Query 016407
Match_columns 390
No_of_seqs 167 out of 342
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8f_A CAP, adenylyl cyclase-a 100.0 1E-67 3.6E-72 472.3 19.3 157 230-389 1-157 (157)
2 1k4z_A CAP, adenylyl cyclase-a 100.0 1.7E-67 5.8E-72 472.1 17.8 158 230-389 2-159 (159)
3 2b0r_A Possible adenyl cyclase 100.0 2.8E-67 9.6E-72 483.8 18.0 167 221-389 33-202 (202)
4 1s0p_A CAP, adenylyl cyclase-a 100.0 4E-51 1.4E-55 372.7 8.3 123 2-131 51-174 (176)
5 2yuh_A Tubulin-specific chaper 99.6 4.3E-16 1.5E-20 142.0 7.4 96 238-336 8-104 (179)
6 3bh7_B Protein XRP2; protein-p 98.5 3.8E-07 1.3E-11 91.0 10.7 97 238-337 39-136 (352)
7 2b0r_A Possible adenyl cyclase 98.5 1.7E-07 5.9E-12 86.7 7.4 77 258-334 89-167 (202)
8 1k4z_A CAP, adenylyl cyclase-a 98.5 3.8E-07 1.3E-11 81.9 8.2 59 273-331 24-83 (159)
9 1k8f_A CAP, adenylyl cyclase-a 98.4 3.8E-07 1.3E-11 81.6 7.9 56 276-331 26-82 (157)
10 2yuh_A Tubulin-specific chaper 97.1 0.00085 2.9E-08 60.8 6.7 53 281-333 32-84 (179)
11 3bh7_B Protein XRP2; protein-p 96.5 0.0069 2.4E-07 60.4 8.6 51 281-331 63-113 (352)
12 2pbd_V VAsp, vasodilator-stimu 84.6 0.73 2.5E-05 32.7 3.0 12 189-200 30-41 (43)
13 2vcp_D N-WAsp, neural wiskott- 73.4 3.6 0.00012 33.3 4.3 25 173-200 40-64 (93)
14 2a3z_C WAsp, wiskott-aldrich s 59.1 4.1 0.00014 26.3 1.5 22 176-200 2-23 (29)
15 2a41_C Wiskott-aldrich syndrom 58.7 3.9 0.00013 27.2 1.4 20 174-196 3-22 (32)
16 2a40_C Wiskott-aldrich syndrom 58.1 3.7 0.00013 27.4 1.2 23 175-200 4-26 (32)
17 3m3n_W N-WAsp, neural wiskott- 45.6 7.1 0.00024 32.4 1.2 22 174-198 4-25 (101)
18 2vcp_D N-WAsp, neural wiskott- 39.0 14 0.00047 29.8 2.0 24 175-201 14-37 (93)
19 3ir8_A Large stokes shift fluo 38.3 6.1 0.00021 37.0 -0.3 56 44-125 37-92 (221)
20 4akr_A F-actin-capping protein 32.1 29 0.00099 33.3 3.4 24 92-119 110-133 (281)
21 2lo0_A Uncharacterized protein 31.5 23 0.00078 27.9 2.0 43 66-111 31-74 (75)
22 3hqx_A UPF0345 protein aciad03 29.0 1.3E+02 0.0044 25.2 6.3 31 339-372 58-88 (111)
23 2f6m_B Vacuolar protein sortin 26.2 53 0.0018 27.4 3.5 48 65-118 46-98 (109)
24 2hpw_A Green fluorescent prote 24.8 17 0.00057 34.3 0.2 55 44-125 42-96 (233)
25 3eo6_A Protein of unknown func 24.7 2.9E+02 0.0098 22.9 7.7 77 279-372 8-85 (106)
26 1n1f_A Interleukin-19; cytokin 23.5 71 0.0024 28.1 4.0 45 72-117 61-105 (159)
27 2ilk_A Interleukin-10; cytokin 21.0 1.4E+02 0.0047 26.2 5.4 90 8-117 17-110 (160)
No 1
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1
Probab=100.00 E-value=1e-67 Score=472.29 Aligned_cols=157 Identities=46% Similarity=0.818 Sum_probs=154.5
Q ss_pred CCceeeecCCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecce
Q 016407 230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGV 309 (390)
Q Consensus 230 pp~~el~~g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~ 309 (390)
||++||+ |+||+||||+++++|++++++|+|+||||+|+|++|+|+||+|||+||+|+|++|+||++||++||+||++|
T Consensus 1 pp~~eL~-g~KW~VEn~~~~~~~~i~~~~~~qsV~I~~C~~s~I~IkGKvNsIsld~C~k~~vv~ds~VSsvevinc~~~ 79 (157)
T 1k8f_A 1 PAVLELE-GKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDV 79 (157)
T ss_dssp CCEEEEE-TTEEEEESCBSCCCEEECCCCTTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEE
T ss_pred CCceEEe-CCEEEEEeccCCcccEEEccccCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcE
Confidence 7999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccceEEEEeccceEEEEccCCCCcEEEEeecceeeeecCCCCCCCCceeccCCceeEEEeeCCeeEEeeecccC
Q 016407 310 EAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSG 389 (390)
Q Consensus 310 ~vQv~g~vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf~t~~~~~klvt~~veh~g 389 (390)
+|||+|.+|||+|||||||+||||++|+++||+|||||+|||+||+ |||||+|+||||||+|+|++|||+|+++||+|
T Consensus 80 ~vQv~g~vPtisIDktdg~~iYLSkesl~~ei~TsKsS~mNv~vp~--~d~D~~E~piPEQf~t~~~~gkl~t~~veh~g 157 (157)
T 1k8f_A 80 KVQVMGKVPTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVLIPT--EGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG 157 (157)
T ss_dssp EEEESSCCSEEEEESCEEEEEECCTTCTTCEEEEESCEEEEEEEEE--TTTEEEEEECCCEEEEEECSSSEEEEEECCCC
T ss_pred EEEEecccCEEEEEccCCEEEEEccccCCcEEEEEcccceEEeecC--CCCceeEccCchhEEEEEECCEEEEEEEEecC
Confidence 9999999999999999999999999999999999999999999994 47899999999999999999999999999998
No 2
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A
Probab=100.00 E-value=1.7e-67 Score=472.11 Aligned_cols=158 Identities=33% Similarity=0.642 Sum_probs=153.1
Q ss_pred CCceeeecCCeEEEEeecCCcceEEecCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecce
Q 016407 230 PPKLELQMGRKWVVENQIGRKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGV 309 (390)
Q Consensus 230 pp~~el~~g~kW~VEn~~~~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~ 309 (390)
||++||+ |+||+||||+++.++++++++|+|+||||+|+|++|+|+||+|||+||+|+|++|+||++||++||+||++|
T Consensus 2 pp~~eL~-g~KW~VEn~~~~~~~v~~~~~~~qsV~I~~C~~s~I~IkGKvNsItld~C~k~~vv~ds~VSsvevinc~~v 80 (159)
T 1k4z_A 2 PPRKELV-GNKWFIENYENETESLVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKF 80 (159)
T ss_dssp CCEEEEE-TTEEEEECCBSCSSCEEEECCTTCEEEEEEEEEEEEEEESCBSEEEEEEEEEEEEEESCBSSCEEEEEEESE
T ss_pred CccEEec-CCEEEEEEeeCCCceEEEccccCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcE
Confidence 8999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccceEEEEeccceEEEEccCCCCcEEEEeecceeeeecCCCCCCCCceeccCCceeEEEeeCCeeEEeeecccC
Q 016407 310 EAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQFVHTYKDGHFETTPVSHSG 389 (390)
Q Consensus 310 ~vQv~g~vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf~t~~~~~klvt~~veh~g 389 (390)
+|||+|.+|||+|||||||+||||+||+++||+|||||+|||+||.+ +||||+|+||||||+|+|+||||+|+++||+|
T Consensus 81 ~vQv~g~vPtisIDktdg~~iYLSkesl~~ei~TSksS~mNv~vp~~-~d~D~~E~piPEQf~t~~~~gkl~t~v~eh~g 159 (159)
T 1k4z_A 81 GIQVNHSLPQISIDKSDGGNIYLSKESLNTEIYTSCSTAINVNLPIG-EDDDYVEFPIPEQMKHSFADGKFKSAVFEHAG 159 (159)
T ss_dssp EEEESSCCSEEEEESCEEEEEECCSTTTTCEEEEESCEEEEEEESCS-GGGCCEEEECCCCEEEEEETTEEEEEECCC--
T ss_pred EEEEecccCEEEEEccCCEEEEEChhhcCcEEEEEcccceeEEecCC-CCCceeEccCchhEEEEEECCEEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999974 47899999999999999999999999999998
No 3
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}
Probab=100.00 E-value=2.8e-67 Score=483.85 Aligned_cols=167 Identities=31% Similarity=0.563 Sum_probs=156.2
Q ss_pred CCCCCCCCCCCceeeecCCeEEEEeecC-CcceEEecCCCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeee
Q 016407 221 SSPSFSKAGPPKLELQMGRKWVVENQIG-RKNLVIDDCDAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVA 299 (390)
Q Consensus 221 ~~~~~~~kkpp~~el~~g~kW~VEn~~~-~~~~vi~~~~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vs 299 (390)
+++.++++|||++||+ |+||+||||+| +.+|++++++|+|+||||+|+|++|+|+||+|+|+||+|+|++|+||++||
T Consensus 33 ~~~~~~~kkpP~~eL~-G~KW~VEn~~~~~~~lvi~~~e~~qsV~I~~C~nstI~IkGKvNsItld~C~k~~vv~dsvVS 111 (202)
T 2b0r_A 33 AARQVVTNGSPKVELQ-KDTYLVENHVNCADPITLSEGSIKNKVSVRCSQNSRIIVEQKVNSIFIENCVGCIFLVNGVIS 111 (202)
T ss_dssp --CCCCCCSSCEEEEE-TTEEEEECCBSCSSCEEECCCCTTCEEEEEEEESCEEEECSCBSEEEEEEEEEEEEEECCBSS
T ss_pred ccccccCCCCCeEEEe-CCEEEEEeccCCCCCceEeccccCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEE
Confidence 3445578899999998 99999999999 899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecceEEEEecccceEEEEeccceEEEEccCCCCcEEEEeecceeeeecCCCCCCCCceeccCCcee--EEEeeC
Q 016407 300 AFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAGPDSDWAEHALPQQF--VHTYKD 377 (390)
Q Consensus 300 svevinc~~~~vQv~g~vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf--~t~~~~ 377 (390)
+||||||++|+|||+|.||||+|||||||+||||+||++|||+|||||+|||+||++ |||||+|+|||||| +|+|++
T Consensus 112 svEvinc~~v~vQV~G~vPTIsIDKtDg~qiYLSkeSl~teIvTSKSSemNV~vP~~-~dgD~~E~pIPEQf~~kt~~~~ 190 (202)
T 2b0r_A 112 SIEIVNCDDIKLQMTGIVPTISLDKSNKVNIYTSKEGKNVEVYSSKSSEMNLLFPGE-EEGDWKELAIPEQFVTKYNESK 190 (202)
T ss_dssp EEEEESCEEEEEEESSCCCEEEEESCEEEEEECCGGGTTCEEEEESCEEEEEEEECS-STTCEEEEECCCCEEEEEEGGG
T ss_pred EEEEEecCcEEEEEecccCEEEEEccCCEEEEEcccccCcEEEEecccceeEeccCC-CCCceeEccCchHheEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999963 47899999999999 999999
Q ss_pred CeeEEeeecccC
Q 016407 378 GHFETTPVSHSG 389 (390)
Q Consensus 378 ~klvt~~veh~g 389 (390)
|||+|+++||+|
T Consensus 191 gkLvT~vveh~g 202 (202)
T 2b0r_A 191 GKLESMVSPLYG 202 (202)
T ss_dssp TEEEEEEC----
T ss_pred CEEEEEEhhhCC
Confidence 999999999998
No 4
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=100.00 E-value=4e-51 Score=372.66 Aligned_cols=123 Identities=31% Similarity=0.600 Sum_probs=117.9
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHhhcCC-CcccchhhHHHhhcceeeEEEecCCCCCCCCchhhHHhhhhhhHhHhh
Q 016407 2 LQKPDLVGLAEFLKPLNEVIMKANAMTEGRR-SDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSN 80 (390)
Q Consensus 2 ~kkP~~~~~~~lL~Pl~~~i~~v~~~ke~~r-s~~fnHLsavaEgi~~lgWv~~~~~~~g~~~P~~~V~e~~dsA~Fy~N 80 (390)
||||++.+|++||+||+++|++|++|||+|| |+||||||||+|||++||||++++ +|++||+||+||||||+|
T Consensus 51 ~kKP~~~~~~~lL~pl~~~i~~i~~~re~nR~s~~fNHLsavsEgi~aLgWV~v~~------~P~~~V~e~~dsA~Fy~N 124 (176)
T 1s0p_A 51 SKKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVVVEP------TPGPHVAEMRGSAEFYTN 124 (176)
T ss_dssp EECCCHHHHHHHTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHTSGGGGGGGGCCS------CHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHhhhhceeeccCC------CchhHHHHHHHHHHHHHH
Confidence 7899988899999999999999999999999 999999999999999999998876 799999999999999999
Q ss_pred HHHhhhhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCcccc
Q 016407 81 KILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWSATGKTVTS 131 (390)
Q Consensus 81 rVlkeyK~kd~~hv~Wv~~~~~l~l~~L~~YVk~~h~tGl~WN~~G~~~~~ 131 (390)
|||||||++|+.|||||++|++|| ++|++|||+||+|||+||++|.++++
T Consensus 125 rVLke~K~kd~~hveWvka~~~i~-~~L~~YVK~~httGl~WN~~G~~~~~ 174 (176)
T 1s0p_A 125 RILKEFKGVNQDQVDWVSNYVNFL-KDLEKYIKQYHTTGLTWNPKGGDAKS 174 (176)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH-HHHHHHHHHHSTTSCCCCTTSEESSC
T ss_pred HHHHHHhhcChhHHHHHHHHHHHH-HHHHHHHHHhCCCCCccCCCCCCCCC
Confidence 999999999999999999999975 99999999999999999999988653
No 5
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4.3e-16 Score=142.00 Aligned_cols=96 Identities=11% Similarity=0.201 Sum_probs=89.8
Q ss_pred CCeEEEEeecCCcceEEecCC-CcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecceEEEEecc
Q 016407 238 GRKWVVENQIGRKNLVIDDCD-AKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGS 316 (390)
Q Consensus 238 g~kW~VEn~~~~~~~vi~~~~-~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~ 316 (390)
-++|.|||++++ .|++...+ .+|.|+|++|++|+|.|.|++++|+|++|+++.|++..+.++|+|.+|+++.|++.
T Consensus 8 ~~~~~i~~~~~~-~iv~~~~~~~~~~v~I~~c~~c~I~i~g~~~sl~i~~c~~c~Iv~g~V~gsv~i~~C~~~~i~v~-- 84 (179)
T 2yuh_A 8 SWVCGFSNLESQ-VLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVA-- 84 (179)
T ss_dssp CCEEECCSCBSC-EEEECHHHHSSCEEEECSCBSCEEEECSCCSCEEEESCBSCEEECCCCSSCEEEESCBSCEEECC--
T ss_pred CCeEEEEeeECC-EEEECCccccCCeEEEecCcCCEEEEcCCccEEEEecCCCCEEEECCcccEEEEEeCCceEEEEE--
Confidence 589999999996 78887665 78999999999999999999999999999999999999999999999999999995
Q ss_pred cceEEEEeccceEEEEccCC
Q 016407 317 APTISVDNTGGCQLYLSQDS 336 (390)
Q Consensus 317 vPtI~IdKsd~~~vyLs~~s 336 (390)
+++|.|++|++|+|||+..+
T Consensus 85 c~Qlri~~~~~~~~yL~~~s 104 (179)
T 2yuh_A 85 CQQLRIHSTKDTRIFLQVTS 104 (179)
T ss_dssp CSEEEEESCBSCEEECCCSS
T ss_pred cCEEEEeccCCeEEEEeCCC
Confidence 88999999999999998755
No 6
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=98.51 E-value=3.8e-07 Score=91.02 Aligned_cols=97 Identities=14% Similarity=0.238 Sum_probs=85.4
Q ss_pred CCeEEEEeecCCcceEEecCC-CcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecceEEEEecc
Q 016407 238 GRKWVVENQIGRKNLVIDDCD-AKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGS 316 (390)
Q Consensus 238 g~kW~VEn~~~~~~~vi~~~~-~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~ 316 (390)
-+.|.+.|..|. .|+....+ ..+.+.|.+|++|+|.|-+.+.+|+|++|++|.|++-.+-++|.|.+|+++.|.+.
T Consensus 39 ~~~~~i~~~~~~-ti~~~~~~i~g~~v~I~nc~~c~I~l~~~~~sl~I~~c~nC~Iv~GpV~gsv~I~~C~n~~i~va-- 115 (352)
T 3bh7_B 39 PKDYMFSGLKDE-TVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLA-- 115 (352)
T ss_dssp CCSSEEESCBSC-EEEECTTSSTTCCEEEESCBSCEEEECSCBSCEEEESCBSCEEEEEEEEEEEEEESCEEEEEEEE--
T ss_pred CCceEEECccCC-EEEECCCcccCCcEEEecCcCCEEEEecCCceEEEecCCCCEEEEccccceEEEEcCCCcEEEEE--
Confidence 568999999985 45554333 56899999999999999999999999999999999999999999999999999985
Q ss_pred cceEEEEeccceEEEEccCCC
Q 016407 317 APTISVDNTGGCQLYLSQDSL 337 (390)
Q Consensus 317 vPtI~IdKsd~~~vyLs~~sl 337 (390)
+-.+-|..|.++.+||.-.+.
T Consensus 116 c~QlRih~c~n~~~yL~~~s~ 136 (352)
T 3bh7_B 116 CQQFRVRDCRKLEVFLCCATQ 136 (352)
T ss_dssp EEEEEEESCEEEEEEEEESSC
T ss_pred cceEEEecccCcEEEEEcCCC
Confidence 459999999999999987653
No 7
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}
Probab=98.50 E-value=1.7e-07 Score=86.66 Aligned_cols=77 Identities=13% Similarity=0.331 Sum_probs=64.1
Q ss_pred CCcceEEEEcccCceEEEeeEeceEEeecccceEEEEeeeeeeEEEEeecceEEEEec--ccceEEEEeccceEEEEcc
Q 016407 258 DAKQSVYVFGCKDSVLQIQGKVNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQG--SAPTISVDNTGGCQLYLSQ 334 (390)
Q Consensus 258 ~~~qsV~I~~C~~~~I~IkgKvnsIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g--~vPtI~IdKsd~~~vyLs~ 334 (390)
.+-++|.|.+|+++.|+++.-|.++.|.||+++.|++.+.+.+|.|++|++++|.+.- .=-.|...||++.+|.++.
T Consensus 89 GKvNsItld~C~k~~vv~dsvVSsvEvinc~~v~vQV~G~vPTIsIDKtDg~qiYLSkeSl~teIvTSKSSemNV~vP~ 167 (202)
T 2b0r_A 89 QKVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTGIVPTISLDKSNKVNIYTSKEGKNVEVYSSKSSEMNLLFPG 167 (202)
T ss_dssp SCBSEEEEEEEEEEEEEECCBSSEEEEESCEEEEEEESSCCCEEEEESCEEEEEECCGGGTTCEEEEESCEEEEEEEEC
T ss_pred CcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEcccccCcEEEEecccceeEeccC
Confidence 5788888888888888888888888888888888888888888888888888887653 2467888888888888875
No 8
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A
Probab=98.46 E-value=3.8e-07 Score=81.85 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=36.0
Q ss_pred EEEeeEec-eEEeecccceEEEEeeeeeeEEEEeecceEEEEecccceEEEEeccceEEE
Q 016407 273 LQIQGKVN-NITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLY 331 (390)
Q Consensus 273 I~IkgKvn-sIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~vPtI~IdKsd~~~vy 331 (390)
+.++...+ +|.|.+|.++.|++.+++.+|.++||.++.|.+...|.++.|-+|.+++|+
T Consensus 24 v~~~~~~~qsV~I~~C~~s~I~IkGKvNsItld~C~k~~vv~ds~VSsvevinc~~v~vQ 83 (159)
T 1k4z_A 24 LVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQ 83 (159)
T ss_dssp EEEECCTTCEEEEEEEEEEEEEEESCBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEE
T ss_pred EEEccccCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEE
Confidence 33444444 666666666666666666666666666666666666666666666666666
No 9
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1
Probab=98.44 E-value=3.8e-07 Score=81.62 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=35.1
Q ss_pred eeEec-eEEeecccceEEEEeeeeeeEEEEeecceEEEEecccceEEEEeccceEEE
Q 016407 276 QGKVN-NITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLY 331 (390)
Q Consensus 276 kgKvn-sIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~vPtI~IdKsd~~~vy 331 (390)
+...+ +|.|.+|.++.|++.+++.+|.++||.++.|.+...|.++.|-+|.+++|+
T Consensus 26 ~~~~~qsV~I~~C~~s~I~IkGKvNsIsld~C~k~~vv~ds~VSsvevinc~~~~vQ 82 (157)
T 1k8f_A 26 DTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQ 82 (157)
T ss_dssp CCCTTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEEEEE
T ss_pred ccccCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEE
Confidence 33444 666666666666666666666666666666666666666666666666666
No 10
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.00085 Score=60.78 Aligned_cols=53 Identities=8% Similarity=0.274 Sum_probs=32.3
Q ss_pred eEEeecccceEEEEeeeeeeEEEEeecceEEEEecccceEEEEeccceEEEEc
Q 016407 281 NITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLYLS 333 (390)
Q Consensus 281 sIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~vPtI~IdKsd~~~vyLs 333 (390)
.+.|.+|+++.|.+.+.++++.|.+|+++.|.+--..-.|.|..|..++|++.
T Consensus 32 ~v~I~~c~~c~I~i~g~~~sl~i~~c~~c~Iv~g~V~gsv~i~~C~~~~i~v~ 84 (179)
T 2yuh_A 32 DVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVA 84 (179)
T ss_dssp EEEECSCBSCEEEECSCCSCEEEESCBSCEEECCCCSSCEEEESCBSCEEECC
T ss_pred eEEEecCcCCEEEEcCCccEEEEecCCCCEEEECCcccEEEEEeCCceEEEEE
Confidence 56666666666666666666666666666655554555566666666666643
No 11
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=96.48 E-value=0.0069 Score=60.39 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=23.0
Q ss_pred eEEeecccceEEEEeeeeeeEEEEeecceEEEEecccceEEEEeccceEEE
Q 016407 281 NITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGSAPTISVDNTGGCQLY 331 (390)
Q Consensus 281 sIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~vPtI~IdKsd~~~vy 331 (390)
.+.|.||++|.|.|-+.++++.|.+|.++.|.+--.--.|.|+.|..|.|+
T Consensus 63 ~v~I~nc~~c~I~l~~~~~sl~I~~c~nC~Iv~GpV~gsv~I~~C~n~~i~ 113 (352)
T 3bh7_B 63 QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCT 113 (352)
T ss_dssp CEEEESCBSCEEEECSCBSCEEEESCBSCEEEEEEEEEEEEEESCEEEEEE
T ss_pred cEEEecCcCCEEEEecCCceEEEecCCCCEEEEccccceEEEEcCCCcEEE
Confidence 444444444444444444444444444444433222223444444444444
No 12
>2pbd_V VAsp, vasodilator-stimulated phosphoprotein; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens}
Probab=84.59 E-value=0.73 Score=32.70 Aligned_cols=12 Identities=42% Similarity=0.446 Sum_probs=6.4
Q ss_pred ccCccccCCccc
Q 016407 189 TAGLRKVTGDMK 200 (390)
Q Consensus 189 T~gLkkV~~~~~ 200 (390)
.+-||||.+.+.
T Consensus 30 gAKLRkV~r~ed 41 (43)
T 2pbd_V 30 GAKLRKVSKQEE 41 (43)
T ss_dssp TCCCBCCC----
T ss_pred hhhhccccCccc
Confidence 357999987653
No 13
>2vcp_D N-WAsp, neural wiskott-aldrich syndrome protein; actin-binding, transcription, muscle protein, nucleotide-binding, transcription regulation; HET: HIC ATP; 3.2A {Homo sapiens}
Probab=73.43 E-value=3.6 Score=33.26 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.1
Q ss_pred ccchhhhhhhhccCCcccCccccCCccc
Q 016407 173 KEGMAAVFQEISSKPVTAGLRKVTGDMK 200 (390)
Q Consensus 173 ~~~~~avFa~lN~G~iT~gLkkV~~~~~ 200 (390)
..++++|+++|.+|. +||||++.+.
T Consensus 40 ~~~R~dLL~~IR~G~---~LKkv~~~~~ 64 (93)
T 2vcp_D 40 CSGRDALLDQIRQGI---QLKSVADGQE 64 (93)
T ss_pred CCcHHHHHHHHHccc---ccCCCccccc
Confidence 446999999999994 7999986654
No 14
>2a3z_C WAsp, wiskott-aldrich syndrome protein; WH2, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 2.08A {Bos taurus}
Probab=59.08 E-value=4.1 Score=26.26 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.4
Q ss_pred hhhhhhhhccCCcccCccccCCccc
Q 016407 176 MAAVFQEISSKPVTAGLRKVTGDMK 200 (390)
Q Consensus 176 ~~avFa~lN~G~iT~gLkkV~~~~~ 200 (390)
+++|+++|.+| ..||+|+....
T Consensus 2 R~~Ll~~Ir~G---~~Lk~v~~~~~ 23 (29)
T 2a3z_C 2 RGALLDQIRQG---IQLNKTPGAPE 23 (29)
T ss_pred hHhHHHHHhcC---CCCCCCccccc
Confidence 68999999999 58999976643
No 15
>2a41_C Wiskott-aldrich syndrome protein interacting PROT; WIP, WH2, WAsp, DNAse I, ARP2/3, structural protein; HET: HIC NAG BMA ATP; 2.60A {Bos taurus}
Probab=58.66 E-value=3.9 Score=27.22 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.3
Q ss_pred cchhhhhhhhccCCcccCccccC
Q 016407 174 EGMAAVFQEISSKPVTAGLRKVT 196 (390)
Q Consensus 174 ~~~~avFa~lN~G~iT~gLkkV~ 196 (390)
.+++||+++|.+| .+|||+.
T Consensus 3 ~~r~aLL~~I~~G---~~Lkk~~ 22 (32)
T 2a41_C 3 AGRNALLSDISKG---KKLKKTV 22 (32)
T ss_dssp TTHHHHHHHHHHC---CCCBCCC
T ss_pred cchHHHHHHHHcC---CcCCcee
Confidence 3589999999999 7899874
No 16
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=58.10 E-value=3.7 Score=27.36 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.9
Q ss_pred chhhhhhhhccCCcccCccccCCccc
Q 016407 175 GMAAVFQEISSKPVTAGLRKVTGDMK 200 (390)
Q Consensus 175 ~~~avFa~lN~G~iT~gLkkV~~~~~ 200 (390)
++++||++|.+|. +||||++.+.
T Consensus 4 ~RsdLL~~Ir~G~---~Lk~Ve~~~~ 26 (32)
T 2a40_C 4 ARSDLLSAIRQGF---QLRRVEEQRE 26 (32)
T ss_dssp HHHHHHHHHHHCC---CCBCCCC---
T ss_pred cHHHHHHHHHccC---CcCCcccccc
Confidence 5899999999993 9999986543
No 17
>3m3n_W N-WAsp, neural wiskott-aldrich syndrome protein; actin dimer, ATP-binding, actin cytoskeleton, methylation, M protein, actin-binding, motor protein; HET: HIC ATP; 7.00A {Mus musculus}
Probab=45.56 E-value=7.1 Score=32.38 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=15.2
Q ss_pred cchhhhhhhhccCCcccCccccCCc
Q 016407 174 EGMAAVFQEISSKPVTAGLRKVTGD 198 (390)
Q Consensus 174 ~~~~avFa~lN~G~iT~gLkkV~~~ 198 (390)
++|++|+++|.+|.. ||||+..
T Consensus 4 ~~r~~Ll~~Ir~G~~---Lrkv~~~ 25 (101)
T 3m3n_W 4 GNKAALLDQIREGAQ---LKKVEQN 25 (101)
T ss_dssp TTHHHHHHHHHHCCC---CBCC---
T ss_pred CchhhhHHHHhcCcc---ccccCcc
Confidence 458899999988843 8888655
No 18
>2vcp_D N-WAsp, neural wiskott-aldrich syndrome protein; actin-binding, transcription, muscle protein, nucleotide-binding, transcription regulation; HET: HIC ATP; 3.2A {Homo sapiens}
Probab=39.00 E-value=14 Score=29.78 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=19.5
Q ss_pred chhhhhhhhccCCcccCccccCCcccc
Q 016407 175 GMAAVFQEISSKPVTAGLRKVTGDMKT 201 (390)
Q Consensus 175 ~~~avFa~lN~G~iT~gLkkV~~~~~T 201 (390)
++++||.+|++| ..||||+.+..+
T Consensus 14 ~r~aLl~~Ir~G---~~Lkkv~~~~~p 37 (93)
T 2vcp_D 14 NKAALLDQIREG---AQLKKVEQNSRP 37 (93)
T ss_pred cchhhHHHHhcc---cccCcCCcccCC
Confidence 578999999999 689999855443
No 19
>3ir8_A Large stokes shift fluorescent protein; beta barrel; HET: CRQ; 1.63A {Montipora SP} SCOP: d.22.1.1 PDB: 2wht_A* 2whs_A* 2whu_A* 3vk1_A* 2p4m_A* 2arl_A* 3vic_A* 1mov_A* 1mou_A*
Probab=38.28 E-value=6.1 Score=36.98 Aligned_cols=56 Identities=16% Similarity=0.360 Sum_probs=44.0
Q ss_pred hhcceeeEEEecCCCCCCCCchhhHHhhhhhhHhHhhHHHhhhhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCCcccC
Q 016407 44 DSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWS 123 (390)
Q Consensus 44 Egi~~lgWv~~~~~~~g~~~P~~~V~e~~dsA~Fy~NrVlkeyK~kd~~hv~Wv~~~~~l~l~~L~~YVk~~h~tGl~WN 123 (390)
||-..+-|.+..+ .|.||--+.+-.+ |+||+.-.|-+ ++.+|.|+-++.|.+|.
T Consensus 37 eG~~~~kl~vt~G------~PLPFs~dILs~~--YG~r~F~kYP~------------------~i~dyFk~sfpeGys~e 90 (221)
T 3ir8_A 37 EGEQTVKLTVTKG------GPLPFAWDILSPQ--LXSIPFTKYPE------------------DIPDYFKQSFPEGYTWE 90 (221)
T ss_dssp TTEEEEEEEEEES------CSCSSCGGGTGGG--C-CTTSSBCCT------------------TSCCHHHHTTTTCEEEE
T ss_pred CCEEEEEEEEccC------CcCCCChHHhccc--ccceecccCCC------------------ccchhHHhhCCCceeEE
Confidence 5666677777776 4888888888888 99999988763 44588999999999998
Q ss_pred CC
Q 016407 124 AT 125 (390)
Q Consensus 124 ~~ 125 (390)
..
T Consensus 91 Rt 92 (221)
T 3ir8_A 91 RS 92 (221)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 20
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=32.14 E-value=29 Score=33.35 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCCC
Q 016407 92 NHVEWARALKELYLPGLRDYVKSHYPLG 119 (390)
Q Consensus 92 ~hv~Wv~~~~~l~l~~L~~YVk~~h~tG 119 (390)
..-.|..++. ++|.+||++||++|
T Consensus 110 ~~e~~R~al~----~~l~~Yv~~hYp~g 133 (281)
T 4akr_A 110 DIEQYRAAFD----EEATKYCNEYYPNG 133 (281)
T ss_dssp GGHHHHHHHH----HHHHHHHHHHCTTC
T ss_pred chHHHHHHHH----HHHHHHHHhhCCCC
Confidence 3445666644 89999999999964
No 21
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=31.48 E-value=23 Score=27.88 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=32.4
Q ss_pred hhHHhhhhhhHhHhh-HHHhhhhccCCCchHHHHHHHHHHHHHHHHH
Q 016407 66 AHVEESWQMAEFYSN-KILVEYRSKDPNHVEWARALKELYLPGLRDY 111 (390)
Q Consensus 66 ~~V~e~~dsA~Fy~N-rVlkeyK~kd~~hv~Wv~~~~~l~l~~L~~Y 111 (390)
+.-.+.+++..||.. +-+.+-|-+|+ +++..+..||-.++++|
T Consensus 31 ~sg~~vl~TeeFW~DL~gFL~qRlkDe---~~A~~l~siFk~AW~ss 74 (75)
T 2lo0_A 31 PSGESVVATEAFWDDLQGFLEQRLKDY---DEANKLRVLFKEAWRSS 74 (75)
T ss_dssp CCSSTTTTSHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHTT
T ss_pred chHHHHHhHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHhhc
Confidence 467899999999999 88888898877 45556666565555554
No 22
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=29.03 E-value=1.3e+02 Score=25.24 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=27.5
Q ss_pred cEEEEeecceeeeecCCCCCCCCceeccCCceeE
Q 016407 339 ASITTAKSSEINVLVPGAGPDSDWAEHALPQQFV 372 (390)
Q Consensus 339 ~eI~tskss~~Nv~vP~~~e~~d~~E~piPEQf~ 372 (390)
.|+.+--|.++.|.+|+ ++||..+.=.|+|.
T Consensus 58 ~E~MevvsG~l~V~Lpg---~~eW~~~~aGesF~ 88 (111)
T 3hqx_A 58 PERMEIISGECRVKIAD---STESELFRAGQSFY 88 (111)
T ss_dssp CEEEEEEESEEEEEETT---CSSCEEEETTCEEE
T ss_pred cEEEEEEEeEEEEEcCC---cccCEEeCCCCEEE
Confidence 68888889999999995 47999999999997
No 23
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=26.24 E-value=53 Score=27.41 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=33.2
Q ss_pred hhhHHhhhhhhHhHh---hHHHhhhhc--cCCCchHHHHHHHHHHHHHHHHHHHHhCCC
Q 016407 65 IAHVEESWQMAEFYS---NKILVEYRS--KDPNHVEWARALKELYLPGLRDYVKSHYPL 118 (390)
Q Consensus 65 ~~~V~e~~dsA~Fy~---NrVlkeyK~--kd~~hv~Wv~~~~~l~l~~L~~YVk~~h~t 118 (390)
..||++.+...+ |+ +|+|.+||. +|.++ + .+...| .+|..|.++|+..
T Consensus 46 kAyikD~It~~e-Yt~~c~rLL~QyKt~~~~~~~-~---~v~~~~-~~le~F~~~y~l~ 98 (109)
T 2f6m_B 46 KAYLKDSIDDTQ-YTNTVDKLLKQFKVYLNSQNK-E---EINKHF-QSIEAFADTYNIT 98 (109)
T ss_dssp HHHHTTCSCHHH-HHHHHHHHHHHHHHHHTCTTT-T---HHHHHH-HHHHHHHHHTTCC
T ss_pred HHHhhcCCCHHH-HHHHHHHHHHHHHHHHhcccH-H---HHHHHC-CCHHHHHHHhCCC
Confidence 568999998888 65 789999995 33222 1 122223 7889999998853
No 24
>2hpw_A Green fluorescent protein; GFP, structural genomics, PSI, protein initiative; HET: CSY; 1.55A {Clytia gregaria}
Probab=24.79 E-value=17 Score=34.27 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=40.5
Q ss_pred hhcceeeEEEecCCCCCCCCchhhHHhhhhhhHhHhhHHHhhhhccCCCchHHHHHHHHHHHHHHHHHHHHhCCCCcccC
Q 016407 44 DSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYPLGPVWS 123 (390)
Q Consensus 44 Egi~~lgWv~~~~~~~g~~~P~~~V~e~~dsA~Fy~NrVlkeyK~kd~~hv~Wv~~~~~l~l~~L~~YVk~~h~tGl~WN 123 (390)
||-+.+-|+.+.. |.|.|..| =+..| +||+.-.|- +++.+|.|+-++.|.+|.
T Consensus 42 eG~q~~~~l~vt~---ggPLPFs~-----Ls~~f-G~r~F~kYP------------------~~i~DyFK~sfpeGyswe 94 (233)
T 2hpw_A 42 TGTIKAKYICTTG---DLPVPWAT-----ILSSL-XVFCFAKYP------------------RHIADFFKSTQPDGYSQD 94 (233)
T ss_dssp TTEEEEEEEETTS---SCSSCHHH-----HTTTC--CGGGSBCC------------------TTSCCHHHHTTTTCEEEE
T ss_pred cCEEEEEEEEEec---CccCCchh-----hhhhh-hhhccccCC------------------cccchHHHhcCCCceeEE
Confidence 5667778888865 45667666 35667 999998775 234488899999999998
Q ss_pred CC
Q 016407 124 AT 125 (390)
Q Consensus 124 ~~ 125 (390)
..
T Consensus 95 Rt 96 (233)
T 2hpw_A 95 RI 96 (233)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 25
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=24.66 E-value=2.9e+02 Score=22.88 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=49.2
Q ss_pred eceEEeecccceEEEEeeeeeeEEEEeecceEEEEecc-cceEEEEeccceEEEEccCCCCcEEEEeecceeeeecCCCC
Q 016407 279 VNNITIDKCTKMGVVFKDVVAAFEIVNCNGVEAQCQGS-APTISVDNTGGCQLYLSQDSLGASITTAKSSEINVLVPGAG 357 (390)
Q Consensus 279 vnsIsid~C~k~~vv~ds~Vssvevinc~~~~vQv~g~-vPtI~IdKsd~~~vyLs~~sl~~eI~tskss~~Nv~vP~~~ 357 (390)
+..|+|. ++.++-||+.|.+..|..-+.-. ...|. .|. ..-+.-+ ..|+.+--|.++.|.+|+
T Consensus 8 ~~~vtv~--kkaNvYFDGkV~S~~~~~~dG~~-kTlGVm~PG---------eY~F~T~--~~E~MevvsG~l~V~LpG-- 71 (106)
T 3eo6_A 8 VPATALG--KSSRISLDGRRSERSVILADGSM-HSLTLLHPG---------VYTLSSE--VAETIRVLSGMAYYHAEG-- 71 (106)
T ss_dssp EEEEEEE--SCCEEETTTTEEEEEEEETTSCE-EEEEEECSE---------EEEECCS--SCEEEEEEEEEEEEECTT--
T ss_pred ecceEEE--EEeeEEeCCeEEEEEEEeCCCCe-EEEEEEeee---------EEEecCC--CcEEEEEEEeEEEEECCC--
Confidence 3445554 56777888888887777544322 11121 111 1112222 368888888999999995
Q ss_pred CCCCceeccCCceeE
Q 016407 358 PDSDWAEHALPQQFV 372 (390)
Q Consensus 358 e~~d~~E~piPEQf~ 372 (390)
++||..+.=.|+|.
T Consensus 72 -~~eW~~~~aGesF~ 85 (106)
T 3eo6_A 72 -ANDVQELHAGDSMV 85 (106)
T ss_dssp -CSSCEEEETTCEEE
T ss_pred -CccCEEECCCCEEE
Confidence 47999999999997
No 26
>1n1f_A Interleukin-19; cytokine, four helix bundle, immune system; HET: NAG; 1.95A {Homo sapiens} SCOP: a.26.1.3
Probab=23.46 E-value=71 Score=28.11 Aligned_cols=45 Identities=7% Similarity=0.252 Sum_probs=33.5
Q ss_pred hhhhHhHhhHHHhhhhccCCCchHHHHHHHHHHHHHHHHHHHHhCC
Q 016407 72 WQMAEFYSNKILVEYRSKDPNHVEWARALKELYLPGLRDYVKSHYP 117 (390)
Q Consensus 72 ~dsA~Fy~NrVlkeyK~kd~~hv~Wv~~~~~l~l~~L~~YVk~~h~ 117 (390)
.+--+||-++|++.|...++...+=+.++.+.| ..|+.-++..|.
T Consensus 61 ~~lL~FYLe~Vf~~~~~~~~~~~~~vssLan~f-~~L~~~L~~C~~ 105 (159)
T 1n1f_A 61 KNLLAFYVDRVFKDHQEPNPKILRKISSIANSF-LYMQKTLRQCQE 105 (159)
T ss_dssp HHHHHHHHHTHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhccCCccccchHHHHHHHH-HHHHHHHHhchh
Confidence 344589999999999998887777777776643 667777776653
No 27
>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} SCOP: a.26.1.3 PDB: 1j7v_L 1y6k_L 2h24_A 1inr_A 1ilk_A 1lk3_A 1y6n_L 1vlk_A 1y6m_L
Probab=21.02 E-value=1.4e+02 Score=26.23 Aligned_cols=90 Identities=18% Similarity=0.303 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHHHHH---HhhcCC-CcccchhhHHHhhcceeeEEEecCCCCCCCCchhhHHhhhhhhHhHhhHHH
Q 016407 8 VGLAEFLKPLNEVIMKANA---MTEGRR-SDFFNHLKSAADSLTALAWIAYTGKDCGMSMPIAHVEESWQMAEFYSNKIL 83 (390)
Q Consensus 8 ~~~~~lL~Pl~~~i~~v~~---~ke~~r-s~~fnHLsavaEgi~~lgWv~~~~~~~g~~~P~~~V~e~~dsA~Fy~NrVl 83 (390)
..+.-.|+-|-++..+|.+ -+|. . ..+.+. .+-+.+.. .. =.-.++++ -+||-++|+
T Consensus 17 ~~~~~~L~elr~~F~~Ik~~~QakD~-~dv~LL~~--~ll~~~k~-----~~--------~C~~l~~l---L~FYLe~Vf 77 (160)
T 2ilk_A 17 GNLPNMLRDLRDAFSRVKTFFQMKDQ-LDNLLLKE--SLLEDFKG-----YL--------GCQALSEM---IQFYLEEVM 77 (160)
T ss_dssp TTHHHHHHHHHHHHHTTHHHHHHHCC-CCSCSSCH--HHHHHHHS-----TT--------HHHHHHHH---HHHHHHHTH
T ss_pred cchhhHHHHHHHHHHHHHHHHhcccc-ccchhccH--HHHHhccC-----cc--------ccHHHHHH---HHHHHHHHh
Confidence 3567778888888777766 2333 3 344443 22222211 01 13334444 489999999
Q ss_pred hhhhccCCCchHHHHHHHHHHHHHHHHHHHHhCC
Q 016407 84 VEYRSKDPNHVEWARALKELYLPGLRDYVKSHYP 117 (390)
Q Consensus 84 keyK~kd~~hv~Wv~~~~~l~l~~L~~YVk~~h~ 117 (390)
+.|...++...+=+.++.+. |..|+.-++.-|.
T Consensus 78 ~~~~~~~p~i~~~vssL~~~-f~~L~~~L~~C~~ 110 (160)
T 2ilk_A 78 PQAENQDPDIKAHVNSLGEN-LKTLRLRLRRCHR 110 (160)
T ss_dssp HHHHTTCTTTHHHHHHHHHH-HHHHHHHHHHSTT
T ss_pred hhhcccCchhhhHHHHHHHH-HHHHHHHHHhChh
Confidence 99999988887777777774 3777777777553
Done!