BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016407
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8F|A Chain A, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|B Chain B, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|C Chain C, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|D Chain D, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
Length = 157
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 104/161 (64%), Gaps = 4/161 (2%)
Query: 230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTK 289
P LEL+ G+KW VENQ NLVI+D + KQ Y++ C ++ LQI+GK+N+IT+D C K
Sbjct: 1 PAVLELE-GKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKK 59
Query: 290 MGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEI 349
+G+VF DVV EI+N V+ Q G PTIS++ T GC YLS++SL I +AKSSE+
Sbjct: 60 LGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEM 119
Query: 350 NVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSGG 390
NVL+P G D+ E +P+QF T +G T V+ G
Sbjct: 120 NVLIPTEG--GDFNEFPVPEQF-KTLWNGQKLVTTVTEIAG 157
>pdb|1K4Z|A Chain A, C-Terminal Domain Of Cyclase Associated Protein
pdb|1K4Z|B Chain B, C-Terminal Domain Of Cyclase Associated Protein
Length = 159
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 2/160 (1%)
Query: 230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTK 289
PP+ EL +G KW +EN ++ D + +S+++ C ++QI+GKVN I++ +
Sbjct: 2 PPRKEL-VGNKWFIENYENETESLVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETES 60
Query: 290 MGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEI 349
VV ++ +++ N Q S P IS+D + G +YLS++SL I T+ S+ I
Sbjct: 61 CSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLNTEIYTSCSTAI 120
Query: 350 NVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSG 389
NV +P G D D+ E +P+Q H++ DG F++ H+G
Sbjct: 121 NVNLP-IGEDDDYVEFPIPEQMKHSFADGKFKSAVFEHAG 159
>pdb|1KQ5|A Chain A, C-Terminal Domain Of Cyclase Associated Protein With Pro
505 Replaced By Ser (P505s)
pdb|1KQ5|B Chain B, C-Terminal Domain Of Cyclase Associated Protein With Pro
505 Replaced By Ser (P505s)
Length = 159
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTK 289
PP+ EL +G KW +EN ++ D + +S+++ C ++QI+GKVN I++ +
Sbjct: 2 PPRKEL-VGNKWFIENYENETESLVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETES 60
Query: 290 MGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEI 349
VV ++ +++ N Q S P IS+D + G +YLS++SL I T+ S+ I
Sbjct: 61 CSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLNTEIYTSCSTAI 120
Query: 350 NVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSG 389
NV +P G D D+ E + +Q H++ DG F++ H+G
Sbjct: 121 NVNLP-IGEDDDYVEFPISEQMKHSFADGKFKSAVFEHAG 159
>pdb|2B0R|A Chain A, Crystal Structure Of Cyclase-Associated Protein From
Cryptosporidium Parvum
pdb|2B0R|B Chain B, Crystal Structure Of Cyclase-Associated Protein From
Cryptosporidium Parvum
Length = 202
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 6/182 (3%)
Query: 204 RADRSGVVAAGEKESRTSSPSFSKAGPPKLELQMGRKWVVENQIGRKN-LVIDDCDAKQS 262
R +S + EK+ + + + G PK+ELQ ++VEN + + + + + K
Sbjct: 17 RGSKSQIYLKKEKKMKAARQVVTN-GSPKVELQKDT-YLVENHVNCADPITLSEGSIKNK 74
Query: 263 VYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISV 322
V V ++S + ++ KVN+I I+ C + V+++ EIVNC+ ++ Q G PTIS+
Sbjct: 75 VSVRCSQNSRIIVEQKVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTGIVPTISL 134
Query: 323 DNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKD--GHF 380
D + +Y S++ + ++KSSE+N+L PG + DW E A+P+QFV Y + G
Sbjct: 135 DKSNKVNIYTSKEGKNVEVYSSKSSEMNLLFPGE-EEGDWKELAIPEQFVTKYNESKGKL 193
Query: 381 ET 382
E+
Sbjct: 194 ES 195
>pdb|1TJF|A Chain A, The Crystal Structure Of The N-Terminal Domain Of Cap
Indicates Variable Oligomerisation
pdb|1TJF|B Chain B, The Crystal Structure Of The N-Terminal Domain Of Cap
Indicates Variable Oligomerisation
Length = 186
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 3 QKPDLVGLAEFLKPLNEVIMKANAMTEGRRSD-FFNHLKSAADSLTALAWIAYTGKDCGM 61
+KP L E +KPLN + + + RS FFN+L + ++S+ L+W+
Sbjct: 61 KKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVVVE------ 114
Query: 62 SMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPV 121
P HV E AEFY+N+IL E++ + + V+W +L L Y+K ++ G
Sbjct: 115 PTPGPHVAEMRGSAEFYTNRILKEFKGVNQDQVDWVSNYVN-FLKDLEKYIKQYHTTGLT 173
Query: 122 WSATG 126
W+ G
Sbjct: 174 WNPKG 178
>pdb|1S0P|A Chain A, Structure Of The N-Terminal Domain Of The Adenylyl
Cyclase- Associated Protein (Cap) From Dictyostelium
Discoideum.
pdb|1S0P|B Chain B, Structure Of The N-Terminal Domain Of The Adenylyl
Cyclase- Associated Protein (Cap) From Dictyostelium
Discoideum
Length = 176
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 3 QKPDLVGLAEFLKPLNEVIMKANAMTEGRRSD-FFNHLKSAADSLTALAWIAYTGKDCGM 61
+KP L E +KPLN + + + RS FFN+L + ++S+ L+W+
Sbjct: 52 KKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVVVE------ 105
Query: 62 SMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPV 121
P HV E AEFY+N+IL E++ + + V+W +L L Y+K ++ G
Sbjct: 106 PTPGPHVAEMRGSAEFYTNRILKEFKGVNQDQVDWVSNYVN-FLKDLEKYIKQYHTTGLT 164
Query: 122 WSATG 126
W+ G
Sbjct: 165 WNPKG 169
>pdb|2WAZ|X Chain X, N512p Mutant Of The Dna Binding Domain Of The Adenovirus 5
Ssdna Binding Protein
Length = 356
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 226 SKAGPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITID 285
S+ G L+ Q + +V+N+ GR + I + DA+ V+ C + Q GK +
Sbjct: 130 SENGQRALKEQSSKAKIVKNRWGRNVVQISNTDARCCVHDAACPAN--QFSGKSCGMFFS 187
Query: 286 KCTKMGVVFKDVVAAFEIVNCNG 308
+ K V FK + A + + N
Sbjct: 188 EGAKAQVAFKQIKAFMQALYPNA 210
>pdb|1ADV|A Chain A, Early E2a Dna-Binding Protein
pdb|1ADV|B Chain B, Early E2a Dna-Binding Protein
pdb|1ADU|A Chain A, Early E2a Dna-Binding Protein
pdb|1ADU|B Chain B, Early E2a Dna-Binding Protein
pdb|1ANV|A Chain A, Adenovirus 5 DbpURANYL FLUORIDE SOAK
pdb|2WB0|X Chain X, 2.1 Resolution Structure Of The C-Terminal Domain Of The
Human Adenovirus 5 Ssdna Binding Protein
Length = 356
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 226 SKAGPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITID 285
S+ G L+ Q + +V+N+ GR + I + DA+ V+ C + Q GK +
Sbjct: 130 SENGQRALKEQSSKAKIVKNRWGRNVVQISNTDARCCVHDAACPAN--QFSGKSCGMFFS 187
Query: 286 KCTKMGVVFKDVVAAFEIVNCNG 308
+ K V FK + A + + N
Sbjct: 188 EGAKAQVAFKQIKAFMQALYPNA 210
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
Length = 763
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 64 PIAHVEESWQMAEFYSNKILVEYRSKDPNHVEW 96
PI V ++ Q FYS E++S PNH +W
Sbjct: 146 PIVKVSKNKQEMAFYSLPEFEEWKSSTPNHKKW 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,064,098
Number of Sequences: 62578
Number of extensions: 425393
Number of successful extensions: 686
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 9
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)