BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016409
(390 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Z6J2|GRASP_HUMAN General receptor for phosphoinositides 1-associated scaffold
protein OS=Homo sapiens GN=GRASP PE=1 SV=1
Length = 395
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 99 YRWQPLNCQLPRFNGLEFLVKMKGKTVMFVGDSLGLNQWE-------SLICMIHAAAPRT 151
+RW+ L+ + + L K +T F + GL+ E + +C +H ++P
Sbjct: 86 FRWKNLSQSPEQQRKVLTLEKEDNQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQ 145
Query: 152 RTHMTRGDPLSTFKFLDYGISVSFYRAPYLVDIDVVHGKRVLKLEDISGNG--KSWLNAD 209
+T GD +++ G++V R +VDI G VL+LE + G K+ L A
Sbjct: 146 LAGLTPGDTIASVN----GLNVEGIRHREIVDIIKASGN-VLRLETLYGTSIRKAELEAR 200
Query: 210 V 210
+
Sbjct: 201 L 201
>sp|Q9NPD5|SO1B3_HUMAN Solute carrier organic anion transporter family member 1B3 OS=Homo
sapiens GN=SLCO1B3 PE=1 SV=1
Length = 702
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 277 THYNPSEWSAGSTSSTAKNCYGETAPMSGTTYPGAYPDQMR----------VVDAVIRDM 326
TH NPSE S S S+ N +T +GT+ D ++ + ++R +
Sbjct: 127 THINPSENSTSSLSTCLIN---QTLSFNGTSPEIVEKDCVKESGSHMWIYVFMGNMLRGI 183
Query: 327 -HSPAYLLDITMLSELRKDGHPSIYSGDLNPKQKANP 362
+P L I+ + + K+GH S+Y G LN P
Sbjct: 184 GETPIVPLGISYIDDFAKEGHSSLYLGSLNAIGMIGP 220
>sp|A2BGA0|RFX4_DANRE Transcription factor RFX4 OS=Danio rerio GN=rfx4 PE=2 SV=1
Length = 735
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 203 KSWLNADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNI 262
+ W N D+ S ++ E S + D + YQ+ DRL+ + + + W+D+ +
Sbjct: 348 EDWRNVDLNSITKQTLYTMEDSRE--DQRRLIIQLYQEFDRLLEDQSPIEAYIEWLDSMV 405
Query: 263 DRSKTRV 269
+R RV
Sbjct: 406 ERCVVRV 412
>sp|O74304|WIN1_SCHPO MAP kinase kinase kinase win1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=win1 PE=1 SV=1
Length = 1436
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 20 LVKPHTVSSAVIMGLRNH-HNNHNHHRRPMLQANQSTCALFVGTWVRDDTYPMY--QSPE 76
L+ P T SS++ + ++N H+N +H RP LQ++ S+ + +++D Y M+ +S
Sbjct: 132 LLHPPTSSSSIPIPIKNAGHSNLDHPIRPSLQSSISSNRIIKSPGIKEDDY-MHRGRSIS 190
Query: 77 CPIIDSE 83
P+ID E
Sbjct: 191 SPMIDVE 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,612,171
Number of Sequences: 539616
Number of extensions: 6907636
Number of successful extensions: 15770
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15769
Number of HSP's gapped (non-prelim): 4
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)