Query 016405
Match_columns 390
No_of_seqs 191 out of 496
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 13:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016405.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016405hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 18.3 25 0.0018 23.2 1.6 14 102-115 35-48 (50)
2 d1y74a1 a.194.1.1 (A:17-73) Li 16.3 29 0.0021 23.4 1.6 15 102-116 36-50 (57)
3 d1ijdb_ f.3.1.1 (B:) Light-har 9.5 51 0.0037 20.5 1.1 16 308-323 25-40 (40)
4 d1nkzb_ f.3.1.1 (B:) Light-har 7.4 57 0.0042 20.4 0.6 17 308-324 24-40 (41)
5 d1muka_ e.8.1.4 (A:) Reovirus 6.3 67 0.0049 32.6 0.8 14 1-14 832-845 (1264)
6 d1zoqc1 a.153.1.1 (C:2065-2111 6.3 1.1E+02 0.0078 19.4 1.5 28 60-87 3-30 (47)
7 d1rzhh2 f.23.10.1 (H:11-35) Ph 5.9 2.5E+02 0.018 15.5 3.3 17 233-249 9-25 (26)
8 d1v54d_ f.23.1.1 (D:) Mitochon 5.8 2.8E+02 0.021 21.6 4.3 36 38-73 70-105 (144)
9 d1v54m_ f.23.7.1 (M:) Mitochon 5.8 2.1E+02 0.016 17.9 2.8 26 47-72 17-42 (43)
10 d1x9na1 a.235.1.1 (A:262-533) 4.8 1.4E+02 0.01 25.6 2.0 20 64-83 166-185 (272)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=18.28 E-value=25 Score=23.16 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=11.8
Q ss_pred hhhHhHHHHHHHHH
Q 016405 102 AAFNCEVIRDCYEA 115 (390)
Q Consensus 102 ~aiy~~~iRd~YEA 115 (390)
-+-+|+.+|++||-
T Consensus 35 qSdF~~avREVYe~ 48 (50)
T d1zl8a1 35 QSEFFGAVREVYET 48 (50)
T ss_dssp SCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45689999999995
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.31 E-value=29 Score=23.41 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.3
Q ss_pred hhhHhHHHHHHHHHH
Q 016405 102 AAFNCEVIRDCYEAF 116 (390)
Q Consensus 102 ~aiy~~~iRd~YEAf 116 (390)
-+-||+.+|++||-.
T Consensus 36 qSdF~~avREVYehv 50 (57)
T d1y74a1 36 QSRFCSAIREVYEQL 50 (57)
T ss_dssp HSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999999953
No 3
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=9.54 E-value=51 Score=20.54 Aligned_cols=16 Identities=38% Similarity=0.712 Sum_probs=13.0
Q ss_pred HHHHHHHhhccCCCcc
Q 016405 308 GIAAVVHLYVFPARPY 323 (390)
Q Consensus 308 ~i~Ai~h~~aF~~~~Y 323 (390)
.++.++|.-+|.++|+
T Consensus 25 ~iA~~AH~La~~~tPW 40 (40)
T d1ijdb_ 25 VIAAIAHFLAFTLTPW 40 (40)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 4677889999998885
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=7.43 E-value=57 Score=20.41 Aligned_cols=17 Identities=41% Similarity=0.811 Sum_probs=13.7
Q ss_pred HHHHHHHhhccCCCccc
Q 016405 308 GIAAVVHLYVFPARPYK 324 (390)
Q Consensus 308 ~i~Ai~h~~aF~~~~Y~ 324 (390)
.++.++|.-+|.++|+-
T Consensus 24 ~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 24 GLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHhCccc
Confidence 56778899999999874
No 5
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId: 10891]}
Probab=6.33 E-value=67 Score=32.64 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=12.2
Q ss_pred CCccchhHHHHHHH
Q 016405 1 MGWRGILYVLFFLL 14 (390)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (390)
|+||+|+|..+.+.
T Consensus 832 l~Wr~WlRfsWA~a 845 (1264)
T d1muka_ 832 LQWQRWIRYSWALC 845 (1264)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 69999999998764
No 6
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.32 E-value=1.1e+02 Score=19.41 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCChhhhHHHhhhhhhhh
Q 016405 60 TYLIIEHLAAYNQPEEQKFLIGLILMVP 87 (390)
Q Consensus 60 ~~~I~~Hl~~Yt~P~~Qr~IIRIL~mvP 87 (390)
+-...+-|++=+.|+.|..+.-||=-=|
T Consensus 3 lq~Ll~tLrsP~sP~QQqQvL~ILksNP 30 (47)
T d1zoqc1 3 LQDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 3456677788888999999998874433
No 7
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.91 E-value=2.5e+02 Score=15.47 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhh
Q 016405 233 QTWALYCLVQFYSVTKD 249 (390)
Q Consensus 233 ~~lALY~L~~Fy~~~k~ 249 (390)
..|+.++++++|..+..
T Consensus 9 ~fw~ffalli~ylqten 25 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 45788888888877643
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.80 E-value=2.8e+02 Score=21.58 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=25.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q 016405 38 VVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQP 73 (390)
Q Consensus 38 ~~~~~~a~~iag~f~lla~~iS~~~I~~Hl~~Yt~P 73 (390)
.|+-.|...++|++..+++.+.++...++..+=..|
T Consensus 70 ~p~gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~~P 105 (144)
T d1v54d_ 70 RSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIP 105 (144)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 445569988999888888887777666665443335
No 9
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.76 E-value=2.1e+02 Score=17.89 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016405 47 TASLFVLVALILSTYLIIEHLAAYNQ 72 (390)
Q Consensus 47 iag~f~lla~~iS~~~I~~Hl~~Yt~ 72 (390)
|+-..+.++++.-.--|+.||-+|.+
T Consensus 17 igLt~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 17 IGLSVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHhcc
Confidence 44445555666666667889999864
No 10
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.78 E-value=1.4e+02 Score=25.55 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=14.5
Q ss_pred HHHHHhCCChhhhHHHhhhh
Q 016405 64 IEHLAAYNQPEEQKFLIGLI 83 (390)
Q Consensus 64 ~~Hl~~Yt~P~~Qr~IIRIL 83 (390)
+..|..=..|.|+||++|++
T Consensus 166 i~~Ll~~~~~~E~kyliR~l 185 (272)
T d1x9na1 166 IKGLFVACRHSEARFIARSL 185 (272)
T ss_dssp HHHHHHHCCSTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 34444445789999999986
Done!