCH-HH
Confidence 46999999997 33 466999999999999999999 9999999999999999999986 7899999999863 34
Q ss_pred HHHhhhcC------CcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
..++.... ..+.+|+..|....+++.||+. .+|++||||++|+|+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~ 184 (240)
T 3qpm_A 125 HLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQIT 184 (240)
T ss_dssp HHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEE
Confidence 44444432 2467788778788999999997 789999999999999883
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-20 Score=156.33 Aligned_cols=136 Identities=12% Similarity=0.135 Sum_probs=107.4
Q ss_pred HhhccCCceEE-eC--CC-Ceeeecc-cCCcE-EEEEEccCCCcccHh-hHHHHHHHHHHhhcccCCceE-EEEEecCCC
Q 016404 178 LLAIEGRDYVL-SR--DH-RKITVSE-LAGKT-IGLYFGAHWCPPCRS-FTSQLIEVYNELKTTANHCFE-VVLVSTDRD 249 (390)
Q Consensus 178 l~g~~~p~f~l-~~--~g-~~~~l~~-~~gk~-vlv~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~~-vv~v~~d~~ 249 (390)
.+|.++|+|++ +. +| +++++++ ++||+ ||++||++|||+|+. ++|.|++++++|++ .+++ |++|+.|.
T Consensus 27 ~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~---~gv~~vv~Is~d~- 102 (184)
T 3uma_A 27 AVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILA---RGVDDIAVVAVND- 102 (184)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHT---TTCCEEEEEESSC-
T ss_pred CCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHH---cCCCEEEEEECCC-
Confidence 36999999999 77 89 9999999 89985 556677999999999 79999999999986 7888 99999984
Q ss_pred HHHHHHhhhcCCcc-cccCCchHHHHHHHHcccc-----------ccceEEEECCCCcEEeeCcchhhhhcCccCCCCCh
Q 016404 250 HKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTE 317 (390)
Q Consensus 250 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~ 317 (390)
....+++.+..+.. .+|+..|.+..+++.||+. ..|+++||| +|+|++.. .+..+-+...
T Consensus 103 ~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~-------~~~~~g~~~~ 174 (184)
T 3uma_A 103 LHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALN-------IEESPGQATA 174 (184)
T ss_dssp HHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEE-------ECSSTTCCST
T ss_pred HHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEE-------EeCCCCCCcC
Confidence 55566666665543 4888888889999999985 358899996 99999983 4433333444
Q ss_pred hhHHHHHH
Q 016404 318 SRIAEIET 325 (390)
Q Consensus 318 ~~~~~l~~ 325 (390)
...+++.+
T Consensus 175 ~~~~~vL~ 182 (184)
T 3uma_A 175 SGAAAMLE 182 (184)
T ss_dssp TSHHHHHH
T ss_pred CCHHHHHh
Confidence 45555544
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=147.94 Aligned_cols=112 Identities=19% Similarity=0.287 Sum_probs=97.9
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
.+.+.+.+|+ +++++++||+++|+||++||++|+.+.|.|.++++++++.+ +++++|++|.+.+.+++++++.+ +.
T Consensus 11 ~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~-~~ 87 (152)
T 2lrn_A 11 AITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWKKAIEEDK-SY 87 (152)
T ss_dssp CCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTT--EEEEEEECCSCHHHHHHHHHHHT-CC
T ss_pred CceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHHHHHhC-CC
Confidence 4568999999 99999999999999999999999999999999999998766 99999999988889999998665 23
Q ss_pred eecChh---HHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 104 VPFDET---LHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~~~~---~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+|...+ ....+++.|++.++|+++++|++|+++.+.
T Consensus 88 ~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 126 (152)
T 2lrn_A 88 WNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE 126 (152)
T ss_dssp SEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC
T ss_pred CeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEee
Confidence 444333 268899999999999999999999998764
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-19 Score=183.54 Aligned_cols=196 Identities=15% Similarity=0.224 Sum_probs=132.8
Q ss_pred chhhhhhccCcceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHH
Q 016404 15 DFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93 (390)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~ 93 (390)
++..++.....+.+...++. +.. +.|++++|.||++||++|+.++|.|.+++++++++ +.++.|+++ ..
T Consensus 429 ~i~~f~~~~~~~~v~~l~~~~~~~--~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~---v~~~~vd~~--~~--- 498 (780)
T 3apo_A 429 DILAFAKESVNSHVTTLGPQNFPA--SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTLDCT--IH--- 498 (780)
T ss_dssp HHHHHHHHHHTSCEEECCTTTSCT--TCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETT--TC---
T ss_pred HHHHHhhhccCCCCEecCHHHHHH--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEeCC--CC---
Confidence 35666665555667777766 443 38999999999999999999999999999999754 666666655 32
Q ss_pred HHHHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhccc
Q 016404 94 EHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGG 173 (390)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (390)
..+++.|++.++|++++++ +|++.... |.. ........+.....
T Consensus 499 ------------------~~~~~~~~v~~~Pt~~~~~-~g~~~~~~--------g~~---~~~~l~~fi~~~~~------ 542 (780)
T 3apo_A 499 ------------------EGLCNMYNIQAYPTTVVFN-QSSIHEYE--------GHH---SAEQILEFIEDLRN------ 542 (780)
T ss_dssp ------------------HHHHHHTTCCSSSEEEEEE-TTEEEEEC--------SCS---CHHHHHHHHHHHHS------
T ss_pred ------------------HHHHHHcCCCcCCeEEEEc-CCceeeec--------Ccc---cHHHHHHHHHhhcc------
Confidence 5789999999999999995 56542100 110 11111111211110
Q ss_pred chhHHhhccCCceEEeCCCCeee---ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH
Q 016404 174 KLEQLLAIEGRDYVLSRDHRKIT---VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250 (390)
Q Consensus 174 ~~~~l~g~~~p~f~l~~~g~~~~---l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~ 250 (390)
|... .++++.+. ...-++++++|.|+++||++|+.+.|.+.++++.++ .++.++.+..+.
T Consensus 543 ----------~~v~-~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~----~~v~~~~vd~~~-- 605 (780)
T 3apo_A 543 ----------PSVV-SLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT----GLINVGSVDCGQ-- 605 (780)
T ss_dssp ----------CSEE-ECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTSEEEEEETTT--
T ss_pred ----------ccee-ecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh----CCeEEEEEECcc--
Confidence 1111 11121111 011124678999999999999999999999999997 346666665543
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCC
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDG 294 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G 294 (390)
+..+++.|+|.++|+++++.+++
T Consensus 606 ---------------------~~~l~~~~~v~~~Pti~~~~~~~ 628 (780)
T 3apo_A 606 ---------------------YHSFCTQENVQRYPEIRFYPQKS 628 (780)
T ss_dssp ---------------------THHHHHHTTCCSSSEEEEECCCS
T ss_pred ---------------------hHHHHHHcCCCCCCeEEEEcCCC
Confidence 46788999999999999996543
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=152.30 Aligned_cols=115 Identities=19% Similarity=0.158 Sum_probs=88.8
Q ss_pred hccCCceEE-eCC-CCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 180 AIEGRDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 180 g~~~p~f~l-~~~-g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
...+|+|++ +.+ |+.++|++++||+|||+|||+||++|+ ++|.|++++++|++ .+++||+|++|. +.
T Consensus 32 ~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~---~g~~Vlgvs~d~f~~~e~~~~ 107 (215)
T 2i3y_A 32 KGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKP---YGLVVLGFPCNQFGKQEPGDN 107 (215)
T ss_dssp CCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSCH
T ss_pred cCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhcc---CCeEEEEEEccccCcCCCCCH
Confidence 456899999 999 999999999999999999999999999 99999999999986 789999999762 34
Q ss_pred HHHHHhhh------cCCcccccCCchH----------HHHHHHHc-------c--------------ccccceEEEECCC
Q 016404 251 KEFDLNHS------IMPWLAIPYEDRA----------RQDLCRIF-------N--------------IKGIPALVLIGPD 293 (390)
Q Consensus 251 ~~~~~~~~------~~~~~~~~~~~~~----------~~~l~~~~-------~--------------v~~~P~~~lid~~ 293 (390)
++.+++++ .++ +.+|+..+. ...+.... + |...|+.||||++
T Consensus 108 ~~i~~f~~~~~~~~~~~-~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~ 186 (215)
T 2i3y_A 108 KEILPGLKYVRPGGGFV-PSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPD 186 (215)
T ss_dssp HHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTT
T ss_pred HHHHHHHHhccchhccC-ccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCC
Confidence 66777776 444 455553211 11122211 1 2233899999999
Q ss_pred CcEEee
Q 016404 294 GKTIST 299 (390)
Q Consensus 294 G~v~~~ 299 (390)
|+|+.+
T Consensus 187 G~vv~~ 192 (215)
T 2i3y_A 187 GIPVMR 192 (215)
T ss_dssp SCEEEE
T ss_pred CeEEEE
Confidence 999988
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=151.66 Aligned_cols=115 Identities=14% Similarity=0.140 Sum_probs=98.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|.++|+|++ +.+|+.+++++++||++||+|| ++||++|..++|.|++++++| .+++||+|+.|. .+..+++
T Consensus 23 ~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-----~~v~vv~Is~d~-~~~~~~~ 96 (171)
T 2yzh_A 23 VGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM-----EGVDVTVVSMDL-PFAQKRF 96 (171)
T ss_dssp TTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEESSC-HHHHHHH
T ss_pred CCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-----CCceEEEEeCCC-HHHHHHH
Confidence 5888999999 9999999999999999999999 899999999999999998887 469999999985 5566677
Q ss_pred hhcCCcccccCCch-HHHHHHHHccccc---------cceEEEECCCCcEEeeC
Q 016404 257 HSIMPWLAIPYEDR-ARQDLCRIFNIKG---------IPALVLIGPDGKTISTN 300 (390)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~---------~P~~~lid~~G~v~~~~ 300 (390)
.+.++...+|+..| ....+ +.|++.. +|+++|||++|+|+++.
T Consensus 97 ~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~ 149 (171)
T 2yzh_A 97 CESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQ 149 (171)
T ss_dssp HHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred HHHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEE
Confidence 77665436677666 56778 9999862 69999999999999883
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-20 Score=152.54 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=98.0
Q ss_pred HhhccCCceEE-eCCC--------CeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC
Q 016404 178 LLAIEGRDYVL-SRDH--------RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR 248 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g--------~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~ 248 (390)
.+|..+|+|++ +.+| +.+++++++||++||+||++||++|+.+.|.|++++++ .++.++.|++|.
T Consensus 9 ~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~------~~v~~v~v~~~~ 82 (156)
T 1kng_A 9 LIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD------KRFQLVGINYKD 82 (156)
T ss_dssp ---CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC------TTSEEEEEEESC
T ss_pred HhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc------CCeEEEEEECCC
Confidence 46899999999 8888 99999999999999999999999999999999887653 458999999998
Q ss_pred CHHHHHHhhhcCCccccc-CCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 249 DHKEFDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.+.+.++...+++ .++ +..+....+++.|++.++|++++||++|+++.+
T Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~ 133 (156)
T 1kng_A 83 AADNARRFLGRYGN-PFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYK 133 (156)
T ss_dssp CHHHHHHHHHHHCC-CCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred CHHHHHHHHHHcCC-CCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence 88888888876653 344 444566789999999999999999999999987
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=150.80 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=100.5
Q ss_pred hHHhhccCCceEE--eCCCCeeeecc-cCCcEEEE-EEccCCCcccH-hhHHHHHHHHHHhhcccCCceEEEE-EecCCC
Q 016404 176 EQLLAIEGRDYVL--SRDHRKITVSE-LAGKTIGL-YFGAHWCPPCR-SFTSQLIEVYNELKTTANHCFEVVL-VSTDRD 249 (390)
Q Consensus 176 ~~l~g~~~p~f~l--~~~g~~~~l~~-~~gk~vlv-~F~a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~~vv~-v~~d~~ 249 (390)
...+|.++|+|++ +.+|+.+++++ ++||+|+| +||++||++|. .++|.|++++++|++ .+++||+ |+.|.
T Consensus 14 ~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~---~gv~vv~~iS~D~- 89 (173)
T 3mng_A 14 PIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA---KGVQVVACLSVND- 89 (173)
T ss_dssp CCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHT---TTCCEEEEEESSC-
T ss_pred CCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEEcCCC-
Confidence 3456999999998 58999999999 59986555 55699999999 599999999999986 7899997 99884
Q ss_pred HHHHHHhhhcCCcc-cccCCchHHHHHHHHcccc-------------ccceEEEECCCCcEEeeC
Q 016404 250 HKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-------------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 250 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-------------~~P~~~lid~~G~v~~~~ 300 (390)
....+++.+..+.. .+|+..|.+..+++.||+. ..|+++||| +|+|++..
T Consensus 90 ~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~ 153 (173)
T 3mng_A 90 AFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALN 153 (173)
T ss_dssp HHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEE
Confidence 55666777766643 4888888889999999985 359999999 99999984
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=153.07 Aligned_cols=120 Identities=19% Similarity=0.332 Sum_probs=96.7
Q ss_pred HhhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCC---CHHH
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKE 252 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~ 252 (390)
+.|..+|+|++ +.+| .+++++++||++||+||++||++ |+.++|.|.+++++|++....++.||+|++|. +.+.
T Consensus 11 ~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~ 89 (172)
T 2k6v_A 11 LLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEV 89 (172)
T ss_dssp EEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHH
T ss_pred ccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHH
Confidence 45888999999 9999 99999999999999999999998 99999999999999874100279999999985 3466
Q ss_pred HHHhhhcCCcccccCCchHH---HHHHHHcc---------------ccccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIMPWLAIPYEDRAR---QDLCRIFN---------------IKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~---~~l~~~~~---------------v~~~P~~~lid~~G~v~~~~ 300 (390)
++++.+.++ ..+++..+.. ..+++.|+ +.++|+++||| +|+|+.+.
T Consensus 90 ~~~~~~~~~-~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~ 153 (172)
T 2k6v_A 90 ADRYAKAFH-PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLY 153 (172)
T ss_dssp HHHHHHHHC-TTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEE
T ss_pred HHHHHHHhC-CCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEE
Confidence 777776554 3444444333 57877776 46789999999 99999873
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-19 Score=146.12 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=98.0
Q ss_pred cceeecCCCc-cccC--ccCCCEEEEEEecCCChh--hhhhHHHHHHHHHHH-hhCCCcEEEEEEecCCChhHHHHHHHh
Q 016404 25 VEFLLSRQGK-VPLS--SCGGKTICLFFSANWCRP--CKTFTPQLVQLYDTL-RTRGTELEVIFISFDHDENGFEEHFKC 98 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~--~~~gk~vll~F~a~~C~~--C~~~~p~l~~~~~~~-~~~~~~~~vv~v~~d~~~~~~~~~~~~ 98 (390)
.+.|.+.+|+ ++++ +++||+++|+||++||++ |+.++|.|.++++++ ++.+ +++++|++|.+.+.+++|+++
T Consensus 13 ~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~ 90 (150)
T 3fw2_A 13 FFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY--IGMLGISLDVDKQQWKDAIKR 90 (150)
T ss_dssp CCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSS--EEEEEEECCSCHHHHHHHHHH
T ss_pred ccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCC--eEEEEEEcCCCHHHHHHHHHH
Confidence 4559999999 9999 999999999999999999 999999999999999 6665 999999999988899999997
Q ss_pred CCCcceec---ChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 99 MPWLAVPF---DETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 99 ~~~~~~~~---~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
++. .+|. ..+....+++.|++.++|+++++|++|+++.+.
T Consensus 91 ~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 91 DTL-DWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp TTC-CSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred hCC-CceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence 763 3333 222357899999999999999999999998765
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=152.30 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=99.1
Q ss_pred HhhccCCceEE-eC----CC-----Ceeeeccc-CCc-EEEEEEccCCCcccHhh-HHHHHHHHHHhhcccCCceE-EEE
Q 016404 178 LLAIEGRDYVL-SR----DH-----RKITVSEL-AGK-TIGLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFE-VVL 243 (390)
Q Consensus 178 l~g~~~p~f~l-~~----~g-----~~~~l~~~-~gk-~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~-vv~ 243 (390)
.+|.++|+|++ +. +| +.++++++ +|| +||++||++||++|+.+ +|.|++++++|++ .+++ |++
T Consensus 8 ~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~---~g~~~vv~ 84 (171)
T 2pwj_A 8 DILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKA---KGVDSVIC 84 (171)
T ss_dssp --CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHH---TTCSEEEE
T ss_pred cccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEE
Confidence 45779999999 65 47 89999996 996 77789999999999999 9999999999986 7888 999
Q ss_pred EecCCCHHHHHHhhhcCCc-ccccCCchHHHHHHHHccccc-----------cceEEEECCCCcEEeeC
Q 016404 244 VSTDRDHKEFDLNHSIMPW-LAIPYEDRARQDLCRIFNIKG-----------IPALVLIGPDGKTISTN 300 (390)
Q Consensus 244 v~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~~-----------~P~~~lid~~G~v~~~~ 300 (390)
|+.|. ....+++.+.+++ ..+|+..|.+..+++.||+.. .|+.++|| +|+|++..
T Consensus 85 Is~d~-~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~ 151 (171)
T 2pwj_A 85 VAIND-PYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALN 151 (171)
T ss_dssp EESSC-HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred EeCCC-HHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEE
Confidence 99984 5567777777776 478888888899999999853 56888888 99999983
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-19 Score=157.03 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=100.8
Q ss_pred HhhccCCceEE----eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHH
Q 016404 178 LLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 252 (390)
Q Consensus 178 l~g~~~p~f~l----~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 252 (390)
.+|.++|+|++ +.+|++++|++++||++||+|| ++||++|..++|.|++++++|++ .+++||+|++|.. ..
T Consensus 63 ~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~---~gv~vv~IS~D~~-~~ 138 (254)
T 3tjj_A 63 KISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS---INTEVVACSVDSQ-FT 138 (254)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHT---TTEEEEEEESSCH-HH
T ss_pred CCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEcCCCH-HH
Confidence 36999999996 3367899999999999999999 99999999999999999999986 7899999999853 34
Q ss_pred HHHhhhcC------CcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
..++.+.. .-+.+|+..|....+++.||+. .+|++||||++|+|+++.
T Consensus 139 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~ 198 (254)
T 3tjj_A 139 HLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT 198 (254)
T ss_dssp HHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEE
Confidence 44444432 1367788778788999999986 589999999999999883
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-19 Score=159.01 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=112.1
Q ss_pred hhccCCceEE-eC-CCC--eeeecc-cCCcEEEEEEc-cCCCcccH-hhHHHHHHHHHHhhcccCCce-EEEEEecCCCH
Q 016404 179 LAIEGRDYVL-SR-DHR--KITVSE-LAGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCF-EVVLVSTDRDH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~-~g~--~~~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~-~vv~v~~d~~~ 250 (390)
+|.++|+|++ +. +|+ .+++++ ++||++||+|| ++||++|+ .++|.|++++++|++ .++ +|++|+.|. .
T Consensus 5 ~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~---~~~~~vv~is~d~-~ 80 (241)
T 1nm3_A 5 EGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK---YGVDDILVVSVND-T 80 (241)
T ss_dssp TTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHH---TTCCEEEEEESSC-H
T ss_pred CCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEEcCC-H
Confidence 5889999999 75 677 999999 89999999999 99999999 999999999999986 789 999999985 5
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHcccc-----------ccceEEEECCCCcEEeeCcchhhhhcCccCC--CCCh
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTNGKEMISLYGAKAF--PFTE 317 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~--p~~~ 317 (390)
....++.+.+++..+|+..|.+..+++.||+. ..|+++|| ++|+|++.. .|.... |...
T Consensus 81 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~-------~~~~~~~~~~~~ 152 (241)
T 1nm3_A 81 FVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMF-------IEPNEPGDPFKV 152 (241)
T ss_dssp HHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEE-------ECCSCSSCCCSS
T ss_pred HHHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEE-------EeccCCCcccee
Confidence 66777777777555888888888999999986 45999999 999999883 332221 2222
Q ss_pred hhHHHHHHHHHH
Q 016404 318 SRIAEIETALKK 329 (390)
Q Consensus 318 ~~~~~l~~~~~~ 329 (390)
...+++.+.++.
T Consensus 153 ~~~~~il~~l~~ 164 (241)
T 1nm3_A 153 SDADTMLKYLAP 164 (241)
T ss_dssp SSHHHHHHHHCT
T ss_pred cCHHHHHHHhhh
Confidence 456666665543
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=150.27 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=88.0
Q ss_pred hccCCceEE-eCC-CCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 180 AIEGRDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 180 g~~~p~f~l-~~~-g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
...+|+|++ +.+ |+.++|++++||+|||+|||+||++| .++|.|++++++|++ .+++||+|++|. +.
T Consensus 14 ~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~---~g~~vlgvs~d~f~~~e~~~~ 89 (207)
T 2r37_A 14 SGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAP---FGLVILGFPCNQFGKQEPGEN 89 (207)
T ss_dssp -CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGG---GTEEEEEEECCCBTTCCCSCH
T ss_pred cCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhcc---CCEEEEEEECcccCcCCCCCH
Confidence 567899999 999 99999999999999999999999999 799999999999986 689999999762 34
Q ss_pred HHHHHhhh------cCCcccccCCchH----------HHHHHHHc-------c--------------ccccceEEEECCC
Q 016404 251 KEFDLNHS------IMPWLAIPYEDRA----------RQDLCRIF-------N--------------IKGIPALVLIGPD 293 (390)
Q Consensus 251 ~~~~~~~~------~~~~~~~~~~~~~----------~~~l~~~~-------~--------------v~~~P~~~lid~~ 293 (390)
++..++++ .++ +.+|+..+. ...+.... + |...|++||||++
T Consensus 90 ~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~ 168 (207)
T 2r37_A 90 SEILPTLKYVRPGGGFV-PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPD 168 (207)
T ss_dssp HHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTT
T ss_pred HHHHHHHHhcchhhccC-ccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCC
Confidence 66777776 544 345543210 11122221 1 2233899999999
Q ss_pred CcEEee
Q 016404 294 GKTIST 299 (390)
Q Consensus 294 G~v~~~ 299 (390)
|+|+.+
T Consensus 169 G~i~~~ 174 (207)
T 2r37_A 169 GIPIMR 174 (207)
T ss_dssp SCEEEE
T ss_pred CcEEEE
Confidence 999988
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=146.22 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=98.8
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...+.+.+|+ +++++++||+++|+||++||++|+.+.|.|.++++++++.+ +.++.|++|.+.+.+++|++++++..
T Consensus 13 ~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~~~~ 90 (148)
T 3hcz_A 13 NLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWLKFIRSKKIGG 90 (148)
T ss_dssp CCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGT--EEEEEEECCSSSHHHHHHHHHHTCTT
T ss_pred ceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--EEEEEEEecCCHHHHHHHHHHcCCCC
Confidence 3558899999 99999999999999999999999999999999999999876 99999999988889999999887544
Q ss_pred eecChhHHHH--HHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 104 VPFDETLHKK--LRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~~~~~~~~--l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
++...+.... +++.|++.++|+++++|++|+++.+.
T Consensus 91 ~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 128 (148)
T 3hcz_A 91 WLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKR 128 (148)
T ss_dssp SEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEES
T ss_pred ceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEec
Confidence 5553333334 89999999999999999999998654
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.5e-19 Score=144.76 Aligned_cols=112 Identities=21% Similarity=0.449 Sum_probs=99.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...|.+.+|+ +++++++||+++|+||++||++|+.+.|.|.++++++++.+ +.++.|++|.+.+.+++|++++++ .
T Consensus 8 ~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~v~~d~~~~~~~~~~~~~~~-~ 84 (151)
T 2f9s_A 8 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKSYGV-N 84 (151)
T ss_dssp CCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHHHHTC-C
T ss_pred cceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHHHHHcCC-C
Confidence 4568999999 99999999999999999999999999999999999998765 999999999888899999998773 4
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+|+..+....+++.|++.++|+++++|++|+++.+.
T Consensus 85 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 120 (151)
T 2f9s_A 85 FPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVV 120 (151)
T ss_dssp SCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEE
T ss_pred ceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEE
Confidence 566555567899999999999999999999988643
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-19 Score=143.71 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=98.0
Q ss_pred cceeecCCCc-cccC--ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHH-hhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEFLLSRQGK-VPLS--SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL-RTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~--~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~-~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
...+.+.+|+ ++++ +++||+++|+||++||++|+.++|.|.++++++ ++.+ +.++.|++|.+.+.+++++++++
T Consensus 13 ~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~ 90 (148)
T 3fkf_A 13 YFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGISLDIDREAWETAIKKDT 90 (148)
T ss_dssp CCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTT--EEEEEEECCSCHHHHHHHHHHTT
T ss_pred CeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCC--eEEEEEECCCCHHHHHHHHHHcC
Confidence 4558999999 9999 999999999999999999999999999999999 7666 99999999999989999999776
Q ss_pred Ccceec---ChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016404 101 WLAVPF---DETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 101 ~~~~~~---~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
. .++. ..+....+++.|++.++|+++++|++|+++.+..
T Consensus 91 ~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 132 (148)
T 3fkf_A 91 L-SWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI 132 (148)
T ss_dssp C-CSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC
T ss_pred C-CceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC
Confidence 3 3333 2223678999999999999999999999986543
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=144.40 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=91.2
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCc-ccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC---HHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEF 253 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~ 253 (390)
+|.++|+|++ +.+|+++++++++||+|||+||++||+ +|...++.|.++++.+++ .+.++.+|+|++|.+ .+.+
T Consensus 8 ~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~-~~~~v~~v~isvDp~~Dtp~~l 86 (170)
T 4hde_A 8 LNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKE-EKLDVQFVSFSVDPDLDKPENL 86 (170)
T ss_dssp CCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHH-TTCCCEEEEEESCTTTCCHHHH
T ss_pred CCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhc-ccccceeEeeecCcccccHHHH
Confidence 5888999999 999999999999999999999999997 699999999999999976 456799999999853 4566
Q ss_pred HHhhhcCC-----cccccCCc-hH-HHHHHHHccc----------cccceEEEECCCCcEEee
Q 016404 254 DLNHSIMP-----WLAIPYED-RA-RQDLCRIFNI----------KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 254 ~~~~~~~~-----~~~~~~~~-~~-~~~l~~~~~v----------~~~P~~~lid~~G~v~~~ 299 (390)
+++.+.++ |..+.... .. .......|++ ...|+++|||++|+|+..
T Consensus 87 ~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~ 149 (170)
T 4hde_A 87 KAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKK 149 (170)
T ss_dssp HHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEE
T ss_pred HHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEE
Confidence 66666543 32222211 11 1222233332 235789999999999976
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-20 Score=153.47 Aligned_cols=121 Identities=31% Similarity=0.590 Sum_probs=104.8
Q ss_pred cceeecCCCc-cccCc-cCCC-EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC--
Q 016404 25 VEFLLSRQGK-VPLSS-CGGK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM-- 99 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~-~~gk-~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-- 99 (390)
...|.+.+|+ +++++ ++|| +++|+||++||++|+.++|.|.++++++++.+.++++++|++|.+.+.+++|++++
T Consensus 6 ~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~ 85 (143)
T 2lus_A 6 GIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHG 85 (143)
Confidence 3568899999 99999 9999 99999999999999999999999999996543348999999998888889999866
Q ss_pred CCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccccccccc
Q 016404 100 PWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIE 145 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~ 145 (390)
+|..+++..+....+++.|++.++|+++++|++|+++.+++...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~ 131 (143)
T 2lus_A 86 DWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQ 131 (143)
Confidence 4677777777778899999999999999999999999877655443
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-19 Score=147.54 Aligned_cols=110 Identities=14% Similarity=0.215 Sum_probs=93.6
Q ss_pred eeec-CCCc-cccCccCCCEEEEEEecCCChhhhhh-HHHHHHHHHHHhhCCCcEEEEEEecC------CChhHHHHHHH
Q 016404 27 FLLS-RQGK-VPLSSCGGKTICLFFSANWCRPCKTF-TPQLVQLYDTLRTRGTELEVIFISFD------HDENGFEEHFK 97 (390)
Q Consensus 27 ~l~~-~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~-~p~l~~~~~~~~~~~~~~~vv~v~~d------~~~~~~~~~~~ 97 (390)
.+.+ .+|+ +++++++||+++|+||++||++|+.+ +|.|.++++++++++ +.+++|++| .+.+.+++|++
T Consensus 13 ~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~~~~~~~~~~ 90 (160)
T 3lor_A 13 DVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHHDVMTPEALKVFID 90 (160)
T ss_dssp CEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGSCHHHHHHHHH
T ss_pred ccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCC--cEEEEEeccccccccCCHHHHHHHHH
Confidence 3666 7899 99999999999999999999999995 999999999998876 999999984 57778999999
Q ss_pred hCCCcceecChhHHHH------HHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 98 CMPWLAVPFDETLHKK------LRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 98 ~~~~~~~~~~~~~~~~------l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
++++ .+|...+.... +++.|++.++|+++++|++|+++.+.
T Consensus 91 ~~~~-~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 137 (160)
T 3lor_A 91 EFGI-KFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQ 137 (160)
T ss_dssp HTTC-CSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEE
T ss_pred HcCC-CCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEe
Confidence 8773 34543333344 89999999999999999999998653
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=152.42 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=99.6
Q ss_pred hhccCCceEE-eCCCCeeeecccCCc-EEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 255 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 255 (390)
+|..+|+|++ +.+| ++++++++|| ++||+|| ++||++|..+++.|++++++|++ .+++||+|++|.. ....+
T Consensus 5 iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~---~~v~vigIS~D~~-~~~~~ 79 (233)
T 2v2g_A 5 LGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKK---RGVKLIALSCDNV-ADHKE 79 (233)
T ss_dssp TTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHH---TTEEEEEEESSCH-HHHHH
T ss_pred CCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH---cCCEEEEEcCCCH-HHHHH
Confidence 6899999999 8899 9999999997 9999998 99999999999999999999987 7899999999963 33333
Q ss_pred hhh------cCC-cccccCCchHHHHHHHHcccc------------ccceEEEECCCCcEEeeC
Q 016404 256 NHS------IMP-WLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 256 ~~~------~~~-~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~~ 300 (390)
+.+ ..+ .+.+|+..|....+++.||+. .+|++||||++|+|+...
T Consensus 80 ~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~ 143 (233)
T 2v2g_A 80 WSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSI 143 (233)
T ss_dssp HHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEE
Confidence 333 331 467788778888999999985 579999999999999883
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=141.71 Aligned_cols=109 Identities=17% Similarity=0.308 Sum_probs=92.0
Q ss_pred eeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 27 ~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
+....+|+ +++++++||++||+||++||++|+.++|.|.++++++++.+ +++++|++| +.+.+++|+++++. .+|
T Consensus 8 ~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d-~~~~~~~~~~~~~~-~~~ 83 (151)
T 3raz_A 8 LAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIALD-TSDNIGNFLKQTPV-SYP 83 (151)
T ss_dssp EEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTT--EEEEEEESS-CHHHHHHHHHHSCC-SSC
T ss_pred hhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECC-ChHHHHHHHHHcCC-CCc
Confidence 33337899 99999999999999999999999999999999999997665 999999997 45678999997762 333
Q ss_pred c---ChhHHHHHHHhcC--cCCCCeEEEEcCCCcccccc
Q 016404 106 F---DETLHKKLRIRYR--VDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 106 ~---~~~~~~~l~~~~~--v~~~P~~~~~d~~G~i~~~~ 139 (390)
. .......+++.|+ +.++|+++++|++|+++.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 122 (151)
T 3raz_A 84 IWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTI 122 (151)
T ss_dssp EEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEEC
T ss_pred eEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEE
Confidence 3 3345678999999 99999999999999987543
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=142.97 Aligned_cols=113 Identities=23% Similarity=0.406 Sum_probs=99.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...+.+.+|+ +++++++||+++|+||++||++|+.+.|.|.++++++++.+ +.++.|++|.+.+.+++++++.++..
T Consensus 12 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~~~~ 89 (152)
T 2lja_A 12 SFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKAWENMVTKDQLKG 89 (152)
T ss_dssp SCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSS--EEEEEEECCSCHHHHHHHHHHHTCCS
T ss_pred ccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCC--eEEEEEEccCcHHHHHHHHHhcCCCC
Confidence 3568899999 99999999999999999999999999999999999998765 99999999988888999999776554
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.++..+....+++.|++.++|+++++|++|+++.+.
T Consensus 90 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 125 (152)
T 2lja_A 90 IQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISAN 125 (152)
T ss_dssp EEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESS
T ss_pred ceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEcc
Confidence 555444457899999999999999999999988653
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=141.46 Aligned_cols=111 Identities=20% Similarity=0.356 Sum_probs=98.8
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...|.+ +|+ +++++++||+++|+||++||++|+.+.|.|.++++++++.+ +++++|++|.+.+.++++++++++ .
T Consensus 11 ~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~~-~ 86 (152)
T 3gl3_A 11 DFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAMKFLAQVPA-E 86 (152)
T ss_dssp CCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSHHHHHHHHHHSCC-C
T ss_pred ceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEECCCCHHHHHHHHHHcCC-C
Confidence 345888 899 99999999999999999999999999999999999999877 999999999998899999998874 5
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
++...+....+++.|++.++|+++++|++|+++.+.
T Consensus 87 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 122 (152)
T 3gl3_A 87 FTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQH 122 (152)
T ss_dssp SEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEE
T ss_pred CceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEE
Confidence 555455557899999999999999999999998654
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-19 Score=146.73 Aligned_cols=110 Identities=13% Similarity=0.221 Sum_probs=97.3
Q ss_pred eeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-----ChhHHHHHHHhCC
Q 016404 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----DENGFEEHFKCMP 100 (390)
Q Consensus 27 ~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~ 100 (390)
.|.+.+|+ +++++++||+++|+||++||++|+.++|.|.+++++++..+ +++++|++|. +.+.+++|+..+.
T Consensus 22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~ 99 (164)
T 2h30_A 22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQKWYAGLN 99 (164)
T ss_dssp TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--cEEEEEEcCCCccccCHHHHHHHHHhCC
Confidence 78999999 99999999999999999999999999999999999998776 9999999863 4557888888877
Q ss_pred CcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+..++...+....+++.|++.++|+++++|++|+++.+
T Consensus 100 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 137 (164)
T 2h30_A 100 YPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRI 137 (164)
T ss_dssp CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred CCcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEE
Confidence 65566666666789999999999999999999998864
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=144.02 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=93.0
Q ss_pred ceeec--CCCc-cccCccCCCEEEEEEecCCChhhhhh-HHHHHHHHHHHhhCCCcEEEEEEecC------CChhHHHHH
Q 016404 26 EFLLS--RQGK-VPLSSCGGKTICLFFSANWCRPCKTF-TPQLVQLYDTLRTRGTELEVIFISFD------HDENGFEEH 95 (390)
Q Consensus 26 ~~l~~--~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~-~p~l~~~~~~~~~~~~~~~vv~v~~d------~~~~~~~~~ 95 (390)
+.|.+ .+|+ +++++++||+++|+||++||++|+.+ +|.|.++++++++.+ +.+++|++| .+.+.+++|
T Consensus 9 f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~~~~~~~~ 86 (158)
T 3eyt_A 9 LQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHHEAMTPISLKAF 86 (158)
T ss_dssp CCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGSCHHHHHHH
T ss_pred ceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCC--EEEEEEEecccccccCCHHHHHHH
Confidence 44777 3788 99999999999999999999999996 999999999998766 999999985 467789999
Q ss_pred HHhCCCcceecChhHHH-----HHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 96 FKCMPWLAVPFDETLHK-----KLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-----~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+++++. .+|...+... .+++.|++.++|+++++|++|+++.+.
T Consensus 87 ~~~~~~-~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 134 (158)
T 3eyt_A 87 LHEYRI-KFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHH 134 (158)
T ss_dssp HHHTTC-CSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEE
T ss_pred HHHcCC-CceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEE
Confidence 998773 3444333223 689999999999999999999998654
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=149.96 Aligned_cols=113 Identities=7% Similarity=0.056 Sum_probs=97.0
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCC-CcccH-----hhHHHHHHHHHHhhcccCCceEEEEEecCCCHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCR-----SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 251 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~w-C~~C~-----~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~ 251 (390)
+|.++|+|++ +.+|+.+++++++||++||+||++| ||+|. .+++.|.++ | .++.||+||.|. ..
T Consensus 24 vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~-----~gv~VvgIS~Ds-~~ 94 (224)
T 3keb_A 24 KGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W-----PHLKLIVITVDS-PS 94 (224)
T ss_dssp TTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C-----TTSEEEEEESSC-HH
T ss_pred CCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c-----CCCEEEEEECCC-HH
Confidence 5899999999 9999999999999999999999998 99999 888887776 3 458999999984 55
Q ss_pred HHHHhhhcCCcccccCCchH-HHHHHHHccccc---------cceEEEECCCCcEEeeC
Q 016404 252 EFDLNHSIMPWLAIPYEDRA-RQDLCRIFNIKG---------IPALVLIGPDGKTISTN 300 (390)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~v~~---------~P~~~lid~~G~v~~~~ 300 (390)
...++...++...+|+..|. +..+++.||+.. .|++||||++|+|+++.
T Consensus 95 ~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~ 153 (224)
T 3keb_A 95 SLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSE 153 (224)
T ss_dssp HHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEE
T ss_pred HHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEE
Confidence 66677776665468888887 589999999864 79999999999999884
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-18 Score=143.26 Aligned_cols=111 Identities=19% Similarity=0.168 Sum_probs=99.1
Q ss_pred cceeecCCCc-cccCccCCCE-EEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGKT-ICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~-vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
.+.|.+.+|+ +++++++||+ ++|+|| ++||++|+.++|.|.++++++++.+ +++++|++| +.+.+++|++++++
T Consensus 10 ~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d-~~~~~~~~~~~~~~ 86 (161)
T 3drn_A 10 LFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD--VVVIGVSSD-DINSHKRFKEKYKL 86 (161)
T ss_dssp CCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC--EEEEEEESC-CHHHHHHHHHHTTC
T ss_pred CeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEeCC-CHHHHHHHHHHhCC
Confidence 4569999999 9999999997 999999 9999999999999999999999877 999999998 57789999998873
Q ss_pred cceecChhHHHHHHHhcCcCC----CCeEEEEcCCCcccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVDR----IPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~----~P~~~~~d~~G~i~~~~ 139 (390)
.+|+..+....+++.|++.+ +|+++++|++|+++...
T Consensus 87 -~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~ 127 (161)
T 3drn_A 87 -PFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIY 127 (161)
T ss_dssp -CSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEE
T ss_pred -CceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEE
Confidence 46665566689999999999 99999999999998654
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=143.37 Aligned_cols=108 Identities=20% Similarity=0.341 Sum_probs=97.6
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-----------------
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD----------------- 86 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d----------------- 86 (390)
...+.+.+|+ +++++++||++||+||++||++|+.++|.|.+++++++ + ++++.|++|
T Consensus 19 ~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~--v~vv~i~~d~~~~~~~~~~~~~~~~~ 94 (165)
T 3ha9_A 19 SFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--E--ISVIAIDFWTAEALKALGLNKPGYPP 94 (165)
T ss_dssp CCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--T--EEEEEEECCSHHHHHHHTCCSTTSCC
T ss_pred CCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--C--cEEEEEEecccccccccccccccCCC
Confidence 4569999999 99999999999999999999999999999999999998 3 999999999
Q ss_pred -CChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 87 -HDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
.+.+.+++|++++++..+|...+ ...+++.|++.++|+++++|++|+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 95 PDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY 145 (165)
T ss_dssp CCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred CCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence 78889999999887546666444 678999999999999999999999987
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-18 Score=149.59 Aligned_cols=118 Identities=14% Similarity=0.232 Sum_probs=97.3
Q ss_pred hhccCCceEE-eCCCCeeeecccCCc--EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--HHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGK--TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF 253 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~ 253 (390)
+|..+|+|++ +.+| ++++++++|| +||++||++||++|..+++.|++++++|++ .+++||+|++|... .+|
T Consensus 7 ~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~---~~v~vi~IS~D~~~~~~~~ 82 (224)
T 1prx_A 7 LGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK---RNVKLIALSIDSVEDHLAW 82 (224)
T ss_dssp TTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSCHHHHHHH
T ss_pred CcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH---CCCEEEEEcCCCHHHHHHH
Confidence 6899999999 8899 9999999997 566677999999999999999999999986 78999999999642 233
Q ss_pred HHhhhcC------CcccccCCchHHHHHHHHcccc------------ccceEEEECCCCcEEeeC
Q 016404 254 DLNHSIM------PWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 254 ~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~~ 300 (390)
.+.+... ..+.+|+..|....+++.||+. .+|++||||++|+|+...
T Consensus 83 ~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~ 147 (224)
T 1prx_A 83 SKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSI 147 (224)
T ss_dssp HHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEE
T ss_pred HHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEE
Confidence 3332211 2356777778788999999984 379999999999999883
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-18 Score=140.56 Aligned_cols=112 Identities=21% Similarity=0.445 Sum_probs=98.5
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC-hhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~ 102 (390)
...|.+.+|+ +++++++||+++|+||++||++|+.+.|.|.++++++++.+ +.+++|++|.+ .+.+++|++++++
T Consensus 10 ~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~~~- 86 (154)
T 3kcm_A 10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVAVEEFFRKTGF- 86 (154)
T ss_dssp CCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSS--EEEEEEECCTTHHHHHHHHHHHHCC-
T ss_pred CeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEEcCCcchHHHHHHHHHcCC-
Confidence 4558999999 99999999999999999999999999999999999998765 99999999987 6778899987763
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.+|+..+....+++.|++.++|+++++|++|+++.+.
T Consensus 87 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 123 (154)
T 3kcm_A 87 TLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKV 123 (154)
T ss_dssp CCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEE
T ss_pred CeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEE
Confidence 4556555667899999999999999999999988643
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-18 Score=137.05 Aligned_cols=112 Identities=23% Similarity=0.363 Sum_probs=96.9
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEe-----cCCChhHHHHHHHh
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS-----FDHDENGFEEHFKC 98 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~-----~d~~~~~~~~~~~~ 98 (390)
...|.+.+|+ +++++++||+++|+||++||++|+.+.|.|.++++++++. +.++.|. .+.+.+.+++++++
T Consensus 4 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~v~i~~~~~~~~~~~~~~~~~~~~ 80 (138)
T 4evm_A 4 DFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDD---YVVLTVVSPGHKGEQSEADFKNWYKG 80 (138)
T ss_dssp CCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTT---EEEEEEECTTSTTCCCHHHHHHHHTT
T ss_pred cceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCC---cEEEEEEcCCCCchhhHHHHHHHHhh
Confidence 4568999999 9999999999999999999999999999999999985443 8888884 34567789999999
Q ss_pred CCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 99 MPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+++..++...+....+++.|++.++|+++++|++|+++.+.
T Consensus 81 ~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 121 (138)
T 4evm_A 81 LDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTH 121 (138)
T ss_dssp CCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred cCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEee
Confidence 88767777666667899999999999999999999987643
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-18 Score=148.18 Aligned_cols=118 Identities=14% Similarity=0.187 Sum_probs=96.7
Q ss_pred hhccCCceEE-eC--CCCeeeecccCCc--EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--H
Q 016404 179 LAIEGRDYVL-SR--DHRKITVSELAGK--TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--K 251 (390)
Q Consensus 179 ~g~~~p~f~l-~~--~g~~~~l~~~~gk--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~ 251 (390)
+|..+|+|++ +. +| ++++++++|| +||++||++||++|..+++.|++++++|++ .+++||+|++|... .
T Consensus 5 iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~---~~v~vi~vS~D~~~~~~ 80 (220)
T 1xcc_A 5 LGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK---LNCKLIGFSCNSKESHD 80 (220)
T ss_dssp TTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHHH
T ss_pred CCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCCHHHHH
Confidence 6899999999 77 88 9999999998 555556999999999999999999999986 78999999999632 3
Q ss_pred HHHHhhhc---CCcccccCCchHHHHHHHHcccc------------ccceEEEECCCCcEEeeC
Q 016404 252 EFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 252 ~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~~ 300 (390)
+|.+.+.. ...+.+|+..|.+..+++.||+. .+|+++|||++|+|++..
T Consensus 81 ~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~ 144 (220)
T 1xcc_A 81 KWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV 144 (220)
T ss_dssp HHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEE
Confidence 33333221 12356788778888999999983 479999999999999884
|
| >1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-18 Score=128.72 Aligned_cols=79 Identities=39% Similarity=0.812 Sum_probs=74.6
Q ss_pred CccCCCCChhhHHHHHHHHHHhcCCCCCccccCCCc-cceeecCCCceeecccCCCCceEEEEcCCCCCCCccccccccC
Q 016404 309 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHE-HELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGIN 387 (390)
Q Consensus 309 g~~~~p~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~-~~l~l~~~~~~iC~~C~e~g~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
|+++|||+++++.+|.+.+.+.-..+|..+.++.|| |.|.+....+|.|+.|++.+.+|.|+|..|+|+||+.||+.+.
T Consensus 1 ~~~a~pfte~~~~~~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred CCcccccCHHHHHHHHHHHhHHHHcCCceecCCCCCCCccEEeeCCCeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCC
Confidence 678999999999999999999999999999999995 9999997779999999999999999999999999999998654
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-18 Score=150.72 Aligned_cols=113 Identities=14% Similarity=0.204 Sum_probs=99.5
Q ss_pred cceeecCCCc-cccCccCCC-EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEH 95 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk-~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~ 95 (390)
.+.|.+.+|+ +++++++|| ++||+||++||++|+.++|.|.++++++++.+ +++++|++| .+.+.+++|
T Consensus 40 ~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d~~~~~~~d~~~~~~~~ 117 (218)
T 3u5r_E 40 DFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQG--LAVVAINSNDAQAFPEETLERVGAE 117 (218)
T ss_dssp CCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTT--EEEEEEECSCTTTCGGGSHHHHHHH
T ss_pred CcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCcccccccCCHHHHHHH
Confidence 3559999999 999999999 59999999999999999999999999998877 999999997 567788999
Q ss_pred HHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccc
Q 016404 96 FKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~ 140 (390)
+++++ +.+|+..+....+++.|++.++|+++|+|++|+++++..
T Consensus 118 ~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~ 161 (218)
T 3u5r_E 118 VKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQ 161 (218)
T ss_dssp HHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEEC
T ss_pred HHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEecc
Confidence 99876 356665556678999999999999999999999986544
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-18 Score=136.86 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=96.1
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...+.+.+|+ +++++++||+++|+||++||++|+.+.|.|.+++++++ + +.++.|++|.+.+.+++|++++++ .
T Consensus 6 ~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~~-~ 80 (136)
T 1lu4_A 6 QFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--A--VTFVGIATRADVGAMQSFVSKYNL-N 80 (136)
T ss_dssp CCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHHHTC-C
T ss_pred CeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--C--cEEEEEEcCCCHHHHHHHHHHcCC-C
Confidence 4568999999 99999999999999999999999999999999999987 3 889999999989999999998774 5
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
+|...+....+++.|++.++|+++++|++|+++
T Consensus 81 ~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~ 113 (136)
T 1lu4_A 81 FTNLNDADGVIWARYNVPWQPAFVFYRADGTST 113 (136)
T ss_dssp SEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred ceEEECCchhHHHhcCCCCCCEEEEECCCCcEE
Confidence 566555567899999999999999999999987
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-18 Score=138.78 Aligned_cols=110 Identities=22% Similarity=0.472 Sum_probs=96.6
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---ChhHHHHHHHhCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~~~ 100 (390)
...+.+.+|+ +++++ +||+++|+||++||++|+.++|.|.++++++++.+ +.++.|++|. +.+.+++|+++++
T Consensus 17 ~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~~~~ 93 (145)
T 3erw_A 17 VFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQNQQVVEDFIKANK 93 (145)
T ss_dssp EEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSS--EEEEEEECGGGSSCHHHHHHHHHHTT
T ss_pred CceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCC--EEEEEEEccCCcCCHHHHHHHHHHcC
Confidence 3459999999 99999 99999999999999999999999999999998655 9999999986 7788999999876
Q ss_pred CcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+.+|+..+....+++.|++.++|+++++|++|+++.+
T Consensus 94 -~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 130 (145)
T 3erw_A 94 -LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKT 130 (145)
T ss_dssp -CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEE
T ss_pred -CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEE
Confidence 3466655556789999999999999999999998754
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=150.37 Aligned_cols=119 Identities=11% Similarity=0.169 Sum_probs=99.4
Q ss_pred HhhccCCceEE-eCCCCeeee-ccc--CCcE-EEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016404 178 LLAIEGRDYVL-SRDHRKITV-SEL--AGKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l-~~~--~gk~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
.+|.++|+|++ +.+| ++++ +++ +||+ ||++||++||++|..+++.|++++++|++ .+++||+|++|...
T Consensus 6 ~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~---~gv~VI~VS~Ds~~~~ 81 (249)
T 3a2v_A 6 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR---LGVDLIGLSVDSVFSH 81 (249)
T ss_dssp CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHH---TTEEEEEEESSCHHHH
T ss_pred CCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHh---CCcEEEEEECCCHHHH
Confidence 46899999999 8888 7999 999 9996 55688999999999999999999999986 78999999998643
Q ss_pred HHHHHhhhcC--CcccccCCchHHHHHHHHcccc-------ccceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHSIM--PWLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~~ 300 (390)
.+|.+.+... .-+.+|+..|....+++.||+. ++|+++|||++|+|+...
T Consensus 82 ~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~ 140 (249)
T 3a2v_A 82 IKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTML 140 (249)
T ss_dssp HHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEE
T ss_pred HHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEE
Confidence 3444433321 1356777778888999999997 899999999999999883
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-18 Score=135.65 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=97.3
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...+.+.+|+ +++++++||+++|+||++||++|+.+.|.|.+++++++ + +.++.|++|.+.+.++++++++++..
T Consensus 7 ~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (136)
T 1zzo_A 7 QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--E--VTFVGVAGLDQVPAMQEFVNKYPVKT 82 (136)
T ss_dssp CCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHHTTCTT
T ss_pred CcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--C--eEEEEEeCCCCHHHHHHHHHHcCCCc
Confidence 3568999999 99999999999999999999999999999999999987 3 88999999998999999999887546
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
+|...+....+++.|++.++|+++++|++|+++
T Consensus 83 ~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 83 FTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD 115 (136)
T ss_dssp SEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred eEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE
Confidence 666555667899999999999999999999986
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=137.82 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=96.7
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhhC--CCcEEEEEEecCCC---hhHHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR--GTELEVIFISFDHD---ENGFEEHFK 97 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~-C~~~~p~l~~~~~~~~~~--~~~~~vv~v~~d~~---~~~~~~~~~ 97 (390)
.++|.+.+|+ +++++++||+++|+||++||++ |+.++|.|+++++++++. ..++++++|++|.. .+.+++|++
T Consensus 5 ~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~ 84 (164)
T 2ggt_A 5 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK 84 (164)
T ss_dssp CCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred CeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHH
Confidence 4569999999 9999999999999999999998 999999999999999862 12399999999863 567889998
Q ss_pred hCC--CcceecChhHHHHHHHhcCcCCCC---------------eEEEEcCCCcccccc
Q 016404 98 CMP--WLAVPFDETLHKKLRIRYRVDRIP---------------SLIPLASDGTLIEED 139 (390)
Q Consensus 98 ~~~--~~~~~~~~~~~~~l~~~~~v~~~P---------------~~~~~d~~G~i~~~~ 139 (390)
+++ |..+....+....+++.|++..+| +++++|++|+++.+.
T Consensus 85 ~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 143 (164)
T 2ggt_A 85 EFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYF 143 (164)
T ss_dssp TTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEE
T ss_pred HcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEe
Confidence 765 333333467778899999999999 899999999998653
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=138.84 Aligned_cols=111 Identities=22% Similarity=0.346 Sum_probs=94.6
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...+.+.+|+ +++++++||++||+||++||++|+.+.|.|.++++++++.+ +.++.|++|.+.+.+++|++++++ .
T Consensus 16 ~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--v~~v~v~~d~~~~~~~~~~~~~~~-~ 92 (165)
T 3or5_A 16 SFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPNVKNYMKTQGI-I 92 (165)
T ss_dssp CCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTT--EEEEEEECSCCHHHHHHHHHHHTC-C
T ss_pred CceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHHHHHcCC-C
Confidence 4558999999 99999999999999999999999999999999999998876 999999999988899999997663 3
Q ss_pred eecChhHHHHHHHhc------CcCCCCeEEEEcCCCcccccc
Q 016404 104 VPFDETLHKKLRIRY------RVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~------~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+|...+. ..+.+.| ++.++|+++++|++|+++.+.
T Consensus 93 ~~~~~~~-~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 133 (165)
T 3or5_A 93 YPVMMAT-PELIRAFNGYIDGGITGIPTSFVIDASGNVSGVI 133 (165)
T ss_dssp SCEEECC-HHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEE
T ss_pred CceEecC-HHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEE
Confidence 3442222 2667777 899999999999999987543
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=142.76 Aligned_cols=113 Identities=22% Similarity=0.305 Sum_probs=97.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC-hhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ +++++++||+++|+||++||++|+.++|.|.++++++++.+ +++++|++|.+ .+.+++|+++++..
T Consensus 42 ~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~~ 119 (186)
T 1jfu_A 42 DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLKEANLT 119 (186)
T ss_dssp CCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHHHHTTCC
T ss_pred CcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCC--cEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 4568899999 99999999999999999999999999999999999998655 99999999965 46788999988755
Q ss_pred ceecChhHHHHHHHhcCcC----CCCeEEEEcCCCcccccc
Q 016404 103 AVPFDETLHKKLRIRYRVD----RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~----~~P~~~~~d~~G~i~~~~ 139 (390)
.+|+..+....+.+.|++. ++|+++++|++|+++.+.
T Consensus 120 ~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~ 160 (186)
T 1jfu_A 120 RLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATI 160 (186)
T ss_dssp TTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEE
T ss_pred CCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEE
Confidence 5666455557788888885 899999999999998653
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=141.84 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=94.4
Q ss_pred cceeecCCC--c-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQG--K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g--~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
.+.|.+.+| + +++++++||+++|+||++||++|+.++|.|++++++ + +++++|++|.+.+.+++|++++++
T Consensus 38 ~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~vs~~d~~~~~~~~~~~~~~ 111 (176)
T 3kh7_A 38 AFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----G--VVIYGINYKDDNAAAIKWLNELHN 111 (176)
T ss_dssp CCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CEEEEEEESCCHHHHHHHHHHTTC
T ss_pred CcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----C--CEEEEEeCCCCHHHHHHHHHHcCC
Confidence 345889999 7 999999999999999999999999999999999876 3 889999999999999999998874
Q ss_pred cceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.......+....+++.|++.++|+++++|++|+++.+.
T Consensus 112 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 149 (176)
T 3kh7_A 112 PYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKI 149 (176)
T ss_dssp CCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEE
T ss_pred CCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEE
Confidence 33333445557899999999999999999999998653
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-18 Score=141.64 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=97.7
Q ss_pred cce--eecCCCc-cccCccCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEF--LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~--l~~~~g~-~~l~~~~gk~vll~F~a-~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.++ |.+.+|+ +++++++||+++|+||+ +||++|..++|.|.++++++++.+ ++|++|++| +.+.+++|+++++
T Consensus 15 ~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d-~~~~~~~~~~~~~ 91 (163)
T 3gkn_A 15 TFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG--AKILGVSRD-SVKSHDNFCAKQG 91 (163)
T ss_dssp GGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT--CEEEEEESS-CHHHHHHHHHHHC
T ss_pred CccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHHHHHHHhC
Confidence 356 8899999 99999999999999997 999999999999999999999877 899999998 7778889998776
Q ss_pred CcceecChhHHHHHHHhcCcCC------------CCeEEEEcCCCcccccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVDR------------IPSLIPLASDGTLIEED 139 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~~------------~P~~~~~d~~G~i~~~~ 139 (390)
+.+|+..+....+++.|++.. +|+.+++|++|++++..
T Consensus 92 -~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 92 -FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp -CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE
T ss_pred -CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE
Confidence 456665566678999999987 99999999999998644
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=143.12 Aligned_cols=70 Identities=16% Similarity=0.382 Sum_probs=61.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+|||+||++|+.+.|.|.++++++++.+..+.++.|+++.+.+ ..++++|+|
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~---------------------~~l~~~~~v 87 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN---------------------SAVCRDFNI 87 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTT---------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhh---------------------HHHHHHcCC
Confidence 46999999999999999999999999999998733348888888865543 789999999
Q ss_pred CCCCeEEEEcC
Q 016404 121 DRIPSLIPLAS 131 (390)
Q Consensus 121 ~~~P~~~~~d~ 131 (390)
.++|+++++++
T Consensus 88 ~~~Pt~~~~~~ 98 (244)
T 3q6o_A 88 PGFPTVRFFXA 98 (244)
T ss_dssp CSSSEEEEECT
T ss_pred CccCEEEEEeC
Confidence 99999999984
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-17 Score=137.43 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=95.9
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhhC--CCcEEEEEEecCC---ChhHHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR--GTELEVIFISFDH---DENGFEEHFK 97 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~-C~~~~p~l~~~~~~~~~~--~~~~~vv~v~~d~---~~~~~~~~~~ 97 (390)
.++|.+.+|+ +++++++||++||+||++||++ |+.++|.|+++++++++. ..++++++|++|. +.+.+++|++
T Consensus 8 ~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~ 87 (171)
T 2rli_A 8 DFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQ 87 (171)
T ss_dssp CCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHH
T ss_pred CeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHH
Confidence 4569999999 9999999999999999999998 999999999999999752 1239999999984 4667889998
Q ss_pred hCC--CcceecChhHHHHHHHhcCcCCCC---------------eEEEEcCCCcccccc
Q 016404 98 CMP--WLAVPFDETLHKKLRIRYRVDRIP---------------SLIPLASDGTLIEED 139 (390)
Q Consensus 98 ~~~--~~~~~~~~~~~~~l~~~~~v~~~P---------------~~~~~d~~G~i~~~~ 139 (390)
+++ |..+....+....+++.|++...| +++++|++|+++.+.
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 146 (171)
T 2rli_A 88 DFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYY 146 (171)
T ss_dssp TTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEE
T ss_pred HcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEE
Confidence 765 333333445667899999999888 899999999998653
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=138.18 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=96.1
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-ChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-DENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-~~~~~~~~~~~~~~~ 102 (390)
...|.+.+|+ +++++++||+++|+||++||++|+.+.|.|.++++++++.+ +.+++|++|. +.+.+++|+++++.
T Consensus 10 ~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~- 86 (153)
T 2l5o_A 10 AFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESVRQYVKDYGL- 86 (153)
T ss_dssp SCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTT--EEEEEEECTTSCHHHHHHHHHHTTC-
T ss_pred CcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--eEEEEEecCCCCHHHHHHHHHHcCC-
Confidence 4568999999 99999999999999999999999999999999999998866 8999999864 45678899988763
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
.++...+....+++.|++.++|+++++|++|+++.+
T Consensus 87 ~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~ 122 (153)
T 2l5o_A 87 PFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKT 122 (153)
T ss_dssp CSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEE
T ss_pred CceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEE
Confidence 355544555789999999999999999999998754
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=141.91 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=94.5
Q ss_pred cceeecC--CCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcE------EEEEEecCC-ChhHHHH
Q 016404 25 VEFLLSR--QGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL------EVIFISFDH-DENGFEE 94 (390)
Q Consensus 25 ~~~l~~~--~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~------~vv~v~~d~-~~~~~~~ 94 (390)
.+.|.+. +|+ +++++++||++||+||++||++|+.++|.|.++++++++++ + +++.|++|. +.+.+++
T Consensus 39 ~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~~v~~v~v~~d~~~~~~~~~ 116 (183)
T 3lwa_A 39 DIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG--NGDTPGGTVLGINVRDYSRDIAQD 116 (183)
T ss_dssp CCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC-----CCSEEEEEEECSCCCHHHHHH
T ss_pred ceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC--CCccCCcEEEEEECCCCCHHHHHH
Confidence 3458899 999 99999999999999999999999999999999999999876 6 999999998 7888999
Q ss_pred HHHhCCCcceecChhHHHHHHHhc---CcCCCCeEEEEcCCCcccccc
Q 016404 95 HFKCMPWLAVPFDETLHKKLRIRY---RVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~---~v~~~P~~~~~d~~G~i~~~~ 139 (390)
|++++++ .+|...+....+.+.| ++.++|+++++|++|+++.+.
T Consensus 117 ~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 163 (183)
T 3lwa_A 117 FVTDNGL-DYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVF 163 (183)
T ss_dssp HHHHTTC-CSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEE
T ss_pred HHHHcCC-CccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEE
Confidence 9998763 3445344445666666 589999999999999998643
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-18 Score=144.52 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=90.9
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.++|.+.+|+ ++|++++||+++|+|| ++||++|+.++|.|.++++++++.+ +++++|+.| +.+..++|.++++ +
T Consensus 12 dF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~--~~~v~vs~d-~~~~~~~~~~~~~-~ 87 (157)
T 4g2e_A 12 DFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN--AVVLGISVD-PPFSNKAFKEHNK-L 87 (157)
T ss_dssp CCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCS--SEEEEEESS-CHHHHHHHHHHTT-C
T ss_pred CeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccC--ceEeeeccc-chhHHHHHHHHcC-C
Confidence 3559999999 9999999999999999 9999999999999999999998877 899999998 4566788998877 4
Q ss_pred ceecChhHHHHHHHhcCcC-----------CCCeEEEEcCCCccccccc
Q 016404 103 AVPFDETLHKKLRIRYRVD-----------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~-----------~~P~~~~~d~~G~i~~~~~ 140 (390)
.+|+..|...++++.||+. ..|+++++|++|+|++...
T Consensus 88 ~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~ 136 (157)
T 4g2e_A 88 NFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWV 136 (157)
T ss_dssp CSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEE
T ss_pred cEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEE
Confidence 5677666778999999974 4688999999999987654
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=143.30 Aligned_cols=120 Identities=14% Similarity=0.186 Sum_probs=102.1
Q ss_pred HHhhccCCceEE----eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC--
Q 016404 177 QLLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-- 249 (390)
Q Consensus 177 ~l~g~~~p~f~l----~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~-- 249 (390)
..+|.++|+|++ +.++++++|++++||+|||+|| +.||+.|..+++.|++.+++|++ .+++|++||+|..
T Consensus 23 ~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~---~g~~vigiS~Ds~~s 99 (216)
T 3sbc_A 23 AQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEE---QGAQVLFASTDSEYS 99 (216)
T ss_dssp CCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHH---TTEEEEEEESSCHHH
T ss_pred hhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhcc---CCceEEEeecCchhh
Confidence 457999999986 4566899999999999999999 89999999999999999999987 8999999999973
Q ss_pred HHHHHHhhhc---CCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016404 250 HKEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 250 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
...|.+.... ..-+.+|+..|.+.++++.||+- ..+.+||||++|+|++.
T Consensus 100 h~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~ 158 (216)
T 3sbc_A 100 LLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHI 158 (216)
T ss_dssp HHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEE
Confidence 3455554432 22467888889999999999983 46899999999999886
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=138.98 Aligned_cols=109 Identities=21% Similarity=0.428 Sum_probs=93.2
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...+.+.+|+ +++++++||+++|+||++||++|+.+.|.|.++++++++.+ +.++.|+.|. .+++++++++ +.
T Consensus 23 ~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~---~~~~~~~~~~-~~ 96 (158)
T 3hdc_A 23 NFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEK---RFPEKYRRAP-VS 96 (158)
T ss_dssp CCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTS--EEEEEEECSS---SCCGGGGGCC-CS
T ss_pred CceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCC--eEEEEEeCCH---HHHHHHHHcC-CC
Confidence 4569999999 99999999999999999999999999999999999998665 8899998886 3455666665 34
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+++..+....+++.|++.++|+++++|++|+++.+.
T Consensus 97 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 132 (158)
T 3hdc_A 97 FNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRV 132 (158)
T ss_dssp CEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEE
T ss_pred ceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEE
Confidence 566555567899999999999999999999988654
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=142.08 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=96.5
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~ 96 (390)
.+.|.+.+|+ +++++++||++||+||++||++|+.++|.|++++++++++ +++++|++| .+.+.+++|+
T Consensus 15 ~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~d~~~~~~~~~ 91 (188)
T 2cvb_A 15 DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPEKMAAFA 91 (188)
T ss_dssp CCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHHHHHHHH
T ss_pred CceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCccccccccCHHHHHHHH
Confidence 4568999999 9999999999999999999999999999999999999864 899999996 3566788899
Q ss_pred HhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 97 KCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
++++ +.+|+..+....+++.|++.++|+++|+|++|+++.+
T Consensus 92 ~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 92 EEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp HHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred HHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEE
Confidence 8776 3456655556789999999999999999999999876
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=134.79 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=93.6
Q ss_pred ecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-----ChhHHHHHHHhCCCc
Q 016404 29 LSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----DENGFEEHFKCMPWL 102 (390)
Q Consensus 29 ~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~ 102 (390)
.+.+|+ +++++++||+++|+||++||++|+.+.|.|.++++++++. +.++.|++|. +.+.+++++++++ +
T Consensus 15 ~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 90 (148)
T 2b5x_A 15 AWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKIKETAAEHD-I 90 (148)
T ss_dssp EEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHHHHHHHHTT-C
T ss_pred ccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCHHHHHHHHHHcC-C
Confidence 578899 9999999999999999999999999999999999999765 8899999876 6778899999877 3
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.+|+..+....+++.|++.++|+++++|++|+++.+.
T Consensus 91 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 127 (148)
T 2b5x_A 91 TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ 127 (148)
T ss_dssp CSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEE
T ss_pred CcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEe
Confidence 5565455567899999999999999999999988643
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=138.07 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=96.5
Q ss_pred cceeecCCCc-cccCccCCC-EEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk-~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
.+.|.+.+|+ +++++++|| +++|+|| ++||++|+.++|.|.++++++++.+ +++++|++| +.+..++|++++++
T Consensus 17 ~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~~~~~~~~~ 93 (160)
T 1xvw_A 17 DFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVG-PPPTHKIWATQSGF 93 (160)
T ss_dssp CCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESC-CHHHHHHHHHHHTC
T ss_pred CeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--cEEEEEeCC-CHHHHHHHHHhcCC
Confidence 4569999999 999999998 9999998 9999999999999999999998765 999999998 56678899988774
Q ss_pred cceecChhH--HHHHHHhcCcC----CCC--eEEEEcCCCccccccc
Q 016404 102 LAVPFDETL--HKKLRIRYRVD----RIP--SLIPLASDGTLIEEDL 140 (390)
Q Consensus 102 ~~~~~~~~~--~~~l~~~~~v~----~~P--~~~~~d~~G~i~~~~~ 140 (390)
.+|+..+. ...+++.|++. ++| +++++|++|+++.+..
T Consensus 94 -~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~ 139 (160)
T 1xvw_A 94 -TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEM 139 (160)
T ss_dssp -CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEE
T ss_pred -CceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEe
Confidence 55664442 57899999998 999 9999999999987643
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=143.10 Aligned_cols=112 Identities=15% Similarity=0.227 Sum_probs=97.0
Q ss_pred cceee-cCCCc-cccCccCCC-EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHH
Q 016404 25 VEFLL-SRQGK-VPLSSCGGK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEE 94 (390)
Q Consensus 25 ~~~l~-~~~g~-~~l~~~~gk-~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~ 94 (390)
.+.|. +.+|+ +++++++|| ++||+||++||++|+.++|.|.++++++++++ +++++|++| .+.+.+++
T Consensus 26 ~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~~~~~~~d~~~~~~~ 103 (196)
T 2ywi_A 26 PFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKG--VSFVAINSNDAEQYPEDSPENMKK 103 (196)
T ss_dssp CCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEECSCTTTCGGGSHHHHHH
T ss_pred ceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCccccccccCHHHHHH
Confidence 45588 99999 999999998 59999999999999999999999999998876 899999997 45677889
Q ss_pred HHHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 95 HFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
|+++++ +.+|+..+....+++.|++.++|+++++|++|+++++.
T Consensus 104 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 147 (196)
T 2ywi_A 104 VAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRG 147 (196)
T ss_dssp HHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEE
T ss_pred HHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEcc
Confidence 998776 34555445567899999999999999999999998764
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-17 Score=137.85 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=92.2
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhhCCCcEEEEEEecC---CChhHHHHHHHhC
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFD---HDENGFEEHFKCM 99 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~-~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d---~~~~~~~~~~~~~ 99 (390)
.++|.+.+|+ +++++++||+++|+||++||+ +|+.++|.|.++++++++.+.+++|++|++| .+.+.+++|++++
T Consensus 15 ~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~ 94 (174)
T 1xzo_A 15 PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANY 94 (174)
T ss_dssp CCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTS
T ss_pred CcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHc
Confidence 4569999999 999999999999999999999 9999999999999999887556999999998 4567889999977
Q ss_pred CCc--ceecChhHHHHHHHh----------------cCcCCCCeEEEEcCCCcccccc
Q 016404 100 PWL--AVPFDETLHKKLRIR----------------YRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 100 ~~~--~~~~~~~~~~~l~~~----------------~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+.. .+++..+....+.+. |++.++|+++++|++|+++.+.
T Consensus 95 ~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~ 152 (174)
T 1xzo_A 95 PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDY 152 (174)
T ss_dssp CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEE
T ss_pred CCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEE
Confidence 632 124433322333322 4567899999999999998654
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=132.64 Aligned_cols=108 Identities=22% Similarity=0.361 Sum_probs=95.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEec--CCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF--DHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~--d~~~~~~~~~~~~~~~ 101 (390)
...+.+.+|+ +++++++ |+++|+||++||++|+.+.|.|.++++++ + +++++|++ +.+.+.+++|++++++
T Consensus 13 ~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~--v~~v~v~~d~~~~~~~~~~~~~~~~~ 86 (154)
T 3ia1_A 13 DFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---G--VPFYVISREPRDTREVVLEYMKTYPR 86 (154)
T ss_dssp CCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---C--CCEEEEECCTTCCHHHHHHHHTTCTT
T ss_pred ceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---C--CeEEEEeCCCcccHHHHHHHHHHcCC
Confidence 3558999999 9999999 99999999999999999999999999999 3 78999999 5677889999998874
Q ss_pred cceecChh---HHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 102 LAVPFDET---LHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~---~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.+|...+ ....+++.|++.++|+++++|++|+++.+.
T Consensus 87 -~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 126 (154)
T 3ia1_A 87 -FIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALF 126 (154)
T ss_dssp -EEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEE
T ss_pred -CcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEE
Confidence 5666443 678999999999999999999999988644
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-17 Score=143.04 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=88.1
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~ 96 (390)
.++|.+.+|+ +++++++||+|||+||++||++|+.++|.|.++++++++++ ++|++|++| .+.+.+++|+
T Consensus 28 ~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~e~~~~~~~~~~~ 105 (187)
T 3dwv_A 28 DFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPSNQFGGQEPGNEEEIKEFV 105 (187)
T ss_dssp GSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT--CEEEEEEBCCCSSCSSSBTTHHHHSC
T ss_pred CeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC--eEEEEEECcccCCCCCCCHHHHHHHH
Confidence 3458999999 99999999999999999999999999999999999999877 999999998 3567788888
Q ss_pred HhCCCcceecCh--hH----H----HHHH----HhcCcCCCC---eEEEEcCCCcccccc
Q 016404 97 KCMPWLAVPFDE--TL----H----KKLR----IRYRVDRIP---SLIPLASDGTLIEED 139 (390)
Q Consensus 97 ~~~~~~~~~~~~--~~----~----~~l~----~~~~v~~~P---~~~~~d~~G~i~~~~ 139 (390)
++..-+.+|... +. . ..+. ..+++..+| +++|+|++|+++.+.
T Consensus 106 ~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~ 165 (187)
T 3dwv_A 106 CTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERF 165 (187)
T ss_dssp CBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEE
T ss_pred HhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEE
Confidence 843113333311 11 1 1111 345667788 999999999998653
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-17 Score=138.44 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=95.1
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ ++|++++||+++|+|| ++||++|..++|.|.+++++|++.+ ++|++|+.| +.+..++|++++. +
T Consensus 33 ~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~--~~vv~Vs~D-~~~~~~~~~~~~~-~ 108 (179)
T 3ixr_A 33 NHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN--ATVLGVSRD-SVKSHDSFCAKQG-F 108 (179)
T ss_dssp HCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESC-CHHHHHHHHHHHT-C
T ss_pred CeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-CHHHHHHHHHHcC-C
Confidence 3559999999 9999999999999998 9999999999999999999999877 999999998 4556788888765 4
Q ss_pred ceecChhHHHHHHHhcCcCC------------CCeEEEEcCCCcccccc
Q 016404 103 AVPFDETLHKKLRIRYRVDR------------IPSLIPLASDGTLIEED 139 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~------------~P~~~~~d~~G~i~~~~ 139 (390)
.+|+..+....+++.|++.. .|+++|+|++|++++..
T Consensus 109 ~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~ 157 (179)
T 3ixr_A 109 TFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW 157 (179)
T ss_dssp CSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE
T ss_pred ceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE
Confidence 55665566678999999853 69999999999998643
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=137.97 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=94.9
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhhC-CCcEEEEEEecCC---ChhHHHHHHHh
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR-GTELEVIFISFDH---DENGFEEHFKC 98 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~-C~~~~p~l~~~~~~~~~~-~~~~~vv~v~~d~---~~~~~~~~~~~ 98 (390)
.+.|.+.+|+ +++++++||++||+||++||++ |..++|.|.++++++++. +.+++|++|++|. +.+.+++|+++
T Consensus 23 ~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~ 102 (200)
T 2b7k_A 23 PFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSD 102 (200)
T ss_dssp CCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTT
T ss_pred CEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHH
Confidence 4569999999 9999999999999999999997 999999999999999754 3349999999995 56778899987
Q ss_pred CC--CcceecChhHHHHHHHhcCcC-CC---------------CeEEEEcCCCcccccc
Q 016404 99 MP--WLAVPFDETLHKKLRIRYRVD-RI---------------PSLIPLASDGTLIEED 139 (390)
Q Consensus 99 ~~--~~~~~~~~~~~~~l~~~~~v~-~~---------------P~~~~~d~~G~i~~~~ 139 (390)
++ |..++...+....+++.||+. .. |+++++|++|+++...
T Consensus 103 ~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~ 161 (200)
T 2b7k_A 103 FHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDAL 161 (200)
T ss_dssp SCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEE
T ss_pred cCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEe
Confidence 65 555555667778899999987 34 3889999999998653
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-17 Score=139.05 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=80.2
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-------CChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~ 96 (390)
.++|.+.+|+ +++++++||++||+||++||++|+ ++|.|.++++++++.+ ++|++|++| .+.+.+++|+
T Consensus 14 ~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~d~~~~~~~~~ 90 (171)
T 3cmi_A 14 KLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEG--FTIIGFPCNQFGHQEPGSDEEIAQFC 90 (171)
T ss_dssp GCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGT--EEEEEEEECSCC--------------
T ss_pred eeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCC--eEEEEEECcccCCCCCCCHHHHHHHH
Confidence 3569999999 999999999999999999999999 9999999999999876 999999986 3455678888
Q ss_pred -HhCCCcceecCh--hH--------HHH-HHHhcCcCCCC------eEEEEcCCCcccccc
Q 016404 97 -KCMPWLAVPFDE--TL--------HKK-LRIRYRVDRIP------SLIPLASDGTLIEED 139 (390)
Q Consensus 97 -~~~~~~~~~~~~--~~--------~~~-l~~~~~v~~~P------~~~~~d~~G~i~~~~ 139 (390)
++++ +.+|+.. +. ... ..+.|++.++| +++++|++|+++.+.
T Consensus 91 ~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~ 150 (171)
T 3cmi_A 91 QLNYG-VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERY 150 (171)
T ss_dssp ----C-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEE
T ss_pred HhccC-CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEe
Confidence 6554 2344321 11 111 12468999999 999999999998653
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-18 Score=143.70 Aligned_cols=112 Identities=21% Similarity=0.308 Sum_probs=96.8
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHH-HHHHHh-hCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ-LYDTLR-TRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~-~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
...|.+.+|+ +++++++||+++|+||++||++|+.++|.|.+ ++++++ +.+ +.++.|++|.+.+.+++|.+++++
T Consensus 15 ~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~ 92 (159)
T 2ls5_A 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNAD--FALIGIDRDEPLEKVLAFAKSTGV 92 (159)
Confidence 3458899999 99999999999999999999999999999998 999887 444 889999998777778888887773
Q ss_pred cceecChhHHHHHHHhcC--cCCCCeEEEEcCCCcccccc
Q 016404 102 LAVPFDETLHKKLRIRYR--VDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~--v~~~P~~~~~d~~G~i~~~~ 139 (390)
.+|+..+....+.+.|+ +.++|+++++|++|+++.+.
T Consensus 93 -~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~ 131 (159)
T 2ls5_A 93 -TYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLT 131 (159)
Confidence 66776677788999999 56699999999999998654
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=136.62 Aligned_cols=112 Identities=20% Similarity=0.119 Sum_probs=86.7
Q ss_pred cceeecCC-Cc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHH
Q 016404 25 VEFLLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH 95 (390)
Q Consensus 25 ~~~l~~~~-g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 95 (390)
.++|.+.+ |+ +++++++||+|||+|||+||++|+.++|.|+++++++++.+ ++|++|++|. +.+..++|
T Consensus 28 ~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g--~~vv~v~~d~~~~~e~d~~~~i~~f 105 (208)
T 2f8a_A 28 AFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKNEEILNS 105 (208)
T ss_dssp GCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCHHHHHHH
T ss_pred ceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCC--eEEEEEECCcccccCCCCHHHHHHH
Confidence 35688999 99 99999999999999999999999999999999999999877 9999999972 34678888
Q ss_pred HH------hCCCcceecCh--h--------HHHHHHHhc-------------------------CcCCCCeEEEEcCCCc
Q 016404 96 FK------CMPWLAVPFDE--T--------LHKKLRIRY-------------------------RVDRIPSLIPLASDGT 134 (390)
Q Consensus 96 ~~------~~~~~~~~~~~--~--------~~~~l~~~~-------------------------~v~~~P~~~~~d~~G~ 134 (390)
++ ++. +.+|... + ....+...+ ++...|+.+|+|++|+
T Consensus 106 ~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~ 184 (208)
T 2f8a_A 106 LKYVRPGGGFE-PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGV 184 (208)
T ss_dssp HHHTSSCTTCC-CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSC
T ss_pred HHhcccccccc-cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCc
Confidence 87 444 3344321 1 111222222 2566799999999999
Q ss_pred ccccc
Q 016404 135 LIEED 139 (390)
Q Consensus 135 i~~~~ 139 (390)
++.+.
T Consensus 185 i~~~~ 189 (208)
T 2f8a_A 185 PLRRY 189 (208)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98654
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=137.83 Aligned_cols=119 Identities=18% Similarity=0.317 Sum_probs=100.5
Q ss_pred HhhccCCceE----E-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC--
Q 016404 178 LLAIEGRDYV----L-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-- 249 (390)
Q Consensus 178 l~g~~~p~f~----l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~-- 249 (390)
.+|.++|+|+ + +.+|++++|++++||+|||+|| +.||+.|..++..|++++++|++ .+++|++||.|..
T Consensus 27 ~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~---~g~~vigiS~Ds~~s 103 (219)
T 3tue_A 27 KINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNE---LNCEVLACSIDSEYA 103 (219)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHT---TTEEEEEEESSCHHH
T ss_pred ccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhcc---CCcEEEEeeCCchhh
Confidence 4799999998 4 6788899999999999999999 89999999999999999999987 8999999999973
Q ss_pred HHHHHHhhh---cCCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016404 250 HKEFDLNHS---IMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 250 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
...|.+... ....+.+|+..|.+..+++.||+- ....+||||++|+|+..
T Consensus 104 h~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~ 162 (219)
T 3tue_A 104 HLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQI 162 (219)
T ss_dssp HHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEE
Confidence 345543322 222467788889999999999983 34689999999999876
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-17 Score=142.17 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=96.0
Q ss_pred cceeecC--CC--c-cccCcc-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHH
Q 016404 25 VEFLLSR--QG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK 97 (390)
Q Consensus 25 ~~~l~~~--~g--~-~~l~~~-~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 97 (390)
.++|.+. +| + ++|+++ +||++||+|| ++||++|+.++|.|.+++++|++.+ ++|++|++| +.+..++|++
T Consensus 33 ~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~--v~vv~Is~D-~~~~~~~~~~ 109 (221)
T 2c0d_A 33 NFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN--VELLGISVD-SVYSHLAWKN 109 (221)
T ss_dssp CCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT--EEEEEEESS-CHHHHHHHHH
T ss_pred CeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHHHHHH
Confidence 3458888 89 8 999999 9999999999 9999999999999999999998776 999999997 4556778888
Q ss_pred hCC------CcceecChhHHHHHHHhcCc-----CCCCeEEEEcCCCccccccc
Q 016404 98 CMP------WLAVPFDETLHKKLRIRYRV-----DRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 98 ~~~------~~~~~~~~~~~~~l~~~~~v-----~~~P~~~~~d~~G~i~~~~~ 140 (390)
++. .+.+|+..+....+++.|++ ..+|+++|+|++|+|++...
T Consensus 110 ~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~ 163 (221)
T 2c0d_A 110 MPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTV 163 (221)
T ss_dssp SCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEE
T ss_pred HhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEEe
Confidence 761 34567655666789999999 47999999999999997653
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-17 Score=135.24 Aligned_cols=112 Identities=17% Similarity=0.275 Sum_probs=87.9
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
.+.|.+.+|+ +++++++||++||+||++||++|+.++|.|+++++++++++ +++++|++|. +.+.+++|+
T Consensus 14 ~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~ 91 (170)
T 2p5q_A 14 DFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQG--LEILAFPCNQFGEEEPGTNDQITDFV 91 (170)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCCSCHHHHHHHH
T ss_pred ceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCC--EEEEEEECCCCCCCCCCCHHHHHHHH
Confidence 4569999999 99999999999999999999999999999999999998876 9999999973 566788888
Q ss_pred H-hCCCcceecC--hhHH----HHHH-----HhcCc--CCCC---eEEEEcCCCcccccc
Q 016404 97 K-CMPWLAVPFD--ETLH----KKLR-----IRYRV--DRIP---SLIPLASDGTLIEED 139 (390)
Q Consensus 97 ~-~~~~~~~~~~--~~~~----~~l~-----~~~~v--~~~P---~~~~~d~~G~i~~~~ 139 (390)
+ +++ ..+|.. .+.. ..+. ..+++ .++| +++++|++|+++.+.
T Consensus 92 ~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~ 150 (170)
T 2p5q_A 92 CTRFK-SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRY 150 (170)
T ss_dssp HHHTC-CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEE
T ss_pred HHhcC-CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEee
Confidence 8 544 223332 1111 1111 23466 7788 999999999998654
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.2e-17 Score=150.96 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=96.0
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC-----CChhHHHHHHHhCCC
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHFKCMPW 101 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~ 101 (390)
|.+.+|+ +++++++||++||+||++||++|+.++|.|.++++++++.+ ++|++|++| .+.+.+++|+++++
T Consensus 67 L~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~--v~vi~Vs~d~~~~~d~~~~~~~~~~~~~- 143 (352)
T 2hyx_A 67 LNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAFEKVPGNVAKGAANLG- 143 (352)
T ss_dssp ESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSGGGGCHHHHHHHHHHHT-
T ss_pred cCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCC--eEEEEEECCcccccCCHHHHHHHHHHcC-
Confidence 6788999 99999999999999999999999999999999999998866 999999986 35678899999776
Q ss_pred cceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+.+|+..+....+++.|++.++|+++|+|++|+++.+.
T Consensus 144 l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~ 181 (352)
T 2hyx_A 144 ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIK 181 (352)
T ss_dssp CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEE
T ss_pred CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEE
Confidence 34666556667899999999999999999999998653
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=125.98 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=82.3
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
+.+|........+||+++|+||++||++|+.+.|.|.+++++++ .++.++.|+.|.+.
T Consensus 13 ~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~----~~v~~~~v~~~~d~------------------ 70 (126)
T 2l57_A 13 SINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE----GKFNIYYARLEEEK------------------ 70 (126)
T ss_dssp CCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS----SSCEEEEEETTSSH------------------
T ss_pred ccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc----CCeEEEEEeCCCCc------------------
Confidence 34443333555678999999999999999999999999999986 56889999844322
Q ss_pred chHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCCC
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDAL 334 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~ 334 (390)
+..+++.|+|.++|+++++|++|+++.+ ..|... .++|.+.+++.....
T Consensus 71 ---~~~~~~~~~v~~~Pt~~~~~~~G~~~~~-------~~G~~~-------~~~l~~~l~~~~~~~ 119 (126)
T 2l57_A 71 ---NIDLAYKYDANIVPTTVFLDKEGNKFYV-------HQGLMR-------KNNIETILNSLGVKE 119 (126)
T ss_dssp ---HHHHHHHTTCCSSSEEEEECTTCCEEEE-------EESCCC-------HHHHHHHHHHHCCCC
T ss_pred ---hHHHHHHcCCcceeEEEEECCCCCEEEE-------ecCCCC-------HHHHHHHHHHHhccc
Confidence 5789999999999999999999999876 345443 556666666655433
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-18 Score=142.15 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=97.0
Q ss_pred cceeecCCCc-cccCcc--CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEFLLSRQGK-VPLSSC--GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~--~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.++|.+.+|+ ++|+++ +||+++|+|| ++|||+|..++|.|.+++++|++.+ +++++|+.| +.+..++|.+++.
T Consensus 13 dF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~--v~vv~is~d-~~~~~~~~~~~~~ 89 (164)
T 4gqc_A 13 DFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCLKKFKDENR 89 (164)
T ss_dssp CCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS--SEEEEEESS-CHHHHHHHHHHTT
T ss_pred CcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC--ceEEEecCC-CHHHHHHHHHhcC
Confidence 3459999999 999998 8999999998 9999999999999999999999887 899999987 5667888988877
Q ss_pred CcceecChhHHHHHHHhcCcC----------CCCeEEEEcCCCccccccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVD----------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~----------~~P~~~~~d~~G~i~~~~~ 140 (390)
+.+|+..|...++++.||+. ..|+++++|++|+|++...
T Consensus 90 -~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~ 138 (164)
T 4gqc_A 90 -LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWV 138 (164)
T ss_dssp -CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEE
T ss_pred -cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEE
Confidence 46777667778999999984 4789999999999987653
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=132.33 Aligned_cols=114 Identities=20% Similarity=0.172 Sum_probs=94.4
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC--ChhHHHHHHHhCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH--DENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~-~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~--~~~~~~~~~~~~~ 100 (390)
.++|.+.+|+ +++++++||+++|+||++||+ +|..+++.|.++++++++.+.++++++|++|. +.+.+++|+++++
T Consensus 10 ~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~ 89 (170)
T 3me7_A 10 DITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYG 89 (170)
T ss_dssp TCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTT
T ss_pred CeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcC
Confidence 4569999999 999999999999999999997 69999999999999998655569999999983 5567889998776
Q ss_pred C--cc----eecChhHHHHHHHhcCc---------CCCCeEEEEcCCCccccc
Q 016404 101 W--LA----VPFDETLHKKLRIRYRV---------DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 101 ~--~~----~~~~~~~~~~l~~~~~v---------~~~P~~~~~d~~G~i~~~ 138 (390)
. .. +..+.+....+++.||+ ...|+++++|++|+++..
T Consensus 90 ~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~ 142 (170)
T 3me7_A 90 IDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY 142 (170)
T ss_dssp CCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred CCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE
Confidence 2 11 22245677889998774 467999999999999854
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-17 Score=136.99 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=86.5
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
.++|.+.+|+ +++++++||++||+||++||++|+.++|.|.+++++|++++ ++|++|++|. +.+.+++|+
T Consensus 20 ~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~~~d~~~~~~~~~ 97 (180)
T 3kij_A 20 AFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSH--FSVLAFPCNQFGESEPRPSKEVESFA 97 (180)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTS--EEEEEEECCCSTTCCCSCHHHHHHHH
T ss_pred ceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCC--eEEEEEECCccccCCCCCHHHHHHHH
Confidence 4669999999 99999999999999999999999999999999999999877 9999999875 677888998
Q ss_pred Hh-CCCcceec-----ChhH-HHHHHHhc--CcCCCCe----EEEEcCCCcccccc
Q 016404 97 KC-MPWLAVPF-----DETL-HKKLRIRY--RVDRIPS----LIPLASDGTLIEED 139 (390)
Q Consensus 97 ~~-~~~~~~~~-----~~~~-~~~l~~~~--~v~~~P~----~~~~d~~G~i~~~~ 139 (390)
++ .+ +.+|. ..+. ...+...+ ...++|+ .+++|++|+++.+.
T Consensus 98 ~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~ 152 (180)
T 3kij_A 98 RKNYG-VTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW 152 (180)
T ss_dssp HHHHC-CCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEE
T ss_pred HHhcC-CCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEE
Confidence 87 54 22222 0110 01111111 1246788 99999999998654
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.8e-17 Score=138.07 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=96.9
Q ss_pred cceeecC--CC--c-cccCcc-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHH
Q 016404 25 VEFLLSR--QG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK 97 (390)
Q Consensus 25 ~~~l~~~--~g--~-~~l~~~-~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 97 (390)
.+.|.+. +| + ++++++ +||+++|+|| ++||++|+.++|.|.+++++|++.+ +++++|++| +.+..++|.+
T Consensus 8 ~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~Is~d-~~~~~~~~~~ 84 (192)
T 2h01_A 8 SFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVD-SKFTHLAWKK 84 (192)
T ss_dssp CCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESS-CHHHHHHHHT
T ss_pred CcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEEeC-CHHHHHHHHH
Confidence 3457787 89 8 999999 9999999999 9999999999999999999998766 999999998 4567788888
Q ss_pred hCC------CcceecChhHHHHHHHhcCcC-----CCCeEEEEcCCCccccccc
Q 016404 98 CMP------WLAVPFDETLHKKLRIRYRVD-----RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 98 ~~~------~~~~~~~~~~~~~l~~~~~v~-----~~P~~~~~d~~G~i~~~~~ 140 (390)
.+. .+.+|+..+....+++.|++. .+|+++++|++|++++...
T Consensus 85 ~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~ 138 (192)
T 2h01_A 85 TPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLV 138 (192)
T ss_dssp SCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEE
T ss_pred hHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEe
Confidence 762 355666556667899999999 8999999999999987643
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-17 Score=136.62 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=95.3
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~-C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ +++++++||+++|+||++| |++|+.++|.|.++++++ .+ +++++|++| +.+..++|++++++.
T Consensus 26 ~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~--~~vv~is~d-~~~~~~~~~~~~~~~ 100 (167)
T 2jsy_A 26 DFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GD--VNVYTISAD-LPFAQARWCGANGID 100 (167)
T ss_dssp CCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SS--CEEEEEECS-SGGGTSCCGGGSSCT
T ss_pred ceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CC--CEEEEEECC-CHHHHHHHHHhcCCC
Confidence 4568999999 9999999999999999999 999999999999999999 33 899999998 445677888887754
Q ss_pred ceecChh-HHHHHHHhcCcCC------CCeEEEEcCCCccccccc
Q 016404 103 AVPFDET-LHKKLRIRYRVDR------IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~-~~~~l~~~~~v~~------~P~~~~~d~~G~i~~~~~ 140 (390)
.+|+..+ ....+++.|++.. +|+++++|++|+++++..
T Consensus 101 ~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~ 145 (167)
T 2jsy_A 101 KVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEY 145 (167)
T ss_dssp TEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEE
T ss_pred CceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEe
Confidence 6777555 5678999999986 499999999999987654
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-17 Score=141.47 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=93.1
Q ss_pred cceee---cCCCc-cccCccCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC
Q 016404 25 VEFLL---SRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 25 ~~~l~---~~~g~-~~l~~~~gk~vll~F~a-~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 99 (390)
.++|. +.+|+ ++|++++||++||+||+ +||++|+.++|.|++++++|++.+ ++|++|++|. .+...+|.+.+
T Consensus 48 ~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~--v~vv~Is~D~-~~~~~~~~~~~ 124 (222)
T 3ztl_A 48 EFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN--CQVIACSTDS-QYSHLAWDNLD 124 (222)
T ss_dssp CCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHHHHHHHSC
T ss_pred CeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHHHHHHHh
Confidence 34476 44568 99999999999999996 999999999999999999999876 9999999985 44456666654
Q ss_pred ------CCcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccccc
Q 016404 100 ------PWLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 100 ------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~~ 140 (390)
..+.+|+..+....+++.|++. .+|+++|+|++|++++...
T Consensus 125 ~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~ 177 (222)
T 3ztl_A 125 RKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITI 177 (222)
T ss_dssp GGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEE
T ss_pred hhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEe
Confidence 1356666555568899999998 8999999999999987643
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-17 Score=138.95 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=88.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
.++|.+.+|+ +++++++||++||+||++||++|+.++|.|+++++++++++ +++++|++|. +.+.+++|+
T Consensus 31 ~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~~~~~~~~~~ 108 (181)
T 2p31_A 31 DFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHH--FNVLAFPCNQFGQQEPDSNKEIESFA 108 (181)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCHHHHHHHH
T ss_pred ceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCC--EEEEEEECcCCCCCCCCCHHHHHHHH
Confidence 4569999999 99999999999999999999999999999999999999876 9999999984 566788888
Q ss_pred Hh-CCCcceecCh--hHHHHH---HHhcCcCCCC-------eEEEEcCCCcccccc
Q 016404 97 KC-MPWLAVPFDE--TLHKKL---RIRYRVDRIP-------SLIPLASDGTLIEED 139 (390)
Q Consensus 97 ~~-~~~~~~~~~~--~~~~~l---~~~~~v~~~P-------~~~~~d~~G~i~~~~ 139 (390)
++ ++ +.+|... +..... .-.|++.++| +++++|++|+++.+.
T Consensus 109 ~~~~~-~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~ 163 (181)
T 2p31_A 109 RRTYS-VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAW 163 (181)
T ss_dssp HHHHC-CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEE
T ss_pred HhhcC-CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEe
Confidence 86 54 2344321 111111 1134566778 999999999998653
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=135.09 Aligned_cols=112 Identities=15% Similarity=0.223 Sum_probs=89.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
.+.|.+.+|+ +++++++||++||+||++||++|+.++|.|.++++++++++ ++|++|++|. +.+.+++|+
T Consensus 30 ~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~~~~~~~~~~~~~ 107 (190)
T 2vup_A 30 DFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPCNQFGGQEPGNEEEIKEFV 107 (190)
T ss_dssp GSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--CEEEEEECCCSTTCCCSCHHHHHHHH
T ss_pred CeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCC--eEEEEEEcCccCCCCCCCHHHHHHHH
Confidence 3558999999 99999999999999999999999999999999999999876 9999999983 566788888
Q ss_pred -HhCCCcceecCh--hH--------HHHH-HHhcCcCCCC------eEEEEcCCCcccccc
Q 016404 97 -KCMPWLAVPFDE--TL--------HKKL-RIRYRVDRIP------SLIPLASDGTLIEED 139 (390)
Q Consensus 97 -~~~~~~~~~~~~--~~--------~~~l-~~~~~v~~~P------~~~~~d~~G~i~~~~ 139 (390)
+++. +.+|... +. ...+ ...|++.++| +++|+|++|+++.+.
T Consensus 108 ~~~~~-~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~ 167 (190)
T 2vup_A 108 CTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERF 167 (190)
T ss_dssp HHHHC-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEE
T ss_pred HHhcC-CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEE
Confidence 6544 2233311 11 1111 2347899999 999999999998653
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=137.21 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=95.1
Q ss_pred cceeecC-CC--c-cccCccCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC
Q 016404 25 VEFLLSR-QG--K-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 25 ~~~l~~~-~g--~-~~l~~~~gk~vll~F~a-~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 99 (390)
.++|.+. +| + ++|++++||+++|+||+ +||++|+.++|.|.++++++++.+ ++|++|++|. .+..++|++++
T Consensus 9 ~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~--v~vv~Is~d~-~~~~~~~~~~~ 85 (186)
T 1n8j_A 9 PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDT-HFTHKAWHSSS 85 (186)
T ss_dssp CCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHHHHHHHHC
T ss_pred CcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHHHHHHHc
Confidence 3458888 58 8 99999999999999995 999999999999999999998876 9999999984 55678888887
Q ss_pred C---CcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccccc
Q 016404 100 P---WLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 100 ~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~~ 140 (390)
+ -+.+|+..+....+++.|++. .+|+++++|++|++++...
T Consensus 86 ~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~ 135 (186)
T 1n8j_A 86 ETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEV 135 (186)
T ss_dssp TTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred CcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEe
Confidence 2 245566556667899999987 3799999999999987653
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=137.47 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=90.4
Q ss_pred C--c-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC---Cccee
Q 016404 33 G--K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP---WLAVP 105 (390)
Q Consensus 33 g--~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~---~~~~~ 105 (390)
| + +++++++||+++|+|| ++||++|+.++|.|.++++++++.+ +++++|++|. .+..++|.+++. -+.+|
T Consensus 33 G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d~-~~~~~~~~~~~~~~~~~~~~ 109 (195)
T 2bmx_A 33 DYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQILGVSIDS-EFAHFQWRAQHNDLKTLPFP 109 (195)
T ss_dssp GGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHHHHHHHHCTTGGGCCSC
T ss_pred CCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHHHHHHHhccccCCcee
Confidence 7 8 9999999999999999 9999999999999999999998766 9999999985 567888888772 23455
Q ss_pred cChhHHHHHHHhcCcC-----CCCeEEEEcCCCccccccc
Q 016404 106 FDETLHKKLRIRYRVD-----RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~-----~~P~~~~~d~~G~i~~~~~ 140 (390)
+..+....+++.|++. ++|+++++|++|+++.+..
T Consensus 110 ~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~ 149 (195)
T 2bmx_A 110 MLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSA 149 (195)
T ss_dssp EEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEE
T ss_pred EEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEEe
Confidence 5445567899999999 9999999999999987643
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=139.82 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=96.8
Q ss_pred cceeecC--CC--c-cccCcc-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHH
Q 016404 25 VEFLLSR--QG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK 97 (390)
Q Consensus 25 ~~~l~~~--~g--~-~~l~~~-~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 97 (390)
.+.|.+. +| + ++|+++ +||++||+|| ++||++|+.++|.|.+++++|++.+ ++|++|++| +.+..++|++
T Consensus 29 ~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D-~~~~~~~~~~ 105 (213)
T 2i81_A 29 FFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERN--VELLGCSVD-SKYTHLAWKK 105 (213)
T ss_dssp CCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTT--EEEEEEESS-CHHHHHHHHS
T ss_pred CeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHHHHHH
Confidence 3458888 89 8 999999 9999999999 9999999999999999999998766 999999998 5566788887
Q ss_pred hCC------CcceecChhHHHHHHHhcCcC-----CCCeEEEEcCCCcccccc
Q 016404 98 CMP------WLAVPFDETLHKKLRIRYRVD-----RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 98 ~~~------~~~~~~~~~~~~~l~~~~~v~-----~~P~~~~~d~~G~i~~~~ 139 (390)
.+. .+.+|+..+....+++.|++. .+|+++++|++|++++..
T Consensus 106 ~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~ 158 (213)
T 2i81_A 106 TPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLL 158 (213)
T ss_dssp SCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEE
Confidence 661 356677566668999999999 899999999999998764
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=133.81 Aligned_cols=111 Identities=18% Similarity=0.089 Sum_probs=93.3
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ +++++++||+++|+|| ++||++|..++|.|+++++++ .+ ++|++|+.| +.+..++|++++++.
T Consensus 25 ~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~--v~vv~Is~d-~~~~~~~~~~~~~~~ 99 (165)
T 1q98_A 25 NFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SN--TIVLCISAD-LPFAQARFCGAEGIE 99 (165)
T ss_dssp CCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TT--EEEEEEESS-CHHHHTTCTTTTTCT
T ss_pred CeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--CEEEEEeCC-CHHHHHHHHHHcCCC
Confidence 4569999999 9999999999999999 899999999999999999999 34 999999997 455677888877642
Q ss_pred ceecChhH-HHHHHHhcCcCC---------CCeEEEEcCCCccccccc
Q 016404 103 AVPFDETL-HKKLRIRYRVDR---------IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~~-~~~l~~~~~v~~---------~P~~~~~d~~G~i~~~~~ 140 (390)
.+|+..+. ...+++.|++.. .|+.+++|++|++++...
T Consensus 100 ~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~ 147 (165)
T 1q98_A 100 NAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL 147 (165)
T ss_dssp TEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred ceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEe
Confidence 56764454 578999999853 599999999999987654
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=133.40 Aligned_cols=110 Identities=12% Similarity=0.124 Sum_probs=94.7
Q ss_pred ceee-cCCCc-cccCcc-CCCEEEEEEe-cCCChhhhh-hHHHHHHHHHHHhhCCCcE-EEEEEecCCChhHHHHHHHhC
Q 016404 26 EFLL-SRQGK-VPLSSC-GGKTICLFFS-ANWCRPCKT-FTPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 26 ~~l~-~~~g~-~~l~~~-~gk~vll~F~-a~~C~~C~~-~~p~l~~~~~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~ 99 (390)
+.|. +.+|+ ++|+++ +||+++|+|| ++|||+|.. ++|.|.++++++++.+ + +|++|+.| +.+..++|++++
T Consensus 12 f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d-~~~~~~~~~~~~ 88 (167)
T 2wfc_A 12 VTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG--VDIIACMAVN-DSFVMDAWGKAH 88 (167)
T ss_dssp CEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT--CCEEEEEESS-CHHHHHHHHHHT
T ss_pred cEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCC-CHHHHHHHHHhc
Confidence 4587 99999 999998 9999999886 999999999 9999999999999877 8 99999998 566788999988
Q ss_pred CCc-ceecChhHHHHHHHhcCcCCC-----------CeEEEEcCCCcccccc
Q 016404 100 PWL-AVPFDETLHKKLRIRYRVDRI-----------PSLIPLASDGTLIEED 139 (390)
Q Consensus 100 ~~~-~~~~~~~~~~~l~~~~~v~~~-----------P~~~~~d~~G~i~~~~ 139 (390)
+.. .+|+..|...++++.||+... |+.+++ ++|+|++..
T Consensus 89 ~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~ 139 (167)
T 2wfc_A 89 GADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVN 139 (167)
T ss_dssp TCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEE
T ss_pred CCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEE
Confidence 742 277766667899999998754 999999 899998764
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=132.76 Aligned_cols=111 Identities=14% Similarity=0.052 Sum_probs=93.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a-~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ +++++++||+++|+||+ +||++|..++|.|+++++++ .+ +++++|+.|. .+..++|+++++..
T Consensus 24 ~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~--v~vv~is~d~-~~~~~~~~~~~~~~ 98 (163)
T 1psq_A 24 DFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DN--TVVLTVSMDL-PFAQKRWCGAEGLD 98 (163)
T ss_dssp CCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESSC-HHHHHHHHHHHTCT
T ss_pred CEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--cEEEEEECCC-HHHHHHHHHhcCCC
Confidence 4569999999 99999999999999995 99999999999999999998 34 9999999984 55678888876632
Q ss_pred ceecChh-HHHHHHHhcCcC----C--CCeEEEEcCCCccccccc
Q 016404 103 AVPFDET-LHKKLRIRYRVD----R--IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~-~~~~l~~~~~v~----~--~P~~~~~d~~G~i~~~~~ 140 (390)
.+|+..+ ....+++.|++. + .|+++++|++|++++...
T Consensus 99 ~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~ 143 (163)
T 1psq_A 99 NAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEY 143 (163)
T ss_dssp TSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEE
T ss_pred CcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEe
Confidence 5666445 567899999987 3 499999999999987654
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-16 Score=125.82 Aligned_cols=84 Identities=24% Similarity=0.417 Sum_probs=75.4
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
+.+|....++.++|++++|+||++||++|+.+.|.|.+++++|+ .++.++.|.+|..
T Consensus 38 ~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~------------------- 94 (141)
T 3hxs_A 38 DYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA----GKIYIYKVNVDKE------------------- 94 (141)
T ss_dssp CCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-------------------
T ss_pred ccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CceEEEEEECCCC-------------------
Confidence 67788899999999999999999999999999999999999987 4688888888753
Q ss_pred chHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..+++.|+|.++|+++++|++|+++..
T Consensus 95 ----~~~~~~~~v~~~Pt~~~~~~~g~~~~~ 121 (141)
T 3hxs_A 95 ----PELARDFGIQSIPTIWFVPMKGEPQVN 121 (141)
T ss_dssp ----HHHHHHTTCCSSSEEEEECSSSCCEEE
T ss_pred ----HHHHHHcCCCCcCEEEEEeCCCCEEEE
Confidence 678999999999999999999998733
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=133.51 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=85.5
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHH-
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH- 95 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~- 95 (390)
.++|.+.+|+ +++++++||++||+||++||++|+.++|.|+++++++++++ +++++|++|. +.+.+++|
T Consensus 13 ~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~~ 90 (169)
T 2v1m_A 13 EFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKG--LRILAFPCNQFGGQEPWAEAEIKKFV 90 (169)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCHHHHHHHH
T ss_pred cceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCC--eEEEEEECCccCCCCCCCHHHHHHHH
Confidence 3569999999 99999999999999999999999999999999999999876 9999999973 45677888
Q ss_pred HHhCCCcceecCh--hHH--------HHHH-HhcC-----cCCCCeEEEEcCCCcccccc
Q 016404 96 FKCMPWLAVPFDE--TLH--------KKLR-IRYR-----VDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 96 ~~~~~~~~~~~~~--~~~--------~~l~-~~~~-----v~~~P~~~~~d~~G~i~~~~ 139 (390)
.++++ +.+|... +.. ..+. ..++ +.++|+++++|++|+++.+.
T Consensus 91 ~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~ 149 (169)
T 2v1m_A 91 TEKYG-VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRY 149 (169)
T ss_dssp HHHHC-CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEE
T ss_pred HHhcC-CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEc
Confidence 36544 2233211 111 1111 1235 55679999999999998653
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=134.70 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=87.8
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
.++|.+.+|+ +++++++||++||+||++||++|+.++|.|+++++++++++ ++|++|++|. +.+.+++|+
T Consensus 29 ~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~~~~~e~~~~~~~~~~~ 106 (183)
T 2obi_A 29 EFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPGSNEEIKEFA 106 (183)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCHHHHHHHH
T ss_pred ceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCC--eEEEEEECCCCCCCCCCCHHHHHHHH
Confidence 4569999999 99999999999999999999999999999999999999876 9999999973 567788999
Q ss_pred HhCCCcceecCh--hHHH----HHHHhc-------C-----cCCCCeEEEEcCCCcccccc
Q 016404 97 KCMPWLAVPFDE--TLHK----KLRIRY-------R-----VDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 97 ~~~~~~~~~~~~--~~~~----~l~~~~-------~-----v~~~P~~~~~d~~G~i~~~~ 139 (390)
++++. .+|... +... .+.+.+ + +..+|+++|+|++|+++.+.
T Consensus 107 ~~~~~-~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~ 166 (183)
T 2obi_A 107 AGYNV-KFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY 166 (183)
T ss_dssp HTTTC-CSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEE
T ss_pred HHcCC-CceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEe
Confidence 87762 344321 1111 122111 4 44579999999999998653
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-16 Score=120.81 Aligned_cols=71 Identities=21% Similarity=0.493 Sum_probs=60.4
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.++|+|+|+|||+||++|+.+.|.+.++++.++ ++.++.|.+|. +.+++++|
T Consensus 18 ~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----~~~~~~vd~d~-----------------------~~~l~~~~ 69 (105)
T 3zzx_A 18 AGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-----DVVFLKVDVDE-----------------------CEDIAQDN 69 (105)
T ss_dssp TTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TEEEEEEETTT-----------------------CHHHHHHT
T ss_pred cCCCEEEEEEECCCCCCccCCCcchhhhhhccC-----CeEEEEEeccc-----------------------CHHHHHHc
Confidence 346899999999999999999999999998885 35666666654 47899999
Q ss_pred cccccceEEEECCCCcEEee
Q 016404 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|+++||++++ ++|+++.+
T Consensus 70 ~V~~~PT~~~~-~~G~~v~~ 88 (105)
T 3zzx_A 70 QIACMPTFLFM-KNGQKLDS 88 (105)
T ss_dssp TCCBSSEEEEE-ETTEEEEE
T ss_pred CCCeecEEEEE-ECCEEEEE
Confidence 99999999998 78888876
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-17 Score=135.41 Aligned_cols=110 Identities=15% Similarity=0.029 Sum_probs=93.9
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ +++++++||+++|+|| ++||++|..++|.|++++++ .+ ++|++|+.| +.+..++|+++++..
T Consensus 28 ~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~--~~vv~is~d-~~~~~~~~~~~~~~~ 101 (166)
T 3p7x_A 28 DFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EE--GIVLTISAD-LPFAQKRWCASAGLD 101 (166)
T ss_dssp CCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TT--SEEEEEESS-CHHHHHHHHHHHTCS
T ss_pred CeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CC--CEEEEEECC-CHHHHHHHHHHcCCC
Confidence 4569999999 9999999999999999 78999999999999999887 33 899999988 566788899887743
Q ss_pred ceecChhH-HHHHHHhcCcCC------CCeEEEEcCCCccccccc
Q 016404 103 AVPFDETL-HKKLRIRYRVDR------IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~~-~~~l~~~~~v~~------~P~~~~~d~~G~i~~~~~ 140 (390)
.+|+..+. ...+++.|++.. +|+++++|++|++++...
T Consensus 102 ~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~ 146 (166)
T 3p7x_A 102 NVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEI 146 (166)
T ss_dssp SCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEE
T ss_pred ceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEE
Confidence 56775555 568999999985 899999999999987654
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=132.68 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=90.8
Q ss_pred cceeecC--CCc-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEFLLSR--QGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~--~g~-~~l~~~-~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.+.|.+. +|+ ++++++ +||+++|+||++||++|+.+.|.|.+++++ + +++++|++|.+.+.+++|+++++
T Consensus 30 ~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~v~~~~~~~~~~~~~~~~~ 103 (168)
T 2b1k_A 30 KFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----G--IRVVGMNYKDDRQKAISWLKELG 103 (168)
T ss_dssp CCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CCEEEEEESCCHHHHHHHHHHHC
T ss_pred CeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----C--CEEEEEECCCChHHHHHHHHHcC
Confidence 3458888 899 998885 899999999999999999999999998875 3 78999999999889999999776
Q ss_pred Cccee-cChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 101 WLAVP-FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 101 ~~~~~-~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+ .++ ...+....+++.|++.++|+++++|++|+++.+.
T Consensus 104 ~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 142 (168)
T 2b1k_A 104 N-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 142 (168)
T ss_dssp C-CCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEE
T ss_pred C-CCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEE
Confidence 3 233 2344557899999999999999999999988543
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=138.71 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=92.9
Q ss_pred ceeec---CCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC-
Q 016404 26 EFLLS---RQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM- 99 (390)
Q Consensus 26 ~~l~~---~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~- 99 (390)
+.|.+ .+|+ ++|++++||++||+|| ++||++|..++|.|.+++++|++.+ ++|++|++| +.+..++|++++
T Consensus 28 f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~--v~vv~Is~D-~~~~~~~~~~~~~ 104 (211)
T 2pn8_A 28 WEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVD-SQFTHLAWINTPR 104 (211)
T ss_dssp CEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESS-CHHHHHHHHTSCG
T ss_pred eEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECC-CHHHHHHHHHHhh
Confidence 34655 3567 9999999999999999 9999999999999999999998766 999999997 455678888766
Q ss_pred ---C--CcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 100 ---P--WLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 100 ---~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
+ .+.+|+..+....+++.|++. .+|+++|+|++|++++..
T Consensus 105 ~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~ 155 (211)
T 2pn8_A 105 RQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT 155 (211)
T ss_dssp GGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred hccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEE
Confidence 1 355666555567899999995 699999999999998765
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-16 Score=152.15 Aligned_cols=83 Identities=14% Similarity=0.308 Sum_probs=66.9
Q ss_pred eecCCCc-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 28 LLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 28 l~~~~g~-~~l~~~-~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
+..++++ +..... .+++++|+|||+||++|+.++|.|+++++++++.+..+.++.|++|.+.+
T Consensus 14 V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~--------------- 78 (519)
T 3t58_A 14 LTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETN--------------- 78 (519)
T ss_dssp SEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGG---------------
T ss_pred cEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcccc---------------
Confidence 4445555 443222 46999999999999999999999999999998743348888888775443
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcC
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLAS 131 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~ 131 (390)
..++++|+|.++|+++++++
T Consensus 79 ------~~l~~~~~V~~~PTl~~f~~ 98 (519)
T 3t58_A 79 ------SAVCREFNIAGFPTVRFFQA 98 (519)
T ss_dssp ------HHHHHHTTCCSBSEEEEECT
T ss_pred ------HHHHHHcCCcccCEEEEEcC
Confidence 79999999999999999985
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-16 Score=130.80 Aligned_cols=108 Identities=17% Similarity=0.312 Sum_probs=92.4
Q ss_pred cceeecCCC--------c-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHH
Q 016404 25 VEFLLSRQG--------K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH 95 (390)
Q Consensus 25 ~~~l~~~~g--------~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 95 (390)
.+.+.+.+| + +++++++||+++|+||++||++|+.+.|.|.+++++ . ++.++.|++|.+.+.+++|
T Consensus 16 ~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~---~v~~v~v~~~~~~~~~~~~ 90 (156)
T 1kng_A 16 QTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD--K---RFQLVGINYKDAADNARRF 90 (156)
T ss_dssp CCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC--T---TSEEEEEEESCCHHHHHHH
T ss_pred CceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc--C---CeEEEEEECCCCHHHHHHH
Confidence 345888998 8 999999999999999999999999999999998875 2 3889999999999999999
Q ss_pred HHhCCCccee-cChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 96 FKCMPWLAVP-FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 96 ~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
++++++ .++ +..+....+++.|++.++|+++++|++|+++.+
T Consensus 91 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~ 133 (156)
T 1kng_A 91 LGRYGN-PFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYK 133 (156)
T ss_dssp HHHHCC-CCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred HHHcCC-CCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence 997763 344 344555789999999999999999999998764
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=136.75 Aligned_cols=111 Identities=23% Similarity=0.201 Sum_probs=94.5
Q ss_pred ceeecC--CC--c-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC
Q 016404 26 EFLLSR--QG--K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 26 ~~l~~~--~g--~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 99 (390)
+.|.+. +| + +++++++||++||+|| ++||++|+.++|.|.+++++|++.+ +++++|++|. .+..++|++++
T Consensus 15 f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~Is~D~-~~~~~~~~~~~ 91 (202)
T 1uul_A 15 FNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDS-EYSHLAWTSIE 91 (202)
T ss_dssp CEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHHHHHHHSC
T ss_pred cEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHHHHHHH
Confidence 447666 67 7 9999999999999999 9999999999999999999998766 9999999984 55678888866
Q ss_pred ----C--CcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 100 ----P--WLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 100 ----~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
+ .+.+|+..+....+++.|++. ++|+++++|++|++++..
T Consensus 92 ~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~ 143 (202)
T 1uul_A 92 RKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 143 (202)
T ss_dssp GGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 1 245666555667899999999 999999999999998764
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=134.29 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=86.9
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
.++|.+.+|+ +++++++||++||+||++||++|+.++|.|+++++++++++ +++++|++|. +.+.+++|+
T Consensus 31 ~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~is~d~~~~~~~~~~~~~~~~~ 108 (185)
T 2gs3_A 31 EFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG--LRILAFPCNQFGKQEPGSNEEIKEFA 108 (185)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCTTTTCCCSCHHHHHHHH
T ss_pred CceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCC--eEEEEEECcccCCCCCCCHHHHHHHH
Confidence 4569999999 99999999999999999999999999999999999999876 9999999873 356788888
Q ss_pred HhCCCcceecCh--hHH----HHHHHhc-------C-----cCCCCeEEEEcCCCcccccc
Q 016404 97 KCMPWLAVPFDE--TLH----KKLRIRY-------R-----VDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 97 ~~~~~~~~~~~~--~~~----~~l~~~~-------~-----v~~~P~~~~~d~~G~i~~~~ 139 (390)
++++. .+|... +.. ..+...+ + +..+|+++++|++|+++.+.
T Consensus 109 ~~~~~-~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~ 168 (185)
T 2gs3_A 109 AGYNV-KFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY 168 (185)
T ss_dssp HHTTC-CSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEE
T ss_pred HHcCC-CCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEee
Confidence 87662 344321 111 1122111 4 34479999999999998654
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=129.16 Aligned_cols=95 Identities=18% Similarity=0.346 Sum_probs=76.2
Q ss_pred hhccCCceEE--eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHH
Q 016404 179 LAIEGRDYVL--SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEF 253 (390)
Q Consensus 179 ~g~~~p~f~l--~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~ 253 (390)
.+..+|+|+. +.++....+++.+||++||+||++||++|+.+.|.+ .++++.++ ++.++.|+++...
T Consensus 6 ~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-----~~~~~~vd~~~~~--- 77 (134)
T 2fwh_A 6 QTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-----DTVLLQANVTAND--- 77 (134)
T ss_dssp ----CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-----TSEEEEEECTTCC---
T ss_pred ccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-----CcEEEEEeCCCCc---
Confidence 3566788873 555666677778899999999999999999999998 88888874 3788888876531
Q ss_pred HHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEE
Q 016404 254 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
+....+++.|+|.++|+++++|++|+++
T Consensus 78 ----------------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v 105 (134)
T 2fwh_A 78 ----------------AQDVALLKHLNVLGLPTILFFDGQGQEH 105 (134)
T ss_dssp ----------------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred ----------------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence 2357899999999999999999999997
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-16 Score=130.83 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=93.5
Q ss_pred ecCCC--c-cccCc-cCCCEEEEEEe-cCCChhhh-hhHHHHHHHHHHHhhCCCcEE-EEEEecCCChhHHHHHHHhCCC
Q 016404 29 LSRQG--K-VPLSS-CGGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTLRTRGTELE-VIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 29 ~~~~g--~-~~l~~-~~gk~vll~F~-a~~C~~C~-~~~p~l~~~~~~~~~~~~~~~-vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
.+.+| + ++|++ ++||+++|+|| ++||++|. .++|.|.++++++++.+ ++ |++|+.| +.+..++|.++++.
T Consensus 18 ~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~--v~~vv~Is~d-~~~~~~~~~~~~~~ 94 (162)
T 1tp9_A 18 FDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG--VTEILCISVN-DPFVMKAWAKSYPE 94 (162)
T ss_dssp ECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCCEEEEESS-CHHHHHHHHHTCTT
T ss_pred ecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECC-CHHHHHHHHHhcCC
Confidence 38899 8 99999 89999999999 89999999 99999999999998876 89 9999998 56678899998874
Q ss_pred c-ceecChhHHHHHHHhcCcC------C-----CCeEEEEcCCCcccccc
Q 016404 102 L-AVPFDETLHKKLRIRYRVD------R-----IPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~-~~~~~~~~~~~l~~~~~v~------~-----~P~~~~~d~~G~i~~~~ 139 (390)
. .+|+..|....+++.||+. + .|+.+++| +|++++..
T Consensus 95 ~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~ 143 (162)
T 1tp9_A 95 NKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN 143 (162)
T ss_dssp CSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred CCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEE
Confidence 3 5777666678999999986 3 89999999 99998765
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=136.62 Aligned_cols=111 Identities=22% Similarity=0.143 Sum_probs=95.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ ++|++++||+++|+|| ++||++|..++|.|+++++++ .+ ++|++|+.| +.+..++|+++++.-
T Consensus 60 df~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~--v~vv~Is~D-~~~~~~~~~~~~~~~ 134 (200)
T 3zrd_A 60 DFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--EN--TVVLCISSD-LPFAQSRFCGAEGLS 134 (200)
T ss_dssp CCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TT--EEEEEEESS-CHHHHTTCTTTTTCT
T ss_pred CeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CC--CEEEEEECC-CHHHHHHHHHHcCCC
Confidence 4569999999 9999999999999999 789999999999999999999 34 999999998 556678888877643
Q ss_pred ceecChhH-HHHHHHhcCcC---------CCCeEEEEcCCCccccccc
Q 016404 103 AVPFDETL-HKKLRIRYRVD---------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~~-~~~l~~~~~v~---------~~P~~~~~d~~G~i~~~~~ 140 (390)
.+|+..+. ...+++.|++. ..|+++|+|++|+|++...
T Consensus 135 ~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~ 182 (200)
T 3zrd_A 135 NVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSEL 182 (200)
T ss_dssp TEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred CceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEe
Confidence 67775565 68999999986 3699999999999987654
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=138.62 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=92.5
Q ss_pred cCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC----C--C
Q 016404 30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM----P--W 101 (390)
Q Consensus 30 ~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~----~--~ 101 (390)
+.+|+ +++++++||++||+|| ++||++|+.++|.|.+++++|++.+ ++|++|++|. .+..++|++.+ + .
T Consensus 43 ~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~ 119 (220)
T 1zye_A 43 SGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDS-HFSHLAWINTPRKNGGLGH 119 (220)
T ss_dssp SSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHHHHHHTSCGGGTCCCS
T ss_pred CCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHHHHHHHHHHhCCCcC
Confidence 46788 9999999999999999 9999999999999999999998876 9999999994 55677787765 1 2
Q ss_pred cceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~~ 140 (390)
+.+|+..+....+++.|++. .+|+++|+|++|++++...
T Consensus 120 ~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~ 164 (220)
T 1zye_A 120 MNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSV 164 (220)
T ss_dssp CSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred CceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEe
Confidence 45666556668899999999 9999999999999987653
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-16 Score=123.31 Aligned_cols=89 Identities=19% Similarity=0.420 Sum_probs=74.7
Q ss_pred cCCceEEeCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCC
Q 016404 182 EGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 261 (390)
Q Consensus 182 ~~p~f~l~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 261 (390)
+.|++. ..+++.++....+||+++|+||++||++|+.+.|.|.+++++++ .++.++.|++|..
T Consensus 23 ~~~~~~-~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~----~~v~~~~vd~d~~------------ 85 (128)
T 3ul3_B 23 KVPRLQ-QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG----KRIYLLKVDLDKN------------ 85 (128)
T ss_dssp ---CCC-CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHG----GGEEEEEEEGGGC------------
T ss_pred cCCccc-cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCeEEEEEECCCC------------
Confidence 345544 56667777888899999999999999999999999999999997 4688888887753
Q ss_pred cccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 262 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..++++|+|.++|+++++ ++|+++.+
T Consensus 86 -----------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 111 (128)
T 3ul3_B 86 -----------ESLARKFSVKSLPTIILL-KNKTMLAR 111 (128)
T ss_dssp -----------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----------HHHHHHcCCCCcCEEEEE-ECCEEEEE
Confidence 688999999999999999 78998876
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=132.34 Aligned_cols=111 Identities=17% Similarity=0.154 Sum_probs=84.8
Q ss_pred cceeecCC-Cc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHH
Q 016404 25 VEFLLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH 95 (390)
Q Consensus 25 ~~~l~~~~-g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 95 (390)
.++|.+.+ |+ ++|++++||+|||+|||+||++|+ ++|.|++++++|++.+ ++|++|++|. +.+..++|
T Consensus 37 dF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g--~~Vlgvs~d~f~~~e~~~~~~i~~f 113 (215)
T 2i3y_A 37 DYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYG--LVVLGFPCNQFGKQEPGDNKEILPG 113 (215)
T ss_dssp GCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT--EEEEEEECCCSTTCCCSCHHHHHHH
T ss_pred CcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC--eEEEEEEccccCcCCCCCHHHHHHH
Confidence 35699999 99 999999999999999999999999 9999999999999887 9999999862 34678888
Q ss_pred HH------hCCCcceecCh--h---H-----HHHHHHh-------cC--------------cCCCCeEEEEcCCCccccc
Q 016404 96 FK------CMPWLAVPFDE--T---L-----HKKLRIR-------YR--------------VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 96 ~~------~~~~~~~~~~~--~---~-----~~~l~~~-------~~--------------v~~~P~~~~~d~~G~i~~~ 138 (390)
++ ++. +.+|+.. + . ...+... ++ +...|+.+|||++|+++.+
T Consensus 114 ~~~~~~~~~~~-~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~ 192 (215)
T 2i3y_A 114 LKYVRPGGGFV-PSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMR 192 (215)
T ss_dssp HHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred HHhccchhccC-ccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEE
Confidence 88 555 3455421 1 0 1122222 11 2334899999999999865
Q ss_pred c
Q 016404 139 D 139 (390)
Q Consensus 139 ~ 139 (390)
.
T Consensus 193 ~ 193 (215)
T 2i3y_A 193 W 193 (215)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=140.01 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=91.9
Q ss_pred cCCCc-cccCccCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC------CC
Q 016404 30 SRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM------PW 101 (390)
Q Consensus 30 ~~~g~-~~l~~~~gk~vll~F~a-~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~------~~ 101 (390)
+.+|+ ++|++++||++||+||+ +||++|..++|.|.+++++|++.+ ++|++|++|. .+..++|++.. ..
T Consensus 64 d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g--v~vv~Is~D~-~~~~~~~~~~~~~~~~~~~ 140 (240)
T 3qpm_A 64 NGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN--TEVVACSVDS-QFTHLAWIITPRKQGGLGP 140 (240)
T ss_dssp TTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT--EEEEEEESSC-HHHHHHHHHSCGGGTCCCS
T ss_pred CCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHHHHHHHHHhhcCCCC
Confidence 56677 99999999999999998 999999999999999999999877 9999999985 44567777754 13
Q ss_pred cceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~~ 140 (390)
+.+|+..|....+++.||+. .+|+++|||++|+|++...
T Consensus 141 ~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~ 185 (240)
T 3qpm_A 141 MKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITM 185 (240)
T ss_dssp CSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred CceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEe
Confidence 56666566668999999997 6899999999999987643
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-16 Score=133.64 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=93.2
Q ss_pred ceeecCCC-----ccccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC
Q 016404 26 EFLLSRQG-----KVPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 26 ~~l~~~~g-----~~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 99 (390)
++|.+.+| .+++++++||+++|+|| ++||++|+.++|.|.++++++++.+ +++++|++|. .+..++|.+++
T Consensus 10 f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d~-~~~~~~~~~~~ 86 (187)
T 1we0_A 10 FRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDT-HFVHKAWHENS 86 (187)
T ss_dssp CEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHHHHHHHSC
T ss_pred eEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHHHHHHHHHh
Confidence 44666543 39999999999999999 9999999999999999999998866 9999999985 55678888876
Q ss_pred C---CcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccccc
Q 016404 100 P---WLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 100 ~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~~ 140 (390)
. -+.+|+..+....+++.|++. ++|+++++|++|+++.+..
T Consensus 87 ~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~ 136 (187)
T 1we0_A 87 PAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEI 136 (187)
T ss_dssp HHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred ccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEe
Confidence 2 245566455567899999998 9999999999999987653
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=142.02 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=91.3
Q ss_pred cCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhc
Q 016404 182 EGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 259 (390)
Q Consensus 182 ~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 259 (390)
++|+|++ +.+|++++|++++||+|||+|| +.|||.|..+++.|.+ .. ..+++|++||.|. .....++...
T Consensus 3 k~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~---~~~~~v~gis~D~-~~~~~~f~~~ 74 (322)
T 4eo3_A 3 RVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----EN---FEKAQVVGISRDS-VEALKRFKEK 74 (322)
T ss_dssp BCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SC---CTTEEEEEEESCC-HHHHHHHHHH
T ss_pred CCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----Hh---hCCCEEEEEeCCC-HHHHHHHHHh
Confidence 5899999 9999999999999999999999 5799999998887753 12 2679999999984 4555566655
Q ss_pred CCcccccCCchHHHHHHHHccc----cccceEEEECCCCcEEee
Q 016404 260 MPWLAIPYEDRARQDLCRIFNI----KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~v----~~~P~~~lid~~G~v~~~ 299 (390)
++ +.+|+..|.+..+++.||| ..+|++||||++|+|++.
T Consensus 75 ~~-l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~ 117 (322)
T 4eo3_A 75 ND-LKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKE 117 (322)
T ss_dssp HT-CCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEE
T ss_pred hC-CceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEE
Confidence 54 5788888889999999999 458999999999999876
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=128.81 Aligned_cols=114 Identities=14% Similarity=0.242 Sum_probs=88.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---ChhHHHHHHHhC
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEEHFKCM 99 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~-~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~~ 99 (390)
.++|.|.+|+ +++++++||++||+||++||+ +|...++.|.++++.+++.+.++.+|+|++|. +.+.+++|++++
T Consensus 14 dF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~ 93 (170)
T 4hde_A 14 TFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKF 93 (170)
T ss_dssp CCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTT
T ss_pred CcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHc
Confidence 4669999999 999999999999999999997 89999999999999998877779999999984 456788888865
Q ss_pred C-----Ccceec-ChhHHHHH-HHhcC----------cCCCCeEEEEcCCCccccc
Q 016404 100 P-----WLAVPF-DETLHKKL-RIRYR----------VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 100 ~-----~~~~~~-~~~~~~~l-~~~~~----------v~~~P~~~~~d~~G~i~~~ 138 (390)
. |..+.. .......+ ...|+ +.+.|+++++|++|+++..
T Consensus 94 ~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~ 149 (170)
T 4hde_A 94 TEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKK 149 (170)
T ss_dssp CSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEE
T ss_pred CCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEE
Confidence 4 332322 12222222 22333 3456899999999999743
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-16 Score=133.13 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=89.1
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCC-ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~-C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ +++++++||++||+||++| |++|+.++|.|.+++++ .+ +++++|++|. .+..++|++++++.
T Consensus 26 ~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~--v~vv~Is~D~-~~~~~~~~~~~~~~ 99 (175)
T 1xvq_A 26 AFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SG--ATVLCVSKDL-PFAQKRFCGAEGTE 99 (175)
T ss_dssp CCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TT--CEEEEEESSC-HHHHTTCC------
T ss_pred CeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cC--CEEEEEECCC-HHHHHHHHHHcCCC
Confidence 4569999999 9999999999999999999 99999999999999998 33 8999999974 44567777777643
Q ss_pred ceecChhHHHHHHHhcCcCCC---------CeEEEEcCCCccccccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRI---------PSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~---------P~~~~~d~~G~i~~~~~ 140 (390)
.+|+..+....+++.|++... |+++++|++|++++...
T Consensus 100 ~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~ 146 (175)
T 1xvq_A 100 NVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL 146 (175)
T ss_dssp CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred CceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEE
Confidence 667755555789999999877 99999999999987653
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-16 Score=131.83 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=93.0
Q ss_pred ceee-cCCCc-cccCc-cCCCEEEEEE-ecCCChhhh-hhHHHHHHHHHHHhhCCCcEEEEE-EecCCChhHHHHHHHhC
Q 016404 26 EFLL-SRQGK-VPLSS-CGGKTICLFF-SANWCRPCK-TFTPQLVQLYDTLRTRGTELEVIF-ISFDHDENGFEEHFKCM 99 (390)
Q Consensus 26 ~~l~-~~~g~-~~l~~-~~gk~vll~F-~a~~C~~C~-~~~p~l~~~~~~~~~~~~~~~vv~-v~~d~~~~~~~~~~~~~ 99 (390)
++|. +.+|+ ++|++ ++||+++|+| |++|||+|. .++|.|.+++++|++.| +++++ |+.| +....++|++++
T Consensus 24 f~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g--v~vv~~iS~D-~~~~~~~f~~~~ 100 (173)
T 3mng_A 24 VEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVN-DAFVTGEWGRAH 100 (173)
T ss_dssp CEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESS-CHHHHHHHHHHT
T ss_pred eEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CEEEEEEcCC-CHHHHHHHHHHh
Confidence 4488 89999 99999 5999766655 599999999 59999999999999887 88997 9988 566788999988
Q ss_pred CCc-ceecChhHHHHHHHhcCcC-------------CCCeEEEEcCCCccccccc
Q 016404 100 PWL-AVPFDETLHKKLRIRYRVD-------------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 100 ~~~-~~~~~~~~~~~l~~~~~v~-------------~~P~~~~~d~~G~i~~~~~ 140 (390)
+.. .+|+..|...++++.||+. ..|+.+++| +|+|++...
T Consensus 101 ~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v 154 (173)
T 3mng_A 101 KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNV 154 (173)
T ss_dssp TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEE
T ss_pred CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEE
Confidence 753 4788777778999999986 359999999 999987654
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=130.83 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=84.7
Q ss_pred cceeecCC-Cc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHH
Q 016404 25 VEFLLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH 95 (390)
Q Consensus 25 ~~~l~~~~-g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 95 (390)
.++|.+.+ |+ ++|++++||+|||+||++||++| .++|.|++++++|++.+ ++|++|++|. +.+..++|
T Consensus 19 dF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g--~~vlgvs~d~f~~~e~~~~~~i~~f 95 (207)
T 2r37_A 19 EYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG--LVILGFPCNQFGKQEPGENSEILPT 95 (207)
T ss_dssp GCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT--EEEEEEECCCBTTCCCSCHHHHHHH
T ss_pred CeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC--EEEEEEECcccCcCCCCCHHHHHHH
Confidence 35699999 99 99999999999999999999999 79999999999999887 9999999762 34678888
Q ss_pred HH------hCCCcceecCh--h-----H---HHHHHHhc-------C--------------cCCCCeEEEEcCCCccccc
Q 016404 96 FK------CMPWLAVPFDE--T-----L---HKKLRIRY-------R--------------VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 96 ~~------~~~~~~~~~~~--~-----~---~~~l~~~~-------~--------------v~~~P~~~~~d~~G~i~~~ 138 (390)
++ +++ +.+|+.. + . ...+.... + +...|+.+|||++|+++.+
T Consensus 96 ~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~ 174 (207)
T 2r37_A 96 LKYVRPGGGFV-PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMR 174 (207)
T ss_dssp HHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred HHhcchhhccC-ccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEE
Confidence 88 655 3455421 1 0 11222221 1 2334899999999999865
Q ss_pred c
Q 016404 139 D 139 (390)
Q Consensus 139 ~ 139 (390)
.
T Consensus 175 ~ 175 (207)
T 2r37_A 175 W 175 (207)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-16 Score=134.41 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=94.6
Q ss_pred cceeecC--CC----ccccCcc-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHH
Q 016404 25 VEFLLSR--QG----KVPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~--~g----~~~l~~~-~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 96 (390)
.++|.+. +| .++++++ +||+++|+|| ++||++|+.++|.|.++++++++.+ +++++|++|. .+..++|+
T Consensus 9 ~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~-~~~~~~~~ 85 (198)
T 1zof_A 9 DFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDS-EQVHFAWK 85 (198)
T ss_dssp CCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHHHHH
T ss_pred ceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHHHHHHH
Confidence 3457777 78 3999999 9999999999 9999999999999999999998876 9999999985 56778888
Q ss_pred Hh-------CCCcceecChhHHHHHHHhcCcC-----CCCeEEEEcCCCcccccc
Q 016404 97 KC-------MPWLAVPFDETLHKKLRIRYRVD-----RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 97 ~~-------~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~~~d~~G~i~~~~ 139 (390)
++ ++ +.+|+..+....+++.|++. ++|+++++|++|+++.+.
T Consensus 86 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~ 139 (198)
T 1zof_A 86 NTPVEKGGIGQ-VSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV 139 (198)
T ss_dssp TSCGGGTCCCC-CSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred HhhhhcccccC-ceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEE
Confidence 76 33 45566555667899999999 999999999999998754
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-16 Score=130.72 Aligned_cols=110 Identities=11% Similarity=0.147 Sum_probs=92.3
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ +++++++||+++|+|| ++||++|..++|.|.++++++ .+ +++++|+.|. .+..++|+++++..
T Consensus 29 ~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~--v~vv~Is~d~-~~~~~~~~~~~~~~ 103 (171)
T 2yzh_A 29 EAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EG--VDVTVVSMDL-PFAQKRFCESFNIQ 103 (171)
T ss_dssp CEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESSC-HHHHHHHHHHTTCC
T ss_pred ceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CC--ceEEEEeCCC-HHHHHHHHHHcCCC
Confidence 4568999999 9999999999999999 899999999999999999998 33 9999999984 56688899887742
Q ss_pred ceecChh-HHHHHHHhcCcCC---------CCeEEEEcCCCccccccc
Q 016404 103 AVPFDET-LHKKLRIRYRVDR---------IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~-~~~~l~~~~~v~~---------~P~~~~~d~~G~i~~~~~ 140 (390)
.+|+..+ ....+ +.|++.. .|+.+++|++|++++...
T Consensus 104 ~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~ 150 (171)
T 2yzh_A 104 NVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQL 150 (171)
T ss_dssp SSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred CeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEe
Confidence 5666445 45677 9999862 699999999999987653
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-16 Score=129.24 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=93.1
Q ss_pred cceeecCCCc-cccCccCCC--EEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGK--TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk--~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.+.|.+.+|+ +++++++|| +++|+|| ++||++|..++|.|.++++++++++ +|++|+.| +.+..++|+++++
T Consensus 15 ~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~---~vv~is~d-~~~~~~~~~~~~~ 90 (159)
T 2a4v_A 15 DLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA---AVFGLSAD-SVTSQKKFQSKQN 90 (159)
T ss_dssp SCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC---EEEEEESC-CHHHHHHHHHHHT
T ss_pred CeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC---cEEEEeCC-CHHHHHHHHHHhC
Confidence 3568999999 999999887 8999997 9999999999999999999998765 79999998 5667888888776
Q ss_pred CcceecChhHHHHHHHhcCcCCCC------eEEEEcCCCcccccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVDRIP------SLIPLASDGTLIEED 139 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~~~P------~~~~~d~~G~i~~~~ 139 (390)
+.+|+..+....+++.|++...| +.+++ ++|++++..
T Consensus 91 -~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~ 133 (159)
T 2a4v_A 91 -LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKR 133 (159)
T ss_dssp -CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEE
T ss_pred -CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEE
Confidence 35666555667899999999988 78888 999998654
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=128.94 Aligned_cols=113 Identities=23% Similarity=0.275 Sum_probs=90.6
Q ss_pred cceeecCCCccccCccCCCEEEEEEecCCChh-hhhhHHHHHHHHHHHhhCC-CcEEEEEEecCC---ChhHHHHHHHhC
Q 016404 25 VEFLLSRQGKVPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRG-TELEVIFISFDH---DENGFEEHFKCM 99 (390)
Q Consensus 25 ~~~l~~~~g~~~l~~~~gk~vll~F~a~~C~~-C~~~~p~l~~~~~~~~~~~-~~~~vv~v~~d~---~~~~~~~~~~~~ 99 (390)
.++|.+.+|.+++++++||+++|+||++||++ |+.++|.|.++++++++++ .++++++|++|. +.+.+++|++++
T Consensus 18 ~f~l~~~~g~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~ 97 (172)
T 2k6v_A 18 DFALEGPQGPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAF 97 (172)
T ss_dssp CCEEECSSSEEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHh
Confidence 35588888888999999999999999999997 9999999999999998641 239999999985 356788898877
Q ss_pred CCcceecChh---HHHHHHHhcCc---------------CCCCeEEEEcCCCcccccc
Q 016404 100 PWLAVPFDET---LHKKLRIRYRV---------------DRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 100 ~~~~~~~~~~---~~~~l~~~~~v---------------~~~P~~~~~d~~G~i~~~~ 139 (390)
+ ..+++..+ ....+++.|++ .++|+++++| +|+++.+.
T Consensus 98 ~-~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~ 153 (172)
T 2k6v_A 98 H-PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLY 153 (172)
T ss_dssp C-TTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEE
T ss_pred C-CCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEE
Confidence 6 34555322 33678777764 5789999999 99998654
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-16 Score=138.06 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=91.4
Q ss_pred cCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC------CC
Q 016404 30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM------PW 101 (390)
Q Consensus 30 ~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~------~~ 101 (390)
+.+|+ ++|++++||++||+|| ++||++|..++|.|.+++++|++.+ ++|++|++|. .....+|++.+ .-
T Consensus 78 d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g--v~vv~IS~D~-~~~~~~~~~~~~~~~g~~~ 154 (254)
T 3tjj_A 78 DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDS-QFTHLAWINTPRRQGGLGP 154 (254)
T ss_dssp TTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHHHHHHTSCGGGTSCCS
T ss_pred CCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEcCCC-HHHHHHHHHHHHHhcCCcc
Confidence 56788 9999999999999999 9999999999999999999999877 9999999984 45567777754 13
Q ss_pred cceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~~ 140 (390)
+.+|+..|....+++.||+. .+|+++|||++|+|++...
T Consensus 155 ~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~ 199 (254)
T 3tjj_A 155 IRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 199 (254)
T ss_dssp CSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred cccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEe
Confidence 56666556668999999986 5899999999999987643
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=125.71 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=95.4
Q ss_pred hhccCCceEE-eCCC----------Ceeeeccc-CCcE-EEEEEccCCCcccHh-hHHHHHHHHHHhhcccCCce-EEEE
Q 016404 179 LAIEGRDYVL-SRDH----------RKITVSEL-AGKT-IGLYFGAHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVL 243 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g----------~~~~l~~~-~gk~-vlv~F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~-~vv~ 243 (390)
+|++.|+.++ ...+ ++++|+++ +||+ ||++||+.|||.|.. ++|.|.+.+++|++ .++ +|++
T Consensus 12 ~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~---~g~d~Vig 88 (176)
T 4f82_A 12 VGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRA---AGIDEIWC 88 (176)
T ss_dssp TTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred cCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHh---CCCCEEEE
Confidence 5889999887 2222 68999997 9985 566778999999999 99999999999987 789 9999
Q ss_pred EecCCCHHHHHHhhhcCCcc-cccCCchHHHHHHHHcccc-----------ccceEEEECCCCcEEeeC
Q 016404 244 VSTDRDHKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 244 v~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~ 300 (390)
||.|. .....++.+..+.. .+|+..|.+..+++.||+. ..|.++|| ++|+|++..
T Consensus 89 IS~D~-~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~ 155 (176)
T 4f82_A 89 VSVND-AFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLA 155 (176)
T ss_dssp EESSC-HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEE
T ss_pred EeCCC-HHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEE
Confidence 99995 55566666655543 4888888889999999973 24889999 999999884
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=116.32 Aligned_cols=74 Identities=24% Similarity=0.602 Sum_probs=60.0
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+++.++|+|+|+|||+||+||+.+.|.+.++++.+++ +.++.| |.++. ..+++
T Consensus 15 l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~v--d~d~~---------------------~~l~~ 67 (105)
T 3zzx_A 15 LNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFLKV--DVDEC---------------------EDIAQ 67 (105)
T ss_dssp HHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEE--ETTTC---------------------HHHHH
T ss_pred HHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC----eEEEEE--ecccC---------------------HHHHH
Confidence 3445689999999999999999999999999988754 444444 44443 68999
Q ss_pred hcCcCCCCeEEEEcCCCccccc
Q 016404 117 RYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+|+|+++||++++. +|+++.+
T Consensus 68 ~~~V~~~PT~~~~~-~G~~v~~ 88 (105)
T 3zzx_A 68 DNQIACMPTFLFMK-NGQKLDS 88 (105)
T ss_dssp HTTCCBSSEEEEEE-TTEEEEE
T ss_pred HcCCCeecEEEEEE-CCEEEEE
Confidence 99999999999994 8987754
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=126.31 Aligned_cols=102 Identities=23% Similarity=0.403 Sum_probs=76.8
Q ss_pred hccCCceEEeCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHH
Q 016404 180 AIEGRDYVLSRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDL 255 (390)
Q Consensus 180 g~~~p~f~l~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 255 (390)
+...+++ +..++.+.++..+||+++|+|| ++||++|+.+.|.| .++.+.+. .++.++.|+.+...
T Consensus 27 ~~~~~~~--~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~----~~~~~v~vd~~~~~----- 95 (154)
T 2ju5_A 27 AAANLQW--ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG----VHLHMVEVDFPQKN----- 95 (154)
T ss_dssp CCCCCCE--ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH----HHCEEEEEECCSSC-----
T ss_pred ccCCCCC--CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc----CcEEEEEecCcccc-----
Confidence 3344455 3346667777788999999999 99999999999999 77765553 45777777776542
Q ss_pred hhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 256 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.. .++ ..+.+..+++.|+|.++|+++++|++|+++.+
T Consensus 96 ---~~---~~~-~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~ 132 (154)
T 2ju5_A 96 ---HQ---PEE-QRQKNQELKAQYKVTGFPELVFIDAEGKQLAR 132 (154)
T ss_dssp ---CC---CHH-HHHHHHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred ---CC---Chh-hHhhHHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence 01 111 12446789999999999999999999999987
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-15 Score=121.48 Aligned_cols=111 Identities=26% Similarity=0.358 Sum_probs=84.6
Q ss_pred ccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhc
Q 016404 181 IEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 259 (390)
Q Consensus 181 ~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 259 (390)
.+.++..+ +.+++.+.....++++++|+||++||++|+.+.|.|.++++++. .++.++.|++|..
T Consensus 33 ~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~----~~~~~~~vd~~~~---------- 98 (148)
T 3p2a_A 33 HSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA----GKVRFVKVNTEAE---------- 98 (148)
T ss_dssp CBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC----------
T ss_pred CccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcC----CceEEEEEECcCC----------
Confidence 33444444 67777666555678999999999999999999999999999986 4588888887753
Q ss_pred CCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCC
Q 016404 260 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA 333 (390)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~ 333 (390)
..+++.|+|.++|+++++ ++|+++.+ ..|... .+++.+.+++....
T Consensus 99 -------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~-------~~G~~~-------~~~l~~~l~~~l~~ 144 (148)
T 3p2a_A 99 -------------PALSTRFRIRSIPTIMLY-RNGKMIDM-------LNGAVP-------KAPFDNWLDEQLSR 144 (148)
T ss_dssp -------------HHHHHHTTCCSSSEEEEE-ETTEEEEE-------ESSCCC-------HHHHHHHHHHHHHS
T ss_pred -------------HHHHHHCCCCccCEEEEE-ECCeEEEE-------EeCCCC-------HHHHHHHHHHHhcc
Confidence 678999999999999999 68988876 345443 45555555554433
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=128.45 Aligned_cols=110 Identities=14% Similarity=0.240 Sum_probs=91.1
Q ss_pred eeecC----CC-----c-cccCcc-CCC-EEEEEEecCCChhhhhh-HHHHHHHHHHHhhCCCcEE-EEEEecCCChhHH
Q 016404 27 FLLSR----QG-----K-VPLSSC-GGK-TICLFFSANWCRPCKTF-TPQLVQLYDTLRTRGTELE-VIFISFDHDENGF 92 (390)
Q Consensus 27 ~l~~~----~g-----~-~~l~~~-~gk-~vll~F~a~~C~~C~~~-~p~l~~~~~~~~~~~~~~~-vv~v~~d~~~~~~ 92 (390)
.|.+. +| + ++|+++ +|| +||++||++|||+|+.+ +|.|.++++++++.+ ++ |++|+.| +....
T Consensus 17 ~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g--~~~vv~Is~d-~~~~~ 93 (171)
T 2pwj_A 17 SLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG--VDSVICVAIN-DPYTV 93 (171)
T ss_dssp CCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT--CSEEEEEESS-CHHHH
T ss_pred EEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCC-CHHHH
Confidence 36666 47 8 999996 996 67778999999999999 999999999999877 88 9999998 45578
Q ss_pred HHHHHhCCC-cceecChhHHHHHHHhcCcCC-----------CCeEEEEcCCCccccccc
Q 016404 93 EEHFKCMPW-LAVPFDETLHKKLRIRYRVDR-----------IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 93 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~~-----------~P~~~~~d~~G~i~~~~~ 140 (390)
++|+++++. ..+|+..|....+++.||+.. .|+.++++ +|+|++...
T Consensus 94 ~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~ 152 (171)
T 2pwj_A 94 NAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNV 152 (171)
T ss_dssp HHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred HHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEe
Confidence 899998886 467876677789999999852 56788888 999987553
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=129.81 Aligned_cols=112 Identities=12% Similarity=0.205 Sum_probs=92.5
Q ss_pred cceeecC--CC-c-cccCc-cCCCEE-EEEEecCCChhhhh-hHHHHHHHHHHHhhCCCcEE-EEEEecCCChhHHHHHH
Q 016404 25 VEFLLSR--QG-K-VPLSS-CGGKTI-CLFFSANWCRPCKT-FTPQLVQLYDTLRTRGTELE-VIFISFDHDENGFEEHF 96 (390)
Q Consensus 25 ~~~l~~~--~g-~-~~l~~-~~gk~v-ll~F~a~~C~~C~~-~~p~l~~~~~~~~~~~~~~~-vv~v~~d~~~~~~~~~~ 96 (390)
.++|.+. +| + ++|++ ++||++ |++||++|||+|+. ++|.|.+++++|++.| ++ |++|+.| +....++|.
T Consensus 34 df~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d-~~~~~~~f~ 110 (184)
T 3uma_A 34 NATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG--VDDIAVVAVN-DLHVMGAWA 110 (184)
T ss_dssp CCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESS-CHHHHHHHH
T ss_pred CcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC--CCEEEEEECC-CHHHHHHHH
Confidence 3457887 89 8 99999 899955 55566999999999 7999999999999887 88 9999998 556788899
Q ss_pred HhCCCc-ceecChhHHHHHHHhcCcC-----------CCCeEEEEcCCCccccccc
Q 016404 97 KCMPWL-AVPFDETLHKKLRIRYRVD-----------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 97 ~~~~~~-~~~~~~~~~~~l~~~~~v~-----------~~P~~~~~d~~G~i~~~~~ 140 (390)
++++.. .+|+..|....+++.||+. ..|+.++++ +|+|++...
T Consensus 111 ~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~ 165 (184)
T 3uma_A 111 THSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNI 165 (184)
T ss_dssp HHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEE
T ss_pred HHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEE
Confidence 887743 3788777778999999985 358899997 999987654
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=117.51 Aligned_cols=93 Identities=27% Similarity=0.419 Sum_probs=74.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+||++||++|+.+.|.|.+++++++ .++.++.|++|.. ..+++.|+
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~ 89 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYD----GQIVIYKVDTEKE-----------------------QELAGAFG 89 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc----CCEEEEEEeCCCC-----------------------HHHHHHcC
Confidence 45899999999999999999999999999986 4588888888753 67899999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCCCC
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP 335 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p 335 (390)
|.++|+++++|++|+++.. .|... .++|.+.+++.....+
T Consensus 90 v~~~Pt~~~~~~~G~~~~~--------~G~~~-------~~~l~~~l~~~~~~~~ 129 (136)
T 2l5l_A 90 IRSIPSILFIPMEGKPEMA--------QGAMP-------KASFKKAIDEFLLKKE 129 (136)
T ss_dssp CCSSCEEEEECSSSCCEEE--------ESCCC-------HHHHHHHHHHHHTSCT
T ss_pred CCCCCEEEEECCCCcEEEE--------eCCCC-------HHHHHHHHHHHhhccC
Confidence 9999999999999998733 34333 4556666666544433
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-15 Score=117.07 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=66.5
Q ss_pred cEEEEEEccCCC--cccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 203 KTIGLYFGAHWC--PPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 203 k~vlv~F~a~wC--~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++|||+|||+|| ++|+.+.|.|.++.++|. .++.|+-|++|. +..++.+|+
T Consensus 34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~----~~v~~~KVdvDe-----------------------~~~la~~yg 86 (137)
T 2qsi_A 34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFP----GRLVAAEVAAEA-----------------------ERGLMARFG 86 (137)
T ss_dssp SEEEEEECCCTTTCTTHHHHHHHHHHHHHTST----TTEEEEEECGGG-----------------------HHHHHHHHT
T ss_pred CcEEEEEeCCccCCCchhhHHhHHHHHHHHcc----CCcEEEEEECCC-----------------------CHHHHHHcC
Confidence 499999999999 999999999999999996 578888888875 589999999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccC
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA 312 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~ 312 (390)
|+++||+++| ++|+++.+ ..|...
T Consensus 87 V~siPTlilF-kdG~~v~~-------~vG~~~ 110 (137)
T 2qsi_A 87 VAVCPSLAVV-QPERTLGV-------IAKIQD 110 (137)
T ss_dssp CCSSSEEEEE-ECCEEEEE-------EESCCC
T ss_pred CccCCEEEEE-ECCEEEEE-------EeCCCC
Confidence 9999999999 78888877 567665
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-15 Score=119.27 Aligned_cols=83 Identities=20% Similarity=0.428 Sum_probs=72.7
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
+.+.+|. +.++.++|++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+
T Consensus 36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------ 94 (141)
T 3hxs_A 36 IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKE------------------ 94 (141)
T ss_dssp TCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------
T ss_pred hhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCCC------------------
Confidence 5677788 8999999999999999999999999999999999999864 66777776643
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
..++++|++.++|++++++++|+++
T Consensus 95 -----~~~~~~~~v~~~Pt~~~~~~~g~~~ 119 (141)
T 3hxs_A 95 -----PELARDFGIQSIPTIWFVPMKGEPQ 119 (141)
T ss_dssp -----HHHHHHTTCCSSSEEEEECSSSCCE
T ss_pred -----HHHHHHcCCCCcCEEEEEeCCCCEE
Confidence 5789999999999999999899875
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=119.97 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=72.0
Q ss_pred CCcEEEEEEccCC--CcccHhhHHHHHHHHHHhhcccCCc-eEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHC-FEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~-~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.+++|||+|||+| |++|+.+.|.|.+++++|. ++ +.|+.|++|. +.+++.
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~----g~~v~~~KVdvDe-----------------------~~~lA~ 85 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFP----DYTWQVAIADLEQ-----------------------SEAIGD 85 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCT----TSCCEEEECCHHH-----------------------HHHHHH
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcC----CCeEEEEEEECCC-----------------------CHHHHH
Confidence 3467999999999 9999999999999999997 45 7888887774 589999
Q ss_pred HccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhc
Q 016404 278 IFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 331 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 331 (390)
+|||+++||+++| ++|+++.+ ..|... -.+|.+.+++.+
T Consensus 86 ~ygV~sIPTlilF-k~G~~v~~-------~~G~~~-------k~~l~~~i~~~l 124 (140)
T 2qgv_A 86 RFGAFRFPATLVF-TGGNYRGV-------LNGIHP-------WAELINLMRGLV 124 (140)
T ss_dssp HHTCCSSSEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHHHH
T ss_pred HcCCccCCEEEEE-ECCEEEEE-------EecCCC-------HHHHHHHHHHHh
Confidence 9999999999999 78888877 567665 444555555433
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-15 Score=131.64 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=93.1
Q ss_pred ceeecCCCccccCccCCC-EEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHH------
Q 016404 26 EFLLSRQGKVPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK------ 97 (390)
Q Consensus 26 ~~l~~~~g~~~l~~~~gk-~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~------ 97 (390)
+.+.+.+|.+++++++|| +++|+|| ++||++|..+++.|.+++++|++.+ ++|++|++|. .++.++|++
T Consensus 12 F~l~~~~G~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~--v~vigIS~D~-~~~~~~~~~~i~~~~ 88 (233)
T 2v2g_A 12 FEADSTIGKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG--VKLIALSCDN-VADHKEWSEDVKCLS 88 (233)
T ss_dssp CEEEETTCCEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHHHHHHHHHHHH
T ss_pred cEEecCCCCEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC--CEEEEEcCCC-HHHHHHHHHHHHHhh
Confidence 458888888999999998 9999998 9999999999999999999999877 9999999995 445566666
Q ss_pred hCC-CcceecChhHHHHHHHhcCcC------------CCCeEEEEcCCCccccccc
Q 016404 98 CMP-WLAVPFDETLHKKLRIRYRVD------------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 98 ~~~-~~~~~~~~~~~~~l~~~~~v~------------~~P~~~~~d~~G~i~~~~~ 140 (390)
+.+ .+.+|+..|....+++.||+. .+|+++|||++|+++....
T Consensus 89 ~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~ 144 (233)
T 2v2g_A 89 GVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSIL 144 (233)
T ss_dssp TCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEE
T ss_pred CcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEe
Confidence 341 356677566668899999985 5899999999999986553
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=113.46 Aligned_cols=87 Identities=23% Similarity=0.456 Sum_probs=73.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++ .++.++.|++|.+ ..++++|+
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~ 68 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG----DKLKIVKIDVDEN-----------------------QETAGKYG 68 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHT----TTCEEEEEETTTC-----------------------CSHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCcEEEEEECCCC-----------------------HHHHHHcC
Confidence 67999999999999999999999999999987 4688999888753 56889999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
|.++|+++++ ++|+++.+ ..|... .++|.+.+++
T Consensus 69 v~~~Pt~~~~-~~G~~~~~-------~~G~~~-------~~~l~~~l~~ 102 (112)
T 2voc_A 69 VMSIPTLLVL-KDGEVVET-------SVGFKP-------KEALQELVNK 102 (112)
T ss_dssp CCSBSEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHT
T ss_pred CCcccEEEEE-eCCEEEEE-------EeCCCC-------HHHHHHHHHH
Confidence 9999999999 99999876 456554 5566666654
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=140.61 Aligned_cols=241 Identities=11% Similarity=0.169 Sum_probs=139.5
Q ss_pred cchhhhhhccCcceeecCCCc-cccCccCCCEEEEEEecC-CChh---hhhhHHHHHHHHHHHhhCCCcEEEEEEecCCC
Q 016404 14 SDFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSAN-WCRP---CKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (390)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~g~-~~l~~~~gk~vll~F~a~-~C~~---C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~ 88 (390)
.++..++.....+.+...+.. .. .+-+.++++.|+.. .-.. ...+...+.++++++++++..+.++.++ .+
T Consensus 206 ~~l~~fi~~~~~p~v~e~t~~n~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D--~~ 281 (481)
T 3f8u_A 206 GKIKKFIQENIFGICPHMTEDNKD--LIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVAS--RK 281 (481)
T ss_dssp HHHHHHHHHHTTTTSCEECTTTHH--HHTTSSEEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE--TT
T ss_pred HHHHHHHHHhCCCCccccChhHHH--HhcCCCceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEc--HH
Confidence 346777776666666665555 21 12244445555432 2222 2224677888999998765445555554 33
Q ss_pred hhHHHHHHHhCCCcceecChhHHHHHHHhcCcC----CCCeEEEEcCCCccccccccccccccCCCCCCCChh--hHHHH
Q 016404 89 ENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD----RIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRK--RREEL 162 (390)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~----~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~--~~~~l 162 (390)
.. ....+.||+. ..|.+++++.++....-. .. ++.. .+..+
T Consensus 282 ~~---------------------~~~l~~~gl~~~~~~~P~~~i~~~~~~ky~~~----------~~--~t~e~~~l~~f 328 (481)
T 3f8u_A 282 TF---------------------SHELSDFGLESTAGEIPVVAIRTAKGEKFVMQ----------EE--FSRDGKALERF 328 (481)
T ss_dssp TT---------------------HHHHGGGTCCCCTTCSCEEEEECSSSCEEECC----------SC--CCTTSHHHHHH
T ss_pred HH---------------------HHHHHHcCCCcccCCCcEEEEEcCCCcccCCC----------cc--cCccHHHHHHH
Confidence 32 4566788987 689999998555322100 00 1111 22222
Q ss_pred hhcchhhhcccchhHHhhccCCce---EE-eCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCC
Q 016404 163 KAIDDSKRQGGKLEQLLAIEGRDY---VL-SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 237 (390)
Q Consensus 163 ~~~~~~~~~~~~~~~l~g~~~p~f---~l-~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~ 237 (390)
............ +...+.|.. .+ ..+|+.+..... .+|+|+|+|||+||++|+.+.|.|.++++.|++ ..
T Consensus 329 ~~~~~~g~~~~~---~~s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~ 403 (481)
T 3f8u_A 329 LQDYFDGNLKRY---LKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSK--DP 403 (481)
T ss_dssp HHHHHHTCCCCC---CCCCCCCSCCCSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTT--CS
T ss_pred HHHHhcCCcccc---cccCCCCCCCCCCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhcc--CC
Confidence 111111100000 011111111 11 445555543333 479999999999999999999999999999974 13
Q ss_pred ceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcE-EeeCcchhhhhcCccCCCCC
Q 016404 238 CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT-ISTNGKEMISLYGAKAFPFT 316 (390)
Q Consensus 238 ~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v-~~~~g~~~~~~~g~~~~p~~ 316 (390)
++.++.|..+. .++++.|+|.++||+++++++|++ +.+ +.|...
T Consensus 404 ~v~~~~id~~~------------------------~~~~~~~~v~~~Pt~~~~~~~~~~~~~~-------~~G~~~---- 448 (481)
T 3f8u_A 404 NIVIAKMDATA------------------------NDVPSPYEVRGFPTIYFSPANKKLNPKK-------YEGGRE---- 448 (481)
T ss_dssp SEEEEEEETTS------------------------SCCCTTCCCCSSSEEEEECTTCTTSCEE-------CCSCCS----
T ss_pred CEEEEEEECCc------------------------hhhHhhCCCcccCEEEEEeCCCeEeeeE-------eCCCCC----
Confidence 56666666553 235578999999999999887763 222 345444
Q ss_pred hhhHHHHHHHHHHhcCCC
Q 016404 317 ESRIAEIETALKKEGDAL 334 (390)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~ 334 (390)
.+.+.+.+++.+..-
T Consensus 449 ---~~~l~~~l~~~~~~~ 463 (481)
T 3f8u_A 449 ---LSDFISYLQREATNP 463 (481)
T ss_dssp ---HHHHHHHHHHHCSSC
T ss_pred ---HHHHHHHHHHhcCCc
Confidence 677777777765543
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-15 Score=120.27 Aligned_cols=68 Identities=16% Similarity=0.369 Sum_probs=60.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|||+|||+||+||+.+.|.|.+++++|+ ..+.|+.|.+|. ..+++..|+|
T Consensus 41 ~k~VVVdF~A~WCgPCk~m~PvleelA~e~~----~~v~f~kVDVDe-----------------------~~e~a~~y~V 93 (160)
T 2av4_A 41 ERLVCIRFGHDYDPDCMKMDELLYKVADDIK----NFCVIYLVDITE-----------------------VPDFNTMYEL 93 (160)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTT-----------------------CCTTTTTTTC
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcc----CCcEEEEEECCC-----------------------CHHHHHHcCC
Confidence 4899999999999999999999999999996 457788888875 3678999999
Q ss_pred cccceEEEECCCCcEE
Q 016404 282 KGIPALVLIGPDGKTI 297 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~ 297 (390)
.++||+++| ++|+.+
T Consensus 94 ~siPT~~fF-k~G~~v 108 (160)
T 2av4_A 94 YDPVSVMFF-YRNKHM 108 (160)
T ss_dssp CSSEEEEEE-ETTEEE
T ss_pred CCCCEEEEE-ECCEEE
Confidence 999999999 677776
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=116.45 Aligned_cols=76 Identities=32% Similarity=0.556 Sum_probs=65.3
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHH--HHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLI--EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~--~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
+||+|+|+||++||++|+.+.|.|. ++.+.++ .++.++.|+++.. +....+++.
T Consensus 28 ~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~----~~~~~~~vd~~~~--------------------~~~~~l~~~ 83 (133)
T 3fk8_A 28 THKPTLLVFGANWCTDCRALDKSLRNQKNTALIA----KHFEVVKIDVGNF--------------------DRNLELSQA 83 (133)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHH----HHCEEEEEECTTT--------------------TSSHHHHHH
T ss_pred cCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhc----CCEEEEEEeCCcc--------------------cchHHHHHH
Confidence 4789999999999999999999999 9999886 4688888888421 014789999
Q ss_pred ccc---cccceEEEECCCCcEEeeC
Q 016404 279 FNI---KGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 279 ~~v---~~~P~~~lid~~G~v~~~~ 300 (390)
|+| .++|+++++|++|+++.+.
T Consensus 84 ~~v~~~~~~Pt~~~~d~~G~~~~~~ 108 (133)
T 3fk8_A 84 YGDPIQDGIPAVVVVNSDGKVRYTT 108 (133)
T ss_dssp TTCGGGGCSSEEEEECTTSCEEEEC
T ss_pred hCCccCCccceEEEECCCCCEEEEe
Confidence 999 9999999999999999883
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=114.69 Aligned_cols=86 Identities=14% Similarity=0.276 Sum_probs=70.6
Q ss_pred ecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecC
Q 016404 29 LSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFD 107 (390)
Q Consensus 29 ~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 107 (390)
.+.+|. ......+||+++|+||++||++|+.+.|.|.+++++++.. +.++.|++|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~d~~----------------- 71 (126)
T 2l57_A 12 QSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGK---FNIYYARLEEEKN----------------- 71 (126)
T ss_dssp TCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSS---CEEEEEETTSSHH-----------------
T ss_pred cccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCC---eEEEEEeCCCCch-----------------
Confidence 344454 4466668999999999999999999999999999998733 7788888544443
Q ss_pred hhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 108 ETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 108 ~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|++++++++|+++.+
T Consensus 72 ----~~~~~~~~v~~~Pt~~~~~~~G~~~~~ 98 (126)
T 2l57_A 72 ----IDLAYKYDANIVPTTVFLDKEGNKFYV 98 (126)
T ss_dssp ----HHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred ----HHHHHHcCCcceeEEEEECCCCCEEEE
Confidence 689999999999999999999988753
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=113.92 Aligned_cols=70 Identities=19% Similarity=0.406 Sum_probs=61.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++|+++|+||++||++|+.+.|.|.+++++|+ ++.++.|++|. +..+++.|+
T Consensus 30 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----~v~~~~vd~d~-----------------------~~~l~~~~~ 81 (116)
T 3qfa_C 30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS-----NVIFLEVDVDD-----------------------CQDVASECE 81 (116)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT-----TSEEEEEETTT-----------------------THHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CCEEEEEECCC-----------------------CHHHHHHcC
Confidence 57999999999999999999999999998875 27888888775 368999999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 82 v~~~Pt~~~~-~~G~~~~~ 99 (116)
T 3qfa_C 82 VKSMPTFQFF-KKGQKVGE 99 (116)
T ss_dssp CCSSSEEEEE-SSSSEEEE
T ss_pred CccccEEEEE-eCCeEEEE
Confidence 9999999999 88998876
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=111.47 Aligned_cols=83 Identities=16% Similarity=0.317 Sum_probs=68.9
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
..+++.+...-.++++++|+||++||++|+.+.|.+.+++++++ .++.++.|++|..
T Consensus 8 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~------------------- 64 (109)
T 3tco_A 8 VLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK----GKAVFGRLNVDEN------------------- 64 (109)
T ss_dssp ECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTC-------------------
T ss_pred EecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhC----CCceEEEEccccC-------------------
Confidence 34444444333357999999999999999999999999999987 4678888887753
Q ss_pred chHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..+++.|+|.++|+++++ ++|+++.+
T Consensus 65 ----~~~~~~~~i~~~Pt~~~~-~~g~~~~~ 90 (109)
T 3tco_A 65 ----QKIADKYSVLNIPTTLIF-VNGQLVDS 90 (109)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ----HHHHHhcCcccCCEEEEE-cCCcEEEe
Confidence 678999999999999999 99998876
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=133.73 Aligned_cols=162 Identities=14% Similarity=0.166 Sum_probs=102.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHH-------HHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHH
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQ-------LVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKK 113 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~-------l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (390)
++++++|+|||+||+ |+.++|. ++++++.+++.+ +.++.|+++ .+ ..
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~--v~~~~Vd~~--~~---------------------~~ 80 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKD--IGFVMVDAK--KE---------------------AK 80 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSS--EEEEEEETT--TT---------------------HH
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcC--cEEEEEeCC--CC---------------------HH
Confidence 579999999999999 9999998 899999887654 555555544 33 68
Q ss_pred HHHhcCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCC
Q 016404 114 LRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHR 193 (390)
Q Consensus 114 l~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~ 193 (390)
++++|+|.++||++++ ++|++.... |. .........+..... |... .++..
T Consensus 81 l~~~~~v~~~Pt~~~~-~~g~~~~~~--------G~---~~~~~l~~~i~~~~~----------------~~~~-~l~~~ 131 (350)
T 1sji_A 81 LAKKLGFDEEGSLYVL-KGDRTIEFD--------GE---FAADVLVEFLLDLIE----------------DPVE-IINSK 131 (350)
T ss_dssp HHHHHTCCSTTEEEEE-ETTEEEEEC--------SC---CCHHHHHHHHHTTSS----------------CSEE-ECCSH
T ss_pred HHHhcCCCccceEEEE-ECCcEEEec--------CC---CCHHHHHHHHHHhcC----------------Ccce-eccch
Confidence 9999999999999999 477632111 11 011112222221111 1111 11000
Q ss_pred eeeecc---cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCch
Q 016404 194 KITVSE---LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR 270 (390)
Q Consensus 194 ~~~l~~---~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 270 (390)
-.+.. ...++++|.|+++||.. ..+.+.++++.++ .++.+..++
T Consensus 132 -~~~~~~~~~~~~~~vv~ff~~~~~~---~~~~~~~~A~~~~----~~~~f~~~~------------------------- 178 (350)
T 1sji_A 132 -LEVQAFERIEDQIKLIGFFKSEESE---YYKAFEEAAEHFQ----PYIKFFATF------------------------- 178 (350)
T ss_dssp -HHHHHHHHCCSSCEEEEECSCTTSH---HHHHHHHHHHHTT----TTSEEEEEC-------------------------
T ss_pred -HHHHHHhccCCCcEEEEEECCCCcH---HHHHHHHHHHhhc----cCcEEEEEC-------------------------
Confidence 00111 12356788899998654 4577888888886 345554432
Q ss_pred HHHHHHHHccccccceEEEECC
Q 016404 271 ARQDLCRIFNIKGIPALVLIGP 292 (390)
Q Consensus 271 ~~~~l~~~~~v~~~P~~~lid~ 292 (390)
+..+++.|++. .|+++++.+
T Consensus 179 -~~~~~~~~~v~-~p~i~~~~~ 198 (350)
T 1sji_A 179 -DKGVAKKLSLK-MNEVDFYEP 198 (350)
T ss_dssp -CHHHHHHHTCC-TTCEEEECT
T ss_pred -CHHHHHHcCCC-CCcEEEEeC
Confidence 25688999999 999999965
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-14 Score=128.47 Aligned_cols=86 Identities=21% Similarity=0.332 Sum_probs=69.3
Q ss_pred ceeecCCCc-cccCc-cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 26 EFLLSRQGK-VPLSS-CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~-~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
..+++++++ +.-.- -.+++++|+|||+||++|+.+.|.|.++++++++. +.++.|++|.+.+
T Consensus 17 ~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~~------------- 80 (298)
T 3ed3_A 17 PHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNKN------------- 80 (298)
T ss_dssp TTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTTT-------------
T ss_pred CCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCccC-------------
Confidence 345666666 44222 25899999999999999999999999999999764 7899999886554
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
..++++|+|.++|++++++ +|+++
T Consensus 81 --------~~l~~~~~I~~~Pt~~~~~-~g~~v 104 (298)
T 3ed3_A 81 --------KALCAKYDVNGFPTLMVFR-PPKID 104 (298)
T ss_dssp --------HHHHHHTTCCBSSEEEEEE-CCCC-
T ss_pred --------HHHHHhCCCCccceEEEEE-CCcee
Confidence 7899999999999999997 56543
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=115.75 Aligned_cols=86 Identities=20% Similarity=0.464 Sum_probs=71.9
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
+.+...+++ ++....+||+++|+||++||++|+.+.|.+.+++++++++ +.++.|++|..
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~---------------- 85 (128)
T 3ul3_B 25 PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLDKN---------------- 85 (128)
T ss_dssp -CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---EEEEEEEGGGC----------------
T ss_pred CccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCC----------------
Confidence 345566777 8888889999999999999999999999999999999854 67777766532
Q ss_pred ecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 105 PFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 105 ~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|+++++ ++|+++.+
T Consensus 86 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 111 (128)
T 3ul3_B 86 -------ESLARKFSVKSLPTIILL-KNKTMLAR 111 (128)
T ss_dssp -------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -------HHHHHHcCCCCcCEEEEE-ECCEEEEE
Confidence 588999999999999999 58887643
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=116.94 Aligned_cols=98 Identities=18% Similarity=0.390 Sum_probs=73.1
Q ss_pred eeecccCCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchH
Q 016404 195 ITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA 271 (390)
Q Consensus 195 ~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 271 (390)
+.++..+||+++|+||++||++|+.+.|.+ ..+.+.+. .++.++.|..+.+.
T Consensus 20 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~--------------------- 74 (130)
T 2kuc_A 20 LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN----RHFVNLKMDMEKGE--------------------- 74 (130)
T ss_dssp HHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH----HHSEEEEECSSSTT---------------------
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh----cCeEEEEEecCCcc---------------------
Confidence 344445689999999999999999999998 66666654 34566666665421
Q ss_pred HHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhc
Q 016404 272 RQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 331 (390)
Q Consensus 272 ~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 331 (390)
...+++.|+|.++|+++++|++|+++.+ ..|... .++|.+.+++..
T Consensus 75 ~~~~~~~~~v~~~Pt~~~~d~~G~~~~~-------~~G~~~-------~~~l~~~l~~~~ 120 (130)
T 2kuc_A 75 GVELRKKYGVHAYPTLLFINSSGEVVYR-------LVGAED-------APELLKKVKLGV 120 (130)
T ss_dssp HHHHHHHTTCCSSCEEEEECTTSCEEEE-------EESCCC-------HHHHHHHHHHHH
T ss_pred hHHHHHHcCCCCCCEEEEECCCCcEEEE-------ecCCCC-------HHHHHHHHHHHH
Confidence 5789999999999999999999999877 345443 445555565543
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=110.25 Aligned_cols=70 Identities=20% Similarity=0.460 Sum_probs=61.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++|+++|+||++||++|+.+.|.|.+++++++ ++.++.|.+|. ...+++.|+
T Consensus 23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-----~~~~~~vd~~~-----------------------~~~l~~~~~ 74 (109)
T 3f3q_A 23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-----QADFYKLDVDE-----------------------LGDVAQKNE 74 (109)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTT-----------------------CHHHHHHTT
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----CCEEEEEECCC-----------------------CHHHHHHcC
Confidence 47999999999999999999999999999985 37788887775 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|++++++ +|+++.+
T Consensus 75 v~~~Pt~~~~~-~G~~~~~ 92 (109)
T 3f3q_A 75 VSAMPTLLLFK-NGKEVAK 92 (109)
T ss_dssp CCSSSEEEEEE-TTEEEEE
T ss_pred CCccCEEEEEE-CCEEEEE
Confidence 99999999996 8988876
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=110.52 Aligned_cols=71 Identities=25% Similarity=0.495 Sum_probs=63.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+||++||++|+.+.|.|.+++++++ .++.++.|++|.+ ..+++.|+
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~v~~~~v~~~~~-----------------------~~~~~~~~ 68 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA----DKVTVAKLNVDEN-----------------------PETTSQFG 68 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHST----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCcEEEEEECcCC-----------------------HHHHHHcC
Confidence 56899999999999999999999999999986 4588888888753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 69 v~~~Pt~~~~-~~G~~~~~ 86 (105)
T 1nsw_A 69 IMSIPTLILF-KGGRPVKQ 86 (105)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CccccEEEEE-eCCeEEEE
Confidence 9999999999 89998876
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=110.28 Aligned_cols=86 Identities=14% Similarity=0.238 Sum_probs=61.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+|||+||++|+.+.|.+.+++++++ ++.++.|++|.. ..++++|+
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-----~~~~~~vd~~~~-----------------------~~l~~~~~ 68 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-----YVEKIEILLQDM-----------------------QEIAGRYA 68 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-----TEEEEEEEECCC-------------------------------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-----CceEEEEECCCC-----------------------HHHHHhcC
Confidence 46999999999999999999999999998873 478888888753 57889999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
|.++||++++ ++|+++.+ ..|... .++|.+.+++
T Consensus 69 v~~~Pt~~~~-~~G~~~~~-------~~g~~~-------~~~l~~~l~~ 102 (105)
T 4euy_A 69 VFTGPTVLLF-YNGKEILR-------ESRFIS-------LENLERTIQL 102 (105)
T ss_dssp -CCCCEEEEE-ETTEEEEE-------EESSCC-------HHHHHHHHHT
T ss_pred CCCCCEEEEE-eCCeEEEE-------EeCCcC-------HHHHHHHHHH
Confidence 9999999999 58988876 345443 5556555554
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=125.38 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=98.4
Q ss_pred cchhhhhhccCcce----eecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC
Q 016404 14 SDFLTVLASEGVEF----LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (390)
Q Consensus 14 ~~~~~~~~~~~~~~----l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~ 87 (390)
..+...++..+++| +.+.+++ ++|++++||+++|+|| +.||+.|..+++.|++.+++|++.+ ++|++||.|.
T Consensus 19 ~~M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g--~~vigiS~Ds 96 (216)
T 3sbc_A 19 SHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG--AQVLFASTDS 96 (216)
T ss_dssp ---CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSC
T ss_pred CcchhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC--ceEEEeecCc
Confidence 33445566667776 3467777 9999999999999999 9999999999999999999999988 9999999984
Q ss_pred ChhHHHHHHHhC------CCcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 88 DENGFEEHFKCM------PWLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 88 ~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
..+.++|.+.. .-+.+|+..|.+.++++.||+- ..+.+++||++|+|++..
T Consensus 97 -~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~ 159 (216)
T 3sbc_A 97 -EYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHIT 159 (216)
T ss_dssp -HHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred -hhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEE
Confidence 44455666533 2356777778889999999983 468999999999997643
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=126.34 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=92.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCC-Chhhh-----hhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHH
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANW-CRPCK-----TFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK 97 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~-C~~C~-----~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 97 (390)
.++|.+.+|+ ++|++++||++||+||+.| ||+|. .+++.|.++ + .+ ++|++|+.| +....++|.+
T Consensus 30 dFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~g--v~VvgIS~D-s~~~~~~f~~ 101 (224)
T 3keb_A 30 SFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PH--LKLIVITVD-SPSSLARARH 101 (224)
T ss_dssp CCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TT--SEEEEEESS-CHHHHHHHHH
T ss_pred CeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CC--CEEEEEECC-CHHHHHHHHH
Confidence 4558999999 9999999999999999888 99999 888888877 4 34 889999998 5667889999
Q ss_pred hCCCcceecChhH-HHHHHHhcCcCC---------CCeEEEEcCCCcccccccc
Q 016404 98 CMPWLAVPFDETL-HKKLRIRYRVDR---------IPSLIPLASDGTLIEEDLI 141 (390)
Q Consensus 98 ~~~~~~~~~~~~~-~~~l~~~~~v~~---------~P~~~~~d~~G~i~~~~~~ 141 (390)
+++...+|+..|. ...+++.||+.. .|+.+|||++|+|++....
T Consensus 102 ~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~ 155 (224)
T 3keb_A 102 EHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERL 155 (224)
T ss_dssp HHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEEC
T ss_pred HcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEec
Confidence 8875467886665 589999999864 7999999999999976653
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-16 Score=129.48 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=66.5
Q ss_pred eeecccCCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHH--HHHhhhcCCcccccCCc
Q 016404 195 ITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKE--FDLNHSIMPWLAIPYED 269 (390)
Q Consensus 195 ~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~--~~~~~~~~~~~~~~~~~ 269 (390)
+.++..+||+|+|+|||+||++|+.+.+.+ .++.+.++ .++.++.|++|...+. ............+....
T Consensus 40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~----~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 115 (172)
T 3f9u_A 40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIIN----NDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVG 115 (172)
T ss_dssp HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHH----HHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHH
T ss_pred HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc----CCEEEEEEecCcccccchhhhhhhcchhhhhhhhh
Confidence 444456789999999999999999974444 55555554 3578999988764311 00001111112222222
Q ss_pred hHHHHH-HHHccccccceEEEECCCCcEEee
Q 016404 270 RARQDL-CRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 270 ~~~~~l-~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+....+ .+.|+|.++|+++|||++|+++.+
T Consensus 116 ~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~ 146 (172)
T 3f9u_A 116 DKWSYLQRVKFGANAQPFYVLIDNEGNPLNK 146 (172)
T ss_dssp HHHHHHHHHHHSCCCSSEEEEECTTSCBSSC
T ss_pred hhhhHHHHHHcCCCCcceEEEECCCCCEEee
Confidence 333333 589999999999999999999887
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=126.91 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=89.8
Q ss_pred cceeecCCCccccCccCCC--EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHh----
Q 016404 25 VEFLLSRQGKVPLSSCGGK--TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC---- 98 (390)
Q Consensus 25 ~~~l~~~~g~~~l~~~~gk--~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~---- 98 (390)
.+.+.+.+|.+++++++|| +||++||++||++|..+++.|.+++++|++.+ ++|++|++|.. ++.++|.+.
T Consensus 13 ~F~l~~~~G~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~IS~D~~-~~~~~~~~~i~~~ 89 (224)
T 1prx_A 13 NFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSV-EDHLAWSKDINAY 89 (224)
T ss_dssp CCEEEETTEEEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCH-HHHHHHHHHHHHH
T ss_pred CcEEecCCCCEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEcCCCH-HHHHHHHHHHHHh
Confidence 3458888888999999997 55666689999999999999999999999877 99999999853 445555553
Q ss_pred ------CCCcceecChhHHHHHHHhcCcC------------CCCeEEEEcCCCccccccc
Q 016404 99 ------MPWLAVPFDETLHKKLRIRYRVD------------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 99 ------~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~~~d~~G~i~~~~~ 140 (390)
.. +.+|+..|....+++.||+. .+|+++|+|++|+++....
T Consensus 90 ~~~~~~~~-~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~ 148 (224)
T 1prx_A 90 NSEEPTEK-LPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSIL 148 (224)
T ss_dssp TTSCCCSC-CSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEE
T ss_pred hCcccccC-cCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEe
Confidence 33 56676556667899999984 4799999999999986543
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=129.63 Aligned_cols=164 Identities=10% Similarity=0.071 Sum_probs=100.8
Q ss_pred CCCEEEEEEecCCChhhhhhH------HHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 41 GGKTICLFFSANWCRPCKTFT------PQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~------p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
++++++|+|||+||+||.... |.++++++.++..+ +. ++.+|++.+ ..+
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~--v~--~~~Vd~~~~---------------------~~l 83 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VG--FGLVDSEKD---------------------AAV 83 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTT--EE--EEEEETTTT---------------------HHH
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCC--ce--EEEEeCccc---------------------HHH
Confidence 479999999999999974332 68889998887644 44 445555443 689
Q ss_pred HHhcCcCCCCeEEEEcCCCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCC-C
Q 016404 115 RIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDH-R 193 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g-~ 193 (390)
|++|+|+++||++++. +|+.+... |. .........+..... |... .++. +
T Consensus 84 ~~~~~V~~~PTl~~f~-~G~~~~y~--------G~---~~~~~i~~~i~~~~~----------------~~v~-~i~~~~ 134 (367)
T 3us3_A 84 AKKLGLTEEDSIYVFK-EDEVIEYD--------GE---FSADTLVEFLLDVLE----------------DPVE-LIEGER 134 (367)
T ss_dssp HHHHTCCSTTEEEEEE-TTEEEECC--------SC---CSHHHHHHHHHHHHS----------------CSEE-ECCSHH
T ss_pred HHHcCCCcCceEEEEE-CCcEEEeC--------CC---CCHHHHHHHHHHhcC----------------CCcE-EcCCHH
Confidence 9999999999999996 77653111 11 111122222221111 1111 0100 0
Q ss_pred eee-ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHH
Q 016404 194 KIT-VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR 272 (390)
Q Consensus 194 ~~~-l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (390)
.+. +-....++++|.|+++||. ...+.+.+++..++ .++.+..++ +
T Consensus 135 ~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~----~~~~F~~~~--------------------------~ 181 (367)
T 3us3_A 135 ELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFH----PYIPFFATF--------------------------D 181 (367)
T ss_dssp HHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHT----TTSCEEEEC--------------------------C
T ss_pred HHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhc----CCcEEEEEC--------------------------C
Confidence 000 0000136788889999876 45567888888886 344444432 2
Q ss_pred HHHHHHccccccceEEEECC
Q 016404 273 QDLCRIFNIKGIPALVLIGP 292 (390)
Q Consensus 273 ~~l~~~~~v~~~P~~~lid~ 292 (390)
..+++.|++.. |+++++-+
T Consensus 182 ~~~~~~~~v~~-p~i~lf~~ 200 (367)
T 3us3_A 182 SKVAKKLTLKL-NEIDFYEA 200 (367)
T ss_dssp HHHHHHHTCCT-TCEEEECT
T ss_pred HHHHHHcCCCC-CeEEEEcC
Confidence 56888999985 99999955
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-15 Score=122.50 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=63.5
Q ss_pred ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
+++++|++++|+|||+||++|+.+.|.|.+++++++ ++.++.|+.|. +.+++
T Consensus 49 l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-----~v~~~~v~~d~-----------------------~~~~~ 100 (167)
T 1z6n_A 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----NIELAIISKGR-----------------------AEDDL 100 (167)
T ss_dssp HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----TEEEEEECHHH-----------------------HHHHT
T ss_pred HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----CcEEEEEECCC-----------------------CHHHH
Confidence 456778999999999999999999999999998763 47888887663 34566
Q ss_pred HHcc---ccccceEEEECCCCcEEeeC
Q 016404 277 RIFN---IKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 277 ~~~~---v~~~P~~~lid~~G~v~~~~ 300 (390)
+.|+ +.++||++++|++|+++.+.
T Consensus 101 ~~~~~~~v~~iPt~i~~~~~G~~~~~~ 127 (167)
T 1z6n_A 101 RQRLALERIAIPLVLVLDEEFNLLGRF 127 (167)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred HHHHHcCCCCcCeEEEECCCCCEEEEE
Confidence 6675 99999999999999998763
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-14 Score=108.70 Aligned_cols=71 Identities=30% Similarity=0.577 Sum_probs=62.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++ .++.++.|++|.+ ..+++.|+
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~ 71 (108)
T 2trx_A 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYG 71 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-----------------------TTHHHHTT
T ss_pred cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhC----CCcEEEEEECCCC-----------------------HHHHHHcC
Confidence 46899999999999999999999999999986 4588888887753 56889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|+++++ ++|+++.+
T Consensus 72 v~~~Pt~~~~-~~G~~~~~ 89 (108)
T 2trx_A 72 IRGIPTLLLF-KNGEVAAT 89 (108)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CcccCEEEEE-eCCEEEEE
Confidence 9999999999 89998876
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-14 Score=108.19 Aligned_cols=71 Identities=18% Similarity=0.396 Sum_probs=63.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.+++++++ .++.++.|++|.+ ..+++.|+
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~ 70 (106)
T 3die_A 18 ESGVQLVDFWATACGPCKMIAPVLEELAADYE----GKADILKLDVDEN-----------------------PSTAAKYE 70 (106)
T ss_dssp CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCcEEEEEECCcC-----------------------HHHHHhCC
Confidence 67999999999999999999999999999987 4588888888763 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|+++++ ++|+++.+
T Consensus 71 v~~~Pt~~~~-~~G~~~~~ 88 (106)
T 3die_A 71 VMSIPTLIVF-KDGQPVDK 88 (106)
T ss_dssp CCSBSEEEEE-ETTEEEEE
T ss_pred CcccCEEEEE-eCCeEEEE
Confidence 9999999999 58988876
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=116.52 Aligned_cols=93 Identities=26% Similarity=0.522 Sum_probs=73.4
Q ss_pred ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 199 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 199 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
..+||+++|+||++||++|+.+.|.|.+++++++ ++.++.|++|. +..+++.
T Consensus 43 ~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----~v~~~~v~~~~-----------------------~~~~~~~ 94 (139)
T 3d22_A 43 SRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-----SLMFLVIDVDE-----------------------LSDFSAS 94 (139)
T ss_dssp HHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTT-----------------------SHHHHHH
T ss_pred hhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CCEEEEEeCcc-----------------------cHHHHHH
Confidence 3468999999999999999999999999998874 47888888875 3678999
Q ss_pred ccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCCCC
Q 016404 279 FNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP 335 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p 335 (390)
|+|.++|+++++ ++|+++.+ ..|. . .++|.+.+++....+|
T Consensus 95 ~~v~~~Pt~~~~-~~G~~~~~-------~~G~-~-------~~~l~~~l~~~~~~~~ 135 (139)
T 3d22_A 95 WEIKATPTFFFL-RDGQQVDK-------LVGA-N-------KPELHKKITAILDSLP 135 (139)
T ss_dssp TTCCEESEEEEE-ETTEEEEE-------EESC-C-------HHHHHHHHHHHHHTSC
T ss_pred cCCCcccEEEEE-cCCeEEEE-------EeCC-C-------HHHHHHHHHHHhccCC
Confidence 999999999998 89999876 3443 2 3455555555555555
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=107.14 Aligned_cols=71 Identities=27% Similarity=0.543 Sum_probs=62.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+||++||++|+.+.|.|.+++++++ .++.++.|+.|.+ ..+++.|+
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~ 70 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK----DKLKCVKLNTDES-----------------------PNVASEYG 70 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHHT
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhC----CceEEEEEECCCC-----------------------HHHHHHCC
Confidence 36899999999999999999999999999986 4588888888753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 71 v~~~Pt~~~~-~~G~~~~~ 88 (107)
T 1dby_A 71 IRSIPTIMVF-KGGKKCET 88 (107)
T ss_dssp CCSSCEEEEE-SSSSEEEE
T ss_pred CCcCCEEEEE-eCCEEEEE
Confidence 9999999888 79998876
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=114.46 Aligned_cols=83 Identities=24% Similarity=0.431 Sum_probs=67.9
Q ss_pred eCCCCeeeecc-cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccC
Q 016404 189 SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY 267 (390)
Q Consensus 189 ~~~g~~~~l~~-~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 267 (390)
.++++.+.... -++++++|+||++||++|+.+.|.|.+++++++ .++.++.|++|.+
T Consensus 26 ~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~~~~------------------ 83 (128)
T 2o8v_B 26 HLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQ----GKLTVAKLNIDQN------------------ 83 (128)
T ss_dssp EECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTT----TTEEEEEEETTTC------------------
T ss_pred ecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCeEEEEEECCCC------------------
Confidence 44555554322 257999999999999999999999999999986 4588888888753
Q ss_pred CchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 268 EDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 268 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..+++.|+|.++|+++++ ++|+++.+
T Consensus 84 -----~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 109 (128)
T 2o8v_B 84 -----PGTAPKYGIRGIPTLLLF-KNGEVAAT 109 (128)
T ss_dssp -----CTTSGGGTCCSSSEEEEE-ETTEEEEE
T ss_pred -----HHHHHHcCCCccCEEEEE-eCCEEEEE
Confidence 457789999999999999 89998876
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-14 Score=108.96 Aligned_cols=71 Identities=25% Similarity=0.492 Sum_probs=62.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++ .++.++.|++|.+ ..+++.|+
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~ 74 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG----DKIEIVKLNIDEN-----------------------PGTAAKYG 74 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhc----CCeEEEEEEcCCC-----------------------HHHHHhCC
Confidence 46899999999999999999999999999986 4588888888753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 75 v~~~Pt~~~~-~~G~~~~~ 92 (112)
T 1t00_A 75 VMSIPTLNVY-QGGEVAKT 92 (112)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-eCCEEEEE
Confidence 9999998888 79998876
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=116.90 Aligned_cols=69 Identities=26% Similarity=0.377 Sum_probs=60.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++|||+|||+||++|+.+.|.|.+++++|+ ..+.++.|++|.. ..+++.|+
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~ 74 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS----KMAAIYLVDVDQT-----------------------AVYTQYFD 74 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTT----TTEEEEEEETTTC-----------------------CHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc----CceEEEEEECCcC-----------------------HHHHHHcC
Confidence 46899999999999999999999999999886 4588888888753 67899999
Q ss_pred ccccceEEEECCCCcEE
Q 016404 281 IKGIPALVLIGPDGKTI 297 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~ 297 (390)
|.++||+++ +++|+++
T Consensus 75 v~~~Pt~~~-~~~G~~v 90 (149)
T 3gix_A 75 ISYIPSTVF-FFNGQHM 90 (149)
T ss_dssp CCSSSEEEE-EETTEEE
T ss_pred CCccCeEEE-EECCeEE
Confidence 999999995 4789888
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=126.64 Aligned_cols=111 Identities=11% Similarity=0.116 Sum_probs=87.9
Q ss_pred ceeecC--CCccccCccCCC-E-EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHH----
Q 016404 26 EFLLSR--QGKVPLSSCGGK-T-ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK---- 97 (390)
Q Consensus 26 ~~l~~~--~g~~~l~~~~gk-~-vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---- 97 (390)
+.+.+. +|.+++++++|| + ||++||++||++|..+++.|.+++++|++.+ ++|++|++|.. .+.++|.+
T Consensus 12 F~l~~~~~~G~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~vS~D~~-~~~~~~~~~i~~ 88 (220)
T 1xcc_A 12 FTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSK-ESHDKWIEDIKY 88 (220)
T ss_dssp CEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HHHHHHHHHHHH
T ss_pred cEeecccCCCcEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCH-HHHHHHHHHHHH
Confidence 347777 777999999998 4 4555689999999999999999999999877 99999999853 34455554
Q ss_pred ---hCCCcceecChhHHHHHHHhcCcC------------CCCeEEEEcCCCccccccc
Q 016404 98 ---CMPWLAVPFDETLHKKLRIRYRVD------------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 98 ---~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~~~d~~G~i~~~~~ 140 (390)
+.. +.+|+..|....+++.||+. .+|+++|||++|+++....
T Consensus 89 ~~~~~~-~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~ 145 (220)
T 1xcc_A 89 YGKLNK-WEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVL 145 (220)
T ss_dssp HHTCSC-CCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEE
T ss_pred HhcCCC-CcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEe
Confidence 233 56677566668899999983 4799999999999986553
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-14 Score=108.57 Aligned_cols=72 Identities=14% Similarity=0.342 Sum_probs=60.8
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.++++++|+||++||++|+.+.|.|.+++++++ ++.++.|+++.. +..++++|
T Consensus 22 ~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~----------------------~~~~~~~~ 74 (111)
T 2pu9_C 22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-----DVIFLKLDCNQE----------------------NKTLAKEL 74 (111)
T ss_dssp CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSST----------------------THHHHHHH
T ss_pred cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-----CeEEEEEecCcc----------------------hHHHHHHc
Confidence 357999999999999999999999999999885 377888877632 36889999
Q ss_pred cccccceEEEECCCCcEEee
Q 016404 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|.++|+++ ++++|+++.+
T Consensus 75 ~v~~~Pt~~-~~~~G~~~~~ 93 (111)
T 2pu9_C 75 GIRVVPTFK-ILKENSVVGE 93 (111)
T ss_dssp CCSBSSEEE-EESSSSEEEE
T ss_pred CCCeeeEEE-EEeCCcEEEE
Confidence 999999955 5599998876
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-14 Score=109.74 Aligned_cols=71 Identities=18% Similarity=0.483 Sum_probs=63.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.++++||+||++||++|+.+.|.|.++++++. .++.++.|++|. +..++++|+
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~----~~v~~~~vd~d~-----------------------~~~l~~~~~ 82 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQH----GKVVMAKVDIDD-----------------------HTDLAIEYE 82 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TSSEEEEEETTT-----------------------THHHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEeCCC-----------------------CHHHHHHcC
Confidence 46899999999999999999999999999886 458888888875 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 83 v~~~Pt~~~~-~~G~~~~~ 100 (119)
T 1w4v_A 83 VSAVPTVLAM-KNGDVVDK 100 (119)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-eCCcEEEE
Confidence 9999999999 89998876
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-14 Score=112.23 Aligned_cols=72 Identities=22% Similarity=0.443 Sum_probs=62.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+||++||++|+.+.|.|.+++++++ ..+.++.|++|. +..+++.|+
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~-----------------------~~~l~~~~~ 86 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALK----DVVKVGAVNADK-----------------------HQSLGGQYG 86 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTT----TTSEEEEEETTT-----------------------CHHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhc----CceEEEEEeCCC-----------------------CHHHHHHcC
Confidence 46899999999999999999999999999986 457888888775 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|++++++++|+++.+
T Consensus 87 v~~~Pt~~~~~~~~~~~~~ 105 (130)
T 2dml_A 87 VQGFPTIKIFGANKNKPED 105 (130)
T ss_dssp CCSSSEEEEESSCTTSCEE
T ss_pred CCccCEEEEEeCCCCeEEE
Confidence 9999999999988874433
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-14 Score=128.55 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=89.4
Q ss_pred ceeecCCCcccc-Ccc--CCCEE-EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHh---
Q 016404 26 EFLLSRQGKVPL-SSC--GGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--- 98 (390)
Q Consensus 26 ~~l~~~~g~~~l-~~~--~gk~v-ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--- 98 (390)
+++.+.+|.+++ +++ +||++ |++||++||++|..+++.|.+++++|++.+ ++|++|++|.. .+..+|.+.
T Consensus 14 F~l~~~~G~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g--v~VI~VS~Ds~-~~~~~w~~~~~~ 90 (249)
T 3a2v_A 14 MEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSV-FSHIKWKEWIER 90 (249)
T ss_dssp EEEEETTEEEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCH-HHHHHHHHHHHH
T ss_pred eEEEcCCCCEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC--cEEEEEECCCH-HHHHHHHHHHHH
Confidence 447788888999 999 99965 557899999999999999999999999877 99999999853 333344432
Q ss_pred C-C-CcceecChhHHHHHHHhcCcC-------CCCeEEEEcCCCccccccc
Q 016404 99 M-P-WLAVPFDETLHKKLRIRYRVD-------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 99 ~-~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~~~d~~G~i~~~~~ 140 (390)
. . -+.+|+..|....+++.||+. ++|+++|||++|+++....
T Consensus 91 ~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~ 141 (249)
T 3a2v_A 91 HIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY 141 (249)
T ss_dssp HTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEE
T ss_pred hcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEe
Confidence 1 1 255666666678899999997 8999999999999986543
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=110.15 Aligned_cols=85 Identities=8% Similarity=0.125 Sum_probs=67.2
Q ss_pred eCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcc-cCCceEEEEEecCCCHHHHHHhhhcCCccccc
Q 016404 189 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 266 (390)
Q Consensus 189 ~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 266 (390)
.++++.+..... .+++++|+|||+||++|+.+.|.+.++++.+... ...++.++.|.++.
T Consensus 19 ~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~------------------ 80 (127)
T 3h79_A 19 ELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK------------------ 80 (127)
T ss_dssp ECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT------------------
T ss_pred ECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc------------------
Confidence 556665554433 4799999999999999999999999999988631 23567788877765
Q ss_pred CCchHHHHHHHHccccccceEEEECCCCcE
Q 016404 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKT 296 (390)
Q Consensus 267 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v 296 (390)
+..++++|+|.++||++++++++++
T Consensus 81 -----~~~l~~~~~v~~~Pt~~~~~~g~~~ 105 (127)
T 3h79_A 81 -----YPDVIERMRVSGFPTMRYYTRIDKQ 105 (127)
T ss_dssp -----CHHHHHHTTCCSSSEEEEECSSCSS
T ss_pred -----cHhHHHhcCCccCCEEEEEeCCCCC
Confidence 3689999999999999999766653
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=105.66 Aligned_cols=71 Identities=30% Similarity=0.549 Sum_probs=63.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.+++++++ .++.++.|+++.. ..+++.|+
T Consensus 19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~ 71 (107)
T 2i4a_A 19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA----GKVTVAKVNIDDN-----------------------PETPNAYQ 71 (107)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHT----TSEEEEEEETTTC-----------------------CHHHHHTT
T ss_pred CCCEEEEEEECCCChhHHHHhHHHHHHHHHhC----CcEEEEEEECCCC-----------------------HHHHHhcC
Confidence 56899999999999999999999999999986 4688888888753 57889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 72 v~~~Pt~~~~-~~G~~~~~ 89 (107)
T 2i4a_A 72 VRSIPTLMLV-RDGKVIDK 89 (107)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCccCEEEEE-eCCEEEEE
Confidence 9999999999 89998876
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.2e-14 Score=115.08 Aligned_cols=71 Identities=24% Similarity=0.491 Sum_probs=63.3
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.++++||+||++||++|+.+.|.|++++++|+ .++.++.|++|.+ ..++++|+
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~ 115 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLA----GQVRLAKIDTQAH-----------------------PAVAGRHR 115 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEETTTS-----------------------THHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHcc----CCEEEEEEeCCcc-----------------------HHHHHHcC
Confidence 57899999999999999999999999999997 4588888888753 57899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 116 i~~~Pt~~~~-~~G~~~~~ 133 (155)
T 2ppt_A 116 IQGIPAFILF-HKGRELAR 133 (155)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcCCEEEEE-eCCeEEEE
Confidence 9999999999 79998876
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=107.29 Aligned_cols=71 Identities=24% Similarity=0.546 Sum_probs=63.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++ .++.++.|++|.. ..+++.|+
T Consensus 24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~v~~~~v~~~~~-----------------------~~~~~~~~ 76 (115)
T 1thx_A 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYS----DRLKVVKLEIDPN-----------------------PTTVKKYK 76 (115)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEESTTC-----------------------HHHHHHTT
T ss_pred CCceEEEEEECCCCHHHHHhHHHHHHHHHHhC----CcEEEEEEEcCCC-----------------------HHHHHHcC
Confidence 56899999999999999999999999999987 4588999888753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 77 v~~~Pt~~~~-~~G~~~~~ 94 (115)
T 1thx_A 77 VEGVPALRLV-KGEQILDS 94 (115)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCceeEEEEE-cCCEEEEE
Confidence 9999999999 89998876
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-15 Score=121.06 Aligned_cols=83 Identities=25% Similarity=0.518 Sum_probs=67.6
Q ss_pred CCeeeecccCCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 192 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 192 g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
.+.+.+...+||++||+||++||++|+.+.|.+ .++.+.++ .++.++.|+++.+.
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~------------------ 66 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE----ARFVVASVSVDTPE------------------ 66 (130)
Confidence 556777777889999999999999999999999 88887775 45667777665332
Q ss_pred chHHHHHHHHccccccceEEEECC-CCcE--Eee
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGP-DGKT--IST 299 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~-~G~v--~~~ 299 (390)
...+++.|+|.++|+++++|+ +|++ +.+
T Consensus 67 ---~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~ 97 (130)
T 2lst_A 67 ---GQELARRYRVPGTPTFVFLVPKAGAWEEVGR 97 (130)
Confidence 467889999999999999996 5887 655
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=107.14 Aligned_cols=71 Identities=24% Similarity=0.478 Sum_probs=62.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.+++++++ .++.++.|++|.. ..++++|+
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~ 73 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYE----ESFGFYYVDVEEE-----------------------KTLFQRFS 73 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcC----CceEEEEEECCcC-----------------------hhHHHhcC
Confidence 45899999999999999999999999999986 4688888888753 67899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 74 v~~~Pt~~~~-~~g~~~~~ 91 (111)
T 3gnj_A 74 LKGVPQILYF-KDGEYKGK 91 (111)
T ss_dssp CCSSCEEEEE-ETTEEEEE
T ss_pred CCcCCEEEEE-ECCEEEEE
Confidence 9999999999 78888765
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-14 Score=116.31 Aligned_cols=69 Identities=10% Similarity=0.258 Sum_probs=58.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++|||+|||+||+||+.+.|.|.++++++.+. +.++-|++|.. .+++.+|+|
T Consensus 40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~-----------------------~e~a~~y~V 93 (160)
T 2av4_A 40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEV-----------------------PDFNTMYEL 93 (160)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC-----------------------CTTTTTTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 4789999999999999999999999999999765 55666666533 478899999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++||+++|. +|+.+
T Consensus 94 ~siPT~~fFk-~G~~v 108 (160)
T 2av4_A 94 YDPVSVMFFY-RNKHM 108 (160)
T ss_dssp CSSEEEEEEE-TTEEE
T ss_pred CCCCEEEEEE-CCEEE
Confidence 9999999995 77765
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=107.38 Aligned_cols=72 Identities=22% Similarity=0.579 Sum_probs=61.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++. .++.++.|++|.. ..+++.|+
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~~vd~~~~-----------------------~~~~~~~~ 73 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN---SNVSFLSIDADEN-----------------------SEISELFE 73 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGG---TTSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC---CCEEEEEEecccC-----------------------HHHHHHcC
Confidence 368999999999999999999999999998753 5688888888753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 74 v~~~Pt~~~~-~~G~~~~~ 91 (112)
T 3d6i_A 74 ISAVPYFIII-HKGTILKE 91 (112)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-ECCEEEEE
Confidence 9999999999 79998876
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=109.45 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=64.4
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
.++++.+. ..+++ .++|+||++||++|+.+.|.|.++++++++ .++.++.|++|..
T Consensus 11 ~l~~~~f~-~~~~~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~---~~v~~~~vd~~~~------------------- 66 (126)
T 1x5e_A 11 VITDENWR-ELLEG-DWMIEFYAPWCPACQNLQPEWESFAEWGED---LEVNIAKVDVTEQ------------------- 66 (126)
T ss_dssp ECCTTTHH-HHTSS-EEEEEEECSSCHHHHHHHHHHHHHHHHHGG---GTCEEEEEETTTC-------------------
T ss_pred EecHHHHH-HHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHHhcc---CCeEEEEEECcCC-------------------
Confidence 44444444 22344 489999999999999999999999999874 4788888888753
Q ss_pred chHHHHHHHHccccccceEEEECCCCcEE
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
..++++|+|.++|+++++ ++|++.
T Consensus 67 ----~~~~~~~~v~~~Pt~~~~-~~G~~~ 90 (126)
T 1x5e_A 67 ----PGLSGRFIINALPTIYHC-KDGEFR 90 (126)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred ----HHHHHHcCCcccCEEEEE-eCCeEE
Confidence 678999999999999999 888863
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=108.19 Aligned_cols=70 Identities=21% Similarity=0.511 Sum_probs=61.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|. +..++++|+
T Consensus 37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----~v~~~~vd~d~-----------------------~~~l~~~~~ 88 (124)
T 1xfl_A 37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDTDE-----------------------LKSVASDWA 88 (124)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTT-----------------------SHHHHHHTT
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CcEEEEEECcc-----------------------CHHHHHHcC
Confidence 57999999999999999999999999998874 47788877764 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 89 v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1xfl_A 89 IQAMPTFMFL-KEGKILDK 106 (124)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCccCEEEEE-ECCEEEEE
Confidence 9999998888 89998876
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=110.38 Aligned_cols=84 Identities=19% Similarity=0.399 Sum_probs=66.3
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
.++++.+.....+++++||+||++||++|+.+.|.|.+++++++. ...++.++.|.++.
T Consensus 21 ~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~v~~~~vd~~~-------------------- 79 (140)
T 2dj1_A 21 VLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKD-NDPPIAVAKIDATS-------------------- 79 (140)
T ss_dssp ECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHS-SSSCCEEEEECTTT--------------------
T ss_pred EcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc-cCCceEEEEEeCcc--------------------
Confidence 555555554444679999999999999999999999999999975 22246666666554
Q ss_pred chHHHHHHHHccccccceEEEECCCCcEE
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
+..+++.|+|.++|+++++ ++|++.
T Consensus 80 ---~~~~~~~~~v~~~Pt~~~~-~~G~~~ 104 (140)
T 2dj1_A 80 ---ASMLASKFDVSGYPTIKIL-KKGQAV 104 (140)
T ss_dssp ---CHHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred ---cHHHHHHCCCCccCeEEEE-ECCcEE
Confidence 3678999999999999999 788843
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-14 Score=118.27 Aligned_cols=104 Identities=9% Similarity=0.147 Sum_probs=74.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHH--HhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYN--ELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~--~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
.||+|+|+|||+||++|+.+.|.+.+..+ ++. +..++.|.+|.+. ..++..
T Consensus 43 ~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~-----~~~fv~V~vD~e~----------------------~~~~~~ 95 (151)
T 3ph9_A 43 SKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMA-----QNKFIMLNLMHET----------------------TDKNLS 95 (151)
T ss_dssp HTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHH-----HHTCEEEEESSCC----------------------SCGGGC
T ss_pred cCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHh-----hcCeEEEEecCCc----------------------hhhHhh
Confidence 47999999999999999999998876422 221 1236777776431 223457
Q ss_pred ccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcCCCC
Q 016404 279 FNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP 335 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~~~p 335 (390)
|++.++||++++|++|+++.+. ....+...|++......++.+.+++..+.+.
T Consensus 96 ~~v~~~PT~~f~~~~G~~v~~~----~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~ 148 (151)
T 3ph9_A 96 PDGQYVPRIMFVDPSLTVRADI----AGRYSNRLYTYEPRDLPLLIENMKKALRLIQ 148 (151)
T ss_dssp TTCCCSSEEEEECTTSCBCTTC----CCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC
T ss_pred cCCCCCCEEEEECCCCCEEEEE----eCCcCCcccccchhhHHHHHHHHHHHHHHHh
Confidence 8999999999999999998862 1123345566777778888888887666543
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-14 Score=119.37 Aligned_cols=94 Identities=20% Similarity=0.449 Sum_probs=72.2
Q ss_pred cCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 30 ~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
+..|+ ++++..+||+++|+|| ++||++|+.+.|.| .++.+.+... +.++.|+++.+.+ +
T Consensus 34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~---~~~v~vd~~~~~~-------------~ 97 (154)
T 2ju5_A 34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVH---LHMVEVDFPQKNH-------------Q 97 (154)
T ss_dssp ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEECCSSCC-------------C
T ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCc---EEEEEecCccccC-------------C
Confidence 44466 8888889999999999 99999999999999 7776655443 6666666654331 1
Q ss_pred ec-ChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 105 PF-DETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 105 ~~-~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
++ ..+....+++.|++.++|+++++|++|+++.+.
T Consensus 98 ~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~ 133 (154)
T 2ju5_A 98 PEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARM 133 (154)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred ChhhHhhHHHHHHHcCCCCCCEEEEEcCCCCEEEEe
Confidence 11 234557899999999999999999999988643
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-14 Score=121.17 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=96.2
Q ss_pred hhccCcce-----eecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHH
Q 016404 20 LASEGVEF-----LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF 92 (390)
Q Consensus 20 ~~~~~~~~-----l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 92 (390)
++..+++| |.|.+|+ ++|++++||++||+|| +.||+.|..++..|.+++++|++.+ ++|++||.|. ..+.
T Consensus 28 vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g--~~vigiS~Ds-~~sh 104 (219)
T 3tue_A 28 INSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN--CEVLACSIDS-EYAH 104 (219)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT--EEEEEEESSC-HHHH
T ss_pred cCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC--cEEEEeeCCc-hhhH
Confidence 55566666 5688888 9999999999999999 8999999999999999999999988 9999999994 4456
Q ss_pred HHHHHhC------CCcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccc
Q 016404 93 EEHFKCM------PWLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 93 ~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~ 138 (390)
++|..+. ..+.+|+..|...++++.||+- ....+++||++|+|...
T Consensus 105 ~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~ 162 (219)
T 3tue_A 105 LQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQI 162 (219)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEE
Confidence 6666543 2356677778889999999983 34689999999998753
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=115.82 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=102.2
Q ss_pred hhccCCceEE-e--C---------CC----Ceeeecc-cCCcEEEEEEc-cCCCcccH-hhHHHHHHHHHHh-hcccCCc
Q 016404 179 LAIEGRDYVL-S--R---------DH----RKITVSE-LAGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNEL-KTTANHC 238 (390)
Q Consensus 179 ~g~~~p~f~l-~--~---------~g----~~~~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~-~~~~~~~ 238 (390)
+|+++|+|++ + . +| +.+++++ ++||++||+|| +.|||.|. .+++.+++.+++| ++ .+
T Consensus 3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~---~g 79 (182)
T 1xiy_A 3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKE---NN 79 (182)
T ss_dssp TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT---SC
T ss_pred CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHh---CC
Confidence 5889999999 6 3 67 7999998 69998888776 78999999 9999999999999 86 78
Q ss_pred eE-EEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc-----------ccceEEEECCCCcEEeeCcchhhh
Q 016404 239 FE-VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTNGKEMIS 306 (390)
Q Consensus 239 ~~-vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~g~~~~~ 306 (390)
++ |++||.|.. ....++....+...+|+..|.+..+++.||+. ..+.++||| +|+|++..-.. ..
T Consensus 80 ~~~V~gvS~D~~-~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~~-~~ 156 (182)
T 1xiy_A 80 FDDIYCITNNDI-YVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEK-DK 156 (182)
T ss_dssp CSEEEEEESSCH-HHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECS-SC
T ss_pred CcEEEEEeCCCH-HHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEeC-Cc
Confidence 84 999999963 33333333333225888888899999999973 257789998 99999874100 00
Q ss_pred hcCccCCCCChhhHHHHHHHHH
Q 016404 307 LYGAKAFPFTESRIAEIETALK 328 (390)
Q Consensus 307 ~~g~~~~p~~~~~~~~l~~~~~ 328 (390)
..+...-+......+++.+.++
T Consensus 157 ~~~~~~~~~~~~~~~~vL~~L~ 178 (182)
T 1xiy_A 157 QHNIQTDPYDISTVNNVKEFLK 178 (182)
T ss_dssp CTTCSSCCCSTTSHHHHHHHHH
T ss_pred ccccccCcccCCCHHHHHHHHH
Confidence 0000111233456777777665
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-14 Score=114.91 Aligned_cols=86 Identities=19% Similarity=0.315 Sum_probs=70.3
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
+.+.++- ..+++.+||+++|+||++||++|+.+.|.+ .++++.+++ +.++.|+++...
T Consensus 16 ~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~----~~~~~vd~~~~~-------------- 77 (134)
T 2fwh_A 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD----TVLLQANVTAND-------------- 77 (134)
T ss_dssp CCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT----SEEEEEECTTCC--------------
T ss_pred ecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC----cEEEEEeCCCCc--------------
Confidence 3344444 677777899999999999999999999998 888888753 678888876432
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
+....++++|++.++|+++++|++|+++
T Consensus 78 -----~~~~~l~~~~~v~~~Pt~~~~d~~G~~v 105 (134)
T 2fwh_A 78 -----AQDVALLKHLNVLGLPTILFFDGQGQEH 105 (134)
T ss_dssp -----HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred -----chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence 2247899999999999999999999986
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.6e-14 Score=110.84 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=64.5
Q ss_pred eeecCCCc-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhC--CCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 27 FLLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR--GTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 27 ~l~~~~g~-~~l~~~-~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+..++++ +..... .+++++|+||++||++|+.+.|.|.++++.+... ...+.++.|++| .+
T Consensus 16 ~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~--~~------------ 81 (127)
T 3h79_A 16 RVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE--KY------------ 81 (127)
T ss_dssp CCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT--TC------------
T ss_pred ceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc--cc------------
Confidence 35566666 543333 4899999999999999999999999999988632 223555555544 33
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcCCCc
Q 016404 103 AVPFDETLHKKLRIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~ 134 (390)
..++++|+|.++|++++++++++
T Consensus 82 ---------~~l~~~~~v~~~Pt~~~~~~g~~ 104 (127)
T 3h79_A 82 ---------PDVIERMRVSGFPTMRYYTRIDK 104 (127)
T ss_dssp ---------HHHHHHTTCCSSSEEEEECSSCS
T ss_pred ---------HhHHHhcCCccCCEEEEEeCCCC
Confidence 68999999999999999975554
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=105.89 Aligned_cols=70 Identities=21% Similarity=0.398 Sum_probs=61.8
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.|.+++++++ .++.++.|++|. +..+++.|+|
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~-----------------------~~~~~~~~~v 76 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYA----GKVIFLKVDVDA-----------------------VAAVAEAAGI 76 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTT-----------------------THHHHHHHTC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC----CCeEEEEEECCc-----------------------hHHHHHHcCC
Confidence 6899999999999999999999999999986 468888888875 3678999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|+++++ ++|+++.+
T Consensus 77 ~~~Pt~~~~-~~G~~~~~ 93 (112)
T 1ep7_A 77 TAMPTFHVY-KDGVKADD 93 (112)
T ss_dssp CBSSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-ECCeEEEE
Confidence 999998887 89998876
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=105.76 Aligned_cols=87 Identities=24% Similarity=0.487 Sum_probs=71.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.++.++++ .++.++.|++|.+ ..+++.|+
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~ 69 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE----GKLLVAKLDVDEN-----------------------PKTAMRYR 69 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTB----TTBEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh----CceEEEEEECCCC-----------------------HhHHHhCC
Confidence 46899999999999999999999999999986 4588888888753 67899999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
+.++|+++++ ++|+++.+ ..|... .+++.+.+++
T Consensus 70 v~~~Pt~~~~-~~g~~~~~-------~~g~~~-------~~~l~~~l~~ 103 (109)
T 2yzu_A 70 VMSIPTVILF-KDGQPVEV-------LVGAQP-------KRNYQAKIEK 103 (109)
T ss_dssp CCSSSEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHT
T ss_pred CCcCCEEEEE-eCCcEeee-------EeCCCC-------HHHHHHHHHH
Confidence 9999999999 89998876 345443 4556555554
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=104.54 Aligned_cols=70 Identities=20% Similarity=0.451 Sum_probs=61.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.+++++++ ++.++.|+.|. ...+++.|+
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~~~~~vd~~~-----------------------~~~~~~~~~ 70 (105)
T 3m9j_A 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDVDD-----------------------CQDVASESE 70 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHST-----TSEEEEEETTT-----------------------CHHHHHHTT
T ss_pred CCCeEEEEEECCCChhhHHHHHHHHHHHHHcc-----CeEEEEEEhhh-----------------------hHHHHHHcC
Confidence 57899999999999999999999999999885 37788887765 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|+++++ ++|+++.+
T Consensus 71 v~~~Pt~~~~-~~g~~~~~ 88 (105)
T 3m9j_A 71 VKSMPTFQFF-KKGQKVGE 88 (105)
T ss_dssp CCBSSEEEEE-ETTEEEEE
T ss_pred CCcCcEEEEE-ECCeEEEE
Confidence 9999999999 78888766
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=104.91 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=61.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. ..+++.|+
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-----~~~~~~vd~~~~-----------------------~~~~~~~~ 71 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----QAVFLEVDVHQC-----------------------QGTAATNN 71 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-----CcEEEEEECccC-----------------------HHHHHhcC
Confidence 46899999999999999999999999999873 477888887753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+++.+
T Consensus 72 v~~~Pt~~~~-~~G~~~~~ 89 (107)
T 1gh2_A 72 ISATPTFQFF-RNKVRIDQ 89 (107)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-ECCeEEEE
Confidence 9999999999 78888766
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=112.31 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=62.3
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
-++++++|+|||+||++|+.+.|.|.+++++|+. .++.++.|.++. +..++++|
T Consensus 24 ~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~-----------------------~~~~~~~~ 77 (137)
T 2dj0_A 24 DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC---TGLNFGKVDVGR-----------------------YTDVSTRY 77 (137)
T ss_dssp STTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS---SSCEEEECCTTT-----------------------CHHHHHHT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCcc-----------------------CHHHHHHc
Confidence 3457999999999999999999999999999974 467777777664 36788899
Q ss_pred ccc------ccceEEEECCCCcEEee
Q 016404 280 NIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~------~~P~~~lid~~G~v~~~ 299 (390)
+|. ++||++++ ++|+++.+
T Consensus 78 ~v~~~~~~~~~Pt~~~~-~~G~~~~~ 102 (137)
T 2dj0_A 78 KVSTSPLTKQLPTLILF-QGGKEAMR 102 (137)
T ss_dssp TCCCCSSSSCSSEEEEE-SSSSEEEE
T ss_pred cCcccCCcCCCCEEEEE-ECCEEEEE
Confidence 998 99999999 78998876
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=110.76 Aligned_cols=71 Identities=14% Similarity=0.283 Sum_probs=62.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.++++||+||++||++|+.+.|.|.+++++++ .++.++.|.+|.. ..+++.|+
T Consensus 23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~ 75 (140)
T 3hz4_A 23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYG----SSAVFGRINIATN-----------------------PWTAEKYG 75 (140)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTSEEEEEETTTC-----------------------HHHHHHHT
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEECCcC-----------------------HhHHHHCC
Confidence 36899999999999999999999999999997 4588888888753 67899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 76 v~~~Pt~~~~-~~G~~~~~ 93 (140)
T 3hz4_A 76 VQGTPTFKFF-CHGRPVWE 93 (140)
T ss_dssp CCEESEEEEE-ETTEEEEE
T ss_pred CCcCCEEEEE-eCCcEEEE
Confidence 9999999999 78888766
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=104.70 Aligned_cols=70 Identities=17% Similarity=0.491 Sum_probs=62.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.+++++++ . +.++.|++|.. ..+++.|+
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~-~~~~~v~~~~~-----------------------~~~~~~~~ 66 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYP----Q-VGFGKLNSDEN-----------------------PDIAARYG 66 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----T-SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcC----C-ceEEEEECCCC-----------------------HHHHHhCC
Confidence 56899999999999999999999999998885 3 78888888753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|+++++ ++|+++.+
T Consensus 67 v~~~Pt~~~~-~~g~~~~~ 84 (104)
T 2e0q_A 67 VMSLPTVIFF-KDGEPVDE 84 (104)
T ss_dssp CCSSCEEEEE-ETTEEEEE
T ss_pred ccccCEEEEE-ECCeEhhh
Confidence 9999999999 89998876
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=109.00 Aligned_cols=75 Identities=19% Similarity=0.390 Sum_probs=61.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+||++||++|+.+.|.|.+++++++.....++.++.|+++. +..+++.|+
T Consensus 24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~l~~~~~ 80 (133)
T 1x5d_A 24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV-----------------------NQVLASRYG 80 (133)
T ss_dssp SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT-----------------------CCHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC-----------------------CHHHHHhCC
Confidence 468999999999999999999999999999862122457788877764 367889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++++ |+++.+
T Consensus 81 v~~~Pt~~~~~~-g~~~~~ 98 (133)
T 1x5d_A 81 IRGFPTIKIFQK-GESPVD 98 (133)
T ss_dssp CCSSSEEEEEET-TEEEEE
T ss_pred CCeeCeEEEEeC-CCceEE
Confidence 999999999976 776655
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.1e-14 Score=116.44 Aligned_cols=116 Identities=12% Similarity=0.204 Sum_probs=93.7
Q ss_pred hhccCCceEEeCCC--Ceeeecc-cCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceE-EEEEecCCC--HH
Q 016404 179 LAIEGRDYVLSRDH--RKITVSE-LAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFE-VVLVSTDRD--HK 251 (390)
Q Consensus 179 ~g~~~p~f~l~~~g--~~~~l~~-~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~-vv~v~~d~~--~~ 251 (390)
+|+++|+|++..+| +.+++++ ++||++||+|| +.|||.|..+++.+++.+++|++ .+++ |++||.|.. ..
T Consensus 16 vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~---~gv~~VigIS~D~~~~~~ 92 (171)
T 2xhf_A 16 VGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKE---EGYHTIACIAVNDPFVMA 92 (171)
T ss_dssp TTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHH---TTCCEEEEEESSCHHHHH
T ss_pred CcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCCEEEEEeCCCHHHHH
Confidence 59999999994444 8999999 49999888887 57999999999999999999987 7885 999999963 23
Q ss_pred HHHHhhhcCCcccccCCchHHHHHHHHcccc-----------ccceEEEECCCCcEEeeC
Q 016404 252 EFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~ 300 (390)
+|.+..... ..+|+..|.+.++++.||+. ....++||| +|+|++..
T Consensus 93 ~w~~~~~~~--~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~ 149 (171)
T 2xhf_A 93 AWGKTVDPE--HKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVS 149 (171)
T ss_dssp HHHHHHCTT--CCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred HHHHhcCCC--CCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEE
Confidence 454443311 26788888899999999973 246789998 99999873
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=105.16 Aligned_cols=89 Identities=18% Similarity=0.421 Sum_probs=69.8
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.+.++++++.. ...++.++.|+++.. ..+++.|+|
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~~vd~~~~-----------------------~~l~~~~~v 76 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFP-GLAGVKIAEVDCTAE-----------------------RNICSKYSV 76 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCC-C-CCEEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhc-cCCceEEEEEecccc-----------------------HhHHHhcCC
Confidence 68999999999999999999999999988764 224677888877753 678999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
.++|+++++ ++|+++.+ ..|... .+.|.+.+++
T Consensus 77 ~~~Pt~~~~-~~g~~~~~-------~~g~~~-------~~~l~~~l~~ 109 (111)
T 3uvt_A 77 RGYPTLLLF-RGGKKVSE-------HSGGRD-------LDSLHRFVLS 109 (111)
T ss_dssp CSSSEEEEE-ETTEEEEE-------ECSCCS-------HHHHHHHHHH
T ss_pred CcccEEEEE-eCCcEEEe-------ccCCcC-------HHHHHHHHHh
Confidence 999999999 78887766 345443 5556555554
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=111.43 Aligned_cols=83 Identities=24% Similarity=0.411 Sum_probs=67.9
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHH--HHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLV--QLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHK 112 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~--~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (390)
+.....+||+++|+||++||++|+.+.|.|. ++.+.++++ +.++.|+++... ...
T Consensus 22 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~~--------------------~~~ 78 (133)
T 3fk8_A 22 LAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNFD--------------------RNL 78 (133)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTTT--------------------SSH
T ss_pred HHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCccc--------------------chH
Confidence 3344456999999999999999999999999 999988754 778888774211 126
Q ss_pred HHHHhcCc---CCCCeEEEEcCCCccccccc
Q 016404 113 KLRIRYRV---DRIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 113 ~l~~~~~v---~~~P~~~~~d~~G~i~~~~~ 140 (390)
.++++|++ .++|+++++|++|+++.+..
T Consensus 79 ~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~ 109 (133)
T 3fk8_A 79 ELSQAYGDPIQDGIPAVVVVNSDGKVRYTTK 109 (133)
T ss_dssp HHHHHTTCGGGGCSSEEEEECTTSCEEEECC
T ss_pred HHHHHhCCccCCccceEEEECCCCCEEEEec
Confidence 89999999 99999999999999886644
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.5e-14 Score=111.88 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=57.8
Q ss_pred ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
+++.+||++||+||++||++|+.+.|.|.++++++ ++.++.|.+|. +..++
T Consensus 35 l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~------~v~~~~vd~~~-----------------------~~~l~ 85 (133)
T 3cxg_A 35 FSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY------YVTLVDIDVDI-----------------------HPKLN 85 (133)
T ss_dssp HTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE------ECEEEEEETTT-----------------------CHHHH
T ss_pred HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc------CEEEEEEeccc-----------------------hHHHH
Confidence 45556899999999999999999999998876554 24566665553 36789
Q ss_pred HHccccccceEEEE-CCCCc--EEee
Q 016404 277 RIFNIKGIPALVLI-GPDGK--TIST 299 (390)
Q Consensus 277 ~~~~v~~~P~~~li-d~~G~--v~~~ 299 (390)
+.|+|.++|+++++ +++|+ ++.+
T Consensus 86 ~~~~v~~~Pt~~~~~~~~g~g~~~~~ 111 (133)
T 3cxg_A 86 DQHNIKALPTFEFYFNLNNEWVLVHT 111 (133)
T ss_dssp HHTTCCSSSEEEEEEEETTEEEEEEE
T ss_pred HhcCCCCCCEEEEEEecCCCeEEEEE
Confidence 99999999999999 44565 7766
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=111.05 Aligned_cols=83 Identities=12% Similarity=0.271 Sum_probs=63.6
Q ss_pred eCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccC
Q 016404 189 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY 267 (390)
Q Consensus 189 ~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 267 (390)
.++++.+..... ++++++|+||++||++|+.+.|.|.+++++++. ..++.++.|.++..
T Consensus 11 ~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~~~vd~~~~------------------ 70 (133)
T 2dj3_A 11 VVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKG--QKDLVIAKMDATAN------------------ 70 (133)
T ss_dssp ECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTT--SSSEEEEEECTTTS------------------
T ss_pred EEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCCEEEEEecCCcC------------------
Confidence 555665554444 479999999999999999999999999999973 13566666655532
Q ss_pred CchHHHHHHHHccccccceEEEECCCCcE
Q 016404 268 EDRARQDLCRIFNIKGIPALVLIGPDGKT 296 (390)
Q Consensus 268 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v 296 (390)
..+++.|+|.++||+++++++|++
T Consensus 71 -----~~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 71 -----DITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp -----CCCCSSCCCSSSSEEEEECTTCTT
T ss_pred -----HHHHhhcCCCcCCEEEEEeCCCcc
Confidence 345568999999999999876654
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=103.00 Aligned_cols=71 Identities=23% Similarity=0.491 Sum_probs=62.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+||++||++|+.+.|.+.+++++++ .++.++.|+.|.. ..+++.|+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~ 69 (105)
T 1fb6_A 17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS----GKIAVYKLNTDEA-----------------------PGIATQYN 69 (105)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCChHHHHHHHHHHHHHHHhc----CceEEEEEcCcch-----------------------HHHHHhCC
Confidence 46899999999999999999999999999986 4588888887753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|+++++ ++|+++.+
T Consensus 70 v~~~Pt~~~~-~~g~~~~~ 87 (105)
T 1fb6_A 70 IRSIPTVLFF-KNGERKES 87 (105)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-eCCeEEEE
Confidence 9999998888 78998876
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=111.27 Aligned_cols=71 Identities=17% Similarity=0.374 Sum_probs=61.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++|+|+|||+||++|+.+.|.|.+++++++ .++.++.|++|.. ..+++.|+
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~-----------------------~~~~~~~~ 74 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK----NFAVIYLVDITEV-----------------------PDFNKMYE 74 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTC-----------------------CTTTTSSC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEccccC-----------------------HHHHHHcC
Confidence 36899999999999999999999999999986 4588888888753 45788999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+++.+
T Consensus 75 i~~~Pt~~~~-~~G~~v~~ 92 (142)
T 1qgv_A 75 LYDPCTVMFF-FRNKHIMI 92 (142)
T ss_dssp SCSSCEEEEE-ETTEEEEE
T ss_pred CCCCCEEEEE-ECCcEEEE
Confidence 9999999999 68887764
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-13 Score=102.86 Aligned_cols=71 Identities=28% Similarity=0.629 Sum_probs=62.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.+.+++++++ .++.++.|+.|. +..+++.|+
T Consensus 19 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~-----------------------~~~~~~~~~ 71 (106)
T 1xwb_A 19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFA----DNVVVLKVDVDE-----------------------CEDIAMEYN 71 (106)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTT-----------------------CHHHHHHTT
T ss_pred CCCEEEEEEECCcCHHHHHhhHHHHHHHHHhC----CCeEEEEEeccc-----------------------hHHHHHHcC
Confidence 57899999999999999999999999999885 568888888775 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|+++++ ++|+++.+
T Consensus 72 v~~~Pt~~~~-~~G~~~~~ 89 (106)
T 1xwb_A 72 ISSMPTFVFL-KNGVKVEE 89 (106)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-cCCcEEEE
Confidence 9999998887 78988776
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=106.37 Aligned_cols=76 Identities=18% Similarity=0.437 Sum_probs=63.2
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
+.....+||+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.. ..+
T Consensus 17 f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~~~~vd~~~~-----------------------~~l 69 (109)
T 3f3q_A 17 FDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDEL-----------------------GDV 69 (109)
T ss_dssp HHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHH
T ss_pred HHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC----CEEEEEECCCC-----------------------HHH
Confidence 444445699999999999999999999999999998854 56777776633 578
Q ss_pred HHhcCcCCCCeEEEEcCCCccccc
Q 016404 115 RIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+++|++.++|++++++ +|+++.+
T Consensus 70 ~~~~~v~~~Pt~~~~~-~G~~~~~ 92 (109)
T 3f3q_A 70 AQKNEVSAMPTLLLFK-NGKEVAK 92 (109)
T ss_dssp HHHTTCCSSSEEEEEE-TTEEEEE
T ss_pred HHHcCCCccCEEEEEE-CCEEEEE
Confidence 9999999999999997 8887653
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=110.91 Aligned_cols=70 Identities=19% Similarity=0.433 Sum_probs=61.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+++++||+||++||++|+.+.|.|.+++++++ ++.++.|++|. +..+++.|+
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----~v~~~~vd~~~-----------------------~~~l~~~~~ 82 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-----QVSFVKLEAEG-----------------------VPEVSEKYE 82 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTT-----------------------SHHHHHHTT
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-----CeEEEEEECCC-----------------------CHHHHHHcC
Confidence 47899999999999999999999999999873 47788888775 367899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|++++++ +|+++.+
T Consensus 83 v~~~Pt~~~~~-~G~~~~~ 100 (153)
T 2wz9_A 83 ISSVPTFLFFK-NSQKIDR 100 (153)
T ss_dssp CCSSSEEEEEE-TTEEEEE
T ss_pred CCCCCEEEEEE-CCEEEEE
Confidence 99999999998 9998876
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.2e-14 Score=121.45 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=69.6
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
+++++.+.....+++++||+||++||++|+.+.|.+.+++++++ ..+.++.|+++..
T Consensus 101 ~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~~~~------------------- 157 (210)
T 3apq_A 101 TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD----GLLRIGAVNCGDD------------------- 157 (210)
T ss_dssp ECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTB----TTBEEEEEETTTC-------------------
T ss_pred EecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhc----CceEEEEEECCcc-------------------
Confidence 55555555544578999999999999999999999999999986 4588888887753
Q ss_pred chHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..+++.|+|.++||++++ ++|+++.+
T Consensus 158 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 183 (210)
T 3apq_A 158 ----RMLCRMKGVNSYPSLFIF-RSGMAAVK 183 (210)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-CTTSCCEE
T ss_pred ----HHHHHHcCCCcCCeEEEE-ECCCceeE
Confidence 678999999999999999 88887665
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=105.42 Aligned_cols=86 Identities=20% Similarity=0.379 Sum_probs=68.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.++.+.++ ++.++.|+++. ...++++|+
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----~v~~~~vd~~~-----------------------~~~l~~~~~ 69 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-----QVAISSVDSEA-----------------------RPELMKELG 69 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-----TSCEEEEEGGG-----------------------CHHHHHHTT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-----CcEEEEEcCcC-----------------------CHHHHHHcC
Confidence 45899999999999999999999999887763 46777777764 367899999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
|.++|+++++ ++|+++.+ ..|... .++|.+.++.
T Consensus 70 v~~~Pt~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~~~~ 103 (110)
T 2l6c_A 70 FERVPTLVFI-RDGKVAKV-------FSGIMN-------PRELQALYAS 103 (110)
T ss_dssp CCSSCEEEEE-ESSSEEEE-------EESCCC-------HHHHHHHHHT
T ss_pred CcccCEEEEE-ECCEEEEE-------EcCCCC-------HHHHHHHHHH
Confidence 9999999999 89998876 456443 5556555554
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=107.47 Aligned_cols=72 Identities=14% Similarity=0.422 Sum_probs=60.8
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.++++++|+||++||++|+.+.|.+.+++++++ ++.++.|+.+.+ +..++++|
T Consensus 35 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----~~~~~~vd~~~~----------------------~~~~~~~~ 87 (124)
T 1faa_A 35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----DVIFLKLDCNQE----------------------NKTLAKEL 87 (124)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSST----------------------THHHHHHH
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-----CCEEEEEecCcc----------------------hHHHHHHc
Confidence 467999999999999999999999999999885 367777777632 36789999
Q ss_pred cccccceEEEECCCCcEEee
Q 016404 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|.++|+++++ ++|+++.+
T Consensus 88 ~v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1faa_A 88 GIRVVPTFKIL-KENSVVGE 106 (124)
T ss_dssp CCSSSSEEEEE-ETTEEEEE
T ss_pred CCCeeeEEEEE-eCCcEEEE
Confidence 99999996665 89998876
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=124.66 Aligned_cols=71 Identities=18% Similarity=0.367 Sum_probs=63.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++|+|+|+||++||++|+.+.|.+.+++++++ +++.++.|++|.. ..+++.|+
T Consensus 25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~ 77 (287)
T 3qou_A 25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYN----GQFILAKLDCDAE-----------------------QMIAAQFG 77 (287)
T ss_dssp TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHT----SSSEEEEEETTTC-----------------------HHHHHTTT
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHcC----CCeEEEEEeCccC-----------------------HHHHHHcC
Confidence 47999999999999999999999999999997 4588888888753 68999999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+++.+
T Consensus 78 v~~~Pt~~~~-~~G~~~~~ 95 (287)
T 3qou_A 78 LRAIPTVYLF-QNGQPVDG 95 (287)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCCCCeEEEE-ECCEEEEE
Confidence 9999999999 78988875
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=104.58 Aligned_cols=70 Identities=23% Similarity=0.524 Sum_probs=61.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+||+++|+||++||++|+.+.|.|.+++++++ . +.++.|++|.. ..++++|+
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~----~-v~~~~vd~~~~-----------------------~~l~~~~~ 80 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP----D-VRFVKCDVDES-----------------------PDIAKECE 80 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT----T-SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----C-CEEEEEECCCC-----------------------HHHHHHCC
Confidence 46899999999999999999999999999885 2 78888887753 67899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 81 v~~~Pt~~~~-~~G~~~~~ 98 (114)
T 2oe3_A 81 VTAMPTFVLG-KDGQLIGK 98 (114)
T ss_dssp CCSBSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-eCCeEEEE
Confidence 9999999887 89998876
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-13 Score=106.06 Aligned_cols=71 Identities=28% Similarity=0.566 Sum_probs=62.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+||++||++|+.+.|.|.+++++++ .++.++.|+++.. ..++++|+
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~ 81 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERA----TDLTVAKLDVDTN-----------------------PETARNFQ 81 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHhcC
Confidence 46899999999999999999999999999986 4588888888753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 82 i~~~Pt~~~~-~~g~~~~~ 99 (121)
T 2i1u_A 82 VVSIPTLILF-KDGQPVKR 99 (121)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcCCEEEEE-ECCEEEEE
Confidence 9999999988 58988776
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=106.42 Aligned_cols=71 Identities=30% Similarity=0.566 Sum_probs=61.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+ ..++++|++
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~v 69 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDEN-----------------------QETAGKYGV 69 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT---CEEEEEETTTC-----------------------CSHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 7899999999999999999999999999999764 77888877643 368899999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++|+++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~G~~~~~ 86 (112)
T 2voc_A 70 MSIPTLLVL-KDGEVVET 86 (112)
T ss_dssp CSBSEEEEE-ETTEEEEE
T ss_pred CcccEEEEE-eCCEEEEE
Confidence 999999999 79987643
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=106.90 Aligned_cols=70 Identities=17% Similarity=0.472 Sum_probs=61.3
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+++++||+||++||++|+.+.|.|.+++++++ ++.++.|++|.. ..+++.|+
T Consensus 36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----~v~~~~vd~d~~-----------------------~~l~~~~~ 87 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----TVKFAKVDADNN-----------------------SEIVSKCR 87 (125)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----CCEEEEEECCCC-----------------------HHHHHHcC
Confidence 56899999999999999999999999999874 478888888753 67899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 88 v~~~Pt~~i~-~~G~~~~~ 105 (125)
T 1r26_A 88 VLQLPTFIIA-RSGKMLGH 105 (125)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-eCCeEEEE
Confidence 9999998888 89998876
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-15 Score=123.31 Aligned_cols=80 Identities=16% Similarity=0.358 Sum_probs=62.1
Q ss_pred eeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHH
Q 016404 194 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 273 (390)
Q Consensus 194 ~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (390)
.+.....+||+|||+|||+||++|+.+.|.|.++.+.+. .++.++.|++|.+. .
T Consensus 38 ~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~----~~~~~~~v~~d~~~----------------------~ 91 (164)
T 1sen_A 38 GKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISE----LSHNFVMVNLEDEE----------------------E 91 (164)
T ss_dssp HHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH----HHTTSEEEEEEGGG----------------------S
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhh----cCCeEEEEEecCCc----------------------h
Confidence 444555678999999999999999999999999876654 34567888877532 1
Q ss_pred HHHHHccc--cccceEEEECCCCcEEee
Q 016404 274 DLCRIFNI--KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 274 ~l~~~~~v--~~~P~~~lid~~G~v~~~ 299 (390)
.+...|++ .++|+++++|++|+++.+
T Consensus 92 ~~~~~~~~~~~~~Pt~~~~d~~G~~~~~ 119 (164)
T 1sen_A 92 PKDEDFSPDGGYIPRILFLDPSGKVHPE 119 (164)
T ss_dssp CSCGGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred HHHHHhcccCCcCCeEEEECCCCCEEEE
Confidence 14456777 669999999999999876
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=106.36 Aligned_cols=75 Identities=24% Similarity=0.459 Sum_probs=60.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.|++++|+||++||++|+.+.|.|.+++++++. .++.+.++...+ .+....+++.|+
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~------~v~~~~~~~~~~-----------------~~~~~~~~~~~~ 84 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA------HIYFINSEEPSQ-----------------LNDLQAFRSRYG 84 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC------CCEEEETTCGGG-----------------HHHHHHHHHHHT
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC------eEEEEECCCcCc-----------------HHHHHHHHHHcC
Confidence 468999999999999999999999999988752 467777765321 112467889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+++.+
T Consensus 85 i~~~Pt~~~~-~~G~~~~~ 102 (118)
T 1zma_A 85 IPTVPGFVHI-TDGQINVR 102 (118)
T ss_dssp CCSSCEEEEE-ETTEEEEE
T ss_pred CCCCCeEEEE-ECCEEEEE
Confidence 9999999999 58888766
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=109.63 Aligned_cols=72 Identities=10% Similarity=0.228 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+|||+||++|+.+.|.|++++++++++ +.++.|++|.. ..++++|++
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~-----------------------~~~~~~~~i 75 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV-----------------------PDFNKMYEL 75 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC-----------------------CTTTTSSCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEccccC-----------------------HHHHHHcCC
Confidence 4899999999999999999999999999999654 77777777643 357789999
Q ss_pred CCCCeEEEEcCCCcccccc
Q 016404 121 DRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~ 139 (390)
.++||+++++ +|+++...
T Consensus 76 ~~~Pt~~~~~-~G~~v~~~ 93 (142)
T 1qgv_A 76 YDPCTVMFFF-RNKHIMID 93 (142)
T ss_dssp CSSCEEEEEE-TTEEEEEE
T ss_pred CCCCEEEEEE-CCcEEEEe
Confidence 9999999995 88877543
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-13 Score=106.87 Aligned_cols=83 Identities=25% Similarity=0.457 Sum_probs=61.4
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
.++++.+.....+++.++|+||++||++|+.+.|.|.+++++|+ .++.++.|+++..
T Consensus 37 ~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~------------------- 93 (140)
T 1v98_A 37 EADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHA----GRLKVVKVNVDEH------------------- 93 (140)
T ss_dssp ------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-------------------
T ss_pred cCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHcc----CceEEEEEECCCC-------------------
Confidence 44455444433333339999999999999999999999999987 4588888888753
Q ss_pred chHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..+++.|+|.++|+++++ ++|+++.+
T Consensus 94 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 119 (140)
T 1v98_A 94 ----PGLAARYGVRSVPTLVLF-RRGAPVAT 119 (140)
T ss_dssp ----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ----HHHHHHCCCCccCEEEEE-eCCcEEEE
Confidence 678899999999999999 79998876
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=124.98 Aligned_cols=86 Identities=19% Similarity=0.403 Sum_probs=64.5
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCC---CcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG---TELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~---~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
+..++++ +...-.++++++|.|||+||++|+.+.|.|.++++++++.. ..+.++.| |++.+
T Consensus 7 v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~V--d~~~~------------- 71 (382)
T 2r2j_A 7 ITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARV--DCDQH------------- 71 (382)
T ss_dssp -CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEE--ETTTC-------------
T ss_pred eEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEE--ECCcc-------------
Confidence 4555666 54332358999999999999999999999999999996421 12445544 44443
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|+|.++||++++. +|+++.
T Consensus 72 --------~~l~~~~~v~~~Pt~~~f~-~G~~~~ 96 (382)
T 2r2j_A 72 --------SDIAQRYRISKYPTLKLFR-NGMMMK 96 (382)
T ss_dssp --------HHHHHHTTCCEESEEEEEE-TTEEEE
T ss_pred --------HHHHHhcCCCcCCEEEEEe-CCcEee
Confidence 6899999999999999995 787653
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.3e-14 Score=111.24 Aligned_cols=80 Identities=20% Similarity=0.437 Sum_probs=64.0
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+.++..+||+++|+||++||++|+.+.|.+ .++.+.++.. +.++.|++|.+..
T Consensus 20 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~--------------------- 75 (130)
T 2kuc_A 20 LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKGEG--------------------- 75 (130)
T ss_dssp HHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSSTTH---------------------
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCcch---------------------
Confidence 666667899999999999999999999999 6776666544 4555555553232
Q ss_pred HHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 112 KKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|+++++|++|+++.+
T Consensus 76 ~~~~~~~~v~~~Pt~~~~d~~G~~~~~ 102 (130)
T 2kuc_A 76 VELRKKYGVHAYPTLLFINSSGEVVYR 102 (130)
T ss_dssp HHHHHHTTCCSSCEEEEECTTSCEEEE
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEEEE
Confidence 689999999999999999999988753
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-13 Score=106.65 Aligned_cols=72 Identities=21% Similarity=0.475 Sum_probs=62.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++. .++.++.|++|.. ..+++.|+
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~---~~v~~~~vd~d~~-----------------------~~~~~~~~ 85 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG---DKVGFYKVDVDEQ-----------------------SQIAQEVG 85 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHH---HHSEEEEEETTTC-----------------------HHHHHHHT
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcC---CcEEEEEEECcCC-----------------------HHHHHHcC
Confidence 468999999999999999999999999988874 3588888888753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 86 v~~~Pt~~~~-~~G~~~~~ 103 (121)
T 2j23_A 86 IRAMPTFVFF-KNGQKIDT 103 (121)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-ECCeEEee
Confidence 9999999999 68988876
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=108.47 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=60.3
Q ss_pred CCEEEEEEecCCC--hhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 42 GKTICLFFSANWC--RPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 42 gk~vll~F~a~~C--~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
+++|||+|||+|| ++|+.+.|.|.+++++|.++ +.++-|++| ++ ..++.+|+
T Consensus 33 ~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvD--e~---------------------~~la~~yg 86 (137)
T 2qsi_A 33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAE--AE---------------------RGLMARFG 86 (137)
T ss_dssp SSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGG--GH---------------------HHHHHHHT
T ss_pred CCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECC--CC---------------------HHHHHHcC
Confidence 3599999999999 99999999999999999765 556655554 33 79999999
Q ss_pred cCCCCeEEEEcCCCcccccc
Q 016404 120 VDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~~ 139 (390)
|+++||+++|. +|+.+.+-
T Consensus 87 V~siPTlilFk-dG~~v~~~ 105 (137)
T 2qsi_A 87 VAVCPSLAVVQ-PERTLGVI 105 (137)
T ss_dssp CCSSSEEEEEE-CCEEEEEE
T ss_pred CccCCEEEEEE-CCEEEEEE
Confidence 99999999995 99888553
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=105.54 Aligned_cols=89 Identities=11% Similarity=0.121 Sum_probs=66.3
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+|||+||++|+.+.|.|.+++++|+ ++.++-|.+|.. ++.|+|
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-----~v~f~kvd~d~~--------------------------~~~~~v 71 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-----ETKFVKAIVNSC--------------------------IQHYHD 71 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-----TSEEEEEEGGGT--------------------------STTCCG
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-----CCEEEEEEhHHh--------------------------HHHCCC
Confidence 3599999999999999999999999999985 366777766531 368999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
.++||++++ ++|+.+.+ ..|........-..++|+..|.+
T Consensus 72 ~~~PT~~~f-k~G~~v~~-------~~G~~~~gg~~~~~~~le~~L~~ 111 (118)
T 3evi_A 72 NCLPTIFVY-KNGQIEAK-------FIGIIECGGINLKLEELEWKLAE 111 (118)
T ss_dssp GGCSEEEEE-ETTEEEEE-------EESTTTTTCSSCCHHHHHHHHHT
T ss_pred CCCCEEEEE-ECCEEEEE-------EeChhhhCCCCCCHHHHHHHHHH
Confidence 999999999 78888776 45554433223335555555543
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-13 Score=102.72 Aligned_cols=70 Identities=20% Similarity=0.416 Sum_probs=60.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+|++++|+||++||++|+.+.|.|.+++++++ ++.++.|+++. ...++++|+
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-----~v~~~~vd~~~-----------------------~~~~~~~~~ 76 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----KMVFIKVDVDE-----------------------VSEVTEKEN 76 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTT-----------------------THHHHHHTT
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-----CCEEEEEECCC-----------------------CHHHHHHcC
Confidence 46899999999999999999999999998874 47888888775 357889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 77 v~~~Pt~~~~-~~G~~~~~ 94 (112)
T 1syr_A 77 ITSMPTFKVY-KNGSSVDT 94 (112)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-ECCcEEEE
Confidence 9999998887 68988776
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-13 Score=109.73 Aligned_cols=87 Identities=21% Similarity=0.328 Sum_probs=65.1
Q ss_pred cceeecCCCc-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~-~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
...+..++++ +..... ++++++|+||++||++|+.+.|.|.+++++++..+ .+.++ .+|.+.+
T Consensus 6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~-~~~~~--~vd~~~~------------ 70 (133)
T 2dj3_A 6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK-DLVIA--KMDATAN------------ 70 (133)
T ss_dssp SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSS-SEEEE--EECTTTS------------
T ss_pred CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-CEEEE--EecCCcC------------
Confidence 3446677777 655444 58999999999999999999999999999997531 24444 4554432
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016404 103 AVPFDETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
..++++|++.++|++++++++|++
T Consensus 71 ---------~~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 71 ---------DITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp ---------CCCCSSCCCSSSSEEEEECTTCTT
T ss_pred ---------HHHHhhcCCCcCCEEEEEeCCCcc
Confidence 345678999999999999865543
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=106.06 Aligned_cols=85 Identities=19% Similarity=0.387 Sum_probs=68.3
Q ss_pred eeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 27 ~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
.+...+++ +...-.++++++|+||++||++|+.+.|.+.++++.+++. +.++.|++|..
T Consensus 5 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~----------------- 64 (109)
T 3tco_A 5 VTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDEN----------------- 64 (109)
T ss_dssp CCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTC-----------------
T ss_pred eEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEccccC-----------------
Confidence 34455566 5544446999999999999999999999999999998764 66777766533
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|+++++ ++|+++.+
T Consensus 65 ------~~~~~~~~i~~~Pt~~~~-~~g~~~~~ 90 (109)
T 3tco_A 65 ------QKIADKYSVLNIPTTLIF-VNGQLVDS 90 (109)
T ss_dssp ------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ------HHHHHhcCcccCCEEEEE-cCCcEEEe
Confidence 578999999999999999 79987754
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=114.89 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=63.0
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
..+++++||+++|+|||+|||||+.++|.|.++++.+++ +.++.|++|.+ ..+
T Consensus 47 ~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~----v~~~~v~~d~~-----------------------~~~ 99 (167)
T 1z6n_A 47 ERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN----IELAIISKGRA-----------------------EDD 99 (167)
T ss_dssp HHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT----EEEEEECHHHH-----------------------HHH
T ss_pred HHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCCC----cEEEEEECCCC-----------------------HHH
Confidence 556778899999999999999999999999999987642 77888776522 456
Q ss_pred HHhcC---cCCCCeEEEEcCCCccccc
Q 016404 115 RIRYR---VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 115 ~~~~~---v~~~P~~~~~d~~G~i~~~ 138 (390)
+.+|+ +.++||+++++++|+++.+
T Consensus 100 ~~~~~~~~v~~iPt~i~~~~~G~~~~~ 126 (167)
T 1z6n_A 100 LRQRLALERIAIPLVLVLDEEFNLLGR 126 (167)
T ss_dssp TTTTTTCSSCCSSEEEEECTTCCEEEE
T ss_pred HHHHHHcCCCCcCeEEEECCCCCEEEE
Confidence 66675 9999999999988887643
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-13 Score=104.56 Aligned_cols=70 Identities=20% Similarity=0.504 Sum_probs=61.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++|+ ++.++.|++|.. ..+++.|+
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~vd~~~~-----------------------~~~~~~~~ 84 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP-----NAVFLKVDVDEL-----------------------KPIAEQFS 84 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CcEEEEEECCCC-----------------------HHHHHHcC
Confidence 47899999999999999999999999999885 278888887753 67899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 85 v~~~Pt~~~~-~~G~~~~~ 102 (122)
T 2vlu_A 85 VEAMPTFLFM-KEGDVKDR 102 (122)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-eCCEEEEE
Confidence 9999998888 89998866
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-13 Score=107.62 Aligned_cols=102 Identities=15% Similarity=0.259 Sum_probs=72.1
Q ss_pred eCCCCeeeecc-cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhccc-CCceEEEEEecCCCHHHHHHhhhcCCccccc
Q 016404 189 SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA-NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 266 (390)
Q Consensus 189 ~~~g~~~~l~~-~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~-~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 266 (390)
.++++.+.... .++++++|+||++||++|+.+.|.|.+++++++... ..++.++.|.++...
T Consensus 11 ~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------------- 74 (121)
T 2djj_A 11 VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---------------- 74 (121)
T ss_dssp ECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----------------
T ss_pred EecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----------------
Confidence 55566555442 467999999999999999999999999999997300 126788888776431
Q ss_pred CCchHHHHHHHHccccccceEEEECCCCcE-EeeCcchhhhhcCccCCCCChhhHHHHHHHHHHh
Q 016404 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKT-ISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 330 (390)
Q Consensus 267 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v-~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 330 (390)
+++ +|.++||+++++++|++ +.+ ..|... .++|.+.+++.
T Consensus 75 --------~~~--~v~~~Pt~~~~~~~~~~~~~~-------~~G~~~-------~~~l~~~i~~~ 115 (121)
T 2djj_A 75 --------VPD--EIQGFPTIKLYPAGAKGQPVT-------YSGSRT-------VEDLIKFIAEN 115 (121)
T ss_dssp --------CSS--CCSSSSEEEEECSSCTTSCCC-------CCCCSC-------HHHHHHHHHHT
T ss_pred --------ccc--ccCcCCeEEEEeCcCCCCceE-------ecCCCC-------HHHHHHHHHhc
Confidence 222 89999999999887773 323 344433 55666666653
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=108.63 Aligned_cols=74 Identities=23% Similarity=0.468 Sum_probs=61.4
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+.+.++|+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.. ..+++
T Consensus 26 l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~-----------------------~~l~~ 78 (116)
T 3qfa_C 26 LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDC-----------------------QDVAS 78 (116)
T ss_dssp HHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT----SEEEEEETTTT-----------------------HHHHH
T ss_pred HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCC-----------------------HHHHH
Confidence 3334799999999999999999999999999988754 56777766532 58899
Q ss_pred hcCcCCCCeEEEEcCCCccccc
Q 016404 117 RYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+|++.++|+++++ ++|+++.+
T Consensus 79 ~~~v~~~Pt~~~~-~~G~~~~~ 99 (116)
T 3qfa_C 79 ECEVKSMPTFQFF-KKGQKVGE 99 (116)
T ss_dssp HTTCCSSSEEEEE-SSSSEEEE
T ss_pred HcCCccccEEEEE-eCCeEEEE
Confidence 9999999999999 68887654
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=108.69 Aligned_cols=71 Identities=30% Similarity=0.577 Sum_probs=57.4
Q ss_pred CCcEEEEEEccCCCc--------------ccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCccccc
Q 016404 201 AGKTIGLYFGAHWCP--------------PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 266 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~--------------~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 266 (390)
+||+++|+||++||+ +|+.+.|.+.+++++++ .++.++.|++|.+
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~----~~~~~~~vd~d~~----------------- 78 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN----------------- 78 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-----------CEEEEEETTSC-----------------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------
Confidence 479999999999999 99999999999998886 4578888888753
Q ss_pred CCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 267 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..++++|+|.++|+++++ ++|+++.+
T Consensus 79 ------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 104 (123)
T 1oaz_A 79 ------PGTAPKYGIRGIPTLLLF-KNGEVAAT 104 (123)
T ss_dssp ------TTTGGGGTCCBSSEEEEE-ESSSEEEE
T ss_pred ------HHHHHHcCCCccCEEEEE-ECCEEEEE
Confidence 567889999999999999 99998876
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-13 Score=105.00 Aligned_cols=71 Identities=23% Similarity=0.439 Sum_probs=60.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+||++||++|+.+.|.|.++++++ .++.++.|++|.. ..+++.|+
T Consensus 22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-----~~v~~~~vd~~~~-----------------------~~~~~~~~ 73 (118)
T 2f51_A 22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN-----KDVTFIKVDVDKN-----------------------GNAADAYG 73 (118)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-----CCeEEEEEECCCC-----------------------HHHHHhcC
Confidence 3789999999999999999999999999887 3577888887753 67899999
Q ss_pred ccccceEEEECC---CCcEEee
Q 016404 281 IKGIPALVLIGP---DGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~---~G~v~~~ 299 (390)
|.++|++++++. +|+++.+
T Consensus 74 i~~~Pt~~~~~~~~~~G~~~~~ 95 (118)
T 2f51_A 74 VSSIPALFFVKKEGNEIKTLDQ 95 (118)
T ss_dssp CCSSSEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEEeCCCCcceEEEe
Confidence 999999999965 3777766
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-13 Score=120.80 Aligned_cols=85 Identities=20% Similarity=0.394 Sum_probs=68.8
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
.++++.+.....+|++++|+|||+||++|+.+.|.|.++++++++ .+.++.++.|..+.
T Consensus 19 ~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~vd~~~-------------------- 77 (241)
T 3idv_A 19 VLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKD-KDPPIPVAKIDATS-------------------- 77 (241)
T ss_dssp EECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHT-SSSCCCEEEEETTT--------------------
T ss_pred EecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhh-cCCceEEEEEeccC--------------------
Confidence 556666665556789999999999999999999999999999985 22347777777765
Q ss_pred chHHHHHHHHccccccceEEEECCCCcEEe
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 298 (390)
+..++++|+|.++||+++++ +|+++.
T Consensus 78 ---~~~l~~~~~v~~~Pt~~~~~-~g~~~~ 103 (241)
T 3idv_A 78 ---ASVLASRFDVSGYPTIKILK-KGQAVD 103 (241)
T ss_dssp ---CHHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred ---CHHHHHhcCCCcCCEEEEEc-CCCccc
Confidence 36899999999999999994 666553
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-13 Score=103.57 Aligned_cols=70 Identities=23% Similarity=0.553 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.||+++|+||++||++|+.+.|.|.++++++++. +.++.|++|.+ ..++++|++
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~-----------------------~~~~~~~~v 69 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN-----------------------PETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcCC-----------------------HHHHHHcCC
Confidence 5799999999999999999999999999988754 67777776643 578899999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|+++++ ++|+++.
T Consensus 70 ~~~Pt~~~~-~~G~~~~ 85 (105)
T 1nsw_A 70 MSIPTLILF-KGGRPVK 85 (105)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred ccccEEEEE-eCCeEEE
Confidence 999999999 6898764
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-13 Score=102.09 Aligned_cols=82 Identities=22% Similarity=0.400 Sum_probs=66.0
Q ss_pred ecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecC
Q 016404 29 LSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFD 107 (390)
Q Consensus 29 ~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 107 (390)
.+.+.+ +.-.- ++++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+
T Consensus 6 ~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------- 62 (106)
T 3die_A 6 VKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDEN------------------- 62 (106)
T ss_dssp EECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-------------------
T ss_pred EECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcC-------------------
Confidence 344444 33222 7999999999999999999999999999999765 67777777643
Q ss_pred hhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 108 ETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 108 ~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|++++++ +|+++.+
T Consensus 63 ----~~~~~~~~v~~~Pt~~~~~-~G~~~~~ 88 (106)
T 3die_A 63 ----PSTAAKYEVMSIPTLIVFK-DGQPVDK 88 (106)
T ss_dssp ----HHHHHHTTCCSBSEEEEEE-TTEEEEE
T ss_pred ----HHHHHhCCCcccCEEEEEe-CCeEEEE
Confidence 5788999999999999996 8887643
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=7e-13 Score=107.14 Aligned_cols=70 Identities=24% Similarity=0.524 Sum_probs=61.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+ ..++++|++
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~v 90 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEKE-----------------------QELAGAFGI 90 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCCC-----------------------HHHHHHcCC
Confidence 5799999999999999999999999999998754 66777766633 578899999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++|++++++++|+++
T Consensus 91 ~~~Pt~~~~~~~G~~~ 106 (136)
T 2l5l_A 91 RSIPSILFIPMEGKPE 106 (136)
T ss_dssp CSSCEEEEECSSSCCE
T ss_pred CCCCEEEEECCCCcEE
Confidence 9999999999899876
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.2e-13 Score=104.76 Aligned_cols=69 Identities=20% Similarity=0.339 Sum_probs=60.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+||++||++|+.+.|.|.+++++++ .++.++.|+++.. ..+++.|+
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~ 72 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIK----GKVRAGKVDCQAY-----------------------PQTCQKAG 72 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEeCcCC-----------------------HHHHHHcC
Confidence 46899999999999999999999999999987 4688888887753 57889999
Q ss_pred ccccceEEEECCCCcE
Q 016404 281 IKGIPALVLIGPDGKT 296 (390)
Q Consensus 281 v~~~P~~~lid~~G~v 296 (390)
|.++|++++++++|++
T Consensus 73 v~~~Pt~~~~~~~~~~ 88 (122)
T 3aps_A 73 IKAYPSVKLYQYERAK 88 (122)
T ss_dssp CCSSSEEEEEEEEGGG
T ss_pred CCccceEEEEeCCCcc
Confidence 9999999999766663
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=110.48 Aligned_cols=85 Identities=22% Similarity=0.382 Sum_probs=67.3
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
..+..++++ +.....++|+++|+||++||++|+.+.|.|.++++++++.+..+.++. +|.+.+
T Consensus 17 ~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~--vd~~~~-------------- 80 (140)
T 2dj1_A 17 NGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAK--IDATSA-------------- 80 (140)
T ss_dssp TTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEE--ECTTTC--------------
T ss_pred CCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEE--EeCccc--------------
Confidence 346666777 655445689999999999999999999999999999987643344544 454432
Q ss_pred ecChhHHHHHHHhcCcCCCCeEEEEcCCCc
Q 016404 105 PFDETLHKKLRIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 105 ~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~ 134 (390)
..++++|++.++|+++++ .+|+
T Consensus 81 -------~~~~~~~~v~~~Pt~~~~-~~G~ 102 (140)
T 2dj1_A 81 -------SMLASKFDVSGYPTIKIL-KKGQ 102 (140)
T ss_dssp -------HHHHHHTTCCSSSEEEEE-ETTE
T ss_pred -------HHHHHHCCCCccCeEEEE-ECCc
Confidence 688999999999999999 5787
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.41 E-value=8e-13 Score=101.99 Aligned_cols=84 Identities=23% Similarity=0.475 Sum_probs=66.3
Q ss_pred eecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 28 LLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 28 l~~~~g~-~~l~-~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
+...+++ +... .-++++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+
T Consensus 4 v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~----------------- 63 (108)
T 2trx_A 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN----------------- 63 (108)
T ss_dssp EEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC-----------------
T ss_pred ceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---cEEEEEECCCC-----------------
Confidence 3445555 4422 236899999999999999999999999999998754 77777776643
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|+++++ ++|+++.+
T Consensus 64 ------~~~~~~~~v~~~Pt~~~~-~~G~~~~~ 89 (108)
T 2trx_A 64 ------PGTAPKYGIRGIPTLLLF-KNGEVAAT 89 (108)
T ss_dssp ------TTHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ------HHHHHHcCCcccCEEEEE-eCCEEEEE
Confidence 367899999999999999 69987643
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-13 Score=123.81 Aligned_cols=105 Identities=18% Similarity=0.084 Sum_probs=87.8
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.++|.+.+|+ ++|++++||+|+|+|| +.|||.|..+++.|.+ ... ++++|++||.| +..+.++|.++++ +
T Consensus 6 ~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~--~~~~v~gis~D-~~~~~~~f~~~~~-l 77 (322)
T 4eo3_A 6 HFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENF--EKAQVVGISRD-SVEALKRFKEKND-L 77 (322)
T ss_dssp CCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCC--TTEEEEEEESC-CHHHHHHHHHHHT-C
T ss_pred CcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----Hhh--CCCEEEEEeCC-CHHHHHHHHHhhC-C
Confidence 4669999999 9999999999999999 6799999998887754 122 33999999998 5667788888876 5
Q ss_pred ceecChhHHHHHHHhcCcC----CCCeEEEEcCCCcccc
Q 016404 103 AVPFDETLHKKLRIRYRVD----RIPSLIPLASDGTLIE 137 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~----~~P~~~~~d~~G~i~~ 137 (390)
.+|+..|.+..+++.||+. .+|+.++||++|+|++
T Consensus 78 ~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~ 116 (322)
T 4eo3_A 78 KVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRK 116 (322)
T ss_dssp CSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEE
T ss_pred ceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEE
Confidence 6777777788999999994 5789999999999974
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=100.05 Aligned_cols=70 Identities=27% Similarity=0.626 Sum_probs=60.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|.. ..+++.|+
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~-----------------------~~~~~~~~ 69 (104)
T 2vim_A 18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-----EVEFAKVDVDQN-----------------------EEAAAKYS 69 (104)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-----CCEEEEEeccCC-----------------------HHHHHHcC
Confidence 56899999999999999999999999988874 478888887753 67889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|+++++ ++|+++.+
T Consensus 70 v~~~Pt~~~~-~~g~~~~~ 87 (104)
T 2vim_A 70 VTAMPTFVFI-KDGKEVDR 87 (104)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CccccEEEEE-eCCcEEEE
Confidence 9999998888 58888776
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.2e-13 Score=103.99 Aligned_cols=70 Identities=24% Similarity=0.523 Sum_probs=59.5
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.++++++|+||++||++|+.+.|.+.++++++ ++.++.|+.|. +..++++|
T Consensus 31 ~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~------~~~~~~vd~~~-----------------------~~~~~~~~ 81 (117)
T 2xc2_A 31 HKNKLVVVDFFATWCGPCKTIAPLFKELSEKY------DAIFVKVDVDK-----------------------LEETARKY 81 (117)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS------SSEEEEEETTT-----------------------SHHHHHHT
T ss_pred CCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc------CcEEEEEECCc-----------------------cHHHHHHc
Confidence 46799999999999999999999999887765 36777777764 36789999
Q ss_pred cccccceEEEECCCCcEEee
Q 016404 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
+|.++|+++++ ++|+++.+
T Consensus 82 ~v~~~Pt~~~~-~~G~~~~~ 100 (117)
T 2xc2_A 82 NISAMPTFIAI-KNGEKVGD 100 (117)
T ss_dssp TCCSSSEEEEE-ETTEEEEE
T ss_pred CCCccceEEEE-eCCcEEEE
Confidence 99999998888 78998876
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-13 Score=103.01 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=52.5
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++++|+||++||++|+.+.|.+.++++++. + +.++.|++|.. ..++++|+
T Consensus 16 ~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~--~~~~~vd~~~~-----------------------~~l~~~~~ 68 (105)
T 4euy_A 16 EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--Y--VEKIEILLQDM-----------------------QEIAGRYA 68 (105)
T ss_dssp TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--T--EEEEEEEECCC-------------------------------
T ss_pred hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--C--ceEEEEECCCC-----------------------HHHHHhcC
Confidence 368999999999999999999999999999874 2 77777777643 47889999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
+.++||+++++ +|+++.+
T Consensus 69 v~~~Pt~~~~~-~G~~~~~ 86 (105)
T 4euy_A 69 VFTGPTVLLFY-NGKEILR 86 (105)
T ss_dssp -CCCCEEEEEE-TTEEEEE
T ss_pred CCCCCEEEEEe-CCeEEEE
Confidence 99999999996 8887643
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-13 Score=107.85 Aligned_cols=88 Identities=23% Similarity=0.383 Sum_probs=67.0
Q ss_pred cceeecCCCc-cc--cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQGK-VP--LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~--l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
+..+...+.. +. +...++++++|+||++||++|+.+.|.|.++++++++.+ +.++.|++| +.
T Consensus 6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~--~~----------- 70 (137)
T 2dj0_A 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG--LNFGKVDVG--RY----------- 70 (137)
T ss_dssp CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSS--CEEEECCTT--TC-----------
T ss_pred CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCc--cC-----------
Confidence 3445566665 33 444567799999999999999999999999999997533 455555444 32
Q ss_pred cceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++. ++||++++ .+|+++.+
T Consensus 71 ----------~~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~ 102 (137)
T 2dj0_A 71 ----------TDVSTRYKVSTSPLTKQLPTLILF-QGGKEAMR 102 (137)
T ss_dssp ----------HHHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEE
T ss_pred ----------HHHHHHccCcccCCcCCCCEEEEE-ECCEEEEE
Confidence 5788999998 99999999 58887754
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-13 Score=115.95 Aligned_cols=102 Identities=25% Similarity=0.429 Sum_probs=77.3
Q ss_pred eCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccC
Q 016404 189 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY 267 (390)
Q Consensus 189 ~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 267 (390)
.++.+.+.-.-+ ++|+++|+||++||++|+.+.|.|.+++++++ .++.++.|++|..
T Consensus 16 ~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~------------------ 73 (222)
T 3dxb_A 16 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN------------------ 73 (222)
T ss_dssp ECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC------------------
T ss_pred eCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc----CCcEEEEEECCCC------------------
Confidence 455555543222 57999999999999999999999999999997 4588888888753
Q ss_pred CchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcC
Q 016404 268 EDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 332 (390)
Q Consensus 268 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 332 (390)
..++++|+|.++|+++++ ++|+++.+ ..|... .+.+.+.+++...
T Consensus 74 -----~~l~~~~~v~~~Pt~~~~-~~G~~~~~-------~~G~~~-------~~~l~~~l~~~l~ 118 (222)
T 3dxb_A 74 -----PGTAPKYGIRGIPTLLLF-KNGEVAAT-------KVGALS-------KGQLKEFLDANLA 118 (222)
T ss_dssp -----TTTGGGGTCCSBSEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHHHSC
T ss_pred -----HHHHHHcCCCcCCEEEEE-ECCeEEEE-------eccccC-------hHHHHHHHHhhcc
Confidence 467789999999999999 58888776 455443 4555555655443
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-13 Score=109.61 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++|+|+|||+||++|+.+.|.|.++++++++. +.++.|++|.. ..++++|+|
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~-----------------------~~l~~~~~v 75 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQT-----------------------AVYTQYFDI 75 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTTC-----------------------CHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCcC-----------------------HHHHHHcCC
Confidence 5899999999999999999999999999988765 67777776533 478999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++||++++ .+|+++
T Consensus 76 ~~~Pt~~~~-~~G~~v 90 (149)
T 3gix_A 76 SYIPSTVFF-FNGQHM 90 (149)
T ss_dssp CSSSEEEEE-ETTEEE
T ss_pred CccCeEEEE-ECCeEE
Confidence 999999966 588877
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.39 E-value=7.4e-13 Score=102.85 Aligned_cols=75 Identities=19% Similarity=0.465 Sum_probs=60.7
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+.+.+|++++|+||++||++|+.+.|.|.++++++++ +.++.|+++... ..+++
T Consensus 19 ~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~----------------------~~~~~ 72 (111)
T 2pu9_C 19 VKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQEN----------------------KTLAK 72 (111)
T ss_dssp HTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSTT----------------------HHHHH
T ss_pred HHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC----eEEEEEecCcch----------------------HHHHH
Confidence 3444689999999999999999999999999998863 567777665322 68899
Q ss_pred hcCcCCCCeEEEEcCCCccccc
Q 016404 117 RYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+|++.++|+++++ ++|+++.+
T Consensus 73 ~~~v~~~Pt~~~~-~~G~~~~~ 93 (111)
T 2pu9_C 73 ELGIRVVPTFKIL-KENSVVGE 93 (111)
T ss_dssp HHCCSBSSEEEEE-SSSSEEEE
T ss_pred HcCCCeeeEEEEE-eCCcEEEE
Confidence 9999999996665 79987643
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-13 Score=115.22 Aligned_cols=102 Identities=12% Similarity=0.198 Sum_probs=66.1
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHH--HHHHhCCCcceecChh
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFE--EHFKCMPWLAVPFDET 109 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~--~~~~~~~~~~~~~~~~ 109 (390)
+.++..+||+|+|+|||+||++|+.+.+.+ .++.+.++++ +.++.|++|...+... .+.....+..+....+
T Consensus 40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~---~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (172)
T 3f9u_A 40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND---YVLITLYVDNKTPLTEPVKIMENGTERTLRTVGD 116 (172)
T ss_dssp HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCC---EEEEEEecCcccccchhhhhhhcchhhhhhhhhh
Confidence 556667899999999999999999974444 5555555543 7888888875542100 0000111111111222
Q ss_pred HHHHH-HHhcCcCCCCeEEEEcCCCcccccc
Q 016404 110 LHKKL-RIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 110 ~~~~l-~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
....+ +++|++.++|+++++|++|+++.+.
T Consensus 117 ~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~ 147 (172)
T 3f9u_A 117 KWSYLQRVKFGANAQPFYVLIDNEGNPLNKS 147 (172)
T ss_dssp HHHHHHHHHHSCCCSSEEEEECTTSCBSSCC
T ss_pred hhhHHHHHHcCCCCcceEEEECCCCCEEeec
Confidence 22333 6899999999999999999988654
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.6e-13 Score=105.87 Aligned_cols=68 Identities=21% Similarity=0.406 Sum_probs=58.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.|.++++++++. +.++.|++|.. ..++++|++
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~l~~~~~v 87 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKH-----------------------QSLGGQYGV 87 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTC-----------------------HHHHHHHTC
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCC-----------------------HHHHHHcCC
Confidence 5899999999999999999999999999998764 66777666532 578999999
Q ss_pred CCCCeEEEEcCCCc
Q 016404 121 DRIPSLIPLASDGT 134 (390)
Q Consensus 121 ~~~P~~~~~d~~G~ 134 (390)
.++|++++++++|+
T Consensus 88 ~~~Pt~~~~~~~~~ 101 (130)
T 2dml_A 88 QGFPTIKIFGANKN 101 (130)
T ss_dssp CSSSEEEEESSCTT
T ss_pred CccCEEEEEeCCCC
Confidence 99999999987776
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.4e-13 Score=103.55 Aligned_cols=75 Identities=19% Similarity=0.405 Sum_probs=61.0
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
..|++++|+||++||++|+.+.|.|.+++++++. .+++++++...+ .+....++++|+
T Consensus 27 ~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-----~v~~~~~~~~~~-----------------~~~~~~~~~~~~ 84 (118)
T 1zma_A 27 DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-----HIYFINSEEPSQ-----------------LNDLQAFRSRYG 84 (118)
T ss_dssp HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-----CCEEEETTCGGG-----------------HHHHHHHHHHHT
T ss_pred hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-----eEEEEECCCcCc-----------------HHHHHHHHHHcC
Confidence 3588999999999999999999999999998753 377887775432 223468899999
Q ss_pred cCCCCeEEEEcCCCcccc
Q 016404 120 VDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~ 137 (390)
+.++||+++++ +|+++.
T Consensus 85 i~~~Pt~~~~~-~G~~~~ 101 (118)
T 1zma_A 85 IPTVPGFVHIT-DGQINV 101 (118)
T ss_dssp CCSSCEEEEEE-TTEEEE
T ss_pred CCCCCeEEEEE-CCEEEE
Confidence 99999999995 887764
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.7e-13 Score=109.27 Aligned_cols=84 Identities=18% Similarity=0.481 Sum_probs=68.6
Q ss_pred eeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 27 ~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
.+.+.++. +.....++++++|+||++||++|+.+.|.|++++++++++ +.++.|++|.+
T Consensus 39 ~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~----------------- 98 (148)
T 3p2a_A 39 EVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEAE----------------- 98 (148)
T ss_dssp CCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------
T ss_pred CceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcCC-----------------
Confidence 35666666 5544467899999999999999999999999999998754 66777666533
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|++.++|++++++ +|+++.
T Consensus 99 ------~~l~~~~~v~~~Pt~~~~~-~G~~~~ 123 (148)
T 3p2a_A 99 ------PALSTRFRIRSIPTIMLYR-NGKMID 123 (148)
T ss_dssp ------HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred ------HHHHHHCCCCccCEEEEEE-CCeEEE
Confidence 5789999999999999995 888764
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=105.44 Aligned_cols=86 Identities=14% Similarity=0.290 Sum_probs=64.7
Q ss_pred eeecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhC-CCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 27 FLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR-GTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 27 ~l~~~~g~-~~l~-~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~-~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
.+..+++. +... .-.+++++|+||++||++|+.+.|.|.++++++++. ...+.++.|+++.+
T Consensus 8 ~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------------- 72 (133)
T 1x5d_A 8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN--------------- 72 (133)
T ss_dssp SCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC---------------
T ss_pred cCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC---------------
Confidence 35555565 4422 235899999999999999999999999999999731 01266666665532
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
..++++|++.++|+++++++ |+.+
T Consensus 73 --------~~l~~~~~v~~~Pt~~~~~~-g~~~ 96 (133)
T 1x5d_A 73 --------QVLASRYGIRGFPTIKIFQK-GESP 96 (133)
T ss_dssp --------CHHHHHHTCCSSSEEEEEET-TEEE
T ss_pred --------HHHHHhCCCCeeCeEEEEeC-CCce
Confidence 47889999999999999985 7644
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-13 Score=108.01 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc
Q 016404 204 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 283 (390)
Q Consensus 204 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 283 (390)
+++|+|||+||++|+.+.|.|.+++++++ +.++.|+++..... ...+....++++|+|.+
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~------v~~~~vd~~~~~~~--------------~~~d~~~~l~~~~~v~~ 92 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQLIQASKEVD------VPIVMFIWGSLIGE--------------RELSAARLEMNKAGVEG 92 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHTTCC------SCEEEEEECTTCCH--------------HHHHHHHHHHHHHTCCS
T ss_pred cEEEEEECCcCHhhhHhChhHHHHHHHCC------CEEEEEECCCchhh--------------hhhhhhHHHHHHcCCce
Confidence 89999999999999999999999987763 67888888543211 00123578999999999
Q ss_pred cceEEEECCCCcEEee
Q 016404 284 IPALVLIGPDGKTIST 299 (390)
Q Consensus 284 ~P~~~lid~~G~v~~~ 299 (390)
+||+++++ +|+++.+
T Consensus 93 ~Pt~~~~~-~G~~v~~ 107 (135)
T 3emx_A 93 TPTLVFYK-EGRIVDK 107 (135)
T ss_dssp SSEEEEEE-TTEEEEE
T ss_pred eCeEEEEc-CCEEEEE
Confidence 99988886 9998877
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=99.00 Aligned_cols=84 Identities=24% Similarity=0.472 Sum_probs=67.1
Q ss_pred eecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 28 LLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 28 l~~~~g~-~~l~-~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
+...+++ +... ..++++++|.||++||++|+.+.|.+.+++++++++ +.++.|++|.+
T Consensus 4 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~----------------- 63 (107)
T 2i4a_A 4 TLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVNIDDN----------------- 63 (107)
T ss_dssp EEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTS---EEEEEEETTTC-----------------
T ss_pred eeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCc---EEEEEEECCCC-----------------
Confidence 4455555 4322 236899999999999999999999999999999753 77777776643
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|+++++ ++|+++.+
T Consensus 64 ------~~~~~~~~v~~~Pt~~~~-~~G~~~~~ 89 (107)
T 2i4a_A 64 ------PETPNAYQVRSIPTLMLV-RDGKVIDK 89 (107)
T ss_dssp ------CHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ------HHHHHhcCCCccCEEEEE-eCCEEEEE
Confidence 478899999999999999 69987643
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-13 Score=106.41 Aligned_cols=84 Identities=19% Similarity=0.404 Sum_probs=62.8
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
..+++.+...-.++++++|+||++||++|+.+.|.+.++++.++. ...++.++.|..+.
T Consensus 11 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~v~~~~vd~~~-------------------- 69 (120)
T 1mek_A 11 VLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA-EGSEIRLAKVDATE-------------------- 69 (120)
T ss_dssp ECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT-TCCCCBCEEEETTT--------------------
T ss_pred EechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc-cCCcEEEEEEcCCC--------------------
Confidence 334444432223579999999999999999999999999999874 22346666666553
Q ss_pred chHHHHHHHHccccccceEEEECCCCcEE
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
+..++++|+|.++|+++++ ++|+++
T Consensus 70 ---~~~~~~~~~v~~~Pt~~~~-~~g~~~ 94 (120)
T 1mek_A 70 ---ESDLAQQYGVRGYPTIKFF-RNGDTA 94 (120)
T ss_dssp ---CCSSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred ---CHHHHHHCCCCcccEEEEE-eCCCcC
Confidence 2467889999999999999 677754
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=100.96 Aligned_cols=70 Identities=24% Similarity=0.603 Sum_probs=61.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.++.++++ ++.++.|++|. ...+++.|+
T Consensus 25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~v~~~~-----------------------~~~~~~~~~ 76 (113)
T 1ti3_A 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDE-----------------------LKAVAEEWN 76 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTT-----------------------CHHHHHHHH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-----CcEEEEEEccc-----------------------cHHHHHhCC
Confidence 47899999999999999999999999998874 47788887765 367889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|+++++ ++|+++.+
T Consensus 77 v~~~Pt~~~~-~~G~~~~~ 94 (113)
T 1ti3_A 77 VEAMPTFIFL-KDGKLVDK 94 (113)
T ss_dssp CSSTTEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-eCCEEEEE
Confidence 9999999999 79998876
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=101.33 Aligned_cols=70 Identities=24% Similarity=0.554 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+||+++|+||++||++|+.+.|.|.++++++++. +.++.|++|.+ ..++++|++
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 75 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDEN-----------------------PGTAAKYGV 75 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC---eEEEEEEcCCC-----------------------HHHHHhCCC
Confidence 5899999999999999999999999999998654 67777777643 578899999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|+++++ ++|+++.
T Consensus 76 ~~~Pt~~~~-~~G~~~~ 91 (112)
T 1t00_A 76 MSIPTLNVY-QGGEVAK 91 (112)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCEEEE
Confidence 999999988 5888764
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.6e-13 Score=105.79 Aligned_cols=84 Identities=21% Similarity=0.432 Sum_probs=66.7
Q ss_pred eecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 28 LLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 28 l~~~~g~-~~l~-~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
+..++++ +... .-++++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+
T Consensus 24 v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~~~~----------------- 83 (128)
T 2o8v_B 24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNIDQN----------------- 83 (128)
T ss_dssp SEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT---EEEEEEETTTC-----------------
T ss_pred cEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCC-----------------
Confidence 4455555 5422 236899999999999999999999999999998754 77777777643
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|+++++ ++|+++.+
T Consensus 84 ------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 109 (128)
T 2o8v_B 84 ------PGTAPKYGIRGIPTLLLF-KNGEVAAT 109 (128)
T ss_dssp ------CTTSGGGTCCSSSEEEEE-ETTEEEEE
T ss_pred ------HHHHHHcCCCccCEEEEE-eCCEEEEE
Confidence 357789999999999999 69987643
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-13 Score=110.24 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=57.1
Q ss_pred eeecccCCcEEEEEEccCCCcccHhhHHH---HHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchH
Q 016404 195 ITVSELAGKTIGLYFGAHWCPPCRSFTSQ---LIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA 271 (390)
Q Consensus 195 ~~l~~~~gk~vlv~F~a~wC~~C~~~~p~---l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 271 (390)
+.....+||+|+|+|||+||++|+.+.|. ..++.+.+. .++.++.|..|...+ ....+.
T Consensus 32 ~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~----~~fv~ikVD~de~~~-l~~~y~------------- 93 (173)
T 3ira_A 32 FEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN----EAFVSIKVDREERPD-IDNIYM------------- 93 (173)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHH----HHCEEEEEETTTCHH-HHHHHH-------------
T ss_pred HHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHH----hcCceeeeCCcccCc-HHHHHH-------------
Confidence 33444467999999999999999999883 245666554 344555555443321 111110
Q ss_pred HHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 272 RQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 272 ~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
..+...+|+.++|++++++++|++++..
T Consensus 94 -~~~q~~~gv~g~Pt~v~l~~dG~~v~~~ 121 (173)
T 3ira_A 94 -TVCQIILGRGGWPLNIIMTPGKKPFFAG 121 (173)
T ss_dssp -HHHHHHHSCCCSSEEEEECTTSCEEEEE
T ss_pred -HHHHHHcCCCCCcceeeECCCCCceeee
Confidence 1112235999999999999999999863
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=100.71 Aligned_cols=70 Identities=26% Similarity=0.606 Sum_probs=60.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|. ...+++.|+
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~-----------------------~~~~~~~~~ 78 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-----GAIFLKVDVDE-----------------------LKDVAEAYN 78 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTT-----------------------SHHHHHHTT
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----CcEEEEEEccc-----------------------CHHHHHHcC
Confidence 36899999999999999999999999998874 47788887765 367889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|+++++ ++|+++.+
T Consensus 79 v~~~Pt~~~~-~~g~~~~~ 96 (118)
T 2vm1_A 79 VEAMPTFLFI-KDGEKVDS 96 (118)
T ss_dssp CCSBSEEEEE-ETTEEEEE
T ss_pred CCcCcEEEEE-eCCeEEEE
Confidence 9999999988 78998876
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.2e-13 Score=103.42 Aligned_cols=73 Identities=22% Similarity=0.566 Sum_probs=58.7
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.+|++++|+||++||++|+.+.|.|.+++++++..+ +.++.|++|.+ ..++++|+
T Consensus 19 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~vd~~~~-----------------------~~~~~~~~ 73 (112)
T 3d6i_A 19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLSIDADEN-----------------------SEISELFE 73 (112)
T ss_dssp TTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTT--SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCC--EEEEEEecccC-----------------------HHHHHHcC
Confidence 358999999999999999999999999999875444 66777766532 57889999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
+.++|+++++ .+|+++.+
T Consensus 74 v~~~Pt~~~~-~~G~~~~~ 91 (112)
T 3d6i_A 74 ISAVPYFIII-HKGTILKE 91 (112)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-ECCEEEEE
Confidence 9999999999 58987653
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-13 Score=107.60 Aligned_cols=84 Identities=13% Similarity=0.179 Sum_probs=67.2
Q ss_pred eeecCCCc-cc-cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 27 FLLSRQGK-VP-LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 27 ~l~~~~g~-~~-l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
.+..++++ +. ...-.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|..
T Consensus 7 ~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~---------------- 67 (140)
T 3hz4_A 7 SIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATN---------------- 67 (140)
T ss_dssp TEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTC----------------
T ss_pred ceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcC----------------
Confidence 34555555 44 33335899999999999999999999999999999874 66777766533
Q ss_pred ecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 105 PFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 105 ~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|++.++|+++++ .+|+++.
T Consensus 68 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~ 92 (140)
T 3hz4_A 68 -------PWTAEKYGVQGTPTFKFF-CHGRPVW 92 (140)
T ss_dssp -------HHHHHHHTCCEESEEEEE-ETTEEEE
T ss_pred -------HhHHHHCCCCcCCEEEEE-eCCcEEE
Confidence 578999999999999999 5887764
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=103.41 Aligned_cols=86 Identities=20% Similarity=0.509 Sum_probs=67.5
Q ss_pred cceeecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~-~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
...+...+++ +... .-.|++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+
T Consensus 12 ~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~---v~~~~vd~d~~-------------- 74 (119)
T 1w4v_A 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDDH-------------- 74 (119)
T ss_dssp CSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---SEEEEEETTTT--------------
T ss_pred ceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCC--------------
Confidence 3445555555 4322 235899999999999999999999999999988654 67777776532
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|++.++|+++++ ++|+++.
T Consensus 75 ---------~~l~~~~~v~~~Pt~~~~-~~G~~~~ 99 (119)
T 1w4v_A 75 ---------TDLAIEYEVSAVPTVLAM-KNGDVVD 99 (119)
T ss_dssp ---------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred ---------HHHHHHcCCCcccEEEEE-eCCcEEE
Confidence 578999999999999999 6998764
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=9e-13 Score=102.17 Aligned_cols=83 Identities=20% Similarity=0.377 Sum_probs=65.7
Q ss_pred eecCCCc-cccCc-cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 28 LLSRQGK-VPLSS-CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 28 l~~~~g~-~~l~~-~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
+...+++ +.-.. .++++++|.||++||++|+.+.|.+.+++++++++ +.++.|++|..
T Consensus 6 v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~----------------- 65 (111)
T 3gnj_A 6 LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEEE----------------- 65 (111)
T ss_dssp SEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTC-----------------
T ss_pred ceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCcC-----------------
Confidence 3444555 33333 35799999999999999999999999999998764 66777776633
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|++.++|+++++ .+|+++.
T Consensus 66 ------~~l~~~~~v~~~Pt~~~~-~~g~~~~ 90 (111)
T 3gnj_A 66 ------KTLFQRFSLKGVPQILYF-KDGEYKG 90 (111)
T ss_dssp ------HHHHHHTTCCSSCEEEEE-ETTEEEE
T ss_pred ------hhHHHhcCCCcCCEEEEE-ECCEEEE
Confidence 578999999999999999 5887764
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=99.49 Aligned_cols=71 Identities=20% Similarity=0.521 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+ ..++++|++
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~v 71 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES-----------------------PNVASEYGI 71 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHHTC
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC-----------------------HHHHHHCCC
Confidence 5899999999999999999999999999998764 67777776633 578899999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++|+++++ ++|+++.+
T Consensus 72 ~~~Pt~~~~-~~G~~~~~ 88 (107)
T 1dby_A 72 RSIPTIMVF-KGGKKCET 88 (107)
T ss_dssp CSSCEEEEE-SSSSEEEE
T ss_pred CcCCEEEEE-eCCEEEEE
Confidence 999999988 58887643
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-12 Score=102.90 Aligned_cols=67 Identities=9% Similarity=0.107 Sum_probs=55.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+|++|||+|||+||++|+.+.|.|.+++++|. ++.++.|.++.. .+.|+
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-----~v~~~~vd~~~~--------------------------~~~~~ 77 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-----ETKFVKAIVNSC--------------------------IEHYH 77 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-----SEEEEEECCSSS--------------------------CSSCC
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----CcEEEEEEhhcC--------------------------cccCC
Confidence 35899999999999999999999999999874 366666665542 15799
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++. +|+++.+
T Consensus 78 i~~~Pt~~~~~-~G~~v~~ 95 (135)
T 2dbc_A 78 DNCLPTIFVYK-NGQIEGK 95 (135)
T ss_dssp SSCCSEEEEES-SSSCSEE
T ss_pred CCCCCEEEEEE-CCEEEEE
Confidence 99999999995 8887766
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=124.68 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=57.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|.|||+||++|+.+.|.|.++++.+++. +.++.|+++ .+ ..++++|+|
T Consensus 20 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~---v~~~~vd~~--~~---------------------~~l~~~~~v 73 (481)
T 3f8u_A 20 SAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI---VPLAKVDCT--AN---------------------TNTCNKYGV 73 (481)
T ss_dssp SSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CCEEEEETT--TC---------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc---eEEEEEECC--CC---------------------HHHHHhcCC
Confidence 3599999999999999999999999999999875 445555544 33 689999999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++||++++. +|+.+
T Consensus 74 ~~~Ptl~~~~-~g~~~ 88 (481)
T 3f8u_A 74 SGYPTLKIFR-DGEEA 88 (481)
T ss_dssp CEESEEEEEE-TTEEE
T ss_pred CCCCEEEEEe-CCcee
Confidence 9999999994 77543
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.1e-13 Score=104.44 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=63.4
Q ss_pred eecCCCc-c-ccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 28 LLSRQGK-V-PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 28 l~~~~g~-~-~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
+..++.+ + ....-.+++++|+||++||++|+.+.|.|.+++++++++ +.++.|+++..
T Consensus 5 v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~----------------- 64 (122)
T 3aps_A 5 SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDCQAY----------------- 64 (122)
T ss_dssp SEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC-----------------
T ss_pred hhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCcCC-----------------
Confidence 3444445 4 222235899999999999999999999999999999764 66776666533
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~ 134 (390)
..++++|++.++|++++++++|+
T Consensus 65 ------~~~~~~~~v~~~Pt~~~~~~~~~ 87 (122)
T 3aps_A 65 ------PQTCQKAGIKAYPSVKLYQYERA 87 (122)
T ss_dssp ------HHHHHHTTCCSSSEEEEEEEEGG
T ss_pred ------HHHHHHcCCCccceEEEEeCCCc
Confidence 57889999999999999986665
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=9.2e-13 Score=101.58 Aligned_cols=70 Identities=11% Similarity=0.283 Sum_probs=59.1
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++++|+||++||++|+.+.|.+.+++++++ + +.++.|++|.+ ..++++|+
T Consensus 19 ~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~--~~~~~vd~~~~-----------------------~~~~~~~~ 71 (107)
T 1gh2_A 19 AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--Q--AVFLEVDVHQC-----------------------QGTAATNN 71 (107)
T ss_dssp TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS-----------------------HHHHHHTT
T ss_pred CCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--C--cEEEEEECccC-----------------------HHHHHhcC
Confidence 368999999999999999999999999999883 2 66777766633 57889999
Q ss_pred cCCCCeEEEEcCCCcccc
Q 016404 120 VDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~ 137 (390)
+.++|+++++ ++|+++.
T Consensus 72 v~~~Pt~~~~-~~G~~~~ 88 (107)
T 1gh2_A 72 ISATPTFQFF-RNKVRID 88 (107)
T ss_dssp CCSSSEEEEE-ETTEEEE
T ss_pred CCcccEEEEE-ECCeEEE
Confidence 9999999999 5887764
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=103.65 Aligned_cols=71 Identities=20% Similarity=0.530 Sum_probs=60.0
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.+|++++|+||++||++|+.+.|.|.+++++++ + +.++.|++|.+ ..++++|+
T Consensus 36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~--v~~~~vd~d~~-----------------------~~l~~~~~ 88 (124)
T 1xfl_A 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--N--VLFLKVDTDEL-----------------------KSVASDWA 88 (124)
T ss_dssp HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--S--EEEEEEETTTS-----------------------HHHHHHTT
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--C--cEEEEEECccC-----------------------HHHHHHcC
Confidence 369999999999999999999999999999886 2 66777666532 57899999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
+.++|+++++ ++|+++.+
T Consensus 89 v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1xfl_A 89 IQAMPTFMFL-KEGKILDK 106 (124)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCccCEEEEE-ECCEEEEE
Confidence 9999999988 68987653
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-13 Score=105.97 Aligned_cols=84 Identities=19% Similarity=0.356 Sum_probs=65.7
Q ss_pred eeecCCCc-cccC-cc--CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 27 FLLSRQGK-VPLS-SC--GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 27 ~l~~~~g~-~~l~-~~--~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.+.+|+ ..+. .+ .|++++|+||++||++|+.+.|.|.++++++ . + +.++.|++|.+
T Consensus 4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~-~--v~~~~vd~~~~-------------- 65 (118)
T 2f51_A 4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-K-D--VTFIKVDVDKN-------------- 65 (118)
T ss_dssp CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T-T--SEEEEEETTTC--------------
T ss_pred cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C-C--eEEEEEECCCC--------------
Confidence 35666666 4444 22 5899999999999999999999999999988 2 2 66777776633
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcC---CCcccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRIPSLIPLAS---DGTLIE 137 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~---~G~i~~ 137 (390)
..++++|++.++|++++++. +|+++.
T Consensus 66 ---------~~~~~~~~i~~~Pt~~~~~~~~~~G~~~~ 94 (118)
T 2f51_A 66 ---------GNAADAYGVSSIPALFFVKKEGNEIKTLD 94 (118)
T ss_dssp ---------HHHHHHTTCCSSSEEEEEEEETTEEEEEE
T ss_pred ---------HHHHHhcCCCCCCEEEEEeCCCCcceEEE
Confidence 57889999999999999974 266654
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-13 Score=108.77 Aligned_cols=75 Identities=21% Similarity=0.423 Sum_probs=57.2
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-.++..+||+++|+||++||++|+.+.|.|+++++++ .+.++.+|.+.. ..+
T Consensus 33 ~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-------~v~~~~vd~~~~---------------------~~l 84 (133)
T 3cxg_A 33 QVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-------YVTLVDIDVDIH---------------------PKL 84 (133)
T ss_dssp HHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-------ECEEEEEETTTC---------------------HHH
T ss_pred HHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-------CEEEEEEeccch---------------------HHH
Confidence 4466778999999999999999999999998877654 244444444432 678
Q ss_pred HHhcCcCCCCeEEEE-cCCCc--ccc
Q 016404 115 RIRYRVDRIPSLIPL-ASDGT--LIE 137 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~-d~~G~--i~~ 137 (390)
+++|++.++|+++++ +++|+ ++.
T Consensus 85 ~~~~~v~~~Pt~~~~~~~~g~g~~~~ 110 (133)
T 3cxg_A 85 NDQHNIKALPTFEFYFNLNNEWVLVH 110 (133)
T ss_dssp HHHTTCCSSSEEEEEEEETTEEEEEE
T ss_pred HHhcCCCCCCEEEEEEecCCCeEEEE
Confidence 999999999999999 34565 554
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-14 Score=111.65 Aligned_cols=79 Identities=24% Similarity=0.486 Sum_probs=65.1
Q ss_pred Cc-cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecCh
Q 016404 33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108 (390)
Q Consensus 33 g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
.+ +.++..+||+++|+||++||++|+.+.|.+ .++.+.++.+ +.++.|++|.+..
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~------------------ 67 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR---FVVASVSVDTPEG------------------ 67 (130)
Confidence 45 888888999999999999999999999999 8888877653 5666666653332
Q ss_pred hHHHHHHHhcCcCCCCeEEEEcC-CCcc
Q 016404 109 TLHKKLRIRYRVDRIPSLIPLAS-DGTL 135 (390)
Q Consensus 109 ~~~~~l~~~~~v~~~P~~~~~d~-~G~i 135 (390)
..++++|++.++|+++++|+ +|++
T Consensus 68 ---~~~~~~~~v~~~Pt~~~~d~~~G~~ 92 (130)
T 2lst_A 68 ---QELARRYRVPGTPTFVFLVPKAGAW 92 (130)
Confidence 67899999999999999985 5876
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=103.27 Aligned_cols=81 Identities=15% Similarity=0.319 Sum_probs=63.4
Q ss_pred eeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 27 ~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
.+..+++. +. ..++++ ++|+||++||++|+.+.|.|.++++++++.+ +.++.|++|.+
T Consensus 8 ~v~~l~~~~f~-~~~~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~--v~~~~vd~~~~----------------- 66 (126)
T 1x5e_A 8 NVRVITDENWR-ELLEGD-WMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKVDVTEQ----------------- 66 (126)
T ss_dssp SEEECCTTTHH-HHTSSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEETTTC-----------------
T ss_pred ccEEecHHHHH-HHhCCC-EEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECcCC-----------------
Confidence 35555555 54 223444 8999999999999999999999999988644 66777766533
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
..++++|++.++|+++++ ++|++
T Consensus 67 ------~~~~~~~~v~~~Pt~~~~-~~G~~ 89 (126)
T 1x5e_A 67 ------PGLSGRFIINALPTIYHC-KDGEF 89 (126)
T ss_dssp ------HHHHHHTTCCSSSEEEEE-ETTEE
T ss_pred ------HHHHHHcCCcccCEEEEE-eCCeE
Confidence 578999999999999999 68874
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-12 Score=99.92 Aligned_cols=84 Identities=19% Similarity=0.486 Sum_probs=67.8
Q ss_pred eecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 28 LLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 28 l~~~~g~-~~l~-~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
+...+++ +... ...+++++|+||++||++|+.+.|.|.++++.++++ +.++.|++|.+
T Consensus 9 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~----------------- 68 (115)
T 1thx_A 9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN----------------- 68 (115)
T ss_dssp EEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC-----------------
T ss_pred eEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCC-----------------
Confidence 4555666 4422 236899999999999999999999999999998754 77888777643
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|+++++ ++|+++.+
T Consensus 69 ------~~~~~~~~v~~~Pt~~~~-~~G~~~~~ 94 (115)
T 1thx_A 69 ------PTTVKKYKVEGVPALRLV-KGEQILDS 94 (115)
T ss_dssp ------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred ------HHHHHHcCCCceeEEEEE-cCCEEEEE
Confidence 478899999999999999 79987653
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.34 E-value=9.4e-13 Score=100.97 Aligned_cols=73 Identities=23% Similarity=0.502 Sum_probs=60.7
Q ss_pred CccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016404 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 38 ~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
++.++++++|+||++||++|+.+.|.+.++++++++ +.++.|++|.. ..++++
T Consensus 16 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~vd~~~~-----------------------~~~~~~ 68 (105)
T 3m9j_A 16 DAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC-----------------------QDVASE 68 (105)
T ss_dssp HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----SEEEEEETTTC-----------------------HHHHHH
T ss_pred HhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC----eEEEEEEhhhh-----------------------HHHHHH
Confidence 344799999999999999999999999999998854 56777766533 578899
Q ss_pred cCcCCCCeEEEEcCCCccccc
Q 016404 118 YRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 118 ~~v~~~P~~~~~d~~G~i~~~ 138 (390)
|++.++|+++++ .+|+.+.+
T Consensus 69 ~~v~~~Pt~~~~-~~g~~~~~ 88 (105)
T 3m9j_A 69 SEVKSMPTFQFF-KKGQKVGE 88 (105)
T ss_dssp TTCCBSSEEEEE-ETTEEEEE
T ss_pred cCCCcCcEEEEE-ECCeEEEE
Confidence 999999999999 58877643
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=100.93 Aligned_cols=72 Identities=19% Similarity=0.404 Sum_probs=58.5
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|+||++||++|+.+.|.+.++++++......+.++.|+++.. ..++++|++.
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~l~~~~~v~ 77 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE-----------------------RNICSKYSVR 77 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTC-----------------------HHHHHHTTCC
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecccc-----------------------HhHHHhcCCC
Confidence 88999999999999999999999999988765433366666665532 5789999999
Q ss_pred CCCeEEEEcCCCcccc
Q 016404 122 RIPSLIPLASDGTLIE 137 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~ 137 (390)
++|+++++ ++|+++.
T Consensus 78 ~~Pt~~~~-~~g~~~~ 92 (111)
T 3uvt_A 78 GYPTLLLF-RGGKKVS 92 (111)
T ss_dssp SSSEEEEE-ETTEEEE
T ss_pred cccEEEEE-eCCcEEE
Confidence 99999999 5887654
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-13 Score=106.00 Aligned_cols=72 Identities=10% Similarity=0.143 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 41 GGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 41 ~gk~vll~F~a~~--C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
.+++|||+||++| |++|+.+.|.|.+++++|.++. +.++-|++| ++ ..++.+|
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~--v~~~KVdvD--e~---------------------~~lA~~y 87 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYT--WQVAIADLE--QS---------------------EAIGDRF 87 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSC--CEEEECCHH--HH---------------------HHHHHHH
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCe--EEEEEEECC--CC---------------------HHHHHHc
Confidence 5678999999999 9999999999999999986542 345544443 43 7999999
Q ss_pred CcCCCCeEEEEcCCCccccc
Q 016404 119 RVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~~~ 138 (390)
+|+++||+++|. +|+.+.+
T Consensus 88 gV~sIPTlilFk-~G~~v~~ 106 (140)
T 2qgv_A 88 GAFRFPATLVFT-GGNYRGV 106 (140)
T ss_dssp TCCSSSEEEEEE-TTEEEEE
T ss_pred CCccCCEEEEEE-CCEEEEE
Confidence 999999999995 9988754
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=97.68 Aligned_cols=83 Identities=19% Similarity=0.363 Sum_probs=65.0
Q ss_pred ecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 29 LSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 29 ~~~~g~-~~l~-~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
.+.+++ +... ...+++++|+||++||++|+.+.|.+.+++++++++ +.++.|++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~------------------ 61 (105)
T 1fb6_A 3 QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA------------------ 61 (105)
T ss_dssp EECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC------------------
T ss_pred eechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcch------------------
Confidence 344555 4332 235899999999999999999999999999998764 66777766533
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|+++++ ++|+++.+
T Consensus 62 -----~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (105)
T 1fb6_A 62 -----PGIATQYNIRSIPTVLFF-KNGERKES 87 (105)
T ss_dssp -----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred -----HHHHHhCCCCcccEEEEE-eCCeEEEE
Confidence 578899999999999988 58887643
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=106.22 Aligned_cols=72 Identities=24% Similarity=0.444 Sum_probs=61.2
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
..+++++|+||++||++|+.+.|.|++++++++++ +.++.|++|.+ ..++++|+
T Consensus 62 ~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~ 115 (155)
T 2ppt_A 62 RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAH-----------------------PAVAGRHR 115 (155)
T ss_dssp TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTS-----------------------THHHHHTT
T ss_pred hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCcc-----------------------HHHHHHcC
Confidence 36899999999999999999999999999999764 66777766533 47889999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
+.++|+++++ ++|+++.+
T Consensus 116 i~~~Pt~~~~-~~G~~~~~ 133 (155)
T 2ppt_A 116 IQGIPAFILF-HKGRELAR 133 (155)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCcCCEEEEE-eCCeEEEE
Confidence 9999999999 58987643
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=99.55 Aligned_cols=81 Identities=27% Similarity=0.503 Sum_probs=64.4
Q ss_pred cCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecCh
Q 016404 30 SRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108 (390)
Q Consensus 30 ~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
.+++. +...-..+++++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+
T Consensus 5 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~-------------------- 61 (109)
T 2yzu_A 5 EVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVDEN-------------------- 61 (109)
T ss_dssp ECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTC--------------------
T ss_pred EccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc---eEEEEEECCCC--------------------
Confidence 34444 4422225899999999999999999999999999998754 67777776643
Q ss_pred hHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 109 TLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 109 ~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|++.++|+++++ ++|+++.
T Consensus 62 ---~~~~~~~~v~~~Pt~~~~-~~g~~~~ 86 (109)
T 2yzu_A 62 ---PKTAMRYRVMSIPTVILF-KDGQPVE 86 (109)
T ss_dssp ---HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred ---HhHHHhCCCCcCCEEEEE-eCCcEee
Confidence 578899999999999999 6898764
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=107.40 Aligned_cols=71 Identities=13% Similarity=0.363 Sum_probs=60.1
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++++|+||++||++|+.+.|.|.++++++++ +.++.|++|.. ..++++|+
T Consensus 30 ~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~~~~-----------------------~~l~~~~~ 82 (153)
T 2wz9_A 30 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQ----VSFVKLEAEGV-----------------------PEVSEKYE 82 (153)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTS-----------------------HHHHHHTT
T ss_pred cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCC----eEEEEEECCCC-----------------------HHHHHHcC
Confidence 3589999999999999999999999999998742 66777766532 57889999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
+.++|++++++ +|+++.+
T Consensus 83 v~~~Pt~~~~~-~G~~~~~ 100 (153)
T 2wz9_A 83 ISSVPTFLFFK-NSQKIDR 100 (153)
T ss_dssp CCSSSEEEEEE-TTEEEEE
T ss_pred CCCCCEEEEEE-CCEEEEE
Confidence 99999999998 9987643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=118.97 Aligned_cols=83 Identities=13% Similarity=0.333 Sum_probs=66.2
Q ss_pred eecCCCc-cc--cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 28 LLSRQGK-VP--LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 28 l~~~~g~-~~--l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
+.+.+.+ +. +...+||+|+|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+
T Consensus 9 v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~---------------- 69 (287)
T 3qou_A 9 IVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDAE---------------- 69 (287)
T ss_dssp EEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTTC----------------
T ss_pred cEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCccC----------------
Confidence 4455555 33 23335899999999999999999999999999999864 66777666532
Q ss_pred ecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 105 PFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 105 ~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|+|.++||++++ .+|+++.
T Consensus 70 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~ 94 (287)
T 3qou_A 70 -------QMIAAQFGLRAIPTVYLF-QNGQPVD 94 (287)
T ss_dssp -------HHHHHTTTCCSSSEEEEE-ETTEEEE
T ss_pred -------HHHHHHcCCCCCCeEEEE-ECCEEEE
Confidence 589999999999999999 5888764
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-12 Score=99.85 Aligned_cols=69 Identities=25% Similarity=0.552 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+||+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.+ ..++++|++
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~~~vd~~~~-----------------------~~l~~~~~v 81 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDVDES-----------------------PDIAKECEV 81 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCC-----------------------HHHHHHCCC
Confidence 689999999999999999999999999998764 56777776633 578899999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|+++++ ++|+++.
T Consensus 82 ~~~Pt~~~~-~~G~~~~ 97 (114)
T 2oe3_A 82 TAMPTFVLG-KDGQLIG 97 (114)
T ss_dssp CSBSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCeEEE
Confidence 999999988 6898764
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.33 E-value=9e-13 Score=106.81 Aligned_cols=76 Identities=24% Similarity=0.527 Sum_probs=62.9
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
+..+..+||+++|+||++||++|+.+.|.|+++++++++ +.++.|++|.. ..+
T Consensus 39 ~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~----v~~~~v~~~~~-----------------------~~~ 91 (139)
T 3d22_A 39 LSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS----LMFLVIDVDEL-----------------------SDF 91 (139)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTS-----------------------HHH
T ss_pred HHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEeCccc-----------------------HHH
Confidence 334445799999999999999999999999999998842 66777776632 578
Q ss_pred HHhcCcCCCCeEEEEcCCCccccc
Q 016404 115 RIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+++|++.++|+++++ ++|+++.+
T Consensus 92 ~~~~~v~~~Pt~~~~-~~G~~~~~ 114 (139)
T 3d22_A 92 SASWEIKATPTFFFL-RDGQQVDK 114 (139)
T ss_dssp HHHTTCCEESEEEEE-ETTEEEEE
T ss_pred HHHcCCCcccEEEEE-cCCeEEEE
Confidence 999999999999999 69988743
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=94.99 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=54.7
Q ss_pred EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc
Q 016404 204 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 283 (390)
Q Consensus 204 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 283 (390)
++++.||++||++|+.+.|.|.+++++++ .++.++.|++|.+ ..++++|++.+
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~ 55 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFG----DKIDVEKIDIMVD-----------------------REKAIEYGLMA 55 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHC----SSCCEEEECTTTC-----------------------GGGGGGTCSSC
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHhCCcee
Confidence 46899999999999999999999999986 4678888888753 46778999999
Q ss_pred cceEEEECCCCcE
Q 016404 284 IPALVLIGPDGKT 296 (390)
Q Consensus 284 ~P~~~lid~~G~v 296 (390)
+|++++ +|++
T Consensus 56 ~Pt~~~---~G~~ 65 (85)
T 1nho_A 56 VPAIAI---NGVV 65 (85)
T ss_dssp SSEEEE---TTTE
T ss_pred eCEEEE---CCEE
Confidence 999988 8887
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=101.38 Aligned_cols=75 Identities=20% Similarity=0.515 Sum_probs=60.7
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+.+.+||+++|+||++||++|+.+.|.+.++++++++ +.++.|+++.+. ..+++
T Consensus 32 ~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~~----------------------~~~~~ 85 (124)
T 1faa_A 32 VKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQEN----------------------KTLAK 85 (124)
T ss_dssp HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSTT----------------------HHHHH
T ss_pred HHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC----CEEEEEecCcch----------------------HHHHH
Confidence 3345799999999999999999999999999998863 567766665322 57899
Q ss_pred hcCcCCCCeEEEEcCCCccccc
Q 016404 117 RYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+|++.++|+++++ ++|+++.+
T Consensus 86 ~~~v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1faa_A 86 ELGIRVVPTFKIL-KENSVVGE 106 (124)
T ss_dssp HHCCSSSSEEEEE-ETTEEEEE
T ss_pred HcCCCeeeEEEEE-eCCcEEEE
Confidence 9999999997777 58887643
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.1e-12 Score=111.37 Aligned_cols=71 Identities=20% Similarity=0.439 Sum_probs=61.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+|||+||++|+.+.|.+.++++++++ ...++.++.|+++.+. +..+++.|+
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~v~~~~vd~~~~~---------------------~~~l~~~~~ 86 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKA-WRPALYLAALDCAEET---------------------NSAVCRDFN 86 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGG-GTTTEEEEEEETTSTT---------------------THHHHHHTT
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHh-ccCcEEEEEEeCCchh---------------------hHHHHHHcC
Confidence 358999999999999999999999999999974 3347999999986442 578999999
Q ss_pred ccccceEEEECCC
Q 016404 281 IKGIPALVLIGPD 293 (390)
Q Consensus 281 v~~~P~~~lid~~ 293 (390)
|.++|+++++++.
T Consensus 87 v~~~Pt~~~~~~g 99 (244)
T 3q6o_A 87 IPGFPTVRFFXAF 99 (244)
T ss_dssp CCSSSEEEEECTT
T ss_pred CCccCEEEEEeCC
Confidence 9999999999763
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-12 Score=109.98 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=58.7
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHH---HHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQ---LVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~---l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+..+||+|+|+||++||++|+.+.|. ..++++.++++ ++.|.+|.++.
T Consensus 32 ~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~-----fv~ikVD~de~--------------------- 85 (173)
T 3ira_A 32 FEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA-----FVSIKVDREER--------------------- 85 (173)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH-----CEEEEEETTTC---------------------
T ss_pred HHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc-----CceeeeCCccc---------------------
Confidence 66677789999999999999999999883 24666666654 55555554432
Q ss_pred HHHHHh--------cCcCCCCeEEEEcCCCccccc
Q 016404 112 KKLRIR--------YRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 112 ~~l~~~--------~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..+.+. +|+.++|++++++++|+++..
T Consensus 86 ~~l~~~y~~~~q~~~gv~g~Pt~v~l~~dG~~v~~ 120 (173)
T 3ira_A 86 PDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFA 120 (173)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred CcHHHHHHHHHHHHcCCCCCcceeeECCCCCceee
Confidence 233333 499999999999999998864
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=100.45 Aligned_cols=70 Identities=21% Similarity=0.464 Sum_probs=59.5
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|+||++||++|+.+.|.|.++++++++. +.++.|++|.+ ..++++|++.
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~ 77 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAV-----------------------AAVAEAAGIT 77 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTT-----------------------HHHHHHHTCC
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCC---eEEEEEECCch-----------------------HHHHHHcCCC
Confidence 899999999999999999999999999998753 66777766532 5789999999
Q ss_pred CCCeEEEEcCCCccccc
Q 016404 122 RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~ 138 (390)
++|+++++ ++|+++.+
T Consensus 78 ~~Pt~~~~-~~G~~~~~ 93 (112)
T 1ep7_A 78 AMPTFHVY-KDGVKADD 93 (112)
T ss_dssp BSSEEEEE-ETTEEEEE
T ss_pred cccEEEEE-ECCeEEEE
Confidence 99998888 58987643
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=106.30 Aligned_cols=68 Identities=18% Similarity=0.322 Sum_probs=49.8
Q ss_pred cEEEEEEccCC--CcccHhhHHHHHHHHHHhhcccCCceE--EEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 203 KTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFE--VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 203 k~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~~--vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
+.++|+||++| |++|+.+.|.|.+++++| + ++. ++.|++|. +.+++++
T Consensus 35 ~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~----~v~~~~~~Vd~d~-----------------------~~~la~~ 86 (142)
T 2es7_A 35 GDGVILLSSDPRRTPEVSDNPVMIAELLREF-P----QFDWQVAVADLEQ-----------------------SEAIGDR 86 (142)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTC-T----TSCCEEEEECHHH-----------------------HHHHHHT
T ss_pred CCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c----ccceeEEEEECCC-----------------------CHHHHHh
Confidence 45788899887 999999999999999987 3 355 66766653 4789999
Q ss_pred ccccccceEEEECCCCcEEee
Q 016404 279 FNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~v~~~ 299 (390)
|+|.++||+++| ++|+++.+
T Consensus 87 ~~V~~iPT~~~f-k~G~~v~~ 106 (142)
T 2es7_A 87 FNVRRFPATLVF-TDGKLRGA 106 (142)
T ss_dssp TTCCSSSEEEEE-SCC----C
T ss_pred cCCCcCCeEEEE-eCCEEEEE
Confidence 999999999999 89988776
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=94.18 Aligned_cols=64 Identities=23% Similarity=0.421 Sum_probs=55.8
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
.++++.||++||++|+.+.|.|.+++++++ .++.++.|++|.+ ..++++|++.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~ 55 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMP----DAVEVEYINVMEN-----------------------PQKAMEYGIM 55 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCS----SSEEEEEEESSSS-----------------------CCTTTSTTTC
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcC----CceEEEEEECCCC-----------------------HHHHHHCCCc
Confidence 578999999999999999999999999886 5688999988753 4567889999
Q ss_pred ccceEEEECCCCcE
Q 016404 283 GIPALVLIGPDGKT 296 (390)
Q Consensus 283 ~~P~~~lid~~G~v 296 (390)
++|++++ +|++
T Consensus 56 ~~Pt~~~---~G~~ 66 (85)
T 1fo5_A 56 AVPTIVI---NGDV 66 (85)
T ss_dssp CSSEEEE---TTEE
T ss_pred ccCEEEE---CCEE
Confidence 9999988 7887
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-12 Score=96.98 Aligned_cols=72 Identities=29% Similarity=0.682 Sum_probs=60.4
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 39 ~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
+.++++++|+||++||++|+.+.|.+.+++++++.. +.++.|++|.+ ..++++|
T Consensus 17 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~ 70 (106)
T 1xwb_A 17 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDEC-----------------------EDIAMEY 70 (106)
T ss_dssp HHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC-----------------------HHHHHHT
T ss_pred hcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCC---eEEEEEeccch-----------------------HHHHHHc
Confidence 347899999999999999999999999999988643 67777766532 5788999
Q ss_pred CcCCCCeEEEEcCCCcccc
Q 016404 119 RVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~~ 137 (390)
++.++|+++++ ++|+++.
T Consensus 71 ~v~~~Pt~~~~-~~G~~~~ 88 (106)
T 1xwb_A 71 NISSMPTFVFL-KNGVKVE 88 (106)
T ss_dssp TCCSSSEEEEE-ETTEEEE
T ss_pred CCCcccEEEEE-cCCcEEE
Confidence 99999999888 4887764
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=101.28 Aligned_cols=70 Identities=21% Similarity=0.486 Sum_probs=59.5
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++++|+||++||++|+.+.|.|.++++++++ +.++.|++|.+ ..++++|+
T Consensus 35 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~-----------------------~~l~~~~~ 87 (125)
T 1r26_A 35 SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT----VKFAKVDADNN-----------------------SEIVSKCR 87 (125)
T ss_dssp HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC----CEEEEEECCCC-----------------------HHHHHHcC
Confidence 4689999999999999999999999999998842 66777776633 57899999
Q ss_pred cCCCCeEEEEcCCCcccc
Q 016404 120 VDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~ 137 (390)
+.++|+++++ ++|+++.
T Consensus 88 v~~~Pt~~i~-~~G~~~~ 104 (125)
T 1r26_A 88 VLQLPTFIIA-RSGKMLG 104 (125)
T ss_dssp CCSSSEEEEE-ETTEEEE
T ss_pred CCcccEEEEE-eCCeEEE
Confidence 9999999988 6888764
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-12 Score=97.70 Aligned_cols=70 Identities=23% Similarity=0.500 Sum_probs=60.0
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++++|+||++||++|+.+.|.+.++++.+++ +.++.|++|.+ ..++++|+
T Consensus 14 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~-----------------------~~~~~~~~ 66 (104)
T 2e0q_A 14 ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDEN-----------------------PDIAARYG 66 (104)
T ss_dssp HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCC-----------------------HHHHHhCC
Confidence 3689999999999999999999999999988764 66777776643 57889999
Q ss_pred cCCCCeEEEEcCCCcccc
Q 016404 120 VDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~ 137 (390)
+.++|+++++ ++|+++.
T Consensus 67 v~~~Pt~~~~-~~g~~~~ 83 (104)
T 2e0q_A 67 VMSLPTVIFF-KDGEPVD 83 (104)
T ss_dssp CCSSCEEEEE-ETTEEEE
T ss_pred ccccCEEEEE-ECCeEhh
Confidence 9999999999 6898764
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-12 Score=116.32 Aligned_cols=69 Identities=26% Similarity=0.560 Sum_probs=60.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|+|||+||++|+.+.|.|.++++.++ ..+.++.|.+|.+. +..+++.|+
T Consensus 34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~----~~~~~~~v~~d~~~---------------------~~~l~~~~~ 88 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD----GVVQVAAVNCDLNK---------------------NKALCAKYD 88 (298)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTSTT---------------------THHHHHHTT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHcc----CCcEEEEEEccCcc---------------------CHHHHHhCC
Confidence 46899999999999999999999999999987 45889999998543 478999999
Q ss_pred ccccceEEEECCCCc
Q 016404 281 IKGIPALVLIGPDGK 295 (390)
Q Consensus 281 v~~~P~~~lid~~G~ 295 (390)
|.++||+++++. |+
T Consensus 89 I~~~Pt~~~~~~-g~ 102 (298)
T 3ed3_A 89 VNGFPTLMVFRP-PK 102 (298)
T ss_dssp CCBSSEEEEEEC-CC
T ss_pred CCccceEEEEEC-Cc
Confidence 999999999964 54
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-12 Score=113.65 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=67.6
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
+.++++. +.....+|++++|+||++||++|+.+.|.|.++++++++. +.++.|++|..
T Consensus 99 v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~~~~------------------ 157 (210)
T 3apq_A 99 IITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAVNCGDD------------------ 157 (210)
T ss_dssp SEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTC------------------
T ss_pred eEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc---eEEEEEECCcc------------------
Confidence 5555666 5544467999999999999999999999999999998754 66777666532
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|++.++||++++ ++|+++.
T Consensus 158 -----~~l~~~~~v~~~Pt~~~~-~~G~~~~ 182 (210)
T 3apq_A 158 -----RMLCRMKGVNSYPSLFIF-RSGMAAV 182 (210)
T ss_dssp -----HHHHHHTTCCSSSEEEEE-CTTSCCE
T ss_pred -----HHHHHHcCCCcCCeEEEE-ECCCcee
Confidence 578999999999999999 7888754
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-12 Score=108.09 Aligned_cols=102 Identities=13% Similarity=0.194 Sum_probs=85.5
Q ss_pred cccCcc-CCCEEE-EEEecCCChhhhh-hHHHHHHHHHHHhhCCCcE-EEEEEecCCChhHHHHHHHhCCCc-ceecChh
Q 016404 35 VPLSSC-GGKTIC-LFFSANWCRPCKT-FTPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEEHFKCMPWL-AVPFDET 109 (390)
Q Consensus 35 ~~l~~~-~gk~vl-l~F~a~~C~~C~~-~~p~l~~~~~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~-~~~~~~~ 109 (390)
++|+++ +||+++ ++||+.|||+|.. ++|.|.+.+++|++.| + +|++|+.| +....++|.++.+.. .+|+..|
T Consensus 39 vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g--~d~VigIS~D-~~~~~~~f~~~~~l~~~f~lLsD 115 (176)
T 4f82_A 39 CSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG--IDEIWCVSVN-DAFVMGAWGRDLHTAGKVRMMAD 115 (176)
T ss_dssp EEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESS-CHHHHHHHHHHTTCTTTSEEEEC
T ss_pred EeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC--CCEEEEEeCC-CHHHHHHHHHHhCCCCCceEEEc
Confidence 999997 998654 5667999999999 9999999999999888 8 89999999 566788999988743 4888777
Q ss_pred HHHHHHHhcCcC------C-----CCeEEEEcCCCccccccc
Q 016404 110 LHKKLRIRYRVD------R-----IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 110 ~~~~l~~~~~v~------~-----~P~~~~~d~~G~i~~~~~ 140 (390)
.+..+++.||+. + .|+.+++ ++|+|++...
T Consensus 116 ~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~ 156 (176)
T 4f82_A 116 GSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAV 156 (176)
T ss_dssp TTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEE
T ss_pred CchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEE
Confidence 778999999973 2 4888999 8999986554
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-12 Score=99.75 Aligned_cols=69 Identities=20% Similarity=0.572 Sum_probs=59.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|+||++||++|+.+.|.|.++++++++ +.++.|++|.+ ..++++|++
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~-----------------------~~~~~~~~v 85 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDEL-----------------------KPIAEQFSV 85 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----cEEEEEECCCC-----------------------HHHHHHcCC
Confidence 689999999999999999999999999998764 56777776642 578899999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|+++++ ++|+++.
T Consensus 86 ~~~Pt~~~~-~~G~~~~ 101 (122)
T 2vlu_A 86 EAMPTFLFM-KEGDVKD 101 (122)
T ss_dssp CSSSEEEEE-ETTEEEE
T ss_pred CcccEEEEE-eCCEEEE
Confidence 999999888 5898764
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.30 E-value=7.9e-12 Score=98.42 Aligned_cols=70 Identities=30% Similarity=0.557 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.|.++++++++. +.++.|++|.+ ..++++|++
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~-----------------------~~~~~~~~i 82 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDVDTN-----------------------PETARNFQV 82 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC-----------------------HHHHHhcCC
Confidence 5899999999999999999999999999998754 67777776633 578899999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|++++++ +|+++.
T Consensus 83 ~~~Pt~~~~~-~g~~~~ 98 (121)
T 2i1u_A 83 VSIPTLILFK-DGQPVK 98 (121)
T ss_dssp CSSSEEEEEE-TTEEEE
T ss_pred CcCCEEEEEE-CCEEEE
Confidence 9999999995 888764
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-13 Score=105.53 Aligned_cols=85 Identities=22% Similarity=0.439 Sum_probs=63.5
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
+...+++ +.....++++++|+||++||++|+.+.|.+.++++++++.+.. +.++.+|.+.+
T Consensus 9 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~--v~~~~vd~~~~---------------- 70 (120)
T 1mek_A 9 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSE--IRLAKVDATEE---------------- 70 (120)
T ss_dssp EEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCC--CBCEEEETTTC----------------
T ss_pred cEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCc--EEEEEEcCCCC----------------
Confidence 3444555 4433336899999999999999999999999999998765433 44444444432
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
..++++|++.++|+++++ ++|+.+
T Consensus 71 -----~~~~~~~~v~~~Pt~~~~-~~g~~~ 94 (120)
T 1mek_A 71 -----SDLAQQYGVRGYPTIKFF-RNGDTA 94 (120)
T ss_dssp -----CSSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred -----HHHHHHCCCCcccEEEEE-eCCCcC
Confidence 467889999999999999 477754
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-13 Score=111.82 Aligned_cols=79 Identities=15% Similarity=0.429 Sum_probs=62.9
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
+.+...+||+|+|+||++||++|+.+.|.|.++++.+... +.++.|++|.+.+ .+
T Consensus 39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~~----------------------~~ 93 (164)
T 1sen_A 39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEEE----------------------PK 93 (164)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGGS----------------------CS
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCch----------------------HH
Confidence 6666778999999999999999999999999987765442 4588888775432 14
Q ss_pred HHhcCc--CCCCeEEEEcCCCccccc
Q 016404 115 RIRYRV--DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 115 ~~~~~v--~~~P~~~~~d~~G~i~~~ 138 (390)
+..|++ .++|+++++|++|+++.+
T Consensus 94 ~~~~~~~~~~~Pt~~~~d~~G~~~~~ 119 (164)
T 1sen_A 94 DEDFSPDGGYIPRILFLDPSGKVHPE 119 (164)
T ss_dssp CGGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred HHHhcccCCcCCeEEEECCCCCEEEE
Confidence 456777 669999999999998854
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-12 Score=101.88 Aligned_cols=72 Identities=24% Similarity=0.549 Sum_probs=59.4
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
+++.+|++++|+||++||++|+.+.|.++++++++ + +.++.|++|.. ..+++
T Consensus 28 l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~--~~~~~vd~~~~-----------------------~~~~~ 79 (117)
T 2xc2_A 28 LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---D--AIFVKVDVDKL-----------------------EETAR 79 (117)
T ss_dssp HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---S--SEEEEEETTTS-----------------------HHHHH
T ss_pred HHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---C--cEEEEEECCcc-----------------------HHHHH
Confidence 44457999999999999999999999999998877 2 56666666532 57899
Q ss_pred hcCcCCCCeEEEEcCCCcccc
Q 016404 117 RYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~ 137 (390)
+|++.++|+++++ ++|+++.
T Consensus 80 ~~~v~~~Pt~~~~-~~G~~~~ 99 (117)
T 2xc2_A 80 KYNISAMPTFIAI-KNGEKVG 99 (117)
T ss_dssp HTTCCSSSEEEEE-ETTEEEE
T ss_pred HcCCCccceEEEE-eCCcEEE
Confidence 9999999999888 5888764
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-12 Score=100.67 Aligned_cols=77 Identities=21% Similarity=0.446 Sum_probs=60.3
Q ss_pred CCcEEEEEEccC-------CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHH
Q 016404 201 AGKTIGLYFGAH-------WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 273 (390)
Q Consensus 201 ~gk~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (390)
+|++++|+|||+ ||++|+.+.|.|.+++++++ .++.++.|.++... .|. +.+.
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~----~~~~~~~vd~~~~~-~~~---------------d~~~ 82 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS----EGCVFIYCQVGEKP-YWK---------------DPNN 82 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC----TTEEEEEEECCCHH-HHH---------------CTTC
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcC----CCcEEEEEECCCch-hhh---------------chhH
Confidence 479999999999 99999999999999988875 46888888875321 110 1246
Q ss_pred HHHHHccccccceEEEECCCCcEE
Q 016404 274 DLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 274 ~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
.+++.|+|.++||+++++..++++
T Consensus 83 ~~~~~~~i~~~Pt~~~~~~~~~~~ 106 (123)
T 1wou_A 83 DFRKNLKVTAVPTLLKYGTPQKLV 106 (123)
T ss_dssp HHHHHHCCCSSSEEEETTSSCEEE
T ss_pred HHHHHCCCCeeCEEEEEcCCceEe
Confidence 788899999999999997744444
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-12 Score=101.56 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=62.8
Q ss_pred ceeecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCC--CcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 26 EFLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG--TELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 26 ~~l~~~~g~-~~l~-~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~--~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
..+.+++++ +... ..++++++|+||++||++|+.+.|.|.++++++++.+ ..+.++.|+++...
T Consensus 7 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~------------ 74 (121)
T 2djj_A 7 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND------------ 74 (121)
T ss_dssp CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC------------
T ss_pred CCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc------------
Confidence 346667777 6655 3478999999999999999999999999999998621 12556666554221
Q ss_pred cceecChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016404 102 LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
+++ ++.++|++++++++|++
T Consensus 75 ------------~~~--~v~~~Pt~~~~~~~~~~ 94 (121)
T 2djj_A 75 ------------VPD--EIQGFPTIKLYPAGAKG 94 (121)
T ss_dssp ------------CSS--CCSSSSEEEEECSSCTT
T ss_pred ------------ccc--ccCcCCeEEEEeCcCCC
Confidence 222 99999999999877663
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-12 Score=104.36 Aligned_cols=79 Identities=9% Similarity=0.151 Sum_probs=59.5
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHH--HHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYD--TLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHK 112 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~--~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (390)
+..+..+||+|+|+|||+||++|+.+.|.+.+..+ .+.+.. ++.|++|.+..
T Consensus 37 l~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~----fv~V~vD~e~~---------------------- 90 (151)
T 3ph9_A 37 LFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNK----FIMLNLMHETT---------------------- 90 (151)
T ss_dssp HHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHT----CEEEEESSCCS----------------------
T ss_pred HHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcC----eEEEEecCCch----------------------
Confidence 44455579999999999999999999998886432 222222 77888874321
Q ss_pred HHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 113 KLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 113 ~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.++..|++.++||+++++++|+++.+.
T Consensus 91 ~~~~~~~v~~~PT~~f~~~~G~~v~~~ 117 (151)
T 3ph9_A 91 DKNLSPDGQYVPRIMFVDPSLTVRADI 117 (151)
T ss_dssp CGGGCTTCCCSSEEEEECTTSCBCTTC
T ss_pred hhHhhcCCCCCCEEEEECCCCCEEEEE
Confidence 234678999999999999999988654
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-13 Score=105.92 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=58.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+...+||+|||+||++|+.+.+.+...++.... ...+.++.|.++.+. ...++..|+
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~--~~~~~l~~vdv~~~~---------------------~~~la~~~~ 73 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE--GRAAPVQRLQMRDPL---------------------PPGLELARP 73 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH--HHHSCEEEEETTSCC---------------------CTTCBCSSC
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh--cccceEEEEECCCCC---------------------chhHHHHCC
Confidence 346899999999999999998765544332110 123568888887642 245677899
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccC
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA 312 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~ 312 (390)
|.++||+++|+ +|+.+.+ ..|...
T Consensus 74 V~g~PT~i~f~-~G~ev~R-------i~G~~~ 97 (116)
T 3dml_A 74 VTFTPTFVLMA-GDVESGR-------LEGYPG 97 (116)
T ss_dssp CCSSSEEEEEE-TTEEEEE-------EECCCC
T ss_pred CCCCCEEEEEE-CCEEEee-------ecCCCC
Confidence 99999999997 8988887 566554
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.7e-12 Score=95.56 Aligned_cols=73 Identities=23% Similarity=0.602 Sum_probs=60.7
Q ss_pred CccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016404 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 38 ~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
++.+|++++|+||++||++|+.+.|.+.+++++++ + +.++.|++|.. ..++++
T Consensus 15 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~-----------------------~~~~~~ 67 (104)
T 2vim_A 15 NENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--E--VEFAKVDVDQN-----------------------EEAAAK 67 (104)
T ss_dssp HTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTC-----------------------HHHHHH
T ss_pred HhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--C--CEEEEEeccCC-----------------------HHHHHH
Confidence 33478999999999999999999999999999875 2 66777776632 578899
Q ss_pred cCcCCCCeEEEEcCCCccccc
Q 016404 118 YRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 118 ~~v~~~P~~~~~d~~G~i~~~ 138 (390)
|++.++|++++++ +|+++.+
T Consensus 68 ~~v~~~Pt~~~~~-~g~~~~~ 87 (104)
T 2vim_A 68 YSVTAMPTFVFIK-DGKEVDR 87 (104)
T ss_dssp TTCCSSSEEEEEE-TTEEEEE
T ss_pred cCCccccEEEEEe-CCcEEEE
Confidence 9999999999986 8887643
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=120.71 Aligned_cols=89 Identities=20% Similarity=0.421 Sum_probs=69.5
Q ss_pred eCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccC
Q 016404 189 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY 267 (390)
Q Consensus 189 ~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 267 (390)
.++++.+..... .+++|+|+|||+||++|+.+.|.+.++++++++ ...++.++.|+++.+.
T Consensus 16 ~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~-~~~~v~~~~VD~d~d~----------------- 77 (519)
T 3t58_A 16 LLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKD-WRPALNLAVLDCAEET----------------- 77 (519)
T ss_dssp EECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGG-GTTTEEEEEEETTSGG-----------------
T ss_pred ECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhC-cCCcEEEEEEECCccc-----------------
Confidence 344444443332 358999999999999999999999999999974 3347899999887532
Q ss_pred CchHHHHHHHHccccccceEEEECC---CCcEEee
Q 016404 268 EDRARQDLCRIFNIKGIPALVLIGP---DGKTIST 299 (390)
Q Consensus 268 ~~~~~~~l~~~~~v~~~P~~~lid~---~G~v~~~ 299 (390)
+..+++.|+|.++|+++++++ +|+.+..
T Consensus 78 ----~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~ 108 (519)
T 3t58_A 78 ----NSAVCREFNIAGFPTVRFFQAFTKNGSGATL 108 (519)
T ss_dssp ----GHHHHHHTTCCSBSEEEEECTTCCSCCCEEE
T ss_pred ----cHHHHHHcCCcccCEEEEEcCcccCCCceeE
Confidence 578999999999999999987 5654443
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-12 Score=98.64 Aligned_cols=70 Identities=20% Similarity=0.387 Sum_probs=58.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|+||++||++|+.+.|.|.++++.+.+ +.++.|+++.. ..++++|++
T Consensus 18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~-----------------------~~l~~~~~v 70 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ----VAISSVDSEAR-----------------------PELMKELGF 70 (110)
T ss_dssp TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTT----SCEEEEEGGGC-----------------------HHHHHHTTC
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCC----cEEEEEcCcCC-----------------------HHHHHHcCC
Confidence 579999999999999999999999999887652 55777766532 578999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++|+++++ ++|+++.+
T Consensus 71 ~~~Pt~~~~-~~G~~v~~ 87 (110)
T 2l6c_A 71 ERVPTLVFI-RDGKVAKV 87 (110)
T ss_dssp CSSCEEEEE-ESSSEEEE
T ss_pred cccCEEEEE-ECCEEEEE
Confidence 999999999 69987753
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=96.52 Aligned_cols=69 Identities=19% Similarity=0.451 Sum_probs=58.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+||+++|+||++||++|+.+.|.|.++++++++ +.++.|++|.. ..++++|++
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~----v~~~~vd~~~~-----------------------~~~~~~~~v 77 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEV-----------------------SEVTEKENI 77 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTT-----------------------HHHHHHTTC
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC----CEEEEEECCCC-----------------------HHHHHHcCC
Confidence 689999999999999999999999999998753 66777776632 578899999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|+++++. +|+++.
T Consensus 78 ~~~Pt~~~~~-~G~~~~ 93 (112)
T 1syr_A 78 TSMPTFKVYK-NGSSVD 93 (112)
T ss_dssp CSSSEEEEEE-TTEEEE
T ss_pred CcccEEEEEE-CCcEEE
Confidence 9999998885 888764
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=102.51 Aligned_cols=89 Identities=16% Similarity=0.310 Sum_probs=64.0
Q ss_pred cceeecCCCc-cc--cCccCCCEEEEEEec-------CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHH
Q 016404 25 VEFLLSRQGK-VP--LSSCGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE 94 (390)
Q Consensus 25 ~~~l~~~~g~-~~--l~~~~gk~vll~F~a-------~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 94 (390)
...++.++.. +. +..-++.+|||+||| +||++|+.+.|.|+++++.+......-.+.++.+|.+++
T Consensus 17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~---- 92 (178)
T 3ga4_A 17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEV---- 92 (178)
T ss_dssp TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTC----
T ss_pred cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccC----
Confidence 4456666666 43 222346799999999 499999999999999999997210000155555555444
Q ss_pred HHHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCc
Q 016404 95 HFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~ 134 (390)
..++++|+|+++||++++.+.+.
T Consensus 93 -----------------~~la~~~~I~siPtl~~F~~g~~ 115 (178)
T 3ga4_A 93 -----------------PQLVKDLKLQNVPHLVVYPPAES 115 (178)
T ss_dssp -----------------HHHHHHTTCCSSCEEEEECCCCG
T ss_pred -----------------HHHHHHcCCCCCCEEEEEcCCCC
Confidence 78999999999999999974443
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=99.73 Aligned_cols=83 Identities=27% Similarity=0.522 Sum_probs=58.7
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
+..++++ +.....+++.++|+||++||++|+.+.|.|.+++++++++ +.++.|++|.+
T Consensus 35 v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~------------------ 93 (140)
T 1v98_A 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVDEH------------------ 93 (140)
T ss_dssp --------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC------------------
T ss_pred cccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCCC------------------
Confidence 4555666 5544334444999999999999999999999999998754 77777776633
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|++.++|+++++ .+|+++.
T Consensus 94 -----~~l~~~~~v~~~Pt~~~~-~~G~~~~ 118 (140)
T 1v98_A 94 -----PGLAARYGVRSVPTLVLF-RRGAPVA 118 (140)
T ss_dssp -----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred -----HHHHHHCCCCccCEEEEE-eCCcEEE
Confidence 578899999999999999 5898764
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-12 Score=100.34 Aligned_cols=73 Identities=22% Similarity=0.501 Sum_probs=61.5
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++++++|+||++||++|+.+.|.|.++++++++.+ +.++.|++|.. ..++++|+
T Consensus 31 ~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--v~~~~vd~d~~-----------------------~~~~~~~~ 85 (121)
T 2j23_A 31 GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQ-----------------------SQIAQEVG 85 (121)
T ss_dssp SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHH--SEEEEEETTTC-----------------------HHHHHHHT
T ss_pred cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCc--EEEEEEECcCC-----------------------HHHHHHcC
Confidence 468999999999999999999999999999887654 66777776632 57889999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
+.++|++++++ +|+++.+
T Consensus 86 v~~~Pt~~~~~-~G~~~~~ 103 (121)
T 2j23_A 86 IRAMPTFVFFK-NGQKIDT 103 (121)
T ss_dssp CCSSSEEEEEE-TTEEEEE
T ss_pred CCcccEEEEEE-CCeEEee
Confidence 99999999995 8887654
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.3e-13 Score=102.82 Aligned_cols=71 Identities=28% Similarity=0.568 Sum_probs=60.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++++|.||++||++|+.+.|.+.+++++++ .++.++.|++|. +..+++.|+
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~-----------------------~~~~~~~~~ 70 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE----GKVKVVKVNVDE-----------------------NPNTAAQYG 70 (106)
Confidence 46899999999999999999999999999886 346666666654 357889999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++|+++++ ++|+++.+
T Consensus 71 v~~~Pt~~~~-~~g~~~~~ 88 (106)
T 2yj7_A 71 IRSIPTLLLF-KNGQVVDR 88 (106)
Confidence 9999999999 88888765
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.26 E-value=5.7e-12 Score=111.56 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=57.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++|||+|||+||++|+.+.|.|.+++++|+ ++.++.|.++. ..+++.|+
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-----~v~f~kVd~d~------------------------~~l~~~~~ 182 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP-----MVKFCKIKASN------------------------TGAGDRFS 182 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-----TSEEEEEEHHH------------------------HCCTTSSC
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----CCEEEEEeCCc------------------------HHHHHHCC
Confidence 47999999999999999999999999999985 36677666542 23566899
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+++.+
T Consensus 183 I~~~PTll~~-~~G~~v~~ 200 (245)
T 1a0r_P 183 SDVLPTLLVY-KGGELLSN 200 (245)
T ss_dssp TTTCSEEEEE-ETTEEEEE
T ss_pred CCCCCEEEEE-ECCEEEEE
Confidence 9999999999 58998876
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-12 Score=110.46 Aligned_cols=86 Identities=22% Similarity=0.457 Sum_probs=67.8
Q ss_pred cceeecCCCc-cccC-ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~-~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
......++.+ +... .-++|+++|+||++||++|+.+.|.|.+++++++++ +.++.|++|..
T Consensus 11 ~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~-------------- 73 (222)
T 3dxb_A 11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN-------------- 73 (222)
T ss_dssp SCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC--------------
T ss_pred CCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCC--------------
Confidence 3445555555 5432 225899999999999999999999999999999865 67777777643
Q ss_pred ceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 103 AVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
..++++|+|.++|++++++ +|+++.
T Consensus 74 ---------~~l~~~~~v~~~Pt~~~~~-~G~~~~ 98 (222)
T 3dxb_A 74 ---------PGTAPKYGIRGIPTLLLFK-NGEVAA 98 (222)
T ss_dssp ---------TTTGGGGTCCSBSEEEEEE-TTEEEE
T ss_pred ---------HHHHHHcCCCcCCEEEEEE-CCeEEE
Confidence 3577899999999999996 887764
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=8.6e-12 Score=96.88 Aligned_cols=72 Identities=28% Similarity=0.612 Sum_probs=60.3
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 39 ~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
..+|++++|+||++||++|+.+.|.|+++++.++ + +.++.|++|.. ..++++|
T Consensus 23 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--v~~~~v~~~~~-----------------------~~~~~~~ 75 (113)
T 1ti3_A 23 KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--N--VTFLKVDVDEL-----------------------KAVAEEW 75 (113)
T ss_dssp TTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--S--EEEEEEETTTC-----------------------HHHHHHH
T ss_pred hhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--C--cEEEEEEcccc-----------------------HHHHHhC
Confidence 3468999999999999999999999999999875 2 66777766532 5788999
Q ss_pred CcCCCCeEEEEcCCCccccc
Q 016404 119 RVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~~~ 138 (390)
++.++|+++++ ++|+++.+
T Consensus 76 ~v~~~Pt~~~~-~~G~~~~~ 94 (113)
T 1ti3_A 76 NVEAMPTFIFL-KDGKLVDK 94 (113)
T ss_dssp HCSSTTEEEEE-ETTEEEEE
T ss_pred CCCcccEEEEE-eCCEEEEE
Confidence 99999999999 58887654
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-13 Score=104.30 Aligned_cols=73 Identities=19% Similarity=0.465 Sum_probs=53.3
Q ss_pred eeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHH
Q 016404 194 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 273 (390)
Q Consensus 194 ~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (390)
.+++++..+|+++|+|||+||++|+.+.|.|.+++++++ .|-+..|... +...
T Consensus 4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~--------~v~~~~~~~~-------------------~~~~ 56 (106)
T 3kp8_A 4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPG-------------------TPQA 56 (106)
T ss_dssp HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCTTCTT-------------------SCCC
T ss_pred hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC--------EEEEeccccc-------------------chhH
Confidence 345666677889999999999999999999998876553 3333322110 0146
Q ss_pred HHHHHccccccceEEEECCCCcE
Q 016404 274 DLCRIFNIKGIPALVLIGPDGKT 296 (390)
Q Consensus 274 ~l~~~~~v~~~P~~~lid~~G~v 296 (390)
.+++.|+|.++||+++ +|++
T Consensus 57 ~l~~~~~V~~~PT~~i---~G~~ 76 (106)
T 3kp8_A 57 QECTEAGITSYPTWII---NGRT 76 (106)
T ss_dssp HHHHHTTCCSSSEEEE---TTEE
T ss_pred HHHHHcCCeEeCEEEE---CCEE
Confidence 7999999999999776 7764
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=94.00 Aligned_cols=73 Identities=12% Similarity=0.173 Sum_probs=61.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+|+|+||++|+...|.++++++. .++.++.|.+|... +....++..|||
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~------~~v~~~~vdVde~r-------------------~~Sn~IA~~~~V 78 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE------RDMDGYYLIVQQER-------------------DLSDYIAKKTNV 78 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH------HTCCEEEEEGGGGH-------------------HHHHHHHHHHTC
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc------CCceEEEEEeecCc-------------------hhhHHHHHHhCC
Confidence 48999999999999999999999999874 34778888887642 113569999999
Q ss_pred c-ccceEEEECCCCcEEeeC
Q 016404 282 K-GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 282 ~-~~P~~~lid~~G~v~~~~ 300 (390)
+ ..|+++++ ++|+++.+.
T Consensus 79 ~h~sPq~il~-k~G~~v~~~ 97 (112)
T 3iv4_A 79 KHESPQAFYF-VNGEMVWNR 97 (112)
T ss_dssp CCCSSEEEEE-ETTEEEEEE
T ss_pred ccCCCeEEEE-ECCEEEEEe
Confidence 9 59999999 999999873
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-12 Score=100.58 Aligned_cols=84 Identities=23% Similarity=0.459 Sum_probs=60.5
Q ss_pred eecCCCc-cc-cCccCCCEEEEEEecCCCh--------------hhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhH
Q 016404 28 LLSRQGK-VP-LSSCGGKTICLFFSANWCR--------------PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91 (390)
Q Consensus 28 l~~~~g~-~~-l~~~~gk~vll~F~a~~C~--------------~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 91 (390)
+..++++ +. ...-+||+++|+||++||+ +|+.+.|.+.+++++++++ +.++.|++|.+
T Consensus 5 v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~---~~~~~vd~d~~--- 78 (123)
T 1oaz_A 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN--- 78 (123)
T ss_dssp CEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSC---
T ss_pred cEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC---eEEEEEECCCC---
Confidence 3444555 43 2223689999999999999 9999999999999988754 66777776643
Q ss_pred HHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 92 FEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++|+++++ ++|+++.+
T Consensus 79 --------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 104 (123)
T 1oaz_A 79 --------------------PGTAPKYGIRGIPTLLLF-KNGEVAAT 104 (123)
T ss_dssp --------------------TTTGGGGTCCBSSEEEEE-ESSSEEEE
T ss_pred --------------------HHHHHHcCCCccCEEEEE-ECCEEEEE
Confidence 367889999999999999 79987643
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-12 Score=102.12 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=60.1
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCC
Q 016404 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRI 123 (390)
Q Consensus 44 ~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 123 (390)
+++|+||++||++|+.+.|.|.+++++++ +.++.|+++.+... ...+....++++|++.++
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~--------------~~~d~~~~l~~~~~v~~~ 93 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGE--------------RELSAARLEMNKAGVEGT 93 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCH--------------HHHHHHHHHHHHHTCCSS
T ss_pred cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhh--------------hhhhhhHHHHHHcCCcee
Confidence 99999999999999999999999988764 55888888643221 012335789999999999
Q ss_pred CeEEEEcCCCccccc
Q 016404 124 PSLIPLASDGTLIEE 138 (390)
Q Consensus 124 P~~~~~d~~G~i~~~ 138 (390)
||+++++ +|+++.+
T Consensus 94 Pt~~~~~-~G~~v~~ 107 (135)
T 3emx_A 94 PTLVFYK-EGRIVDK 107 (135)
T ss_dssp SEEEEEE-TTEEEEE
T ss_pred CeEEEEc-CCEEEEE
Confidence 9999997 9987754
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-12 Score=98.52 Aligned_cols=67 Identities=9% Similarity=0.127 Sum_probs=55.4
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++|+|+||++||++|+.+.|.|+++++++.+ +.++-|++| + .+++|+|+
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~----v~f~kvd~d--~------------------------~~~~~~v~ 72 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE----TKFVKAIVN--S------------------------CIQHYHDN 72 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT----SEEEEEEGG--G------------------------TSTTCCGG
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----CEEEEEEhH--H------------------------hHHHCCCC
Confidence 55999999999999999999999999999863 556666655 1 13789999
Q ss_pred CCCeEEEEcCCCcccccc
Q 016404 122 RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 122 ~~P~~~~~d~~G~i~~~~ 139 (390)
++||++++. +|+.+.+-
T Consensus 73 ~~PT~~~fk-~G~~v~~~ 89 (118)
T 3evi_A 73 CLPTIFVYK-NGQIEAKF 89 (118)
T ss_dssp GCSEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEE-CCEEEEEE
Confidence 999999995 99887553
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=97.16 Aligned_cols=70 Identities=24% Similarity=0.619 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+|++++|+||++||++|+.+.|.|.+++++++ + +.++.|++|.. ..++++|++
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~-----------------------~~~~~~~~v 79 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--G--AIFLKVDVDEL-----------------------KDVAEAYNV 79 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--C--cEEEEEEcccC-----------------------HHHHHHcCC
Confidence 58999999999999999999999999999886 2 66777766532 578899999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++|+++++ ++|+++.+
T Consensus 80 ~~~Pt~~~~-~~g~~~~~ 96 (118)
T 2vm1_A 80 EAMPTFLFI-KDGEKVDS 96 (118)
T ss_dssp CSBSEEEEE-ETTEEEEE
T ss_pred CcCcEEEEE-eCCeEEEE
Confidence 999999999 58887643
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=97.79 Aligned_cols=78 Identities=18% Similarity=0.432 Sum_probs=59.4
Q ss_pred CccCCCEEEEEEecC-------CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhH
Q 016404 38 SSCGGKTICLFFSAN-------WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETL 110 (390)
Q Consensus 38 ~~~~gk~vll~F~a~-------~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 110 (390)
....|++++|+||++ ||++|+.+.|.|.++++++++. +.++.|+++... .+ .+.
T Consensus 20 ~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~-~~---------------~d~ 80 (123)
T 1wou_A 20 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKP-YW---------------KDP 80 (123)
T ss_dssp HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHH-HH---------------HCT
T ss_pred HHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCC---cEEEEEECCCch-hh---------------hch
Confidence 334589999999999 9999999999999999887643 777777775321 00 011
Q ss_pred HHHHHHhcCcCCCCeEEEEcCCCc
Q 016404 111 HKKLRIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 111 ~~~l~~~~~v~~~P~~~~~d~~G~ 134 (390)
...++++|++.++||++++++.++
T Consensus 81 ~~~~~~~~~i~~~Pt~~~~~~~~~ 104 (123)
T 1wou_A 81 NNDFRKNLKVTAVPTLLKYGTPQK 104 (123)
T ss_dssp TCHHHHHHCCCSSSEEEETTSSCE
T ss_pred hHHHHHHCCCCeeCEEEEEcCCce
Confidence 257888899999999999986333
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=98.58 Aligned_cols=68 Identities=9% Similarity=0.126 Sum_probs=54.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+|++++|+||++||++|+.+.|.|.++++++.+ +.++.|+++ .. .++|+|
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~----v~~~~vd~~--~~------------------------~~~~~i 78 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPE----TKFVKAIVN--SC------------------------IEHYHD 78 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSS----EEEEEECCS--SS------------------------CSSCCS
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC----cEEEEEEhh--cC------------------------cccCCC
Confidence 468999999999999999999999999998742 555555544 21 057999
Q ss_pred CCCCeEEEEcCCCcccccc
Q 016404 121 DRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~ 139 (390)
.++||+++++ +|+++.+.
T Consensus 79 ~~~Pt~~~~~-~G~~v~~~ 96 (135)
T 2dbc_A 79 NCLPTIFVYK-NGQIEGKF 96 (135)
T ss_dssp SCCSEEEEES-SSSCSEEE
T ss_pred CCCCEEEEEE-CCEEEEEE
Confidence 9999999996 89887543
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-12 Score=103.01 Aligned_cols=70 Identities=26% Similarity=0.566 Sum_probs=58.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|+||++||++|+.+.|.|.+++++++ ++.++.|++|. +..+++.|+
T Consensus 35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~v~~~~-----------------------~~~~~~~~~ 86 (130)
T 1wmj_A 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-----GAVFLKVDVDE-----------------------LKEVAEKYN 86 (130)
T ss_dssp TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-----TBCCEECCTTT-----------------------SGGGHHHHT
T ss_pred cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----CCEEEEEeccc-----------------------hHHHHHHcC
Confidence 47899999999999999999999999999874 36666666654 356888999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|+++++ ++|+++.+
T Consensus 87 v~~~Pt~~~~-~~g~~~~~ 104 (130)
T 1wmj_A 87 VEAMPTFLFI-KDGAEADK 104 (130)
T ss_dssp CCSSCCCCBC-TTTTCCBC
T ss_pred CCccceEEEE-eCCeEEEE
Confidence 9999998887 88888765
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-11 Score=91.58 Aligned_cols=74 Identities=9% Similarity=0.197 Sum_probs=61.7
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+++++|+|+|+|||+|+...|.++++++. .+ +.++.|.+|..++ ....++++|||+
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~---v~~~~vdVde~r~-------------------~Sn~IA~~~~V~ 79 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE--RD---MDGYYLIVQQERD-------------------LSDYIAKKTNVK 79 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH--HT---CCEEEEEGGGGHH-------------------HHHHHHHHHTCC
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc--CC---ceEEEEEeecCch-------------------hhHHHHHHhCCc
Confidence 89999999999999999999999999884 22 6799998885542 125799999999
Q ss_pred C-CCeEEEEcCCCccccccc
Q 016404 122 R-IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 122 ~-~P~~~~~d~~G~i~~~~~ 140 (390)
+ .|+++++. +|+.+.+..
T Consensus 80 h~sPq~il~k-~G~~v~~~S 98 (112)
T 3iv4_A 80 HESPQAFYFV-NGEMVWNRD 98 (112)
T ss_dssp CCSSEEEEEE-TTEEEEEEE
T ss_pred cCCCeEEEEE-CCEEEEEee
Confidence 5 99999995 999886543
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=107.34 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=57.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+|++|||+||++||++|+.+.|.|.+++++|+ ++.++.|.++ +..+++.|+
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-----~v~f~~vd~~------------------------~~~l~~~~~ 169 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-----MVKFCKIRAS------------------------NTGAGDRFS 169 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-----TSEEEEEEHH------------------------HHTCSTTSC
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-----CeEEEEEECC------------------------cHHHHHHCC
Confidence 45899999999999999999999999998874 4667777654 144667899
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+++.+
T Consensus 170 i~~~PTl~~~-~~G~~v~~ 187 (217)
T 2trc_P 170 SDVLPTLLVY-KGGELISN 187 (217)
T ss_dssp GGGCSEEEEE-ETTEEEEE
T ss_pred CCCCCEEEEE-ECCEEEEE
Confidence 9999999999 68988766
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.9e-11 Score=114.20 Aligned_cols=86 Identities=20% Similarity=0.285 Sum_probs=65.9
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhccc--CCceEEEEEecCCCHHHHHHhhhcCCccccc
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA--NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 266 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 266 (390)
.++++.+...--++++++|+|||+||++|+.+.|.+.++++.+++.. ..++.++.|.++.
T Consensus 9 ~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~------------------ 70 (382)
T 2r2j_A 9 SLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ------------------ 70 (382)
T ss_dssp BCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT------------------
T ss_pred ECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc------------------
Confidence 44444444322246899999999999999999999999999996311 2457777777764
Q ss_pred CCchHHHHHHHHccccccceEEEECCCCcEEe
Q 016404 267 YEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 298 (390)
Q Consensus 267 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 298 (390)
+..++++|+|.++||++++ ++|+++.
T Consensus 71 -----~~~l~~~~~v~~~Pt~~~f-~~G~~~~ 96 (382)
T 2r2j_A 71 -----HSDIAQRYRISKYPTLKLF-RNGMMMK 96 (382)
T ss_dssp -----CHHHHHHTTCCEESEEEEE-ETTEEEE
T ss_pred -----cHHHHHhcCCCcCCEEEEE-eCCcEee
Confidence 3689999999999999998 6787764
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.4e-13 Score=102.39 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=53.3
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
++|++..||+++|+|||+||++|+.+.|.|.+++++++ .+-+..|... +....+
T Consensus 5 ~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-------~v~~~~~~~~-------------------~~~~~l 58 (106)
T 3kp8_A 5 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-------YVECSPNGPG-------------------TPQAQE 58 (106)
T ss_dssp HHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-------EEESCTTCTT-------------------SCCCHH
T ss_pred hHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-------EEEEeccccc-------------------chhHHH
Confidence 67777888999999999999999999999998876542 3333322210 012689
Q ss_pred HHhcCcCCCCeEEEEcCCCc
Q 016404 115 RIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~ 134 (390)
+++|+|+++||+++ +|+
T Consensus 59 ~~~~~V~~~PT~~i---~G~ 75 (106)
T 3kp8_A 59 CTEAGITSYPTWII---NGR 75 (106)
T ss_dssp HHHTTCCSSSEEEE---TTE
T ss_pred HHHcCCeEeCEEEE---CCE
Confidence 99999999999777 665
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.8e-11 Score=99.86 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=63.8
Q ss_pred CceEEeCCCCeeeec--ccCCcEEEEEEcc-------CCCcccHhhHHHHHHHHHHhhcc-cCCceEEEEEecCCCHHHH
Q 016404 184 RDYVLSRDHRKITVS--ELAGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRDHKEF 253 (390)
Q Consensus 184 p~f~l~~~g~~~~l~--~~~gk~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~-~~~~~~vv~v~~d~~~~~~ 253 (390)
++..+.++...+.-- .-++.+|||+||| .||++|+.+.|.|++++++|... ...++.++.|.+|.
T Consensus 17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~----- 91 (178)
T 3ga4_A 17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE----- 91 (178)
T ss_dssp TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-----
T ss_pred cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc-----
Confidence 344445555555421 1234689999999 49999999999999999999621 11356676666664
Q ss_pred HHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCC
Q 016404 254 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPD 293 (390)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~ 293 (390)
+..++++|||+++||++++-+.
T Consensus 92 ------------------~~~la~~~~I~siPtl~~F~~g 113 (178)
T 3ga4_A 92 ------------------VPQLVKDLKLQNVPHLVVYPPA 113 (178)
T ss_dssp ------------------CHHHHHHTTCCSSCEEEEECCC
T ss_pred ------------------CHHHHHHcCCCCCCEEEEEcCC
Confidence 4789999999999999999443
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=7e-11 Score=84.99 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=51.8
Q ss_pred EEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccccc
Q 016404 205 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 284 (390)
Q Consensus 205 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 284 (390)
+.|.||++||++|+.+.|.+.++.+++. .++.++.|+ + .+++++|+|.++
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~----~~~~~~~v~---~-----------------------~~~~~~~~v~~~ 51 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELG----IDAEFEKIK---E-----------------------MDQILEAGLTAL 51 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTT----CCEEEEEEC---S-----------------------HHHHHHHTCSSS
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcC----CceEEEEec---C-----------------------HHHHHHCCCCcC
Confidence 3589999999999999999999999886 456666654 1 567889999999
Q ss_pred ceEEEECCCCcEEee
Q 016404 285 PALVLIGPDGKTIST 299 (390)
Q Consensus 285 P~~~lid~~G~v~~~ 299 (390)
|++++ +|+++.+
T Consensus 52 Pt~~~---~G~~~~~ 63 (77)
T 1ilo_A 52 PGLAV---DGELKIM 63 (77)
T ss_dssp SCEEE---TTEEEEC
T ss_pred CEEEE---CCEEEEc
Confidence 99988 8988766
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-11 Score=88.92 Aligned_cols=64 Identities=16% Similarity=0.403 Sum_probs=54.2
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCC
Q 016404 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDR 122 (390)
Q Consensus 43 k~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 122 (390)
.++++.||++||++|+.+.|.|++++++++++ +.++.|++|.+ ..++++|++.+
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~~ 56 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN-----------------------PQKAMEYGIMA 56 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSS-----------------------CCTTTSTTTCC
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCc---eEEEEEECCCC-----------------------HHHHHHCCCcc
Confidence 57899999999999999999999999988743 78888887743 25678899999
Q ss_pred CCeEEEEcCCCcc
Q 016404 123 IPSLIPLASDGTL 135 (390)
Q Consensus 123 ~P~~~~~d~~G~i 135 (390)
+|++++ +|++
T Consensus 57 ~Pt~~~---~G~~ 66 (85)
T 1fo5_A 57 VPTIVI---NGDV 66 (85)
T ss_dssp SSEEEE---TTEE
T ss_pred cCEEEE---CCEE
Confidence 999998 6765
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-11 Score=99.41 Aligned_cols=70 Identities=14% Similarity=0.272 Sum_probs=48.9
Q ss_pred CCCEEEEEEecCC--ChhhhhhHHHHHHHHHHHhhCCCcEE--EEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHH
Q 016404 41 GGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELE--VIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRI 116 (390)
Q Consensus 41 ~gk~vll~F~a~~--C~~C~~~~p~l~~~~~~~~~~~~~~~--vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (390)
.++.++|+|+++| |++|+.+.|.|.++++++ ++ +. ++.|++| + ...+++
T Consensus 33 ~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~d--~---------------------~~~la~ 85 (142)
T 2es7_A 33 RVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADLE--Q---------------------SEAIGD 85 (142)
T ss_dssp -CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECHH--H---------------------HHHHHH
T ss_pred hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEECC--C---------------------CHHHHH
Confidence 3455788999887 999999999999999988 43 45 5555443 3 268999
Q ss_pred hcCcCCCCeEEEEcCCCccccc
Q 016404 117 RYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 117 ~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
+|+|.++||++++ ++|+++.+
T Consensus 86 ~~~V~~iPT~~~f-k~G~~v~~ 106 (142)
T 2es7_A 86 RFNVRRFPATLVF-TDGKLRGA 106 (142)
T ss_dssp TTTCCSSSEEEEE-SCC----C
T ss_pred hcCCCcCCeEEEE-eCCEEEEE
Confidence 9999999999999 69987754
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.9e-12 Score=97.38 Aligned_cols=70 Identities=26% Similarity=0.642 Sum_probs=57.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|.||++||++|+.+.|.+.+++++++++ +.++.|++| .+ ..++++|++
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~--~~---------------------~~~~~~~~v 71 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNVD--EN---------------------PNTAAQYGI 71 (106)
Confidence 5899999999999999999999999999988753 455555444 32 578899999
Q ss_pred CCCCeEEEEcCCCcccc
Q 016404 121 DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~ 137 (390)
.++|+++++ ++|+++.
T Consensus 72 ~~~Pt~~~~-~~g~~~~ 87 (106)
T 2yj7_A 72 RSIPTLLLF-KNGQVVD 87 (106)
Confidence 999999999 6888764
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-11 Score=88.55 Aligned_cols=63 Identities=16% Similarity=0.284 Sum_probs=52.8
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCC
Q 016404 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRI 123 (390)
Q Consensus 44 ~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 123 (390)
++++.||++||++|+.+.|.|++++++++++ +.++.|++|.+ ..++++|++.++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~~~ 56 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVD-----------------------REKAIEYGLMAV 56 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTC-----------------------GGGGGGTCSSCS
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCC---eEEEEEECCCC-----------------------HHHHHhCCceee
Confidence 4689999999999999999999999998753 66777777643 357789999999
Q ss_pred CeEEEEcCCCcc
Q 016404 124 PSLIPLASDGTL 135 (390)
Q Consensus 124 P~~~~~d~~G~i 135 (390)
|++++ +|++
T Consensus 57 Pt~~~---~G~~ 65 (85)
T 1nho_A 57 PAIAI---NGVV 65 (85)
T ss_dssp SEEEE---TTTE
T ss_pred CEEEE---CCEE
Confidence 99998 6765
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=83.80 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=50.8
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCC
Q 016404 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124 (390)
Q Consensus 45 vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 124 (390)
+.|.||++||++|+.+.|.+++++++++.. +.++.|+ + ..++++|++.++|
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~---~~~~~v~-----~---------------------~~~~~~~~v~~~P 52 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGID---AEFEKIK-----E---------------------MDQILEAGLTALP 52 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTCC---EEEEEEC-----S---------------------HHHHHHHTCSSSS
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCCc---eEEEEec-----C---------------------HHHHHHCCCCcCC
Confidence 468999999999999999999999988643 5555554 1 5788999999999
Q ss_pred eEEEEcCCCccccc
Q 016404 125 SLIPLASDGTLIEE 138 (390)
Q Consensus 125 ~~~~~d~~G~i~~~ 138 (390)
++++ +|+++.+
T Consensus 53 t~~~---~G~~~~~ 63 (77)
T 1ilo_A 53 GLAV---DGELKIM 63 (77)
T ss_dssp CEEE---TTEEEEC
T ss_pred EEEE---CCEEEEc
Confidence 9998 7877644
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-12 Score=97.94 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=55.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+...+||+|||+||++|+.+.+.+...++.... +..+.++.|+++.+.. ..++.+|+|
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~~---------------------~~la~~~~V 74 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLP---------------------PGLELARPV 74 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCCC---------------------TTCBCSSCC
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCCc---------------------hhHHHHCCC
Confidence 457899999999999999998766555443110 0114588888886542 466788999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||+++|+ +|+.+.+
T Consensus 75 ~g~PT~i~f~-~G~ev~R 91 (116)
T 3dml_A 75 TFTPTFVLMA-GDVESGR 91 (116)
T ss_dssp CSSSEEEEEE-TTEEEEE
T ss_pred CCCCEEEEEE-CCEEEee
Confidence 9999999998 9988764
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-10 Score=112.64 Aligned_cols=69 Identities=22% Similarity=0.487 Sum_probs=59.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++++++|.|||+||++|+.+.|.+.++++.+++ .++.++.|.++.. ..++++|+
T Consensus 30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~---~~v~~~~vd~~~~-----------------------~~l~~~~~ 83 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE---KNITLAQIDCTEN-----------------------QDLCMEHN 83 (504)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcc---CCeEEEEEECCCC-----------------------HHHHHhcC
Confidence 578999999999999999999999999999974 3688888887753 67999999
Q ss_pred ccccceEEEECCCCcE
Q 016404 281 IKGIPALVLIGPDGKT 296 (390)
Q Consensus 281 v~~~P~~~lid~~G~v 296 (390)
|.++||++++ ++|++
T Consensus 84 v~~~Pt~~~~-~~g~~ 98 (504)
T 2b5e_A 84 IPGFPSLKIF-KNSDV 98 (504)
T ss_dssp CCSSSEEEEE-ETTCT
T ss_pred CCcCCEEEEE-eCCcc
Confidence 9999999999 45553
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-11 Score=98.37 Aligned_cols=71 Identities=23% Similarity=0.572 Sum_probs=58.3
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.+|++++|+||++||++|+.+.|.|.++++++++ +.++.|++|.. ..++++|+
T Consensus 34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~v~~~~~-----------------------~~~~~~~~ 86 (130)
T 1wmj_A 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG----AVFLKVDVDEL-----------------------KEVAEKYN 86 (130)
T ss_dssp TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTT----BCCEECCTTTS-----------------------GGGHHHHT
T ss_pred hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCC----CEEEEEeccch-----------------------HHHHHHcC
Confidence 4689999999999999999999999999998862 55666655432 46788999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
+.++|+++++ ++|+++.+
T Consensus 87 v~~~Pt~~~~-~~g~~~~~ 104 (130)
T 1wmj_A 87 VEAMPTFLFI-KDGAEADK 104 (130)
T ss_dssp CCSSCCCCBC-TTTTCCBC
T ss_pred CCccceEEEE-eCCeEEEE
Confidence 9999999988 68887643
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.09 E-value=5.9e-11 Score=105.04 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=57.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+|++|||.||++||++|+.+.|.|.++++++.+ +.++.|+++. ..++..|+|
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~----v~f~kVd~d~------------------------~~l~~~~~I 183 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYPM----VKFCKIKASN------------------------TGAGDRFSS 183 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT----SEEEEEEHHH------------------------HCCTTSSCT
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC----CEEEEEeCCc------------------------HHHHHHCCC
Confidence 589999999999999999999999999999864 5566665431 246678999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||++++. +|+++.+
T Consensus 184 ~~~PTll~~~-~G~~v~~ 200 (245)
T 1a0r_P 184 DVLPTLLVYK-GGELLSN 200 (245)
T ss_dssp TTCSEEEEEE-TTEEEEE
T ss_pred CCCCEEEEEE-CCEEEEE
Confidence 9999999996 8988754
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-10 Score=110.17 Aligned_cols=84 Identities=11% Similarity=0.244 Sum_probs=63.1
Q ss_pred eecCCCc-cc--cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCC-----cEEEEEEecCCChhHHHHHHHhC
Q 016404 28 LLSRQGK-VP--LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-----ELEVIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 28 l~~~~g~-~~--l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~-----~~~vv~v~~d~~~~~~~~~~~~~ 99 (390)
+..+++. +. +....+|+|||+|||+||++|+.+.|.|.++++++++... .+.++.|++|..
T Consensus 25 V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~----------- 93 (470)
T 3qcp_A 25 VVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE----------- 93 (470)
T ss_dssp EEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC-----------
T ss_pred cEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC-----------
Confidence 4444444 33 2223458999999999999999999999999999874321 366666666532
Q ss_pred CCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCc
Q 016404 100 PWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~ 134 (390)
..++++|+|.++||+++++++|.
T Consensus 94 ------------~~la~~y~V~~~PTlilf~~gg~ 116 (470)
T 3qcp_A 94 ------------VDLCRKYDINFVPRLFFFYPRDS 116 (470)
T ss_dssp ------------HHHHHHTTCCSSCEEEEEEESSC
T ss_pred ------------HHHHHHcCCCccCeEEEEECCCc
Confidence 58999999999999999975553
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-10 Score=106.60 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=58.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHH-------HHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQ-------LIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 273 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~-------l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (390)
++++++|+|||+||+ |+.+.|. +.++++.+++ .++.++.|.++. ..
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~---~~v~~~~Vd~~~-----------------------~~ 79 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEH---KDIGFVMVDAKK-----------------------EA 79 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGG---SSEEEEEEETTT-----------------------TH
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhh---cCcEEEEEeCCC-----------------------CH
Confidence 468999999999999 9999998 8888888874 468888887775 36
Q ss_pred HHHHHccccccceEEEECCCCcEE
Q 016404 274 DLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 274 ~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
.++++|+|.++||++++ ++|++.
T Consensus 80 ~l~~~~~v~~~Pt~~~~-~~g~~~ 102 (350)
T 1sji_A 80 KLAKKLGFDEEGSLYVL-KGDRTI 102 (350)
T ss_dssp HHHHHHTCCSTTEEEEE-ETTEEE
T ss_pred HHHHhcCCCccceEEEE-ECCcEE
Confidence 79999999999999999 777754
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=101.07 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=57.5
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCC-CcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG-TELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
..+++++|.||++||++|+.+.|.|.++++++++.+ .++.++.|++|.. ..++++|
T Consensus 132 ~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~ 188 (226)
T 1a8l_A 132 IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY-----------------------PEWADQY 188 (226)
T ss_dssp CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC-----------------------HHHHHHT
T ss_pred cCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccC-----------------------HHHHHhC
Confidence 345566999999999999999999999999997320 1266666665522 5789999
Q ss_pred CcCCCCeEEEEcCCCccc
Q 016404 119 RVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~ 136 (390)
+|.++|+++++. +|+.+
T Consensus 189 ~v~~~Pt~~~~~-~G~~~ 205 (226)
T 1a8l_A 189 NVMAVPKIVIQV-NGEDR 205 (226)
T ss_dssp TCCSSCEEEEEE-TTEEE
T ss_pred CCcccCeEEEEe-CCcee
Confidence 999999998885 88765
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=111.31 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=59.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccC----CceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTAN----HCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~----~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
.+|+|||+|||+||++|+.+.|.+.+++++|+...+ ..+.++.|++|.. ..++
T Consensus 41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~-----------------------~~la 97 (470)
T 3qcp_A 41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE-----------------------VDLC 97 (470)
T ss_dssp GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC-----------------------HHHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC-----------------------HHHH
Confidence 348999999999999999999999999999874111 1488888888753 6899
Q ss_pred HHccccccceEEEECCCCc
Q 016404 277 RIFNIKGIPALVLIGPDGK 295 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~G~ 295 (390)
++|+|.++||+++++++|.
T Consensus 98 ~~y~V~~~PTlilf~~gg~ 116 (470)
T 3qcp_A 98 RKYDINFVPRLFFFYPRDS 116 (470)
T ss_dssp HHTTCCSSCEEEEEEESSC
T ss_pred HHcCCCccCeEEEEECCCc
Confidence 9999999999999976553
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-10 Score=95.95 Aligned_cols=109 Identities=14% Similarity=0.226 Sum_probs=87.4
Q ss_pred ceeecCCC--c-cccCc-cCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEE-EEEEecCCChhHHHHHHHhC
Q 016404 26 EFLLSRQG--K-VPLSS-CGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELE-VIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 26 ~~l~~~~g--~-~~l~~-~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~-vv~v~~d~~~~~~~~~~~~~ 99 (390)
++|. .+| + ++|++ ++||+++|+|| +.|||.|..+++.+.+.++++++.| ++ |++||.| +..+.++|.++.
T Consensus 23 f~l~-~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g--v~~VigIS~D-~~~~~~~w~~~~ 98 (171)
T 2xhf_A 23 VLVY-EDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG--YHTIACIAVN-DPFVMAAWGKTV 98 (171)
T ss_dssp CEEE-CSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT--CCEEEEEESS-CHHHHHHHHHHH
T ss_pred eEEe-cCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CCEEEEEeCC-CHHHHHHHHHhc
Confidence 3466 444 7 99999 59999999998 6799999999999999999999887 85 9999999 555667777766
Q ss_pred CC-cceecChhHHHHHHHhcCcC-----------CCCeEEEEcCCCcccccc
Q 016404 100 PW-LAVPFDETLHKKLRIRYRVD-----------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 100 ~~-~~~~~~~~~~~~l~~~~~v~-----------~~P~~~~~d~~G~i~~~~ 139 (390)
.. ..+|+..|.+.++++.||+. .....+++| +|+|++..
T Consensus 99 ~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~ 149 (171)
T 2xhf_A 99 DPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVS 149 (171)
T ss_dssp CTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred CCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEE
Confidence 53 26788777889999999974 235678888 99987654
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-10 Score=97.54 Aligned_cols=102 Identities=13% Similarity=0.186 Sum_probs=84.9
Q ss_pred c-cccCc-cCCCEEEEEEe-cCCChhhh-hhHHHHHHHHHHH-hhCCCcEE-EEEEecCCChhHHHHHHHhCCCcceecC
Q 016404 34 K-VPLSS-CGGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTL-RTRGTELE-VIFISFDHDENGFEEHFKCMPWLAVPFD 107 (390)
Q Consensus 34 ~-~~l~~-~~gk~vll~F~-a~~C~~C~-~~~p~l~~~~~~~-~~~~~~~~-vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 107 (390)
+ ++|++ ++||+++|+|| +.|||.|. .+++.+.+.++++ ++.| ++ |++||.| +..+.++|.+++....+|+.
T Consensus 33 ~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g--~~~V~gvS~D-~~~~~~~~~~~~~~~~f~lL 109 (182)
T 1xiy_A 33 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN--FDDIYCITNN-DIYVLKSWFKSMDIKKIKYI 109 (182)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--CSEEEEEESS-CHHHHHHHHHHTTCCSSEEE
T ss_pred eeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeCC-CHHHHHHHHHHcCCCCceEE
Confidence 7 99998 69999999887 78999999 9999999999999 8877 74 9999998 55567788887773357887
Q ss_pred hhHHHHHHHhcCcC-----------CCCeEEEEcCCCcccccc
Q 016404 108 ETLHKKLRIRYRVD-----------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 108 ~~~~~~l~~~~~v~-----------~~P~~~~~d~~G~i~~~~ 139 (390)
.|.+.++++.||+. .....+++| +|+|++..
T Consensus 110 sD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~ 151 (182)
T 1xiy_A 110 SDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF 151 (182)
T ss_dssp ECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred EeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEE
Confidence 77889999999973 246788888 99988654
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.03 E-value=9.6e-11 Score=102.19 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=57.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+|++|+|.||++||++|+.+.|.|.++++++.+ +.++.|+++ + ..++..|++
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~----v~f~~vd~~---~---------------------~~l~~~~~i 170 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM----VKFCKIRAS---N---------------------TGAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT----SEEEEEEHH---H---------------------HTCSTTSCG
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCCC----eEEEEEECC---c---------------------HHHHHHCCC
Confidence 469999999999999999999999999998852 566666654 2 457788999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||++++. +|+++.+
T Consensus 171 ~~~PTl~~~~-~G~~v~~ 187 (217)
T 2trc_P 171 DVLPTLLVYK-GGELISN 187 (217)
T ss_dssp GGCSEEEEEE-TTEEEEE
T ss_pred CCCCEEEEEE-CCEEEEE
Confidence 9999999996 8987643
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-10 Score=100.31 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=56.8
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCC-CcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHh
Q 016404 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG-TELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIR 117 (390)
Q Consensus 39 ~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (390)
++.|+++++.||++||++|+.+.|.|++++..++..+ .++.+..|+++.. ..++++
T Consensus 135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~ 191 (243)
T 2hls_A 135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYEN-----------------------PDIADK 191 (243)
T ss_dssp HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTC-----------------------HHHHHH
T ss_pred HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccC-----------------------HHHHHH
Confidence 4678999999999999999999999999999985211 1266666655432 578899
Q ss_pred cCcCCCCeEEEEcCCCccc
Q 016404 118 YRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 118 ~~v~~~P~~~~~d~~G~i~ 136 (390)
|+|.++||+++ +|+++
T Consensus 192 ~~V~~vPt~~i---~G~~~ 207 (243)
T 2hls_A 192 YGVMSVPSIAI---NGYLV 207 (243)
T ss_dssp TTCCSSSEEEE---TTEEE
T ss_pred cCCeeeCeEEE---CCEEE
Confidence 99999999988 67654
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=88.23 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=53.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
.+|+|+|+|+++||.+|+.+.... .++.+.++ .++.++.+..+.. ....+.+
T Consensus 41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~----~~fv~v~~d~~~~---------------------~~~~l~~ 95 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR----EHFIFWQVYHDSE---------------------EGQRYIQ 95 (153)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH----HTEEEEEEESSSH---------------------HHHHHHH
T ss_pred cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHH----cCeEEEEEecCCH---------------------hHHHHHH
Confidence 369999999999999999986544 44444443 2344444444321 2467889
Q ss_pred HccccccceEEEECCC-CcEEee
Q 016404 278 IFNIKGIPALVLIGPD-GKTIST 299 (390)
Q Consensus 278 ~~~v~~~P~~~lid~~-G~v~~~ 299 (390)
.|++.++|++++||++ |+.+.+
T Consensus 96 ~y~v~~~P~~~fld~~~G~~l~~ 118 (153)
T 2dlx_A 96 FYKLGDFPYVSILDPRTGQKLVE 118 (153)
T ss_dssp HHTCCSSSEEEEECTTTCCCCEE
T ss_pred HcCCCCCCEEEEEeCCCCcEeee
Confidence 9999999999999998 876544
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=88.63 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=56.8
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
+..+..+||+|+|+|+++||..|+.+.... .++.+.++++ +|.|.+|.+.. ..
T Consensus 35 l~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~-----fv~v~~d~~~~-------------------~~ 90 (153)
T 2dlx_A 35 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH-----FIFWQVYHDSE-------------------EG 90 (153)
T ss_dssp HHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT-----EEEEEEESSSH-------------------HH
T ss_pred HHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC-----eEEEEEecCCH-------------------hH
Confidence 333444699999999999999999987654 4555555444 45555443221 13
Q ss_pred HHHHHhcCcCCCCeEEEEcCC-Ccccc
Q 016404 112 KKLRIRYRVDRIPSLIPLASD-GTLIE 137 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~~-G~i~~ 137 (390)
..+.++|++.++|+++++|++ |+.+.
T Consensus 91 ~~l~~~y~v~~~P~~~fld~~~G~~l~ 117 (153)
T 2dlx_A 91 QRYIQFYKLGDFPYVSILDPRTGQKLV 117 (153)
T ss_dssp HHHHHHHTCCSSSEEEEECTTTCCCCE
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCcEee
Confidence 678899999999999999998 76653
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-09 Score=99.18 Aligned_cols=70 Identities=10% Similarity=0.076 Sum_probs=55.7
Q ss_pred CCcEEEEEEccCCCcccHhhH------HHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFT------SQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 274 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (390)
++++|+|+|||+||++|+... |.+..+++.++. .++.++.|.++. ...
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~---~~v~~~~Vd~~~-----------------------~~~ 82 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED---KGVGFGLVDSEK-----------------------DAA 82 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTT---TTEEEEEEETTT-----------------------THH
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhc---CCceEEEEeCcc-----------------------cHH
Confidence 358999999999999974332 578888888864 467887777765 378
Q ss_pred HHHHccccccceEEEECCCCcEE
Q 016404 275 LCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 275 l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
++++|+|+++||++++ ++|+++
T Consensus 83 l~~~~~V~~~PTl~~f-~~G~~~ 104 (367)
T 3us3_A 83 VAKKLGLTEEDSIYVF-KEDEVI 104 (367)
T ss_dssp HHHHHTCCSTTEEEEE-ETTEEE
T ss_pred HHHHcCCCcCceEEEE-ECCcEE
Confidence 9999999999999999 467664
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-08 Score=98.14 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+++.++.||++||++|+...|.|+++...++ ++.+..|..|. ..+++++|+
T Consensus 116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-----~v~~~~vd~~~-----------------------~~~~~~~~~ 167 (521)
T 1hyu_A 116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-----RIKHTAIDGGT-----------------------FQNEITERN 167 (521)
T ss_dssp CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-----TEEEEEEETTT-----------------------CHHHHHHTT
T ss_pred CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-----ceEEEEEechh-----------------------hHHHHHHhC
Confidence 35678999999999999999999999988763 57777777664 478999999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++|++++ +|+.+..
T Consensus 168 i~svPt~~i---~g~~~~~ 183 (521)
T 1hyu_A 168 VMGVPAVFV---NGKEFGQ 183 (521)
T ss_dssp CCSSSEEEE---TTEEEEE
T ss_pred CCccCEEEE---CCEEEec
Confidence 999999977 8888755
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-09 Score=83.72 Aligned_cols=67 Identities=10% Similarity=0.198 Sum_probs=56.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+|||+ |++|+.+.|.|.+++++|+ .++.++.|++|. ...+++.|||
T Consensus 23 ~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~----gk~~f~~vd~d~-----------------------~~~~a~~~gi 74 (133)
T 2djk_A 23 GIPLAYIFAET-AEERKELSDKLKPIAEAQR----GVINFGTIDAKA-----------------------FGAHAGNLNL 74 (133)
T ss_dssp TSCEEEEECSC-SSSHHHHHHHHHHHHHSST----TTSEEEEECTTT-----------------------TGGGTTTTTC
T ss_pred CCCEEEEEecC-hhhHHHHHHHHHHHHHHhC----CeEEEEEEchHH-----------------------hHHHHHHcCC
Confidence 47899999999 8999999999999999987 457788777774 3568889999
Q ss_pred cc--cceEEEECC-CCcE
Q 016404 282 KG--IPALVLIGP-DGKT 296 (390)
Q Consensus 282 ~~--~P~~~lid~-~G~v 296 (390)
++ +|++++++. +|+.
T Consensus 75 ~~~~iPtl~i~~~~~g~~ 92 (133)
T 2djk_A 75 KTDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp CSSSSSEEEEECTTTCCB
T ss_pred CcccCCEEEEEecCcCcc
Confidence 99 999999964 4655
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-08 Score=91.43 Aligned_cols=166 Identities=13% Similarity=0.136 Sum_probs=100.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
...+++|-|+..-+..+ ...+.++++.+ +. +.+..+ + +..+++.|++
T Consensus 34 ~~~~~vvgff~~~~~~~---~~~f~~~A~~~-~~---~~F~~t--~------------------------~~~v~~~~~v 80 (361)
T 3uem_A 34 SSEVAVIGFFKDVESDS---AKQFLQAAEAI-DD---IPFGIT--S------------------------NSDVFSKYQL 80 (361)
T ss_dssp TSSEEEEEECSCTTSHH---HHHHHHHHHHC-SS---SCEEEE--C------------------------CHHHHHHTTC
T ss_pred cCCcEEEEEEcCCCchH---HHHHHHHHhcC-CC---ceEEEE--C------------------------cHHHHHHhCC
Confidence 35678888886655433 35677777776 22 323322 1 2688899999
Q ss_pred CCCCeEEEEcC--CCccccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCCeee-e
Q 016404 121 DRIPSLIPLAS--DGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT-V 197 (390)
Q Consensus 121 ~~~P~~~~~d~--~G~i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~~~~-l 197 (390)
.. |+++++.+ ++.+.+.. ++....+..... ....|.+. ..+.+++. +
T Consensus 81 ~~-~~i~lfk~f~~~~~~~~g-------------~~~~~~i~~fi~---------------~~~~p~v~-~~~~~~~~~~ 130 (361)
T 3uem_A 81 DK-DGVVLFKKFDEGRNNFEG-------------EVTKENLLDFIK---------------HNQLPLVI-EFTEQTAPKI 130 (361)
T ss_dssp SS-SEEEEEESSTTSEEECCS-------------CCCHHHHHHHHH---------------HHSSCSEE-ECSTTTHHHH
T ss_pred CC-CeEEEEEecCCCccccCC-------------cCCHHHHHHHHH---------------HcCCCcce-ecCcccHHHH
Confidence 88 99999964 33332210 112222221111 11122222 22222111 1
Q ss_pred cccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 198 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 198 ~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
-....++++|+|+++||++|+.+.|.|.+++++|+ +.+.++.|..+... ...+++
T Consensus 131 ~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~----~~i~f~~vd~~~~~---------------------~~~~~~ 185 (361)
T 3uem_A 131 FGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK----GKILFIFIDSDHTD---------------------NQRILE 185 (361)
T ss_dssp HSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGT----TTCEEEEECTTSGG---------------------GHHHHH
T ss_pred hcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHcc----CceEEEEecCChHH---------------------HHHHHH
Confidence 11123578999999999999999999999999997 34666666655322 478899
Q ss_pred Hccccc--cceEEEECCCC
Q 016404 278 IFNIKG--IPALVLIGPDG 294 (390)
Q Consensus 278 ~~~v~~--~P~~~lid~~G 294 (390)
.|||.+ +|++++++.++
T Consensus 186 ~fgi~~~~~P~~~~~~~~~ 204 (361)
T 3uem_A 186 FFGLKKEECPAVRLITLEE 204 (361)
T ss_dssp HTTCCTTTCSEEEEEECC-
T ss_pred HcCCCccCCccEEEEEcCC
Confidence 999987 99999997543
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-09 Score=78.28 Aligned_cols=65 Identities=26% Similarity=0.392 Sum_probs=48.2
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.||++||++|+...+.|.++.+++ ++.+..+.+|.+. ...++++.||+.++|
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~------~~~~~~~~v~~~~--------------------~~~~~~~~~gv~~vP 57 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPS------KYTVEIVHLGTDK--------------------ARIAEAEKAGVKSVP 57 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTT------TEEEEEEETTTCS--------------------STHHHHHHHTCCEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhc------CCeEEEEEecCCh--------------------hhHHHHHHcCCCcCC
Confidence 56799999999999999998876554 3455566665421 035677889999999
Q ss_pred eEEEECCCCcEEee
Q 016404 286 ALVLIGPDGKTIST 299 (390)
Q Consensus 286 ~~~lid~~G~v~~~ 299 (390)
++++ +|+++..
T Consensus 58 t~~i---~g~~~~~ 68 (80)
T 2k8s_A 58 ALVI---DGAAFHI 68 (80)
T ss_dssp EEEE---TTEEEEE
T ss_pred EEEE---CCEEEEe
Confidence 9876 7887654
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7.1e-09 Score=76.28 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=45.0
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.||++||++|+...|.|.++..++ +.-|++|.+ .+++++||++ +|
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~---------~~~vdid~~-----------------------~~l~~~~g~~-vP 49 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA---------FFSVFIDDD-----------------------AALESAYGLR-VP 49 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC---------EEEEECTTC-----------------------HHHHHHHTTT-CS
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh---------eEEEECCCC-----------------------HHHHHHhCCC-cC
Confidence 67899999999999999887663221 455677653 5688899998 99
Q ss_pred eEEEECCCCcEEe
Q 016404 286 ALVLIGPDGKTIS 298 (390)
Q Consensus 286 ~~~lid~~G~v~~ 298 (390)
++++ .+|+.+.
T Consensus 50 tl~~--~~G~~v~ 60 (87)
T 1ttz_A 50 VLRD--PMGRELD 60 (87)
T ss_dssp EEEC--TTCCEEE
T ss_pred eEEE--ECCEEEe
Confidence 9887 6788773
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.5e-09 Score=93.07 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=53.5
Q ss_pred cEEEEEE----ccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 203 KTIGLYF----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 203 k~vlv~F----~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
.++|+.| |++||++|+.+.|.+.++++++.+ .+++.++.|.++. +.+++++
T Consensus 22 ~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~--~~~v~~~~vd~~~-----------------------~~~l~~~ 76 (229)
T 2ywm_A 22 PVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVG--QDKIKLDIYSPFT-----------------------HKEETEK 76 (229)
T ss_dssp CEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHC--TTTEEEEEECTTT-----------------------CHHHHHH
T ss_pred CeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCC--CCceEEEEecCcc-----------------------cHHHHHH
Confidence 4555666 599999999999999999988842 2567887777664 4789999
Q ss_pred ccccccceEEEECCCCc
Q 016404 279 FNIKGIPALVLIGPDGK 295 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~ 295 (390)
|+|+++||+++++ +|+
T Consensus 77 ~~v~~~Ptl~~~~-~~~ 92 (229)
T 2ywm_A 77 YGVDRVPTIVIEG-DKD 92 (229)
T ss_dssp TTCCBSSEEEEES-SSC
T ss_pred cCCCcCcEEEEEC-CCc
Confidence 9999999999995 443
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.2e-08 Score=80.88 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=38.5
Q ss_pred eeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec
Q 016404 194 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246 (390)
Q Consensus 194 ~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~ 246 (390)
...+....++++|+.||++|||+|+.+.|.|.++.+++. ++.|+...+
T Consensus 14 ~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~-----~v~~~~~~~ 61 (175)
T 3gyk_A 14 APVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP-----NVRLVYREW 61 (175)
T ss_dssp SCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TEEEEEEEC
T ss_pred CCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC-----CEEEEEEeC
Confidence 344555667999999999999999999999999988864 366666654
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.1e-09 Score=75.47 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=47.8
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.||++|||+|+.+.+.|+++.+++ + +++..+.+|.+.+ ...++++||+.++|+
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~---~--~~~~~~~v~~~~~--------------------~~~~~~~~gv~~vPt 58 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPS---K--YTVEIVHLGTDKA--------------------RIAEAEKAGVKSVPA 58 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTT---T--EEEEEEETTTCSS--------------------THHHHHHHTCCEEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhc---C--CeEEEEEecCChh--------------------hHHHHHHcCCCcCCE
Confidence 67789999999999999998876543 3 5577777775411 156778899999999
Q ss_pred EEEEcCCCccc
Q 016404 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
+++ +|+++
T Consensus 59 ~~i---~g~~~ 66 (80)
T 2k8s_A 59 LVI---DGAAF 66 (80)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 877 67654
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.9e-08 Score=85.84 Aligned_cols=80 Identities=10% Similarity=0.125 Sum_probs=59.3
Q ss_pred eCCCCeeeecccCCcEEEEEEc--cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC--CHHHHHHhhhcCCccc
Q 016404 189 SRDHRKITVSELAGKTIGLYFG--AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEFDLNHSIMPWLA 264 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~~~~~~~~~~~~ 264 (390)
.++..++.----.+++|||.|| |+||+ +.|.|.++++.|+. ...++.|+.|.+|. +.
T Consensus 20 ~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~-~~~~v~~akVD~d~~g~~-------------- 80 (248)
T 2c0g_A 20 DLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHK-ATKDLLIATVGVKDYGEL-------------- 80 (248)
T ss_dssp ECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHH-HCSSEEEEEEEECSSTTC--------------
T ss_pred ECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhc-cCCCeEEEEEECCccccc--------------
Confidence 4444444321124589999999 99998 99999999999862 12568888888775 10
Q ss_pred ccCCchHHHHHHHHcccc--ccceEEEECCCCc
Q 016404 265 IPYEDRARQDLCRIFNIK--GIPALVLIGPDGK 295 (390)
Q Consensus 265 ~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~ 295 (390)
.+..+++.|+|. ++||++++- |+
T Consensus 81 ------~n~~la~~~~V~~~~~PTl~~F~--G~ 105 (248)
T 2c0g_A 81 ------ENKALGDRYKVDDKNFPSIFLFK--GN 105 (248)
T ss_dssp ------TTHHHHHHTTCCTTSCCEEEEES--SS
T ss_pred ------ccHHHHHHhCCCcCCCCeEEEEe--CC
Confidence 136899999999 999999994 76
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-08 Score=77.30 Aligned_cols=64 Identities=20% Similarity=0.456 Sum_probs=52.4
Q ss_pred EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccc
Q 016404 204 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 283 (390)
Q Consensus 204 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 283 (390)
.+|+.||++||++|+...|.|.++.+++. +.+..|++|.+ .+++++|+++
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~------i~~~~vDId~d-----------------------~~l~~~ygv~- 79 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW------FELEVINIDGN-----------------------EHLTRLYNDR- 79 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC------CCCEEEETTTC-----------------------HHHHHHSTTS-
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC------CeEEEEECCCC-----------------------HHHHHHhCCC-
Confidence 56889999999999999999999988753 56777888754 5678889997
Q ss_pred cceEEEECCCCcEEe
Q 016404 284 IPALVLIGPDGKTIS 298 (390)
Q Consensus 284 ~P~~~lid~~G~v~~ 298 (390)
+|+++++ .+|+++.
T Consensus 80 VP~l~~~-~dG~~v~ 93 (107)
T 2fgx_A 80 VPVLFAV-NEDKELC 93 (107)
T ss_dssp CSEEEET-TTTEEEE
T ss_pred CceEEEE-ECCEEEE
Confidence 9999887 5777763
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.71 E-value=7e-08 Score=80.96 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=39.5
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEec
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~ 85 (390)
..+....++++++.||++|||+|+.+.|.|.++.+++++ +.+++..+
T Consensus 15 ~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----v~~~~~~~ 61 (175)
T 3gyk_A 15 PVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN----VRLVYREW 61 (175)
T ss_dssp CEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEEC
T ss_pred CCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC----EEEEEEeC
Confidence 667777899999999999999999999999999887643 55666654
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-08 Score=79.86 Aligned_cols=68 Identities=21% Similarity=0.373 Sum_probs=46.3
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
++++++ ||++||++|+.+.|.|.++.. .+.++.|..+..... ....+++.|++
T Consensus 19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~--------~~~~v~v~~~~~~~~------------------~~~~l~~~~~v 71 (116)
T 2e7p_A 19 SAPVVV-FSKTYCGYCNRVKQLLTQVGA--------SYKVVELDELSDGSQ------------------LQSALAHWTGR 71 (116)
T ss_dssp SSSEEE-EECTTCHHHHHHHHHHHHHTC--------CCEEEEGGGSTTHHH------------------HHHHHHHHHSC
T ss_pred CCCEEE-EECCCChhHHHHHHHHHHcCC--------CeEEEEccCCCChHH------------------HHHHHHHHhCC
Confidence 355666 999999999999998877632 234444443332111 12568889999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++|++ ++ +|+++..
T Consensus 72 ~~~Pt~-~~--~g~~v~~ 86 (116)
T 2e7p_A 72 GTVPNV-FI--GGKQIGG 86 (116)
T ss_dssp CSSCEE-EE--TTEEEEC
T ss_pred CCcCEE-EE--CCEEECC
Confidence 999999 45 6877754
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=82.02 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=55.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++++||++ |++|+.+.|.|.+++++++++ +.++.|++| +. ..++++||+
T Consensus 22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d--~~---------------------~~~a~~~gi 74 (133)
T 2djk_A 22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAK--AF---------------------GAHAGNLNL 74 (133)
T ss_dssp TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTT--TT---------------------GGGTTTTTC
T ss_pred CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchH--Hh---------------------HHHHHHcCC
Confidence 467899999999 899999999999999999765 556665555 32 468899999
Q ss_pred CC--CCeEEEEcC-CCcc
Q 016404 121 DR--IPSLIPLAS-DGTL 135 (390)
Q Consensus 121 ~~--~P~~~~~d~-~G~i 135 (390)
++ +|++++++. +|+.
T Consensus 75 ~~~~iPtl~i~~~~~g~~ 92 (133)
T 2djk_A 75 KTDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp CSSSSSEEEEECTTTCCB
T ss_pred CcccCCEEEEEecCcCcc
Confidence 99 999999974 3554
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-08 Score=76.62 Aligned_cols=63 Identities=17% Similarity=0.345 Sum_probs=51.3
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCC
Q 016404 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRI 123 (390)
Q Consensus 44 ~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 123 (390)
.+++.||++||++|+...|.|.++.+++. +++..|++|.+ .+++.+|+++ +
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-----i~~~~vDId~d-----------------------~~l~~~ygv~-V 80 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-----FELEVINIDGN-----------------------EHLTRLYNDR-V 80 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC-----CCCEEEETTTC-----------------------HHHHHHSTTS-C
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC-----CeEEEEECCCC-----------------------HHHHHHhCCC-C
Confidence 56899999999999999999999988753 55777777754 3677889997 9
Q ss_pred CeEEEEcCCCccc
Q 016404 124 PSLIPLASDGTLI 136 (390)
Q Consensus 124 P~~~~~d~~G~i~ 136 (390)
|+++++. +|+.+
T Consensus 81 P~l~~~~-dG~~v 92 (107)
T 2fgx_A 81 PVLFAVN-EDKEL 92 (107)
T ss_dssp SEEEETT-TTEEE
T ss_pred ceEEEEE-CCEEE
Confidence 9998884 77765
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.68 E-value=7.2e-08 Score=83.96 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=58.6
Q ss_pred eecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC---CH----------------HHHHHh
Q 016404 196 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH----------------KEFDLN 256 (390)
Q Consensus 196 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~ 256 (390)
.+....++++|+.||++|||+|+++.|.|.++.+ .++.|+.+.... .. ..+.++
T Consensus 80 ~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~-------~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~ 152 (216)
T 1eej_A 80 VYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA-------LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDV 152 (216)
T ss_dssp EECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH-------TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred eecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh-------CCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHH
Confidence 3344457999999999999999999999988753 246777665431 11 123333
Q ss_pred hhcCCcc--cccCCchHHHHHHHHccccccceEEEECCCCc
Q 016404 257 HSIMPWL--AIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295 (390)
Q Consensus 257 ~~~~~~~--~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 295 (390)
+...+.. ......+.+..+++.|||.++|++++. +|+
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~ 191 (216)
T 1eej_A 153 MAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGT 191 (216)
T ss_dssp HTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSC
T ss_pred HhCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCe
Confidence 3222210 122234556789999999999998553 454
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-08 Score=84.98 Aligned_cols=92 Identities=18% Similarity=0.352 Sum_probs=62.0
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---Ch----------------hHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DE----------------NGFEEH 95 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~ 95 (390)
+.+....+|++++.||++|||+|+++.|.|.++.+. + ++++++.+.. .. ..|.++
T Consensus 79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----~--v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~ 152 (216)
T 1eej_A 79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----G--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDV 152 (216)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC----C--cEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHH
Confidence 555666789999999999999999999999887642 3 7787776532 11 123333
Q ss_pred HHhCCC--cceecChhHHHHHHHhcCcCCCCeEEEEcCCCc
Q 016404 96 FKCMPW--LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 96 ~~~~~~--~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~ 134 (390)
+..... ..+....+.+..++++||++++|++++. +|+
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~ 191 (216)
T 1eej_A 153 MAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGT 191 (216)
T ss_dssp HTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSC
T ss_pred HhCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCe
Confidence 332221 0122345567889999999999999553 453
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=83.70 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=54.6
Q ss_pred CCcEEEEEEcc--CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC---CHHHHHHhhhcCCcccccCCchHHHHH
Q 016404 201 AGKTIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEFDLNHSIMPWLAIPYEDRARQDL 275 (390)
Q Consensus 201 ~gk~vlv~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~l 275 (390)
.+++|||.||| +||+ +.|.|.++++.++. ..++.|+.|.+|. +. +..+
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~--~~~v~~akVDvd~~g~~~---------------------~~~l 73 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSAS--SDDLLVAEVGISDYGDKL---------------------NMEL 73 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTT--CTTEEEEEECCCCSSSCC---------------------SHHH
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcC--CCCeEEEEEeCCcccchh---------------------hHHH
Confidence 35799999999 9998 89999999999963 2467787777653 21 4789
Q ss_pred HHHcccc--ccceEEEECCCCc
Q 016404 276 CRIFNIK--GIPALVLIGPDGK 295 (390)
Q Consensus 276 ~~~~~v~--~~P~~~lid~~G~ 295 (390)
++.|+|. ++||++++ ++|+
T Consensus 74 ~~~~~V~~~~~PTl~~f-~~G~ 94 (240)
T 2qc7_A 74 SEKYKLDKESYPVFYLF-RDGD 94 (240)
T ss_dssp HHHTTCCGGGCSEEEEE-ETTC
T ss_pred HHHcCCCCCCCCEEEEE-eCCC
Confidence 9999999 99999999 5665
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7.8e-07 Score=77.94 Aligned_cols=172 Identities=8% Similarity=0.023 Sum_probs=102.6
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
..++++|-|+++| |....+.+.++++.+. . +.+..+ .+ ..++++|++
T Consensus 26 ~~~v~vVgff~~~---~~~~~~~f~~~A~~l~-~---~~F~~t-~~-------------------------~~v~~~~~v 72 (227)
T 4f9z_D 26 ATEVAVIGFFQDL---EIPAVPILHSMVQKFP-G---VSFGIS-TD-------------------------SEVLTHYNI 72 (227)
T ss_dssp TSSEEEEEECSCS---CSTHHHHHHHHTTTCT-T---SEEEEE-CC-------------------------HHHHHHTTC
T ss_pred cCCeEEEEEecCC---CchhHHHHHHHHHhCC-C---ceEEEE-CC-------------------------HHHHHHcCC
Confidence 4689999999998 5678888999988884 2 333332 12 578899999
Q ss_pred CCCCeEEEEcCCCc-cccccccccccccCCCCCCCChhhHHHHhhcchhhhcccchhHHhhccCCceEEeCCCCeeeecc
Q 016404 121 DRIPSLIPLASDGT-LIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSE 199 (390)
Q Consensus 121 ~~~P~~~~~d~~G~-i~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~p~f~l~~~g~~~~l~~ 199 (390)
.+ |+++++.+... ....++. . .+ +.....+..... ....|-+. ..+.++...--
T Consensus 73 ~~-p~i~lfk~~~~~~~~~~~~-~---~g----~~~~~~l~~fi~---------------~~~~plv~-e~t~~n~~~~~ 127 (227)
T 4f9z_D 73 TG-NTICLFRLVDNEQLNLEDE-D---IE----SIDATKLSRFIE---------------INSLHMVT-EYNPVTVIGLF 127 (227)
T ss_dssp CS-SEEEEEETTTTEEEEECHH-H---HH----TCCHHHHHHHHH---------------HHCCCSEE-ECCHHHHHHHH
T ss_pred CC-CeEEEEEecCccccccccc-c---cC----CCCHHHHHHHHH---------------HhCCCcee-ecCcccHHHHh
Confidence 98 99999974221 1100000 0 00 011111111111 01112221 22222111000
Q ss_pred cCC-cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 200 LAG-KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 200 ~~g-k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
-.+ +.+++.|..+||+.|....+.+.+++++|+ .++.++.+..+... ...+.+.
T Consensus 128 ~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k----~~i~F~~vd~~~~~---------------------~~~~l~~ 182 (227)
T 4f9z_D 128 NSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQ----GKILFILVDSGMKE---------------------NGKVISF 182 (227)
T ss_dssp HSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTT----TTCEEEEEETTSGG---------------------GHHHHHH
T ss_pred ccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhh----CCEEEEEeCCccHh---------------------HHHHHHH
Confidence 122 455667778899999999999999999998 45777777665321 3557788
Q ss_pred cccc--ccceEEEECCCCc
Q 016404 279 FNIK--GIPALVLIGPDGK 295 (390)
Q Consensus 279 ~~v~--~~P~~~lid~~G~ 295 (390)
||+. .+|++.+++..+.
T Consensus 183 fgl~~~~~P~~~i~~~~~~ 201 (227)
T 4f9z_D 183 FKLKESQLPALAIYQTLDD 201 (227)
T ss_dssp TTCCGGGCSEEEEEESSSC
T ss_pred cCCCcccCCEEEEEECCCC
Confidence 9997 7999999985544
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5.7e-08 Score=85.94 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=58.3
Q ss_pred eecCCCc-cccCccCCCEEEEEEe--cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC--ChhHHHHHHHhCCCc
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFS--ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH--DENGFEEHFKCMPWL 102 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~--a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~--~~~~~~~~~~~~~~~ 102 (390)
+..++.. +.-.--.+++|||+|| ||||+ +.|.|.++++.++....++.+.-|++|. +.+
T Consensus 18 v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~------------ 81 (248)
T 2c0g_A 18 CVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELE------------ 81 (248)
T ss_dssp CEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCT------------
T ss_pred cEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccc------------
Confidence 4444555 4322235789999999 99998 9999999999997511226666666553 111
Q ss_pred ceecChhHHHHHHHhcCcC--CCCeEEEEcCCCc
Q 016404 103 AVPFDETLHKKLRIRYRVD--RIPSLIPLASDGT 134 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~--~~P~~~~~d~~G~ 134 (390)
+..++++|+|. ++||+++|. |+
T Consensus 82 --------n~~la~~~~V~~~~~PTl~~F~--G~ 105 (248)
T 2c0g_A 82 --------NKALGDRYKVDDKNFPSIFLFK--GN 105 (248)
T ss_dssp --------THHHHHHTTCCTTSCCEEEEES--SS
T ss_pred --------cHHHHHHhCCCcCCCCeEEEEe--CC
Confidence 26899999999 999999995 76
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-08 Score=77.58 Aligned_cols=67 Identities=19% Similarity=0.379 Sum_probs=45.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
+++++++ ||++||++|+.+.|.|.++... +..+.+|.+.+. ......+++.|++
T Consensus 18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~---------~~~v~v~~~~~~----------------~~~~~~l~~~~~v 71 (116)
T 2e7p_A 18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGAS---------YKVVELDELSDG----------------SQLQSALAHWTGR 71 (116)
T ss_dssp TSSSEEE-EECTTCHHHHHHHHHHHHHTCC---------CEEEEGGGSTTH----------------HHHHHHHHHHHSC
T ss_pred cCCCEEE-EECCCChhHHHHHHHHHHcCCC---------eEEEEccCCCCh----------------HHHHHHHHHHhCC
Confidence 4566666 9999999999999988876321 344555533210 0112568899999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++|++ ++ +|+.+
T Consensus 72 ~~~Pt~-~~--~g~~v 84 (116)
T 2e7p_A 72 GTVPNV-FI--GGKQI 84 (116)
T ss_dssp CSSCEE-EE--TTEEE
T ss_pred CCcCEE-EE--CCEEE
Confidence 999999 44 57665
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.8e-08 Score=82.02 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=36.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d 247 (390)
.++++|+.||+.|||+|+.+.|.|.++.+++. .++.+..+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~p~~ 66 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLP----ADVHFVRLPAL 66 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCC----TTEEEEEEECC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCC----CCeEEEEEehh
Confidence 57999999999999999999999999988876 46777766653
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-07 Score=79.70 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=38.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d 247 (390)
.++++|+.||++|||+|+.+.|.+.++.++++ .++.++.+.++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAP----QDVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCC----TTEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCC----CCeEEEEEecc
Confidence 47999999999999999999999999998886 46788888875
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-07 Score=79.63 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=38.3
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
.++++++.||++|||+|+.+.|.+.++.+++.++ +.++.+.++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQD---VVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCC---eEEEEEecc
Confidence 5899999999999999999999999999888763 788888876
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-08 Score=72.49 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=43.4
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.||++||++|+...|.|.++..++ +.-|++|.+ .+++++|+++ +|+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~-----------------------~~l~~~~g~~-vPt 50 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDD-----------------------AALESAYGLR-VPV 50 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTC-----------------------HHHHHHHTTT-CSE
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCC-----------------------HHHHHHhCCC-cCe
Confidence 78899999999999999887654321 445666643 4688889998 999
Q ss_pred EEEEcCCCccc
Q 016404 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
+++ .+|+.+
T Consensus 51 l~~--~~G~~v 59 (87)
T 1ttz_A 51 LRD--PMGREL 59 (87)
T ss_dssp EEC--TTCCEE
T ss_pred EEE--ECCEEE
Confidence 988 478765
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-07 Score=82.59 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=53.9
Q ss_pred CCCEEEEEEec--CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC---CChhHHHHHHHhCCCcceecChhHHHHHH
Q 016404 41 GGKTICLFFSA--NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD---HDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 41 ~gk~vll~F~a--~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
.+++|||+||+ |||+ +.|.|.++++.++.. .++.+..|++| ++.+ ..++
T Consensus 21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~-~~v~~akVDvd~~g~~~~---------------------~~l~ 74 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS-DDLLVAEVGISDYGDKLN---------------------MELS 74 (240)
T ss_dssp GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC-TTEEEEEECCCCSSSCCS---------------------HHHH
T ss_pred CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC-CCeEEEEEeCCcccchhh---------------------HHHH
Confidence 46899999999 9999 899999999999752 23666666654 2333 7899
Q ss_pred HhcCcC--CCCeEEEEcCCCc
Q 016404 116 IRYRVD--RIPSLIPLASDGT 134 (390)
Q Consensus 116 ~~~~v~--~~P~~~~~d~~G~ 134 (390)
++|+|. ++||+++|. +|+
T Consensus 75 ~~~~V~~~~~PTl~~f~-~G~ 94 (240)
T 2qc7_A 75 EKYKLDKESYPVFYLFR-DGD 94 (240)
T ss_dssp HHTTCCGGGCSEEEEEE-TTC
T ss_pred HHcCCCCCCCCEEEEEe-CCC
Confidence 999999 999999995 676
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=68.64 Aligned_cols=66 Identities=21% Similarity=0.385 Sum_probs=49.3
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc--ccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG 283 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~ 283 (390)
++.|+++||++|+...+.|.++..+++ ++.+..++++.+.. ...++.+.+| +.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-----~i~~~~vdi~~~~~-------------------~~~~l~~~~~~~~~~ 58 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----DFQYQYVDIRAEGI-------------------TKEDLQQKAGKPVET 58 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS-----SCEEEEECHHHHTC-------------------CSHHHHHHTCCCSCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCC-----CceEEEEecccChH-------------------HHHHHHHHhCCCCce
Confidence 677999999999999999999988764 46777777653210 0146888898 999
Q ss_pred cceEEEECCCCcEEe
Q 016404 284 IPALVLIGPDGKTIS 298 (390)
Q Consensus 284 ~P~~~lid~~G~v~~ 298 (390)
+|+++ + +|+.+.
T Consensus 59 vP~i~-~--~g~~i~ 70 (85)
T 1ego_A 59 VPQIF-V--DQQHIG 70 (85)
T ss_dssp SCEEE-E--TTEEEE
T ss_pred eCeEE-E--CCEEEE
Confidence 99984 4 576653
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=72.02 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=47.1
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
..++|+.||++||++|+...+.|.++. .++.+..|.+|... +.+++++||
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~--------~~i~~~~vdi~~~~---------------------~~el~~~~g- 64 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYK--------DRFILQEVDITLPE---------------------NSTWYERYK- 64 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTS--------SSSEEEEEETTSST---------------------THHHHHHSS-
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhh--------hCCeEEEEECCCcc---------------------hHHHHHHHC-
Confidence 357888999999999999998886542 23678888887321 367888999
Q ss_pred cccceEEEECCCCcEE
Q 016404 282 KGIPALVLIGPDGKTI 297 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~ 297 (390)
.++|+++ + +|+.+
T Consensus 65 ~~vP~l~-~--~g~~~ 77 (100)
T 1wjk_A 65 FDIPVFH-L--NGQFL 77 (100)
T ss_dssp SSCSEEE-E--SSSEE
T ss_pred CCCCEEE-E--CCEEE
Confidence 9999764 4 56654
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-07 Score=80.32 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=59.8
Q ss_pred eecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC---CCH-------------HHHHHhhh-
Q 016404 196 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD---RDH-------------KEFDLNHS- 258 (390)
Q Consensus 196 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d---~~~-------------~~~~~~~~- 258 (390)
.+..-.++++|+.|+.+|||+|+++.+.+.++.+. .++.|+.+.+. ... ..+-....
T Consensus 91 ~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~------g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~ 164 (241)
T 1v58_A 91 LDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS------GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 164 (241)
T ss_dssp EESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT------TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred eECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC------CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence 33344568999999999999999999998876543 45777766652 111 11111111
Q ss_pred cCC---ccc-------ccCCchHHHHHHHHccccccceEEEECCCCcE
Q 016404 259 IMP---WLA-------IPYEDRARQDLCRIFNIKGIPALVLIGPDGKT 296 (390)
Q Consensus 259 ~~~---~~~-------~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v 296 (390)
.+. ... .....+.+..+++.+||.++|++++.|.+|++
T Consensus 165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~ 212 (241)
T 1v58_A 165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL 212 (241)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 110 000 00012245678899999999999999888875
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.1e-08 Score=88.59 Aligned_cols=64 Identities=20% Similarity=0.539 Sum_probs=45.0
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
+..+++|||+||++|+++.|.++++.++++ .|.+|.... .+.+.+++++|+|+
T Consensus 198 ~~~vV~F~A~WC~~Ck~l~p~le~lA~~l~----------~Vd~d~~d~-----------------~~~~~~la~~~gI~ 250 (291)
T 3kp9_A 198 QIGGTMYGAYWCPHCQDQKELFGAAFDQVP----------YVECSPNGP-----------------GTPQAQECTEAGIT 250 (291)
T ss_dssp HTTCEEEECTTCHHHHHHHHHHGGGGGGSC----------EEESCSSCS-----------------SSCCCHHHHTTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHcC----------EEEEeecCc-----------------hhhHHHHHHHcCCc
Confidence 345789999999999999999988865442 334442100 00146889999999
Q ss_pred ccceEEEECCCCcE
Q 016404 283 GIPALVLIGPDGKT 296 (390)
Q Consensus 283 ~~P~~~lid~~G~v 296 (390)
++||+++ +|+.
T Consensus 251 ~vPT~~i---~G~~ 261 (291)
T 3kp9_A 251 SYPTWII---NGRT 261 (291)
T ss_dssp STTEEEE---TTEE
T ss_pred ccCeEEE---CCEE
Confidence 9999555 6653
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-07 Score=68.37 Aligned_cols=65 Identities=14% Similarity=0.306 Sum_probs=48.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC--cCCC
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR--VDRI 123 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~ 123 (390)
++.|+++|||+|+...+.|.++.+++++ +++..++++.+.. ...++.+.++ +.++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~----i~~~~vdi~~~~~-------------------~~~~l~~~~~~~~~~v 59 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERDD----FQYQYVDIRAEGI-------------------TKEDLQQKAGKPVETV 59 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSS----CEEEEECHHHHTC-------------------CSHHHHHHTCCCSCCS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCC----ceEEEEecccChH-------------------HHHHHHHHhCCCCcee
Confidence 6779999999999999999998887642 6677777653221 0146888898 9999
Q ss_pred CeEEEEcCCCccc
Q 016404 124 PSLIPLASDGTLI 136 (390)
Q Consensus 124 P~~~~~d~~G~i~ 136 (390)
|+++ + +|+.+
T Consensus 60 P~i~-~--~g~~i 69 (85)
T 1ego_A 60 PQIF-V--DQQHI 69 (85)
T ss_dssp CEEE-E--TTEEE
T ss_pred CeEE-E--CCEEE
Confidence 9984 4 56554
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6.2e-07 Score=76.51 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=37.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d 247 (390)
.++++|+.||.+|||+|..+.|.|.++.++++ .++.+..+.+.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~p~~ 63 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALP----SDAYLRTEHVV 63 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSC----TTEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCC----CceEEEEeccc
Confidence 46899999999999999999999999998885 46777777753
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.43 E-value=8.8e-07 Score=75.40 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=37.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
.++++++.||++|||+|+.+.|.|.++.+++.++ +.++.+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~ 66 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPAD---VHFVRLPAL 66 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCC---eEEEEEehh
Confidence 5899999999999999999999999998887663 777766664
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=9.7e-07 Score=76.42 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=54.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC---CH----------------HHHHHhhhcCC
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH----------------KEFDLNHSIMP 261 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~~~~~~ 261 (390)
.++++|+.||++|||+|+++.|.|.++.+ .++.|+.+.... .. ..+...+....
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~-------~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~ 157 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYND-------LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL 157 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHH-------TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHh-------CCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCC
Confidence 46899999999999999999999888532 246666654431 11 11222222111
Q ss_pred cc--cccCCchHHHHHHHHccccccceEEEECCCCc
Q 016404 262 WL--AIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295 (390)
Q Consensus 262 ~~--~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 295 (390)
.. ......+.+..+++.+||+++|++++ .+|+
T Consensus 158 ~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~ 191 (211)
T 1t3b_A 158 PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE 191 (211)
T ss_dssp CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence 00 01112235678899999999999887 4675
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=76.88 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=62.5
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---C-------------hhHHHHHHHh
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---D-------------ENGFEEHFKC 98 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~-------------~~~~~~~~~~ 98 (390)
+.+....+|.+++.|+.+|||+|+++.+.+.++.+. . ++.++++.+.. + ...+..+...
T Consensus 90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~---g--~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~ 164 (241)
T 1v58_A 90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS---G--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 164 (241)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT---T--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC---C--cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555789999999999999999999998886653 1 27777776631 1 1111111111
Q ss_pred -CC---Cc-------ceecChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016404 99 -MP---WL-------AVPFDETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 99 -~~---~~-------~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
+. .. .+....+.+..+++++|++++|++++.+.+|++
T Consensus 165 ~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~ 212 (241)
T 1v58_A 165 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL 212 (241)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred HhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 00 00 011123355778899999999999999877854
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=7.7e-07 Score=77.05 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=56.2
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---Chh----------------HHHHHHHhCC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DEN----------------GFEEHFKCMP 100 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~~~----------------~~~~~~~~~~ 100 (390)
-.++++++.||++|||+|+++.|.+.++.+ .+ ++++++.+.. ... .|..++....
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~--v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~ 157 (211)
T 1t3b_A 84 KNEKHVVTVFMDITCHYCHLLHQQLKEYND----LG--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL 157 (211)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC
T ss_pred CCCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC--cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCC
Confidence 357899999999999999999999888543 23 6777665531 111 1222211111
Q ss_pred C--cceecChhHHHHHHHhcCcCCCCeEEEEcCCCc
Q 016404 101 W--LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 101 ~--~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~ 134 (390)
. .......+.+..+++++|++++|++++ .+|+
T Consensus 158 ~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~ 191 (211)
T 1t3b_A 158 PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE 191 (211)
T ss_dssp CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence 0 011123346678999999999999988 3665
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-07 Score=70.16 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=46.6
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
.+++++.|+++||++|+...+.|.++.+ + +.+..|++|.+++ .+++++|+ .
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~-----~--i~~~~vdi~~~~~---------------------~el~~~~g-~ 65 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD-----R--FILQEVDITLPEN---------------------STWYERYK-F 65 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS-----S--SEEEEEETTSSTT---------------------HHHHHHSS-S
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh-----C--CeEEEEECCCcch---------------------HHHHHHHC-C
Confidence 5678899999999999999998876532 2 6688888873232 67889999 9
Q ss_pred CCCeEEEEcCCCcc
Q 016404 122 RIPSLIPLASDGTL 135 (390)
Q Consensus 122 ~~P~~~~~d~~G~i 135 (390)
++|+++ + +|+.
T Consensus 66 ~vP~l~-~--~g~~ 76 (100)
T 1wjk_A 66 DIPVFH-L--NGQF 76 (100)
T ss_dssp SCSEEE-E--SSSE
T ss_pred CCCEEE-E--CCEE
Confidence 999764 4 4554
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=74.03 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=37.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
.++++++.||.+|||+|..+.|.|.++.++++.+ +.+..+.+.
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~~ 63 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSD---AYLRTEHVV 63 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTT---EEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCc---eEEEEeccc
Confidence 5899999999999999999999999999887653 778777764
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.8e-06 Score=69.60 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=44.8
Q ss_pred eecCCCccccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016404 28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 28 l~~~~g~~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
+.+..+.+.+....++++++.|+..+||+|..+.+.+.++.+++.+.+ ++++++..+.
T Consensus 13 ~~~~~~~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 70 (175)
T 1z6m_A 13 KVNTETGLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLFD 70 (175)
T ss_dssp GCCSSSSEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEECC
T ss_pred ccCCCCCcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeCC
Confidence 334444466677788999999999999999999999999998883221 3788887764
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.6e-07 Score=76.98 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=37.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCC
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDR 248 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~ 248 (390)
.++++||.||+.|||+|+.+.|.| .++.++++ .++.+..+.++-
T Consensus 112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~----~~v~~~~~~v~~ 158 (197)
T 1un2_A 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP----EGVKMTKYHVNF 158 (197)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC----TTCCEEEEECSS
T ss_pred CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCC----CCCEEEEeccCc
Confidence 468999999999999999999998 88888876 567788888764
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-07 Score=85.27 Aligned_cols=71 Identities=15% Similarity=0.304 Sum_probs=49.9
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
+.+.+.-++..+++|||+|||||+++.|.++++++++ . .|.+|.+.. .+.+.++
T Consensus 190 ~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l-------~--~Vd~d~~d~-----------------~~~~~~l 243 (291)
T 3kp9_A 190 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV-------P--YVECSPNGP-----------------GTPQAQE 243 (291)
T ss_dssp HHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS-------C--EEESCSSCS-----------------SSCCCHH
T ss_pred HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc-------C--EEEEeecCc-----------------hhhHHHH
Confidence 6666655555679999999999999999999987543 1 344441100 0012689
Q ss_pred HHhcCcCCCCeEEEEcCCCc
Q 016404 115 RIRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~ 134 (390)
+++|+++++||+++ +|+
T Consensus 244 a~~~gI~~vPT~~i---~G~ 260 (291)
T 3kp9_A 244 CTEAGITSYPTWII---NGR 260 (291)
T ss_dssp HHTTTCCSTTEEEE---TTE
T ss_pred HHHcCCcccCeEEE---CCE
Confidence 99999999999655 565
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=86.78 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=55.1
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
..++..++.||++||++|+.+.|.++++...+. + +.+..|++|.. .+++++|+
T Consensus 115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~--v~~~~vd~~~~-----------------------~~~~~~~~ 167 (521)
T 1hyu_A 115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--R--IKHTAIDGGTF-----------------------QNEITERN 167 (521)
T ss_dssp CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--T--EEEEEEETTTC-----------------------HHHHHHTT
T ss_pred cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--c--eEEEEEechhh-----------------------HHHHHHhC
Confidence 457888999999999999999999999988764 2 66666665522 68999999
Q ss_pred cCCCCeEEEEcCCCcccc
Q 016404 120 VDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~ 137 (390)
+.++|++++ +|+.+.
T Consensus 168 i~svPt~~i---~g~~~~ 182 (521)
T 1hyu_A 168 VMGVPAVFV---NGKEFG 182 (521)
T ss_dssp CCSSSEEEE---TTEEEE
T ss_pred CCccCEEEE---CCEEEe
Confidence 999999977 666553
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=67.28 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=41.1
Q ss_pred eeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC
Q 016404 195 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247 (390)
Q Consensus 195 ~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d 247 (390)
+.+....++++|+.|+..|||+|+.+.+.+.++.++|.+ ..+++++...+.
T Consensus 20 ~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~~~v~~~~~~~~ 70 (175)
T 1z6m_A 20 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVK--SGKVERIIKLFD 70 (175)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH--TTSEEEEEEECC
T ss_pred cccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhh--CCcEEEEEEeCC
Confidence 445555678999999999999999999999999888832 156888887764
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.2e-06 Score=70.01 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=36.1
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~ 246 (390)
.++++|+.||..|||+|....+.+.++.+++. .++.+..+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQA----KDVRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSC----TTEEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcC----CceEEEEeCc
Confidence 56889999999999999999999999988875 4677777765
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.8e-06 Score=69.39 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=36.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEec
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~ 85 (390)
.++++++.||.++||+|..+.+.+.++.+++..+ +.++.+.+
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~ 65 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKD---VRFTLVPA 65 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---EEEEEEEC
T ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCc---eEEEEeCc
Confidence 6888999999999999999999999988877543 77777776
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=98.11 E-value=8.2e-06 Score=69.45 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=36.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d 247 (390)
.++++|+.||+.|||+|+.+.|.+.++.+++. .++.+..+.++
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~----~~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFK----DDMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCC----TTEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCC----CCeEEEEecCC
Confidence 36899999999999999999999999988876 46777777765
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=68.24 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=37.1
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
.++++++.|++.|||+|+.+.|.+.++.+++.++ +.+..+.++
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~---v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD---MYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT---EEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC---eEEEEecCC
Confidence 4799999999999999999999999998887763 777777765
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-05 Score=57.39 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=38.2
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++||++|+...+.|.+. + +++..+++|.+.+. ....+++++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~-------~--i~~~~vdi~~~~~~--------------------~~~~~~~g~~~vP~ 53 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR-------G--FDFEMINVDRVPEA--------------------AEALRAQGFRQLPV 53 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHHH--------------------HHHHHHTTCCSSCE
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------C--CCeEEEECCCCHHH--------------------HHHHHHhCCCccCE
Confidence 5779999999999988877652 3 55777888765431 22233589999999
Q ss_pred EE
Q 016404 126 LI 127 (390)
Q Consensus 126 ~~ 127 (390)
++
T Consensus 54 ~~ 55 (81)
T 1h75_A 54 VI 55 (81)
T ss_dssp EE
T ss_pred EE
Confidence 84
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.5e-05 Score=61.72 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=54.8
Q ss_pred ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC-----CCH--------------HHHHHhhhc
Q 016404 199 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDH--------------KEFDLNHSI 259 (390)
Q Consensus 199 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~--------------~~~~~~~~~ 259 (390)
.-.++++|+.|+.++||+|+++.+.+.++ .++.|+.+..- .+. ..|...+..
T Consensus 11 ~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l---------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~ 81 (147)
T 3gv1_A 11 RGNGKLKVAVFSDPDCPFCKRLEHEFEKM---------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRK 81 (147)
T ss_dssp ETTCCEEEEEEECTTCHHHHHHHHHHTTC---------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred cCCCCEEEEEEECCCChhHHHHHHHHhhc---------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 33568999999999999999999887543 34666655432 111 123222221
Q ss_pred --CCc--ccccCCchHHHHHHHHccccccceEEEECCCCcE
Q 016404 260 --MPW--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT 296 (390)
Q Consensus 260 --~~~--~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v 296 (390)
.+- ....-..+.+..+++.+||+++||+++ .+|++
T Consensus 82 g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~ 120 (147)
T 3gv1_A 82 GKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRT 120 (147)
T ss_dssp CCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCE
T ss_pred CCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEE
Confidence 110 011112345778999999999999987 57764
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=5.9e-06 Score=62.71 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=42.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++|||+|++..+.|.++...+. + +..+++|.+.+ .......+.+.+++.++|+
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~~----~--~~~vdi~~~~~----------------~~~~~~~l~~~~g~~~vP~ 71 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKEG----L--LEFVDITATSD----------------TNEIQDYLQQLTGARTVPR 71 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCTT----S--EEEEEGGGSTT----------------HHHHHHHHHHHHSCCCSCE
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCCC----c--cEEEEccCCCC----------------HHHHHHHHHHHhCCCCcCe
Confidence 566999999999999888876433221 1 55566664421 0011246778899999999
Q ss_pred EEEEcCCCccc
Q 016404 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
++ + +|+.+
T Consensus 72 i~-~--~g~~i 79 (105)
T 1kte_A 72 VF-I--GKECI 79 (105)
T ss_dssp EE-E--TTEEE
T ss_pred EE-E--CCEEE
Confidence 74 4 56554
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.1e-05 Score=56.42 Aligned_cols=58 Identities=12% Similarity=0.284 Sum_probs=39.6
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.||++||++|+...+.|.++ ++.+..++++.+.+ ..+..+.+|+.++|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~----------~i~~~~vdi~~~~~--------------------~~~~~~~~g~~~vP 52 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR----------GFDFEMINVDRVPE--------------------AAEALRAQGFRQLP 52 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT----------TCCCEEEETTTCHH--------------------HHHHHHHTTCCSSC
T ss_pred EEEEcCCCChhHHHHHHHHHHC----------CCCeEEEECCCCHH--------------------HHHHHHHhCCCccC
Confidence 5679999999999988887652 24566777776431 12223358999999
Q ss_pred eEEEECCCCcE
Q 016404 286 ALVLIGPDGKT 296 (390)
Q Consensus 286 ~~~lid~~G~v 296 (390)
+++ + +|+.
T Consensus 53 ~~~-~--~g~~ 60 (81)
T 1h75_A 53 VVI-A--GDLS 60 (81)
T ss_dssp EEE-E--TTEE
T ss_pred EEE-E--CCEE
Confidence 984 4 4554
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=8.8e-06 Score=61.73 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=42.8
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|+++||++|+...+.|.++...+ .+ +..+.++.+... ......+.+.+|+.++|
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~-----~~--~~~vdi~~~~~~----------------~~~~~~l~~~~g~~~vP 70 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKE-----GL--LEFVDITATSDT----------------NEIQDYLQQLTGARTVP 70 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCT-----TS--EEEEEGGGSTTH----------------HHHHHHHHHHHSCCCSC
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCC-----Cc--cEEEEccCCCCH----------------HHHHHHHHHHhCCCCcC
Confidence 56699999999999998887653332 12 444555543100 00124677889999999
Q ss_pred eEEEECCCCcEEe
Q 016404 286 ALVLIGPDGKTIS 298 (390)
Q Consensus 286 ~~~lid~~G~v~~ 298 (390)
+++ + +|+.+.
T Consensus 71 ~i~-~--~g~~i~ 80 (105)
T 1kte_A 71 RVF-I--GKECIG 80 (105)
T ss_dssp EEE-E--TTEEEE
T ss_pred eEE-E--CCEEEe
Confidence 974 4 576654
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=2.9e-05 Score=54.61 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=38.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++||++|++..+.|+++ + +++..++++.+.+. ....+.+++.++|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-------~--i~~~~~di~~~~~~--------------------~~~~~~~~~~~vP~ 53 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-------G--LAYNTVDISLDDEA--------------------RDYVMALGYVQAPV 53 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHHH--------------------HHHHHHTTCBCCCE
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------C--CCcEEEECCCCHHH--------------------HHHHHHcCCCccCE
Confidence 5678999999999988877753 3 55777777755420 12224689999999
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 54 l~~ 56 (75)
T 1r7h_A 54 VEV 56 (75)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.84 E-value=1.2e-05 Score=62.09 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=43.6
Q ss_pred EEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEE---EEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELE---VIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 44 ~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~---vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
..++.|+++|||+|++..+.|.++ + ++ +..+++|.+.+ .......+.+.+|+
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~-------~--~~~~~~~~vdi~~~~~----------------~~~~~~~l~~~~g~ 73 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKF-------S--FKRGAYEIVDIKEFKP----------------ENELRDYFEQITGG 73 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTS-------C--BCTTSEEEEEGGGSSS----------------HHHHHHHHHHHHSC
T ss_pred CCEEEEEeCCChhHHHHHHHHHHc-------C--CCcCceEEEEccCCCC----------------hHHHHHHHHHHhCC
Confidence 346779999999999888876543 2 33 66677764421 01122578888999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++|++++ +|+.+
T Consensus 74 ~~vP~v~i---~g~~i 86 (114)
T 2hze_A 74 KTVPRIFF---GKTSI 86 (114)
T ss_dssp CSSCEEEE---TTEEE
T ss_pred CCcCEEEE---CCEEE
Confidence 99998754 56654
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.9e-05 Score=61.47 Aligned_cols=61 Identities=20% Similarity=0.379 Sum_probs=41.6
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeEE
Q 016404 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLI 127 (390)
Q Consensus 48 ~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 127 (390)
.|+++||++|++..+.|.++ + +.+..+++|.+.+. ......+.+.+++.++|+++
T Consensus 31 vf~~~~Cp~C~~~~~~L~~~-------~--i~~~~vdid~~~~~----------------~~~~~~l~~~~g~~~vP~l~ 85 (130)
T 2cq9_A 31 IFSKTSCSYCTMAKKLFHDM-------N--VNYKVVELDLLEYG----------------NQFQDALYKMTGERTVPRIF 85 (130)
T ss_dssp EEECSSCSHHHHHHHHHHHH-------T--CCCEEEETTTSTTH----------------HHHHHHHHHHHSSCCSSEEE
T ss_pred EEEcCCChHHHHHHHHHHHc-------C--CCcEEEECcCCcCc----------------HHHHHHHHHHhCCCCcCEEE
Confidence 39999999999999888764 2 33556677654210 01124688889999999985
Q ss_pred EEcCCCccc
Q 016404 128 PLASDGTLI 136 (390)
Q Consensus 128 ~~d~~G~i~ 136 (390)
+ +|+.+
T Consensus 86 -i--~G~~i 91 (130)
T 2cq9_A 86 -V--NGTFI 91 (130)
T ss_dssp -E--TTEEE
T ss_pred -E--CCEEE
Confidence 3 56655
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=97.79 E-value=1.7e-05 Score=61.27 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=43.2
Q ss_pred EEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccccc
Q 016404 205 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 284 (390)
Q Consensus 205 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 284 (390)
.++.|+++|||+|++..+.|.++...+ .+ +..+.+|.+... ......+.+.+|+.++
T Consensus 20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~-----~~--~~~vdi~~~~~~----------------~~~~~~l~~~~g~~~v 76 (114)
T 2hze_A 20 KVTIFVKYTCPFCRNALDILNKFSFKR-----GA--YEIVDIKEFKPE----------------NELRDYFEQITGGKTV 76 (114)
T ss_dssp CEEEEECTTCHHHHHHHHHHTTSCBCT-----TS--EEEEEGGGSSSH----------------HHHHHHHHHHHSCCSS
T ss_pred CEEEEEeCCChhHHHHHHHHHHcCCCc-----Cc--eEEEEccCCCCh----------------HHHHHHHHHHhCCCCc
Confidence 466799999999999888775432110 11 555666543100 0112568888999999
Q ss_pred ceEEEECCCCcEEe
Q 016404 285 PALVLIGPDGKTIS 298 (390)
Q Consensus 285 P~~~lid~~G~v~~ 298 (390)
|+++ + +|+.+.
T Consensus 77 P~v~-i--~g~~ig 87 (114)
T 2hze_A 77 PRIF-F--GKTSIG 87 (114)
T ss_dssp CEEE-E--TTEEEE
T ss_pred CEEE-E--CCEEEe
Confidence 9875 4 577654
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.5e-05 Score=62.28 Aligned_cols=61 Identities=18% Similarity=0.343 Sum_probs=41.1
Q ss_pred EEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeEE
Q 016404 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLI 127 (390)
Q Consensus 48 ~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 127 (390)
.|+++|||+|++..+.|.++ + +++..+++|.+.+ .......+.+.+++.++|+++
T Consensus 53 vf~~~~Cp~C~~~k~~L~~~-------~--i~~~~vdId~~~~----------------~~~~~~~L~~~~g~~tvP~if 107 (146)
T 2ht9_A 53 IFSKTSCSYCTMAKKLFHDM-------N--VNYKVVELDLLEY----------------GNQFQDALYKMTGERTVPRIF 107 (146)
T ss_dssp EEECTTCHHHHHHHHHHHHH-------T--CCCEEEEGGGCTT----------------HHHHHHHHHHHHSCCCSCEEE
T ss_pred EEECCCChhHHHHHHHHHHc-------C--CCeEEEECccCcC----------------CHHHHHHHHHHhCCCCcCeEE
Confidence 39999999999999887764 2 2355566664411 011124688889999999985
Q ss_pred EEcCCCccc
Q 016404 128 PLASDGTLI 136 (390)
Q Consensus 128 ~~d~~G~i~ 136 (390)
+ +|+.+
T Consensus 108 -i--~G~~i 113 (146)
T 2ht9_A 108 -V--NGTFI 113 (146)
T ss_dssp -E--TTEEE
T ss_pred -E--CCEEE
Confidence 3 56654
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=59.34 Aligned_cols=91 Identities=14% Similarity=0.241 Sum_probs=58.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---Chh----------------HHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DEN----------------GFEEH 95 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~~~----------------~~~~~ 95 (390)
+.+..-.++.+++.|+.++||+|+++.+.+.++ . ++.++++.+.- ..+ .|..+
T Consensus 7 i~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~----~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~ 78 (147)
T 3gv1_A 7 IKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM----T----DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDW 78 (147)
T ss_dssp EEEEETTCCEEEEEEECTTCHHHHHHHHHHTTC----C----SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeeecCCCCEEEEEEECCCChhHHHHHHHHhhc----C----ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHH
Confidence 444445689999999999999999999987654 2 26677665431 111 12222
Q ss_pred HHh--CC--CcceecChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016404 96 FKC--MP--WLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 96 ~~~--~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
+.. .+ .....-..+.+..+++++||+++||+++ .+|+.
T Consensus 79 ~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~ 120 (147)
T 3gv1_A 79 MRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRT 120 (147)
T ss_dssp HHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCE
T ss_pred HhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEE
Confidence 221 11 0111113456789999999999999998 36753
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=9.2e-05 Score=51.96 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=39.6
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|+++||++|++..+.|.++ ++.+..+.++.+.+ ..+..+.+++.++|
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~----------~i~~~~~di~~~~~--------------------~~~~~~~~~~~~vP 52 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA----------GLAYNTVDISLDDE--------------------ARDYVMALGYVQAP 52 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT----------TCCCEEEETTTCHH--------------------HHHHHHHTTCBCCC
T ss_pred EEEEeCCCChHHHHHHHHHHHc----------CCCcEEEECCCCHH--------------------HHHHHHHcCCCccC
Confidence 5679999999999988888653 24456667765431 11222468999999
Q ss_pred eEEEECCCCcE
Q 016404 286 ALVLIGPDGKT 296 (390)
Q Consensus 286 ~~~lid~~G~v 296 (390)
+++ + +|++
T Consensus 53 ~l~-~--~g~~ 60 (75)
T 1r7h_A 53 VVE-V--DGEH 60 (75)
T ss_dssp EEE-E--TTEE
T ss_pred EEE-E--CCeE
Confidence 987 3 5654
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.67 E-value=1.8e-05 Score=67.55 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=41.5
Q ss_pred CCc--cccCc-cCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCC
Q 016404 32 QGK--VPLSS-CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDH 87 (390)
Q Consensus 32 ~g~--~~l~~-~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~ 87 (390)
.|+ ..+.. ..++++||.||+.|||||+.+.|.| .++.+++.++ +.+..+.++.
T Consensus 100 ~g~~y~~l~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~---v~~~~~~v~~ 158 (197)
T 1un2_A 100 DGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG---VKMTKYHVNF 158 (197)
T ss_dssp BTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT---CCEEEEECSS
T ss_pred CCCCceEccCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCC---CEEEEeccCc
Confidence 455 44543 4578999999999999999999998 8888887653 6677777764
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00038 Score=51.24 Aligned_cols=61 Identities=15% Similarity=0.334 Sum_probs=39.5
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH-cccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI-FNIKGI 284 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~ 284 (390)
|+.|+.+|||+|.+....|.+ .++.+..+.++.+.+. ...+.+. .|.+.+
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~----------~gi~y~~idi~~d~~~-------------------~~~~~~~~~G~~tV 56 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTA----------NRIAYDEVDIEHNRAA-------------------AEFVGSVNGGNRTV 56 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHH----------TTCCCEEEETTTCHHH-------------------HHHHHHHSSSSSCS
T ss_pred EEEEcCCCCHhHHHHHHHHHh----------cCCceEEEEcCCCHHH-------------------HHHHHHHcCCCCEe
Confidence 556899999999987766643 3455666777766432 1233333 378899
Q ss_pred ceEEEECCCCcEE
Q 016404 285 PALVLIGPDGKTI 297 (390)
Q Consensus 285 P~~~lid~~G~v~ 297 (390)
|++++ .||.++
T Consensus 57 P~I~i--~Dg~~l 67 (92)
T 2lqo_A 57 PTVKF--ADGSTL 67 (92)
T ss_dssp CEEEE--TTSCEE
T ss_pred CEEEE--eCCEEE
Confidence 98655 467665
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=3.7e-05 Score=60.86 Aligned_cols=62 Identities=15% Similarity=0.287 Sum_probs=41.1
Q ss_pred EEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceE
Q 016404 208 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPAL 287 (390)
Q Consensus 208 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 287 (390)
.|+++||++|+...+.|.++. . .+..+.+|.+.+. ......+.+.+++.++|++
T Consensus 31 vf~~~~Cp~C~~~~~~L~~~~--------i--~~~~vdid~~~~~----------------~~~~~~l~~~~g~~~vP~l 84 (130)
T 2cq9_A 31 IFSKTSCSYCTMAKKLFHDMN--------V--NYKVVELDLLEYG----------------NQFQDALYKMTGERTVPRI 84 (130)
T ss_dssp EEECSSCSHHHHHHHHHHHHT--------C--CCEEEETTTSTTH----------------HHHHHHHHHHHSSCCSSEE
T ss_pred EEEcCCChHHHHHHHHHHHcC--------C--CcEEEECcCCcCc----------------HHHHHHHHHHhCCCCcCEE
Confidence 399999999999999887652 2 2444555543100 0012457888999999998
Q ss_pred EEECCCCcEEe
Q 016404 288 VLIGPDGKTIS 298 (390)
Q Consensus 288 ~lid~~G~v~~ 298 (390)
+ + +|+.+.
T Consensus 85 ~-i--~G~~ig 92 (130)
T 2cq9_A 85 F-V--NGTFIG 92 (130)
T ss_dssp E-E--TTEEEE
T ss_pred E-E--CCEEEc
Confidence 5 4 677664
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=4.2e-05 Score=61.80 Aligned_cols=62 Identities=15% Similarity=0.273 Sum_probs=40.6
Q ss_pred EEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceE
Q 016404 208 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPAL 287 (390)
Q Consensus 208 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 287 (390)
.|+++||++|+...+.|.++. .. +..+.+|.+.+. ......+.+.+|+.++|++
T Consensus 53 vf~~~~Cp~C~~~k~~L~~~~--------i~--~~~vdId~~~~~----------------~~~~~~L~~~~g~~tvP~i 106 (146)
T 2ht9_A 53 IFSKTSCSYCTMAKKLFHDMN--------VN--YKVVELDLLEYG----------------NQFQDALYKMTGERTVPRI 106 (146)
T ss_dssp EEECTTCHHHHHHHHHHHHHT--------CC--CEEEEGGGCTTH----------------HHHHHHHHHHHSCCCSCEE
T ss_pred EEECCCChhHHHHHHHHHHcC--------CC--eEEEECccCcCC----------------HHHHHHHHHHhCCCCcCeE
Confidence 399999999999999887652 22 334455433100 0012457888999999998
Q ss_pred EEECCCCcEEe
Q 016404 288 VLIGPDGKTIS 298 (390)
Q Consensus 288 ~lid~~G~v~~ 298 (390)
+ + +|+.+.
T Consensus 107 f-i--~G~~ig 114 (146)
T 2ht9_A 107 F-V--NGTFIG 114 (146)
T ss_dssp E-E--TTEEEE
T ss_pred E-E--CCEEEe
Confidence 5 4 677653
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.7e-05 Score=54.56 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=41.5
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc-CcCCC
Q 016404 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY-RVDRI 123 (390)
Q Consensus 45 vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~v~~~ 123 (390)
.++.|+++||++|++..+.|.+. + +++..+++| ... ...+.+.+ ++.++
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~-------~--i~~~~vdv~-~~~--------------------~~~l~~~~~~~~~v 56 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKK-------G--VKYTDIDAS-TSL--------------------RQEMVQRANGRNTF 56 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHH-------T--CCEEEECSC-HHH--------------------HHHHHHHHHSSCCS
T ss_pred eEEEEECCCChhHHHHHHHHHHc-------C--CCcEEEECC-HHH--------------------HHHHHHHhCCCCCc
Confidence 36778999999999988877663 2 345666666 111 25677788 99999
Q ss_pred CeEEEEcCCCccc
Q 016404 124 PSLIPLASDGTLI 136 (390)
Q Consensus 124 P~~~~~d~~G~i~ 136 (390)
|++++ +|+.+
T Consensus 57 P~l~~---~g~~i 66 (89)
T 2klx_A 57 PQIFI---GDYHV 66 (89)
T ss_dssp CEEEE---TTEEC
T ss_pred CEEEE---CCEEE
Confidence 99853 56554
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00027 Score=59.05 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=34.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~ 246 (390)
.++++||.|+.-.||+|+.+.+.+.++.+++. .++.++.+.+
T Consensus 20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~----~~~~~~~~~~ 61 (184)
T 4dvc_A 20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP----EGAKFQKNHV 61 (184)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSC----TTCEEEEEEC
T ss_pred CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcC----CceEEEEEec
Confidence 35889999999999999999999999998886 3455555543
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00017 Score=51.61 Aligned_cols=60 Identities=15% Similarity=0.305 Sum_probs=42.0
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+++||++|++..+.|.+. + +++..++++.+.+ ....+.+.+++.++|+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-------~--i~~~~~~i~~~~~-------------------~~~~~~~~~~~~~vP~ 54 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK-------G--VSFQELPIDGNAA-------------------KREEMIKRSGRTTVPQ 54 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-------T--CCCEEEECTTCSH-------------------HHHHHHHHHSSCCSCE
T ss_pred EEEEECCCChhHHHHHHHHHHC-------C--CCcEEEECCCCHH-------------------HHHHHHHHhCCCCcCE
Confidence 5668999999999988877653 2 4466667765432 1246777889999999
Q ss_pred EEEEcCCCccc
Q 016404 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
++ + +|+.+
T Consensus 55 l~-~--~g~~i 62 (82)
T 1fov_A 55 IF-I--DAQHI 62 (82)
T ss_dssp EE-E--TTEEE
T ss_pred EE-E--CCEEE
Confidence 85 3 56544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 390 | ||||
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 4e-26 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 1e-17 | |
| d1v5na_ | 89 | g.49.1.3 (A:) Pdi-like hypothetical protein At1g60 | 2e-22 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 1e-17 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 4e-16 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 8e-14 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 6e-08 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 9e-12 | |
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 1e-05 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 1e-10 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 1e-08 | |
| d1sena_ | 135 | c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 | 1e-06 | |
| d1sena_ | 135 | c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 | 5e-05 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 2e-06 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 2e-06 | |
| d1zzoa1 | 134 | c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri | 3e-05 | |
| d1z6na1 | 166 | c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps | 8e-05 | |
| d1z5ye1 | 136 | c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG | 0.002 | |
| d1zmaa1 | 115 | c.47.1.1 (A:1-115) Bacterocin transport accessory | 0.004 |
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 100 bits (249), Expect = 4e-26
Identities = 54/134 (40%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Query: 187 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246
VL I + LAGKT+ YF A WCPP R+FT QLI+ Y FEV+L+S
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHA--EKKNFEVMLISW 70
Query: 247 DRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEM 304
D ++F ++ MPWLA+P+EDR + L F++K IP LV + D G I+T + M
Sbjct: 71 DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 305 I-SLYGAKAFPFTE 317
+ AK FP+
Sbjct: 131 VVKDPEAKDFPWPN 144
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 77.2 bits (189), Expect = 1e-17
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 25 VEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
L + L S GKT+ +FSA+WC P + FTPQL+ Y + EV+ IS
Sbjct: 11 TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLIS 69
Query: 85 FDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASD-GTLIEEDLIG 142
+D F++++ MPWLA+PF D + L + V IP+L+ + +D G +I
Sbjct: 70 WDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQART 129
Query: 143 LI-EDYGADAYPF 154
++ +D A +P+
Sbjct: 130 MVVKDPEAKDFPW 142
|
| >d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89 | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: C1-like domain domain: Pdi-like hypothetical protein At1g60420 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 88.4 bits (219), Expect = 2e-22
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 309 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFW 367
G+ TE R+ EIE + P++VK V H EHEL+L + Y CD C+ G W
Sbjct: 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 368 AFSCDVCNYDLHPKC 382
++ CD C++DLH KC
Sbjct: 61 SYHCDECDFDLHAKC 75
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 76.9 bits (188), Expect = 1e-17
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 187 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246
L ++++ L GKT+ LYF A WCPPCR FT L E Y + FEVVL+S
Sbjct: 13 NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH--VAKNFEVVLISW 70
Query: 247 DRDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEM 304
D + +F + MPWLA+P+ + +L + F ++ IP L+ I D G I T +
Sbjct: 71 DENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTR 130
Query: 305 I-SLYGAKAFPFT 316
+ FP+
Sbjct: 131 VIEDPDGANFPWP 143
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 72.7 bits (177), Expect = 4e-16
Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 24 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
G LLS+ G+V L S GKT+ L+FSA+WC PC+ FTP L + Y+ EV+ I
Sbjct: 10 GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLI 68
Query: 84 SFDHDENGFEEHFKCMPWLAVPFDETLHK-KLRIRYRVDRIPSLIPLASD-GTLIEEDLI 141
S+D +E+ F +++ MPWLA+PFD+ +L + V+ IP+LI + +D G +I
Sbjct: 69 SWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQAR 128
Query: 142 G-LIEDYGADAYPFT 155
+IED +P+
Sbjct: 129 TRVIEDPDGANFPWP 143
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 66.2 bits (160), Expect = 8e-14
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 187 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246
L R ++ V LAGK + YF A WCPP R FT QLIE Y++ + N
Sbjct: 11 KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDE 70
Query: 247 DRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGK-EM 304
+ D + + Q L + FN++ IP L+ + D G ++T + +
Sbjct: 71 EEDGFAGYFAKMPWLAVPFAQSEA-VQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 129
Query: 305 ISLYGAKAFPFTES 318
+ + FP+ ++
Sbjct: 130 VKDPEGEQFPWKDA 143
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 49.3 bits (116), Expect = 6e-08
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 24 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
G+E L G+V + S GK + +FSA+WC P + FTPQL++ YD V
Sbjct: 8 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCT 67
Query: 84 SFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASD-GTLIEEDLIG 142
+ ++ K +KL + V+ IP+LI + +D G ++
Sbjct: 68 WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 127
Query: 143 -LIEDYGADAYPFTRK 157
L++D + +P+
Sbjct: 128 TLVKDPEGEQFPWKDA 143
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 60.3 bits (145), Expect = 9e-12
Identities = 15/105 (14%), Positives = 32/105 (30%)
Query: 195 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254
+ K ++F + C C+ Q+ E ++ + N + S D
Sbjct: 22 TREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKI 81
Query: 255 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299
+ + P + L F + +PA + G+
Sbjct: 82 KETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHF 126
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 42.6 bits (99), Expect = 1e-05
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
Query: 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-HDENGFE 93
G K + F + C CK PQ+ + D + + + V + + G
Sbjct: 22 TREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKI 81
Query: 94 EHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137
+ + P L + + +P+ G L
Sbjct: 82 KETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRH 125
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 56.8 bits (136), Expect = 1e-10
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF--EVVLVSTDR 248
D+R +V K + F A WCP C S Q + + K ++ + ++
Sbjct: 12 DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEK 71
Query: 249 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299
+F ++ + + +P + + NI P+ LIG DG
Sbjct: 72 KDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRI 122
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 51.4 bits (122), Expect = 1e-08
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 11/128 (8%)
Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD---EN 90
+ K + F A+WC C + Q + + L + +
Sbjct: 15 PASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDG 74
Query: 91 GFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI--------EEDLIG 142
F++ + + + +P + + PS + DG + E +
Sbjct: 75 DFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALA 134
Query: 143 LIEDYGAD 150
LI D AD
Sbjct: 135 LIRDPNAD 142
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 1e-06
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 6/114 (5%)
Query: 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD--LNHSI 259
G + + WC C++ + E + + N V+V+ + + + D +
Sbjct: 25 GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNF----VMVNLEDEEEPKDEDFSPDG 80
Query: 260 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAF 313
I + D + + I N G P+ + + KE AF
Sbjct: 81 GYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAF 134
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 5e-05
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 5/113 (4%)
Query: 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKC--M 99
G + + +WC CK P+ + + + ++ + +E +E F
Sbjct: 25 GLPLMVIIHKSWCGACKALKPKFAESTEISELSH---NFVMVNLEDEEEPKDEDFSPDGG 81
Query: 100 PWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIGLIEDYGADAY 152
+ F + K + PS + + + E DA+
Sbjct: 82 YIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAF 134
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 45.0 bits (105), Expect = 2e-06
Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 6/105 (5%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
+ L GK L+F WCP C + L +V R
Sbjct: 13 SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI------ATRAD 66
Query: 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 295
+ L + A + +N+ PA V DG
Sbjct: 67 VGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGT 111
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 45.0 bits (105), Expect = 2e-06
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
D + +S+ GKT+ + A WC PCR L E+ +L + + + D +
Sbjct: 45 DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEK 104
Query: 251 KEFDLNHSIMPWLAIPYEDRAR--QDLCRIFNIKGIPALVLIGPDGKTIST 299
+ L + + L + +A+ QDL I G+P VL+ P G I+T
Sbjct: 105 PKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 155
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 5/111 (4%)
Query: 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250
D L GK L+F A WCP C+ + +V +
Sbjct: 14 DGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQE 73
Query: 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNG 301
LA + F + PA + P G G
Sbjct: 74 FVNKYPVKTFTQLADT-----DGSVWANFGVTQQPAYAFVDPHGNVDVVRG 119
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.7 bits (94), Expect = 8e-05
Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 17/135 (12%)
Query: 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256
+ + + L G WCP C+ + L N ++ D L
Sbjct: 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLA 105
Query: 257 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFT 316
+ + D + P VL G L KA +
Sbjct: 106 LERIAIPLVLVLDEEFNL---LGRFVERPQAVLDGGPQA-----------LAAYKAGDYL 151
Query: 317 ESRIAEIETALKKEG 331
E I ++ ++
Sbjct: 152 EHAIGDVLAIIEGAA 166
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Score = 35.8 bits (81), Expect = 0.002
Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 14/129 (10%)
Query: 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 261
GK + L A WCP R+ L ++ VV ++ D ++ +
Sbjct: 20 GKPVLLNVWATWCPTSRAEHQYLNQLS-------AQGIRVVGMNYKDDRQKAISWLKELG 72
Query: 262 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIA 321
L + G P LI +G G E I
Sbjct: 73 NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYR-------HAGDLNPRVWEEEIK 125
Query: 322 EIETALKKE 330
+ KE
Sbjct: 126 PLWEKYSKE 134
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Score = 34.9 bits (79), Expect = 0.004
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 239
+T + G CP CR F L V E K
Sbjct: 26 KETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFIN 63
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.93 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.92 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.91 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.91 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.91 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.91 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.9 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.9 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.9 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.88 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.87 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.87 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.86 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.86 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.86 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.84 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.83 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.82 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.82 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.81 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.81 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.81 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.81 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.79 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.76 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.76 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.76 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.76 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.75 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.75 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.74 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.74 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.73 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.73 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.73 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.72 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.7 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.7 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.68 | |
| d1v5na_ | 89 | Pdi-like hypothetical protein At1g60420 {Thale cre | 99.67 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.67 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.65 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.65 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.64 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.63 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.62 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.62 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.62 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.61 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.6 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.59 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.59 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.58 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.58 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.58 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.58 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.57 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.56 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.55 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.55 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.55 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.55 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.55 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.54 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.54 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.54 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.53 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.53 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.52 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.52 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.51 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.5 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.49 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.49 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.49 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.49 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.48 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.48 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.48 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.48 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.47 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.47 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.47 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.47 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.47 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.46 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.46 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.46 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.46 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.46 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.46 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.45 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.45 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.44 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.43 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.43 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.43 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.42 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.4 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.4 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.39 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.39 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.38 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.38 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.38 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.38 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.38 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.37 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.37 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.37 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.36 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.36 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.35 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.35 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.32 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.32 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.3 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.28 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.27 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 99.23 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.23 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.21 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.2 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.16 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.16 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.16 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.16 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 99.14 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.12 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.12 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.12 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.07 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 99.07 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.07 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 99.02 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.94 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.87 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.84 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.83 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.71 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.7 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.64 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.6 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 98.58 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.43 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.08 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 98.07 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 98.01 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.97 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.95 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.89 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 97.87 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.74 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.69 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.54 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.38 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.2 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 97.11 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 97.0 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 96.96 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.94 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.85 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 96.71 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 96.54 | |
| d2fc7a1 | 69 | Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu | 96.51 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 96.29 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 96.21 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 96.05 | |
| d1tota1 | 52 | CREB-binding protein, CBP {Mouse (Mus musculus) [T | 96.04 | |
| d2dipa1 | 85 | Zinc finger ZZ-type-containing protein 2 {Human (H | 95.92 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.92 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 95.84 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 95.56 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 95.43 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 95.36 | |
| d1faqa_ | 52 | RAF-1 {Human (Homo sapiens) [TaxId: 9606]} | 95.33 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 95.25 | |
| d1kbea_ | 49 | Kinase suppressor of Ras, Ksr {Mouse (Mus musculus | 95.25 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 94.49 | |
| d1tbna_ | 66 | Protein kinase c-gamma {Rat (Rattus rattus) [TaxId | 94.43 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 94.29 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 94.06 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 93.75 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 93.27 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 92.91 | |
| d1xa6a3 | 62 | Beta-chimaerin, middle domain {Human (Homo sapiens | 92.31 | |
| d1r79a_ | 84 | Diacylglycerol kinase delta {Human (Homo sapiens) | 92.02 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 91.47 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 91.4 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 90.78 | |
| d1ptqa_ | 50 | Protein kinase C-delta (PKCdelta) {Mouse (Mus musc | 89.99 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 89.5 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 88.92 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 87.14 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 86.83 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 85.8 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 82.38 | |
| d1twfl_ | 46 | RBP12 subunit of RNA polymerase II {Baker's yeast | 82.14 |
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.93 E-value=1.7e-25 Score=181.82 Aligned_cols=136 Identities=35% Similarity=0.667 Sum_probs=116.7
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 257 (390)
++..+|+++. ..+|.++++++++||+|+|+|||+||++|+.++|.|++++++|.. ..++.|++|+.|.+.+.+.+++
T Consensus 4 ~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~--~~~~~vi~is~d~~~~~~~~~~ 81 (144)
T d1o73a_ 4 LAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV--AKNFEVVLISWDENESDFHDYY 81 (144)
T ss_dssp GGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHHHH
T ss_pred cccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhh--ccCeEEEEEecchhHHHHHHHH
Confidence 5778899988 778888999999999999999999999999999999999999963 3689999999999999999999
Q ss_pred hcCCcccccCCch-HHHHHHHHccccccceEEEECCC-CcEEeeCcchhhh-hcCccCCCCC
Q 016404 258 SIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMIS-LYGAKAFPFT 316 (390)
Q Consensus 258 ~~~~~~~~~~~~~-~~~~l~~~~~v~~~P~~~lid~~-G~v~~~~g~~~~~-~~g~~~~p~~ 316 (390)
...+|..+++..+ ....+.+.|+|.++|+++|||++ |+|+.++++.... ...+..|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw~ 143 (144)
T d1o73a_ 82 GKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp TTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred HhccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCCC
Confidence 9999999888654 45579999999999999999997 9999988754333 3445555653
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.92 E-value=8.2e-25 Score=177.47 Aligned_cols=126 Identities=41% Similarity=0.745 Sum_probs=110.9
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
+.+|..+++++++||+|+|+|||+||++|+.++|.|++++++|++ ..+++|++|+.|.+.+++.+++..++|..+++.
T Consensus 15 ~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~--~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~ 92 (144)
T d1i5ga_ 15 KGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE--KKNFEVMLISWDESAEDFKDYYAKMPWLALPFE 92 (144)
T ss_dssp ETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred cCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHh--ccCcEEEEEeccccHHHHHHHHHhCCCCceeeE
Confidence 788999999999999999999999999999999999999999974 357999999999999999999999999888886
Q ss_pred chH-HHHHHHHccccccceEEEECCC-CcEEeeCcchhhhh-cCccCCCCC
Q 016404 269 DRA-RQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMISL-YGAKAFPFT 316 (390)
Q Consensus 269 ~~~-~~~l~~~~~v~~~P~~~lid~~-G~v~~~~g~~~~~~-~g~~~~p~~ 316 (390)
+.. ...+.+.|+|.++|+++|||++ |+|+..+|+..+.. ..+..|||.
T Consensus 93 d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw~ 143 (144)
T d1i5ga_ 93 DRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp CHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred ChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCCC
Confidence 654 3468999999999999999996 99999998877754 345566653
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.91 E-value=2.3e-24 Score=174.85 Aligned_cols=129 Identities=33% Similarity=0.707 Sum_probs=111.0
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
..+++.+|+ +++++++||+|+|+|||+||++|+.++|.|.+++++++++ .+++|++|+.|.+.+++++++++++|..+
T Consensus 11 ~~~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~-~~~~vi~vs~D~~~~~~~~~~~~~~~~~~ 89 (144)
T d1i5ga_ 11 TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKMPWLAL 89 (144)
T ss_dssp SEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEEC
T ss_pred hhhccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc-cCcEEEEEeccccHHHHHHHHHhCCCCce
Confidence 346777888 9999999999999999999999999999999999999864 24999999999999999999999999888
Q ss_pred ec-ChhHHHHHHHhcCcCCCCeEEEEcCC-Cccccccccccccc-cCCCCCCCC
Q 016404 105 PF-DETLHKKLRIRYRVDRIPSLIPLASD-GTLIEEDLIGLIED-YGADAYPFT 155 (390)
Q Consensus 105 ~~-~~~~~~~l~~~~~v~~~P~~~~~d~~-G~i~~~~~~~~i~~-~~~~~~~~~ 155 (390)
++ +.+....+.+.|++.++|+++++|++ |+++.+++...+.. .....|||.
T Consensus 90 ~~~d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw~ 143 (144)
T d1i5ga_ 90 PFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP 143 (144)
T ss_dssp CTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred eeEChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCCC
Confidence 88 44555678999999999999999986 89998887766654 445556653
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.3e-24 Score=184.03 Aligned_cols=146 Identities=11% Similarity=0.122 Sum_probs=114.9
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 250 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 250 (390)
+|.++|+|++ +.+|+.++|++++||+|||+|||+||++|++++|.|.+++++|+ .++.+++|.+.. ..
T Consensus 8 vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~----~~v~~v~i~snd~~~~~~~~~ 83 (187)
T d2cvba1 8 LESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYR----GKVAFVGINANDYEKYPEDAP 83 (187)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTT----TTEEEEEEECCCTTTCGGGSH
T ss_pred CCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcc----ccceeeeeeccccccccccch
Confidence 5899999999 99999999999999999999999999999999999999999997 468888887532 33
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHh
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 330 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 330 (390)
+.++.+....+ +.+|+..|....+++.|++.++|+++|||++|+|+++...+. + ++... +.+ ..+|.++++..
T Consensus 84 e~~~~~~~~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd-~-~~~~~-~~~---~~~L~~Ai~~l 156 (187)
T d2cvba1 84 EKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVND-N-PKDPS-KVQ---SHDLEAAIEAL 156 (187)
T ss_dssp HHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSS-C-TTCGG-GCC---CCHHHHHHHHH
T ss_pred HHHHHHHHHhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeecC-C-CCCCC-CCC---HHHHHHHHHHH
Confidence 56666666655 567888888899999999999999999999999999854332 1 22111 112 23455666665
Q ss_pred cCCCC
Q 016404 331 GDALP 335 (390)
Q Consensus 331 ~~~~p 335 (390)
+++.+
T Consensus 157 l~g~~ 161 (187)
T d2cvba1 157 LRGEE 161 (187)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 55544
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.91 E-value=3.5e-24 Score=174.17 Aligned_cols=137 Identities=34% Similarity=0.663 Sum_probs=118.1
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 257 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 257 (390)
++..+|+|++ +.+|+++++++++||+|+|+||++||++|+.++|.|.+++++|+. ..++.+|+|+.|.+.+++..++
T Consensus 2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~--~~~~~~v~is~d~~~~~~~~~~ 79 (144)
T d1o8xa_ 2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE--SKNFEVVFCTWDEEEDGFAGYF 79 (144)
T ss_dssp GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCCSHHHHHHHH
T ss_pred CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccc--ccccccccccccccHHHHHHHH
Confidence 4678899999 999999999999999999999999999999999999999999974 3579999999999999999999
Q ss_pred hcCCcccccCCc-hHHHHHHHHccccccceEEEECCC-CcEEeeCcchhhh-hcCccCCCCCh
Q 016404 258 SIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMIS-LYGAKAFPFTE 317 (390)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid~~-G~v~~~~g~~~~~-~~g~~~~p~~~ 317 (390)
....+..+++.. +....+.+.|+|.++|+++|||++ |+|+..+|+.... ......|||.+
T Consensus 80 ~~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~~ 142 (144)
T d1o8xa_ 80 AKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD 142 (144)
T ss_dssp TTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred hhccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCCC
Confidence 988999888755 456689999999999999999998 8999988765443 33445555543
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=2.2e-24 Score=173.06 Aligned_cols=115 Identities=23% Similarity=0.280 Sum_probs=103.5
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhh
Q 016404 180 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 258 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 258 (390)
|++.++|++ +.+|+++++++++||++||+|||+||++|+.++|.|+++++++ .++.+++|+.+.+...+.++.+
T Consensus 1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~-----~~v~~v~v~~~~~~~~~~~~~~ 75 (134)
T d1lu4a_ 1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAAN-----PAVTFVGIATRADVGAMQSFVS 75 (134)
T ss_dssp CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEECSSCHHHHHHHHH
T ss_pred CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhh-----ccccccccccccchhhhhhhhh
Confidence 567899999 9999999999999999999999999999999999999998876 4588999999988888888888
Q ss_pred cCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 259 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
.++ +.+|...|....+++.|++.++|+++|||++|++++..
T Consensus 76 ~~~-~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~ 116 (134)
T d1lu4a_ 76 KYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVN 116 (134)
T ss_dssp HHT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEEC
T ss_pred hhc-cccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEEe
Confidence 776 46777777778999999999999999999999998753
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=6.5e-24 Score=171.01 Aligned_cols=133 Identities=23% Similarity=0.452 Sum_probs=115.8
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhh
Q 016404 180 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 258 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 258 (390)
|.++|+|++ +.+|+++++++++||++||+||++||++|..++|.+++++++|.+ .++.+++|+++.+..+++++.+
T Consensus 2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~i~~~~~~~~~~~~~~ 78 (137)
T d1st9a_ 2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---QGVEIVAVNVGESKIAVHNFMK 78 (137)
T ss_dssp CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEEESCCHHHHHHHHH
T ss_pred cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccc---cccccccccccchhhhHHHHHH
Confidence 788999999 999999999999999999999999999999999999999999986 7899999999988889999988
Q ss_pred cCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHH
Q 016404 259 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETAL 327 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~ 327 (390)
+++ +.+|+..|....+++.|++.++|+++|||++|+|+++ ..|.. +++.++++.+.+
T Consensus 79 ~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~-------~~G~~----~~~~~~~~l~~l 135 (137)
T d1st9a_ 79 SYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV-------VTGTM----TESMIHDYMNLI 135 (137)
T ss_dssp HTT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEE-------EESCC----CHHHHHHHHHHH
T ss_pred HcC-CCccccccccchhhhhhhccccceEEEECCCCEEEEE-------EECCC----CHHHHHHHHHhh
Confidence 766 3467777777899999999999999999999999988 34533 345566665544
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.90 E-value=1.9e-23 Score=169.63 Aligned_cols=129 Identities=37% Similarity=0.757 Sum_probs=108.6
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
.++...+|. ++|++++||+|+|+|||+||++|+.++|.|+++++++... .++++++|+.|.+.+.+++++.+++|..+
T Consensus 11 ~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~ 89 (144)
T d1o73a_ 11 ATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYGKMPWLAL 89 (144)
T ss_dssp TCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEEC
T ss_pred ceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchhHHHHHHHHHhccccce
Confidence 345556666 9999999999999999999999999999999999999643 24999999999999999999999999988
Q ss_pred ecC-hhHHHHHHHhcCcCCCCeEEEEcCC-Cccccccccc-cccccCCCCCCCC
Q 016404 105 PFD-ETLHKKLRIRYRVDRIPSLIPLASD-GTLIEEDLIG-LIEDYGADAYPFT 155 (390)
Q Consensus 105 ~~~-~~~~~~l~~~~~v~~~P~~~~~d~~-G~i~~~~~~~-~i~~~~~~~~~~~ 155 (390)
+++ .+....+.+.|++.++|+++++|++ |+++.+++.. .+.+.....+||.
T Consensus 90 ~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw~ 143 (144)
T d1o73a_ 90 PFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP 143 (144)
T ss_dssp CTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred eeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCCC
Confidence 884 4556679999999999999999997 8999877643 4444556666664
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=2.1e-23 Score=167.36 Aligned_cols=112 Identities=18% Similarity=0.244 Sum_probs=102.0
Q ss_pred CceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCc
Q 016404 184 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPW 262 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 262 (390)
.+|++ +.+|+++++++++||++||+|||+||++|+.++|.|.+++++++ ++.+++|+.+........++..+++
T Consensus 6 ~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~-----~~~~v~v~~~d~~~~~~~~~~~~~~ 80 (134)
T d1zzoa1 6 LQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----EVTFVGVAGLDQVPAMQEFVNKYPV 80 (134)
T ss_dssp GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSSCHHHHHHHHHHTTC
T ss_pred cceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc-----ccccccccccccchhHHHHHHhcCC
Confidence 57999 99999999999999999999999999999999999999999885 3678888888888889999998888
Q ss_pred ccccCCchHHHHHHHHccccccceEEEECCCCcEEeeC
Q 016404 263 LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 300 (390)
..+|...|....+.+.|++.++|+++|||++|+|++..
T Consensus 81 ~~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~~ 118 (134)
T d1zzoa1 81 KTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVR 118 (134)
T ss_dssp TTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred cceeEEeeccchHHHhcCCCccCeEEEECCCCeEEEEE
Confidence 88888888788999999999999999999999998763
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.88 E-value=2.5e-23 Score=168.79 Aligned_cols=110 Identities=23% Similarity=0.322 Sum_probs=99.7
Q ss_pred EE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-----CHHHHHHhhhcC
Q 016404 187 VL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DHKEFDLNHSIM 260 (390)
Q Consensus 187 ~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~ 260 (390)
++ +.+|+++++++++||++||+|||+||++|++++|.|++++++++. .++.+++|+.+. ......+++...
T Consensus 7 ~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 83 (143)
T d2fy6a1 7 TLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKF---SSANLITVASPGFLHEKKDGDFQKWYAGL 83 (143)
T ss_dssp TCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGG---TTSEEEEEECTTSTTCCCTTHHHHHHTTS
T ss_pred eeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhcc---CCcEEEEEeeeecccccchhhhhhhhhhc
Confidence 45 899999999999999999999999999999999999999999986 789999999753 335677778888
Q ss_pred CcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 261 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+..+|+..|.+..+++.|++.++|+++|||++|+|+++
T Consensus 84 ~~~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~ 122 (143)
T d2fy6a1 84 NYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRI 122 (143)
T ss_dssp CCTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred CCcccccccccchHHHHHcCCCccCEEEEECCCCEEEEE
Confidence 888999988888899999999999999999999999988
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=5e-23 Score=165.49 Aligned_cols=104 Identities=18% Similarity=0.118 Sum_probs=91.5
Q ss_pred eCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccC
Q 016404 189 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY 267 (390)
Q Consensus 189 ~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 267 (390)
+..|+.++.+.+ +||+|||+|||+||++|+.++|.|+++++ .++.+++++.+.+......++...++...+.
T Consensus 6 d~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~-------~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (136)
T d1z5ye1 6 DNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA-------QGIRVVGMNYKDDRQKAISWLKELGNPYALS 78 (136)
T ss_dssp SSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH-------TTCCEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred cCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh-------hhhhhcccccccchhhhHHHHHHcCCcccee
Confidence 667999999998 89999999999999999999999988743 4567999999998888888888777666666
Q ss_pred CchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 268 EDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 268 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..|.+..+.+.|++.++|+++|||++|+|+.+
T Consensus 79 ~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~ 110 (136)
T d1z5ye1 79 LFDGDGMLGLDLGVYGAPETFLIDGNGIIRYR 110 (136)
T ss_dssp EEESSCHHHHHHTCCSBSEEEEECTTSCEEEE
T ss_pred ecccchhHHHhcccCCcceEEEEcCCCEEEEE
Confidence 66677889999999999999999999999988
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=2.1e-22 Score=163.30 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=101.2
Q ss_pred hhccCCceEE---eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-----CH
Q 016404 179 LAIEGRDYVL---SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DH 250 (390)
Q Consensus 179 ~g~~~p~f~l---~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~ 250 (390)
+|.++|+|++ ..+|+.++++.++||+++|+||++||++|++++|.|++++++|+ +++.+++|+++. +.
T Consensus 3 ~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~----~~~~~i~v~~~~~~~~~~~ 78 (143)
T d2b5xa1 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQ----DQLNVVAVHMPRSEDDLDP 78 (143)
T ss_dssp TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTSEEEEEECCCSTTTSSH
T ss_pred CCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhh----ccccceeEEeeccccccch
Confidence 5889999986 35899999999999999999999999999999999999999997 568899998753 34
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
..+.++...+++ .+|+..|....+++.|++.++|++++||++|+|+++
T Consensus 79 ~~~~~~~~~~~~-~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~ 126 (143)
T d2b5xa1 79 GKIKETAAEHDI-TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHF 126 (143)
T ss_dssp HHHHHHHHHTTC-CSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred hhhhhHHHhhcc-CccccccCccchHHHcCCCcCCEEEEECCCCEEEEE
Confidence 567777777764 677777778899999999999999999999999988
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.86 E-value=9.1e-22 Score=159.67 Aligned_cols=130 Identities=35% Similarity=0.736 Sum_probs=110.9
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
...+.+.+|+ +++++++||+|+|+||++||++|+.++|.|.+++++++.. ..+.+++|+.|.+.+.+..++....|..
T Consensus 8 ~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~-~~~~~v~is~d~~~~~~~~~~~~~~~~~ 86 (144)
T d1o8xa_ 8 GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYFAKMPWLA 86 (144)
T ss_dssp TCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTCSSEE
T ss_pred CcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccc-cccccccccccccHHHHHHHHhhccccc
Confidence 3558888899 9999999999999999999999999999999999999764 2499999999999999999999999988
Q ss_pred eec-ChhHHHHHHHhcCcCCCCeEEEEcCC-Cccccccccccc-cccCCCCCCCC
Q 016404 104 VPF-DETLHKKLRIRYRVDRIPSLIPLASD-GTLIEEDLIGLI-EDYGADAYPFT 155 (390)
Q Consensus 104 ~~~-~~~~~~~l~~~~~v~~~P~~~~~d~~-G~i~~~~~~~~i-~~~~~~~~~~~ 155 (390)
+++ ..+...++.+.|+++++|+++++|++ |+|+.+++...+ .+.....+||.
T Consensus 87 ~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~ 141 (144)
T d1o8xa_ 87 VPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWK 141 (144)
T ss_dssp CCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCC
T ss_pred eeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCC
Confidence 888 44566789999999999999999987 899877765444 34555556654
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.86 E-value=1.5e-21 Score=163.95 Aligned_cols=117 Identities=29% Similarity=0.430 Sum_probs=100.4
Q ss_pred hccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-CHHHHHHhh
Q 016404 180 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-DHKEFDLNH 257 (390)
Q Consensus 180 g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-~~~~~~~~~ 257 (390)
+.++|+|++ +.+|+.++|++++||+|||+||++||++|+.+.+.++++++++.. .++.|++|++|. +.+++++++
T Consensus 33 ~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~---~~~~vv~vs~d~~~~~~~~~~~ 109 (176)
T d1jfua_ 33 PLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSG---PNFEVVAINIDTRDPEKPKTFL 109 (176)
T ss_dssp CCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB---TTEEEEEEECCCSCTTHHHHHH
T ss_pred CCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccc---cccccccccccccchhhhhhhH
Confidence 557899999 999999999999999999999999999999999999999999986 889999999985 467788888
Q ss_pred hcCCcccccCCchHH----HHHHHHccccccceEEEECCCCcEEee
Q 016404 258 SIMPWLAIPYEDRAR----QDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 258 ~~~~~~~~~~~~~~~----~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+..++...++..+.. ..+...|++.++|+++|||++|+|+.+
T Consensus 110 ~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~ 155 (176)
T d1jfua_ 110 KEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 155 (176)
T ss_dssp HHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred hhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEE
Confidence 877765555544433 345556678899999999999999988
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.86 E-value=1.7e-22 Score=163.98 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=90.0
Q ss_pred CCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCch
Q 016404 191 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR 270 (390)
Q Consensus 191 ~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 270 (390)
++..+++++++||++||+|||+||++|+.++|.+.++++. .++++++|+.+....+..++...+++...+...|
T Consensus 20 ~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d 93 (144)
T d1knga_ 20 QVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD------KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVD 93 (144)
T ss_dssp ECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC------TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEE
T ss_pred cCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhc------cCceeEEEEeeechHHHHHHHHHcCCcccccccc
Confidence 3477899999999999999999999999999999887554 3468999999998888888888777666666666
Q ss_pred HHHHHHHHccccccceEEEECCCCcEEee
Q 016404 271 ARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 271 ~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
.+..+.+.|++.++|+++|||++|+|+++
T Consensus 94 ~~~~~~~~~~v~~~P~~~liD~~G~i~~~ 122 (144)
T d1knga_ 94 ANGRASIEWGVYGVPETFVVGREGTIVYK 122 (144)
T ss_dssp TTSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred ccchhhhhcCccccceEEEEcCCCeEEEE
Confidence 77899999999999999999999999998
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=2.9e-21 Score=154.65 Aligned_cols=109 Identities=16% Similarity=0.178 Sum_probs=98.0
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
-+++.+.+|+ +++++++||+++|+||++||++|+.++|.|.++++++++ +.+++|+.+.+....++++.++.+..
T Consensus 7 df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~~~~ 82 (134)
T d1zzoa1 7 QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYPVKT 82 (134)
T ss_dssp CCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTTCTT
T ss_pred ceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcCCcc
Confidence 3669999999 999999999999999999999999999999999999876 45888888888889999999998877
Q ss_pred eecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 104 VPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 104 ~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
+|...+....+.+.|++.++|+++++|++|++.+
T Consensus 83 ~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~ 116 (134)
T d1zzoa1 83 FTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDV 116 (134)
T ss_dssp SEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred eeEEeeccchHHHhcCCCccCeEEEECCCCeEEE
Confidence 7776666678999999999999999999999864
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=5.9e-21 Score=152.73 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=95.5
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
+++.+.+|+ +++++++||+++|+||++|||+|+.++|.|+++++++++ +.+++|+.+.+.+.+++|+++++ +.+
T Consensus 7 f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~v~v~~~~~~~~~~~~~~~~~-~~~ 81 (134)
T d1lu4a_ 7 FTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA----VTFVGIATRADVGAMQSFVSKYN-LNF 81 (134)
T ss_dssp CEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHHT-CCS
T ss_pred ceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhcc----ccccccccccchhhhhhhhhhhc-ccc
Confidence 569999999 999999999999999999999999999999999987643 78999999989999999999887 456
Q ss_pred ecChhHHHHHHHhcCcCCCCeEEEEcCCCcccc
Q 016404 105 PFDETLHKKLRIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 105 ~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
|+..+....+++.|++.++|+++++|++|+++.
T Consensus 82 p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~ 114 (134)
T d1lu4a_ 82 TNLNDADGVIWARYNVPWQPAFVFYRADGTSTF 114 (134)
T ss_dssp EEEECTTSHHHHHTTCCSSSEEEEECTTSCEEE
T ss_pred ceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEE
Confidence 665555678999999999999999999998764
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.82 E-value=1.2e-20 Score=155.85 Aligned_cols=140 Identities=19% Similarity=0.284 Sum_probs=109.8
Q ss_pred hhccCCceEE-eCCCCeeeeccc--CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSEL--AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
+|+++|+|++ +.+|+.++|+++ +||++||+|| ++|||+|..+++.++++++++++ .++.+++|+.|. ....+
T Consensus 4 vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~d~-~~~~~ 79 (160)
T d2cx4a1 4 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK---ANAEVLAISVDS-PWCLK 79 (160)
T ss_dssp TTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTST---TCCEEEEEESSC-HHHHH
T ss_pred CCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccc---cccccccccccc-hhhhh
Confidence 5899999999 999999999998 7999999998 99999999999999999999986 789999999874 44444
Q ss_pred HhhhcCCcccccCCchHHHHHHHHccc----------cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHH
Q 016404 255 LNHSIMPWLAIPYEDRARQDLCRIFNI----------KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE 324 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v----------~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~ 324 (390)
++....+ +.+++..|.+..+++.||+ ...|+++|||++|+|+++. .+ ..+..+..++++.
T Consensus 80 ~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~-------~~--~~~~~~~~~~eil 149 (160)
T d2cx4a1 80 KFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKW-------VT--DNPLNEPDYDEVV 149 (160)
T ss_dssp HHHHHHT-CSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEE-------EC--SSTTCCCCHHHHH
T ss_pred hhcccce-eeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEE-------Ee--CCCCCCCCHHHHH
Confidence 4444332 3456666777899999987 3478999999999999883 22 1233444566776
Q ss_pred HHHHHhcC
Q 016404 325 TALKKEGD 332 (390)
Q Consensus 325 ~~~~~~~~ 332 (390)
+.+++.+.
T Consensus 150 ~~l~~l~~ 157 (160)
T d2cx4a1 150 REANKIAG 157 (160)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 76666544
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=1.1e-20 Score=159.65 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=97.0
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHHH
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFK 97 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~~ 97 (390)
++|.+.+|+ ++|++++||+|||.||++|||+|+.++|.|.+++++|+++ +.+++|+.+. +.+.++++.+
T Consensus 15 F~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~~~~~~e~~~~~~~ 91 (187)
T d2cvba1 15 AELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPEKMAAFAE 91 (187)
T ss_dssp CEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHHHHHHHHH
T ss_pred cEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccccccchHHHHHHHH
Confidence 459999999 9999999999999999999999999999999999999864 8888887632 3456788888
Q ss_pred hCCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccccccccc
Q 016404 98 CMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEEDLIG 142 (390)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~~~~ 142 (390)
..+ +.+|+..|....+++.|++.++|+++++|++|+++++..++
T Consensus 92 ~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~id 135 (187)
T d2cvba1 92 EHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVN 135 (187)
T ss_dssp HHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSS
T ss_pred HhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeec
Confidence 776 45666566668999999999999999999999999876544
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=4.5e-20 Score=153.55 Aligned_cols=119 Identities=15% Similarity=0.211 Sum_probs=101.9
Q ss_pred hhccCCceEE-eCCC---------------CeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEE
Q 016404 179 LAIEGRDYVL-SRDH---------------RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEV 241 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g---------------~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~v 241 (390)
+|+++|+|++ +..| +.+++++++||++||+|| ++|||+|..+++.|.+++++|++ .++++
T Consensus 5 vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~---~g~~v 81 (169)
T d2bmxa1 5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED---RDAQI 81 (169)
T ss_dssp TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT---TTEEE
T ss_pred CCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccc---cCcce
Confidence 5999999999 6666 688999999999999999 99999999999999999999987 88999
Q ss_pred EEEecCCCH--HHHHHhhhcCCcccccCCchHHHHHHHHccc-----cccceEEEECCCCcEEeeC
Q 016404 242 VLVSTDRDH--KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 242 v~v~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~v~~~~ 300 (390)
++|+.|... .+|...+.....+.+|+..|.+..+++.||+ ...|+++|||++|+|++..
T Consensus 82 v~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~ 147 (169)
T d2bmxa1 82 LGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS 147 (169)
T ss_dssp EEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred eeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEE
Confidence 999998743 3444444444456788888889999999998 6789999999999998873
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.81 E-value=1.7e-20 Score=151.90 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=98.1
Q ss_pred eeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-----ChhHHHHHHHhCC
Q 016404 27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----DENGFEEHFKCMP 100 (390)
Q Consensus 27 ~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~ 100 (390)
+|.+.+|+ ++|++++||+++|+|||+||++|++++|.|.+++++++..+ +++++|+.+. +...+.++.....
T Consensus 7 ~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
T d2fy6a1 7 TLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLN 84 (143)
T ss_dssp TCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred eeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC--cEEEEEeeeecccccchhhhhhhhhhcC
Confidence 58999999 99999999999999999999999999999999999998876 8899998753 3346677888888
Q ss_pred CcceecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+..+|+..+....+++.|++.++|+++++|++|+++++.
T Consensus 85 ~~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~ 123 (143)
T d2fy6a1 85 YPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIV 123 (143)
T ss_dssp CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEE
T ss_pred CcccccccccchHHHHHcCCCccCEEEEECCCCEEEEEE
Confidence 888888666678999999999999999999999988654
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.81 E-value=4e-20 Score=152.89 Aligned_cols=118 Identities=23% Similarity=0.247 Sum_probs=98.1
Q ss_pred HhhccCCceEE-e----CCCCeeeecccCCcEEEEEEccC-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHH
Q 016404 178 LLAIEGRDYVL-S----RDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 251 (390)
Q Consensus 178 l~g~~~p~f~l-~----~~g~~~~l~~~~gk~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~ 251 (390)
++|.++|+|++ + .+++++++++++||++||+||+. |||+|..+++.|++++++|++ .+++|++||.|.. .
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~---~g~~vv~IS~D~~-~ 77 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK---LGVEVYSVSTDTH-F 77 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH---TTEEEEEEESSCH-H
T ss_pred CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcc---cceEEEecccccH-H
Confidence 68999999998 3 34457999999999999999966 999999999999999999987 8999999999953 3
Q ss_pred HHHHhhhcC---CcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016404 252 EFDLNHSIM---PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 252 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
...++..++ .-+.+|+..|.+..++++||+. ..|++||||++|+|++.
T Consensus 78 ~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~ 134 (166)
T d1we0a1 78 VHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAI 134 (166)
T ss_dssp HHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEE
Confidence 333333322 1356788888889999999984 56889999999999887
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=5.3e-20 Score=147.76 Aligned_cols=111 Identities=22% Similarity=0.473 Sum_probs=100.0
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcce
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
+.|.+.+|+ +++++++||+++|+||++||++|..++|.++++++++.+.+ +.+++|++|.+.+.+++|+++++ +.+
T Consensus 8 f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~~~~-~~~ 84 (137)
T d1st9a_ 8 FVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKSYG-VNF 84 (137)
T ss_dssp CEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHHHTT-CCS
T ss_pred eEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccc--cccccccccchhhhHHHHHHHcC-CCc
Confidence 469999999 99999999999999999999999999999999999998877 99999999989999999999876 345
Q ss_pred ecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 105 PFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 105 ~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
|+..+....+++.|++.++|+++++|++|+++++.
T Consensus 85 ~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~ 119 (137)
T d1st9a_ 85 PVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVV 119 (137)
T ss_dssp CEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEE
T ss_pred cccccccchhhhhhhccccceEEEECCCCEEEEEE
Confidence 55555567899999999999999999999998653
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.79 E-value=2.4e-19 Score=148.82 Aligned_cols=118 Identities=18% Similarity=0.276 Sum_probs=97.8
Q ss_pred hhccCCceE----E-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016404 179 LAIEGRDYV----L-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 179 ~g~~~p~f~----l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
+|+++|+|+ + +.+|++++|++++||+|||+|| ++||++|..+++.|++++++|++ .+++|++|+.|...
T Consensus 5 vG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~---~~~~v~~is~d~~~~~ 81 (167)
T d1e2ya_ 5 LNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAE---INTEVISCSCDSEYSH 81 (167)
T ss_dssp TTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHH
T ss_pred CCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhc---CceEEEeecCCcHHhH
Confidence 699999998 4 7799999999999999999999 99999999999999999999987 89999999998643
Q ss_pred HHHHHhhhcC---CcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016404 251 KEFDLNHSIM---PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
..+....... .-..++...|....+++.|++. .+|++||||++|+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~ 139 (167)
T d1e2ya_ 82 LQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQI 139 (167)
T ss_dssp HHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEE
Confidence 2333222211 1245666777888999999983 46899999999999887
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.76 E-value=9.6e-19 Score=147.66 Aligned_cols=119 Identities=16% Similarity=0.245 Sum_probs=101.0
Q ss_pred hhccCCceE----E-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC--H
Q 016404 179 LAIEGRDYV----L-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--H 250 (390)
Q Consensus 179 ~g~~~p~f~----l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~--~ 250 (390)
.+.+||+|+ + +.+|++++|++++||+|||+|| +.||+.|..+++.|++++++|++ .+++|++|+.|.. .
T Consensus 5 ~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~---~g~~VlgIS~Ds~~s~ 81 (194)
T d1uula_ 5 DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD---IGCEVLACSMDSEYSH 81 (194)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHH
T ss_pred cCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhcc---CceEEEEEecCchhhh
Confidence 367899999 4 6788999999999999999999 99999999999999999999987 8999999999963 3
Q ss_pred HHHHHhhh---cCCcccccCCchHHHHHHHHccc------cccceEEEECCCCcEEeeC
Q 016404 251 KEFDLNHS---IMPWLAIPYEDRARQDLCRIFNI------KGIPALVLIGPDGKTISTN 300 (390)
Q Consensus 251 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v------~~~P~~~lid~~G~v~~~~ 300 (390)
..|.+... ...-+.+|+..|.+..+++.||+ ...|++||||++|+|++..
T Consensus 82 ~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~ 140 (194)
T d1uula_ 82 LAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 140 (194)
T ss_dssp HHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred hhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEE
Confidence 44444332 22346778888999999999998 3578999999999999873
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=1.5e-18 Score=141.81 Aligned_cols=117 Identities=10% Similarity=0.187 Sum_probs=92.9
Q ss_pred hhccCCceEE-eCCCCeeeecccCCc--EEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGK--TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 255 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 255 (390)
+|+++|+|++ +.+|+++++++++|+ +|+++||++|||+|..+++.|.++++++.+ .+++|++|+.|. .....+
T Consensus 4 vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~---~~~~vi~vs~d~-~~~~~~ 79 (153)
T d1xvwa1 4 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN---DDSAALAISVGP-PPTHKI 79 (153)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS---SSEEEEEEESCC-HHHHHH
T ss_pred CcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcc---cccccccccchh-hhHHHH
Confidence 5899999999 999999999999995 444556699999999999999999999976 899999999885 455556
Q ss_pred hhhcCCcccccCC--chHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 256 NHSIMPWLAIPYE--DRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 256 ~~~~~~~~~~~~~--~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
+....++ .++.. .+....+++.||+. ..|+++|||++|+|++.+
T Consensus 80 ~~~~~~~-~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~ 131 (153)
T d1xvwa1 80 WATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE 131 (153)
T ss_dssp HHHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE
T ss_pred Hhhhhcc-ceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEE
Confidence 6554442 23332 23457899999974 346799999999998773
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.2e-19 Score=143.87 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=88.5
Q ss_pred ecCCCc-cccCcc-CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 29 LSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 29 ~~~~g~-~~l~~~-~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
.|.+|+ ++++++ +||+|+|+|||+||++|+.++|.|+++++ .+ +.+++++.+.+......++.+.++...+.
T Consensus 5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~ 78 (136)
T d1z5ye1 5 LDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELGNPYALS 78 (136)
T ss_dssp SSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TT--CCEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred ccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hh--hhhcccccccchhhhHHHHHHcCCcccee
Confidence 355688 998888 89999999999999999999999988754 33 77999999999888888888776555555
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
..+....+...|++.++|+++++|++|+++.+.
T Consensus 79 ~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~ 111 (136)
T d1z5ye1 79 LFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 111 (136)
T ss_dssp EEESSCHHHHHHTCCSBSEEEEECTTSCEEEEE
T ss_pred ecccchhHHHhcccCCcceEEEEcCCCEEEEEE
Confidence 445557899999999999999999999998654
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.76 E-value=1.2e-18 Score=144.50 Aligned_cols=119 Identities=14% Similarity=0.204 Sum_probs=99.7
Q ss_pred HhhccCCceEE-eCCC-----CeeeecccCCc-EEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC
Q 016404 178 LLAIEGRDYVL-SRDH-----RKITVSELAGK-TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 249 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g-----~~~~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~ 249 (390)
++|.+||||++ +.+| +.++|++++|| +|||+|| +.|||.|..+++.+++.+++|++ .+++|++|+.|..
T Consensus 2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~---~g~~Vvgis~d~~ 78 (170)
T d1zofa1 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE---KGFNVIGVSIDSE 78 (170)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH---TTEEEEEEESSCH
T ss_pred CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhcc---CCeeEecccccch
Confidence 57999999999 6666 47999999995 8999999 99999999999999999999987 8999999999874
Q ss_pred H--HHHHHhhhc---CCcccccCCchHHHHHHHHcccc-----ccceEEEECCCCcEEee
Q 016404 250 H--KEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTIST 299 (390)
Q Consensus 250 ~--~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~ 299 (390)
. ..|.+.... .....+|...|....+.+.||+. ..|+++|||++|+|++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~ 138 (170)
T d1zofa1 79 QVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHA 138 (170)
T ss_dssp HHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred hhHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEE
Confidence 3 344444432 22456777788889999999984 57899999999999876
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=5.1e-18 Score=139.01 Aligned_cols=116 Identities=17% Similarity=0.259 Sum_probs=96.6
Q ss_pred cCCceEE----eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--HHHH
Q 016404 182 EGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEFD 254 (390)
Q Consensus 182 ~~p~f~l----~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~~ 254 (390)
+||+|++ +.+|+.++|++++||+|||+|| +.|||.|..+++.+++++++|.+ .+.+|++|+.|... ..|.
T Consensus 2 ~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~---~~~~vigIS~d~~~~~~~~~ 78 (158)
T d1zyea1 2 HAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD---VNCEVVAVSVDSHFSHLAWI 78 (158)
T ss_dssp BCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH---TTEEEEEEESSCHHHHHHHH
T ss_pred CCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhc---CCceEEeccCcCHHHHHHHH
Confidence 6899986 4566799999999999999999 89999999999999999999987 89999999999643 3333
Q ss_pred Hhhh---cCCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEeeC
Q 016404 255 LNHS---IMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~~~---~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 300 (390)
+... ....+.+|...|....+++.||+. +.|+++|||++|+|++..
T Consensus 79 ~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~ 133 (158)
T d1zyea1 79 NTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS 133 (158)
T ss_dssp TSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred hhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEE
Confidence 3322 123567888888889999999985 467899999999999863
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=8.8e-19 Score=143.44 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=96.3
Q ss_pred hhccCCceEE-eCCCCeeeeccc--CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSEL--AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 254 (390)
+|+++|+|++ +.+|+.++|+++ +|++|+++|| ++|||+|..+++.|++.+++|+ .++.+++|+.| +.....
T Consensus 7 vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~----~~~~~~~is~d-~~~~~~ 81 (156)
T d2a4va1 7 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELK----EYAAVFGLSAD-SVTSQK 81 (156)
T ss_dssp TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHT----TTCEEEEEESC-CHHHHH
T ss_pred CCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHh----hccceeeeccc-hhhhHH
Confidence 6999999999 999999999998 4678888888 8999999999999999999997 45678999988 556666
Q ss_pred HhhhcCCcccccCCchHHHHHHHHccccccce-----EEEECCCCcEEeeC
Q 016404 255 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA-----LVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~-----~~lid~~G~v~~~~ 300 (390)
++...++ +.+|+..|.+..++++||+...|. .++|+.+|+++.+.
T Consensus 82 ~f~~~~~-l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~ 131 (156)
T d2a4va1 82 KFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKR 131 (156)
T ss_dssp HHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEE
T ss_pred hhhcccC-ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEE
Confidence 6766655 568888888899999999865553 45555899998873
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.74 E-value=6.5e-18 Score=141.32 Aligned_cols=112 Identities=25% Similarity=0.377 Sum_probs=94.7
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-ChhHHHHHHHhCCCcc
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-DENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-~~~~~~~~~~~~~~~~ 103 (390)
++|.+.+|+ ++|++++||+|||+||++||++|+.+++.++++++++.+.+ +.|++|++|. +.+.+++|+++.++..
T Consensus 39 f~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~ 116 (176)
T d1jfua_ 39 LAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLKEANLTR 116 (176)
T ss_dssp CEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHHHHTTCCT
T ss_pred eEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccc--cccccccccccchhhhhhhHhhhCCcc
Confidence 569999999 99999999999999999999999999999999999998876 8999999985 5667899999877544
Q ss_pred eec--C--hhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 104 VPF--D--ETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 104 ~~~--~--~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
.++ + ......+...|++.++|+++|+|++|+++.+.
T Consensus 117 ~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~ 156 (176)
T d1jfua_ 117 LGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATI 156 (176)
T ss_dssp TCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEE
T ss_pred eeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEE
Confidence 433 2 22334566677899999999999999998654
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.74 E-value=8.8e-19 Score=141.72 Aligned_cols=107 Identities=17% Similarity=0.251 Sum_probs=90.2
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
+.+.++. +++++++||+++|+||++||++|+.++|.+.++++.++ +++++|+.+.+....+++..++.+...+.
T Consensus 16 ~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (144)
T d1knga_ 16 ADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKR-----FQLVGINYKDAADNARRFLGRYGNPFGRV 90 (144)
T ss_dssp ETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT-----SEEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred ccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhccC-----ceeEEEEeeechHHHHHHHHHcCCccccc
Confidence 4444557 99999999999999999999999999999988866542 67999999999888999998877555545
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
..+....+.+.|++.++|+++++|++|+++++.
T Consensus 91 ~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~ 123 (144)
T d1knga_ 91 GVDANGRASIEWGVYGVPETFVVGREGTIVYKL 123 (144)
T ss_dssp EEETTSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred cccccchhhhhcCccccceEEEEcCCCeEEEEE
Confidence 455567899999999999999999999999764
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=5.5e-18 Score=139.84 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=92.1
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+++|+|++ +.+|+.++|++++||++||+|| +.||++|..+++.|++++.++ .++.+++|+.|. .....++
T Consensus 20 vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~-----~~~~vv~Is~d~-~~~~~~~ 93 (164)
T d1qxha_ 20 AGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI-----DNTVVLCISADL-PFAQSRF 93 (164)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS-----TTEEEEEEESSC-HHHHTTC
T ss_pred CCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhh-----ccceeeeEEcCC-HHHHHHH
Confidence 5999999999 9999999999999999999888 779999999999999887765 468999999984 4444445
Q ss_pred hhcCCccccc--CCchHHHHHHHHcccc---------ccceEEEECCCCcEEee
Q 016404 257 HSIMPWLAIP--YEDRARQDLCRIFNIK---------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~--~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~ 299 (390)
...++ ..++ ...+.+..+++.||+. ..|++||||++|+|+++
T Consensus 94 ~~~~~-~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~ 146 (164)
T d1qxha_ 94 CGAEG-LNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFS 146 (164)
T ss_dssp CSSTT-CTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHHhC-CCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEE
Confidence 44443 2233 3345578899999973 24789999999999987
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=2.8e-18 Score=138.51 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=89.8
Q ss_pred CCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-----ChhHHHHHHHhCCCcce
Q 016404 31 RQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----DENGFEEHFKCMPWLAV 104 (390)
Q Consensus 31 ~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~~~ 104 (390)
.+|+ ++++.++||+++|+||++||++|++++|.|+++++++++. +++++|+++. +.+.++++++++++ .+
T Consensus 17 ~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~-~~ 92 (143)
T d2b5xa1 17 LNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKIKETAAEHDI-TQ 92 (143)
T ss_dssp ESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHHHHHHHHTTC-CS
T ss_pred cCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchhhhhhHHHhhcc-Cc
Confidence 3688 9999999999999999999999999999999999999865 7899998853 34467889998874 56
Q ss_pred ecChhHHHHHHHhcCcCCCCeEEEEcCCCcccccc
Q 016404 105 PFDETLHKKLRIRYRVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 105 ~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~~ 139 (390)
|+..+....+++.|++.++|+++++|++|+++++.
T Consensus 93 p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 127 (143)
T d2b5xa1 93 PIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ 127 (143)
T ss_dssp CEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEE
T ss_pred cccccCccchHHHcCCCcCCEEEEECCCCEEEEEE
Confidence 66555567899999999999999999999998654
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.73 E-value=4.3e-18 Score=142.39 Aligned_cols=119 Identities=17% Similarity=0.223 Sum_probs=100.7
Q ss_pred HhhccCCceEE-e-CCC--CeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016404 178 LLAIEGRDYVL-S-RDH--RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 178 l~g~~~p~f~l-~-~~g--~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
++|.++|+|++ . .+| .++++++++||++||+|| +.||+.|..+++.|++.+++|.+ .+++|++||.|...
T Consensus 2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~---~~~~v~gIS~Ds~~sh 78 (186)
T d1n8ja_ 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK---LGVDVYSVSTDTHFTH 78 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH---TTEEEEEEESSCHHHH
T ss_pred CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccc---ccEEEEeccccCHHHH
Confidence 68999999998 3 355 478899999999999999 77888899999999999999987 89999999998732
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
..|.+.......+.+|+..|.+..+++.||+. ..|.++|||++|+|++.
T Consensus 79 ~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~ 133 (186)
T d1n8ja_ 79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 133 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEE
Confidence 45555544444577888899999999999984 46889999999999887
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.72 E-value=1.8e-17 Score=143.28 Aligned_cols=118 Identities=14% Similarity=0.232 Sum_probs=100.0
Q ss_pred HhhccCCceEE-eCCCCeeeeccc---CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC--H
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSEL---AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--H 250 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~---~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~--~ 250 (390)
++|+++|+|++ +.+| ++.+.++ +||++||+|| +.||+.|..+++.|++++++|++ .+++|++||+|.. .
T Consensus 2 lIGd~aPdF~l~t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~---~g~~vigiS~Ds~~sh 77 (237)
T d2zcta1 2 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR---LGVDLIGLSVDSVFSH 77 (237)
T ss_dssp CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHH---TTEEEEEEESSCHHHH
T ss_pred CCCCCCCCeEEEcCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhcc---CCcceeeccCCcHHHH
Confidence 47999999999 7777 4777664 7999999988 99999999999999999999997 8999999999973 3
Q ss_pred HHHHHhhh--cCCcccccCCchHHHHHHHHccc-------cccceEEEECCCCcEEee
Q 016404 251 KEFDLNHS--IMPWLAIPYEDRARQDLCRIFNI-------KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~v-------~~~P~~~lid~~G~v~~~ 299 (390)
..|.+... ....+.+|+..|.+..+++.||+ ...|++||||++|+|++.
T Consensus 78 ~~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~ 135 (237)
T d2zcta1 78 IKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTM 135 (237)
T ss_dssp HHHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEE
T ss_pred HHHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEE
Confidence 55555443 23457788888999999999998 468999999999999876
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.70 E-value=3.6e-17 Score=136.13 Aligned_cols=120 Identities=19% Similarity=0.327 Sum_probs=90.1
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEccCCCc-ccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC---HHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEF 253 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~ 253 (390)
++.++|+|++ +.+|+.+++++++||++||+||.+||+ .|...++.|.++++++.+ .+.++.+++|++|.. .+..
T Consensus 7 ~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~-~~~~v~~v~isiDp~~Dtp~~l 85 (172)
T d1xzoa1 7 LNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA-ENIDVRIISFSVDPENDKPKQL 85 (172)
T ss_dssp CCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH-TTCCCEEEEEESCTTTCCHHHH
T ss_pred CCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhcc-ccccccccccccccccchHHHH
Confidence 5778899999 999999999999999999999999997 599999999999999975 456799999999853 4556
Q ss_pred HHhhhcCCc--ccccCC---ch-H-HHHHHHHcccc-----------ccceEEEECCCCcEEee
Q 016404 254 DLNHSIMPW--LAIPYE---DR-A-RQDLCRIFNIK-----------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 254 ~~~~~~~~~--~~~~~~---~~-~-~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 299 (390)
+++...++. ..+.+. .. . .....+.|++. -.|.++|||++|+|+..
T Consensus 86 ~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~ 149 (172)
T d1xzoa1 86 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 149 (172)
T ss_dssp HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEE
Confidence 666654442 112221 11 1 12233445431 13679999999999876
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=2.9e-17 Score=135.72 Aligned_cols=115 Identities=18% Similarity=0.138 Sum_probs=85.2
Q ss_pred HhhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHH
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 255 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 255 (390)
.+|+++|+|++ +.+|+.++|++++||++||+|| +.|||.|..+++.|++.+++ .+++|++|+.|.. ....+
T Consensus 18 ~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~------~g~~vv~Is~d~~-~~~~~ 90 (166)
T d1xvqa_ 18 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA------SGATVLCVSKDLP-FAQKR 90 (166)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH------TTCEEEEEESSCH-HHHTT
T ss_pred CCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhccc------ccccccccccchH-HHHHH
Confidence 36999999999 9999999999999999999999 55788899998887665443 5679999999853 44444
Q ss_pred hhhcCCcccccCCchHHHHHHHHcccc---------ccceEEEECCCCcEEee
Q 016404 256 NHSIMPWLAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~ 299 (390)
+...+.........+....+.+.|++. ..|++||||++|+|++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~ 143 (166)
T d1xvqa_ 91 FCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYT 143 (166)
T ss_dssp CC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEE
T ss_pred HHHHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEE
Confidence 444444333333344456778888763 24789999999999987
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.68 E-value=9.5e-17 Score=132.18 Aligned_cols=115 Identities=18% Similarity=0.146 Sum_probs=87.5
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--HHHH
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEFD 254 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~~ 254 (390)
+|+++|+|++ +.+|+++++++++||++||.|| +.|||.|..+++.|.+.++++ .++.+++|+.|... .+|.
T Consensus 18 vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~-----~~~~vv~Is~d~~~~~~~~~ 92 (163)
T d1psqa_ 18 VGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-----DNTVVLTVSMDLPFAQKRWC 92 (163)
T ss_dssp TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEESSCHHHHHHHH
T ss_pred CCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhh-----cccceEEEEeccHHHHHHHH
Confidence 5999999999 9999999999999999999998 779999999999888776666 45889999988532 3333
Q ss_pred HhhhcCCcccccCCchHHHHHHHHccccc------cceEEEECCCCcEEeeC
Q 016404 255 LNHSIMPWLAIPYEDRARQDLCRIFNIKG------IPALVLIGPDGKTISTN 300 (390)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~v~~~~ 300 (390)
........ ....++....+.+.||+.. .++++|||++|+|++..
T Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~ 142 (163)
T d1psqa_ 93 GAEGLDNA--IMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE 142 (163)
T ss_dssp HHHTCTTS--EEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred HHcCCcce--eeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEE
Confidence 33322211 1222334567899999742 24689999999999873
|
| >d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: C1-like domain domain: Pdi-like hypothetical protein At1g60420 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.67 E-value=1.6e-17 Score=119.80 Aligned_cols=79 Identities=39% Similarity=0.812 Sum_probs=75.2
Q ss_pred CccCCCCChhhHHHHHHHHHHhcCCCCCccccCCCc-cceeecCCCceeecccCCCCceEEEEcCCCCCCCccccccccC
Q 016404 309 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHE-HELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGIN 387 (390)
Q Consensus 309 g~~~~p~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~-~~l~l~~~~~~iC~~C~e~g~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
|.++||+++.+..++...+.++...+|..+.+..|+ |.|.+.....+.|+.|++.+.+|.|+|..|||+||..||+.++
T Consensus 1 ~~~~~~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA~~P~ 80 (89)
T d1v5na_ 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred CCccCCchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecCCCCEeCCCCCCcCCcEeEeccCCCEecHHHcCCCc
Confidence 678999999999999999999999999999999995 9999998889999999999999999999999999999999764
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.1e-16 Score=133.38 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=100.8
Q ss_pred HhhccCCceEE----eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--
Q 016404 178 LLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 250 (390)
Q Consensus 178 l~g~~~p~f~l----~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 250 (390)
.+|+++|+|++ +.+|+.++|++++||++||+|| +.||+.|..++..|++++++|.+ .+++|++||.|...
T Consensus 6 ~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~---~g~~vigIS~D~~~~~ 82 (197)
T d1qmva_ 6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK---LGCEVLGVSVDSQFTH 82 (197)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHH
T ss_pred cCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhcc---CCcEEEEEecCCHHHH
Confidence 37999999986 4577889999999999999999 99999999999999999999987 89999999999743
Q ss_pred HHHHHhhhc---CCcccccCCchHHHHHHHHcccc------ccceEEEECCCCcEEee
Q 016404 251 KEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 299 (390)
.+|.+.... ..-+.+|+..|..+.+++.||+. .+|++|+||++|+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~ 140 (197)
T d1qmva_ 83 LAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQI 140 (197)
T ss_dssp HHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEE
Confidence 344433321 22467888999999999999984 47889999999999886
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.65 E-value=3.2e-16 Score=128.97 Aligned_cols=115 Identities=11% Similarity=0.090 Sum_probs=91.2
Q ss_pred hhccCCceEE-eCCCCeeeecccCCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHh
Q 016404 179 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 256 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g~~~~l~~~~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 256 (390)
+|+++|+|++ +.+|+.++|++++||++||+|| +.||+.|..+++.|++.+++++ ++.|++|+.|.. ....++
T Consensus 18 vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-----~~~vi~iS~d~~-~~~~~~ 91 (164)
T d1q98a_ 18 VGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-----NTIVLCISADLP-FAQARF 91 (164)
T ss_dssp TTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-----TEEEEEEESSCH-HHHTTC
T ss_pred CCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc-----cceEEeecCCcH-HHHHHH
Confidence 6999999999 9999999999999999999999 4577779999999999999884 479999999853 344555
Q ss_pred hhcCCcccccC-CchHHHHHHHHcccc-------c--cceEEEECCCCcEEee
Q 016404 257 HSIMPWLAIPY-EDRARQDLCRIFNIK-------G--IPALVLIGPDGKTIST 299 (390)
Q Consensus 257 ~~~~~~~~~~~-~~~~~~~l~~~~~v~-------~--~P~~~lid~~G~v~~~ 299 (390)
...++...++. ..+....+.+.|++. + .|++||||++|+|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~ 144 (164)
T d1q98a_ 92 CGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHS 144 (164)
T ss_dssp TTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred HHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEE
Confidence 55544333332 333456788888863 2 3789999999999987
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.2e-16 Score=135.33 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=99.7
Q ss_pred HhhccCCceEE-eCCCCeeeecccCC-cEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC--HHH
Q 016404 178 LLAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKE 252 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g~~~~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~ 252 (390)
++|+++|+|++ +.+|+ ++|++++| |++||+|| +.||+.|..++..|++.+++|++ .+++|++||+|.. ...
T Consensus 2 ~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~---~g~~v~giS~Ds~~sh~~ 77 (220)
T d1prxa_ 2 LLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK---RNVKLIALSIDSVEDHLA 77 (220)
T ss_dssp CTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSCHHHHHH
T ss_pred CCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhc---ccceeeccccccccchhh
Confidence 47999999999 77775 99999987 79999998 78999999999999999999987 8999999999974 345
Q ss_pred HHHhhh------cCCcccccCCchHHHHHHHHcccc------------ccceEEEECCCCcEEee
Q 016404 253 FDLNHS------IMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 253 ~~~~~~------~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 299 (390)
|.+.+. ...-+.+|+..|.+..++++||+. ..+.++|||++|+|++.
T Consensus 78 ~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~ 142 (220)
T d1prxa_ 78 WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS 142 (220)
T ss_dssp HHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred hhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEE
Confidence 554433 122367888889999999999984 45889999999999887
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.64 E-value=2.3e-16 Score=129.96 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=94.7
Q ss_pred hhhccCcce-eec----CCCc-cccCccCCCEEEEEEecC-CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhH
Q 016404 19 VLASEGVEF-LLS----RQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91 (390)
Q Consensus 19 ~~~~~~~~~-l~~----~~g~-~~l~~~~gk~vll~F~a~-~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 91 (390)
+++...+++ |.+ .+++ ++|++++||++||+||.. |||+|..+++.|.+++++|++.+ ++|++||.| +..+
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g--~~vv~IS~D-~~~~ 78 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTD-THFV 78 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESS-CHHH
T ss_pred CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc--eEEEecccc-cHHH
Confidence 445555555 443 4556 999999999999999955 99999999999999999999988 999999998 4545
Q ss_pred HHHHHHhCC---CcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 92 FEEHFKCMP---WLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 92 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
.++|.+++. -+.+|+..+.+.++++.||+. ..|+.++||++|+|++..
T Consensus 79 ~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~ 135 (166)
T d1we0a1 79 HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIE 135 (166)
T ss_dssp HHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEE
Confidence 566666542 256777777778999999984 467899999999997654
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.63 E-value=1.9e-16 Score=130.95 Aligned_cols=109 Identities=23% Similarity=0.202 Sum_probs=89.8
Q ss_pred eecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC-----
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP----- 100 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~----- 100 (390)
|.|.+|+ ++|++++||+++|+|| ++||++|..+++.|.++++++++.+ ++|++|+.|... +..++..+..
T Consensus 18 l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~--~~v~~is~d~~~-~~~~~~~~~~~~~~~ 94 (167)
T d1e2ya_ 18 MPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN--TEVISCSCDSEY-SHLQWTSVDRKKGGL 94 (167)
T ss_dssp CSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCHH-HHHHHHHSCGGGTCC
T ss_pred ccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc--eEEEeecCCcHH-hHHHHHhhHHHhccc
Confidence 7799999 9999999999999999 9999999999999999999999988 999999998543 3444544321
Q ss_pred -CcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 101 -WLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 101 -~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
-..++...+....+++.|++. ..|+.+|||++|+|++..
T Consensus 95 ~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~ 140 (167)
T d1e2ya_ 95 GPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQII 140 (167)
T ss_dssp CCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred ccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEE
Confidence 134555667778999999983 468999999999997654
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.62 E-value=6.3e-16 Score=117.48 Aligned_cols=87 Identities=26% Similarity=0.492 Sum_probs=72.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++|+++|+|||+||++|+.+.|.+.+++++|+ .++.++.|++|.. ..++++|+
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~ 68 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA----DKVTVAKLNVDEN-----------------------PETTSQFG 68 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcC----CceEEEEEECCCC-----------------------cccHHHCC
Confidence 35899999999999999999999999999997 5688888888753 68899999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
|.++||++++ ++|+.+.+ ..|... .++|.+.+++
T Consensus 69 V~~~Pt~~~~-~~G~~~~~-------~~G~~~-------~~~l~~~i~~ 102 (105)
T d1nw2a_ 69 IMSIPTLILF-KGGEPVKQ-------LIGYQP-------KEQLEAQLAD 102 (105)
T ss_dssp CCBSSEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHTTT
T ss_pred cceeeEEEEE-ECCEEEEE-------EECCCC-------HHHHHHHHHH
Confidence 9999999999 68888776 466554 5566665554
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.62 E-value=1.4e-15 Score=125.63 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=94.7
Q ss_pred cCCceEE-e----CCCCeeeecccCC-cEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH--HH
Q 016404 182 EGRDYVL-S----RDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE 252 (390)
Q Consensus 182 ~~p~f~l-~----~~g~~~~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~ 252 (390)
+||+|++ + .++++++|++++| |+|||+|| +.||+.|..+++.|++.+++|++ .+++||+|+.|... ..
T Consensus 1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~---~g~~vigIS~D~~~~~~~ 77 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE---RNVELLGCSVDSKFTHLA 77 (170)
T ss_dssp BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH---TTEEEEEEESSCHHHHHH
T ss_pred CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhc---CCeeEecccCCcHHHHHh
Confidence 4899998 3 4456899999998 89999998 89999999999999999999987 89999999999743 33
Q ss_pred HHHhhh---cCCcccccCCchHHHHHHHHcccc-----ccceEEEECCCCcEEeeC
Q 016404 253 FDLNHS---IMPWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~ 300 (390)
|.+... ...-..+|+..|....+.+.||+. ..+++++||++|+|++..
T Consensus 78 ~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~ 133 (170)
T d2h01a1 78 WKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLL 133 (170)
T ss_dssp HHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred HhhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEE
Confidence 433322 122356777888899999999983 458999999999998873
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.62 E-value=1.2e-15 Score=117.21 Aligned_cols=75 Identities=27% Similarity=0.610 Sum_probs=64.4
Q ss_pred ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
+.+..||+|||+|||+||++|+.+.|.+++++++|+ +.+.++.|..|. ...++
T Consensus 20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~~i~~d~-----------------------~~~l~ 72 (111)
T d1xwaa_ 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA----DNVVVLKVDVDE-----------------------CEDIA 72 (111)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTT-----------------------CHHHH
T ss_pred HHhcCCCEEEEEEECCcccCccccchhHHHHhhhcc----cceEEEEEEeec-----------------------Ccchh
Confidence 344467999999999999999999999999999987 557777777775 36789
Q ss_pred HHccccccceEEEECCCCcEEee
Q 016404 277 RIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
++|+|.++||++++ ++|+++.+
T Consensus 73 ~~~~V~~~Pt~~~~-~~G~~v~~ 94 (111)
T d1xwaa_ 73 MEYNISSMPTFVFL-KNGVKVEE 94 (111)
T ss_dssp HHTTCCSSSEEEEE-ETTEEEEE
T ss_pred hcCCCccccEEEEE-ECCEEEEE
Confidence 99999999999999 78888776
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.61 E-value=2.1e-15 Score=114.94 Aligned_cols=87 Identities=28% Similarity=0.501 Sum_probs=72.4
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+|+|||+|||+||++|+.+.|.+.++.+++. .++.++.|.+|.. ..++++|+|
T Consensus 19 ~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~V 71 (107)
T d1dbya_ 19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK----DKLKCVKLNTDES-----------------------PNVASEYGI 71 (107)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHHTC
T ss_pred CCcEEEEEECCCCCCccccChHHHHHHHhhc----ccceEEEEecccc-----------------------hhHHHHhcc
Confidence 5899999999999999999999999998887 5678888888753 679999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHh
Q 016404 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 330 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 330 (390)
+++||++++ ++|+.+.+ ..|... .++|.+.+++.
T Consensus 72 ~~~Pt~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~i~~~ 105 (107)
T d1dbya_ 72 RSIPTIMVF-KGGKKCET-------IIGAVP-------KATIVQTVEKY 105 (107)
T ss_dssp CSSCEEEEE-SSSSEEEE-------EESCCC-------HHHHHHHHHHH
T ss_pred cceEEEEEE-ECCeEEEE-------EeCCCC-------HHHHHHHHHHh
Confidence 999999999 58888877 466554 55666666653
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=1.1e-15 Score=126.59 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=88.2
Q ss_pred CCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC---Cccee
Q 016404 31 RQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP---WLAVP 105 (390)
Q Consensus 31 ~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~---~~~~~ 105 (390)
..|+ ++|++++||+++|+|| +.|||+|..+++.+.+.++++++.| +++++|+.|.. .+..++...+. .+.+|
T Consensus 32 ~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g--~~vv~is~d~~-~~~~~~~~~~~~~~~~~f~ 108 (169)
T d2bmxa1 32 DYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQILGVSIDSE-FAHFQWRAQHNDLKTLPFP 108 (169)
T ss_dssp GGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HHHHHHHHHCTTGGGCCSC
T ss_pred ccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccC--cceeeccccch-hhhhhhcccccccccceEE
Confidence 3447 9999999999999999 9999999999999999999999988 99999999853 33444554432 35667
Q ss_pred cChhHHHHHHHhcCc-----CCCCeEEEEcCCCcccccc
Q 016404 106 FDETLHKKLRIRYRV-----DRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v-----~~~P~~~~~d~~G~i~~~~ 139 (390)
+..|.+.++++.||+ ...|+.+++|++|+|++..
T Consensus 109 ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~ 147 (169)
T d2bmxa1 109 MLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS 147 (169)
T ss_dssp EEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred EEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEE
Confidence 777788899999998 5789999999999998644
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.6e-15 Score=114.62 Aligned_cols=87 Identities=26% Similarity=0.506 Sum_probs=71.4
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+|||+||++|+.+.|.+.++++++. .++.++.+.+|.. ..++++|+|
T Consensus 20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~v 72 (108)
T d2trxa_ 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYGI 72 (108)
T ss_dssp SSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-----------------------TTHHHHTTC
T ss_pred CCcEEEEEECCCCCCccccCcHHHHHHHHhh----cceeeeeccccch-----------------------hhHHHHhCC
Confidence 5899999999999999999999999998876 6778888877753 578999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHh
Q 016404 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 330 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 330 (390)
.++||++++ ++|+.+.+ ..|... .+.|.+.+++.
T Consensus 73 ~~~PT~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~i~~~ 106 (108)
T d2trxa_ 73 RGIPTLLLF-KNGEVAAT-------KVGALS-------KGQLKEFLDAN 106 (108)
T ss_dssp CSSSEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHHH
T ss_pred CcEEEEEEE-ECCEEEEE-------EeCCCC-------HHHHHHHHHHh
Confidence 999999999 68888876 566654 56666666553
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.6e-14 Score=118.15 Aligned_cols=115 Identities=18% Similarity=0.348 Sum_probs=87.1
Q ss_pred ceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcc-cCCceEEEEEecCCC---HHHHHHhhh
Q 016404 185 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRD---HKEFDLNHS 258 (390)
Q Consensus 185 ~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~-~~~~~~vv~v~~d~~---~~~~~~~~~ 258 (390)
||++ |.+|+++++++++||++||+||++||+. |....+.+.++++++... ....+.++.++.+.+ .........
T Consensus 2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (160)
T d1wp0a1 2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK 81 (160)
T ss_dssp CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence 6888 9999999999999999999999999985 999999999999987652 234566777777643 233444433
Q ss_pred --cCCcccccCCchHHHHHHHHcccccc---------------ceEEEECCCCcEEee
Q 016404 259 --IMPWLAIPYEDRARQDLCRIFNIKGI---------------PALVLIGPDGKTIST 299 (390)
Q Consensus 259 --~~~~~~~~~~~~~~~~l~~~~~v~~~---------------P~~~lid~~G~v~~~ 299 (390)
..+|..+.........+.+.|++... ++++|||++|+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~ 139 (160)
T d1wp0a1 82 EFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 139 (160)
T ss_dssp TTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEE
T ss_pred hcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEE
Confidence 44455555555555677788875433 578999999999987
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.58 E-value=3.9e-16 Score=128.19 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=93.1
Q ss_pred cceeecCCCc-cccCcc--CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEFLLSRQGK-VPLSSC--GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~--~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.++|.+.+|+ ++|+++ +||+++|.|| ++|||+|..+++.++++++++++.+ +.+++|+.| +.+..+++..+..
T Consensus 10 dF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~~~~~~~~ 86 (160)
T d2cx4a1 10 DFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVD-SPWCLKKFKDENR 86 (160)
T ss_dssp CCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC--CEEEEEESS-CHHHHHHHHHHHT
T ss_pred CeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc--ccccccccc-chhhhhhhcccce
Confidence 3559999999 999997 7999999998 9999999999999999999998887 889999987 5556777777654
Q ss_pred CcceecChhHHHHHHHhcCcC----------CCCeEEEEcCCCccccccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVD----------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~----------~~P~~~~~d~~G~i~~~~~ 140 (390)
+.+++..+....+++.||+. ..|+++++|++|+|++...
T Consensus 87 -~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~ 135 (160)
T d2cx4a1 87 -LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWV 135 (160)
T ss_dssp -CSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEE
T ss_pred -eeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEE
Confidence 34455555567899999873 5789999999999987654
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.58 E-value=4.5e-15 Score=113.26 Aligned_cols=86 Identities=21% Similarity=0.451 Sum_probs=70.9
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+|||+||++|+.+.|.+.+++++++ +.+.++.|.+|. +..++++|+|
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~d~-----------------------~~~l~~~~~I 72 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYS----DRLKVVKLEIDP-----------------------NPTTVKKYKV 72 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEESTT-----------------------CHHHHHHTTC
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcC----Ccceeceecccc-----------------------cHHHHHHhcc
Confidence 4789999999999999999999999999987 567888888875 3689999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
+++||++++ ++|+++.+ ..|..+ .++|.+.+++
T Consensus 73 ~~~Pt~~~~-~~g~~v~~-------~~G~~~-------~~~l~~~i~~ 105 (108)
T d1thxa_ 73 EGVPALRLV-KGEQILDS-------TEGVIS-------KDKLLSFLDT 105 (108)
T ss_dssp CSSSEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHH
T ss_pred cCCCEEEEE-ECCEEEEE-------EeCCCC-------HHHHHHHHHH
Confidence 999999999 47888776 456554 5566666654
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.58 E-value=4.3e-15 Score=112.57 Aligned_cols=86 Identities=22% Similarity=0.476 Sum_probs=70.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+|||+||++|+.+.|.+.++.+++. ..+.++.|..|. +..++++|+|
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~----~~~~~~~v~~d~-----------------------~~~l~~~~~V 69 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYS----GKIAVYKLNTDE-----------------------APGIATQYNI 69 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhc----CccceeEEeccc-----------------------chhhhhhcce
Confidence 4789999999999999999999999999987 456777787775 3689999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
+++||++++ ++|+.+.+ ..|... .+.|.+.+++
T Consensus 70 ~~~Pt~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~i~~ 102 (104)
T d1fb6a_ 70 RSIPTVLFF-KNGERKES-------IIGAVP-------KSTLTDSIEK 102 (104)
T ss_dssp CSSSEEEEE-ETTEEEEE-------EEECCC-------HHHHHHHHHH
T ss_pred eeeeEEEEE-EcCeEEEE-------EeCCCC-------HHHHHHHHHH
Confidence 999999999 68888876 566554 5556555554
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.58 E-value=1.5e-15 Score=127.89 Aligned_cols=109 Identities=22% Similarity=0.207 Sum_probs=92.4
Q ss_pred eecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC-----
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP----- 100 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~----- 100 (390)
|.|.+|+ ++|++++||++||+|| +.||+.|..+++.+.++++++++.+ ++|++|+.|. ..+.++|.+.+.
T Consensus 18 l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g--~~VlgIS~Ds-~~s~~~~~~~~~~~~~~ 94 (194)
T d1uula_ 18 MPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDS-EYSHLAWTSIERKRGGL 94 (194)
T ss_dssp CTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHHHHHHHSCGGGTCC
T ss_pred ccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc--eEEEEEecCc-hhhhhhhhhhhhhhccc
Confidence 6688899 9999999999999999 9999999999999999999999888 9999999994 334456655432
Q ss_pred -CcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 101 -WLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 101 -~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
-+.+|+..|...++++.||+. ..|+.++||++|+|++..
T Consensus 95 ~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~ 140 (194)
T d1uula_ 95 GQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 140 (194)
T ss_dssp CSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred cCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEE
Confidence 356677788889999999983 478899999999998644
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.57 E-value=3.6e-15 Score=121.78 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=91.7
Q ss_pred eecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC------
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM------ 99 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~------ 99 (390)
+.+.+|+ ++|++++||+++|+|| +.|||+|..+++.+.++++++.+.+ .+|++|+.|. ..+.++|....
T Consensus 11 ~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~--~~vigIS~d~-~~~~~~~~~~~~~~~~~ 87 (158)
T d1zyea1 11 VVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDS-HFSHLAWINTPRKNGGL 87 (158)
T ss_dssp ECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHHHHHHTSCGGGTCC
T ss_pred eeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC--ceEEeccCcC-HHHHHHHHhhhHhhccc
Confidence 4577888 9999999999999999 9999999999999999999999988 9999999994 44456676643
Q ss_pred CCcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 100 PWLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
..+.+|+..|....+++.||+. +.|+.+++|++|+|++..
T Consensus 88 ~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~ 133 (158)
T d1zyea1 88 GHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS 133 (158)
T ss_dssp CSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred cccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEE
Confidence 3456777777778999999985 456899999999998654
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=2.7e-15 Score=116.31 Aligned_cols=82 Identities=18% Similarity=0.346 Sum_probs=60.0
Q ss_pred ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
+++.+||+|+|+|||+||++|+.+.|.+....+..+. ..++.++.+.++.+. +....++
T Consensus 17 l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~-------------------~~~~~l~ 75 (117)
T d2fwha1 17 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKA--LADTVLLQANVTAND-------------------AQDVALL 75 (117)
T ss_dssp HHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHH--TTTSEEEEEECTTCC-------------------HHHHHHH
T ss_pred HHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHh--ccceEEEecccccch-------------------hHHHHHH
Confidence 3445789999999999999999999987433332221 134555555554332 2357899
Q ss_pred HHccccccceEEEECCCCcEEee
Q 016404 277 RIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 277 ~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+.|+|.++||++++|++|+++..
T Consensus 76 ~~~~v~~~Pt~~~~~~~G~~~~~ 98 (117)
T d2fwha1 76 KHLNVLGLPTILFFDGQGQEHPQ 98 (117)
T ss_dssp HHTTCCSSSEEEEECTTSCBCGG
T ss_pred hhhehhhceEEEEEeCCCcEEec
Confidence 99999999999999999998754
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.1e-15 Score=112.84 Aligned_cols=69 Identities=20% Similarity=0.464 Sum_probs=58.9
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+|+|+|+|||+||++|+.+.|.|.++.+.+++ +.++.|..|. ...++++|+|
T Consensus 20 ~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-----~~~~~vd~d~-----------------------~~~~~~~~~V 71 (105)
T d2ifqa1 20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD-----------------------CQDVASECEV 71 (105)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-----SEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred CCEEEEEEEcCCccchhhhhhhhhhhcccccc-----ceeeeccccc-----------------------CHhHHHHcCc
Confidence 48999999999999999999999999988853 4556666554 4678999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
+++||++++ ++|+.+.+
T Consensus 72 ~~~Pt~~~~-~~G~~v~~ 88 (105)
T d2ifqa1 72 KCMPTFQFF-KKGQKVGE 88 (105)
T ss_dssp CBSSEEEEE-ETTEEEEE
T ss_pred eEEEEEEEE-ECCEEEEE
Confidence 999999999 78888877
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.55 E-value=8.3e-15 Score=112.80 Aligned_cols=69 Identities=22% Similarity=0.513 Sum_probs=59.3
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
++++||+|||+||++|+.+.|.|.++.+.|+ ++.++.|..|. +..++++|+|
T Consensus 28 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-----~~~~~~vd~~~-----------------------~~~l~~~~~V 79 (114)
T d1xfla_ 28 KTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDTDE-----------------------LKSVASDWAI 79 (114)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTT-----------------------SHHHHHHTTC
T ss_pred CCeEEEEEEcCCCCCccccccchhhhccccc-----ccceeEEEeee-----------------------ceeeccccce
Confidence 5899999999999999999999999998885 35566666554 4788999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
+++||++++ ++|+++.+
T Consensus 80 ~~~Pt~~~~-~~G~~v~~ 96 (114)
T d1xfla_ 80 QAMPTFMFL-KEGKILDK 96 (114)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred eeeEEEEEE-ECCEEEEE
Confidence 999999999 78888877
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.55 E-value=1.7e-14 Score=109.80 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=67.9
Q ss_pred cCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 200 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 200 ~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
..++++|+.||++||++|+.+.|.+.+++..........+.++.|..+. ...++++|
T Consensus 13 ~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~-----------------------~~~l~~~~ 69 (107)
T d1a8la2 13 IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-----------------------YPEWADQY 69 (107)
T ss_dssp CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-----------------------CHHHHHHT
T ss_pred cCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc-----------------------cccccccc
Confidence 3446678889999999999999999999876443233556666666553 36899999
Q ss_pred cccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 280 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
+|.++||++++ ++|+.+.+ ..|..+ .+++.+.+.+
T Consensus 70 ~V~~vPTi~i~-~~G~~~~~-------~~G~~~-------~~~~~~~i~~ 104 (107)
T d1a8la2 70 NVMAVPKIVIQ-VNGEDRVE-------FEGAYP-------EKMFLEKLLS 104 (107)
T ss_dssp TCCSSCEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHH
T ss_pred ccccceEEEEE-eCCeEEEE-------EECCCC-------HHHHHHHHHH
Confidence 99999997665 78888776 567665 5555555554
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.55 E-value=1e-14 Score=111.81 Aligned_cols=87 Identities=22% Similarity=0.395 Sum_probs=70.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+|+|+|+||++||++|+.+.|.+.+++++++ .++.++.|++|. +..++++|+
T Consensus 23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~d~-----------------------~~~l~~~~~ 75 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYA----GKVIFLKVDVDA-----------------------VAAVAEAAG 75 (112)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTT-----------------------THHHHHHHT
T ss_pred cCCeEEEEEEcCCcCCCcccchhhhhhhhccc----ceEEEEEeeccc-----------------------ccccccccc
Confidence 35899999999999999999999999999986 457788887775 368999999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHh
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 330 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 330 (390)
|+++||++++ ++|+.+.+ ..|.. .++|.+.+++.
T Consensus 76 v~~~Pt~~~~-~~G~~v~~-------~~G~~--------~~~l~~~i~k~ 109 (112)
T d1ep7a_ 76 ITAMPTFHVY-KDGVKADD-------LVGAS--------QDKLKALVAKH 109 (112)
T ss_dssp CCBSSEEEEE-ETTEEEEE-------EESCC--------HHHHHHHHHHH
T ss_pred ccCCCEEEEE-ECCEEEEE-------EeCcC--------HHHHHHHHHHH
Confidence 9999999999 68888776 45532 45566666554
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.55 E-value=1.4e-14 Score=123.51 Aligned_cols=118 Identities=14% Similarity=0.184 Sum_probs=97.8
Q ss_pred hhccCCceEE-eCCC-Ceeeeccc-CCcEEEEEEc-cCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCC--HHH
Q 016404 179 LAIEGRDYVL-SRDH-RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKE 252 (390)
Q Consensus 179 ~g~~~p~f~l-~~~g-~~~~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~ 252 (390)
+|+++|+|++ +.++ ..++++++ +||++||+|| +.|||.|..++..+++.+++|.+ .+++|++||.|.. +..
T Consensus 4 iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~---~~~~vigiS~Ds~~sh~~ 80 (219)
T d1xcca_ 4 LGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK---LNCKLIGFSCNSKESHDK 80 (219)
T ss_dssp TTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHHHH
T ss_pred CCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcc---cceEEEeecCccHhHHhH
Confidence 6999999999 4433 36999996 7899999999 89999999999999999999987 8999999999974 345
Q ss_pred HHHhhh---cCCcccccCCchHHHHHHHHcccc------------ccceEEEECCCCcEEee
Q 016404 253 FDLNHS---IMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 253 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 299 (390)
|.+... ...-+.+|+..|.+..+++.||+. ...++||||++|+|++.
T Consensus 81 w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~ 142 (219)
T d1xcca_ 81 WIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKAT 142 (219)
T ss_dssp HHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEE
T ss_pred HhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEE
Confidence 554443 333467888889999999999982 24689999999999876
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.55 E-value=3.5e-15 Score=114.42 Aligned_cols=76 Identities=32% Similarity=0.703 Sum_probs=62.9
Q ss_pred ccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH
Q 016404 36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 36 ~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
.+.+..||+|+|+||++||++|+.+.|.++++++++++. +.++.|++| +. ..++
T Consensus 19 ~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d--~~---------------------~~l~ 72 (111)
T d1xwaa_ 19 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVD--EC---------------------EDIA 72 (111)
T ss_dssp HHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETT--TC---------------------HHHH
T ss_pred HHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEee--cC---------------------cchh
Confidence 355567999999999999999999999999999999865 555555554 32 5788
Q ss_pred HhcCcCCCCeEEEEcCCCccccc
Q 016404 116 IRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 116 ~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
++|+|+++||++++. +|+.+.+
T Consensus 73 ~~~~V~~~Pt~~~~~-~G~~v~~ 94 (111)
T d1xwaa_ 73 MEYNISSMPTFVFLK-NGVKVEE 94 (111)
T ss_dssp HHTTCCSSSEEEEEE-TTEEEEE
T ss_pred hcCCCccccEEEEEE-CCEEEEE
Confidence 999999999999995 8887653
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.2e-14 Score=110.35 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=60.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+|+++|+|||+||++|+.+.|.|.+++++++ ++.++.|.+|. +..+++.|+
T Consensus 20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-----~~~f~~vd~d~-----------------------~~~l~~~~~ 71 (107)
T d1gh2a_ 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----QAVFLEVDVHQ-----------------------CQGTAATNN 71 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTT-----------------------SHHHHHHTT
T ss_pred CCCEEEEEEECCCCCCccccchhhhccccccc-----ccccccccccc-----------------------chhhhhhcC
Confidence 35889999999999999999999999999885 35666666664 478899999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|.++||++++ ++|+.+.+
T Consensus 72 v~~~Pt~~~~-~~G~~v~~ 89 (107)
T d1gh2a_ 72 ISATPTFQFF-RNKVRIDQ 89 (107)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred ceeceEEEEE-ECCEEEEE
Confidence 9999999999 78888776
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=5.7e-15 Score=120.17 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=87.9
Q ss_pred cceeecCCCc-cccCccCCC-EEEEE-EecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC
Q 016404 25 VEFLLSRQGK-VPLSSCGGK-TICLF-FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk-~vll~-F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 101 (390)
.++|.+.+|+ ++|++++|| +++|. |+++|||+|..+++.|.++++++++.+ ++|++|+.| +....++|.++.++
T Consensus 10 dF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~--~~vi~vs~d-~~~~~~~~~~~~~~ 86 (153)
T d1xvwa1 10 DFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVG-PPPTHKIWATQSGF 86 (153)
T ss_dssp CCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESC-CHHHHHHHHHHHTC
T ss_pred CeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccc--cccccccch-hhhHHHHHhhhhcc
Confidence 3559999999 999999995 55554 459999999999999999999998877 999999987 45677888886663
Q ss_pred cceec--ChhHHHHHHHhcCcC------CCCeEEEEcCCCcccccc
Q 016404 102 LAVPF--DETLHKKLRIRYRVD------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 102 ~~~~~--~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~~ 139 (390)
.+++ +.+....+++.||+. ..|+.+++|++|+|++..
T Consensus 87 -~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~ 131 (153)
T d1xvwa1 87 -TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE 131 (153)
T ss_dssp -CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE
T ss_pred -ceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEE
Confidence 2333 444567899999974 346899999999997644
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.2e-14 Score=116.06 Aligned_cols=73 Identities=12% Similarity=0.045 Sum_probs=63.2
Q ss_pred CCceEE-eCC-CCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC-------CHHHH
Q 016404 183 GRDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEF 253 (390)
Q Consensus 183 ~p~f~l-~~~-g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~ 253 (390)
.-||++ +++ |+.++|++++||+|||.+||+||++|.+..+.|++++++|++ .+++|+++.++. +.+++
T Consensus 3 iydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~---~g~~Il~fP~nqF~~qE~~~~~ei 79 (184)
T d2f8aa1 3 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP---RGLVVLGFPCNQFGHQENAKNEEI 79 (184)
T ss_dssp GGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTTTCSCHHHH
T ss_pred eeeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcc---cceeEEEeeccccccccccchhhh
Confidence 347888 875 788999999999999999999999999999999999999987 889999999864 33566
Q ss_pred HHhhh
Q 016404 254 DLNHS 258 (390)
Q Consensus 254 ~~~~~ 258 (390)
.++++
T Consensus 80 ~~f~~ 84 (184)
T d2f8aa1 80 LNSLK 84 (184)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 66654
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.53 E-value=1e-14 Score=112.11 Aligned_cols=70 Identities=24% Similarity=0.603 Sum_probs=60.3
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.+|+|||+|||+||++|+.+.|.|.++.+++. ++.++.|.+|. ...++++|+
T Consensus 25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----~~~~~~vd~d~-----------------------~~~l~~~~~ 76 (113)
T d1ti3a_ 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDE-----------------------LKAVAEEWN 76 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTT-----------------------CHHHHHHHH
T ss_pred CCCEEEEEEEcCccccchhhhhhhhhhhccCC-----CceEEeeeeec-----------------------cccccccCe
Confidence 35899999999999999999999999998874 35677776664 367999999
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
|+++||++++ ++|+.+.+
T Consensus 77 I~~~Pt~~~~-k~G~~v~~ 94 (113)
T d1ti3a_ 77 VEAMPTFIFL-KDGKLVDK 94 (113)
T ss_dssp CSSTTEEEEE-ETTEEEEE
T ss_pred ecccceEEEE-ECCEEEEE
Confidence 9999999999 68888877
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.53 E-value=1.4e-14 Score=110.95 Aligned_cols=70 Identities=14% Similarity=0.438 Sum_probs=60.3
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|+||++||++|+.+.|.|.++.++|+ ++.++.|..|.+ +..+++.|+|
T Consensus 25 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-----~v~~~~vd~~~~----------------------~~~l~~~~~V 77 (112)
T d1f9ma_ 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----DVIFLKLDCNQE----------------------NKTLAKELGI 77 (112)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSST----------------------THHHHHHHCC
T ss_pred CCEEEEEEEcCCCcchHHHHHHHhhhccccc-----cceeeccccccc----------------------chhhHhheee
Confidence 4899999999999999999999999999985 356666666543 4789999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
+++||++++ ++|+++.+
T Consensus 78 ~~~Pt~~~~-k~G~~v~~ 94 (112)
T d1f9ma_ 78 RVVPTFKIL-KENSVVGE 94 (112)
T ss_dssp SSSSEEEEE-ETTEEEEE
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 78998877
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.52 E-value=1.7e-14 Score=110.67 Aligned_cols=69 Identities=17% Similarity=0.470 Sum_probs=60.6
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+|||+||++|+.+.|.|.+++++++ ++.++.|++|. +..+++.|+|
T Consensus 26 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----~v~~~~vd~d~-----------------------~~~l~~~~~V 77 (113)
T d1r26a_ 26 DILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----TVKFAKVDADN-----------------------NSEIVSKCRV 77 (113)
T ss_dssp SSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----TSEEEEEETTT-----------------------CHHHHHHTTC
T ss_pred CCeEEEEEECCCCccchhhceeccccccccc-----ccccccccccc-----------------------chhhHHHccc
Confidence 4789999999999999999999999999884 47788777775 3679999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++ ++|+.+.+
T Consensus 78 ~~~Pt~~~~-~~G~~v~~ 94 (113)
T d1r26a_ 78 LQLPTFIIA-RSGKMLGH 94 (113)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred cCCCEEEEE-ECCEEEEE
Confidence 999999999 78888876
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=9.4e-15 Score=120.08 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=87.5
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC-
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW- 101 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~- 101 (390)
.++|.+.+|+ ++|++++||+++|.|| +.|||+|..+++.|.+++.+++ + +++++|+.| +....+++.+.+..
T Consensus 26 dF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~--~~vv~Is~d-~~~~~~~~~~~~~~~ 100 (164)
T d1qxha_ 26 TFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--N--TVVLCISAD-LPFAQSRFCGAEGLN 100 (164)
T ss_dssp CCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--T--EEEEEEESS-CHHHHTTCCSSTTCT
T ss_pred CeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--c--ceeeeEEcC-CHHHHHHHHHHhCCC
Confidence 4559999999 9999999999999998 7799999999999999887664 2 889999998 44455666665542
Q ss_pred cceecChhHHHHHHHhcCcC---------CCCeEEEEcCCCcccccccc
Q 016404 102 LAVPFDETLHKKLRIRYRVD---------RIPSLIPLASDGTLIEEDLI 141 (390)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~v~---------~~P~~~~~d~~G~i~~~~~~ 141 (390)
..+..+.+....+++.||+. ..|++++||++|+|++....
T Consensus 101 ~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~ 149 (164)
T d1qxha_ 101 NVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLV 149 (164)
T ss_dssp TEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred cceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEc
Confidence 22233455568899999973 24789999999999876543
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.51 E-value=1.3e-14 Score=119.87 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=91.6
Q ss_pred hccCcce-eecCCC-----c-cccCccCCC-EEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhH
Q 016404 21 ASEGVEF-LLSRQG-----K-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91 (390)
Q Consensus 21 ~~~~~~~-l~~~~g-----~-~~l~~~~gk-~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 91 (390)
+..+++| |.+.+| + ++|+++.|| +++|+|| +.|||.|..+++.+++.++++++.+ ++|++|+.|... +
T Consensus 4 G~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~Vvgis~d~~~-~ 80 (170)
T d1zofa1 4 TKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDSEQ-V 80 (170)
T ss_dssp TSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSCHH-H
T ss_pred CCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC--eeEecccccchh-h
Confidence 4445544 776666 5 899999986 8999999 9999999999999999999999988 999999998543 3
Q ss_pred HHHHHHhC------CCcceecChhHHHHHHHhcCcC-----CCCeEEEEcCCCcccccc
Q 016404 92 FEEHFKCM------PWLAVPFDETLHKKLRIRYRVD-----RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 92 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~~~d~~G~i~~~~ 139 (390)
.++|.+.. ..+.+|...+....+++.||+. ..|+.++||++|+|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~ 139 (170)
T d1zofa1 81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV 139 (170)
T ss_dssp HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred HHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEEE
Confidence 34444432 2345566667778999999984 578999999999997643
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.50 E-value=6.1e-14 Score=105.82 Aligned_cols=69 Identities=20% Similarity=0.437 Sum_probs=59.3
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.+.++.++|++ ..++.+..|. ..+++++|+|
T Consensus 18 ~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-----~~~~~vd~d~-----------------------~~~~~~~~~V 69 (103)
T d1syra_ 18 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-----MVFIKVDVDE-----------------------VSEVTEKENI 69 (103)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-----SEEEEEETTT-----------------------THHHHHHTTC
T ss_pred CCcEEEEEeCCcccCcccccccchhhhhcccc-----eEEEeecccc-----------------------Ccceeeeeee
Confidence 47899999999999999999999999999853 4566666664 4678999999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++ ++|+.+.+
T Consensus 70 ~~~Pt~i~~-k~G~~v~~ 86 (103)
T d1syra_ 70 TSMPTFKVY-KNGSSVDT 86 (103)
T ss_dssp CSSSEEEEE-ETTEEEEE
T ss_pred ecceEEEEE-ECCEEEEE
Confidence 999999999 68888776
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.49 E-value=1.6e-14 Score=120.32 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=94.1
Q ss_pred hhhccCcce-e---ecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHH
Q 016404 19 VLASEGVEF-L---LSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF 92 (390)
Q Consensus 19 ~~~~~~~~~-l---~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 92 (390)
+++...++| + .+.+.. ++|++++||+++|+|| +.||+.|..+++.|++.++++++.+ ++|++||.|. ..+.
T Consensus 2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~--~~v~gIS~Ds-~~sh 78 (186)
T d1n8ja_ 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDT-HFTH 78 (186)
T ss_dssp CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHH
T ss_pred CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc--EEEEeccccC-HHHH
Confidence 445555555 2 333334 8999999999999999 8889999999999999999999887 9999999984 4555
Q ss_pred HHHHHhCC---CcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccc
Q 016404 93 EEHFKCMP---WLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 93 ~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~ 138 (390)
++|.++.. .+.+|+..+.+..++++||+. ..|+.+++|++|+|.+.
T Consensus 79 ~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~ 133 (186)
T d1n8ja_ 79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 133 (186)
T ss_dssp HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEE
Confidence 66666543 466777888889999999984 46889999999998754
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.49 E-value=1.1e-13 Score=114.64 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=87.3
Q ss_pred CcceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---ChhHHHHHHHh
Q 016404 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEEHFKC 98 (390)
Q Consensus 24 ~~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~-~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~ 98 (390)
..++|.+.+|+ +++++++||++||+||.+||+ .|...++.|.++++++++.+.++.+++|++|. +.+..++|.+.
T Consensus 12 p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~ 91 (172)
T d1xzoa1 12 EPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAAN 91 (172)
T ss_dssp CCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTT
T ss_pred CCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHHHHH
Confidence 35679999999 999999999999999999997 79999999999999998877789999999984 34567888886
Q ss_pred CCC--cceec----ChhHHHH-HHHhcCc-----------CCCCeEEEEcCCCcccc
Q 016404 99 MPW--LAVPF----DETLHKK-LRIRYRV-----------DRIPSLIPLASDGTLIE 137 (390)
Q Consensus 99 ~~~--~~~~~----~~~~~~~-l~~~~~v-----------~~~P~~~~~d~~G~i~~ 137 (390)
++. ..+.+ ....... ..+.|++ .+.|.++|+|++|+++.
T Consensus 92 ~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~ 148 (172)
T d1xzoa1 92 YPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLK 148 (172)
T ss_dssp SCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEE
T ss_pred hccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEE
Confidence 652 12222 1122222 3344443 23478999999999874
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.49 E-value=2.2e-14 Score=108.72 Aligned_cols=71 Identities=24% Similarity=0.571 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+|+++|+|||+||++|+.+.|.+.+++++++++ +.++.|++|.. ..++++|+|
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~V 69 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN-----------------------PETTSQFGI 69 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCC-----------------------cccHHHCCc
Confidence 4789999999999999999999999999999875 56666665533 588999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||++++. +|+.+.+
T Consensus 70 ~~~Pt~~~~~-~G~~~~~ 86 (105)
T d1nw2a_ 70 MSIPTLILFK-GGEPVKQ 86 (105)
T ss_dssp CBSSEEEEEE-TTEEEEE
T ss_pred ceeeEEEEEE-CCEEEEE
Confidence 9999999995 8887754
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.49 E-value=4e-14 Score=107.70 Aligned_cols=71 Identities=20% Similarity=0.519 Sum_probs=61.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+|+|+|+|||+||++|+.+.|.+.++.+++..+ +.++.|++|.. ..++++|+|
T Consensus 18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~-----------------------~~l~~~~~V 71 (107)
T d1dbya_ 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES-----------------------PNVASEYGI 71 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHHTC
T ss_pred CCCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccc-----------------------hhHHHHhcc
Confidence 4789999999999999999999999999988765 56777766633 579999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||+++++ +|+.+.+
T Consensus 72 ~~~Pt~~~~~-~G~~v~~ 88 (107)
T d1dbya_ 72 RSIPTIMVFK-GGKKCET 88 (107)
T ss_dssp CSSCEEEEES-SSSEEEE
T ss_pred cceEEEEEEE-CCeEEEE
Confidence 9999999996 8887754
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.6e-14 Score=108.96 Aligned_cols=84 Identities=23% Similarity=0.478 Sum_probs=64.5
Q ss_pred eecCCCc-cccCc-cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 28 LLSRQGK-VPLSS-CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 28 l~~~~g~-~~l~~-~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
++.++.+ +.-.- -.+++|+|+|||+||++|+.+.|.+.++++++..+ +.++.+++|.+
T Consensus 4 v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~vd~d~~----------------- 63 (108)
T d2trxa_ 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN----------------- 63 (108)
T ss_dssp EEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC-----------------
T ss_pred ceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcc---eeeeeccccch-----------------
Confidence 4444445 43221 24789999999999999999999999999887665 66666665533
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCccccc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
..++++|++.++||++++. +|+.+.+
T Consensus 64 ------~~l~~~~~v~~~PT~~~~~-~G~~v~~ 89 (108)
T d2trxa_ 64 ------PGTAPKYGIRGIPTLLLFK-NGEVAAT 89 (108)
T ss_dssp ------TTHHHHTTCCSSSEEEEEE-TTEEEEE
T ss_pred ------hhHHHHhCCCcEEEEEEEE-CCEEEEE
Confidence 4788999999999999995 8887754
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.48 E-value=4.7e-14 Score=121.61 Aligned_cols=117 Identities=16% Similarity=0.248 Sum_probs=93.5
Q ss_pred hhccCcce-eecCCCccccCcc---CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh--hHH
Q 016404 20 LASEGVEF-LLSRQGKVPLSSC---GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGF 92 (390)
Q Consensus 20 ~~~~~~~~-l~~~~g~~~l~~~---~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~--~~~ 92 (390)
++..++++ +.+.+|++.+++. +||+++|+|| +.|||.|..+++.|.+++++|++.| ++|++||+|... ..|
T Consensus 3 IGd~aPdF~l~t~~G~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g--~~vigiS~Ds~~sh~~w 80 (237)
T d2zcta1 3 IGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVFSHIKW 80 (237)
T ss_dssp TTSBCCCEEEEETTEEEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHHHH
T ss_pred CCCCCCCeEEEcCCCCEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC--cceeeccCCcHHHHHHH
Confidence 34444555 7888888666664 7999999999 9999999999999999999999988 999999999633 344
Q ss_pred HHHHHh--CCCcceecChhHHHHHHHhcCc-------CCCCeEEEEcCCCccccc
Q 016404 93 EEHFKC--MPWLAVPFDETLHKKLRIRYRV-------DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 93 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~v-------~~~P~~~~~d~~G~i~~~ 138 (390)
.+..+. ...+.+|+..|...++++.||+ ...|+++|||++|+|...
T Consensus 81 ~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~ 135 (237)
T d2zcta1 81 KEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTM 135 (237)
T ss_dssp HHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEE
T ss_pred hhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEE
Confidence 444442 2346777777888999999998 467999999999998754
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.3e-14 Score=114.08 Aligned_cols=90 Identities=14% Similarity=0.213 Sum_probs=72.5
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++|+|.|||+|||+|+.+.|.|.++.++|++ ..+.+..|.+|. +.++++.|+|
T Consensus 36 ~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~---~~~~~a~Vd~d~-----------------------~~~la~~~~V 89 (132)
T d2hfda1 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPD---YTWQVAIADLEQ-----------------------SEAIGDRFGV 89 (132)
T ss_dssp EEEEEECSCCSCCSSSSCCTHHHHHHHTTCTT---SCEEEEEECHHH-----------------------HHHHHHHHTC
T ss_pred CcEEEEEeeCCCChhHHHHHHHHHHHHHHccC---CcceeEEEEecC-----------------------CHHHHHhhcc
Confidence 37899999999999999999999999999975 445666665553 5799999999
Q ss_pred cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcC
Q 016404 282 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 332 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 332 (390)
.++||++++ ++|+.+.+ ..|... .++|.+.+++...
T Consensus 90 ~~~PT~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~i~~ll~ 125 (132)
T d2hfda1 90 FRFPATLVF-TGGNYRGV-------LNGIHP-------WAELINLMRGLVE 125 (132)
T ss_dssp CSCCEEEEE-ETTEEEEE-------ECCCSC-------HHHHHHHHHHHHS
T ss_pred CcceeEEEE-EcCcEeee-------ecCCCC-------HHHHHHHHHHHhC
Confidence 999999999 78888776 567666 6666666666544
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=2.4e-14 Score=116.56 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=89.7
Q ss_pred cceeecCCCc-cccCcc--CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 25 VEFLLSRQGK-VPLSSC--GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~--~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
.++|.+.+|+ ++|+++ +|++|+++|| +.|||+|..+++.|.+.+++|++. +.+++|+.| +.+..++|.++++
T Consensus 13 ~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d-~~~~~~~f~~~~~ 88 (156)
T d2a4va1 13 DLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSAD-SVTSQKKFQSKQN 88 (156)
T ss_dssp SCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESC-CHHHHHHHHHHHT
T ss_pred CeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccc-hhhhHHhhhcccC
Confidence 3559999999 999998 5678888888 899999999999999999999765 568999987 6677889999877
Q ss_pred CcceecChhHHHHHHHhcCcCCCCe-----EEEEcCCCcccccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVDRIPS-----LIPLASDGTLIEED 139 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~~~P~-----~~~~d~~G~i~~~~ 139 (390)
+.+|+..|.+.++++.||+...|. .++++.+|+++.+.
T Consensus 89 -l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~ 131 (156)
T d2a4va1 89 -LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKR 131 (156)
T ss_dssp -CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEE
T ss_pred -ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEE
Confidence 567777777889999999876552 33344688887654
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.47 E-value=2e-14 Score=111.19 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=63.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
..++|+|.||++|||+|+.+.|.|.++.++|++ .++.++.|..|. +..++++||
T Consensus 29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~---~~~~~~~Vd~d~-----------------------~~~l~~~~~ 82 (119)
T d2es7a1 29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQ---FDWQVAVADLEQ-----------------------SEAIGDRFN 82 (119)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTCTT---SCCEEEEECHHH-----------------------HHHHHHTTT
T ss_pred CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCC---CceEEEEEECCC-----------------------CHHHHHhcC
Confidence 347899999999999999999999999999974 456666665543 578999999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
|+++||++++ ++|+.+.+ ..|... .++|.+.++.
T Consensus 83 V~~~Pt~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~i~~ 116 (119)
T d2es7a1 83 VRRFPATLVF-TDGKLRGA-------LSGIHP-------WAELLTLMRS 116 (119)
T ss_dssp CCSSSEEEEE-SCC----C-------EESCCC-------HHHHHHHHHH
T ss_pred cCcceEEEEE-EcCeEEEE-------eeCCCC-------HHHHHHHHHH
Confidence 9999999999 68887776 567666 4555555554
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.47 E-value=3.5e-14 Score=107.40 Aligned_cols=71 Identities=23% Similarity=0.497 Sum_probs=59.9
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++|+|+||++||++|+.+.|.+.++.+++.+. +.++.|++|.+ ..++++|+|
T Consensus 16 ~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~-----------------------~~l~~~~~V 69 (104)
T d1fb6a_ 16 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA-----------------------PGIATQYNI 69 (104)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccc-----------------------hhhhhhcce
Confidence 3689999999999999999999999999998776 45666655532 589999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
+++||++++. +|+.+.+
T Consensus 70 ~~~Pt~~~~~-~G~~v~~ 86 (104)
T d1fb6a_ 70 RSIPTVLFFK-NGERKES 86 (104)
T ss_dssp CSSSEEEEEE-TTEEEEE
T ss_pred eeeeEEEEEE-cCeEEEE
Confidence 9999999995 8887754
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.47 E-value=4.3e-14 Score=108.68 Aligned_cols=71 Identities=23% Similarity=0.581 Sum_probs=58.4
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
-.+++++|+||++||++|+.+.|.|.++++.+++ +.+ +.+|.++. ..++++|+
T Consensus 26 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~--~~vd~~~~---------------------~~l~~~~~ 78 (114)
T d1xfla_ 26 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLF--LKVDTDEL---------------------KSVASDWA 78 (114)
T ss_dssp HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS----EEE--EEEETTTS---------------------HHHHHHTT
T ss_pred ccCCeEEEEEEcCCCCCccccccchhhhcccccc----cce--eEEEeeec---------------------eeeccccc
Confidence 3589999999999999999999999999988754 444 44554443 68899999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
|+++||++++ .+|+.+.+
T Consensus 79 V~~~Pt~~~~-~~G~~v~~ 96 (114)
T d1xfla_ 79 IQAMPTFMFL-KEGKILDK 96 (114)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred eeeeEEEEEE-ECCEEEEE
Confidence 9999999999 49987654
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.5e-14 Score=111.91 Aligned_cols=82 Identities=18% Similarity=0.423 Sum_probs=63.9
Q ss_pred ccCccCCCEEEEEEecC-------CChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecCh
Q 016404 36 PLSSCGGKTICLFFSAN-------WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108 (390)
Q Consensus 36 ~l~~~~gk~vll~F~a~-------~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
.+.+.+||+|+|+|||+ ||+||+++.|.+.++++.++++ +.++.|++|.... ..
T Consensus 15 ~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~---~~~~~vdv~~~~~----------------~~ 75 (119)
T d1woua_ 15 AVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPY----------------WK 75 (119)
T ss_dssp HHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHH----------------HH
T ss_pred HHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc---eEEEEEECCCCcc----------------cc
Confidence 34556899999999995 9999999999999999887754 7888888764221 11
Q ss_pred hHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 109 TLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 109 ~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
+.+..++++|+|.++||+++++..+++.
T Consensus 76 d~~~~l~~~~~V~~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 76 DPNNDFRKNLKVTAVPTLLKYGTPQKLV 103 (119)
T ss_dssp CTTCHHHHHHCCCSSSEEEETTSSCEEE
T ss_pred hhhhhHHHhCCeEEEEEEEEEECCeEEe
Confidence 2236788999999999999997444443
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=4.7e-13 Score=109.78 Aligned_cols=116 Identities=18% Similarity=0.267 Sum_probs=79.5
Q ss_pred CceEE-eCCCCeeeecccCCcEEEEEEccCCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEecCCCH---HHHHHhhh
Q 016404 184 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH---KEFDLNHS 258 (390)
Q Consensus 184 p~f~l-~~~g~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~---~~~~~~~~ 258 (390)
+||++ |.+|+++++++++||++||+||.+||+. |......+..+...+.......+.++.++.+... +....+..
T Consensus 7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
T d2b7ka1 7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 86 (169)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence 58999 9999999999999999999999999987 7777777777776665433456677777765532 22333322
Q ss_pred --cCCcccccCCchHHHHHHHH----------------ccccccceEEEECCCCcEEee
Q 016404 259 --IMPWLAIPYEDRARQDLCRI----------------FNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 259 --~~~~~~~~~~~~~~~~l~~~----------------~~v~~~P~~~lid~~G~v~~~ 299 (390)
...|..+.........+... |.+...|+++|||++|+|+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~ 145 (169)
T d2b7ka1 87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA 145 (169)
T ss_dssp TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEE
Confidence 22233333332222333333 345567999999999999987
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.46 E-value=3.2e-14 Score=109.03 Aligned_cols=72 Identities=21% Similarity=0.438 Sum_probs=60.3
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
..+|+|+|+||++||++|+.+.|.|++++++++++ +.++.|++| +. ..++++|+
T Consensus 22 ~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d--~~---------------------~~l~~~~~ 75 (112)
T d1ep7a_ 22 EEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVD--AV---------------------AAVAEAAG 75 (112)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETT--TT---------------------HHHHHHHT
T ss_pred hcCCeEEEEEEcCCcCCCcccchhhhhhhhcccce---EEEEEeecc--cc---------------------cccccccc
Confidence 35899999999999999999999999999998764 555555554 32 68999999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
|+++||++++. +|+.+.+
T Consensus 76 v~~~Pt~~~~~-~G~~v~~ 93 (112)
T d1ep7a_ 76 ITAMPTFHVYK-DGVKADD 93 (112)
T ss_dssp CCBSSEEEEEE-TTEEEEE
T ss_pred ccCCCEEEEEE-CCEEEEE
Confidence 99999999995 8987754
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=2.9e-14 Score=110.31 Aligned_cols=83 Identities=17% Similarity=0.297 Sum_probs=60.7
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
..+++.+||+|+|+|||+||++|+.+.|.+.+..+..+.. .++.++.+.++.+. +....+
T Consensus 15 ~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~-------------------~~~~~l 74 (117)
T d2fwha1 15 QALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTAND-------------------AQDVAL 74 (117)
T ss_dssp HHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTCC-------------------HHHHHH
T ss_pred HHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhc-cceEEEecccccch-------------------hHHHHH
Confidence 4456678999999999999999999999884433322221 11445555554322 234789
Q ss_pred HHhcCcCCCCeEEEEcCCCcccc
Q 016404 115 RIRYRVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 115 ~~~~~v~~~P~~~~~d~~G~i~~ 137 (390)
+++|+|.++||+++++++|+++.
T Consensus 75 ~~~~~v~~~Pt~~~~~~~G~~~~ 97 (117)
T d2fwha1 75 LKHLNVLGLPTILFFDGQGQEHP 97 (117)
T ss_dssp HHHTTCCSSSEEEEECTTSCBCG
T ss_pred HhhhehhhceEEEEEeCCCcEEe
Confidence 99999999999999999998764
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.4e-14 Score=108.45 Aligned_cols=71 Identities=25% Similarity=0.535 Sum_probs=58.2
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
.++|+|+|+|||+||++|+.+.|.+.++.+.+.+ +.+ +.+|.+.. ..++++|+
T Consensus 18 ~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~--~~vd~d~~---------------------~~~~~~~~ 70 (105)
T d2ifqa1 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIF--LEVDVDDC---------------------QDVASECE 70 (105)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEE--EEEETTTC---------------------HHHHHHTT
T ss_pred CCCCEEEEEEEcCCccchhhhhhhhhhhcccccc----cee--eecccccC---------------------HhHHHHcC
Confidence 3578999999999999999999999999998764 234 44454443 67899999
Q ss_pred cCCCCeEEEEcCCCccccc
Q 016404 120 VDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~ 138 (390)
|+++||++++. +|+.+.+
T Consensus 71 V~~~Pt~~~~~-~G~~v~~ 88 (105)
T d2ifqa1 71 VKCMPTFQFFK-KGQKVGE 88 (105)
T ss_dssp CCBSSEEEEEE-TTEEEEE
T ss_pred ceEEEEEEEEE-CCEEEEE
Confidence 99999999995 8988754
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.46 E-value=3.8e-14 Score=108.85 Aligned_cols=72 Identities=29% Similarity=0.629 Sum_probs=59.2
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (390)
..+|+|+|+||++||++|+.+.|.|.++.+++.+ +.++.|++| .. ..++++|+
T Consensus 24 ~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d--~~---------------------~~l~~~~~ 76 (113)
T d1ti3a_ 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN----VTFLKVDVD--EL---------------------KAVAEEWN 76 (113)
T ss_dssp TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS----EEEEEEETT--TC---------------------HHHHHHHH
T ss_pred cCCCEEEEEEEcCccccchhhhhhhhhhhccCCC----ceEEeeeee--cc---------------------ccccccCe
Confidence 3579999999999999999999999999988753 445555544 32 67899999
Q ss_pred cCCCCeEEEEcCCCcccccc
Q 016404 120 VDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 120 v~~~P~~~~~d~~G~i~~~~ 139 (390)
|+++||++++. +|+.+.+.
T Consensus 77 I~~~Pt~~~~k-~G~~v~~~ 95 (113)
T d1ti3a_ 77 VEAMPTFIFLK-DGKLVDKT 95 (113)
T ss_dssp CSSTTEEEEEE-TTEEEEEE
T ss_pred ecccceEEEEE-CCEEEEEE
Confidence 99999999996 99877543
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.46 E-value=4.9e-14 Score=107.34 Aligned_cols=71 Identities=23% Similarity=0.590 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|.||++||++|+.+.|.|.++++++.+. +.++.|++|.. ..++++|+|
T Consensus 19 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~-----------------------~~l~~~~~I 72 (108)
T d1thxa_ 19 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN-----------------------PTTVKKYKV 72 (108)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC-----------------------HHHHHHTTC
T ss_pred CCCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceeccccc-----------------------HHHHHHhcc
Confidence 3689999999999999999999999999998765 56666666532 588999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
+++||+++++ +|+.+.+
T Consensus 73 ~~~Pt~~~~~-~g~~v~~ 89 (108)
T d1thxa_ 73 EGVPALRLVK-GEQILDS 89 (108)
T ss_dssp CSSSEEEEEE-TTEEEEE
T ss_pred cCCCEEEEEE-CCEEEEE
Confidence 9999999996 8877643
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.46 E-value=1.3e-13 Score=105.46 Aligned_cols=71 Identities=21% Similarity=0.526 Sum_probs=58.8
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+|+++|+||++||++|+.+.|.|.++++++.+ +.++.|++|.+. ..++++|+|
T Consensus 24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~----v~~~~vd~~~~~----------------------~~l~~~~~V 77 (112)
T d1f9ma_ 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQEN----------------------KTLAKELGI 77 (112)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSTT----------------------HHHHHHHCC
T ss_pred CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc----ceeecccccccc----------------------hhhHhheee
Confidence 468999999999999999999999999999864 445555554322 689999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||++++. +|+.+.+
T Consensus 78 ~~~Pt~~~~k-~G~~v~~ 94 (112)
T d1f9ma_ 78 RVVPTFKILK-ENSVVGE 94 (112)
T ss_dssp SSSSEEEEEE-TTEEEEE
T ss_pred ccCCEEEEEE-CCEEEEE
Confidence 9999999995 8988754
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.4e-14 Score=111.20 Aligned_cols=72 Identities=10% Similarity=0.228 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++|+|+|.|||+||++|+.+.|.|.++++++++. +.++.|++|.. .+++++|+|
T Consensus 21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~-----------------------~~la~~~~I 74 (137)
T d1qgva_ 21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV-----------------------PDFNKMYEL 74 (137)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC-----------------------CTTTTSSCS
T ss_pred CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeecccc-----------------------chhhhhcCe
Confidence 5789999999999999999999999999999875 55666665533 478899999
Q ss_pred CCCCeEEEEcCCCcccccc
Q 016404 121 DRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~ 139 (390)
.++||+++|. +|+.+..+
T Consensus 75 ~~~PT~~~f~-~g~~i~~~ 92 (137)
T d1qgva_ 75 YDPCTVMFFF-RNKHIMID 92 (137)
T ss_dssp CSSCEEEEEE-TTEEEEEE
T ss_pred eeEEEEEEEe-CCcEEEEE
Confidence 9999999995 88766443
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.45 E-value=3.2e-14 Score=103.38 Aligned_cols=66 Identities=24% Similarity=0.367 Sum_probs=54.1
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+|+.|++|||+||++|+.+.|.+.++.+.+. ..+.++.+..|. +.+++++|+|
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~~~~d~-----------------------~~~la~~~~V 54 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMP----DAVEVEYINVME-----------------------NPQKAMEYGI 54 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCS----SSEEEEEEESSS-----------------------SCCTTTSTTT
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccc----cccccccccccc-----------------------cccccccCCc
Confidence 4889999999999999999999999999886 456676676664 3567889999
Q ss_pred cccceEEEECCCCc
Q 016404 282 KGIPALVLIGPDGK 295 (390)
Q Consensus 282 ~~~P~~~lid~~G~ 295 (390)
.++||++ ++++|+
T Consensus 55 ~~~Pt~~-i~~~g~ 67 (85)
T d1fo5a_ 55 MAVPTIV-INGDVE 67 (85)
T ss_dssp CCSSEEE-ETTEEE
T ss_pred eEeeEEE-EECCcE
Confidence 9999975 556665
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.1e-13 Score=109.30 Aligned_cols=70 Identities=17% Similarity=0.379 Sum_probs=60.8
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+|+|||.|||+||++|+.+.|.|.+++++|+ +.+.++.|.+|.. .++++.|+|
T Consensus 22 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~~v~~~~VDvd~~-----------------------~~la~~~~I 74 (137)
T d1qgva_ 22 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK----NFAVIYLVDITEV-----------------------PDFNKMYEL 74 (137)
T ss_dssp SSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTC-----------------------CTTTTSSCS
T ss_pred CCEEEEEEECCCCccchhcChHHHHHHHHhh----ccceEEEeecccc-----------------------chhhhhcCe
Confidence 4899999999999999999999999999997 4577877877753 678899999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++ ++|+.+..
T Consensus 75 ~~~PT~~~f-~~g~~i~~ 91 (137)
T d1qgva_ 75 YDPCTVMFF-FRNKHIMI 91 (137)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred eeEEEEEEE-eCCcEEEE
Confidence 999999999 67776654
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.4e-14 Score=107.23 Aligned_cols=72 Identities=11% Similarity=0.296 Sum_probs=59.1
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 39 ~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
...+|+++|+||++||++|+.+.|.|.++++++.+ +.++.|++| +. ..++++|
T Consensus 18 ~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~----~~f~~vd~d--~~---------------------~~l~~~~ 70 (107)
T d1gh2a_ 18 GAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLEVDVH--QC---------------------QGTAATN 70 (107)
T ss_dssp HTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT----SEEEEEETT--TS---------------------HHHHHHT
T ss_pred hCCCCEEEEEEECCCCCCccccchhhhcccccccc----ccccccccc--cc---------------------hhhhhhc
Confidence 34588999999999999999999999999998764 445555544 33 6889999
Q ss_pred CcCCCCeEEEEcCCCccccc
Q 016404 119 RVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~~~ 138 (390)
+|.++||++++. +|+.+.+
T Consensus 71 ~v~~~Pt~~~~~-~G~~v~~ 89 (107)
T d1gh2a_ 71 NISATPTFQFFR-NKVRIDQ 89 (107)
T ss_dssp TCCSSSEEEEEE-TTEEEEE
T ss_pred CceeceEEEEEE-CCEEEEE
Confidence 999999999994 8987754
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=2.1e-13 Score=105.65 Aligned_cols=104 Identities=17% Similarity=0.319 Sum_probs=74.9
Q ss_pred eCCCCeeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCC
Q 016404 189 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 268 (390)
Q Consensus 189 ~~~g~~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~ 268 (390)
.++.+++.-.--+++.++|.||++||++|+.+.|.+.++.+.++. .++.|+.|+++.
T Consensus 14 ~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~---~~v~~~~vd~~~-------------------- 70 (119)
T d2b5ea4 14 KLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE---KNITLAQIDCTE-------------------- 70 (119)
T ss_dssp ECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TTCEEEEEETTT--------------------
T ss_pred EcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcc---cceeeeeeeccc--------------------
Confidence 444444432222458999999999999999999999999999874 668888888775
Q ss_pred chHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhc
Q 016404 269 DRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 331 (390)
Q Consensus 269 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 331 (390)
+..++++|+|.++||++++ ++|+...+. .+.|... .+.|.+.+++.+
T Consensus 71 ---~~~l~~~~~v~~~Pti~~f-~~g~~~~~~-----~y~g~~~-------~~~l~~fi~k~~ 117 (119)
T d2b5ea4 71 ---NQDLCMEHNIPGFPSLKIF-KNSDVNNSI-----DYEGPRT-------AEAIVQFMIKQS 117 (119)
T ss_dssp ---CHHHHHHTTCCSSSEEEEE-ETTCTTCEE-----ECCSCCS-------HHHHHHHHHHHT
T ss_pred ---hHHHHHHhccccCCeEEEE-ECCEEeeeE-----EecCCCC-------HHHHHHHHHHhh
Confidence 3789999999999999999 555433220 1234333 666777676643
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=5.8e-14 Score=108.58 Aligned_cols=80 Identities=20% Similarity=0.429 Sum_probs=62.9
Q ss_pred cccCCcEEEEEEccC-------CCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCch
Q 016404 198 SELAGKTIGLYFGAH-------WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR 270 (390)
Q Consensus 198 ~~~~gk~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 270 (390)
.+.+||+|+|+|||+ ||++|+++.|.+.++++.++ .++.++.|.++... ++ .|
T Consensus 17 ~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~----~~~~~~~vdv~~~~-~~---------------~d 76 (119)
T d1woua_ 17 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS----EGCVFIYCQVGEKP-YW---------------KD 76 (119)
T ss_dssp HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC----TTEEEEEEECCCHH-HH---------------HC
T ss_pred HHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcC----CceEEEEEECCCCc-cc---------------ch
Confidence 345689999999995 99999999999999988876 56888888887421 11 11
Q ss_pred HHHHHHHHccccccceEEEECCCCcEE
Q 016404 271 ARQDLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 271 ~~~~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
.+..++++|+|.++||+++++..++++
T Consensus 77 ~~~~l~~~~~V~~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 77 PNNDFRKNLKVTAVPTLLKYGTPQKLV 103 (119)
T ss_dssp TTCHHHHHHCCCSSSEEEETTSSCEEE
T ss_pred hhhhHHHhCCeEEEEEEEEEECCeEEe
Confidence 246789999999999999996555554
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.43 E-value=8.4e-14 Score=106.72 Aligned_cols=71 Identities=21% Similarity=0.465 Sum_probs=59.5
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|+|||+||++|+.+.|.|.++++++.+ +.++.|++|.. ..++++|+|
T Consensus 25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~-----------------------~~l~~~~~V 77 (113)
T d1r26a_ 25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT----VKFAKVDADNN-----------------------SEIVSKCRV 77 (113)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred CCCeEEEEEECCCCccchhhceecccccccccc----ccccccccccc-----------------------hhhHHHccc
Confidence 578999999999999999999999999998853 55666665532 589999999
Q ss_pred CCCCeEEEEcCCCcccccc
Q 016404 121 DRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~~ 139 (390)
.++||++++. +|+.+.+.
T Consensus 78 ~~~Pt~~~~~-~G~~v~~~ 95 (113)
T d1r26a_ 78 LQLPTFIIAR-SGKMLGHV 95 (113)
T ss_dssp CSSSEEEEEE-TTEEEEEE
T ss_pred cCCCEEEEEE-CCEEEEEE
Confidence 9999999995 89887543
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.6e-13 Score=115.37 Aligned_cols=108 Identities=23% Similarity=0.271 Sum_probs=91.7
Q ss_pred eecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhC------
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCM------ 99 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~------ 99 (390)
+.+.+|+ ++|++++||+++|+|| +.||+.|..++..|.+.+++|++.+ ++|++||.|... +.++|...+
T Consensus 19 ~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~vigIS~D~~~-~~~~~~~~~~~~~~~ 95 (197)
T d1qmva_ 19 VVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG--CEVLGVSVDSQF-THLAWINTPRKEGGL 95 (197)
T ss_dssp EETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHH-HHHHHHTSCGGGTCC
T ss_pred eeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCC--cEEEEEecCCHH-HHHhhhcchhhhcCc
Confidence 4577888 9999999999999999 9999999999999999999999988 999999999543 456666643
Q ss_pred CCcceecChhHHHHHHHhcCcC------CCCeEEEEcCCCccccc
Q 016404 100 PWLAVPFDETLHKKLRIRYRVD------RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~v~------~~P~~~~~d~~G~i~~~ 138 (390)
.-+.+|+..|...++++.||+. ..|+.++||++|+|++.
T Consensus 96 ~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~ 140 (197)
T d1qmva_ 96 GPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQI 140 (197)
T ss_dssp CSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred CCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEE
Confidence 2367777888889999999984 46899999999999754
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.40 E-value=1.9e-13 Score=112.33 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=77.8
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.++|.+.+|+ ++|++++||++||+|| +.|||.|..+++.|++.++ +.+ ++|++|+.|. ..+.+++.+.+...
T Consensus 25 ~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~---~~g--~~vv~Is~d~-~~~~~~~~~~~~~~ 98 (166)
T d1xvqa_ 25 AFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAA---ASG--ATVLCVSKDL-PFAQKRFCGAEGTE 98 (166)
T ss_dssp CCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHH---HTT--CEEEEEESSC-HHHHTTCC------
T ss_pred CeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhcc---ccc--ccccccccch-HHHHHHHHHHhCCc
Confidence 4569999999 9999999999999999 5588889999888766554 445 7799999884 34455666655433
Q ss_pred ceecChhHHHHHHHhcCcC---------CCCeEEEEcCCCccccccc
Q 016404 103 AVPFDETLHKKLRIRYRVD---------RIPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~~~~~~~~l~~~~~v~---------~~P~~~~~d~~G~i~~~~~ 140 (390)
......+....+.+.|++. ..|+++++|++|+|++...
T Consensus 99 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~ 145 (166)
T d1xvqa_ 99 NVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL 145 (166)
T ss_dssp CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEE
T ss_pred ccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEE
Confidence 2222233345667777753 2468999999999997654
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.3e-12 Score=106.48 Aligned_cols=115 Identities=17% Similarity=0.301 Sum_probs=88.1
Q ss_pred CcceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhhCC--CcEEEEEEecCCC---hhHHHHHH
Q 016404 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRG--TELEVIFISFDHD---ENGFEEHF 96 (390)
Q Consensus 24 ~~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~-~C~~~~p~l~~~~~~~~~~~--~~~~vv~v~~d~~---~~~~~~~~ 96 (390)
+.++|.|.+|+ +++++++||++||+||.+||+ .|....+.+.++++++...+ ..+.+..++.+.+ .....++.
T Consensus 1 gdF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1wp0a1 1 GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYV 80 (160)
T ss_dssp CCCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHH
T ss_pred CCeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHH
Confidence 35789999999 999999999999999999997 79999999999999987654 3366777777643 33455555
Q ss_pred HhC--CCcceecChhHHHHHHHhcCcC---------------CCCeEEEEcCCCccccc
Q 016404 97 KCM--PWLAVPFDETLHKKLRIRYRVD---------------RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 97 ~~~--~~~~~~~~~~~~~~l~~~~~v~---------------~~P~~~~~d~~G~i~~~ 138 (390)
... .|..+.........+...|++. +.++++|+|++|+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~ 139 (160)
T d1wp0a1 81 KEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 139 (160)
T ss_dssp HTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEE
T ss_pred hhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEE
Confidence 544 3555555666666777888753 34688999999999854
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.39 E-value=2.6e-13 Score=102.29 Aligned_cols=70 Identities=20% Similarity=0.462 Sum_probs=58.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++++++|+||++||++|+.+.|.+.++++++.+ ..++.+++| .. ..++++|+|
T Consensus 17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d--~~---------------------~~~~~~~~V 69 (103)
T d1syra_ 17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVD--EV---------------------SEVTEKENI 69 (103)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETT--TT---------------------HHHHHHTTC
T ss_pred CCCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeeccc--cC---------------------cceeeeeee
Confidence 478999999999999999999999999998864 345555544 32 578999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||++++. +|+.+.+
T Consensus 70 ~~~Pt~i~~k-~G~~v~~ 86 (103)
T d1syra_ 70 TSMPTFKVYK-NGSSVDT 86 (103)
T ss_dssp CSSSEEEEEE-TTEEEEE
T ss_pred ecceEEEEEE-CCEEEEE
Confidence 9999999995 8987754
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.39 E-value=4.1e-14 Score=102.81 Aligned_cols=67 Identities=15% Similarity=0.338 Sum_probs=53.5
Q ss_pred CCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcC
Q 016404 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVD 121 (390)
Q Consensus 42 gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 121 (390)
+|+.+++|||+||+||+.+.|.+.++++.++.. +.++.++.|.. .+++++|+|+
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~~-----------------------~~la~~~~V~ 55 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN-----------------------PQKAMEYGIM 55 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSS-----------------------CCTTTSTTTC
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccc---ccccccccccc-----------------------ccccccCCce
Confidence 588999999999999999999999999987654 45555554432 4678999999
Q ss_pred CCCeEEEEcCCCcc
Q 016404 122 RIPSLIPLASDGTL 135 (390)
Q Consensus 122 ~~P~~~~~d~~G~i 135 (390)
++||++++ .+|++
T Consensus 56 ~~Pt~~i~-~~g~~ 68 (85)
T d1fo5a_ 56 AVPTIVIN-GDVEF 68 (85)
T ss_dssp CSSEEEET-TEEEC
T ss_pred EeeEEEEE-CCcEE
Confidence 99998765 56654
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.38 E-value=3.3e-13 Score=110.62 Aligned_cols=110 Identities=17% Similarity=0.090 Sum_probs=86.1
Q ss_pred ceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcc
Q 016404 26 EFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLA 103 (390)
Q Consensus 26 ~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 103 (390)
++|.+.+|+ ++|++++||+++|+|| +.|||.|..+++.|++.++++++ ..+++|+.|. ....++|.+++....
T Consensus 25 F~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~----~~vi~iS~d~-~~~~~~~~~~~~~~~ 99 (164)
T d1q98a_ 25 FILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN----TIVLCISADL-PFAQARFCGAEGIEN 99 (164)
T ss_dssp CEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT----EEEEEEESSC-HHHHTTCTTTTTCTT
T ss_pred cEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhcc----ceEEeecCCc-HHHHHHHHHHhCCcc
Confidence 559999999 9999999999999999 55788899999999999999963 7899999984 445667777665433
Q ss_pred eec-ChhHHHHHHHhcCcC-------C--CCeEEEEcCCCccccccc
Q 016404 104 VPF-DETLHKKLRIRYRVD-------R--IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 104 ~~~-~~~~~~~l~~~~~v~-------~--~P~~~~~d~~G~i~~~~~ 140 (390)
++. +.+....+.+.|++. + .|+++++|++|+|++...
T Consensus 100 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~ 146 (164)
T d1q98a_ 100 AKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQL 146 (164)
T ss_dssp EEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred ccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEE
Confidence 333 333446788888863 2 388999999999987543
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.38 E-value=1.4e-12 Score=96.69 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=57.1
Q ss_pred ccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 199 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 199 ~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
++.|.+.++.|+++||++|+.+.|.|+++.+.+ .++.+..|..+. +.++++.
T Consensus 12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-----~~i~~~~vd~~~-----------------------~~~l~~~ 63 (96)
T d1hyua4 12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-----PRIKHTAIDGGT-----------------------FQNEITE 63 (96)
T ss_dssp HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-----TTEEEEEEETTT-----------------------CHHHHHH
T ss_pred hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC-----CceEEEEEeccc-----------------------chHHHhh
Confidence 345677889999999999999999999998775 457777777665 4789999
Q ss_pred ccccccceEEEECCCCcEEee
Q 016404 279 FNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 279 ~~v~~~P~~~lid~~G~v~~~ 299 (390)
|+|.++||+++ +|+.++.
T Consensus 64 ~~I~~vPt~~~---ng~~~~~ 81 (96)
T d1hyua4 64 RNVMGVPAVFV---NGKEFGQ 81 (96)
T ss_dssp TTCCSSSEEEE---TTEEEEE
T ss_pred cccccccEEEE---CCEEEEe
Confidence 99999999765 7777654
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.38 E-value=3.4e-13 Score=97.77 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=51.2
Q ss_pred EEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccccc
Q 016404 205 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 284 (390)
Q Consensus 205 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 284 (390)
.+..|||+||++|+++.|.++++.++|. .++.++.+++|.. .+++++|||.++
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~d~~-----------------------~~l~~~~~V~~~ 56 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFG----DKIDVEKIDIMVD-----------------------REKAIEYGLMAV 56 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHC----SSCCEEEECTTTC-----------------------GGGGGGTCSSCS
T ss_pred EEEEEECCCCcchHHHHHHHhhhccccc----ccccccccccccc-----------------------hhhHHhcCceEe
Confidence 4566999999999999999999999997 5677888877753 678899999999
Q ss_pred ceEEEECCCC
Q 016404 285 PALVLIGPDG 294 (390)
Q Consensus 285 P~~~lid~~G 294 (390)
||+++ +.+|
T Consensus 57 Pt~~~-~~~~ 65 (85)
T d1nhoa_ 57 PAIAI-NGVV 65 (85)
T ss_dssp SEEEE-TTTE
T ss_pred CEEEE-CCcE
Confidence 99755 4443
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=4.5e-13 Score=103.72 Aligned_cols=83 Identities=20% Similarity=0.345 Sum_probs=63.2
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceec
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF 106 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 106 (390)
++.++.+ +.---.+++.++|.||++||++|+.+.|.|.++++.+++.+ +.+..|+++ .+
T Consensus 12 v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~--v~~~~vd~~--~~---------------- 71 (119)
T d2b5ea4 12 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCT--EN---------------- 71 (119)
T ss_dssp CEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETT--TC----------------
T ss_pred cEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccc--eeeeeeecc--ch----------------
Confidence 3444444 33222257899999999999999999999999999987654 555555554 32
Q ss_pred ChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 107 DETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 107 ~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
..++++|+|.++||++++ ++|+..
T Consensus 72 -----~~l~~~~~v~~~Pti~~f-~~g~~~ 95 (119)
T d2b5ea4 72 -----QDLCMEHNIPGFPSLKIF-KNSDVN 95 (119)
T ss_dssp -----HHHHHHTTCCSSSEEEEE-ETTCTT
T ss_pred -----HHHHHHhccccCCeEEEE-ECCEEe
Confidence 689999999999999999 477554
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.38 E-value=8.1e-13 Score=101.61 Aligned_cols=74 Identities=24% Similarity=0.467 Sum_probs=59.2
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
+++++|+||++||++|+.+.|.|.++.++++. .+.++.++...+ .+....++++|+|
T Consensus 26 ~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~------~v~~v~~~~~~~-----------------~~~~~~~~~~~~V 82 (115)
T d1zmaa1 26 KETATFFIGRKTCPYCRKFAGTLSGVVAETKA------HIYFINSEEPSQ-----------------LNDLQAFRSRYGI 82 (115)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC------CCEEEETTCGGG-----------------HHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh------hhhhheeecccc-----------------ccccccccccccc
Confidence 57899999999999999999999999988863 356666664321 1123578899999
Q ss_pred cccceEEEECCCCcEEee
Q 016404 282 KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 ~~~P~~~lid~~G~v~~~ 299 (390)
.++||++++ ++|+++.+
T Consensus 83 ~~~PTli~~-~~gk~~~~ 99 (115)
T d1zmaa1 83 PTVPGFVHI-TDGQINVR 99 (115)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 68888776
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.37 E-value=4.8e-13 Score=101.53 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=57.7
Q ss_pred cCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhh-CCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH
Q 016404 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 37 l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
+....++++++.||++||+||+.+.|.+.+++..... .+..+. ++.+|.++. ..++
T Consensus 10 ~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~--~~~id~~~~---------------------~~l~ 66 (107)
T d1a8la2 10 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKIL--GDMVEAIEY---------------------PEWA 66 (107)
T ss_dssp HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEE--EEEEEGGGC---------------------HHHH
T ss_pred HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEE--EEEeccccc---------------------cccc
Confidence 3455667778889999999999999999999876443 222244 444444342 6899
Q ss_pred HhcCcCCCCeEEEEcCCCccccc
Q 016404 116 IRYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 116 ~~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
++|+|.++||++++ .+|+.+.+
T Consensus 67 ~~~~V~~vPTi~i~-~~G~~~~~ 88 (107)
T d1a8la2 67 DQYNVMAVPKIVIQ-VNGEDRVE 88 (107)
T ss_dssp HHTTCCSSCEEEEE-ETTEEEEE
T ss_pred cccccccceEEEEE-eCCeEEEE
Confidence 99999999998776 58877643
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.2e-13 Score=105.76 Aligned_cols=93 Identities=23% Similarity=0.434 Sum_probs=67.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++|.++|.|||+||++|+.+.|.+.++.+.+.. ....+.++.|.++. +..++++|+
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~-~~~~v~~~~vd~~~-----------------------~~~l~~~~~ 78 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA-EGSEIRLAKVDATE-----------------------ESDLAQQYG 78 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT-TCCCCBCEEEETTT-----------------------CCSSHHHHT
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhcccccc-cccceeeecccccc-----------------------chhHHHHhC
Confidence 458999999999999999999999999999874 23445556665554 356888999
Q ss_pred ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHh
Q 016404 281 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 330 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 330 (390)
|.++||++++ ++|+.+.. ..+.|.+. .+.|.+.+++.
T Consensus 79 i~~~Pt~~~~-~~G~~~~~-----~~~~g~~~-------~~~l~~fi~~~ 115 (120)
T d1meka_ 79 VRGYPTIKFF-RNGDTASP-----KEYTAGRE-------ADDIVNWLKKR 115 (120)
T ss_dssp CCSSSEEEEE-ESSCSSSC-----EECCCCSS-------HHHHHHHHHTT
T ss_pred CccCCeEEEE-ECCeEeee-----EEecCCCC-------HHHHHHHHHHh
Confidence 9999999999 45443221 01234443 67777777763
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.37 E-value=6.3e-13 Score=108.87 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=82.8
Q ss_pred cceeecCCCc-cccCccCCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCc
Q 016404 25 VEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWL 102 (390)
Q Consensus 25 ~~~l~~~~g~-~~l~~~~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~ 102 (390)
.+.|.+.+|+ ++|++++||+++|.|| +.|||+|..+++.+.+.+.++++ +.+++|+.|.. ...+++.......
T Consensus 24 dF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~----~~vv~Is~d~~-~~~~~~~~~~~~~ 98 (163)
T d1psqa_ 24 DFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN----TVVLTVSMDLP-FAQKRWCGAEGLD 98 (163)
T ss_dssp CCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTT----EEEEEEESSCH-HHHHHHHHHHTCT
T ss_pred CeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhcc----cceEEEEeccH-HHHHHHHHHcCCc
Confidence 3559999999 9999999999999999 77999999999999888777743 78999998843 3345555544322
Q ss_pred ceec-ChhHHHHHHHhcCcCC------CCeEEEEcCCCccccccc
Q 016404 103 AVPF-DETLHKKLRIRYRVDR------IPSLIPLASDGTLIEEDL 140 (390)
Q Consensus 103 ~~~~-~~~~~~~l~~~~~v~~------~P~~~~~d~~G~i~~~~~ 140 (390)
..+. ..+....+.+.||+.. .++.+++|++|+|++...
T Consensus 99 ~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~ 143 (163)
T d1psqa_ 99 NAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEY 143 (163)
T ss_dssp TSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEE
T ss_pred ceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEE
Confidence 2222 3334457888898742 236899999999987654
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.36 E-value=7.3e-13 Score=101.85 Aligned_cols=75 Identities=19% Similarity=0.422 Sum_probs=61.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+++++|+||++||++|+.+.|.|.++.++++.. +.+++++...+ .+....++++|+|
T Consensus 25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-----v~~v~~~~~~~-----------------~~~~~~~~~~~~V 82 (115)
T d1zmaa1 25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-----IYFINSEEPSQ-----------------LNDLQAFRSRYGI 82 (115)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-----CEEEETTCGGG-----------------HHHHHHHHHHHTC
T ss_pred cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-----hhhheeecccc-----------------ccccccccccccc
Confidence 5889999999999999999999999999988654 67777774432 2334678999999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||+++++ +|+++.+
T Consensus 83 ~~~PTli~~~-~gk~~~~ 99 (115)
T d1zmaa1 83 PTVPGFVHIT-DGQINVR 99 (115)
T ss_dssp CSSCEEEEEE-TTEEEEE
T ss_pred ccccEEEEEE-CCEEEEE
Confidence 9999999996 8876643
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.36 E-value=9.2e-13 Score=108.43 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=88.2
Q ss_pred cCCCc-cccCccCC-CEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC------
Q 016404 30 SRQGK-VPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP------ 100 (390)
Q Consensus 30 ~~~g~-~~l~~~~g-k~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~------ 100 (390)
+.+++ ++|+++.| |++||+|| +.|||.|..++..+++.+++|++.+ ++|++|+.|.- .+.++|.++..
T Consensus 13 d~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g--~~vigIS~D~~-~~~~~~~~~~~~~~~~~ 89 (170)
T d2h01a1 13 DNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDSK-FTHLAWKKTPLSQGGIG 89 (170)
T ss_dssp TSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSCH-HHHHHHHTSCGGGTCCC
T ss_pred CCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC--eeEecccCCcH-HHHHhHhhhhhhhcccc
Confidence 56677 99999998 79999999 8999999999999999999999988 99999999943 34466665432
Q ss_pred CcceecChhHHHHHHHhcCcC-----CCCeEEEEcCCCcccccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVD-----RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~-----~~P~~~~~d~~G~i~~~~ 139 (390)
-+.+|+..+....+++.||+. ..++.++||++|+|.+..
T Consensus 90 ~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~ 133 (170)
T d2h01a1 90 NIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLL 133 (170)
T ss_dssp SCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred ccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEE
Confidence 255666777789999999983 458999999999987544
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=5.9e-13 Score=113.69 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=92.3
Q ss_pred ccCcce-eecCCCccccCccCC-CEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCCh--hHHHHHH
Q 016404 22 SEGVEF-LLSRQGKVPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEEHF 96 (390)
Q Consensus 22 ~~~~~~-l~~~~g~~~l~~~~g-k~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~--~~~~~~~ 96 (390)
..+++| |.+.+|+++|+++.| |++||+|| +.||+.|..++..+++.++++++.+ +++++||.|... ..|.+..
T Consensus 5 d~APdF~l~~~~G~v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g--~~v~giS~Ds~~sh~~~~~~~ 82 (220)
T d1prxa_ 5 DVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVEDHLAWSKDI 82 (220)
T ss_dssp CBCCCCEEEETTEEEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHHHHHH
T ss_pred CCCCCcEeecCCCCEEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc--ceeeccccccccchhhhhhhh
Confidence 334444 888888899999977 89999999 7899999999999999999999988 999999999533 2344433
Q ss_pred HhC------CCcceecChhHHHHHHHhcCcC------------CCCeEEEEcCCCcccccc
Q 016404 97 KCM------PWLAVPFDETLHKKLRIRYRVD------------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 97 ~~~------~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~~~d~~G~i~~~~ 139 (390)
+.+ .-+.+|+..|.+.++++.||+. ..+++++||++|+|.+..
T Consensus 83 ~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~ 143 (220)
T d1prxa_ 83 NAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSI 143 (220)
T ss_dssp HHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEE
T ss_pred hhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEE
Confidence 321 1356777788889999999984 458899999999997543
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.6e-12 Score=106.48 Aligned_cols=70 Identities=21% Similarity=0.166 Sum_probs=62.2
Q ss_pred ceeecCC-Cc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC-------ChhHHHHHH
Q 016404 26 EFLLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHF 96 (390)
Q Consensus 26 ~~l~~~~-g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 96 (390)
+++.+++ |+ ++|++++||+|||.|||+||++|.+..+.|++++++|+++| ++|+++.++. +.++..+++
T Consensus 6 f~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g--~~Il~fP~nqF~~qE~~~~~ei~~f~ 83 (184)
T d2f8aa1 6 FSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQFGHQENAKNEEILNSL 83 (184)
T ss_dssp CEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCCSTTTTCSCHHHHHHHH
T ss_pred eEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc--eeEEEeeccccccccccchhhhhhhh
Confidence 5688876 67 99999999999999999999999999999999999999988 9999999874 345677777
Q ss_pred H
Q 016404 97 K 97 (390)
Q Consensus 97 ~ 97 (390)
+
T Consensus 84 ~ 84 (184)
T d2f8aa1 84 K 84 (184)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.2e-13 Score=107.33 Aligned_cols=72 Identities=25% Similarity=0.516 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.+|.++|.||++||++|+.+.|.+.++.+.++..+. .|.++.+|.+.. ..++.+|+|
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~--~v~~~~vd~~~~---------------------~~l~~~~~i 79 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGS--EIRLAKVDATEE---------------------SDLAQQYGV 79 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCC--CCBCEEEETTTC---------------------CSSHHHHTC
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhccccccccc--ceeeeccccccc---------------------hhHHHHhCC
Confidence 579999999999999999999999999999976653 355555555443 578899999
Q ss_pred CCCCeEEEEcCCCccc
Q 016404 121 DRIPSLIPLASDGTLI 136 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~ 136 (390)
.++||++++. +|+.+
T Consensus 80 ~~~Pt~~~~~-~G~~~ 94 (120)
T d1meka_ 80 RGYPTIKFFR-NGDTA 94 (120)
T ss_dssp CSSSEEEEEE-SSCSS
T ss_pred ccCCeEEEEE-CCeEe
Confidence 9999999995 66443
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.32 E-value=4e-13 Score=103.64 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=53.7
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 39 ~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
..++++|++.||++|||+|+.+.|.|.++.+++.+.. +.++.+|.+.+ ..++++|
T Consensus 27 ~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~----~~~~~Vd~d~~---------------------~~l~~~~ 81 (119)
T d2es7a1 27 RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD----WQVAVADLEQS---------------------EAIGDRF 81 (119)
T ss_dssp -CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSC----CEEEEECHHHH---------------------HHHHHTT
T ss_pred hCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCc----eEEEEEECCCC---------------------HHHHHhc
Confidence 3456899999999999999999999999999987643 44444554443 7899999
Q ss_pred CcCCCCeEEEEcCCCcccccc
Q 016404 119 RVDRIPSLIPLASDGTLIEED 139 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~~~~ 139 (390)
+|+++||++++ .+|+.+.+.
T Consensus 82 ~V~~~Pt~~~~-~~G~~v~~~ 101 (119)
T d2es7a1 82 NVRRFPATLVF-TDGKLRGAL 101 (119)
T ss_dssp TCCSSSEEEEE-SCC----CE
T ss_pred CcCcceEEEEE-EcCeEEEEe
Confidence 99999999999 489877543
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.2e-13 Score=107.04 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=60.3
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 39 ~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
..++++|+|.||++|||+|+.+.|.|.++.+++.+.. +.++.+|.+. +.+++++|
T Consensus 33 ~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~----~~~a~Vd~d~---------------------~~~la~~~ 87 (132)
T d2hfda1 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT----WQVAIADLEQ---------------------SEAIGDRF 87 (132)
T ss_dssp HCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSC----EEEEEECHHH---------------------HHHHHHHH
T ss_pred hCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCc----ceeEEEEecC---------------------CHHHHHhh
Confidence 3456899999999999999999999999999998764 4444455444 37999999
Q ss_pred CcCCCCeEEEEcCCCcccc
Q 016404 119 RVDRIPSLIPLASDGTLIE 137 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~~ 137 (390)
+|+++||++++ .+|+.+.
T Consensus 88 ~V~~~PT~~~~-~~G~~v~ 105 (132)
T d2hfda1 88 GVFRFPATLVF-TGGNYRG 105 (132)
T ss_dssp TCCSCCEEEEE-ETTEEEE
T ss_pred ccCcceeEEEE-EcCcEee
Confidence 99999999999 4888764
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=6.8e-13 Score=105.85 Aligned_cols=102 Identities=19% Similarity=0.339 Sum_probs=68.5
Q ss_pred eCCCCeeeeccc-CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccC
Q 016404 189 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY 267 (390)
Q Consensus 189 ~~~g~~~~l~~~-~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 267 (390)
.++++++.-.-. .+++|+|.|||+||++|+.+.|.|.++++.|+. ....+..+.+|.+
T Consensus 16 ~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~---~~~~v~~~~~d~~------------------ 74 (140)
T d2b5ea1 16 QLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN---ATSDVLIAKLDHT------------------ 74 (140)
T ss_dssp EECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHH---HCSSCEEEEEEGG------------------
T ss_pred EecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhc---cccceEEEeeecc------------------
Confidence 445554442211 357899999999999999999999999999875 3334555555542
Q ss_pred CchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 268 EDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 268 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
..+++.|+|.++||++++ ++|+.+... .+.|.++ .+.|.+.+++
T Consensus 75 -----~~~~~~~~v~~~Ptl~~f-~~g~~~~~~-----~y~G~~t-------~~~l~~fi~~ 118 (140)
T d2b5ea1 75 -----ENDVRGVVIEGYPTIVLY-PGGKKSESV-----VYQGSRS-------LDSLFDFIKE 118 (140)
T ss_dssp -----GCCCSSCCCSSSSEEEEE-CCTTSCCCC-----BCCSCCC-------HHHHHHHHHH
T ss_pred -----chhccccccccCCeEEEE-ECCEEccee-----EeCCCCC-------HHHHHHHHHH
Confidence 345678999999999999 455543221 1234444 5666666655
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.27 E-value=3.2e-12 Score=94.62 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=54.0
Q ss_pred ccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 39 ~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
.++|.+.++.|+++|||||+.+.|.|+++++...+ +.+..|+++.. ..++++|
T Consensus 12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~----i~~~~vd~~~~-----------------------~~l~~~~ 64 (96)
T d1hyua4 12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPR----IKHTAIDGGTF-----------------------QNEITER 64 (96)
T ss_dssp HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTT----EEEEEEETTTC-----------------------HHHHHHT
T ss_pred hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCCc----eEEEEEecccc-----------------------hHHHhhc
Confidence 45688889999999999999999999999876432 66666655532 6899999
Q ss_pred CcCCCCeEEEEcCCCccc
Q 016404 119 RVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~i~ 136 (390)
+|+++||+++ +|+.+
T Consensus 65 ~I~~vPt~~~---ng~~~ 79 (96)
T d1hyua4 65 NVMGVPAVFV---NGKEF 79 (96)
T ss_dssp TCCSSSEEEE---TTEEE
T ss_pred ccccccEEEE---CCEEE
Confidence 9999999855 56654
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.3e-12 Score=102.07 Aligned_cols=74 Identities=18% Similarity=0.377 Sum_probs=51.4
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH-Hc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF 279 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 279 (390)
.||+|+|+|||+||++|+.+.|.+.+..+.++. ..+ +|.|.+|.+. ...+.. .+
T Consensus 24 ~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~--~~~--fv~v~vd~~~---------------------~~~~~~~~~ 78 (135)
T d1sena_ 24 SGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHN--FVMVNLEDEE---------------------EPKDEDFSP 78 (135)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTT--SEEEEEEGGG---------------------SCSCGGGCT
T ss_pred cCCcEEEEEEecCCCCceecchhhhhhHHHHHh--cCC--cEEEeCCCCc---------------------CHHHHHHHh
Confidence 479999999999999999999998776554331 134 5555555432 011111 22
Q ss_pred cccccceEEEECCCCcEEee
Q 016404 280 NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~ 299 (390)
...++|+++++|++|+++..
T Consensus 79 ~~~~~Pt~~~~d~~G~~~~~ 98 (135)
T d1sena_ 79 DGGYIPRILFLDPSGKVHPE 98 (135)
T ss_dssp TCSCSSEEEEECTTSCBCTT
T ss_pred hcccceeEEEECCCCeEEEE
Confidence 34568999999999998865
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.23 E-value=1.8e-12 Score=93.86 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=49.4
Q ss_pred EEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCC
Q 016404 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIP 124 (390)
Q Consensus 45 vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 124 (390)
.+..||++||+||+++.|.|++++++++++ +.++.+++|.+ ..++++|+|.++|
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~-----------------------~~l~~~~~V~~~P 57 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVD-----------------------REKAIEYGLMAVP 57 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTC-----------------------GGGGGGTCSSCSS
T ss_pred EEEEEECCCCcchHHHHHHHhhhccccccc---ccccccccccc-----------------------hhhHHhcCceEeC
Confidence 355699999999999999999999999765 55666665533 5788999999999
Q ss_pred eEEEEcCCC
Q 016404 125 SLIPLASDG 133 (390)
Q Consensus 125 ~~~~~d~~G 133 (390)
|+++ +.+|
T Consensus 58 t~~~-~~~~ 65 (85)
T d1nhoa_ 58 AIAI-NGVV 65 (85)
T ss_dssp EEEE-TTTE
T ss_pred EEEE-CCcE
Confidence 9765 4444
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=4.8e-11 Score=92.42 Aligned_cols=99 Identities=7% Similarity=0.024 Sum_probs=69.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
+.+.+||.|||+||++|+. |.+.++++.+++ ...++.+..|.++... ...+.++++.|+
T Consensus 18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~-~~~~v~ia~Vd~~~~~------------------~~~n~~l~~~~~ 76 (122)
T d2c0ga2 18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHK-ATKDLLIATVGVKDYG------------------ELENKALGDRYK 76 (122)
T ss_dssp TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHH-HCSSEEEEEEEECSST------------------TCTTHHHHHHTT
T ss_pred cCCcEEEEEECCCCCcccC--HHHHHHHHHHHH-hCCCeEEEeccccccc------------------cccCHHHHHHhh
Confidence 4589999999999999994 999999998864 3466777777765310 012578999998
Q ss_pred c--cccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcC
Q 016404 281 I--KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 332 (390)
Q Consensus 281 v--~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 332 (390)
| .++||++++..++...... ...|.++ .+.|.+.+++...
T Consensus 77 i~~~~~PTi~~f~~g~~~~~~~-----~~~g~rt-------~~~l~~fv~~~~~ 118 (122)
T d2c0ga2 77 VDDKNFPSIFLFKGNADEYVQL-----PSHVDVT-------LDNLKAFVSANTP 118 (122)
T ss_dssp CCTTSCCEEEEESSSSSSEEEC-----CTTSCCC-------HHHHHHHHHHHSS
T ss_pred cccCCCCcEEEEeCCccccccc-----ccCCCCC-------HHHHHHHHHHhcC
Confidence 8 5799999996544332221 1334444 7778777776543
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.20 E-value=5.9e-12 Score=100.26 Aligned_cols=82 Identities=22% Similarity=0.401 Sum_probs=62.0
Q ss_pred eecCCCc-cccCc-cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCccee
Q 016404 28 LLSRQGK-VPLSS-CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVP 105 (390)
Q Consensus 28 l~~~~g~-~~l~~-~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 105 (390)
+..++|+ +.-.- -.++.|+|.||++||++|+.+.|.|.++++.+++.+ ..+.++.+|.+.
T Consensus 14 V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~--~~v~~~~~d~~~---------------- 75 (140)
T d2b5ea1 14 VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANAT--SDVLIAKLDHTE---------------- 75 (140)
T ss_dssp EEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHC--SSCEEEEEEGGG----------------
T ss_pred cEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccc--cceEEEeeeccc----------------
Confidence 5555666 43211 247899999999999999999999999999998754 335666666433
Q ss_pred cChhHHHHHHHhcCcCCCCeEEEEcCCCcc
Q 016404 106 FDETLHKKLRIRYRVDRIPSLIPLASDGTL 135 (390)
Q Consensus 106 ~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i 135 (390)
.++.+|+|.++||++++. +|+.
T Consensus 76 -------~~~~~~~v~~~Ptl~~f~-~g~~ 97 (140)
T d2b5ea1 76 -------NDVRGVVIEGYPTIVLYP-GGKK 97 (140)
T ss_dssp -------CCCSSCCCSSSSEEEEEC-CTTS
T ss_pred -------hhccccccccCCeEEEEE-CCEE
Confidence 456889999999999996 5644
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.16 E-value=1.9e-11 Score=103.77 Aligned_cols=115 Identities=11% Similarity=0.146 Sum_probs=89.3
Q ss_pred ccCcce-eecC--CCccccCcc-CCCEEEEEEe-cCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHH
Q 016404 22 SEGVEF-LLSR--QGKVPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF 96 (390)
Q Consensus 22 ~~~~~~-l~~~--~g~~~l~~~-~gk~vll~F~-a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 96 (390)
..+++| +.+. +|+++++++ +||+++|+|| +.|||.|..++..+++.+++|++.| ++|++||.|.. .+.++|.
T Consensus 6 d~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~--~~vigiS~Ds~-~sh~~w~ 82 (219)
T d1xcca_ 6 ATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSK-ESHDKWI 82 (219)
T ss_dssp CBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH-HHHHHHH
T ss_pred CCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc--eEEEeecCccH-hHHhHHh
Confidence 334444 5544 344899996 8999999999 9999999999999999999999988 99999999953 3334444
Q ss_pred Hh------CCCcceecChhHHHHHHHhcCcC------------CCCeEEEEcCCCcccccc
Q 016404 97 KC------MPWLAVPFDETLHKKLRIRYRVD------------RIPSLIPLASDGTLIEED 139 (390)
Q Consensus 97 ~~------~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~~~d~~G~i~~~~ 139 (390)
+. ..-+.+|+..|.+.++++.||+. ...+++++|++|+|++..
T Consensus 83 ~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~ 143 (219)
T d1xcca_ 83 EDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV 143 (219)
T ss_dssp HHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred hhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEE
Confidence 42 22367777788889999999982 236999999999987543
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.16 E-value=2.1e-11 Score=93.67 Aligned_cols=93 Identities=17% Similarity=0.326 Sum_probs=60.5
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCC-ceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH-CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 279 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (390)
.+|++||.|||+||++|+++.|.+.++++.+...... .+.+.....+ .....+
T Consensus 19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 72 (116)
T d2djja1 19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT--------------------------ANDVPD 72 (116)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT--------------------------TSCCSS
T ss_pred CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc--------------------------hhhhcc
Confidence 3589999999999999999999999999999752111 1222222222 123468
Q ss_pred cccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhcC
Q 016404 280 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 332 (390)
Q Consensus 280 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~~ 332 (390)
+|.++||++++ ++|+... ...+.|.+. .+.|.+.+++.++
T Consensus 73 ~v~~~Pti~~f-~~g~~~~-----~~~~~g~~~-------~~~l~~fi~~~~~ 112 (116)
T d2djja1 73 EIQGFPTIKLY-PAGAKGQ-----PVTYSGSRT-------VEDLIKFIAENGK 112 (116)
T ss_dssp CCSSSSEEEEE-CSSCTTS-----CCCCCCCSC-------HHHHHHHHHHTSS
T ss_pred cccCCCEEEEE-ECCccCc-----eEEecCCCC-------HHHHHHHHHHccC
Confidence 89999999999 3432111 111344444 6777777776443
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=7.6e-11 Score=95.91 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=86.0
Q ss_pred hhccCCceEE-e-CCCCeeeeccc-CCcEEEEEEc-cCCCccc-HhhHHHHHHHHHHhhcccCCce-EEEEEecCCCHHH
Q 016404 179 LAIEGRDYVL-S-RDHRKITVSEL-AGKTIGLYFG-AHWCPPC-RSFTSQLIEVYNELKTTANHCF-EVVLVSTDRDHKE 252 (390)
Q Consensus 179 ~g~~~p~f~l-~-~~g~~~~l~~~-~gk~vlv~F~-a~wC~~C-~~~~p~l~~l~~~~~~~~~~~~-~vv~v~~d~~~~~ 252 (390)
+|+.+|+|++ + .+|++++++++ +||+|||+|| +.|+|.| ..+.+.+.+.++.+.+ .+. .|+.+++|.....
T Consensus 5 VGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~---~g~~~i~~~s~~~~~~~ 81 (161)
T d1hd2a_ 5 VGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA---KGVQVVACLSVNDAFVT 81 (161)
T ss_dssp TTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHT---TTCCEEEEEESSCHHHH
T ss_pred CCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHH---cCCeEEEEEecCchhhh
Confidence 5999999999 4 56899999996 8999999998 7899999 4588889998888875 554 4556777654332
Q ss_pred HHHhhhcCC-cccccCCchHHHHHHHHcccc------c------cceEEEECCCCcEEeeC
Q 016404 253 FDLNHSIMP-WLAIPYEDRARQDLCRIFNIK------G------IPALVLIGPDGKTISTN 300 (390)
Q Consensus 253 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~------~------~P~~~lid~~G~v~~~~ 300 (390)
..+..... -..+++..|.+..+++.||+. + .-.+++|+.+|+|++..
T Consensus 82 -~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ 141 (161)
T d1hd2a_ 82 -GEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALN 141 (161)
T ss_dssp -HHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEE
T ss_pred -hhhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEE
Confidence 22222222 246777888899999999873 1 12356666799998763
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.16 E-value=4.5e-11 Score=92.59 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=60.5
Q ss_pred cCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecCh
Q 016404 30 SRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE 108 (390)
Q Consensus 30 ~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 108 (390)
.++.. +.---.+.+.+||.|||+||+||+. |.|.++++.+.+...++.+.-|+++... .
T Consensus 6 ~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~------------------~ 65 (122)
T d2c0ga2 6 DLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYG------------------E 65 (122)
T ss_dssp ECCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSST------------------T
T ss_pred EcChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccc------------------c
Confidence 34444 3333345799999999999999994 9999999998765555666666664311 1
Q ss_pred hHHHHHHHhcCc--CCCCeEEEEcCCC
Q 016404 109 TLHKKLRIRYRV--DRIPSLIPLASDG 133 (390)
Q Consensus 109 ~~~~~l~~~~~v--~~~P~~~~~d~~G 133 (390)
..+..++.+|++ .++||++++.+++
T Consensus 66 ~~n~~l~~~~~i~~~~~PTi~~f~~g~ 92 (122)
T d2c0ga2 66 LENKALGDRYKVDDKNFPSIFLFKGNA 92 (122)
T ss_dssp CTTHHHHHHTTCCTTSCCEEEEESSSS
T ss_pred ccCHHHHHHhhcccCCCCcEEEEeCCc
Confidence 123789999988 5799999997443
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=7.5e-12 Score=99.00 Aligned_cols=80 Identities=16% Similarity=0.394 Sum_probs=56.7
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
+..+..+||+|+|+|||+||++|+.+.|.+.+..+..+.. .+ +|.|++|.+.. ..+
T Consensus 18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~-~~--fv~v~vd~~~~---------------------~~~ 73 (135)
T d1sena_ 18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS-HN--FVMVNLEDEEE---------------------PKD 73 (135)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH-TT--SEEEEEEGGGS---------------------CSC
T ss_pred HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhc-CC--cEEEeCCCCcC---------------------HHH
Confidence 4455567999999999999999999999988776544322 22 66667765432 112
Q ss_pred HH-hcCcCCCCeEEEEcCCCccccc
Q 016404 115 RI-RYRVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 115 ~~-~~~v~~~P~~~~~d~~G~i~~~ 138 (390)
.. .+...++|++++++++|+++.+
T Consensus 74 ~~~~~~~~~~Pt~~~~d~~G~~~~~ 98 (135)
T d1sena_ 74 EDFSPDGGYIPRILFLDPSGKVHPE 98 (135)
T ss_dssp GGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred HHHHhhcccceeEEEECCCCeEEEE
Confidence 22 2344578999999999998754
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.12 E-value=1.5e-10 Score=89.88 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=59.0
Q ss_pred CCcEEEEEEccCCCccc------HhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHH
Q 016404 201 AGKTIGLYFGAHWCPPC------RSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 274 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C------~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (390)
+.+.++|.|||+||++| ..+.+.+..+++.+.. .++.+..|+++. +..
T Consensus 27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~---~~v~~a~Vd~~~-----------------------~~~ 80 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED---KGVGFGLVDSEK-----------------------DAA 80 (124)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGG---GTEEEEEEETTT-----------------------SHH
T ss_pred hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhcc---CCeEEEEEEeec-----------------------ccc
Confidence 45789999999999864 2333334444444433 557777777665 478
Q ss_pred HHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 275 LCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 275 l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
++++|+|+++||++++ ++|+++. +.|.+. .+.|.+.+.+
T Consensus 81 l~~~~~I~~yPTi~~f-~~g~~~~--------y~G~r~-------~~~l~~fi~~ 119 (124)
T d1a8ya1 81 VAKKLGLTEEDSIYVF-KEDEVIE--------YDGEFS-------ADTLVEFLLD 119 (124)
T ss_dssp HHHTTTCCSTTCEEEE-ESSSEEE--------CCSCCS-------HHHHHHHHHH
T ss_pred hhhccccccCCcEEEe-ccCccEE--------eeCCCC-------HHHHHHHHHH
Confidence 9999999999999999 4666653 345554 5566666554
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.12 E-value=4.9e-11 Score=92.68 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=56.2
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhh------hhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCC
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPC------KTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMP 100 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C------~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 100 (390)
++.++.+ +.-.-.+++.++|.||+|||++| ..+.+.+..+++.+.+.+ |.++.+|++.+
T Consensus 13 V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~----v~~a~Vd~~~~---------- 78 (124)
T d1a8ya1 13 VINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG----VGFGLVDSEKD---------- 78 (124)
T ss_dssp CEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGT----EEEEEEETTTS----------
T ss_pred cEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCC----eEEEEEEeecc----------
Confidence 4444444 33222356899999999999974 334445555555555544 55555665554
Q ss_pred CcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 101 WLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
..++++|+|+++||++++. +|+.+
T Consensus 79 -----------~~l~~~~~I~~yPTi~~f~-~g~~~ 102 (124)
T d1a8ya1 79 -----------AAVAKKLGLTEEDSIYVFK-EDEVI 102 (124)
T ss_dssp -----------HHHHHTTTCCSTTCEEEEE-SSSEE
T ss_pred -----------cchhhccccccCCcEEEec-cCccE
Confidence 6899999999999999996 67655
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.12 E-value=4.2e-11 Score=98.07 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=59.1
Q ss_pred ecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHH
Q 016404 197 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 276 (390)
Q Consensus 197 l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (390)
+.+++++++++.||++||++|+.++|.|.++++.++ ++.+..|+.|.+ .+..
T Consensus 49 l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-----~~~~~~i~~d~~-----------------------~~~~ 100 (166)
T d1z6na1 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----NIELAIISKGRA-----------------------EDDL 100 (166)
T ss_dssp HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----TEEEEEECHHHH-----------------------HHHT
T ss_pred HHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-----CCcEEEEECccC-----------------------HHHH
Confidence 456778999999999999999999999999999875 467777776642 3444
Q ss_pred HHc---cccccceEEEECCCCcEEee
Q 016404 277 RIF---NIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 277 ~~~---~v~~~P~~~lid~~G~v~~~ 299 (390)
+.| +...+|.++++|.++.+..+
T Consensus 101 ~~~~~~~~~~~p~~~~~d~~~~~~~~ 126 (166)
T d1z6na1 101 RQRLALERIAIPLVLVLDEEFNLLGR 126 (166)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEEE
T ss_pred HHHHHhccccccceeecCccchhccc
Confidence 555 44577888999988887765
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=5.4e-10 Score=90.91 Aligned_cols=115 Identities=20% Similarity=0.253 Sum_probs=77.2
Q ss_pred CcceeecCCCc-cccCccCCCEEEEEEecCCCh-hhhhhHHHHHHHHHHHhhC-CCcEEEEEEecCCC---hhHHHHHHH
Q 016404 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTR-GTELEVIFISFDHD---ENGFEEHFK 97 (390)
Q Consensus 24 ~~~~l~~~~g~-~~l~~~~gk~vll~F~a~~C~-~C~~~~p~l~~~~~~~~~~-~~~~~vv~v~~d~~---~~~~~~~~~ 97 (390)
+.++|.|.+|+ +++++++||++||.||.+||+ .|......+..+...+... ...+.+..++.+.. .+....+..
T Consensus 7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
T d2b7ka1 7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 86 (169)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence 35779999999 999999999999999999996 5666666776666665442 22356666666543 223333333
Q ss_pred hC--CCcceecChhHHHHHHHhc----------------CcCCCCeEEEEcCCCccccc
Q 016404 98 CM--PWLAVPFDETLHKKLRIRY----------------RVDRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 98 ~~--~~~~~~~~~~~~~~l~~~~----------------~v~~~P~~~~~d~~G~i~~~ 138 (390)
.. .|..+.............+ .+.+.|+++|+|++|+++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~ 145 (169)
T d2b7ka1 87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA 145 (169)
T ss_dssp TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEE
Confidence 22 2344444444334444333 45678999999999999854
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.4e-10 Score=91.15 Aligned_cols=93 Identities=14% Similarity=0.232 Sum_probs=64.8
Q ss_pred CCcEEEEEEccCCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
++|+++|+|+++||++|+.+.... .++.+.+. .++.++.|+.+... ...+++
T Consensus 41 ~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~----~~fV~~~v~~~~~e---------------------~~~~~~ 95 (147)
T d2dlxa1 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR----EHFIFWQVYHDSEE---------------------GQRYIQ 95 (147)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH----HTEEEEEEESSSHH---------------------HHHHHH
T ss_pred cCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHh----hheeEeeecccchh---------------------hhhhhh
Confidence 469999999999999999986643 44444443 34555556555432 467899
Q ss_pred HccccccceEEEECC-CCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHH
Q 016404 278 IFNIKGIPALVLIGP-DGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK 329 (390)
Q Consensus 278 ~~~v~~~P~~~lid~-~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~ 329 (390)
.|++.++|++++||| +|+++.. +|.. ..++.+..|.+.+.+
T Consensus 96 ~y~v~~~Pti~~idp~~ge~v~~--------~~~~---~~~~fl~~L~~fl~~ 137 (147)
T d2dlxa1 96 FYKLGDFPYVSILDPRTGQKLVE--------WHQL---DVSSFLDQVTGFLGE 137 (147)
T ss_dssp HHTCCSSSEEEEECTTTCCCCEE--------ESSC---CHHHHHHHHHHHHHH
T ss_pred heecCceeEEEEEeCCCCeEecc--------cCCC---CHHHHHHHHHHHHhh
Confidence 999999999999997 5776644 3322 345566666666654
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.07 E-value=4.1e-11 Score=91.96 Aligned_cols=67 Identities=16% Similarity=0.353 Sum_probs=50.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCc--EEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTE--LEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRY 118 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (390)
.+|++||.||++||++|+++.|.|.++++.+...... +.+..... ...+.++
T Consensus 19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~ 72 (116)
T d2djja1 19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDA--------------------------TANDVPD 72 (116)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEET--------------------------TTSCCSS
T ss_pred CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEeccc--------------------------chhhhcc
Confidence 5789999999999999999999999999999765311 12222221 1233578
Q ss_pred CcCCCCeEEEEcCCCc
Q 016404 119 RVDRIPSLIPLASDGT 134 (390)
Q Consensus 119 ~v~~~P~~~~~d~~G~ 134 (390)
+|.++||++++. +|+
T Consensus 73 ~v~~~Pti~~f~-~g~ 87 (116)
T d2djja1 73 EIQGFPTIKLYP-AGA 87 (116)
T ss_dssp CCSSSSEEEEEC-SSC
T ss_pred cccCCCEEEEEE-CCc
Confidence 999999999994 553
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.9e-10 Score=90.67 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=57.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHH---HHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
...+..++|++||+|+++||++|+.+.... .++.+.++++ +-++.|+.|.++ .
T Consensus 35 ~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e---------------------~ 90 (147)
T d2dlxa1 35 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEE---------------------G 90 (147)
T ss_dssp HHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHH---------------------H
T ss_pred HHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchh---------------------h
Confidence 445556799999999999999999887644 4455555544 444445544333 3
Q ss_pred HHHHHhcCcCCCCeEEEEcC-CCccc
Q 016404 112 KKLRIRYRVDRIPSLIPLAS-DGTLI 136 (390)
Q Consensus 112 ~~l~~~~~v~~~P~~~~~d~-~G~i~ 136 (390)
..++++|++.++|+++++|+ +|+++
T Consensus 91 ~~~~~~y~v~~~Pti~~idp~~ge~v 116 (147)
T d2dlxa1 91 QRYIQFYKLGDFPYVSILDPRTGQKL 116 (147)
T ss_dssp HHHHHHHTCCSSSEEEEECTTTCCCC
T ss_pred hhhhhheecCceeEEEEEeCCCCeEe
Confidence 78899999999999999997 46665
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.94 E-value=3.2e-10 Score=92.68 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=58.7
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKL 114 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (390)
-.+..++++.+++.||++|||+|++++|.|.++++.+++ ++++.|+.|.+ ...
T Consensus 47 ~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~----~~~~~i~~d~~-----------------------~~~ 99 (166)
T d1z6na1 47 ERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN----IELAIISKGRA-----------------------EDD 99 (166)
T ss_dssp HHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT----EEEEEECHHHH-----------------------HHH
T ss_pred HHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC----CcEEEEECccC-----------------------HHH
Confidence 456778899999999999999999999999999998764 66888876632 344
Q ss_pred HHhc---CcCCCCeEEEEcCCCccc
Q 016404 115 RIRY---RVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 115 ~~~~---~v~~~P~~~~~d~~G~i~ 136 (390)
..+| +...+|.++++|.++...
T Consensus 100 ~~~~~~~~~~~~p~~~~~d~~~~~~ 124 (166)
T d1z6na1 100 LRQRLALERIAIPLVLVLDEEFNLL 124 (166)
T ss_dssp TTTTTTCSSCCSSEEEEECTTCCEE
T ss_pred HHHHHHhccccccceeecCccchhc
Confidence 4555 445678888888776554
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=1e-09 Score=93.38 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=56.3
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
++.+|||.||++||++|+.+.|.|.+++.+|+. +.++-|..+. ..+...|+
T Consensus 119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-----vkF~ki~~~~------------------------~~~~~~~~ 169 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-----VKFCKIRASN------------------------TGAGDRFS 169 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-----SEEEEEEHHH------------------------HTCSTTSC
T ss_pred CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-----ceEEEEcccc------------------------chhHHhCC
Confidence 346899999999999999999999999999863 5666665431 22446799
Q ss_pred ccccceEEEECCCCcEEee
Q 016404 281 IKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~~~P~~~lid~~G~v~~~ 299 (390)
+.++||++++ ++|+++.+
T Consensus 170 i~~lPtl~~y-k~G~~v~~ 187 (217)
T d2trcp_ 170 SDVLPTLLVY-KGGELISN 187 (217)
T ss_dssp GGGCSEEEEE-ETTEEEEE
T ss_pred CCCCCeEEEE-ECCEEEEE
Confidence 9999999999 88998876
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.84 E-value=3.4e-09 Score=86.00 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=84.8
Q ss_pred hhccCCceEE-----eCCCCeeeeccc-CCcEEEEEEc-cCCCcccH-hhHHHHHHHHHHhhcccCCceEEEEEecCCCH
Q 016404 179 LAIEGRDYVL-----SRDHRKITVSEL-AGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 250 (390)
Q Consensus 179 ~g~~~p~f~l-----~~~g~~~~l~~~-~gk~vlv~F~-a~wC~~C~-~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~ 250 (390)
+|+++|+|++ +..+++++++++ +||+|||+|| +.|++.|. +..+......+.+.+ ....+|+.|++|..
T Consensus 6 vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~--~g~~~v~~isvd~~- 82 (162)
T d1tp9a1 6 VGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS--KGVTEILCISVNDP- 82 (162)
T ss_dssp TTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH--TTCCCEEEEESSCH-
T ss_pred CCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHH--cCCcceeeeeccch-
Confidence 6999999998 223467899885 8999999888 78999995 567777787777764 13457888888753
Q ss_pred HHHHHhhhcCC-cccccCCchHHHHHHHHcccc-----------ccceEEEECCCCcEEee
Q 016404 251 KEFDLNHSIMP-WLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 299 (390)
.....+....+ ...++...|....+++.||+. ....++||| +|+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~ 142 (162)
T d1tp9a1 83 FVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA 142 (162)
T ss_dssp HHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred hhhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEE
Confidence 33333333333 245777788889999999863 235688998 8999886
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.83 E-value=5.6e-09 Score=84.70 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=81.1
Q ss_pred HhhccCCceEE-eCCC---Ceeeeccc-CCcEEEEEEc-cCCCcccHhhHHHHHHHHH-HhhcccCCceEEEEEecCCCH
Q 016404 178 LLAIEGRDYVL-SRDH---RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYN-ELKTTANHCFEVVLVSTDRDH 250 (390)
Q Consensus 178 l~g~~~p~f~l-~~~g---~~~~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~l~~l~~-~~~~~~~~~~~vv~v~~d~~~ 250 (390)
+.|+++|+|++ ...| +.++++++ +||.|||+|+ +.+.|.|..+...+...+. .+.. ...+ .++.++++ +.
T Consensus 2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~-~~~~-~vv~~~s~-d~ 78 (163)
T d1nm3a2 2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK-YGVD-DILVVSVN-DT 78 (163)
T ss_dssp CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHH-TTCC-EEEEEESS-CH
T ss_pred CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhh-hccc-ceeeeecC-CH
Confidence 56999999999 5545 47999996 8998888877 7888999998766554433 3322 1122 34444444 33
Q ss_pred HHHHHhhhcCCcccccCCchHHHHHHHHccc-----------cccceEEEECCCCcEEee
Q 016404 251 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI-----------KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-----------~~~P~~~lid~~G~v~~~ 299 (390)
.....+...+....+++..|....+++.||+ .+...++||| +|+|++.
T Consensus 79 ~~~~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~ 137 (163)
T d1nm3a2 79 FVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKM 137 (163)
T ss_dssp HHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred HHHHHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEE
Confidence 3333444444456688888888999999986 2456689998 9999876
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.71 E-value=8.2e-09 Score=79.46 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=57.4
Q ss_pred eecCCCc-cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcE--EEEEEecCCChhHHHHHHHhCCCcce
Q 016404 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL--EVIFISFDHDENGFEEHFKCMPWLAV 104 (390)
Q Consensus 28 l~~~~g~-~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~--~vv~v~~d~~~~~~~~~~~~~~~~~~ 104 (390)
+++++.. +.----+++.+||.|+++||..|.. |.++++++.+.+....+ +|-...+|++.+
T Consensus 6 ~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n-------------- 69 (122)
T d1g7ea_ 6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLN-------------- 69 (122)
T ss_dssp SCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHH--------------
T ss_pred eEECCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeecccccc--------------
Confidence 3444444 4322346899999999999988864 88999999998754222 222334455554
Q ss_pred ecChhHHHHHHHhcC--cCCCCeEEEEcCCCc
Q 016404 105 PFDETLHKKLRIRYR--VDRIPSLIPLASDGT 134 (390)
Q Consensus 105 ~~~~~~~~~l~~~~~--v~~~P~~~~~d~~G~ 134 (390)
..++.+|+ |.++||++++. +|.
T Consensus 70 -------~~l~~~~~~~I~~yPTi~~f~-~G~ 93 (122)
T d1g7ea_ 70 -------MELSEKYKLDKESYPVFYLFR-DGD 93 (122)
T ss_dssp -------HHHHHHHTCSSSSCEEEEEEE-SSC
T ss_pred -------HHHHHhhcccccCCCeEEEEe-cCc
Confidence 78888765 77999999996 554
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=1.2e-08 Score=75.47 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=47.2
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcccc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 282 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 282 (390)
-++|+.||++||++|....+.|.++...|. +..+.+|.+. +.++.++|+++
T Consensus 16 ~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--------~~~v~vd~~~---------------------~~~l~~~y~~~ 66 (100)
T d1wjka_ 16 LPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--------LQEVDITLPE---------------------NSTWYERYKFD 66 (100)
T ss_dssp CCEEEEEECSSCHHHHHHHHHTSTTSSSSE--------EEEEETTSST---------------------THHHHHHSSSS
T ss_pred CCEEEEEECCCCCChHHHHHHHHHhhhhcc--------eEEEeccccc---------------------CHHHHHHhccc
Confidence 578889999999999999998887755543 3445555442 57899999987
Q ss_pred ccceEEEECCCCcEEee
Q 016404 283 GIPALVLIGPDGKTIST 299 (390)
Q Consensus 283 ~~P~~~lid~~G~v~~~ 299 (390)
+|+++ + +|+.+..
T Consensus 67 -VPvl~-i--dg~~~~~ 79 (100)
T d1wjka_ 67 -IPVFH-L--NGQFLMM 79 (100)
T ss_dssp -CSEEE-E--SSSEEEE
T ss_pred -CCcee-e--cCceEEe
Confidence 99765 4 5666543
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.64 E-value=4.8e-08 Score=74.98 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=62.0
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEe---cCCCHHHHHHhhhcCCcccccCCchHHHHHHH
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS---TDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 277 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (390)
+++.+||.|+++||..|.. |.+.++++.+.+ ..+.-+-.|. +|.+. +..++.
T Consensus 20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~--~~~~~~~~V~~~~vd~~~---------------------n~~l~~ 74 (122)
T d1g7ea_ 20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSAS--SDDLLVAEVGISDYGDKL---------------------NMELSE 74 (122)
T ss_dssp GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGG--CSSEEEEEEESCCTTSCH---------------------HHHHHH
T ss_pred hCCeEEEEEecCCcCcccC--HHHHHHHHHHHH--HHHHhhhccceeeccccc---------------------cHHHHH
Confidence 4589999999999988764 889999999975 1333222333 34432 577888
Q ss_pred Hcc--ccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHhc
Q 016404 278 IFN--IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 331 (390)
Q Consensus 278 ~~~--v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~~ 331 (390)
.|+ |.++||++++ ++|+.. ....+.|.++ .+.|.+.+++.+
T Consensus 75 ~~~~~I~~yPTi~~f-~~G~~~-----~~~~y~G~rt-------~~~l~~fi~~~~ 117 (122)
T d1g7ea_ 75 KYKLDKESYPVFYLF-RDGDFE-----NPVPYSGAVK-------VGAIQRWLKGQG 117 (122)
T ss_dssp HHTCSSSSCEEEEEE-ESSCCC-----CCEEEESCCC-------HHHHHHHHHTTS
T ss_pred hhcccccCCCeEEEE-ecCccc-----CceecCCCCC-------HHHHHHHHHhcc
Confidence 765 7799999999 444321 1112345555 778888887643
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.60 E-value=5.3e-09 Score=88.83 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=54.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
++.+|+|.||++||++|+.+.|.|.+++.+|.+ +.++-|+.+ . ..+...|++
T Consensus 119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~----vkF~ki~~~--~----------------------~~~~~~~~i 170 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM----VKFCKIRAS--N----------------------TGAGDRFSS 170 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT----SEEEEEEHH--H----------------------HTCSTTSCG
T ss_pred CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc----ceEEEEccc--c----------------------chhHHhCCC
Confidence 456999999999999999999999999998865 334444332 2 123467999
Q ss_pred CCCCeEEEEcCCCccccc
Q 016404 121 DRIPSLIPLASDGTLIEE 138 (390)
Q Consensus 121 ~~~P~~~~~d~~G~i~~~ 138 (390)
.++||+++|. +|+++.+
T Consensus 171 ~~lPtl~~yk-~G~~v~~ 187 (217)
T d2trcp_ 171 DVLPTLLVYK-GGELISN 187 (217)
T ss_dssp GGCSEEEEEE-TTEEEEE
T ss_pred CCCCeEEEEE-CCEEEEE
Confidence 9999999994 8988754
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=5.6e-08 Score=78.45 Aligned_cols=110 Identities=19% Similarity=0.198 Sum_probs=79.7
Q ss_pred ceeec-CCCc-cccCcc-CCCEEEEEEe-cCCChhh-hhhHHHHHHHHHHHhhCCCcEE-EEEEecCCChhHHHHHHHhC
Q 016404 26 EFLLS-RQGK-VPLSSC-GGKTICLFFS-ANWCRPC-KTFTPQLVQLYDTLRTRGTELE-VIFISFDHDENGFEEHFKCM 99 (390)
Q Consensus 26 ~~l~~-~~g~-~~l~~~-~gk~vll~F~-a~~C~~C-~~~~p~l~~~~~~~~~~~~~~~-vv~v~~d~~~~~~~~~~~~~ 99 (390)
+.|.+ .+|+ ++++++ +||+|+|+|| +.|+|.| ..+.+.+.+.++.+.+.| .+ |+.+++| +......+...+
T Consensus 12 f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g--~~~i~~~s~~-~~~~~~~~~~~~ 88 (161)
T d1hd2a_ 12 VEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVN-DAFVTGEWGRAH 88 (161)
T ss_dssp CEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESS-CHHHHHHHHHHT
T ss_pred eEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcC--CeEEEEEecC-chhhhhhhhhhc
Confidence 34765 4577 999995 8999999999 8899999 568888999999998876 44 4456655 555556666655
Q ss_pred CC-cceecChhHHHHHHHhcCcCC------------CCeEEEEcCCCccccc
Q 016404 100 PW-LAVPFDETLHKKLRIRYRVDR------------IPSLIPLASDGTLIEE 138 (390)
Q Consensus 100 ~~-~~~~~~~~~~~~l~~~~~v~~------------~P~~~~~d~~G~i~~~ 138 (390)
.. ..+++..|.+.++++.||+.. .-..++++.+|+|.+.
T Consensus 89 ~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~ 140 (161)
T d1hd2a_ 89 KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL 140 (161)
T ss_dssp TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEE
T ss_pred ccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEE
Confidence 43 357777788899999999731 1334555569988753
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=1e-07 Score=70.19 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=45.4
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
...++++.||++||++|+...+.|+++... +....+.+|.+.+ .++.++|++
T Consensus 14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~-------~~~~~v~vd~~~~---------------------~~l~~~y~~ 65 (100)
T d1wjka_ 14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDR-------FILQEVDITLPEN---------------------STWYERYKF 65 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHHHTSTTSSS-------SEEEEEETTSSTT---------------------HHHHHHSSS
T ss_pred CCCCEEEEEECCCCCChHHHHHHHHHhhhh-------cceEEEecccccC---------------------HHHHHHhcc
Confidence 356789999999999999999888777554 3455566665554 689999998
Q ss_pred CCCCeEEE
Q 016404 121 DRIPSLIP 128 (390)
Q Consensus 121 ~~~P~~~~ 128 (390)
+ +|++++
T Consensus 66 ~-VPvl~i 72 (100)
T d1wjka_ 66 D-IPVFHL 72 (100)
T ss_dssp S-CSEEEE
T ss_pred c-CCceee
Confidence 7 997654
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.08 E-value=3.2e-06 Score=67.94 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=70.7
Q ss_pred cccCcc-CCCEEEEEEe-cCCChhhhhhHHHHHHHH-HHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHH
Q 016404 35 VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLY-DTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLH 111 (390)
Q Consensus 35 ~~l~~~-~gk~vll~F~-a~~C~~C~~~~p~l~~~~-~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (390)
++|+++ +||+|||+|| +.+.|.|..+...+...+ +.+...+. -.++.++.+ +....+++.+.+.-..+++..+..
T Consensus 23 ~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~-~~vv~~~s~-d~~~~~a~~~~~~~~~~~llsD~~ 100 (163)
T d1nm3a2 23 VTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGV-DDILVVSVN-DTFVMNAWKEDEKSENISFIPDGN 100 (163)
T ss_dssp EEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTC-CEEEEEESS-CHHHHHHHHHHTTCTTSEEEECTT
T ss_pred EEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcc-cceeeeecC-CHHHHHHHhhhhccCceeeeccCC
Confidence 999995 9999999998 889999988776554443 33333331 234555544 455566676766667788877777
Q ss_pred HHHHHhcCcC-----------CCCeEEEEcCCCccccc
Q 016404 112 KKLRIRYRVD-----------RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 112 ~~l~~~~~v~-----------~~P~~~~~d~~G~i~~~ 138 (390)
..+++.||+. .....+++| +|+|.+.
T Consensus 101 ~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~ 137 (163)
T d1nm3a2 101 GEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKM 137 (163)
T ss_dssp SHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred hHHHHHhhhhccccccccccccceEEEEEe-CCEEEEE
Confidence 8999999862 345688888 9988754
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=98.07 E-value=5.5e-06 Score=66.41 Aligned_cols=106 Identities=19% Similarity=0.243 Sum_probs=79.0
Q ss_pred cCCCc-cccCcc-CCCEEEEEEe-cCCChhhh-hhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC-cce
Q 016404 30 SRQGK-VPLSSC-GGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW-LAV 104 (390)
Q Consensus 30 ~~~g~-~~l~~~-~gk~vll~F~-a~~C~~C~-~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~-~~~ 104 (390)
+..++ ++++++ +||+|+|+|| +.|++.|. ...+......+.++..+. .+|+.|++| +....++|....+. ..+
T Consensus 21 ~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~-~~v~~isvd-~~~~~~~~~~~~~~~~~~ 98 (162)
T d1tp9a1 21 QDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGV-TEILCISVN-DPFVMKAWAKSYPENKHV 98 (162)
T ss_dssp TSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTC-CCEEEEESS-CHHHHHHHHHTCTTCSSE
T ss_pred CCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCC-cceeeeecc-chhhhhhhhhhccccccc
Confidence 33455 999885 9999999999 88999994 677888888887777641 358888887 55567777776663 457
Q ss_pred ecChhHHHHHHHhcCcC-----------CCCeEEEEcCCCccccc
Q 016404 105 PFDETLHKKLRIRYRVD-----------RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 105 ~~~~~~~~~l~~~~~v~-----------~~P~~~~~d~~G~i~~~ 138 (390)
++..+....+++.||+. .--..+++| +|+|.+.
T Consensus 99 ~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~ 142 (162)
T d1tp9a1 99 KFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA 142 (162)
T ss_dssp EEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred ccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEE
Confidence 77777788999999963 124567888 8987753
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=2.3e-05 Score=63.10 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=60.9
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCC---CH-------------HHHHHhhhcC----
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH-------------KEFDLNHSIM---- 260 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~---~~-------------~~~~~~~~~~---- 260 (390)
..+++|+.|+.+.||+|+++.+.+.++.+. .++.++++.+.- +. ..+...+...
T Consensus 35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~------~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~ 108 (169)
T d1v58a1 35 DAPVIVYVFADPFCPYCKQFWQQARPWVDS------GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKL 108 (169)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHT------TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCC
T ss_pred CCCEEEEEEECCCCcchHHHHHHHHHHHhc------cceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcc
Confidence 347889999999999999999998887654 447777776531 11 1111221111
Q ss_pred CcccccCC-------chHHHHHHHHccccccceEEEECCCCcEEee
Q 016404 261 PWLAIPYE-------DRARQDLCRIFNIKGIPALVLIGPDGKTIST 299 (390)
Q Consensus 261 ~~~~~~~~-------~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 299 (390)
+....... .+.+..+++.+||.++|++++.|++|++...
T Consensus 109 ~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~ 154 (169)
T d1v58a1 109 KLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQA 154 (169)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEe
Confidence 10111111 2345678889999999999999999987655
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=1.9e-05 Score=62.75 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=54.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec--CC--CH---------------HHHHHhhhcCC
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST--DR--DH---------------KEFDLNHSIMP 261 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~--d~--~~---------------~~~~~~~~~~~ 261 (390)
.+|.+|+.|+..-||+|+++.|.+.++.+. ++.++.+.. .. .. ..+........
T Consensus 25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~-------~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (156)
T d1eeja1 25 QEKHVITVFTDITCGYCHKLHEQMADYNAL-------GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS 97 (156)
T ss_dssp TCCEEEEEEECTTCHHHHHHHTTHHHHHHT-------TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc-------CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccc
Confidence 358899999999999999999999887542 344555543 11 10 11222221111
Q ss_pred --cccccCCchHHHHHHHHccccccceEEEECCCCcEE
Q 016404 262 --WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 297 (390)
Q Consensus 262 --~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 297 (390)
..........+..+++.+||+++|++++ .||+++
T Consensus 98 ~~~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v 133 (156)
T d1eeja1 98 VAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLV 133 (156)
T ss_dssp CCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEE
T ss_pred cchhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEe
Confidence 1111123345678999999999999665 457664
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=3.7e-05 Score=61.86 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=64.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---C-------------hhHHHHHHHh
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---D-------------ENGFEEHFKC 98 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~-------------~~~~~~~~~~ 98 (390)
+....-..+.+++.|+.+.||+|+++.+.++++.+.. ++.++++.+.. + ...+..+...
T Consensus 29 i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~ 103 (169)
T d1v58a1 29 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSG-----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEA 103 (169)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT-----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHH
T ss_pred ceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhcc-----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHH
Confidence 5556666789999999999999999999998876532 27788887642 1 1122222221
Q ss_pred CC-----CcceecC------hhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 99 MP-----WLAVPFD------ETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 99 ~~-----~~~~~~~------~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
.. +..-... .+.+..+++.+|++++|++++.|++|++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~ 152 (169)
T d1v58a1 104 SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQ 152 (169)
T ss_dssp TTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEE
T ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE
Confidence 11 1100011 23456788899999999999999888654
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.89 E-value=2.7e-05 Score=61.32 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=60.9
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec--CC---CH-HH-------------HHHhhhc--C
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST--DR---DH-KE-------------FDLNHSI--M 260 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~--d~---~~-~~-------------~~~~~~~--~ 260 (390)
+|.+|+.|+..-||+|+++.+.+.++.+.. ..++.+.. .. .. .. +...... .
T Consensus 26 ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~ 98 (150)
T d1t3ba1 26 EKHVVTVFMDITCHYCHLLHQQLKEYNDLG-------ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 98 (150)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHTT-------EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHhccC-------ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccc
Confidence 478899999999999999999998886542 34444433 21 10 00 1111110 0
Q ss_pred CcccccCCchHHHHHHHHccccccceEEEECCCCcEEeeCcchhhhhcCccCCCCChhhHHHHHHHHHHh
Q 016404 261 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 330 (390)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~l~~~~~~~ 330 (390)
......-..+.+..+++.+||+++|++++. ||+++ .|... .++|.+.+++.
T Consensus 99 ~~~~~~~~i~~~~~la~~lGv~GTPt~~~~--nG~~i----------~G~~~-------~~~l~~~l~~~ 149 (150)
T d1t3ba1 99 KEVKTPNIVKKHYELGIQFGVRGTPSIVTS--TGELI----------GGYLK-------PADLLRALEET 149 (150)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEECT--TSCCC----------CSCCC-------HHHHHHHHHHC
T ss_pred cchhhhhHHHHHHHHHHhcCcCCCCEEEEc--CCcEe----------cCCCC-------HHHHHHHHHhh
Confidence 011111123356789999999999987764 56543 34443 56666666653
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.87 E-value=7e-05 Score=60.09 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=71.3
Q ss_pred Ceeeeccc-CCcEEEEEE-ccCCCcccHh-hHHHHHHHHHHh-hcccCCce-EEEEEecCCCHHHHHHhhhcCCcccccC
Q 016404 193 RKITVSEL-AGKTIGLYF-GAHWCPPCRS-FTSQLIEVYNEL-KTTANHCF-EVVLVSTDRDHKEFDLNHSIMPWLAIPY 267 (390)
Q Consensus 193 ~~~~l~~~-~gk~vlv~F-~a~wC~~C~~-~~p~l~~l~~~~-~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~~~~~ 267 (390)
++++++++ +||.|||.+ -+..-|.|.. .+|.+.+.++++ ++ .++ +|+.+++|. .-....+.+.++...+.+
T Consensus 32 ~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~---~gvd~I~~iSvnD-~fv~~aW~~~~~~~~I~~ 107 (179)
T d1xiya1 32 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKE---NNFDDIYCITNND-IYVLKSWFKSMDIKKIKY 107 (179)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT---SCCSEEEEEESSC-HHHHHHHHHHTTCCSSEE
T ss_pred eEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHh---cCCceEEEEecCC-HHHHHHHHhhcCcceEEE
Confidence 35666665 777665554 4778888955 699999999998 43 444 789999875 333333333344445677
Q ss_pred CchHHHHHHHHcccc-----------ccceEEEECCCCcEEeeC
Q 016404 268 EDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN 300 (390)
Q Consensus 268 ~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~ 300 (390)
..|.+.++++.+|+. +....++++ +|+|.+..
T Consensus 108 lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~ 150 (179)
T d1xiya1 108 ISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF 150 (179)
T ss_dssp EECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred eeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEE
Confidence 888899999999862 345578887 89988763
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=3.1e-05 Score=61.46 Aligned_cols=94 Identities=19% Similarity=0.371 Sum_probs=60.0
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---Chh----------------HHHHH
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DEN----------------GFEEH 95 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~~~----------------~~~~~ 95 (390)
+.+..-.+|.+++.|+.+-||+|+++.|.+.++.+ .+ +.++++.+-- ... .+...
T Consensus 19 iv~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----~~--~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 92 (156)
T d1eeja1 19 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LG--ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDV 92 (156)
T ss_dssp EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred eeecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhc----cC--ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHH
Confidence 44555568999999999999999999999988754 23 5566665421 111 11111
Q ss_pred HHhCCC--cceecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 96 FKCMPW--LAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 96 ~~~~~~--~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
...... .........+..+++.+|++++|++++. +|+++
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~~--nG~~v 133 (156)
T d1eeja1 93 MAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGTLV 133 (156)
T ss_dssp HTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSCEE
T ss_pred HhccccchhhhcchHHHHHHHHHHcCCcCCCEEEEe--CCeEe
Confidence 111111 1111235577889999999999997653 57654
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.69 E-value=4.3e-05 Score=60.12 Aligned_cols=94 Identities=21% Similarity=0.360 Sum_probs=59.0
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCC---ChhHHHH---HH------------
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEE---HF------------ 96 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~---~~~~~~~---~~------------ 96 (390)
+....-.+|.+++.|+.+.||+|+++.+.+.++.+. + ..++++.... ....... ..
T Consensus 19 ~i~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~ 92 (150)
T d1t3ba1 19 IVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL----G--ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEA 92 (150)
T ss_dssp EEECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT----T--EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHH
T ss_pred eEECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc----C--ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhH
Confidence 445555689999999999999999999999887653 2 4566655421 1111110 00
Q ss_pred Hh---CCCcceecChhHHHHHHHhcCcCCCCeEEEEcCCCccc
Q 016404 97 KC---MPWLAVPFDETLHKKLRIRYRVDRIPSLIPLASDGTLI 136 (390)
Q Consensus 97 ~~---~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~~G~i~ 136 (390)
.. .......-....+..+++.+||+++|++++. +|+++
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~~--nG~~i 133 (150)
T d1t3ba1 93 EKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVTS--TGELI 133 (150)
T ss_dssp HTTCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEECT--TSCCC
T ss_pred hhhccccchhhhhHHHHHHHHHHhcCcCCCCEEEEc--CCcEe
Confidence 01 0111111124467889999999999998874 57654
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.54 E-value=0.00062 Score=54.22 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=42.4
Q ss_pred cccCccCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016404 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 35 ~~l~~~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
+.+.+-..++.++.|+...||+|.++.+.+.++.+++.+.+ .+.++.+...
T Consensus 17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 67 (172)
T d1z6ma1 17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLFD 67 (172)
T ss_dssp EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEECC
T ss_pred CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcccc-ceeeeecccc
Confidence 77777778999999999999999999999999999987653 3666666653
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.38 E-value=0.00058 Score=54.39 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=40.3
Q ss_pred eeeecccCCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec
Q 016404 194 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246 (390)
Q Consensus 194 ~~~l~~~~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~ 246 (390)
.+.+.+-.+++.|+.|+...||+|+++.+.+.++.+++.+ ...+.++.+..
T Consensus 16 ~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 66 (172)
T d1z6ma1 16 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVK--SGKVERIIKLF 66 (172)
T ss_dssp SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH--TTSEEEEEEEC
T ss_pred CCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcc--ccceeeeeccc
Confidence 3445555568899999999999999999999999999874 24566766665
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.20 E-value=0.00098 Score=53.37 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=33.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEec
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 246 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~ 246 (390)
.++++||.|+...||+|+.+.+.+..+.+++. .+..++...+
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~----~~~~~~~~~~ 58 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP----EGAKFQKNHV 58 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSC----TTCEEEEEEC
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcc----cccceeEEec
Confidence 45889999999999999999999999999886 3444554443
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.11 E-value=0.00084 Score=53.56 Aligned_cols=101 Identities=13% Similarity=0.195 Sum_probs=75.6
Q ss_pred cccCcc-CCCEEEEEEe-cCCChhhh-hhHHHHHHHHHHH-hhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhH
Q 016404 35 VPLSSC-GGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTL-RTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETL 110 (390)
Q Consensus 35 ~~l~~~-~gk~vll~F~-a~~C~~C~-~~~p~l~~~~~~~-~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 110 (390)
++++++ +||.|+|++. +..-|.|. .+.|.+.+.++++ +..|.+ +|+.+++| +.-..++|.+++....+.+..|.
T Consensus 34 ~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd-~I~~iSvn-D~fv~~aW~~~~~~~~I~~lsD~ 111 (179)
T d1xiya1 34 IDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD-DIYCITNN-DIYVLKSWFKSMDIKKIKYISDG 111 (179)
T ss_dssp EEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS-EEEEEESS-CHHHHHHHHHHTTCCSSEEEECT
T ss_pred eeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCc-eEEEEecC-CHHHHHHHHhhcCcceEEEeeCC
Confidence 566665 8888777766 67889994 4799999999998 566622 79999987 66677888887776667787888
Q ss_pred HHHHHHhcCcC-----------CCCeEEEEcCCCccccc
Q 016404 111 HKKLRIRYRVD-----------RIPSLIPLASDGTLIEE 138 (390)
Q Consensus 111 ~~~l~~~~~v~-----------~~P~~~~~d~~G~i~~~ 138 (390)
+.++++.||+. .--..++++ +|.|.+-
T Consensus 112 ~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~ 149 (179)
T d1xiya1 112 NSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKM 149 (179)
T ss_dssp TSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEE
T ss_pred chHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEE
Confidence 89999999863 123456776 7877643
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0012 Score=53.28 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=33.6
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d 247 (390)
.++++|+.|+.-.||+|+.+.+.+..+.+..+. ...++.++...+.
T Consensus 17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 62 (188)
T d1fvka_ 17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKK-LPEGVKMTKYHVN 62 (188)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTT-SCTTCCEEEEECS
T ss_pred CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhc-cCCceEEEEEecC
Confidence 467889999999999999999988666554432 2345666666653
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=96.96 E-value=0.00099 Score=53.34 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=34.2
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEec
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~ 85 (390)
.++++++.|+...||+|+.+.+.+.++.+++.+. +.++...+
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~---~~~~~~~~ 58 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG---AKFQKNHV 58 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---CEEEEEEC
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc---cceeEEec
Confidence 5788999999999999999999999999988654 44554444
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.0011 Score=54.13 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=32.2
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHH---HHHHHhhcccCCceEEEEEecC
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTD 247 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~vv~v~~d 247 (390)
.+++.|+.|+.-+||+|.++.|.|. ++.+.++ .++.++.+.+.
T Consensus 112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~----~~v~~~~~~~~ 157 (195)
T d1un2a_ 112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP----EGVKMTKYHVN 157 (195)
T ss_dssp TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC----TTCCEEEEECS
T ss_pred CCCceEEEEEecCCccccccchhhhHHHHHHhhcC----CCcEEEEEecC
Confidence 4678899999999999999999775 4444444 56667766654
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00064 Score=55.00 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=35.1
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
..++++++.|+...||||+++.+.+..+.+..+.....+.++...+.
T Consensus 16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (188)
T d1fvka_ 16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 62 (188)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence 46788899999999999999999887666655443333566666654
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.71 E-value=0.0039 Score=46.10 Aligned_cols=72 Identities=28% Similarity=0.510 Sum_probs=53.5
Q ss_pred cCccCCCEEEEEEec-CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHH
Q 016404 37 LSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLR 115 (390)
Q Consensus 37 l~~~~gk~vll~F~a-~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (390)
++.++..+.++.|.+ ..|+.|..+...++++++ +.++ +++.....+..+. ..++
T Consensus 17 ~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~-lSdk---i~~~~~~~~~~e~---------------------~~~~ 71 (119)
T d1a8la1 17 FSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSE-LTDK---LSYEIVDFDTPEG---------------------KELA 71 (119)
T ss_dssp GGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHT-TCTT---EEEEEEETTSHHH---------------------HHHH
T ss_pred HHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHh-hCCC---eEEEEeccCcchh---------------------hhHH
Confidence 455667777777765 579999987777777655 3333 7888777775554 7899
Q ss_pred HhcCcCCCCeEEEEcCCCc
Q 016404 116 IRYRVDRIPSLIPLASDGT 134 (390)
Q Consensus 116 ~~~~v~~~P~~~~~d~~G~ 134 (390)
+.|++...|++.+.+ +|+
T Consensus 72 ~~~~ver~Ps~~i~~-~g~ 89 (119)
T d1a8la1 72 KRYRIDRAPATTITQ-DGK 89 (119)
T ss_dssp HHTTCCSSSEEEEEE-TTB
T ss_pred HhhccccCceEEEec-CCc
Confidence 999999999999987 453
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=96.54 E-value=0.0033 Score=42.28 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=37.5
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++-|+.+||++|.+....|.+ .+ +.+..+.+|.+.+ .....+.+|.+++|.
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~-------~~--i~~~~~~i~~~~~--------------------~~~~~~~~g~~tvP~ 53 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR-------AG--LAYNTVDISLDDE--------------------ARDYVMALGYVQAPV 53 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHH--------------------HHHHHHHTTCBCCCE
T ss_pred EEEEeCCCChhHHHHHHHHHH-------cC--CceEEEEccCCHH--------------------HHHHHHHhCCCCcCE
Confidence 567889999999987665543 34 5577777776654 134446678899998
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 54 i~i 56 (74)
T d1r7ha_ 54 VEV 56 (74)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: ZZ domain domain: Zinc finger ZZ-type-containing protein 3, ZZZ3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.00046 Score=45.89 Aligned_cols=33 Identities=21% Similarity=0.605 Sum_probs=28.2
Q ss_pred CceeecccCCC-CceEEEEcCCC----CCCCccccccc
Q 016404 353 KAYVCDCCKMR-GRFWAFSCDVC----NYDLHPKCVEG 385 (390)
Q Consensus 353 ~~~iC~~C~e~-g~~~~~~~~~~----~~~~~~~~~~~ 385 (390)
..+.|++|++. -.|-||+|.+| ||||...|-..
T Consensus 13 ~~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~ 50 (69)
T d2fc7a1 13 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC 50 (69)
T ss_dssp SSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred CCeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcC
Confidence 35789999996 58889999999 89999999653
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=96.29 E-value=0.006 Score=40.90 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=36.6
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.|..+||++|.+....|.+ .++.+..+.++.+.+ .....+.+|..++|
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~----------~~i~~~~~~i~~~~~--------------------~~~~~~~~g~~tvP 52 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR----------AGLAYNTVDISLDDE--------------------ARDYVMALGYVQAP 52 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH----------TTCCCEEEETTTCHH--------------------HHHHHHHTTCBCCC
T ss_pred EEEEeCCCChhHHHHHHHHHH----------cCCceEEEEccCCHH--------------------HHHHHHHhCCCCcC
Confidence 456889999999987766543 344566667776532 23445667899999
Q ss_pred eEEE
Q 016404 286 ALVL 289 (390)
Q Consensus 286 ~~~l 289 (390)
.+++
T Consensus 53 ~i~i 56 (74)
T d1r7ha_ 53 VVEV 56 (74)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8654
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0061 Score=41.13 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=36.1
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|+.+||++|.+....|.+ .+ +....++++.+.+. ....+..|.+.+|.
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~-------~~--i~y~~~~i~~~~~~--------------------~~~~~~~g~~tvP~ 53 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMEN-------RG--FDFEMINVDRVPEA--------------------AEALRAQGFRQLPV 53 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHH-------TT--CCCEEEETTTCHHH--------------------HHHHHHTTCCSSCE
T ss_pred EEEEeCCCCccHHHHHHHHHh-------cC--ceeEEEeecCCHHH--------------------HHHHHhcCCCCCCE
Confidence 456789999999986665533 34 45666677765531 23335578899999
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 54 i~i 56 (76)
T d1h75a_ 54 VIA 56 (76)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.05 E-value=0.0031 Score=45.74 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=38.3
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++.|+.+|||+|.+....|.++.-+ ...++++-++.+.+...++ ..+.+..|...+|.
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~~----~~~~~~~e~d~~~d~~~~~------------------~~l~~~~g~~tvPq 71 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPFK----EGLLEFVDITATSDTNEIQ------------------DYLQQLTGARTVPR 71 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBC----TTSEEEEEGGGSTTHHHHH------------------HHHHHHHSCCCSCE
T ss_pred EEEEECCCCchHHHHHHHHHHhCCc----cceeeeeecccccccHHHH------------------HHHhhccCCCcCcE
Confidence 5678899999999877655543222 2224454444444433221 23344557788998
Q ss_pred EEEEcCCCccc
Q 016404 126 LIPLASDGTLI 136 (390)
Q Consensus 126 ~~~~d~~G~i~ 136 (390)
+++ +|+.+
T Consensus 72 Ifi---~g~~I 79 (105)
T d1ktea_ 72 VFI---GKECI 79 (105)
T ss_dssp EEE---TTEEE
T ss_pred EEE---CCEEE
Confidence 765 45544
|
| >d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: ZZ domain domain: CREB-binding protein, CBP species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.04 E-value=0.00051 Score=42.59 Aligned_cols=29 Identities=38% Similarity=0.886 Sum_probs=24.4
Q ss_pred ceeecccCCCCceEEEEcCCCC-CCCccccc
Q 016404 354 AYVCDCCKMRGRFWAFSCDVCN-YDLHPKCV 383 (390)
Q Consensus 354 ~~iC~~C~e~g~~~~~~~~~~~-~~~~~~~~ 383 (390)
.|.|++|+.. .+-||+|.+|. |||...|-
T Consensus 6 ~~tCd~C~~~-i~~Ry~C~~C~DfDLC~~C~ 35 (52)
T d1tota1 6 VYTCNECKHH-VETRWHCTVCEDYDLCINCY 35 (52)
T ss_dssp CEEETTTTEE-ESSEEEESSSSSCEECHHHH
T ss_pred EEECcCCCCc-CCCceECCCCCCcccHHHHh
Confidence 3679999875 35699999998 99999993
|
| >d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: ZZ domain domain: Zinc finger ZZ-type-containing protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.00093 Score=46.22 Aligned_cols=30 Identities=27% Similarity=0.638 Sum_probs=26.0
Q ss_pred ceeecccCC-CCceEEEEcCCCC-CCCccccc
Q 016404 354 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCV 383 (390)
Q Consensus 354 ~~iC~~C~e-~g~~~~~~~~~~~-~~~~~~~~ 383 (390)
...|++|+. .-.|-+|+|..|. |||...|-
T Consensus 24 ~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~ 55 (85)
T d2dipa1 24 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECF 55 (85)
T ss_dssp CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHH
T ss_pred CeECCCCCCCCcCcceEEcCCCCCccchHHHH
Confidence 457999987 4789999999995 99999993
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0038 Score=43.27 Aligned_cols=37 Identities=11% Similarity=0.261 Sum_probs=29.0
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
++-|..++||+|.+....|.++..+++. +++..++++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~~----i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERDD----FQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSS----CEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCCC----ceEEEEecC
Confidence 5678899999999998888888777764 566666654
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.84 E-value=0.022 Score=41.83 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=47.7
Q ss_pred cCCcEEEEEEcc-CCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHH
Q 016404 200 LAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 278 (390)
Q Consensus 200 ~~gk~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (390)
+++.+.|+.|-+ ..|+.|......|+++.+- .+++.+.....+... ..++++.
T Consensus 20 l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-----Sdki~~~~~~~~~~e---------------------~~~~~~~ 73 (119)
T d1a8la1 20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-----TDKLSYEIVDFDTPE---------------------GKELAKR 73 (119)
T ss_dssp CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-----CTTEEEEEEETTSHH---------------------HHHHHHH
T ss_pred CCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-----CCCeEEEEeccCcch---------------------hhhHHHh
Confidence 344555666654 5799999877777777443 256777766666543 5789999
Q ss_pred ccccccceEEEECC
Q 016404 279 FNIKGIPALVLIGP 292 (390)
Q Consensus 279 ~~v~~~P~~~lid~ 292 (390)
|++...|++.+.+.
T Consensus 74 ~~ver~Ps~~i~~~ 87 (119)
T d1a8la1 74 YRIDRAPATTITQD 87 (119)
T ss_dssp TTCCSSSEEEEEET
T ss_pred hccccCceEEEecC
Confidence 99999999998853
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=95.56 E-value=0.015 Score=38.78 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=34.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
++-|+.++||+|.+....|.+. + ++...+.+|.+.. ...+.+..+...+|.
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~-------~--i~~~~~~v~~~~~--------------------~~~~~~~~~~~tvP~ 57 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDK-------G--LSFEEIILGHDAT--------------------IVSVRAVSGRTTVPQ 57 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-------T--CCCEEEETTTTCC--------------------HHHHHHHTCCSSSCE
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CCeEEEEccCcHH--------------------HHHHHHHhCCccCCE
Confidence 4667899999999877655442 3 3455555654332 134445677889998
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 58 i~i 60 (74)
T d1nm3a1 58 VFI 60 (74)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.016 Score=38.94 Aligned_cols=54 Identities=13% Similarity=0.321 Sum_probs=35.4
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|..+||++|.+....|.+ .++.+..+.++.+.+ ..+..+..|.+++|
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~----------~~i~y~~~~i~~~~~--------------------~~~~~~~~g~~tvP 52 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMEN----------RGFDFEMINVDRVPE--------------------AAEALRAQGFRQLP 52 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHH----------TTCCCEEEETTTCHH--------------------HHHHHHHTTCCSSC
T ss_pred EEEEeCCCCccHHHHHHHHHh----------cCceeEEEeecCCHH--------------------HHHHHHhcCCCCCC
Confidence 456889999999987666633 334455566665532 12334557889999
Q ss_pred eEEE
Q 016404 286 ALVL 289 (390)
Q Consensus 286 ~~~l 289 (390)
.+++
T Consensus 53 ~i~i 56 (76)
T d1h75a_ 53 VVIA 56 (76)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9665
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.36 E-value=0.0063 Score=44.00 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=39.1
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
++.|..+|||+|.+....|.++.-.+ ..+.++-+..+.+...+. ..+.+..|...+|
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~~~-----~~~~~~e~d~~~d~~~~~------------------~~l~~~~g~~tvP 70 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPFKE-----GLLEFVDITATSDTNEIQ------------------DYLQQLTGARTVP 70 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCT-----TSEEEEEGGGSTTHHHHH------------------HHHHHHHSCCCSC
T ss_pred EEEEECCCCchHHHHHHHHHHhCCcc-----ceeeeeecccccccHHHH------------------HHHhhccCCCcCc
Confidence 45689999999998776665543222 334555554444432222 2344455778899
Q ss_pred eEEEECCCCcEE
Q 016404 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
.+++ +|+.+
T Consensus 71 qIfi---~g~~I 79 (105)
T d1ktea_ 71 RVFI---GKECI 79 (105)
T ss_dssp EEEE---TTEEE
T ss_pred EEEE---CCEEE
Confidence 8764 45544
|
| >d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: RAF-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0052 Score=38.09 Aligned_cols=34 Identities=29% Similarity=0.710 Sum_probs=27.6
Q ss_pred CCceeecccCCCCceEEEEcCCCCCCCcccccccc
Q 016404 352 AKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGI 386 (390)
Q Consensus 352 ~~~~iC~~C~e~g~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
..+-.|..|++... +.|+|++|++..|.+|+...
T Consensus 12 ~~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~v 45 (52)
T d1faqa_ 12 LKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp SSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSS
T ss_pred CCCcCCccCCCccc-cCCCcCCCCChhhhhhhccc
Confidence 35678999998542 37999999999999998753
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=95.25 E-value=0.02 Score=39.01 Aligned_cols=55 Identities=13% Similarity=0.291 Sum_probs=35.9
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|..+|||+|.+....|.+ .+ +.+..++++.+... ...+.+..|..++|.
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~-------~~--i~y~~~di~~~~~~-------------------~~~~~~~~g~~tvP~ 54 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSS-------KG--VSFQELPIDGNAAK-------------------REEMIKRSGRTTVPQ 54 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHH-------HT--CCCEEEECTTCSHH-------------------HHHHHHHHSSCCSCE
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------cC--CCeEEEeccchHHH-------------------HHHHHHHhCCCCCCe
Confidence 456788999999976654433 23 44666677654431 245556678889998
Q ss_pred EEE
Q 016404 126 LIP 128 (390)
Q Consensus 126 ~~~ 128 (390)
+++
T Consensus 55 i~i 57 (82)
T d1fova_ 55 IFI 57 (82)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Kinase suppressor of Ras, Ksr species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.25 E-value=0.0054 Score=37.42 Aligned_cols=29 Identities=28% Similarity=0.780 Sum_probs=24.9
Q ss_pred eecccCCCCceEEEEcCCCCCCCccccccc
Q 016404 356 VCDCCKMRGRFWAFSCDVCNYDLHPKCVEG 385 (390)
Q Consensus 356 iC~~C~e~g~~~~~~~~~~~~~~~~~~~~~ 385 (390)
.|..|.+.-. +.|+|++|+|-.|.+|+-.
T Consensus 16 tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~ 44 (49)
T d1kbea_ 16 VCNVCQKSMI-FGVKCKHCRLKCHNKCTKE 44 (49)
T ss_dssp CCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred Cchhhchhhh-CcCCcCCCCChHhHhhccc
Confidence 4999999663 5899999999999999763
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=94.49 E-value=0.019 Score=38.33 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=35.8
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|+.|+.++||+|.+....|.+. . +.+..+.++.+. ....+.+..+...+|
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~----~------i~~~~~~v~~~~--------------------~~~~~~~~~~~~tvP 56 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDK----G------LSFEEIILGHDA--------------------TIVSVRAVSGRTTVP 56 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH----T------CCCEEEETTTTC--------------------CHHHHHHHTCCSSSC
T ss_pred EEEEECCCCHHHHHHHHHHHHc----C------CCeEEEEccCcH--------------------HHHHHHHHhCCccCC
Confidence 4568899999999877666543 1 233344444332 023455567788899
Q ss_pred eEEEECCCCcEE
Q 016404 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
.++ + +|+.+
T Consensus 57 ~i~-i--~g~~I 65 (74)
T d1nm3a1 57 QVF-I--GGKHI 65 (74)
T ss_dssp EEE-E--TTEEE
T ss_pred EEE-E--CCEEE
Confidence 864 4 45543
|
| >d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Protein kinase c-gamma species: Rat (Rattus rattus) [TaxId: 10117]
Probab=94.43 E-value=0.013 Score=38.32 Aligned_cols=43 Identities=23% Similarity=0.633 Sum_probs=31.1
Q ss_pred ccceeec-CCCceeecccCCCCce---EEEEcCCCCCCCcccccccc
Q 016404 344 EHELKLD-MAKAYVCDCCKMRGRF---WAFSCDVCNYDLHPKCVEGI 386 (390)
Q Consensus 344 ~~~l~l~-~~~~~iC~~C~e~g~~---~~~~~~~~~~~~~~~~~~~~ 386 (390)
+|..... ...+-.|..|.+.-.| ..|+|.+|++..|.+|+...
T Consensus 8 ~H~F~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v 54 (66)
T d1tbna_ 8 KHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSV 54 (66)
T ss_dssp SCCEEECCSSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTS
T ss_pred CCceEEEeCCCCcCCcCCCCcccCcccCccccCcccCeEChHHhccc
Confidence 4444443 2345679999985443 36999999999999997643
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.29 E-value=0.062 Score=35.86 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=41.6
Q ss_pred EEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeE
Q 016404 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSL 126 (390)
Q Consensus 47 l~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 126 (390)
|...++.|+.|.+.....+++.+++. .+.++.-|. +. .++. +||+.++|.+
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~g---i~a~v~kv~---d~----------------------~ei~-~ygVmstPal 54 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKELG---IDAEFEKIK---EM----------------------DQIL-EAGLTALPGL 54 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTT---CCEEEEEEC---SH----------------------HHHH-HHTCSSSSCE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHcC---CceEEEEeC---CH----------------------HHHH-HcCCcCCCEE
Confidence 44568999999999988888777653 335665552 22 4665 5999999998
Q ss_pred EEEcCCCccc
Q 016404 127 IPLASDGTLI 136 (390)
Q Consensus 127 ~~~d~~G~i~ 136 (390)
++ ||+++
T Consensus 55 vI---dg~vv 61 (77)
T d1iloa_ 55 AV---DGELK 61 (77)
T ss_dssp EE---TTEEE
T ss_pred EE---CCEEE
Confidence 76 45555
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=94.06 E-value=0.14 Score=33.98 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=32.0
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|..|..++|+.|......|. +. .++.+.-+.++.+ .++.++|+.. +|
T Consensus 2 ltLyt~~~C~LCe~A~~~l~----~~-----~~~~~~~vdI~~d-----------------------~~l~~~y~~~-IP 48 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALA----QA-----RAGAFFSVFIDDD-----------------------AALESAYGLR-VP 48 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHH----HT-----TCCCEEEEECTTC-----------------------HHHHHHHTTT-CS
T ss_pred EEEECCCCccHHHHHHHHHH----hc-----cCCcEEEEEccCC-----------------------HHHHHHhCCe-ee
Confidence 44678999999986543332 22 2345666677653 5788889865 79
Q ss_pred eE
Q 016404 286 AL 287 (390)
Q Consensus 286 ~~ 287 (390)
.+
T Consensus 49 Vl 50 (75)
T d1ttza_ 49 VL 50 (75)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=93.75 E-value=0.018 Score=39.27 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=36.7
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccc
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 285 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 285 (390)
|..|..+|||+|.+....|.+. ++.+..+.++.+.. ....+.+..|...+|
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~----------~i~y~~~di~~~~~-------------------~~~~~~~~~g~~tvP 53 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSK----------GVSFQELPIDGNAA-------------------KREEMIKRSGRTTVP 53 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH----------TCCCEEEECTTCSH-------------------HHHHHHHHHSSCCSC
T ss_pred EEEEeCCCCHhHHHHHHHHHHc----------CCCeEEEeccchHH-------------------HHHHHHHHhCCCCCC
Confidence 3457899999999876655432 23344455554431 124566667888999
Q ss_pred eEEEECCCCcEE
Q 016404 286 ALVLIGPDGKTI 297 (390)
Q Consensus 286 ~~~lid~~G~v~ 297 (390)
.++ + +|+.+
T Consensus 54 ~i~-i--~~~~I 62 (82)
T d1fova_ 54 QIF-I--DAQHI 62 (82)
T ss_dssp EEE-E--TTEEE
T ss_pred eEE-E--CCEEE
Confidence 875 4 45543
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.043 Score=37.57 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=28.8
Q ss_pred EEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecC
Q 016404 206 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 247 (390)
Q Consensus 206 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d 247 (390)
++.|..++||+|.+....|.++...++ ++.+.-+.++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~-----~i~~~~~~~~ 39 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----DFQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS-----SCEEEEECHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCC-----CceEEEEecC
Confidence 456899999999999999998887775 3566665554
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.91 E-value=0.21 Score=33.13 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=43.1
Q ss_pred EccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccccccceEE
Q 016404 209 FGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALV 288 (390)
Q Consensus 209 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 288 (390)
..++.|+.|.+.....++..++.. -+.+|.-|. | ..++. +|||.++|.++
T Consensus 6 Vlg~gC~~C~~~~~~v~~a~~e~g----i~a~v~kv~-d------------------------~~ei~-~ygVmstPalv 55 (77)
T d1iloa_ 6 IYGTGCANCQMLEKNAREAVKELG----IDAEFEKIK-E------------------------MDQIL-EAGLTALPGLA 55 (77)
T ss_dssp EECSSSSTTHHHHHHHHHHHHHTT----CCEEEEEEC-S------------------------HHHHH-HHTCSSSSCEE
T ss_pred EeCCCCccHHHHHHHHHHHHHHcC----CceEEEEeC-C------------------------HHHHH-HcCCcCCCEEE
Confidence 348999999999888888777653 556666663 2 25666 59999999966
Q ss_pred EECCCCcEEee
Q 016404 289 LIGPDGKTIST 299 (390)
Q Consensus 289 lid~~G~v~~~ 299 (390)
+ ||+++..
T Consensus 56 I---dg~vv~~ 63 (77)
T d1iloa_ 56 V---DGELKIM 63 (77)
T ss_dssp E---TTEEEEC
T ss_pred E---CCEEEEE
Confidence 4 6888866
|
| >d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Beta-chimaerin, middle domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.048 Score=34.85 Aligned_cols=33 Identities=18% Similarity=0.496 Sum_probs=26.7
Q ss_pred CceeecccCCCC--ce-EEEEcCCCCCCCccccccc
Q 016404 353 KAYVCDCCKMRG--RF-WAFSCDVCNYDLHPKCVEG 385 (390)
Q Consensus 353 ~~~iC~~C~e~g--~~-~~~~~~~~~~~~~~~~~~~ 385 (390)
.+-.|..|.+.- .+ ..|+|.+|++-.|.+|...
T Consensus 14 ~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 49 (62)
T d1xa6a3 14 GPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKH 49 (62)
T ss_dssp SCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTT
T ss_pred CCCCCcccCccccccccCeEEcCCCCchhhHHHHhh
Confidence 456799999943 33 4899999999999999764
|
| >d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Diacylglycerol kinase delta species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.046 Score=37.35 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=26.6
Q ss_pred CCceeecccCCCCce----EEEEcCCCCCCCcccccc
Q 016404 352 AKAYVCDCCKMRGRF----WAFSCDVCNYDLHPKCVE 384 (390)
Q Consensus 352 ~~~~iC~~C~e~g~~----~~~~~~~~~~~~~~~~~~ 384 (390)
..+-.|..|++.-.+ ..|+|..|++-.|.+|..
T Consensus 36 ~~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~ 72 (84)
T d1r79a_ 36 PVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE 72 (84)
T ss_dssp CTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred CCCCCCcccCcccCCccccCcEecCcCCchhhhhhcC
Confidence 355679999995422 479999999999999965
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=91.47 E-value=0.12 Score=34.39 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=32.6
Q ss_pred EEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCe
Q 016404 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPS 125 (390)
Q Consensus 46 ll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 125 (390)
+..|+.++|+.|......+.+ . .+ +++..|+++.+ ..+.++|+.. +|.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~----~--~~--~~~~~vdI~~d-----------------------~~l~~~y~~~-IPV 49 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQ----A--RA--GAFFSVFIDDD-----------------------AALESAYGLR-VPV 49 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHH----T--TC--CCEEEEECTTC-----------------------HHHHHHHTTT-CSE
T ss_pred EEEECCCCccHHHHHHHHHHh----c--cC--CcEEEEEccCC-----------------------HHHHHHhCCe-eeE
Confidence 456789999999865443322 1 23 55777777754 4677888866 795
Q ss_pred EE
Q 016404 126 LI 127 (390)
Q Consensus 126 ~~ 127 (390)
+.
T Consensus 50 l~ 51 (75)
T d1ttza_ 50 LR 51 (75)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=91.40 E-value=0.041 Score=44.35 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=32.1
Q ss_pred cCCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecC
Q 016404 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (390)
Q Consensus 40 ~~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d 86 (390)
..+++.++.|+.-+||||.++.|.|..+.+-.+..++++.++.+.+.
T Consensus 111 ~~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~ 157 (195)
T d1un2a_ 111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 157 (195)
T ss_dssp CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred CCCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence 35788899999999999999999776433322222223566666654
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=90.78 E-value=0.14 Score=38.16 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=47.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.++++++.|+.+. .........+.+++++++++ ++++.+|.+.. ....+.||+
T Consensus 22 ~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k-----i~Fv~vd~~~~---------------------~~~l~~~gl 74 (133)
T d2djka1 22 AGIPLAYIFAETA-EERKELSDKLKPIAEAQRGV-----INFGTIDAKAF---------------------GAHAGNLNL 74 (133)
T ss_dssp TTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT-----SEEEEECTTTT---------------------GGGTTTTTC
T ss_pred CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc-----eEEEEEeHHHh---------------------HHHHHHhcC
Confidence 4778888887654 35677788999999999876 44555554332 344566777
Q ss_pred --CCCCeEEEEcCCCcc
Q 016404 121 --DRIPSLIPLASDGTL 135 (390)
Q Consensus 121 --~~~P~~~~~d~~G~i 135 (390)
...|.+++++.++..
T Consensus 75 ~~~~~P~~~i~~~~~~~ 91 (133)
T d2djka1 75 KTDKFPAFAIQEVAKNQ 91 (133)
T ss_dssp CSSSSSEEEEECTTTCC
T ss_pred CcccCCcEEEEEcCCCc
Confidence 468999999866543
|
| >d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Cysteine-rich domain superfamily: Cysteine-rich domain family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) domain: Protein kinase C-delta (PKCdelta) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.99 E-value=0.066 Score=32.46 Aligned_cols=33 Identities=27% Similarity=0.621 Sum_probs=26.6
Q ss_pred CceeecccCCCCc--e-EEEEcCCCCCCCccccccc
Q 016404 353 KAYVCDCCKMRGR--F-WAFSCDVCNYDLHPKCVEG 385 (390)
Q Consensus 353 ~~~iC~~C~e~g~--~-~~~~~~~~~~~~~~~~~~~ 385 (390)
.+-.|..|++.-. + -.|+|.+|++-.|.+|...
T Consensus 10 ~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~ 45 (50)
T d1ptqa_ 10 SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCcCCcccCCcccCcccCcEECCCCCCeeChhHccc
Confidence 4567999998443 3 3799999999999999764
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.50 E-value=0.59 Score=38.02 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=45.3
Q ss_pred cEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcc---cccCCchHHHHHHHHc
Q 016404 203 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWL---AIPYEDRARQDLCRIF 279 (390)
Q Consensus 203 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~ 279 (390)
+.||=.|.+.||+.|..-...|.+|.+. .++-.+.+.+|- +...+|. ..|......+..++.+
T Consensus 6 ~aVVElFTSqgCssCPpAd~~L~~L~~~------~~Vi~La~HVdY--------Wd~lGw~D~fa~~~~t~RQ~~Y~~~~ 71 (225)
T d2axoa1 6 KGVVELFTSQGCASCPPADEALRKMIQK------GDVVGLSYHVDY--------WNYLGWTDSLASKENTERQYGYMRAL 71 (225)
T ss_dssp CCEEEEEECTTCTTCHHHHHHHHHHHHH------TSSEEEEEECST--------TCSSSSCCTTCCHHHHHHHHHHHHHT
T ss_pred CcEEEEeeCCCCCCCHHHHHHHHHhhCC------CCEEEEEecccc--------ccccCCCCCCCCchhhHHHHHHHHhc
Confidence 5577789999999999999999988653 567777777762 1122221 1122222234566777
Q ss_pred cccccce
Q 016404 280 NIKGIPA 286 (390)
Q Consensus 280 ~v~~~P~ 286 (390)
+...+||
T Consensus 72 g~~~vyT 78 (225)
T d2axoa1 72 GRNGVYT 78 (225)
T ss_dssp TCSCCCS
T ss_pred CCCCCCc
Confidence 8887665
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=88.92 E-value=0.72 Score=33.90 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=46.7
Q ss_pred CcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHccc
Q 016404 202 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 281 (390)
Q Consensus 202 gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 281 (390)
++++++.|+... .........+.+++++|+ ..+.++.+ |.+. .....+.||+
T Consensus 23 ~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~----~ki~Fv~v--d~~~---------------------~~~~l~~~gl 74 (133)
T d2djka1 23 GIPLAYIFAETA-EERKELSDKLKPIAEAQR----GVINFGTI--DAKA---------------------FGAHAGNLNL 74 (133)
T ss_dssp TSCEEEEECSCS-SSHHHHHHHHHHHHHSST----TTSEEEEE--CTTT---------------------TGGGTTTTTC
T ss_pred CCCEEEEEeCCc-hHHHHHHHHHHHHHHHhc----CceEEEEE--eHHH---------------------hHHHHHHhcC
Confidence 467777787654 345777888899998887 44555555 4332 2344566777
Q ss_pred --cccceEEEECCCCcEEee
Q 016404 282 --KGIPALVLIGPDGKTIST 299 (390)
Q Consensus 282 --~~~P~~~lid~~G~v~~~ 299 (390)
...|.+++++.++...+.
T Consensus 75 ~~~~~P~~~i~~~~~~~~~~ 94 (133)
T d2djka1 75 KTDKFPAFAIQEVAKNQKFP 94 (133)
T ss_dssp CSSSSSEEEEECTTTCCBCC
T ss_pred CcccCCcEEEEEcCCCceec
Confidence 468999999877664443
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.14 E-value=0.38 Score=35.19 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=47.0
Q ss_pred CCCEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCc
Q 016404 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRV 120 (390)
Q Consensus 41 ~gk~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 120 (390)
.|+++++.|+.+. ..-......+.+++++++++ +.++.+ |.+. .....+.||+
T Consensus 16 ~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgk---i~Fv~~--D~~~---------------------~~~~l~~fgl 68 (125)
T d2b5ea3 16 SGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGL---MNFVSI--DARK---------------------FGRHAGNLNM 68 (125)
T ss_dssp TTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTT---CEEEEE--EHHH---------------------HTTHHHHTTC
T ss_pred cCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCe---eEEEEE--chHH---------------------hHHHHHHcCC
Confidence 5889888888764 23457788999999999876 445554 4322 2456678887
Q ss_pred C-CCCeEEEEcCCCc
Q 016404 121 D-RIPSLIPLASDGT 134 (390)
Q Consensus 121 ~-~~P~~~~~d~~G~ 134 (390)
. ..|.+++++....
T Consensus 69 ~e~~P~~~i~~~~~~ 83 (125)
T d2b5ea3 69 KEQFPLFAIHDMTED 83 (125)
T ss_dssp CSCSSEEEEEETTTT
T ss_pred CccCCcEEEEecccC
Confidence 5 4899999875543
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.83 E-value=2 Score=31.05 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=48.7
Q ss_pred CCcEEEEEEccCCCcccHhhHHHHHHHHHHhhcccCCceEEEEEecCCCHHHHHHhhhcCCcccccCCchHHHHHHHHcc
Q 016404 201 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 280 (390)
Q Consensus 201 ~gk~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (390)
.|.++++.|+.+- ..-......+.+++++|+ .++.++.+..+. ....++.||
T Consensus 16 ~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fk----gki~Fv~~D~~~-----------------------~~~~l~~fg 67 (125)
T d2b5ea3 16 SGLPLGYLFYNDE-EELEEYKPLFTELAKKNR----GLMNFVSIDARK-----------------------FGRHAGNLN 67 (125)
T ss_dssp TTSCEEEEEESSH-HHHHHHHHHHHHHHHHTT----TTCEEEEEEHHH-----------------------HTTHHHHTT
T ss_pred cCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhc----CeeEEEEEchHH-----------------------hHHHHHHcC
Confidence 4678888888763 224566778889999987 456666665432 345678888
Q ss_pred cc-ccceEEEECCCCcEEee
Q 016404 281 IK-GIPALVLIGPDGKTIST 299 (390)
Q Consensus 281 v~-~~P~~~lid~~G~v~~~ 299 (390)
+. ..|.+++++....-.+.
T Consensus 68 l~e~~P~~~i~~~~~~~ky~ 87 (125)
T d2b5ea3 68 MKEQFPLFAIHDMTEDLKYG 87 (125)
T ss_dssp CCSCSSEEEEEETTTTEEEE
T ss_pred CCccCCcEEEEecccCcccc
Confidence 75 48999998766555544
|
| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.80 E-value=0.89 Score=32.23 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=33.8
Q ss_pred CCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCCcceecChhHHHHHHHhcCcCCCCeEEEEcC
Q 016404 52 NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDETLHKKLRIRYRVDRIPSLIPLAS 131 (390)
Q Consensus 52 ~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~~~d~ 131 (390)
|.||+|.+....|.+ .+ +....+.++.+.+ ....+.+..+...+|.+++
T Consensus 28 p~Cp~c~~ak~lL~~-------~~--i~~~~~~v~~~~~-------------------~~~~l~~~t~~~TvPqIFi--- 76 (109)
T d1wika_ 28 AKCGFSKQILEILNS-------TG--VEYETFDILEDEE-------------------VRQGLKTFSNWPTYPQLYV--- 76 (109)
T ss_dssp CCSSTHHHHHHHHHH-------TC--SCEEEEESSSCHH-------------------HHHHHHHHHSCCSSCEEEC---
T ss_pred CCChHHHHHHHHHHh-------cC--CCceEEEecccHH-------------------HHHHHHHhcCCCCCCeEEE---
Confidence 789999986655432 33 3456667765543 1244555567788999875
Q ss_pred CCccc
Q 016404 132 DGTLI 136 (390)
Q Consensus 132 ~G~i~ 136 (390)
+|+.+
T Consensus 77 ~g~~I 81 (109)
T d1wika_ 77 RGDLV 81 (109)
T ss_dssp SSSEE
T ss_pred CCEEE
Confidence 45554
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=82.38 E-value=1.6 Score=35.24 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=43.9
Q ss_pred CEEEEEEecCCChhhhhhHHHHHHHHHHHhhCCCcEEEEEEecCCChhHHHHHHHhCCC---cceecChhHHHHHHHhcC
Q 016404 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPW---LAVPFDETLHKKLRIRYR 119 (390)
Q Consensus 43 k~vll~F~a~~C~~C~~~~p~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 119 (390)
+.|+=.|++.||..|......|.++.+. . ++-.+.+.+|-- .-.+| ++.|......+.+++.++
T Consensus 6 ~aVVElFTSqgCssCPpAd~~L~~L~~~--~---~Vi~La~HVdYW--------d~lGw~D~fa~~~~t~RQ~~Y~~~~g 72 (225)
T d2axoa1 6 KGVVELFTSQGCASCPPADEALRKMIQK--G---DVVGLSYHVDYW--------NYLGWTDSLASKENTERQYGYMRALG 72 (225)
T ss_dssp CCEEEEEECTTCTTCHHHHHHHHHHHHH--T---SSEEEEEECSTT--------CSSSSCCTTCCHHHHHHHHHHHHHTT
T ss_pred CcEEEEeeCCCCCCCHHHHHHHHHhhCC--C---CEEEEEeccccc--------cccCCCCCCCCchhhHHHHHHHHhcC
Confidence 5677788899999999998889888653 2 266777777620 01111 122222233356778888
Q ss_pred cCCCCe
Q 016404 120 VDRIPS 125 (390)
Q Consensus 120 v~~~P~ 125 (390)
...+||
T Consensus 73 ~~~vyT 78 (225)
T d2axoa1 73 RNGVYT 78 (225)
T ss_dssp CSCCCS
T ss_pred CCCCCc
Confidence 876544
|
| >d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: RNA polymerase subunits family: RBP12 subunit of RNA polymerase II domain: RBP12 subunit of RNA polymerase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.14 E-value=0.16 Score=29.59 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=21.4
Q ss_pred CceeecccCC---CCceEEEEcCCCCCCCc
Q 016404 353 KAYVCDCCKM---RGRFWAFSCDVCNYDLH 379 (390)
Q Consensus 353 ~~~iC~~C~e---~g~~~~~~~~~~~~~~~ 379 (390)
-.|+|.+|.. -..+=.-+|++|+|.+=
T Consensus 3 v~YiCgeCg~~~~l~~~d~irCreCG~RIl 32 (46)
T d1twfl_ 3 LKYICAECSSKLSLSRTDAVRCKDCGHRIL 32 (46)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred eEEEcccCCCceEeCCCCcEEeccCCcEEE
Confidence 4799999987 45666789999998763
|