BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016408
         (390 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
          Human Tid1 Protein
          Length = 79

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 1/48 (2%)

Query: 18 ARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 65
          A+K HPD N +DP A + F  L EAY+VLSD  +R+ YDAYG SG S+
Sbjct: 32 AKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG-SGPSS 78


>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
 pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
          Length = 210

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query: 18 ARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 63
          A K+HPDKNPN+P A  +F  +  AY+VL D   R+ YD YG+ G+
Sbjct: 27 ALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 72


>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
          Length = 780

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query: 18 ARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 63
          A K+HPDKNPN+P A  +F  +  AY+VL D   R+ YD YG+ G+
Sbjct: 46 ALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91


>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
          Length = 77

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 9  QITFACGFQARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 63
          +I  A   QA + HPDKN  +P A + F+ + EAY VLSDP +R+ +D YG+ G+
Sbjct: 19 EIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72


>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
          Length = 99

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 10 ITFACGFQARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 64
          I  A   +A + HPDKNP N   A + F+ + EAY+VLSD  +R+ YD YG+ G++
Sbjct: 19 IKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74


>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
          C Menber 5
          Length = 109

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 18 ARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 63
          A K HPDKNP++P AA  F+ +  A+ +L+D  +R  YD YG  G+
Sbjct: 42 ALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87


>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
           Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
           The Molecular Chaperone Dnaj, 20 Structures
          Length = 107

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 5   VEPLQITFACGFQARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 64
            E  +I  A    A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +   
Sbjct: 15  AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74

Query: 65  ----TEAIIDPAAIFAMLFGSELFEDYIG 89
                       A F+ +FG ++F D  G
Sbjct: 75  QGGMGGGGFGGGADFSDIFG-DVFGDIFG 102


>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
          N-Terminal Fragment (Residues 1-78) Of The Molecular
          Chaperone Dnaj, Nmr, 20 Structures
          Length = 77

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%)

Query: 5  VEPLQITFACGFQARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 63
           E  +I  A    A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +  
Sbjct: 15 AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF 73


>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
           N-Terminal Fragment (Residues 1-104) Of The Molecular
           Chaperone Dnaj, Nmr, 20 Structures
          Length = 103

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 5   VEPLQITFACGFQARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 64
            E  +I  A    A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +   
Sbjct: 15  AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74

Query: 65  ----TEAIIDPAAIFAMLFGSELFEDYIG 89
                       A F+ +FG ++F D  G
Sbjct: 75  QGGMGGGGFGGGADFSDIFG-DVFGDIFG 102


>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
          Protein Hcg3, A Hypothetical Protein Tmp_locus_21
          Length = 82

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 18 ARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 65
          A K HPDKNP N   A + F+ + EAY+VLSD  +R  YD YG SG S+
Sbjct: 34 ALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG-SGPSS 81


>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
          C Menber 12
          Length = 112

 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 2  LSEVEPLQITFACGFQARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 61
          LS VE +   F    +A + HPDK+P +P A + FQ L +A ++L++   R  YD + +S
Sbjct: 31 LSSVEQILAEFK--VRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88

Query: 62 GIS 64
           +S
Sbjct: 89 QMS 91


>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
          B Menber 12
          Length = 78

 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 18 ARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 65
          A K HPDKN + P A + F+ +G AY VLS+P +R+ YD +G SG S+
Sbjct: 32 ALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPEKRKQYDQFG-SGPSS 77


>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
          Subfamily B Member 8
          Length = 92

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 7  PLQITFACGFQARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 59
          P  I  A    A + HPDKNP N   A + F+++ EAY+VLSD  +R  YD  G
Sbjct: 23 PEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76


>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
          Length = 73

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 18 ARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 59
          A K HPDKNP+    A+ F+ + +AY+VLSD  +RQ YD  G
Sbjct: 33 ALKFHPDKNPD---GAEQFKQISQAYEVLSDEKKRQIYDQGG 71


>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
          Domain From Homo Sapiens
          Length = 71

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 18 ARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 59
          A K HPDKNPN+    + F+ + +AY+VLSD  +R+ YD  G
Sbjct: 31 ALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELYDKGG 69


>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
          B Menber 9
          Length = 88

 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 9  QITFACGFQARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 65
          QI  A    A K HPDKN   P A   F+ + EAY+ LSD  +R+ YD  G S  ++
Sbjct: 23 QIKKAFHKLAMKYHPDKN-KSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS 78


>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
          Protein, Mouse Hypothetical Mkiaa0962
          Length = 88

 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 18 ARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST 65
          AR+ HPDKN  DP A   F  + +AY++LS+  +R  YD YG SG S+
Sbjct: 42 AREWHPDKN-KDPGAEDRFIQISKAYEILSNEEKRTNYDHYG-SGPSS 87


>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
          Saccharomyces Cerevisiae
          Length = 92

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 18 ARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 59
          A K HPDK   D    + F+ + EA+++L+DP +R+ YD YG
Sbjct: 33 ALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYG 71


>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
          Escherichia Coli Cbpa
          Length = 73

 Score = 35.0 bits (79), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 18 ARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYD 56
          ARK HPD +  +P A   F+ + EA++VLSD  +R  YD
Sbjct: 30 ARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRAEYD 67


>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
          Precursor From C.Elegans
          Length = 109

 Score = 34.7 bits (78), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 18 ARKVHPDKNPNDP---LAAQNFQVLGEAYQVLSDPAQRQAYDAY 58
          ARK HPD+  N     LA + F+V+  AY+ L D   +  YD Y
Sbjct: 41 ARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYY 84


>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
          Williams- Beuren Syndrome Chromosome Region 18 Protein
          Length = 99

 Score = 32.3 bits (72), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%)

Query: 9  QITFACGFQARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYD 56
          QI  A   Q    HPD+N     AA+ F  + +AY VL     R+ YD
Sbjct: 33 QIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYD 80


>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
          Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
          Resolution.
 pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
          Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
          Resolution
          Length = 329

 Score = 32.3 bits (72), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 18 ARKVHPD-KNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYD 56
          ARK HPD    ND  A   F+ L EA++VL D  +R  YD
Sbjct: 53 ARKYHPDVSKEND--AEAKFKDLAEAWEVLKDEQRRAEYD 90


>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
          Length = 816

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 121 QKEREEKLADILRGRLNQYVQGNKEDFINYAEAEVSRLSNAAYGVDMLNTIGYIY 175
           +K+R  +++ ++  +    ++ N EDF++Y + +++R+      VD  N +  IY
Sbjct: 534 KKDRHYEMSSMVETQALNKLKDNPEDFVDYNKKQITRIYPKGTRVDSSNYVPQIY 588


>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
 pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
          Length = 813

 Score = 29.3 bits (64), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 121 QKEREEKLADILRGRLNQYVQGNKEDFINYAEAEVSRLSNAAYGVDMLNTIGYIY 175
           +K+R  +++ ++  +    ++ N EDF++Y + +++R+      VD  N +  IY
Sbjct: 534 KKDRHYEMSSMVETQALNKLKDNPEDFVDYNKKQLTRIYPKGTRVDSSNYVPQIY 588


>pdb|4F3V|A Chain A, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
           From Esx-1 Secretion System Of Mycobacterium
           Tuberculosis
 pdb|4F3V|B Chain B, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
           From Esx-1 Secretion System Of Mycobacterium
           Tuberculosis
          Length = 282

 Score = 28.5 bits (62), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 81  SELFEDYIGQLAMASVASLDIFTEGEEFD 109
           + LFE  +  L M+   SLD+FTE   +D
Sbjct: 8   ASLFESAVSMLPMSEARSLDLFTEITNYD 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,190,800
Number of Sequences: 62578
Number of extensions: 366677
Number of successful extensions: 680
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 26
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)