Query 016405
Match_columns 390
No_of_seqs 191 out of 496
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zl8_A LIN-7; heterodimer, alp 13.5 82 0.0028 22.4 1.6 15 102-116 38-52 (53)
2 1v54_M VIIIB, IX, cytochrome C 13.0 1.3E+02 0.0046 20.8 2.6 28 47-74 17-44 (46)
3 4htp_A DNA ligase 4; helical d 11.4 1.2E+02 0.0041 27.7 2.6 22 62-83 169-190 (240)
4 2y69_M Cytochrome C oxidase po 9.7 2.5E+02 0.0084 21.2 3.3 28 47-74 41-68 (70)
5 1zoq_C CREB-binding protein, i 9.5 1.3E+02 0.0045 20.8 1.5 26 60-85 3-28 (47)
6 1kbh_B CREB-binding protein, n 9.0 1.9E+02 0.0066 20.9 2.3 26 60-85 10-35 (59)
7 1muk_A Minor core protein lamb 8.2 1.1E+02 0.0039 33.7 1.2 18 1-18 833-850 (1267)
8 3m73_A Tellurite resistance pr 6.1 1.3E+03 0.045 21.2 7.5 35 65-99 186-220 (314)
9 1nkz_B Light-harvesting protei 5.5 1.8E+02 0.0061 19.7 0.6 18 307-324 23-40 (41)
10 3ddl_A Xanthorhodopsin; carote 5.5 9.9E+02 0.034 22.0 6.1 32 67-98 36-67 (273)
No 1
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=13.48 E-value=82 Score=22.43 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.1
Q ss_pred hhhHhHHHHHHHHHH
Q 016405 102 AAFNCEVIRDCYEAF 116 (390)
Q Consensus 102 ~aiy~~~iRd~YEAf 116 (390)
-+-+|+.+|++||-.
T Consensus 38 qSdF~~aVREVYEhv 52 (53)
T 1zl8_A 38 QSEFFGAVREVYETV 52 (53)
T ss_dssp SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 356899999999953
No 2
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=13.01 E-value=1.3e+02 Score=20.83 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChh
Q 016405 47 TASLFVLVALILSTYLIIEHLAAYNQPE 74 (390)
Q Consensus 47 iag~f~lla~~iS~~~I~~Hl~~Yt~P~ 74 (390)
++.....+++++---=++.||.+|.+.|
T Consensus 17 igl~v~f~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 17 IGLSVTFLSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTC-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 3444444455555455677999998874
No 3
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=11.44 E-value=1.2e+02 Score=27.73 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=17.7
Q ss_pred HHHHHHHhCCChhhhHHHhhhh
Q 016405 62 LIIEHLAAYNQPEEQKFLIGLI 83 (390)
Q Consensus 62 ~I~~Hl~~Yt~P~~Qr~IIRIL 83 (390)
.++..|..=..|.||||++|++
T Consensus 169 ~~l~~Ll~~~t~~E~k~liRii 190 (240)
T 4htp_A 169 KSLLQLITQSSALEQKWLIRMI 190 (240)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHH
Confidence 4556666668899999999996
No 4
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.71 E-value=2.5e+02 Score=21.20 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChh
Q 016405 47 TASLFVLVALILSTYLIIEHLAAYNQPE 74 (390)
Q Consensus 47 iag~f~lla~~iS~~~I~~Hl~~Yt~P~ 74 (390)
|+.....+++++---=++.||.+|.+.|
T Consensus 41 igltv~f~~~L~PagWVLshLe~YKk~e 68 (70)
T 2y69_M 41 IGLSVTFLSFLLPAGWVLYHLDNYKKSS 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHSCC-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 4444444455555455777999999874
No 5
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=9.51 E-value=1.3e+02 Score=20.81 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCChhhhHHHhhhhhh
Q 016405 60 TYLIIEHLAAYNQPEEQKFLIGLILM 85 (390)
Q Consensus 60 ~~~I~~Hl~~Yt~P~~Qr~IIRIL~m 85 (390)
+..+.+-+++=+.|+.|-.++.||=-
T Consensus 3 LqqLl~tlksp~sp~qqqqvl~ILks 28 (47)
T 1zoq_C 3 LQDLLRTLKSPSSPQQQQQVLNILKS 28 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 45677778888899999999999743
No 6
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=9.03 E-value=1.9e+02 Score=20.93 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCChhhhHHHhhhhhh
Q 016405 60 TYLIIEHLAAYNQPEEQKFLIGLILM 85 (390)
Q Consensus 60 ~~~I~~Hl~~Yt~P~~Qr~IIRIL~m 85 (390)
+..+.+-+++=+.|+.|-.++.||=-
T Consensus 10 LqqLl~tlksp~speqqqqvl~ILks 35 (59)
T 1kbh_B 10 LQDLLRTLKSPSSPQQQQQVLNILKS 35 (59)
T ss_dssp HHHHHHHHHSCTTTTCSTHHHHHHTT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 56788899999999999999999743
No 7
>1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers, PALM, thumb, right hand configuration, viral protein; 2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A* 1n1h_A* 1n35_A* 1n38_A* 1uon_A* 2cse_1
Probab=8.23 E-value=1.1e+02 Score=33.72 Aligned_cols=18 Identities=11% Similarity=0.301 Sum_probs=14.3
Q ss_pred CCccchhHHHHHHHHHHH
Q 016405 1 MGWRGILYVLFFLLTVVE 18 (390)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (390)
++||+|||..+.+.-..+
T Consensus 833 l~WR~WlRfsWalac~~S 850 (1267)
T 1muk_A 833 LQWQRWIRYSWALCCAFS 850 (1267)
T ss_dssp CCHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHhc
Confidence 689999999998764443
No 8
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=6.10 E-value=1.3e+03 Score=21.19 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=28.8
Q ss_pred HHHHhCCChhhhHHHhhhhhhhhHHHHHHHHHhhc
Q 016405 65 EHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLN 99 (390)
Q Consensus 65 ~Hl~~Yt~P~~Qr~IIRIL~mvPIYai~S~lsL~~ 99 (390)
+.+..-.-|++.|.-+.|..-+|-.+..+++++-.
T Consensus 186 ~Rl~~~~lp~~~~P~~~I~~aP~~~~~~a~l~l~~ 220 (314)
T 3m73_A 186 QHLRISSLEPQFRATMGIVLAPAFVCVSAYLSINH 220 (314)
T ss_dssp HHHHHTCCCHHHHGGGGGGGHHHHHHHHHHHHHTT
T ss_pred HHHcccCCChhhhhHHHHHHhhHHHHHHHHHHHcC
Confidence 34444566889999999999999999999998853
No 9
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=5.50 E-value=1.8e+02 Score=19.70 Aligned_cols=18 Identities=39% Similarity=0.818 Sum_probs=14.4
Q ss_pred HHHHHHHHhhccCCCccc
Q 016405 307 MGIAAVVHLYVFPARPYK 324 (390)
Q Consensus 307 M~i~Ai~h~~aF~~~~Y~ 324 (390)
..++.++|.-++-++|+-
T Consensus 23 ~~iA~vAH~l~w~wrPWl 40 (41)
T 1nkz_B 23 LGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 456788999999999873
No 10
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=5.49 E-value=9.9e+02 Score=22.01 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHhCCChhhhHHHhhhhhhhhHHHHHHHHHhh
Q 016405 67 LAAYNQPEEQKFLIGLILMVPVYALESFLSLL 98 (390)
Q Consensus 67 l~~Yt~P~~Qr~IIRIL~mvPIYai~S~lsL~ 98 (390)
+...+.|.+.|...-+..+++..|..+..++.
T Consensus 36 ~~~~~v~~~~R~~~~v~~lit~IAai~Yf~Ma 67 (273)
T 3ddl_A 36 LARNNVAPKYRISMMVSALVVFIAGYHYFRIT 67 (273)
T ss_dssp HGGGGSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCcceehhhHHHHHHHHHHHHHHHHHH
Confidence 45566888888888888888888887777664
Done!