BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016410
(390 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q680C0|GDL62_ARATH GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955
PE=2 SV=1
Length = 350
Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 173/359 (48%), Gaps = 37/359 (10%)
Query: 31 FHVSGPRNVASPNWRDLINSSWKDPNHKRTVIACFIQAVYLLEIDKQENRT-EESALAPK 89
F ++GP ++ S +W + +H+R+V +Q +Y+ E D+Q R E AL+P
Sbjct: 9 FSLTGPLHLTSIDW--------ANEHHRRSVAGSLVQGIYVAERDRQLQREGPELALSPI 60
Query: 90 WWIPFKYKLTQTLIDERDGSIYGAVLEWDRAAAMADLVLIRPSGAPKAILALRGTLLKSS 149
W F ++L + +D+ D SI+G + E+ ++ V +P+ ++A RGT+ K
Sbjct: 61 WSEFFHFRLIRKFVDDADNSIFGGIYEYKLPQQLSQTVK-SMEFSPRFVIAFRGTVTKVD 119
Query: 150 TIRRDIEDDLRFLAWESLKGSVRFKGALEALRSVAGSYGSSNVCIAGHSLGAGFALQVGK 209
+I RDIE D+ + L + RF+ A++A+R++ S G S+V +AGHSLGA AL GK
Sbjct: 120 SISRDIEHDIHVIR-NGLHTTTRFEIAIQAVRNIVASVGGSSVWLAGHSLGASMALLTGK 178
Query: 210 ALAKEGIYVDTHLFNPPSVSLAMSVRNIGEKAIFAWNRFKSMLPSSSVTQTSDEGQKITS 269
+A+ G + + FNPP L+ + I +K I + + S +T +K T
Sbjct: 179 TIARTGFFPECFAFNPP--FLSAPIEKIKDKRI----KHGIRIAGSVITAGLALAKKATQ 232
Query: 270 PAGFKNWVLHFYGDKTSSELKKWVPHLYVNNSDYICCYYTD-----------PAGTVENN 318
+ L D + L W P LYVN D++C Y G VE
Sbjct: 233 HYSQNDRALPAPPDPFEA-LSDWFPRLYVNPGDHLCSEYVGYFEHRNKMEEIGIGFVERV 291
Query: 319 ANKENSG--------PINGQVAAKLFVMSKGKQKFLEAHGLQQWWSDDLELQMSLQNSK 369
A + + G P++ ++ L V + F +AHG+ QWW +D + + + K
Sbjct: 292 ATQHSLGGMLLGGQEPVHLIPSSVLTVNLSSSRDFKQAHGIHQWWREDNKFETKVYQYK 350
>sp|Q64UA4|ATPA_BACFR ATP synthase subunit alpha OS=Bacteroides fragilis (strain YCH46)
GN=atpA PE=3 SV=1
Length = 527
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 126 LVLIRPSGA---PKAILALRGTLLKSSTIRRDIEDDLRFL--AWESLKGSVRFKGALEAL 180
L+L RPSG P I L LL+ + + E+ R + ESLKG V+ G+L AL
Sbjct: 283 LILRRPSGREAYPGDIFYLHSRLLERAAKIINQEEVAREMNDLPESLKGKVKGGGSLTAL 342
Query: 181 RSVAGSYGSSNVCIAGHSLGAGFALQVGKALAKEGIYVDTHLFNP---PSVSLAMSVRNI 237
+ G + I + + ++ I++DT LFN P++++ +SV +
Sbjct: 343 PIIETQAGDVSAYIPTNVI----------SITDGQIFLDTDLFNQGNRPAINVGISVSRV 392
Query: 238 GEKA 241
G A
Sbjct: 393 GGNA 396
>sp|Q5LD82|ATPA_BACFN ATP synthase subunit alpha OS=Bacteroides fragilis (strain ATCC
25285 / NCTC 9343) GN=atpA PE=3 SV=1
Length = 527
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 126 LVLIRPSGA---PKAILALRGTLLKSSTIRRDIEDDLRFL--AWESLKGSVRFKGALEAL 180
L+L RPSG P I L LL+ + + E+ R + ESLKG V+ G+L AL
Sbjct: 283 LILRRPSGREAYPGDIFYLHSRLLERAAKIINQEEVAREMNDLPESLKGKVKGGGSLTAL 342
Query: 181 RSVAGSYGSSNVCIAGHSLGAGFALQVGKALAKEGIYVDTHLFNP---PSVSLAMSVRNI 237
+ G + I + + ++ I++DT LFN P++++ +SV +
Sbjct: 343 PIIETQAGDVSAYIPTNVI----------SITDGQIFLDTDLFNQGNRPAINVGISVSRV 392
Query: 238 GEKA 241
G A
Sbjct: 393 GGNA 396
>sp|Q8A9U7|ATPA_BACTN ATP synthase subunit alpha OS=Bacteroides thetaiotaomicron (strain
ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
GN=atpA PE=3 SV=1
Length = 527
Score = 35.8 bits (81), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 28/129 (21%)
Query: 126 LVLIRPSGA---PKAILALRGTLL-------KSSTIRRDIEDDLRFLAWESLKGSVRFKG 175
L+L RPSG P I L LL K + R++ D ESLKG V+ G
Sbjct: 283 LILRRPSGREAYPGDIFYLHSRLLERAAKIIKEEEVAREMND-----LPESLKGIVKVGG 337
Query: 176 ALEALRSVAGSYGSSNVCIAGHSLGAGFALQVGKALAKEGIYVDTHLFNP---PSVSLAM 232
+L AL + G + I + + ++ I+++T LFN P++++ +
Sbjct: 338 SLTALPIIETQAGDVSAYIPTNVI----------SITDGQIFLETDLFNQGVRPAINVGI 387
Query: 233 SVRNIGEKA 241
SV +G A
Sbjct: 388 SVSRVGGNA 396
>sp|Q7Z5M8|AB12B_HUMAN Abhydrolase domain-containing protein 12B OS=Homo sapiens
GN=ABHD12B PE=2 SV=1
Length = 362
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 188 GSSNVCIAGHSLGAGFALQVGKALAKEGIYVDTHLFNPPSVSL 230
G + VC+ GHSLG G A K L ++G VD + P ++
Sbjct: 207 GITPVCLWGHSLGTGVATNAAKVLEEKGCPVDAIVLEAPFTNM 249
>sp|P37465|SYM_BACSU Methionine--tRNA ligase OS=Bacillus subtilis (strain 168) GN=metG
PE=3 SV=1
Length = 664
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 216 IYVDTHLFNPPS-VSLAMSVRNIGEKAIFAWNRFKSMLPSSSVTQTSDEGQKITSPAGFK 274
Y+ T ++ P + + + + A+ + R K +T T + GQKI A +
Sbjct: 8 FYITTPIYYPSGKLHIGHAYTTVAGDAMARYKRLKG-FDVRYLTGTDEHGQKIQQKAEQE 66
Query: 275 NWVLHFYGDKTSSELKKWVPHLYVNNSDYI 304
N Y D+ +++++K L ++N D+I
Sbjct: 67 NITPQEYVDRAAADIQKLWKQLEISNDDFI 96
>sp|Q3URK3|TET1_MOUSE Methylcytosine dioxygenase TET1 OS=Mus musculus GN=Tet1 PE=1 SV=2
Length = 2007
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 11 LAPTKEIATALVKEEAHPYAFHVSGPRNVASPNWRDLINSS---WKDPNHKRTVIACFIQ 67
L+ ++++A+ V++E HP A P + P + + S + DP+ IA I
Sbjct: 1836 LSNSQKLASCQVEDERHPEADEPQHPEDDNLPQLDEFWSDSEEIYADPSFGGVAIA-PIH 1894
Query: 68 AVYLLEIDKQENRTEESALAPKWWIPFKYKL 98
L+E ++E S +PK +PF+ L
Sbjct: 1895 GSVLIECARKELHATTSLRSPKRGVPFRVSL 1925
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,242,304
Number of Sequences: 539616
Number of extensions: 5846838
Number of successful extensions: 13313
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 13305
Number of HSP's gapped (non-prelim): 12
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)