Query 016407
Match_columns 390
No_of_seqs 167 out of 342
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2675 Adenylate cyclase-asso 100.0 1E-140 2E-145 1053.9 33.6 375 2-388 99-480 (480)
2 PF01213 CAP_N: Adenylate cycl 100.0 7.8E-76 1.7E-80 577.8 7.8 204 2-214 95-302 (312)
3 PF08603 CAP_C: Adenylate cycl 100.0 3E-64 6.6E-69 453.8 17.6 159 228-388 1-159 (159)
4 KOG2675 Adenylate cyclase-asso 99.0 7E-09 1.5E-13 106.1 15.1 75 273-347 347-429 (480)
5 smart00673 CARP Domain in CAPs 98.5 1.7E-07 3.7E-12 65.2 4.7 37 268-304 1-37 (38)
6 smart00673 CARP Domain in CAPs 98.5 1.9E-07 4.2E-12 64.9 4.4 37 306-342 1-37 (38)
7 PF08603 CAP_C: Adenylate cycl 98.3 3.8E-06 8.2E-11 76.7 9.2 79 274-354 26-105 (159)
8 PF07986 TBCC: Tubulin binding 98.1 2.6E-05 5.6E-10 67.3 9.4 104 261-371 2-110 (120)
9 PF07986 TBCC: Tubulin binding 97.0 0.013 2.9E-07 50.5 11.7 87 238-331 1-88 (120)
10 KOG1924 RhoA GTPase effector D 94.2 0.13 2.9E-06 57.1 7.7 17 360-376 756-772 (1102)
11 KOG3671 Actin regulatory prote 92.8 0.16 3.4E-06 54.0 5.2 23 175-200 494-516 (569)
12 KOG1924 RhoA GTPase effector D 92.8 0.4 8.6E-06 53.6 8.4 35 239-273 618-653 (1102)
13 KOG4462 WASP-interacting prote 92.7 0.09 2E-06 53.8 3.1 20 174-196 29-48 (437)
14 KOG4416 Uncharacterized conser 92.1 0.26 5.6E-06 52.3 5.6 76 256-333 330-405 (605)
15 PF02205 WH2: WH2 motif; Inte 80.6 0.39 8.5E-06 32.4 -0.6 23 174-197 3-25 (30)
16 PF01213 CAP_N: Adenylate cycl 80.0 0.56 1.2E-05 47.4 0.0 8 122-129 202-209 (312)
17 KOG3397 Acetyltransferases [Ge 71.8 3.5 7.5E-05 39.1 2.9 12 11-22 22-33 (225)
18 KOG3671 Actin regulatory prote 71.7 4.7 0.0001 43.3 4.1 21 173-196 465-485 (569)
19 COG5178 PRP8 U5 snRNP spliceos 61.0 6.3 0.00014 46.4 2.7 8 348-355 290-297 (2365)
20 TIGR02856 spore_yqfC sporulati 60.9 71 0.0015 26.4 8.3 64 228-303 17-83 (85)
21 KOG1830 Wiskott Aldrich syndro 60.6 5.5 0.00012 42.0 2.1 29 175-206 455-485 (518)
22 PF05308 Mito_fiss_reg: Mitoch 58.0 8.6 0.00019 37.9 2.8 14 46-59 56-69 (253)
23 PF01690 PLRV_ORF5: Potato lea 55.3 9.3 0.0002 40.7 2.7 14 190-203 61-75 (465)
24 KOG4416 Uncharacterized conser 52.7 25 0.00054 38.0 5.3 67 238-309 334-400 (605)
25 PF01690 PLRV_ORF5: Potato lea 52.1 11 0.00024 40.2 2.7 19 256-274 131-149 (465)
26 KOG2512 Beta-tubulin folding c 51.9 6.2 0.00013 40.3 0.8 104 240-346 176-279 (337)
27 COG3123 Uncharacterized protei 50.2 90 0.002 26.3 7.1 32 338-372 41-72 (94)
28 COG5178 PRP8 U5 snRNP spliceos 50.0 14 0.0003 43.8 3.1 6 192-197 59-64 (2365)
29 PF07462 MSP1_C: Merozoite sur 48.6 29 0.00063 37.9 5.1 34 90-123 208-241 (574)
30 KOG1923 Rac1 GTPase effector F 46.0 39 0.00084 38.3 5.7 11 256-266 402-412 (830)
31 PF06865 DUF1255: Protein of u 45.9 1.5E+02 0.0033 25.2 8.1 71 288-372 2-72 (94)
32 PF00726 IL10: Interleukin 10 43.5 29 0.00064 32.3 3.8 90 9-116 32-123 (170)
33 PF07462 MSP1_C: Merozoite sur 42.6 1.1E+02 0.0023 33.7 8.2 15 88-102 235-249 (574)
34 PF10988 DUF2807: Protein of u 40.8 2.6E+02 0.0056 24.7 12.4 55 298-352 105-160 (181)
35 PF07873 YabP: YabP family; I 39.3 1.5E+02 0.0031 23.0 6.6 61 231-303 2-65 (66)
36 smart00246 WH2 Wiskott Aldrich 38.1 17 0.00038 24.0 1.0 20 176-198 2-21 (26)
37 PRK12270 kgd alpha-ketoglutara 38.0 1.5E+02 0.0033 35.1 8.9 10 85-95 17-26 (1228)
38 PHA02839 Il-24-like protein; P 35.9 40 0.00087 30.9 3.3 36 74-110 74-115 (156)
39 smart00188 IL10 Interleukin-10 30.7 85 0.0018 28.4 4.5 86 12-116 3-91 (137)
40 PRK09752 adhesin; Provisional 29.2 46 0.00099 39.6 3.1 10 289-298 1076-1085(1250)
41 KOG3397 Acetyltransferases [Ge 25.7 54 0.0012 31.3 2.4 8 40-47 48-55 (225)
42 PLN03132 NADH dehydrogenase (u 25.3 39 0.00085 36.2 1.6 16 262-277 143-158 (461)
43 PF14734 DUF4469: Domain of un 23.5 2.1E+02 0.0045 24.5 5.4 66 310-382 21-95 (102)
44 PF01353 GFP: Green fluorescen 21.5 59 0.0013 31.6 1.9 58 44-125 35-92 (219)
No 1
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-140 Score=1053.94 Aligned_cols=375 Identities=45% Similarity=0.748 Sum_probs=334.7
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHhhcCC-CcccchhhHHHhhcceeeEEEecCCCCCCCCchhhHHhhhhhhHhHhh
Q 016407 2 LQKPDLVGLAEFLKPLNEVIMKANAMTEGRR-SDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSN 80 (390)
Q Consensus 2 ~kkP~~~~~~~lL~Pl~~~i~~v~~~ke~~r-s~~fnHLsavaEgi~~lgWv~~~~~~~g~~~P~~~V~e~~dsA~Fy~N 80 (390)
++||+..+|+++|+||++.|.+|++|||+|| |+|||||+||+||+++||||++++ +|++||+||+|+||||+|
T Consensus 99 ~qKPds~elad~LkPI~e~i~eI~~fkE~nRkS~~FNhLsav~e~i~algWVav~~------tP~p~vke~~daa~FY~N 172 (480)
T KOG2675|consen 99 KQKPDSNELADLLKPINEEIGEINNFKEKNRKSPFFNHLSAVSESIPALGWVAVKP------TPAPYVKEFKDAAQFYTN 172 (480)
T ss_pred ccCCChHHHHHHhhhHHHhhhHHhhhhhcccCchHHHHHHHHHhhcccceeEecCC------CCchHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999 999999999999999999999997 799999999999999999
Q ss_pred HHHhhhhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 016407 81 KILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSATGKTVTSAPAKAPSPTAPAHKPGAPAPPPPPPSSLF 160 (390)
Q Consensus 81 rVlkeyK~kd~~hv~Wv~~~~~l~l~~L~~YVk~~h~tGl~WN~~G~~~~~~~~~~~~~~~~~~~~~~PpPPPpPp~~~~ 160 (390)
|||||||++|+.||||||+|+.|| .+|++|||+||+|||+||..|..++++.+.+..+ .++++||||||||||++.+
T Consensus 173 rvLkEyk~~D~~hveWvKa~l~l~-~eL~~YVk~hhtTGl~W~~~g~~~~~~sa~~~~~--s~~g~PPPPPP~PPp~~~~ 249 (480)
T KOG2675|consen 173 RVLKEYKEKDPRHVEWVKAYLALF-LELQAYVKEHHTTGLVWNKDGGAAPDASASPKAA--SAPGAPPPPPPAPPPAPFF 249 (480)
T ss_pred HHHHHhccCChhHHHHHHHHHHHH-HHHHHHHHHhccccceecCCCCcccccccCcCcc--cCCCCCCCCCCCCCCcccc
Confidence 999999999999999999999986 8899999999999999999999888776532211 1122233333333333333
Q ss_pred CCcccccCCCCCccchhhhhhhhccCC-cccCccccCCcccc-cCCcccCCcccCCCCCC----CCCCCCCCCCCCCcee
Q 016407 161 SSEYSQASSSRPKEGMAAVFQEISSKP-VTAGLRKVTGDMKT-KNRADRSGVVAAGEKES----RTSSPSFSKAGPPKLE 234 (390)
Q Consensus 161 ~~~~~~~~~~~~~~~~~avFa~lN~G~-iT~gLkkV~~~~~T-KNp~lr~~~~~~~~~~~----~~~~~~~~~kkpp~~e 234 (390)
... ..+++++..++|+|||||||||| ||+||||||+|||| |||+||++++++...++ +++++.+++++||++|
T Consensus 250 ~~~-~~~~~~~~k~~~~AlFaqlNqGe~iTsgLkkVt~dmkThKNP~LR~~~~~~~~~~~~~~~~Psk~~~~~k~pp~~E 328 (480)
T KOG2675|consen 250 ADS-NPPSSDANKGGRGALFAQLNQGEGITSGLKKVTDDMKTHKNPNLRATSGVPASGPKQGSSSPSKSAAPKKKPPVKE 328 (480)
T ss_pred ccc-CCCCcccccccHHHHHHHHhccchhhhhhhhCChhhhcccChhhhccCCCCCCCCCCCCCCCCcccCCCCCCCcee
Confidence 322 21234556788999999999999 99999999999999 99999999876642111 2233456899999999
Q ss_pred eecCCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecceEEEEe
Q 016407 235 LQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQ 314 (390)
Q Consensus 235 l~~g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~ 314 (390)
|+ |+||+||||+|+.+++|++++++|+||||+|+|++|+|+||+|+|+||+|+|++||||++|+.+|||||++|+|||+
T Consensus 329 Le-GkkW~VEnq~~~~~~Vi~~~e~kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~ 407 (480)
T KOG2675|consen 329 LE-GKKWRVENQENNKNLVIDDAELKQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVM 407 (480)
T ss_pred ec-cceEEEeeecCCcceeeeeccccceEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEc
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEeccceEEEEccCCCCcEEEEeecceeeeecCCCCCCCCceeccCCceeEEEeeCCeeEEeeeccc
Q 016407 315 GSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHS 388 (390)
Q Consensus 315 g~vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf~t~~~~~klvt~~veh~ 388 (390)
|.+|||+|||||||+||||++||+|||+|||||+|||++|.+ |||||+||||||||+|.|++|||+|+++||+
T Consensus 408 g~~PtiSI~ktdGc~iYLSk~sL~~eIvtsKSsemNi~vp~~-~dgDy~EfpvPEQfkt~~~~~Klvt~v~ei~ 480 (480)
T KOG2675|consen 408 GSVPTISIDKTDGCHIYLSKDSLDCEIVTSKSSEMNINVPTN-EDGDYVEFPVPEQFKTKFNGGKLVTTVVEIA 480 (480)
T ss_pred ccCCeEEEecCCCeeEEeccccccceEEeecccceeEecccC-CCCCcccccChHHHhhhccCcEEEEeeeecC
Confidence 999999999999999999999999999999999999999976 6899999999999999999999999999996
No 2
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=100.00 E-value=7.8e-76 Score=577.85 Aligned_cols=204 Identities=42% Similarity=0.706 Sum_probs=108.6
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHhhcCC-CcccchhhHHHhhcceeeEEEecCCCCCCCCchhhHHhhhhhhHhHhh
Q 016407 2 LQKPDLVGLAEFLKPLNEVIMKANAMTEGRR-SDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSN 80 (390)
Q Consensus 2 ~kkP~~~~~~~lL~Pl~~~i~~v~~~ke~~r-s~~fnHLsavaEgi~~lgWv~~~~~~~g~~~P~~~V~e~~dsA~Fy~N 80 (390)
||||++.+|++||+||+++|++|++|||+|| |+|||||+||+|||++||||++++ +|++||+||+||||||+|
T Consensus 95 ~kKP~~~~~~~lL~Pl~~~i~~i~~~ke~nR~s~~fNHLsavsEgi~aLgWV~v~p------~P~~~V~e~~dsA~Fy~N 168 (312)
T PF01213_consen 95 CKKPDQSELQELLKPLSEAIQKIQEFKEKNRGSKFFNHLSAVSEGIPALGWVAVEP------KPAPYVKEMKDSAQFYTN 168 (312)
T ss_dssp BE---HHHHHHHCHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHCGGGGGGGGG--S-------HHHHHHHHHHHHHHHHH
T ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHhhheeeeeeeCC------chHhHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999998 999999999999999999999997 699999999999999999
Q ss_pred HHHhhhhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q 016407 81 KILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSATGKTVTSAPAKAPSPTAPAHKPGAPAPPPPPP-SSL 159 (390)
Q Consensus 81 rVlkeyK~kd~~hv~Wv~~~~~l~l~~L~~YVk~~h~tGl~WN~~G~~~~~~~~~~~~~~~~~~~~~~PpPPPpPp-~~~ 159 (390)
|||||||++|++||+||++|++|| ++|++|||+||+|||+||++|.++.++......+ ++.+++|||||||||| ++.
T Consensus 169 RVLke~K~kd~~hveWvks~~~l~-~~L~~YVke~httGl~WN~~G~~~~~~~~~~~~~-~~~~~~PpPPppPpPP~~~~ 246 (312)
T PF01213_consen 169 RVLKEYKEKDPKHVEWVKSFKALL-KELQAYVKEHHTTGLSWNPKGPDASEASAAPSPS-ASAPAAPPPPPPPPPPPAPL 246 (312)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHH-HHHHHHHHHHSTTS----TTS--BESSC---------------------------
T ss_pred HHHHHhhhccchhHHHHHHHHHHH-HHHHHHHHHhCccCcccCCccccchhhhhcccCC-ccccCCCCCCCCCCcccccc
Confidence 999999999999999999999975 9999999999999999999999887765332111 1111112222222222 222
Q ss_pred CCCcccccCCCCCccchhhhhhhhccCC-cccCccccCCcccc-cCCcccCCcccCC
Q 016407 160 FSSEYSQASSSRPKEGMAAVFQEISSKP-VTAGLRKVTGDMKT-KNRADRSGVVAAG 214 (390)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~avFa~lN~G~-iT~gLkkV~~~~~T-KNp~lr~~~~~~~ 214 (390)
+..... ++.+.++++|+|||||||||+ ||+||||||+|||| |||+||++++++.
T Consensus 247 ~~~~~~-~~~~~~~~~~~AlFaeLN~G~~iT~gLkKV~~~~~THKNP~LR~~~~~~~ 302 (312)
T PF01213_consen 247 FSESAP-AAPSDSSGGMSALFAELNQGEDITKGLKKVTKDMMTHKNPALRAQSPVPP 302 (312)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccCC-cccccccccHHHHHHHHhccCccccCCcccCcchhcccCcccccCCCCCC
Confidence 221111 122334678999999999999 99999999999999 9999999877654
No 3
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.
Probab=100.00 E-value=3e-64 Score=453.78 Aligned_cols=159 Identities=52% Similarity=0.905 Sum_probs=137.3
Q ss_pred CCCCceeeecCCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeec
Q 016407 228 AGPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCN 307 (390)
Q Consensus 228 kkpp~~el~~g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~ 307 (390)
||||++||+ |+||+||||+|+.++++++++|+|+||||+|+|++|+|+||+|+|+|++|+|++|+||++||++||+||+
T Consensus 1 kkP~~~el~-g~kW~Ve~~~~~~~~~~~~~~~~qsVyI~~C~n~~i~IkgKvnsItid~C~k~~vv~ds~Is~vEvinc~ 79 (159)
T PF08603_consen 1 KKPPKKELD-GNKWFVENQENNKELVIEEVEMKQSVYIYNCKNSTIQIKGKVNSITIDNCKKCSVVFDSVISSVEVINCK 79 (159)
T ss_dssp ----EEEEE-TTEEEEECEBS-SSEEEEE--TT-EEEEEEEESEEEEEESEBSEEEEEEEEEEEEEECEBSSEEEEESEE
T ss_pred CCCCeEEec-CCEEEEEeccCCCCceEeccCCCcEEEEEcccccEEEECceEEEEEEEcCCcEEEEEcCEEEEEEEEecC
Confidence 699999997 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecccceEEEEeccceEEEEccCCCCcEEEEeecceeeeecCCCCCCCCceeccCCceeEEEeeCCeeEEeeecc
Q 016407 308 GVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSH 387 (390)
Q Consensus 308 ~~~vQv~g~vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf~t~~~~~klvt~~veh 387 (390)
+++|||+|.||||+||||||++||||+++++++|+|||||+|||+||++ |||||+|+||||||+|+|++|||+|+++||
T Consensus 80 ~~~vQv~g~vPti~iDktdg~~iyLsk~s~~~eivtskss~mNv~~p~~-~~~D~~E~piPEQf~~~~~~~kl~t~~~~~ 158 (159)
T PF08603_consen 80 SVQVQVLGKVPTISIDKTDGCQIYLSKESLDTEIVTSKSSEMNVNVPDG-EDGDYVEHPIPEQFKTTIKGGKLVTEVVEH 158 (159)
T ss_dssp EEEEEESS--SEEEEES-EEEEEE--CCCTT-EEEEES-EEEEEEEECS-CTTEEEEEEE--EEEEEECCTEEEEEEE--
T ss_pred cEeEEEEccCCEEEEeccccEEEEECcccccEEEEEEccccEEEEecCC-CCCCceeCCCchhEEEEEECCEEEEEEEec
Confidence 9999999999999999999999999999999999999999999999976 689999999999999999999999999999
Q ss_pred c
Q 016407 388 S 388 (390)
Q Consensus 388 ~ 388 (390)
|
T Consensus 159 ~ 159 (159)
T PF08603_consen 159 A 159 (159)
T ss_dssp -
T ss_pred C
Confidence 7
No 4
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=99.00 E-value=7e-09 Score=106.13 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=66.9
Q ss_pred EEEeeEeceEEeecccceEEEEeeeeeeEEEEeecceEEEEecccceEEEEeccceEEE-------EccCCC-CcEEEEe
Q 016407 273 LQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLY-------LSQDSL-GASITTA 344 (390)
Q Consensus 273 I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~vPtI~IdKsd~~~vy-------Ls~~sl-~~eI~ts 344 (390)
|..-.+-.+|.|.+|.++.|+|.++|++|.++||+++.|.+.+.|-.+.|.+|..++|+ ||.+.. +|.||.|
T Consensus 347 i~~~e~kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~PtiSI~ktdGc~iYLS 426 (480)
T KOG2675|consen 347 IDDAELKQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVPTISIDKTDGCHIYLS 426 (480)
T ss_pred eeeccccceEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEcccCCeEEEecCCCeeEEec
Confidence 33334555999999999999999999999999999999999999999999999999999 677766 5999999
Q ss_pred ecc
Q 016407 345 KSS 347 (390)
Q Consensus 345 kss 347 (390)
|.|
T Consensus 427 k~s 429 (480)
T KOG2675|consen 427 KDS 429 (480)
T ss_pred ccc
Confidence 965
No 5
>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product.
Probab=98.51 E-value=1.7e-07 Score=65.20 Aligned_cols=37 Identities=43% Similarity=0.763 Sum_probs=19.7
Q ss_pred ccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEE
Q 016407 268 CKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIV 304 (390)
Q Consensus 268 C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevi 304 (390)
|++++|+|.||+++|+||+|+++.|.|+.+.++++|+
T Consensus 1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~ 37 (38)
T smart00673 1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIV 37 (38)
T ss_pred CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEE
Confidence 4555555555555555555555555555555555554
No 6
>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product.
Probab=98.48 E-value=1.9e-07 Score=64.92 Aligned_cols=37 Identities=32% Similarity=0.556 Sum_probs=34.9
Q ss_pred ecceEEEEecccceEEEEeccceEEEEccCCCCcEEE
Q 016407 306 CNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASIT 342 (390)
Q Consensus 306 c~~~~vQv~g~vPtI~IdKsd~~~vyLs~~sl~~eI~ 342 (390)
|++++||+.|.+|+|.||||++++|||++.+..++|+
T Consensus 1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~ 37 (38)
T smart00673 1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIV 37 (38)
T ss_pred CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEE
Confidence 8899999999999999999999999999998888875
No 7
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.
Probab=98.29 E-value=3.8e-06 Score=76.69 Aligned_cols=79 Identities=15% Similarity=0.258 Sum_probs=52.2
Q ss_pred EEeeEec-eEEeecccceEEEEeeeeeeEEEEeecceEEEEecccceEEEEeccceEEEEccCCCCcEEEEeecceeeee
Q 016407 274 QIQGKVN-NITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVL 352 (390)
Q Consensus 274 ~IkgKvn-sIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~ 352 (390)
..+...+ +|.|.+|+++.|++.+++.+|.|++|+++.|.+.+.+.++.|-+|.++++++.- .+ -.|..-||+.++|.
T Consensus 26 ~~~~~~~qsVyI~~C~n~~i~IkgKvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g-~v-Pti~iDktdg~~iy 103 (159)
T PF08603_consen 26 IEEVEMKQSVYIYNCKNSTIQIKGKVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLG-KV-PTISIDKTDGCQIY 103 (159)
T ss_dssp EEE--TT-EEEEEEEESEEEEEESEBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS----SEEEEES-EEEEEE
T ss_pred EeccCCCcEEEEEcccccEEEECceEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEc-cC-CEEEEeccccEEEE
Confidence 3444455 888888888888888888888888888888888888888888888888888531 11 12333444555544
Q ss_pred cC
Q 016407 353 VP 354 (390)
Q Consensus 353 vP 354 (390)
+-
T Consensus 104 Ls 105 (159)
T PF08603_consen 104 LS 105 (159)
T ss_dssp --
T ss_pred EC
Confidence 43
No 8
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=98.07 E-value=2.6e-05 Score=67.34 Aligned_cols=104 Identities=18% Similarity=0.392 Sum_probs=72.1
Q ss_pred ceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecceEEEEecccceEEEEeccceEEEEccCCCCcE
Q 016407 261 QSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGAS 340 (390)
Q Consensus 261 qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~vPtI~IdKsd~~~vyLs~~sl~~e 340 (390)
+.+.|.+|++++|.+.+.+.++.|++|+++.|++-.+-+++-+-+|++..|.+... .+-|-.|.++++||.-.+ .-
T Consensus 2 ~~~~i~n~~~c~I~l~~~~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~~~~--QlRih~~~n~~~~l~~~s--~p 77 (120)
T PF07986_consen 2 SDVTISNCSNCTIYLLDPLSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIVACR--QLRIHNSTNCTFYLHTNS--RP 77 (120)
T ss_dssp -EEEEES-BS-EEEE-S-BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEEEEC--EEEEES-ECEEEEEEESS--EE
T ss_pred CcEEEecCcCCEEEeCCCcceEEEeCCCCCEEEEeecCceEEEecCCceEEEEEcC--CeEEccccceEEEEECCC--Cc
Confidence 57899999999999999999999999999999998889999999999999998766 999999999999988654 22
Q ss_pred EEEeecceeee-----ecCCCCCCCCceeccCCcee
Q 016407 341 ITTAKSSEINV-----LVPGAGPDSDWAEHALPQQF 371 (390)
Q Consensus 341 I~tskss~~Nv-----~vP~~~e~~d~~E~piPEQf 371 (390)
|+ ..|+.|-+ .+|.- ++++.+..++...
T Consensus 78 iI-E~~~~i~fapy~~~y~~l--~~~l~~~~l~~~~ 110 (120)
T PF07986_consen 78 II-EDCTGITFAPYNTHYPNL--EEHLQRAGLDPEE 110 (120)
T ss_dssp EE-ES-ECEEEEE---B-TTC--HHHHHHCT--TT-
T ss_pred EE-eCCCCCEEEeCcccCcCH--HHHHHHcCCCchh
Confidence 33 55555544 34532 3566666666543
No 9
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=96.99 E-value=0.013 Score=50.53 Aligned_cols=87 Identities=16% Similarity=0.303 Sum_probs=59.3
Q ss_pred CCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeEec-eEEeecccceEEEEeeeeeeEEEEeecceEEEEecc
Q 016407 238 GRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVN-NITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGS 316 (390)
Q Consensus 238 g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvn-sIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~ 316 (390)
|+.-.++|-++ ..|.+ ...-.+++|.+|++++|.+ |-+. +|.|++|.++.|++.. ..+.+-+|.++.+.+...
T Consensus 1 g~~~~i~n~~~-c~I~l--~~~~~~v~i~~~~~c~i~~-g~v~gsv~i~~c~n~~i~~~~--~QlRih~~~n~~~~l~~~ 74 (120)
T PF07986_consen 1 GSDVTISNCSN-CTIYL--LDPLSSVHIDNCKNCTIVL-GPVSGSVFIENCENCTIIVAC--RQLRIHNSTNCTFYLHTN 74 (120)
T ss_dssp T-EEEEES-BS--EEEE---S-BS-EEEES-BS-EEEE-EEECCEEEEES-ECEEEEEEE--CEEEEES-ECEEEEEEES
T ss_pred CCcEEEecCcC-CEEEe--CCCcceEEEeCCCCCEEEE-eecCceEEEecCCceEEEEEc--CCeEEccccceEEEEECC
Confidence 45566777765 34444 4677889999999999988 6777 9999999999999765 489999999999977655
Q ss_pred cceEEEEeccceEEE
Q 016407 317 APTISVDNTGGCQLY 331 (390)
Q Consensus 317 vPtI~IdKsd~~~vy 331 (390)
-+ ..|..|.++++.
T Consensus 75 s~-piIE~~~~i~fa 88 (120)
T PF07986_consen 75 SR-PIIEDCTGITFA 88 (120)
T ss_dssp SE-EEEES-ECEEEE
T ss_pred CC-cEEeCCCCCEEE
Confidence 43 344888888876
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.24 E-value=0.13 Score=57.13 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.4
Q ss_pred CCceeccCCceeEEEee
Q 016407 360 SDWAEHALPQQFVHTYK 376 (390)
Q Consensus 360 ~d~~E~piPEQf~t~~~ 376 (390)
.+|.++|=||||.+++-
T Consensus 756 aeye~l~e~EQF~vvm~ 772 (1102)
T KOG1924|consen 756 AEYEDLPEPEQFVVVMS 772 (1102)
T ss_pred HhccCCCCHHHHhHHHh
Confidence 57899999999998753
No 11
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=92.84 E-value=0.16 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.8
Q ss_pred chhhhhhhhccCCcccCccccCCccc
Q 016407 175 GMAAVFQEISSKPVTAGLRKVTGDMK 200 (390)
Q Consensus 175 ~~~avFa~lN~G~iT~gLkkV~~~~~ 200 (390)
++++|+|+|.|| -+||||++.+-
T Consensus 494 gR~~LmaqIRqG---~~Lk~v~~~~~ 516 (569)
T KOG3671|consen 494 GRDALMAQIRQG---GQLKKVDSRKL 516 (569)
T ss_pred cHHHHHHHHHhc---ccccccchhhh
Confidence 699999999999 68999988654
No 12
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.83 E-value=0.4 Score=53.60 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=20.9
Q ss_pred CeEEEEeecCCcc-eEEecCCCcceEEEEcccCceE
Q 016407 239 RKWVVENQIGRKN-LVIDDCDAKQSVYVFGCKDSVL 273 (390)
Q Consensus 239 ~kW~VEn~~~~~~-~vi~~~~~~qsV~I~~C~~~~I 273 (390)
+.|-+|+.-..-+ ..|.-.+|.+-.|-.+|+...+
T Consensus 618 K~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~ 653 (1102)
T KOG1924|consen 618 KVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKL 653 (1102)
T ss_pred ccCCCCCccccCCccccCccccCccceeeecchhhc
Confidence 5566666553322 2355567888778777775543
No 13
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=92.69 E-value=0.09 Score=53.79 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=16.8
Q ss_pred cchhhhhhhhccCCcccCccccC
Q 016407 174 EGMAAVFQEISSKPVTAGLRKVT 196 (390)
Q Consensus 174 ~~~~avFa~lN~G~iT~gLkkV~ 196 (390)
++++||+.+|.|| +-|||++
T Consensus 29 egR~ALL~DI~KG---~KLKK~~ 48 (437)
T KOG4462|consen 29 EGRNALLGDIQKG---KKLKKAT 48 (437)
T ss_pred cchHHHHHHhhhc---ceeccee
Confidence 4899999999999 5677775
No 14
>KOG4416 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=0.26 Score=52.35 Aligned_cols=76 Identities=20% Similarity=0.328 Sum_probs=66.8
Q ss_pred cCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecceEEEEecccceEEEEeccceEEEEc
Q 016407 256 DCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLS 333 (390)
Q Consensus 256 ~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~vPtI~IdKsd~~~vyLs 333 (390)
.....-+|.|-+|+.+.|.+=.-.-.+++.+|.+..+||..+=-++-+-+|.+|.+.+--. -|.|..|++|-+|+.
T Consensus 330 ~~lkg~sVkv~~Cnes~iyLl~plr~~tv~~c~~s~~Vlg~agkt~~~h~c~rV~vi~~~~--Ri~I~~~~ecvff~~ 405 (605)
T KOG4416|consen 330 SDLKGRSVKVPNCNESVIYLLAPLRYATVFGCSDSTIVLGAAGKTTKVHHCERVHVIVAIK--RICIANCRECVFFLG 405 (605)
T ss_pred hhhccceeeecccchhhhhhhcCcceeeeeccCCceEEEecccceeeeccccceEEEEEee--eEEEecccceEEEec
Confidence 4567789999999999999888889999999999999999988899999999998776544 899999999988854
No 15
>PF02205 WH2: WH2 motif; InterPro: IPR003124 The WH2 (WASP-Homology 2, or Wiskott-Aldrich homology 2) domain is an ~18 amino acids actin-binding motif. This domain was first recognised as an essential element for the regulation of the cytoskeleton by the mammalian Wiskott-Aldrich syndrome protein (WASP) family. WH2 proteins occur in eukaryotes from yeast to mammals, in insect viruses, and in some bacteria. The WH2 domain is found as a modular part of larger proteins; it can be associated with the WH1 or EVH1 domain and with the CRIB domain, and the WH2 domain can occur as a tandem repeat. The WH2 domain binds actin monomers and can facilitate the assembly of actin monomers into newly forming actin filaments [, ]. ; GO: 0005515 protein binding; PDB: 2D1K_C 3M1F_V 2A41_C 2A3Z_C 2VCP_E 2A40_F 3P8C_D 3M3N_W.
Probab=80.63 E-value=0.39 Score=32.42 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=17.4
Q ss_pred cchhhhhhhhccCCcccCccccCC
Q 016407 174 EGMAAVFQEISSKPVTAGLRKVTG 197 (390)
Q Consensus 174 ~~~~avFa~lN~G~iT~gLkkV~~ 197 (390)
+++++|+++|.+|. ...||||+.
T Consensus 3 ~~R~~LL~~Ir~G~-k~~LKkv~~ 25 (30)
T PF02205_consen 3 DGRSALLSQIRKGS-KAQLKKVDE 25 (30)
T ss_dssp TTHHHHHHHHHHH---HHHBHTSS
T ss_pred CcHHHHHHHHHHcc-cccccCCCC
Confidence 46999999999986 335999954
No 16
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=80.00 E-value=0.56 Score=47.43 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=2.5
Q ss_pred cCCCCCcc
Q 016407 122 WSATGKTV 129 (390)
Q Consensus 122 WN~~G~~~ 129 (390)
|-..|..-
T Consensus 202 ~httGl~W 209 (312)
T PF01213_consen 202 HHTTGLSW 209 (312)
T ss_dssp HSTTS---
T ss_pred hCccCccc
Confidence 44555433
No 17
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=71.83 E-value=3.5 Score=39.06 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 016407 11 AEFLKPLNEVIM 22 (390)
Q Consensus 11 ~~lL~Pl~~~i~ 22 (390)
.+||+...+.|+
T Consensus 22 PELlk~~~~LIN 33 (225)
T KOG3397|consen 22 PELLKESMTLIN 33 (225)
T ss_pred HHHHHHHHHHHh
Confidence 466666655554
No 18
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=71.68 E-value=4.7 Score=43.31 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=16.4
Q ss_pred ccchhhhhhhhccCCcccCccccC
Q 016407 173 KEGMAAVFQEISSKPVTAGLRKVT 196 (390)
Q Consensus 173 ~~~~~avFa~lN~G~iT~gLkkV~ 196 (390)
.++|.||.++|..|. -||+|+
T Consensus 465 p~~~~al~~~i~~G~---ql~~ve 485 (569)
T KOG3671|consen 465 PPARPALLDAIAPGG---QLKKVE 485 (569)
T ss_pred CCCccccccccCccc---ccccee
Confidence 456999999999983 577774
No 19
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=60.98 E-value=6.3 Score=46.37 Aligned_cols=8 Identities=50% Similarity=1.086 Sum_probs=4.8
Q ss_pred eeeeecCC
Q 016407 348 EINVLVPG 355 (390)
Q Consensus 348 ~~Nv~vP~ 355 (390)
..|+-+|+
T Consensus 290 aln~aipg 297 (2365)
T COG5178 290 ALNVAIPG 297 (2365)
T ss_pred hhcccCCC
Confidence 45666664
No 20
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=60.85 E-value=71 Score=26.35 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=42.8
Q ss_pred CCCCceeeecCCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeE---eceEEeecccceEEEEeeeeeeEEE
Q 016407 228 AGPPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGK---VNNITIDKCTKMGVVFKDVVAAFEI 303 (390)
Q Consensus 228 kkpp~~el~~g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgK---vnsIsid~C~k~~vv~ds~Vssvev 303 (390)
-.-|+..+.+.+.=.||||.+- +.+ ....-..+|....+.|+|+ ++.++. -.+.+++.|.+++.
T Consensus 17 ~~~p~itl~gr~~~~Ien~k~I--~~y-----~~~~I~l~t~~G~l~I~G~~L~I~~l~~-----~ei~I~G~I~si~y 83 (85)
T TIGR02856 17 LDLPRITLIGNEHIYIENHRGL--VVF-----SPEEVKLNSTNGKITIEGKNFVIKFILP-----EEILLEGKIKSVRY 83 (85)
T ss_pred cCCCEEEEECCcEEEEECccce--EEE-----CCCEEEEEcCceEEEEEcccEEEeeeec-----cEEEEEEEEEEEEE
Confidence 4558999985568899999762 122 2334456778888888885 344444 36778888877764
No 21
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=60.63 E-value=5.5 Score=42.04 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=21.3
Q ss_pred chhhhhhhhccCCcccCccccCCcccc--cCCcc
Q 016407 175 GMAAVFQEISSKPVTAGLRKVTGDMKT--KNRAD 206 (390)
Q Consensus 175 ~~~avFa~lN~G~iT~gLkkV~~~~~T--KNp~l 206 (390)
.++-|+++|.+| =-||||.+...- |+-.+
T Consensus 455 aRsdLL~aIr~G---iqLrKVeeqreqeakr~~v 485 (518)
T KOG1830|consen 455 ARSDLLAAIRSG---IQLRKVEEQREQEAKREAV 485 (518)
T ss_pred hHHHHHHHHHhc---chhHHHHHHHHHHHhhccc
Confidence 388999999998 368999776544 65443
No 22
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=57.99 E-value=8.6 Score=37.92 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=8.5
Q ss_pred cceeeEEEecCCCC
Q 016407 46 LTALAWIAYTGKDC 59 (390)
Q Consensus 46 i~~lgWv~~~~~~~ 59 (390)
+..++||+-+...|
T Consensus 56 lADv~wva~de~~~ 69 (253)
T PF05308_consen 56 LADVLWVANDEEES 69 (253)
T ss_pred hhhhcceecccccc
Confidence 34467998766443
No 23
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=55.26 E-value=9.3 Score=40.74 Aligned_cols=14 Identities=14% Similarity=0.167 Sum_probs=9.7
Q ss_pred cCccccCCcccc-cC
Q 016407 190 AGLRKVTGDMKT-KN 203 (390)
Q Consensus 190 ~gLkkV~~~~~T-KN 203 (390)
..+|++.++.++ .|
T Consensus 61 q~~~yiEdE~~~~~~ 75 (465)
T PF01690_consen 61 QRMRYIEDENWNWVN 75 (465)
T ss_pred eeEEEEecccceeEE
Confidence 457788887777 54
No 24
>KOG4416 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.65 E-value=25 Score=38.01 Aligned_cols=67 Identities=25% Similarity=0.429 Sum_probs=48.8
Q ss_pred CCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecce
Q 016407 238 GRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGV 309 (390)
Q Consensus 238 g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~ 309 (390)
|.---|-|- .+.+|-=...--.+.||+|.+++|+.-.--.++-+.+|.++.+++ .+..++|-||..+
T Consensus 334 g~sVkv~~C---nes~iyLl~plr~~tv~~c~~s~~Vlg~agkt~~~h~c~rV~vi~--~~~Ri~I~~~~ec 400 (605)
T KOG4416|consen 334 GRSVKVPNC---NESVIYLLAPLRYATVFGCSDSTIVLGAAGKTTKVHHCERVHVIV--AIKRICIANCREC 400 (605)
T ss_pred cceeeeccc---chhhhhhhcCcceeeeeccCCceEEEecccceeeeccccceEEEE--EeeeEEEecccce
Confidence 555445441 233433345667899999999988766555699999999988875 5778999999984
No 25
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=52.12 E-value=11 Score=40.17 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=10.3
Q ss_pred cCCCcceEEEEcccCceEE
Q 016407 256 DCDAKQSVYVFGCKDSVLQ 274 (390)
Q Consensus 256 ~~~~~qsV~I~~C~~~~I~ 274 (390)
+.+.+..=.|++-++|+|.
T Consensus 131 ~~~~~~~WnvG~y~g~~It 149 (465)
T PF01690_consen 131 DNSSSDGWNVGNYNGCTIT 149 (465)
T ss_pred cCccccccccccccCcEEe
Confidence 3444455556666666654
No 26
>KOG2512 consensus Beta-tubulin folding cofactor C [Posttranslational modification, protein turnover, chaperones]
Probab=51.95 E-value=6.2 Score=40.29 Aligned_cols=104 Identities=13% Similarity=0.221 Sum_probs=79.3
Q ss_pred eEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecceEEEEecccce
Q 016407 240 KWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPT 319 (390)
Q Consensus 240 kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~vPt 319 (390)
-|..-+..++.++....-...+.|.+..=.++.+.+-|-+|++.+.+-++|++.+--...++-+-+|...-+-+-+. .
T Consensus 176 ~~~~~~~n~e~~vl~~p~~~~~~~~~~~l~~c~v~l~g~~~a~~l~ratkcs~l~~p~~gsi~~~d~~D~~l~~ac~--q 253 (337)
T KOG2512|consen 176 GWTPANRNPEDNVLVVPEVTQEEVTASELSSCAVRLIGPPSAVFLHRATKCSLLCGPFAGSIFISDAEDCTLEVACH--Q 253 (337)
T ss_pred cccccccCCCCceEEcCCcccchhhHHHhhhcceeEecCCCcceeccccccccccCceeeeeeccchHHHHHHHHHh--h
Confidence 78777777665544433344555666666677788999999999999999999999999999999998887666555 7
Q ss_pred EEEEeccceEEEEccCCCCcEEEEeec
Q 016407 320 ISVDNTGGCQLYLSQDSLGASITTAKS 346 (390)
Q Consensus 320 I~IdKsd~~~vyLs~~sl~~eI~tsks 346 (390)
+-+-.+.+.+|||--.+. +.|.-||.
T Consensus 254 lrlh~tk~~rv~l~~~~r-~iiedsk~ 279 (337)
T KOG2512|consen 254 LRLHSTKEVRVYLRVTSR-PIIEDSKG 279 (337)
T ss_pred eeeEeeccceEEEEeccc-ceeecccC
Confidence 888889999999876553 44555554
No 27
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.15 E-value=90 Score=26.35 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=28.5
Q ss_pred CcEEEEeecceeeeecCCCCCCCCceeccCCceeE
Q 016407 338 GASITTAKSSEINVLVPGAGPDSDWAEHALPQQFV 372 (390)
Q Consensus 338 ~~eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf~ 372 (390)
..||.|.-+.+++|.+|+ ++||.++.-=|+|-
T Consensus 41 ~~E~Mtvv~Gal~v~lpg---s~dWq~~~~Ge~F~ 72 (94)
T COG3123 41 APEEMTVVSGALTVLLPG---SDDWQVYTAGEVFN 72 (94)
T ss_pred CceEEEEEeeEEEEEcCC---CcccEEecCCceEE
Confidence 468999999999999995 58999999999996
No 28
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=49.98 E-value=14 Score=43.77 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.5
Q ss_pred ccccCC
Q 016407 192 LRKVTG 197 (390)
Q Consensus 192 LkkV~~ 197 (390)
||+-++
T Consensus 59 ~r~S~k 64 (2365)
T COG5178 59 LRVSDK 64 (2365)
T ss_pred eecccc
Confidence 444443
No 29
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=48.59 E-value=29 Score=37.85 Aligned_cols=34 Identities=9% Similarity=0.165 Sum_probs=24.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhCCCCcccC
Q 016407 90 DPNHVEWARALKELYLPGLRDYVKSHYPLGPVWS 123 (390)
Q Consensus 90 d~~hv~Wv~~~~~l~l~~L~~YVk~~h~tGl~WN 123 (390)
....+-++.+.+-=+|++|..-|+.--=||=.-.
T Consensus 208 eKenIsYlSsgLhHv~tElKeii~nK~YtG~~~~ 241 (574)
T PF07462_consen 208 EKENISYLSSGLHHVFTELKEIIKNKKYTGNDHA 241 (574)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHhcCCCCCCChh
Confidence 4566778887776667999999997666654443
No 30
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=45.99 E-value=39 Score=38.33 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=4.6
Q ss_pred cCCCcceEEEE
Q 016407 256 DCDAKQSVYVF 266 (390)
Q Consensus 256 ~~~~~qsV~I~ 266 (390)
|.++...+|..
T Consensus 402 D~~~~ee~Fk~ 412 (830)
T KOG1923|consen 402 DFSRFEEQFKI 412 (830)
T ss_pred hHHHHHHHHHh
Confidence 34444444433
No 31
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=45.85 E-value=1.5e+02 Score=25.17 Aligned_cols=71 Identities=18% Similarity=0.313 Sum_probs=43.3
Q ss_pred cceEEEEeeeeeeEEEEeecceEEEEecccceEEEEeccceEEEEccCCCCcEEEEeecceeeeecCCCCCCCCceeccC
Q 016407 288 TKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHAL 367 (390)
Q Consensus 288 ~k~~vv~ds~Vssvevinc~~~~vQv~g~vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~vP~~~e~~d~~E~pi 367 (390)
+|.++-||+.|.|..+..-+.-.- ..|.+ .. +..-++-+ ..|+.+--|.++.|.+|+ ++||..+.=
T Consensus 2 ~kaN~YFdGkV~S~~~~~~dG~~~-TlGVm-----~p---GeY~F~T~--~~E~M~vvsG~l~V~lpg---~~ew~~~~a 67 (94)
T PF06865_consen 2 KKANVYFDGKVKSITFEFADGSKK-TLGVM-----LP---GEYTFGTS--APERMEVVSGELEVKLPG---EDEWQTYSA 67 (94)
T ss_dssp SCEEEECCCTEEEEEEEETTSEEE-EEEEE------S---ECEEEEES--S-EEEEEEESEEEEEETT----SS-EEEET
T ss_pred cceeEEeCCeEEEEEEEcCCCCcc-eEEEE-----ee---eEEEEcCC--CCEEEEEEEeEEEEEcCC---CcccEEeCC
Confidence 466778888888888777663331 22221 00 11112222 367888888999999995 579999999
Q ss_pred CceeE
Q 016407 368 PQQFV 372 (390)
Q Consensus 368 PEQf~ 372 (390)
.|+|.
T Consensus 68 GesF~ 72 (94)
T PF06865_consen 68 GESFE 72 (94)
T ss_dssp T-EEE
T ss_pred CCeEE
Confidence 99997
No 32
>PF00726 IL10: Interleukin 10 This family is a subset of the SCOP family; InterPro: IPR020443 Interleukin-10 (IL-10) is a protein that inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells. Structurally, IL-10 is a protein of about 160 amino acids that contains four conserved cysteines involved in disulphide bonds []. IL-10 is highly similar to the Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BCRF1 protein which inhibits the synthesis of gamma-interferon and to Equid herpesvirus 2 (Equine herpesvirus 2) protein E7. It is also similar, but to a lesser degree, with human protein mda-7 [], a protein which has antiproliferative properties in human melanoma cells. Mda-7 only contains two of the four cysteines of IL-10.; PDB: 1VLK_A 1Y6N_L 1Y6M_L 2ILK_A 1LK3_A 2H24_A 1J7V_L 1ILK_A 1Y6K_L 1INR_A ....
Probab=43.52 E-value=29 Score=32.27 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCcccchh--hHHHhhcceeeEEEecCCCCCCCCchhhHHhhhhhhHhHhhHHHhhh
Q 016407 9 GLAEFLKPLNEVIMKANAMTEGRRSDFFNHL--KSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEY 86 (390)
Q Consensus 9 ~~~~lL~Pl~~~i~~v~~~ke~~rs~~fnHL--savaEgi~~lgWv~~~~~~~g~~~P~~~V~e~~dsA~Fy~NrVlkey 86 (390)
.+...|+-|.....+|..+=+.+. ++-|=| +.+-+.+. + +-=.-++.++ -+||-+||++.|
T Consensus 32 ~~~~~L~eLr~~F~~Ik~~~q~~D-~~~~iLl~~~ll~~~k--------~-----~~~C~~~~~l---L~FYLd~Vfp~~ 94 (170)
T PF00726_consen 32 SFPVMLQELRAAFSEIKDFFQAKD-DIDNILLDKSLLQDFK--------G-----PDGCCFLSEL---LRFYLDRVFPNA 94 (170)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCS-SSTS-SSTHHHHHHHH--------S-----TTHHHHHHHH---HHHHHHTHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHhhccC-chhhhhccHHHHHhcC--------C-----CCccHHHHHH---HHHHHHHHcccc
Confidence 577888888988888877755532 222211 11111111 0 0012334443 489999999999
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHHHHHhC
Q 016407 87 RSKDPNHVEWARALKELYLPGLRDYVKSHY 116 (390)
Q Consensus 87 K~kd~~hv~Wv~~~~~l~l~~L~~YVk~~h 116 (390)
.+.++....=+.++.+.| ..|+.-++.-|
T Consensus 95 ~~~~~~~~~~isslansf-~~lk~~L~~C~ 123 (170)
T PF00726_consen 95 QEHDPDIKRKISSLANSF-LSLKKDLRQCH 123 (170)
T ss_dssp HCHSGGGHHHHHHHHHHH-HHHHHHHHCST
T ss_pred cccCCchhhhHHHHHHHH-HHHHHHHHHhH
Confidence 999998888888888875 77888888766
No 33
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=42.59 E-value=1.1e+02 Score=33.70 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=8.5
Q ss_pred ccCCCchHHHHHHHH
Q 016407 88 SKDPNHVEWARALKE 102 (390)
Q Consensus 88 ~kd~~hv~Wv~~~~~ 102 (390)
.....|.+=....+.
T Consensus 235 YtG~~~~~n~~~Vk~ 249 (574)
T PF07462_consen 235 YTGNDHAKNIAEVKE 249 (574)
T ss_pred CCCCChhhhHHHHHH
Confidence 445666665555553
No 34
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=40.79 E-value=2.6e+02 Score=24.74 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=26.7
Q ss_pred eeeEEEEeecceEEEEecccceEEEEeccceEEEEccC-CCCcEEEEeecceeeee
Q 016407 298 VAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQD-SLGASITTAKSSEINVL 352 (390)
Q Consensus 298 Vssvevinc~~~~vQv~g~vPtI~IdKsd~~~vyLs~~-sl~~eI~tskss~~Nv~ 352 (390)
+..+.+.-..+..+++.|.+-.+.+.-.....++...= +-++++-.+-++.+.|.
T Consensus 105 ~~~l~~~~~g~~~~~l~G~~~~l~i~~~g~~~~~~~~l~~~~~~v~~~g~g~~~v~ 160 (181)
T PF10988_consen 105 AKNLNLSVSGSGKITLSGKADELNIEISGSGKVDASKLVAENANVEASGSGDAKVN 160 (181)
T ss_dssp EEEEEEEEESSCEEEEEEEEEEEEEEEESSCEEEEEEEEEEEEEEEEESSCEEEEE
T ss_pred eeEEEEEecCceEEEEEEEEeeEEEEEccceEEEEeeeEEeeEEEEEEcceeEEEE
Confidence 33444444444445555666666665555555554321 11244444444444444
No 35
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=39.27 E-value=1.5e+02 Score=23.04 Aligned_cols=61 Identities=20% Similarity=0.418 Sum_probs=33.2
Q ss_pred CceeeecCCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeE---eceEEeecccceEEEEeeeeeeEEE
Q 016407 231 PKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGK---VNNITIDKCTKMGVVFKDVVAAFEI 303 (390)
Q Consensus 231 p~~el~~g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgK---vnsIsid~C~k~~vv~ds~Vssvev 303 (390)
|+.++.+.+.=.||||.+- +.++ ..-...++....+.|+|+ +..++.+. +.+.+.|.+++.
T Consensus 2 ~~i~l~g~~~l~Ien~k~I--~~f~-----~~~I~l~t~~g~l~I~G~~L~I~~l~~e~-----i~I~G~I~~i~y 65 (66)
T PF07873_consen 2 PRITLVGRKELYIENHKGI--LSFD-----DEEIRLNTKKGKLTIKGEGLVIKYLNLEE-----IKIEGQIDSIEY 65 (66)
T ss_dssp ------S-EEEEECSEEEE--EEEE-----TTEEEEEETTEEEEEEEEEEEEEECETTT-----EEEEEEEEEEEE
T ss_pred CEEEEECCCEEEEECcccE--EEEC-----CCEEEEEeCCEEEEEECceEEEeEeeccE-----EEEEEEEEEEEE
Confidence 6777874467888998641 1222 223345677778888885 33444443 888888887764
No 36
>smart00246 WH2 Wiskott Aldrich syndrome homology region 2. Wiskott Aldrich syndrome homology region 2 / actin-binding motif
Probab=38.09 E-value=17 Score=23.99 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=15.5
Q ss_pred hhhhhhhhccCCcccCccccCCc
Q 016407 176 MAAVFQEISSKPVTAGLRKVTGD 198 (390)
Q Consensus 176 ~~avFa~lN~G~iT~gLkkV~~~ 198 (390)
+++|+++|.+| .-||||...
T Consensus 2 R~aLLa~Ir~G---~~LKkv~~~ 21 (26)
T smart00246 2 RSALLAQIRQG---KKLKKVXXX 21 (26)
T ss_pred cchhHHHHHcc---cccCccccc
Confidence 67899999998 467777543
No 37
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=37.97 E-value=1.5e+02 Score=35.10 Aligned_cols=10 Identities=50% Similarity=1.012 Sum_probs=6.4
Q ss_pred hhhccCCCchH
Q 016407 85 EYRSKDPNHVE 95 (390)
Q Consensus 85 eyK~kd~~hv~ 95 (390)
+|+. |++.|+
T Consensus 17 ~y~~-dp~sVd 26 (1228)
T PRK12270 17 QYLA-DPNSVD 26 (1228)
T ss_pred HHhc-CccccC
Confidence 3443 787776
No 38
>PHA02839 Il-24-like protein; Provisional
Probab=35.89 E-value=40 Score=30.86 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=25.5
Q ss_pred hhHhHhhHHHhhhhccC--CCchH----HHHHHHHHHHHHHHH
Q 016407 74 MAEFYSNKILVEYRSKD--PNHVE----WARALKELYLPGLRD 110 (390)
Q Consensus 74 sA~Fy~NrVlkeyK~kd--~~hv~----Wv~~~~~l~l~~L~~ 110 (390)
--.||-|||.|.|-+++ +.+.. -+.+|+-|. ++|+.
T Consensus 74 LLrFYLDrVFKnYqs~~~~~~ilRsiSSLANSFL~I~-K~lq~ 115 (156)
T PHA02839 74 MFELYLNDVFVKYTNTALKLNILKSLSSVANNFLAIF-NKVKK 115 (156)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34799999999999987 44433 566666654 66654
No 39
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=30.67 E-value=85 Score=28.43 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCC---CcccchhhHHHhhcceeeEEEecCCCCCCCCchhhHHhhhhhhHhHhhHHHhhhhc
Q 016407 12 EFLKPLNEVIMKANAMTEGRR---SDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRS 88 (390)
Q Consensus 12 ~lL~Pl~~~i~~v~~~ke~~r---s~~fnHLsavaEgi~~lgWv~~~~~~~g~~~P~~~V~e~~dsA~Fy~NrVlkeyK~ 88 (390)
-+|+-|..+..+|..+=+.+. .-+++- +.+.+--+.+| .-+..+| -+||-.+|+.++-.
T Consensus 3 ~~L~eLR~~f~~Ik~~~q~kD~~~~vll~~-~ll~~~k~~~g--------------C~~l~el---l~FYLd~V~p~a~~ 64 (137)
T smart00188 3 HMLRELRAAFSRVKTFFQMKDQLDNILLTE-SLLEDFKGYLG--------------CQALSEM---IQFYLEEVMPQAEN 64 (137)
T ss_pred hHHHHHHHHHHHHHHHHHccchHhhHhhhH-HHHHHhCCCcc--------------hHHHHHH---HHHHHHHHHHHHhc
Confidence 356667777777766633321 122222 22222222222 2334554 48999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHhC
Q 016407 89 KDPNHVEWARALKELYLPGLRDYVKSHY 116 (390)
Q Consensus 89 kd~~hv~Wv~~~~~l~l~~L~~YVk~~h 116 (390)
-++.+.+=+.++.+.| ..|+.-++..|
T Consensus 65 ~~~~~k~~i~Sl~~~f-~~lk~~l~~C~ 91 (137)
T smart00188 65 HGPDIKEHVNSLGEKL-KTLRLRLRRCH 91 (137)
T ss_pred CCcchhhhHHHHHHHH-HHHHHHHHHCc
Confidence 8999999888998875 88888887754
No 40
>PRK09752 adhesin; Provisional
Probab=29.23 E-value=46 Score=39.57 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=4.6
Q ss_pred ceEEEEeeee
Q 016407 289 KMGVVFKDVV 298 (390)
Q Consensus 289 k~~vv~ds~V 298 (390)
+...-||+..
T Consensus 1076 ~sG~YVD~wl 1085 (1250)
T PRK09752 1076 KQGAWLDSWL 1085 (1250)
T ss_pred cCceEEEEEE
Confidence 3444444444
No 41
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=25.68 E-value=54 Score=31.27 Aligned_cols=8 Identities=38% Similarity=0.401 Sum_probs=3.0
Q ss_pred hHHHhhcc
Q 016407 40 KSAADSLT 47 (390)
Q Consensus 40 savaEgi~ 47 (390)
.+-+++.+
T Consensus 48 ~~ScDs~P 55 (225)
T KOG3397|consen 48 KKSCDSPP 55 (225)
T ss_pred hcccCCCC
Confidence 33334433
No 42
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=25.26 E-value=39 Score=36.17 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=10.9
Q ss_pred eEEEEcccCceEEEee
Q 016407 262 SVYVFGCKDSVLQIQG 277 (390)
Q Consensus 262 sV~I~~C~~~~I~Ikg 277 (390)
+-|+.+.....|-|++
T Consensus 143 aa~avgA~~~~IyIr~ 158 (461)
T PLN03132 143 AGVGMRARAAYIYIRG 158 (461)
T ss_pred HHHHhCCCEEEEEEcc
Confidence 4456667777777776
No 43
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=23.48 E-value=2.1e+02 Score=24.51 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=41.0
Q ss_pred EEEEecccceEEEEeccc-eEEEEccCCCCc-------EEEEeecceeeeecCCCCCCCCceeccCCceeEEEeeC-Cee
Q 016407 310 EAQCQGSAPTISVDNTGG-CQLYLSQDSLGA-------SITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKD-GHF 380 (390)
Q Consensus 310 ~vQv~g~vPtI~IdKsd~-~~vyLs~~sl~~-------eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf~t~~~~-~kl 380 (390)
.+++.|. -+-|+-.|. +-|||-.+.-++ .|+-=+.|.+.+.+|.+-++|.|. +- .+|.+.+ +++
T Consensus 21 ~~~I~G~--~LKi~g~d~~~Gv~l~~~~~g~~~~v~~~~i~~N~ps~l~~~lPa~L~~G~Y~-l~----V~Tq~~~~~~~ 93 (102)
T PF14734_consen 21 PVRITGS--NLKIDGDDPSQGVFLVSDDEGTETKVPCSSIVRNKPSRLIFILPADLAAGEYT-LE----VRTQYSGGKKL 93 (102)
T ss_pred eEEEEee--EEEEecCCCceEEEEEcCCCCceEEecHHHeEeCCCcEEEEECcCccCceEEE-EE----EEEEecCCCee
Confidence 3566666 555665555 566766533332 467778999999999755688885 22 3466655 444
Q ss_pred EE
Q 016407 381 ET 382 (390)
Q Consensus 381 vt 382 (390)
.-
T Consensus 94 lK 95 (102)
T PF14734_consen 94 LK 95 (102)
T ss_pred ec
Confidence 33
No 44
>PF01353 GFP: Green fluorescent protein; InterPro: IPR011584 The green fluorescent protein (GFP) is found in the jellyfish (Aequorea victoria), and functions as an energy-transfer acceptor. It fluoresces in vivo upon receiving energy from the Ca2+-activated photoprotein aequorin. The protein absorbs light maximally at 395 nm and exhibits a smaller absorbance peak at 470 nm. The fluorescence emission spectrum peaks at 509 nm with a shoulder at 540 nm. The protein is produced in the photocytes and contains a chromophore, which is composed of modified amino acid residues. The chromophore is formed upon cyclization of the residues ser-dehydrotyr-gly. There are several other members of the GFP family, which are able to fluoresce different colours, sveral of which are non-fluorescent []. These proteins are all essentailly encoded by single genes, since both the substrate and the catalytic enzyme for pigment biosynthesis are provided within a single polypeptide chain []. More information about this protein can be found at Protein of the Month: Green Fluorescent Protein [].; GO: 0008218 bioluminescence; PDB: 2G16_B 1QYO_A 1W7S_B 3ED8_B 3GJ1_A 1GFL_B 3GJ2_C 2WSO_A 3DQD_A 2AWJ_A ....
Probab=21.46 E-value=59 Score=31.57 Aligned_cols=58 Identities=22% Similarity=0.452 Sum_probs=42.5
Q ss_pred hhcceeeEEEecCCCCCCCCchhhHHhhhhhhHhHhhHHHhhhhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCCcccC
Q 016407 44 DSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWS 123 (390)
Q Consensus 44 Egi~~lgWv~~~~~~~g~~~P~~~V~e~~dsA~Fy~NrVlkeyK~kd~~hv~Wv~~~~~l~l~~L~~YVk~~h~tGl~WN 123 (390)
||-..+-|-...+ .|.||==+.+-.+-=|+||+.-.|-+ ++.+|.|+-++-|.+|-
T Consensus 35 ~G~~~~kl~vt~g------gpLPfs~diL~~~f~YG~~~F~kYP~------------------~i~dyFk~sfpeGys~e 90 (219)
T PF01353_consen 35 EGTQTMKLKVTKG------GPLPFSFDILSPTFQYGNRCFTKYPD------------------GIPDYFKQSFPEGYSWE 90 (219)
T ss_dssp TTEEEEEEEEEES------SS-SS-GGGGGGGHHGGGTTSSBECT------------------TSG-HHHHTTTT-EEEE
T ss_pred CCEEEEEEEEEcC------CCCCCCHHHhcccccccceehhcCcC------------------CCccHHHHhCCCceEEE
Confidence 5556666744444 38888889999999999999988874 45589999999999998
Q ss_pred CC
Q 016407 124 AT 125 (390)
Q Consensus 124 ~~ 125 (390)
..
T Consensus 91 Rt 92 (219)
T PF01353_consen 91 RT 92 (219)
T ss_dssp EE
T ss_pred EE
Confidence 65
Done!