Query 016405
Match_columns 390
No_of_seqs 191 out of 496
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03619 Solute_trans_a: Organ 100.0 1.3E-79 2.9E-84 595.9 29.6 267 39-323 1-274 (274)
2 KOG2641 Predicted seven transm 100.0 1.4E-78 3E-83 606.0 31.8 322 42-388 34-362 (386)
3 KOG3979 FGF receptor activatin 68.8 31 0.00068 34.5 8.9 119 4-129 140-260 (296)
4 COG1480 Predicted membrane-ass 59.9 73 0.0016 35.5 10.4 29 236-265 459-487 (700)
5 COG3833 MalG ABC-type maltose 44.7 3.3E+02 0.0072 27.1 11.8 125 46-212 80-213 (282)
6 PF06609 TRI12: Fungal trichot 40.7 5.4E+02 0.012 28.4 14.0 66 193-259 241-308 (599)
7 PRK11056 hypothetical protein; 35.6 1.1E+02 0.0025 26.6 5.8 55 49-103 37-91 (120)
8 KOG2568 Predicted membrane pro 32.9 6.7E+02 0.015 27.2 22.4 15 175-189 301-315 (518)
9 PF07226 DUF1422: Protein of u 30.4 1.8E+02 0.0039 25.3 6.2 55 49-103 37-91 (117)
10 TIGR03068 srtB_sig_NPQTN sorta 26.1 1.1E+02 0.0025 20.6 3.3 26 33-58 3-28 (33)
11 PF08285 DPM3: Dolichol-phosph 25.2 1.4E+02 0.003 24.7 4.5 40 74-116 31-70 (91)
12 PF00558 Vpu: Vpu protein; In 24.9 95 0.002 25.3 3.4 35 46-82 8-42 (81)
13 KOG2927 Membrane component of 24.8 41 0.00088 34.5 1.5 8 232-239 244-251 (372)
14 PF14333 DUF4389: Domain of un 24.2 2E+02 0.0042 23.0 5.1 39 75-127 2-40 (80)
15 PF10277 Frag1: Frag1/DRAM/Sfk 23.4 5.4E+02 0.012 23.1 10.1 91 35-127 116-207 (215)
16 PF07301 DUF1453: Protein of u 21.8 5.5E+02 0.012 23.2 8.0 69 51-126 6-74 (148)
17 PF13850 ERGIC_N: Endoplasmic 21.4 59 0.0013 26.8 1.6 32 46-77 20-51 (96)
18 PF14126 DUF4293: Domain of un 20.4 6.2E+02 0.013 22.6 11.8 52 47-102 55-108 (149)
No 1
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=1.3e-79 Score=595.92 Aligned_cols=267 Identities=42% Similarity=0.835 Sum_probs=255.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHhhhhhhhhHHHHHHHHHhhccchhhHhHHHHHHHHHHHH
Q 016405 39 VAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFAL 118 (390)
Q Consensus 39 ~~~~~a~~iag~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIRIL~mvPIYai~S~lsL~~p~~aiy~~~iRd~YEAfvi 118 (390)
|+ |++++||+|+++|+++|+++|++|++||++|++||+|+||++|+|+||++||+|+++||+++|+|++||||||+++
T Consensus 1 ~~--~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~~~~~~ir~~Yea~~l 78 (274)
T PF03619_consen 1 HT--WAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAAIYLDFIRDCYEAFVL 78 (274)
T ss_pred Cc--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhhccccCCCchhhhhccCCccccCccc---ccccccccCChhHHHHHHHhhhhhhHHH
Q 016405 119 YCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPL---NCILRDWRLGPEFYNAVKIGIVQYMILK 195 (390)
Q Consensus 119 Y~F~~lli~ylGGe~~~i~~l~~~~~~~~~~p~l~~~~~~~~~~h~~P~---~cc~~~~~~~~~fl~~~K~gVlQy~ivk 195 (390)
|+|++|+++|+|||++.++.+++ +++++|++|+ +||+|++++|++++++||+||+||+++|
T Consensus 79 y~F~~Ll~~y~gg~~~~~~~l~~----------------~~~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvr 142 (274)
T PF03619_consen 79 YSFFSLLLNYLGGEEALVEVLSG----------------KPPIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVR 142 (274)
T ss_pred HHHHHHHHHHhCCHHHHHHHhhc----------------CCCCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888753 3345688998 4566899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHH
Q 016405 196 MICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGI 275 (390)
Q Consensus 196 Pl~ai~aiIl~~~G~Y~~g~~~~~~~ylyi~ii~niS~~lALY~L~~Fy~~~k~~L~p~~P~~KFl~iK~VVFltfwQ~~ 275 (390)
|++++++++++++|.||||+++++.+|+|+++++|+|+++|||||.+||+++|++|+|+||++||+|+|+|||++|||++
T Consensus 143 pl~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ 222 (274)
T PF03619_consen 143 PLLSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGF 222 (274)
T ss_pred HHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCc---H-HHHHHHhhhhHHHHHHHHHHHHHhhccCCCcc
Q 016405 276 IVAFLFSIGAFRGSL---A-QELKTRIQDYIICIEMGIAAVVHLYVFPARPY 323 (390)
Q Consensus 276 ii~iL~~~Gvi~~~~---~-~~~~~~iq~~LICiEM~i~Ai~h~~aF~~~~Y 323 (390)
++++|.+.|++++.. + +++++++||+|+|+||+++|++|++|||++||
T Consensus 223 ii~iL~~~g~i~~~~~~~~~~~~~~~i~~~LicvEM~i~ai~~~~af~~~~y 274 (274)
T PF03619_consen 223 IISILASFGVIPCTPPWSSPEDIASGIQNFLICVEMFIFAILHRYAFPYSPY 274 (274)
T ss_pred HHHHHHHCCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999998752 2 48999999999999999999999999999998
No 2
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-78 Score=605.98 Aligned_cols=322 Identities=39% Similarity=0.676 Sum_probs=286.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHhhhhhhhhHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHH
Q 016405 42 SWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCF 121 (390)
Q Consensus 42 ~~a~~iag~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIRIL~mvPIYai~S~lsL~~p~~aiy~~~iRd~YEAfviY~F 121 (390)
.|+..+|+.|+.+|+.+|+.+|++||+||+||++||+|+||++|+||||++||+|++.|+.++|+|++||||||||||+|
T Consensus 34 ~~~~~~a~~f~vit~~ls~~~I~~HL~~y~~P~~qr~iv~il~mvPIys~~S~vsl~~p~~~~~~~~vr~~Yeaf~ly~F 113 (386)
T KOG2641|consen 34 TVALAIASFFVVITILLSLFHIYQHLRYYSNPREQRPIVRILFMVPIYSVASFVSLLVPRVAFYLDTVRECYEAFVLYVF 113 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhchhhhhhhhhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHhhhccccCCCchhhhhccCCccccCccccccccccc-CChhHHHHHHHhhhhhhHHHHHHHH
Q 016405 122 ERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWR-LGPEFYNAVKIGIVQYMILKMICAL 200 (390)
Q Consensus 122 ~~lli~ylGGe~~~i~~l~~~~~~~~~~p~l~~~~~~~~~~h~~P~~cc~~~~~-~~~~fl~~~K~gVlQy~ivkPl~ai 200 (390)
++||++|+|||++++..++++. .+.+|++|+|||.||+. +++.++++||+||+||+++||++++
T Consensus 114 ~sLl~~ylGGe~~~v~~l~~~~---------------~~~~~~~P~cc~~~p~~~~~~~~lr~~K~~vlQ~~ivkp~~~l 178 (386)
T KOG2641|consen 114 LSLLFHYLGGEQNIVTELEGRL---------------IRVNHTPPFCCFFPPTVRLTPKFLRRCKQGVLQYPIVKPFLAL 178 (386)
T ss_pred HHHHHHHcCChHHHHHHHhccC---------------CcccCCCCceeccCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987532 12578999988888765 8999999999999999999999999
Q ss_pred HHHHHHHhccccCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 016405 201 LAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFL 280 (390)
Q Consensus 201 ~aiIl~~~G~Y~~g~~~~~~~ylyi~ii~niS~~lALY~L~~Fy~~~k~~L~p~~P~~KFl~iK~VVFltfwQ~~ii~iL 280 (390)
++++++++|+|++|++++ |+|+++++|+|+++|+|||.+||+++||+|+||+|++||+|+|++||++||||+++++|
T Consensus 179 v~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~fy~~~~~~L~py~p~~KF~~vk~ivf~~~wQg~vi~~l 255 (386)
T KOG2641|consen 179 VTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLFYTVTKDELSPYQPVVKFLCVKLIVFLSFWQGIVLAIL 255 (386)
T ss_pred HHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCc---HHHHHHHhhhhHHHHHHHHHHHHHhhccCCCcccCC-CcccccceeeeecccCCCCCCccccccccC
Q 016405 281 FSIGAFRGSL---AQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRG-ERCVRNVAVMTDYASLGTPPDPEEVKDSER 356 (390)
Q Consensus 281 ~~~Gvi~~~~---~~~~~~~iq~~LICiEM~i~Ai~h~~aF~~~~Y~~~-~~~~~~~~~~~d~~s~~~~~~~~~v~~~~~ 356 (390)
.+.|.+++.. .++.+.++||++||+||+++|++|+||||++||... ++.. |+++.|...+.+..+|+.+
T Consensus 256 ~~~g~~~~~~~~~~~~~~~~iQnfiiciEM~i~ai~~~~af~~~~ya~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 328 (386)
T KOG2641|consen 256 VKLGKIGPSYFDEVGTVAYGIQNFLICIEMLIAAIAHFYAFPAAPYALFDERSC-------DYRSVDMFSISSSLWDSLM 328 (386)
T ss_pred HHhcccCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHhCCcchhcccccccc-------ccccccccccchHHHHhhc
Confidence 9999998543 357899999999999999999999999999999873 3221 4555566666666777777
Q ss_pred ccccccccccccccc--cccccccceeEecCccc
Q 016405 357 TTKMRIARHDEREKR--LNFPQSVRDVVLGSGEI 388 (390)
Q Consensus 357 ~~~~~~~~~~~~~~~--~~~~~s~~d~~~~~~~~ 388 (390)
|+.........-+++ ...++|.||+..++|-+
T Consensus 329 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
T KOG2641|consen 329 PNDLCSDAIRNFSPTYQDYTPQSDQDALSAPGSS 362 (386)
T ss_pred ccCcccccccCCCcccccccccccCccccCCCCc
Confidence 666655543333333 77888888887765543
No 3
>KOG3979 consensus FGF receptor activating protein 1 [Signal transduction mechanisms]
Probab=68.85 E-value=31 Score=34.48 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=68.3
Q ss_pred cchhHHHHHHHHHHHhh-cCCceeeccccCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHhhh
Q 016405 4 RGILYVLFFLLTVVESS-SRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGL 82 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~iag~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIRI 82 (390)
-+.+|-+-+.+.+++-. .+.+..-+.. .....|..++ .+-++|...-+..|..+..-|-++|..|+-|+..-|=
T Consensus 140 ~~ll~~L~~~v~~~e~l~l~~ls~v~~r---e~~~lha~~F--g~f~ic~~~~ml~s~il~~~~~~~y~~~~g~~s~~~k 214 (296)
T KOG3979|consen 140 YRLLRYLYFYVNVVENLFLLLLSAVSER---EIGKLHALGF--GVFLICSHILMLDSTILFTWTWKGYVSPHGPLSWRWK 214 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc---cCceeehhHH--HHHHHHHHHHHHHHHHHHHHhhcccCCcCCCcceeeh
Confidence 34556666666666653 2333222111 2334555233 3344444455778888889999999999998877443
Q ss_pred hhhhhHHHHHHHHHh-hccchhhHhHHHHHHHHHHHHHHHHHHHHHhc
Q 016405 83 ILMVPVYALESFLSL-LNSDAAFNCEVIRDCYEAFALYCFERYLIACL 129 (390)
Q Consensus 83 L~mvPIYai~S~lsL-~~p~~aiy~~~iRd~YEAfviY~F~~lli~yl 129 (390)
+...-++=+++..+. .+++.-+||..- .|+.|+|+.+-+-..+.+
T Consensus 215 il~~lv~~~~~~s~~~~~~~~~~~C~~~--ay~~fAi~ey~sV~~n~~ 260 (296)
T KOG3979|consen 215 ILTFLVMVFSFPSGAIFYIRHNVYCEPG--AYTLFAILEYSSVFLNSF 260 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHHHHHH
Confidence 322222222222222 245666777766 788899888776665543
No 4
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=59.92 E-value=73 Score=35.46 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhhccCCCCCcchhhHHHH
Q 016405 236 ALYCLVQFYSVTKDKLEPIKPLAKFLTFKS 265 (390)
Q Consensus 236 ALY~L~~Fy~~~k~~L~p~~P~~KFl~iK~ 265 (390)
++++++.=.+.. |...|-+|++|=+..++
T Consensus 459 ~~F~~~T~~rL~-ELsnpNhPLLkkll~EA 487 (700)
T COG1480 459 ALFGLLTTFRLL-ELSNPNHPLLKKLLTEA 487 (700)
T ss_pred HHhccCchhhHH-HhcCCCcHHHHHHHhhC
Confidence 344444333333 56678999999998875
No 5
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=44.68 E-value=3.3e+02 Score=27.14 Aligned_cols=125 Identities=21% Similarity=0.291 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHh--hhhhhhh-------HHHHHHHHHhhccchhhHhHHHHHHHHHH
Q 016405 46 FTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLI--GLILMVP-------VYALESFLSLLNSDAAFNCEVIRDCYEAF 116 (390)
Q Consensus 46 ~iag~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~II--RIL~mvP-------IYai~S~lsL~~p~~aiy~~~iRd~YEAf 116 (390)
++|++.+.+++.++...-+ -+.+|+-|-++.-+. -|+-|+| +|.+...++++
T Consensus 80 iva~~t~~i~v~~~~~~aY-afSR~rF~GRk~~L~~~LilqMfP~~~aliAlY~l~~~lgll------------------ 140 (282)
T COG3833 80 IVALITAAITVALVTLAAY-AFSRYRFKGRKYLLKFFLILQMFPGVAALIALYVLLKLLGLL------------------ 140 (282)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------------------
Confidence 5788888888887755544 677888886665443 3445555 44444444422
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhhhccccCCCchhhhhccCCccccCcccccccccccCChhHHHHHHHhhhhhhHHHH
Q 016405 117 ALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKM 196 (390)
Q Consensus 117 viY~F~~lli~ylGGe~~~i~~l~~~~~~~~~~p~l~~~~~~~~~~h~~P~~cc~~~~~~~~~fl~~~K~gVlQy~ivkP 196 (390)
=+...|.+.|.||--..-..+- +|.-+...+.+|++-. -.|-.-+|.-..=+ .+..||
T Consensus 141 --nt~~gLil~Y~gG~ip~nt~l~-Kgy~DtIP~sldEaA~-----------------iDGAt~~q~F~~Iv--LPLs~P 198 (282)
T COG3833 141 --NTLWGLILAYLGGAIPMNTWLI-KGYFDTIPKSLDEAAK-----------------IDGATRFQIFRRIL--LPLSKP 198 (282)
T ss_pred --hhHHHHHHHHhcCchHHHHHHH-HhhhhcCCccHHHHHh-----------------hcCcchHHHHHHHH--Hhhhhh
Confidence 2245678889998764433332 2333333333443221 01111111111111 477899
Q ss_pred HHHHHHHHHHHhcccc
Q 016405 197 ICALLAMILQTFGVYG 212 (390)
Q Consensus 197 l~ai~aiIl~~~G~Y~ 212 (390)
+.+++++..-. |-|+
T Consensus 199 ~lavvaL~~Fi-Gp~~ 213 (282)
T COG3833 199 ILAVVALLAFI-GPFG 213 (282)
T ss_pred HHHHHHHHHHH-hHHH
Confidence 99998875533 4444
No 6
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=40.70 E-value=5.4e+02 Score=28.39 Aligned_cols=66 Identities=17% Similarity=0.349 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhccccCc--cccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcch
Q 016405 193 ILKMICALLAMILQTFGVYGEG--KFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAK 259 (390)
Q Consensus 193 ivkPl~ai~aiIl~~~G~Y~~g--~~~~~~~ylyi~ii~niS~~lALY~L~~Fy~~~k~~L~p~~P~~K 259 (390)
++=-++.+.+++|-+.|.=--| +..|+++++--.++..+- .+..+++.-.|...|+.+-|+|-+..
T Consensus 241 ~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~-~Lv~F~~wE~~~~~~~Pl~P~~Lf~~ 308 (599)
T PF06609_consen 241 WIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV-LLVAFVVWEWFGAPKDPLFPHRLFKD 308 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH-HHHHHHHhhhhccCCCCcCCHHHhcc
Confidence 3444555555555555543222 246888887655555543 34444666555555677777665543
No 7
>PRK11056 hypothetical protein; Provisional
Probab=35.58 E-value=1.1e+02 Score=26.58 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhHHHhhhhhhhhHHHHHHHHHhhccchh
Q 016405 49 SLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAA 103 (390)
Q Consensus 49 g~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIRIL~mvPIYai~S~lsL~~p~~a 103 (390)
.+|-++|+++|.|..+|+..|.+.|+.=-.+..-.+.+=++.-..++---+|+..
T Consensus 37 SiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraeyPeiG 91 (120)
T PRK11056 37 SIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLYSAFVRAEYPEIG 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 5789999999999999999999999876555555555555555555555566554
No 8
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=32.94 E-value=6.7e+02 Score=27.24 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=12.9
Q ss_pred cCChhHHHHHHHhhh
Q 016405 175 RLGPEFYNAVKIGIV 189 (390)
Q Consensus 175 ~~~~~fl~~~K~gVl 189 (390)
++|...+|.|+.|+.
T Consensus 301 ~Lg~~l~rv~~ig~~ 315 (518)
T KOG2568|consen 301 TLGGTLLRVCQIGVI 315 (518)
T ss_pred CcchHHHHHHHHhHH
Confidence 678899999999984
No 9
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=30.36 E-value=1.8e+02 Score=25.28 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhHHHhhhhhhhhHHHHHHHHHhhccchh
Q 016405 49 SLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAA 103 (390)
Q Consensus 49 g~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIRIL~mvPIYai~S~lsL~~p~~a 103 (390)
.+|-++|++++.+..+|+..|.+.|+.=-.+..-.+.+=++.=..++---+|+..
T Consensus 37 SiFPlIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraqyPeiG 91 (117)
T PF07226_consen 37 SIFPLIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGYSAFVRAQYPEIG 91 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 5789999999999999999999999875544444444444444444444455443
No 10
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=26.07 E-value=1.1e+02 Score=20.62 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=20.2
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHH
Q 016405 33 AESDSVVAYSWPVFTASLFVLVALIL 58 (390)
Q Consensus 33 ~~~~~~~~~~~a~~iag~f~lla~~i 58 (390)
+.+.+.|+|.+.+.++++|.+.+..+
T Consensus 3 QTs~gtp~y~y~Ip~v~lflL~~~~i 28 (33)
T TIGR03068 3 QTNAGTPAYIYAIPVASLALLIAITL 28 (33)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 46778888888888888888877655
No 11
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.22 E-value=1.4e+02 Score=24.68 Aligned_cols=40 Identities=33% Similarity=0.413 Sum_probs=24.4
Q ss_pred hhhHHHhhhhhhhhHHHHHHHHHhhccchhhHhHHHHHHHHHH
Q 016405 74 EEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAF 116 (390)
Q Consensus 74 ~~Qr~IIRIL~mvPIYai~S~lsL~~p~~aiy~~~iRd~YEAf 116 (390)
+.|+.++ ...|+|++.|+-++.--+..-=.-+.+||=||+
T Consensus 31 ~~~~~ii---~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~ 70 (91)
T PF08285_consen 31 EPQQEII---PYLPFYALVSFGCYSLFTLGYGVATFNDCPEAA 70 (91)
T ss_pred hhHHHHH---HHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHH
Confidence 3455554 567999998887765444444444555555544
No 12
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=24.93 E-value=95 Score=25.28 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHhhh
Q 016405 46 FTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGL 82 (390)
Q Consensus 46 ~iag~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIRI 82 (390)
.+.+..+++-+.+-.|.+. +..|.+-.+||.|-|.
T Consensus 8 ~iialiv~~iiaIvvW~iv--~ieYrk~~rqrkId~l 42 (81)
T PF00558_consen 8 AIIALIVALIIAIVVWTIV--YIEYRKIKRQRKIDRL 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHH
Confidence 3455555555566677775 8999999999999775
No 13
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.76 E-value=41 Score=34.51 Aligned_cols=8 Identities=38% Similarity=0.605 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 016405 232 SQTWALYC 239 (390)
Q Consensus 232 S~~lALY~ 239 (390)
+++|++|+
T Consensus 244 ~I~~il~~ 251 (372)
T KOG2927|consen 244 GITWILTG 251 (372)
T ss_pred HHHHHHhC
Confidence 34444444
No 14
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=24.17 E-value=2e+02 Score=22.98 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=28.1
Q ss_pred hhHHHhhhhhhhhHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 016405 75 EQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIA 127 (390)
Q Consensus 75 ~Qr~IIRIL~mvPIYai~S~lsL~~p~~aiy~~~iRd~YEAfviY~F~~lli~ 127 (390)
.+....|+++|+|.+-+.+..+. .-.+.++..++..++.
T Consensus 2 r~~~~~R~l~mi~~~ivl~~~~~--------------~~~~~~~~q~~~~L~t 40 (80)
T PF14333_consen 2 REAVWLRLLLMIPFAIVLSLASI--------------VLGVLVLIQWFAILFT 40 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHc
Confidence 46678999999999888776665 4456666666665554
No 15
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=23.39 E-value=5.4e+02 Score=23.05 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=44.7
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHhhhhhhhhHHHHHHHHHhhccchhh-HhHHHHHHH
Q 016405 35 SDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAF-NCEVIRDCY 113 (390)
Q Consensus 35 ~~~~~~~~~a~~iag~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIRIL~mvPIYai~S~lsL~~p~~ai-y~~~iRd~Y 113 (390)
....|. ....+.-++..+...+...+.++...++++-..-...+|+.+.+-.....-.....++.... ....+....
T Consensus 116 ~~~~H~--~~a~~ff~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ai~ 193 (215)
T PF10277_consen 116 HPTVHY--IGAVLFFVSSFIYMLLQTILSYRLGPHYSNKSRRSFRLRLILLVISIICFISFIVFFILHNFYGAYSIFAIF 193 (215)
T ss_pred CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Confidence 335555 33334444455555555555555555543444555666766554443332222333333222 355666677
Q ss_pred HHHHHHHHHHHHHH
Q 016405 114 EAFALYCFERYLIA 127 (390)
Q Consensus 114 EAfviY~F~~lli~ 127 (390)
|=.....+..+...
T Consensus 194 Ew~~~~~~~~f~~t 207 (215)
T PF10277_consen 194 EWVLVFSNILFFLT 207 (215)
T ss_pred HHHHHHHHHHHHHH
Confidence 75555555555444
No 16
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=21.82 E-value=5.5e+02 Score=23.17 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhhhHHHhhhhhhhhHHHHHHHHHhhccchhhHhHHHHHHHHHHHHHHHHHHHH
Q 016405 51 FVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLI 126 (390)
Q Consensus 51 f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIRIL~mvPIYai~S~lsL~~p~~aiy~~~iRd~YEAfviY~F~~lli 126 (390)
..++++++.+.-++.-.+.-.+|-.-|+| .++|+.-.++.+-..+|-... +.-+.-||+++-.+|++.+
T Consensus 6 s~~~~i~m~~~vi~~R~ka~~rP~~~kkI----IlPplfmstG~lmf~~P~~~~---~~~~~l~A~~~G~lFs~~L 74 (148)
T PF07301_consen 6 SIIIAIVMALLVIFIRMKASKRPVNGKKI----ILPPLFMSTGFLMFVFPFFRP---PWLEVLEAFLVGALFSYPL 74 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCcchH----HHhHHHHHHHHHHHhCccccc---hHHHHHHHHHHHHHHHHHH
Confidence 34455556666667778888888755554 489999888888888887665 5568889999988877655
No 17
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=21.38 E-value=59 Score=26.78 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhH
Q 016405 46 FTASLFVLVALILSTYLIIEHLAAYNQPEEQK 77 (390)
Q Consensus 46 ~iag~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr 77 (390)
..+|+.++++.++.++++...+.+|-+|+...
T Consensus 20 ~~Gg~iSi~~~~~~~~L~~~E~~~y~~~~~~~ 51 (96)
T PF13850_consen 20 SSGGIISIITIVLIVILFISELYSYLSGEIKY 51 (96)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHcccceeE
Confidence 35789999999999999999999999997543
No 18
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=20.43 E-value=6.2e+02 Score=22.56 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHhh--hhhhhhHHHHHHHHHhhccch
Q 016405 47 TASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIG--LILMVPVYALESFLSLLNSDA 102 (390)
Q Consensus 47 iag~f~lla~~iS~~~I~~Hl~~Yt~P~~Qr~IIR--IL~mvPIYai~S~lsL~~p~~ 102 (390)
..++...++.++|+..|+. |.|-..|..+++ +++++=.|+...+.++-.+..
T Consensus 55 ~l~il~~l~~~lal~aIFl----yKnR~lQ~~L~~~nill~~~~~~~~~~~~~~~~~~ 108 (149)
T PF14126_consen 55 PLFILLVLSAILALIAIFL----YKNRKLQIRLCVLNILLNVGLYGLFAYFSLNLSGE 108 (149)
T ss_pred HHHHHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5667778888899888874 788889999987 677776777766666655543
Done!