Query 016411
Match_columns 390
No_of_seqs 204 out of 1275
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 13:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016411.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016411hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qr0a1 d.150.1.1 (A:1-101) 4' 10.6 31 0.0022 24.9 0.4 33 1-33 21-54 (101)
2 d1bh9b_ a.22.1.3 (B:) TAF(II)2 7.3 1.1E+02 0.0081 21.6 2.3 47 5-59 2-48 (89)
3 d1x4pa1 a.217.1.1 (A:8-60) Arg 6.8 1.2E+02 0.0086 19.0 1.9 27 3-29 15-44 (53)
4 d1x93a1 a.43.1.3 (A:31-73) Unc 6.5 72 0.0052 18.8 0.7 28 3-31 7-37 (43)
5 d2a5yb1 a.4.5.80 (B:386-543) C 6.3 48 0.0035 24.8 -0.2 25 91-115 35-59 (158)
6 d1iyjb2 a.171.1.1 (B:2761-2897 4.8 75 0.0054 24.5 0.0 21 1-21 88-108 (137)
7 d2g3qa1 a.5.2.1 (A:1339-1381) 4.4 1.1E+02 0.0077 18.7 0.5 18 1-18 14-31 (43)
8 d2choa3 d.92.2.3 (A:5-126) Glu 4.3 1.8E+02 0.013 20.5 2.1 26 364-389 96-121 (122)
9 d1h4ra3 d.15.1.4 (A:20-103) Me 4.3 1.9E+02 0.014 19.8 2.0 14 368-381 25-38 (84)
10 d1q90d_ f.32.1.1 (D:) Subunit 4.2 4.4E+02 0.032 20.1 4.4 21 76-102 73-93 (156)
No 1
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=10.55 E-value=31 Score=24.87 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=22.5
Q ss_pred CcccCHhhhhhhhccccc-cCCcchhhhhhhchH
Q 016411 1 MGYIGAHGVAALQRYKYS-GVDNSYLAKYVLQPF 33 (390)
Q Consensus 1 ~~yi~~~~l~~l~~yky~-~~d~s~l~~yi~~p~ 33 (390)
+.++|+++.++.++|++. ....+++.+.++|-.
T Consensus 21 ~~~Ls~~e~~r~~r~~~~~dr~~~l~~r~llr~~ 54 (101)
T d1qr0a1 21 MTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSV 54 (101)
T ss_dssp HTTSCHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 357999999999999985 334455555544433
No 2
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.34 E-value=1.1e+02 Score=21.65 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=32.3
Q ss_pred CHhhhhhhhccccccCCcchhhhhhhchHHHHHHhhCCCCCCccHHHHHHHHHHH
Q 016411 5 GAHGVAALQRYKYSGVDNSYLAKYVLQPFWSRFVNFFPLWMPPNMITLTGFIFLV 59 (390)
Q Consensus 5 ~~~~l~~l~~yky~~~d~s~l~~yi~~p~~~~~~~~~p~~~aPN~iT~~g~~~~~ 59 (390)
|+||+++...|+-++-.++-+ +.+.+.+. -..++||+++.++.+.=+
T Consensus 2 s~eQ~~RyE~fRRs~~~K~~v-----krl~~~~~---g~sv~~~v~i~v~giaKv 48 (89)
T d1bh9b_ 2 SEEQLNRYEMYRRSAFPKAAI-----KRLIQSIT---GTSVSQNVVIAMSGISKV 48 (89)
T ss_dssp CHHHHHHHHHHHHCCCCHHHH-----HHHHHHHH---SSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHH-----HHHHHHHc---CCCCChhHHHHHHHHHHH
Confidence 789999999999877665544 33334443 457889998777665443
No 3
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.76 E-value=1.2e+02 Score=18.99 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=20.9
Q ss_pred ccCHhhhhhhhc---cccccCCcchhhhhh
Q 016411 3 YIGAHGVAALQR---YKYSGVDNSYLAKYV 29 (390)
Q Consensus 3 yi~~~~l~~l~~---yky~~~d~s~l~~yi 29 (390)
-+|+++...+|+ |=+=+.++|+-++|-
T Consensus 15 ~LspkeR~~~k~~P~yWFLsde~SlEyKYY 44 (53)
T d1x4pa1 15 SLSPKERTLLKEDPAYWFLSDENSLEYKYY 44 (53)
T ss_dssp CSCHHHHHHHHHSGGGCTTTCCSSSHHHHH
T ss_pred CCCHHHHHHhhcCCCeEEeecccchhHHHH
Confidence 367777766665 888899999998883
No 4
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=6.51 E-value=72 Score=18.79 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=17.9
Q ss_pred ccCHhhhhhhhcccc---ccCCcchhhhhhhc
Q 016411 3 YIGAHGVAALQRYKY---SGVDNSYLAKYVLQ 31 (390)
Q Consensus 3 yi~~~~l~~l~~yky---~~~d~s~l~~yi~~ 31 (390)
|.|+|+-+.|++-.. .+.+ |.+.+|+++
T Consensus 7 yfsdeqyqklekmaneeeesvg-syikryilk 37 (43)
T d1x93a1 7 YFSDEQYQKLEKMANEEEESVG-SYIKRYILK 37 (43)
T ss_dssp EECHHHHHHHHHHHHHTTSCTT-HHHHHHHHH
T ss_pred EecHHHHHHHHHHhhhhHHHHH-HHHHHHHHH
Confidence 678888877776443 2333 666677654
No 5
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=6.33 E-value=48 Score=24.81 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=18.6
Q ss_pred HHHhhhhcHHHHHhcCCCCcccchh
Q 016411 91 YQTFDAVDGKQARRTNSSSPLGELF 115 (390)
Q Consensus 91 ~~~lD~~DG~~AR~t~~ssplG~~~ 115 (390)
+.-=|.+|-+.|.|.+.-|..|+++
T Consensus 35 snee~qlddevadrlkrlskrgall 59 (158)
T d2a5yb1 35 SNEEEQLDDEVADRLKRLSKRGALL 59 (158)
T ss_dssp ----CCCTHHHHHHHHHTTTBSSCS
T ss_pred CChHhhhhHHHHHHHHHHHhccchh
Confidence 4567899999999999989988854
No 6
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.77 E-value=75 Score=24.50 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred CcccCHhhhhhhhccccccCC
Q 016411 1 MGYIGAHGVAALQRYKYSGVD 21 (390)
Q Consensus 1 ~~yi~~~~l~~l~~yky~~~d 21 (390)
|.++|+++++.|.+|+=+-.+
T Consensus 88 e~~lS~eQl~al~~yq~~l~e 108 (137)
T d1iyjb2 88 ETCFSEEQLRALNNYRQMLSD 108 (137)
T ss_dssp ---------------------
T ss_pred HHHcCHHHHHHHHHHHHHHHH
Confidence 468999999999999865444
No 7
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=4.41 E-value=1.1e+02 Score=18.74 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=14.8
Q ss_pred CcccCHhhhhhhhccccc
Q 016411 1 MGYIGAHGVAALQRYKYS 18 (390)
Q Consensus 1 ~~yi~~~~l~~l~~yky~ 18 (390)
|+|=-+++.+.|+++++.
T Consensus 14 MGF~e~~A~~AL~k~~wn 31 (43)
T d2g3qa1 14 MGFTEEEAHNALEKCNWD 31 (43)
T ss_dssp TTSCHHHHHHHHHHHTSC
T ss_pred cCCCHHHHHHHHHHcCCC
Confidence 777778888999998874
No 8
>d2choa3 d.92.2.3 (A:5-126) Glucosaminidase GH84, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=4.34 E-value=1.8e+02 Score=20.46 Aligned_cols=26 Identities=8% Similarity=-0.010 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhCcceeeeccCC
Q 016411 364 LHFATSVIHEITTALGIYCFRITRKE 389 (390)
Q Consensus 364 ~hy~~~VI~qic~~L~I~cFsIk~k~ 389 (390)
+.|+....+|+.+--+|+|..|+-.+
T Consensus 96 ~~yg~qTL~QLi~~~~ip~~~I~D~P 121 (122)
T d2choa3 96 TYYALQTFAQLLKDGKLPEVEIKDYP 121 (122)
T ss_dssp HHHHHHHHHHHCBTTEEEEEEEEECC
T ss_pred HHHHHHHHHHHhhCCCccceEEEecC
Confidence 34667888899888899999997554
No 9
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.33 E-value=1.9e+02 Score=19.76 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhCcc
Q 016411 368 TSVIHEITTALGIY 381 (390)
Q Consensus 368 ~~VI~qic~~L~I~ 381 (390)
-.+.+++|+||||.
T Consensus 25 ~~L~d~Vc~~L~L~ 38 (84)
T d1h4ra3 25 KDLFDLVCRTLGLR 38 (84)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCc
Confidence 35678888888874
No 10
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.16 E-value=4.4e+02 Score=20.06 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=15.7
Q ss_pred CchhHHHHHHHHHHHHHHhhhhcHHHH
Q 016411 76 PPRWVHFAHGLLLFLYQTFDAVDGKQA 102 (390)
Q Consensus 76 ~p~w~~~~~~~~~~~~~~lD~~DG~~A 102 (390)
.|.|.+ ++.|+.+-+++.|.+
T Consensus 73 ~PEWYF------L~~yaiLR~iP~kl~ 93 (156)
T d1q90d_ 73 LPEWYF------YPVFQILRVVPNKLL 93 (156)
T ss_dssp CCCGGG------HHHHHHHHHCSCHHH
T ss_pred Ccchhh------HHHHHHHHhCChHHH
Confidence 489953 467999999987654
Done!