BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016411
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 183 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 229
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 183 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 229
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 183 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 229
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 183 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 229
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 183 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 229
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 183 GHF-FTAIVGAEWWAQNFGNSMPFLSWVPFINAIPTNRAVLYLMIAFG 229
G F F +VG + A+ ++P +WVP + +P RA+L G
Sbjct: 282 GRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLG 329
>pdb|4DLF|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group P3221
pdb|4DLM|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group P212121
pdb|4DNM|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Hepes, Space Group P3221
pdb|4DO7|A Chain A, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group C2
pdb|4DO7|B Chain B, Crystal Structure Of An Amidohydrolase (Cog3618) From
Burkholderia Multivorans (Target Efi-500235) With Bound
Zn, Space Group C2
Length = 303
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 254 RALAMLYPFVVLLVGVLAWDYLSPAEIIRKYPHFVVLGTGLAFGFLVGRMILAHL----C 309
R A YP++ +GVLA DYL A + H LG +A GR A L C
Sbjct: 14 RYRAADYPWIGAGMGVLARDYLPDA--LHPLMHAQALGASIAVQARAGRDETAFLLELAC 71
Query: 310 DEPK 313
DE +
Sbjct: 72 DEAR 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.143 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,897,844
Number of Sequences: 62578
Number of extensions: 494007
Number of successful extensions: 989
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 7
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)