Query 016411
Match_columns 390
No_of_seqs 204 out of 1275
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x93_A Hypothetical protein HP 18.1 32 0.0011 23.5 0.4 29 3-31 7-37 (55)
2 2bn5_A PSI; nuclear protein, s 17.3 33 0.0011 21.4 0.3 14 151-164 2-15 (33)
3 2k1o_A Putative; repressor, tr 11.2 57 0.002 23.1 0.2 29 3-31 21-51 (66)
4 3h90_A Ferrous-iron efflux pum 9.6 2.3E+02 0.008 25.7 3.9 50 78-127 108-157 (283)
5 2wp7_A PPPDE peptidase domain- 7.7 1.4E+02 0.0047 25.7 1.3 30 9-39 88-117 (168)
6 1bh9_B TAFII28; histone fold, 7.6 2.3E+02 0.0079 21.6 2.5 47 4-58 1-47 (89)
7 2lyc_A Spindle and kinetochore 7.4 1.1E+02 0.0038 25.2 0.5 17 1-17 7-23 (130)
8 2ki0_A DS119; beta-alpha-beta, 6.7 1.6E+02 0.0054 18.0 0.8 11 5-15 13-23 (36)
9 2jvw_A Uncharacterized protein 6.2 1.5E+02 0.0053 22.5 0.7 16 372-387 31-46 (88)
10 2i68_A Protein EMRE; transmemb 5.5 8.7E+02 0.03 19.5 5.2 34 33-66 46-79 (137)
No 1
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=18.15 E-value=32 Score=23.54 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=21.1
Q ss_pred ccCHhhhhhhhccccccCC--cchhhhhhhc
Q 016411 3 YIGAHGVAALQRYKYSGVD--NSYLAKYVLQ 31 (390)
Q Consensus 3 yi~~~~l~~l~~yky~~~d--~s~l~~yi~~ 31 (390)
|+|+|+-+.|++-.+.-.+ .|++-+||++
T Consensus 7 Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK 37 (55)
T 1x93_A 7 YFSDEQYQKLEKMANEEEESVGSYIKRYILK 37 (55)
T ss_dssp EECHHHHHHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999888887765444 2677777654
No 2
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=17.26 E-value=33 Score=21.43 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhce
Q 016411 151 PFFGATWEHYFTNT 164 (390)
Q Consensus 151 ~f~~~~we~y~tg~ 164 (390)
+.|.++|-||+...
T Consensus 2 ~DYSaQW~eYYrsi 15 (33)
T 2bn5_A 2 ADYSAQWAEYYRSV 15 (33)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHc
Confidence 35889999998863
No 3
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=11.19 E-value=57 Score=23.06 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=20.5
Q ss_pred ccCHhhhhhhhccccccCCc--chhhhhhhc
Q 016411 3 YIGAHGVAALQRYKYSGVDN--SYLAKYVLQ 31 (390)
Q Consensus 3 yi~~~~l~~l~~yky~~~d~--s~l~~yi~~ 31 (390)
|+|+|+-+.|++--+.-.+. |.+-+||++
T Consensus 21 Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK 51 (66)
T 2k1o_A 21 YLSKEEHDVLRRLADEEVESVNSFVKRHILK 51 (66)
T ss_dssp EEEHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999988888877755553 666666654
No 4
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=9.61 E-value=2.3e+02 Score=25.66 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhcHHHHHhcCCCCcccchhhhchhhHHHHHH
Q 016411 78 RWVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFE 127 (390)
Q Consensus 78 ~w~~~~~~~~~~~~~~lD~~DG~~AR~t~~ssplG~~~Dh~~D~~~~~~~ 127 (390)
.|....+.+.+.+...+=..-.+.+||+++..-.++..|+..|.++....
T Consensus 108 ~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~v 157 (283)
T 3h90_A 108 GVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAI 157 (283)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444444456788888777779999999999876543
No 5
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=7.72 E-value=1.4e+02 Score=25.69 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=22.3
Q ss_pred hhhhhccccccCCcchhhhhhhchHHHHHHh
Q 016411 9 VAALQRYKYSGVDNSYLAKYVLQPFWSRFVN 39 (390)
Q Consensus 9 l~~l~~yky~~~d~s~l~~yi~~p~~~~~~~ 39 (390)
++.|++-+|.+.+..++++.. +.|.+.+.+
T Consensus 88 l~~l~~~~~~g~~Y~Ll~~NC-NhFs~~l~~ 117 (168)
T 2wp7_A 88 LSSLGESLFRGEAYNLFEHNC-NTFSNEVAQ 117 (168)
T ss_dssp HHHHHTTTCSGGGCBTTTBSH-HHHHHHHHH
T ss_pred HHHhhhccCCcccCchhhhcc-chhHHHHHH
Confidence 466777679999999999886 556666554
No 6
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=7.64 E-value=2.3e+02 Score=21.56 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=31.7
Q ss_pred cCHhhhhhhhccccccCCcchhhhhhhchHHHHHHhhCCCCCCccHHHHHHHHHH
Q 016411 4 IGAHGVAALQRYKYSGVDNSYLAKYVLQPFWSRFVNFFPLWMPPNMITLTGFIFL 58 (390)
Q Consensus 4 i~~~~l~~l~~yky~~~d~s~l~~yi~~p~~~~~~~~~p~~~aPN~iT~~g~~~~ 58 (390)
.|+||+++-..|+-++-.++-+-+ +.+.+. -..+.+|++..+|.+.=
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~vKr-----l~~~~~---~~~v~~~v~i~v~glaK 47 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAIKR-----LIQSIT---GTSVSQNVVIAMSGISK 47 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHH-----HHHHHH---SSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHH-----HHHHHc---CCCCCccHHHHHHHHHH
Confidence 378999999999887666555433 334443 45678898877665543
No 7
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=7.37 E-value=1.1e+02 Score=25.20 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=10.0
Q ss_pred CcccCHhhhhhhhcccc
Q 016411 1 MGYIGAHGVAALQRYKY 17 (390)
Q Consensus 1 ~~yi~~~~l~~l~~yky 17 (390)
|+|||++|.+.+.+|--
T Consensus 7 ~~~IT~eEF~sIPkYmr 23 (130)
T 2lyc_A 7 VPQITDEEFKTIPKYQL 23 (130)
T ss_dssp SCCCCHHHHTTSCHHHH
T ss_pred eeeecHHHHhccCHHHH
Confidence 45666666666665543
No 8
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=6.68 E-value=1.6e+02 Score=18.04 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=8.5
Q ss_pred CHhhhhhhhcc
Q 016411 5 GAHGVAALQRY 15 (390)
Q Consensus 5 ~~~~l~~l~~y 15 (390)
+||+|+.||+-
T Consensus 13 tpeelkklkee 23 (36)
T 2ki0_A 13 TPEELKKLKEE 23 (36)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 68888888764
No 9
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=6.24 E-value=1.5e+02 Score=22.54 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=12.7
Q ss_pred HHHHhhhCcceeeecc
Q 016411 372 HEITTALGIYCFRITR 387 (390)
Q Consensus 372 ~qic~~L~I~cFsIk~ 387 (390)
.++.+.++|+||+-.|
T Consensus 31 ~~L~~~i~I~CF~~~P 46 (88)
T 2jvw_A 31 EELSYMVNINCFKKDP 46 (88)
T ss_dssp HHHHHHTTSSSTTSSC
T ss_pred HHHHhhcccccCCCCC
Confidence 3678899999997654
No 10
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=5.50 E-value=8.7e+02 Score=19.53 Aligned_cols=34 Identities=6% Similarity=0.137 Sum_probs=17.4
Q ss_pred HHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHH
Q 016411 33 FWSRFVNFFPLWMPPNMITLTGFIFLVTSAVIGY 66 (390)
Q Consensus 33 ~~~~~~~~~p~~~aPN~iT~~g~~~~~~~~~~~~ 66 (390)
+|.+..+..|...+--..|-+|.++..+...+++
T Consensus 46 l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~l 79 (137)
T 2i68_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF 79 (137)
T ss_dssp HHHHHHC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555567778777766656667766665554443
Done!