Query 016412
Match_columns 390
No_of_seqs 113 out of 146
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:37:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11891 DUF3411: Domain of un 100.0 5.7E-68 1.2E-72 484.1 11.3 165 180-345 1-180 (180)
2 PRK05325 hypothetical protein; 91.8 0.36 7.8E-06 50.3 6.2 78 56-138 37-118 (401)
3 PLN03138 Protein TOC75; Provis 91.7 0.48 1E-05 53.2 7.4 21 2-22 5-25 (796)
4 TIGR02877 spore_yhbH sporulati 91.6 0.35 7.6E-06 50.0 5.9 78 56-138 49-130 (371)
5 PF04285 DUF444: Protein of un 89.7 0.75 1.6E-05 48.3 6.4 72 56-131 50-128 (421)
6 COG4907 Predicted membrane pro 87.9 0.39 8.5E-06 51.2 2.9 11 30-40 546-556 (595)
7 COG1512 Beta-propeller domains 75.2 2.9 6.2E-05 41.6 3.4 14 81-94 238-251 (271)
8 COG2718 Uncharacterized conser 73.7 6.9 0.00015 41.2 5.8 31 96-130 97-127 (423)
9 COG3028 Uncharacterized protei 70.4 8.3 0.00018 36.7 5.0 83 108-190 15-135 (187)
10 PF02084 Bindin: Bindin; Inte 70.1 8.5 0.00018 37.9 5.2 23 124-146 107-129 (238)
11 PHA00370 III attachment protei 69.5 8.3 0.00018 38.7 5.1 9 250-258 243-251 (297)
12 PF02957 TT_ORF2: TT viral ORF 67.3 5.5 0.00012 34.4 3.0 8 123-130 111-118 (122)
13 PF04360 Serglycin: Serglycin 66.2 3 6.5E-05 38.4 1.2 26 18-43 4-29 (150)
14 PF02979 NHase_alpha: Nitrile 62.8 4.9 0.00011 38.3 2.0 51 145-195 17-74 (188)
15 PF04285 DUF444: Protein of un 62.1 8.4 0.00018 40.7 3.7 15 326-340 369-383 (421)
16 KOG3915 Transcription regulato 61.2 7.2 0.00016 42.1 3.1 12 204-215 203-214 (641)
17 PHA00370 III attachment protei 57.4 23 0.00051 35.7 5.7 7 56-62 75-81 (297)
18 KOG3973 Uncharacterized conser 57.0 16 0.00034 38.4 4.6 10 61-70 412-421 (465)
19 PTZ00146 fibrillarin; Provisio 53.6 15 0.00033 37.0 3.8 9 157-165 135-143 (293)
20 KOG3074 Transcriptional regula 42.9 15 0.00033 36.4 1.9 14 118-131 47-60 (263)
21 PLN03134 glycine-rich RNA-bind 41.1 27 0.00058 31.1 3.0 19 14-32 22-40 (144)
22 PRK05255 hypothetical protein; 40.4 1.1E+02 0.0024 28.8 7.0 61 135-195 47-130 (171)
23 KOG0105 Alternative splicing f 39.0 38 0.00083 33.0 3.8 14 118-131 127-140 (241)
24 PF07631 PSD4: Protein of unkn 36.8 46 0.00099 29.5 3.7 35 134-188 15-51 (128)
25 KOG4096 Uncharacterized conser 33.9 8.1 0.00018 32.0 -1.3 21 318-338 51-71 (75)
26 KOG3158 HSP90 co-chaperone p23 31.9 44 0.00096 31.9 3.0 8 109-116 165-172 (180)
27 PF08671 SinI: Anti-repressor 31.4 50 0.0011 23.0 2.4 21 141-162 9-29 (30)
28 PF00813 FliP: FliP family; I 29.8 2.6E+02 0.0055 27.1 7.7 26 205-230 145-170 (194)
29 PF14024 DUF4240: Protein of u 29.7 1.3E+02 0.0029 26.3 5.4 44 169-212 80-124 (128)
30 KOG1456 Heterogeneous nuclear 29.0 42 0.0009 35.7 2.5 58 138-195 45-125 (494)
31 PF11318 DUF3120: Protein of u 28.9 33 0.00072 33.2 1.7 45 271-325 96-145 (203)
32 TIGR01323 nitrile_alph nitrile 27.6 53 0.0011 31.5 2.7 51 145-195 11-68 (185)
33 PF07096 DUF1358: Protein of u 24.7 76 0.0017 28.7 3.1 53 279-333 31-92 (124)
34 PRK11634 ATP-dependent RNA hel 24.7 1.6E+02 0.0035 32.4 6.2 10 28-37 488-497 (629)
35 PF10247 Romo1: Reactive mitoc 23.9 63 0.0014 26.3 2.1 51 283-337 15-66 (67)
36 PF04858 TH1: TH1 protein; In 22.3 1.5E+02 0.0032 32.8 5.3 49 113-162 24-80 (584)
37 PF15451 DUF4632: Domain of un 21.2 1E+02 0.0022 25.1 2.9 18 124-141 40-57 (71)
38 TIGR03795 chp_BMA0021 conserve 21.0 55 0.0012 29.1 1.4 20 168-187 18-39 (114)
39 PLN02705 beta-amylase 20.3 1.4E+02 0.003 33.7 4.5 8 270-277 308-315 (681)
No 1
>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.
Probab=100.00 E-value=5.7e-68 Score=484.12 Aligned_cols=165 Identities=47% Similarity=0.912 Sum_probs=158.2
Q ss_pred hhhhcCCcchhhhhhc--------------ccCCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcCCchhhhH
Q 016412 180 DRMLADPSFLFKVGTE--------------KRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRI 245 (390)
Q Consensus 180 ~RlLADP~FlfKL~iE--------------~R~e~F~~ElDfV~sd~v~g~v~nf~LVwLlAPt~s~g~~~~s~g~~~~l 245 (390)
|||||||+|||||+|| +|+|+||+|||||++|+++++|+||+||||||||+++++++++.. .+.+
T Consensus 1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~-~~~~ 79 (180)
T PF11891_consen 1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSP-GGGL 79 (180)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCccccccc-chHH
Confidence 7999999999999999 899999999999999999999999999999999999998775432 2689
Q ss_pred HHHhccCCCCccccCCCCCCCChhhhHHHHHhcCeeeehhhhhHhhHHHHHHHHHHHHhhhcCCC-CCCCCCChhhhhHH
Q 016412 246 QNACGSLPSSVFEAERPGCRFSVKQRIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKS-EDDIPVPPLVKSAA 324 (390)
Q Consensus 246 ~~~~~slP~naFq~~~pG~~fsl~qR~ga~v~KG~~l~~VGf~aGlvG~glSN~L~~~Rr~~~~s-~~~~~~PPv~~tAl 324 (390)
|+++++||+||||+++||++||++||++||+|||++|++|||+||++||++||+|+++||+++|+ ++++++|||++||+
T Consensus 80 ~~~~~~~P~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~~rk~~~~~~e~~~~~ppv~~ta~ 159 (180)
T PF11891_consen 80 QKFLGSLPNNAFQKGYPGRSFSLAQRIGAFVYKGAKLAAVGFIAGLVGTGLSNALIAARKKVDPSFEPSVPVPPVLKTAL 159 (180)
T ss_pred HHHHHhChHHHhccCCCCCcccHHHHHHHHHHcchHhhhhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 78999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHhHH
Q 016412 325 LWGVFLAVSSNIRYQIVNGLE 345 (390)
Q Consensus 325 ~wg~fMGvSSNlRYQil~GlE 345 (390)
+||+|||+|||+|||+|||+|
T Consensus 160 ~~g~fmGvSsNlRYQil~GiE 180 (180)
T PF11891_consen 160 GWGAFMGVSSNLRYQILNGIE 180 (180)
T ss_pred HHHHHHhhhHhHHHHHHcCCC
Confidence 999999999999999999987
No 2
>PRK05325 hypothetical protein; Provisional
Probab=91.78 E-value=0.36 Score=50.32 Aligned_cols=78 Identities=32% Similarity=0.410 Sum_probs=35.9
Q ss_pred CCeeecCCCCCcCcCCCCcccccCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHHHHH
Q 016412 56 TPKTIEIPGKITEESADCEPRIHSSGGDGGA----GDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIE 131 (390)
Q Consensus 56 ~p~~~~i~g~~~~~~~~~~~~~~~~~g~g~~----g~~~g~~~~~~g~~ggg~g~g~~~~~~~~e~g~~l~~~~Vm~~a~ 131 (390)
+.+.+||++-+++.-.|...+-..+.|.|.. |+--+-..|+|+|+|.|+++|+|+|+-+ ==++.||.++.--
T Consensus 37 ~~v~IPi~~i~Ep~F~~g~~~~~~~Vg~Gn~~~~~GD~i~rp~g~g~G~G~~~~~geGeD~fe----~els~eE~~~~lf 112 (401)
T PRK05325 37 EVVSIPIRDIDEPKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEGEDYFE----FEISLEELLDLLF 112 (401)
T ss_pred ceEEecCCCCccceEEeCCCCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHHH
Confidence 4677788777776555554421122222222 3322222122222223333333444443 3477888877665
Q ss_pred HcCCCCc
Q 016412 132 LKGVGLP 138 (390)
Q Consensus 132 ~~~~sLP 138 (390)
... .||
T Consensus 113 EdL-eLP 118 (401)
T PRK05325 113 EDL-ELP 118 (401)
T ss_pred hhc-CCC
Confidence 433 344
No 3
>PLN03138 Protein TOC75; Provisional
Probab=91.66 E-value=0.48 Score=53.17 Aligned_cols=21 Identities=24% Similarity=0.176 Sum_probs=16.1
Q ss_pred CcccccccCCCCCCCCCCCCc
Q 016412 2 SACSSTFRLPNLPNISPQNHN 22 (390)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (390)
++|.+.++-++++.-.||+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (796)
T PLN03138 5 STMVSAAASTSLSSSRPQLSS 25 (796)
T ss_pred cccceeccCCCccCCCccccc
Confidence 578888888888887777654
No 4
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=91.61 E-value=0.35 Score=49.98 Aligned_cols=78 Identities=28% Similarity=0.389 Sum_probs=35.9
Q ss_pred CCeeecCCCCCcCcCCC---CcccccCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHHHHH
Q 016412 56 TPKTIEIPGKITEESAD---CEPRIHSSGGDGGAGDSPGGG-GGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIE 131 (390)
Q Consensus 56 ~p~~~~i~g~~~~~~~~---~~~~~~~~~g~g~~g~~~g~~-~~~~g~~ggg~g~g~~~~~~~~e~g~~l~~~~Vm~~a~ 131 (390)
+.+.+||++-+++.-.| .+.+++.+.|+---|+-=+-. +|+|||+|.|.|+|+|+|+=| ==++.||.++.--
T Consensus 49 ~~V~IPir~l~Ep~F~~g~~~~~~Vg~Gng~~~~GD~i~rp~~~~ggg~g~gag~geGed~fe----~e~s~eE~~~~lf 124 (371)
T TIGR02877 49 KKIKVPIRGLKEYRFRYDWNKQKRVGQGDGNEKVGDVIGRERAGGEGGGGKGAGDQEGEDYYE----TEVTLEELFELLF 124 (371)
T ss_pred ceEEccCCCCccceEEeCCCCCCeecCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHHH
Confidence 36777777766654333 333444333322223331111 111112223344444555444 3478888887765
Q ss_pred HcCCCCc
Q 016412 132 LKGVGLP 138 (390)
Q Consensus 132 ~~~~sLP 138 (390)
.-. .||
T Consensus 125 EdL-eLP 130 (371)
T TIGR02877 125 EDL-ELP 130 (371)
T ss_pred hhc-cCC
Confidence 543 355
No 5
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=89.72 E-value=0.75 Score=48.27 Aligned_cols=72 Identities=35% Similarity=0.528 Sum_probs=31.7
Q ss_pred CCeeecCCCCCcCcCCCCc----ccccCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCcccccCCccCHHHHHH
Q 016412 56 TPKTIEIPGKITEESADCE----PRIHSSGGDGGAGDS---PGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMK 128 (390)
Q Consensus 56 ~p~~~~i~g~~~~~~~~~~----~~~~~~~g~g~~g~~---~g~~~~~~g~~ggg~g~g~~~~~~~~e~g~~l~~~~Vm~ 128 (390)
+.+.+||.+=+++.-.|-. ..+..+.|++..|+- +++++|+|+|+|+|.|+|+|+|+-+ --++.||.++
T Consensus 50 ~~V~IP~r~l~Ep~Fr~g~gg~~~~Vg~Gnge~~~GD~I~rp~~g~g~g~G~g~gag~geGeD~fe----~els~eE~~~ 125 (421)
T PF04285_consen 50 EKVSIPIRGLEEPRFRHGQGGQREHVGPGNGEFKEGDVIGRPPGGGGGGDGGGQGAGDGEGEDDFE----FELSREEFLD 125 (421)
T ss_pred ceEeecCCCCCCCceeCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCeEE----EEEEHHHHHH
Confidence 3566666665555333322 333333333323332 2222222222233344444554433 4467777766
Q ss_pred HHH
Q 016412 129 EIE 131 (390)
Q Consensus 129 ~a~ 131 (390)
.--
T Consensus 126 llf 128 (421)
T PF04285_consen 126 LLF 128 (421)
T ss_pred HhH
Confidence 543
No 6
>COG4907 Predicted membrane protein [Function unknown]
Probab=87.86 E-value=0.39 Score=51.21 Aligned_cols=11 Identities=0% Similarity=-0.067 Sum_probs=5.7
Q ss_pred eeeecccccCC
Q 016412 30 FLSLRHSTATN 40 (390)
Q Consensus 30 ~~~~~~~~~~~ 40 (390)
|.-.||+-.+.
T Consensus 546 ~~i~h~nysr~ 556 (595)
T COG4907 546 SPIFHNNYSRS 556 (595)
T ss_pred eeEEecchhhh
Confidence 34456665544
No 7
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=75.16 E-value=2.9 Score=41.63 Aligned_cols=14 Identities=50% Similarity=1.025 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCC
Q 016412 81 GGDGGAGDSPGGGG 94 (390)
Q Consensus 81 ~g~g~~g~~~g~~~ 94 (390)
+|.|++|+++|+++
T Consensus 238 ~g~g~~g~~gg~~~ 251 (271)
T COG1512 238 SGSGGSGGSGGGSS 251 (271)
T ss_pred CCCCCCCCCCCCCC
Confidence 45555555555444
No 8
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=73.67 E-value=6.9 Score=41.22 Aligned_cols=31 Identities=39% Similarity=0.596 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCccCHHHHHHHH
Q 016412 96 GGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEI 130 (390)
Q Consensus 96 ~~g~~ggg~g~g~~~~~~~~e~g~~l~~~~Vm~~a 130 (390)
+|.|.|+|.|+|++||+=+ --++-+||+..-
T Consensus 97 ~g~g~g~~ag~~egED~F~----~~is~~e~~dll 127 (423)
T COG2718 97 GGSGKGQAAGDGEGEDEFV----FQISREEVLDLL 127 (423)
T ss_pred CCCCCCCccCCCCCcchhh----eeeehhHHHHHH
Confidence 3333444445554444333 345556655443
No 9
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.37 E-value=8.3 Score=36.69 Aligned_cols=83 Identities=23% Similarity=0.208 Sum_probs=42.6
Q ss_pred CCCCCcccccCCccCH-------------HHHHHHHHHcCC--CCcHHHHHHHHHc-CCCH-------------------
Q 016412 108 EGNDGEEKEFGPILKF-------------EEVMKEIELKGV--GLPDDMMEAAKTV-GIRK------------------- 152 (390)
Q Consensus 108 ~~~~~~~~e~g~~l~~-------------~~Vm~~a~~~~~--sLP~Dl~~A~~~g-gis~------------------- 152 (390)
+++++||+||=..-+- +++.+......+ -||.||++|++.. +|.+
T Consensus 15 ~~~~ded~e~iwvSKSqiKRd~~aLq~LGe~L~~L~~~~L~KiPL~E~L~~Ai~~aqri~~~~arrRQlQyIGKlmR~~D 94 (187)
T COG3028 15 DDEEDEDDEIIWVSKSQIKRDAEALQDLGEELVDLTKAALAKIPLDEDLLEAIELAQRIKSEIARRRQLQYIGKLMRDRD 94 (187)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5666666677665443 122222222222 2578999998643 2333
Q ss_pred -HHHHHHHhhcCCcch-HHHHHHhhhhhhhhhhcC-Ccchh
Q 016412 153 -MFLLRYLDLQGSVWP-LGFLMRYCFMLRDRMLAD-PSFLF 190 (390)
Q Consensus 153 -~~L~rfl~L~~s~~~-l~~L~r~f~gfR~RlLAD-P~Flf 190 (390)
+-++.+||=-.+..- --.+.++.-.||+||+|| +.=+.
T Consensus 95 vepI~~~Ldkl~~~~~q~~a~lHklE~~RdrLia~GD~Alt 135 (187)
T COG3028 95 VEPIRAALDKLRNRHNQQVALLHKLEQLRDRLIAEGDGALT 135 (187)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 334444443322210 123445677888888888 54433
No 10
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=70.11 E-value=8.5 Score=37.86 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Q 016412 124 EEVMKEIELKGVGLPDDMMEAAK 146 (390)
Q Consensus 124 ~~Vm~~a~~~~~sLP~Dl~~A~~ 146 (390)
|.+.+-.+++..+||-|+-+=++
T Consensus 107 ~~ikavLgaTKiDLPVDINDPYD 129 (238)
T PF02084_consen 107 EDIKAVLGATKIDLPVDINDPYD 129 (238)
T ss_pred HHHHHHhcccccccccccCChhh
Confidence 33444456677788887766553
No 11
>PHA00370 III attachment protein
Probab=69.54 E-value=8.3 Score=38.73 Aligned_cols=9 Identities=22% Similarity=0.209 Sum_probs=4.5
Q ss_pred ccCCCCccc
Q 016412 250 GSLPSSVFE 258 (390)
Q Consensus 250 ~slP~naFq 258 (390)
..||+-+|-
T Consensus 243 n~C~~FV~~ 251 (297)
T PHA00370 243 HGCTPFVFA 251 (297)
T ss_pred CCCCcceee
Confidence 345555553
No 12
>PF02957 TT_ORF2: TT viral ORF2; InterPro: IPR004118 This entry represents the Gyroviral VP2 protein and TT viral ORF2. Torque teno virus (TTV) is a nonenveloped and single-stranded DNA virus that was initially isolated from a Japanese patient with hepatitis of unknown aetiology, and which has since been found to infect both healthy and diseased individuals []. Numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein of unknown function. Gyroviruses are small circular single stranded viruses, such as the Chicken anaemia virus. The VP2 protein contains a set of conserved cysteine and histidine residues suggesting a zinc binding domain. VP2 may act as a scaffold protein in virion assembly and may also play a role in intracellular signaling during viral replication.
Probab=67.26 E-value=5.5 Score=34.36 Aligned_cols=8 Identities=13% Similarity=0.439 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 016412 123 FEEVMKEI 130 (390)
Q Consensus 123 ~~~Vm~~a 130 (390)
+|++++++
T Consensus 111 ld~L~aa~ 118 (122)
T PF02957_consen 111 LDELFAAA 118 (122)
T ss_pred HHHHhhhh
Confidence 45554443
No 13
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=66.18 E-value=3 Score=38.39 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=18.3
Q ss_pred CCCCcccccceeeeeecccccCCccc
Q 016412 18 PQNHNIVMPTTVFLSLRHSTATNPAL 43 (390)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (390)
+++..||+-..+.|-|.||..-.++-
T Consensus 4 ~~~~rl~LaLalil~l~ssvqG~P~r 29 (150)
T PF04360_consen 4 LQCSRLVLALALILVLDSSVQGAPAR 29 (150)
T ss_pred cccchhHHHHHHHHHhccccccCcch
Confidence 46677888878888787777655544
No 14
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=62.79 E-value=4.9 Score=38.33 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=33.1
Q ss_pred HHHcCCCHHHHHHHHhhcCCc-chH---HHHHHhh--hhhhhhhhcCCcchh-hhhhc
Q 016412 145 AKTVGIRKMFLLRYLDLQGSV-WPL---GFLMRYC--FMLRDRMLADPSFLF-KVGTE 195 (390)
Q Consensus 145 ~~~ggis~~~L~rfl~L~~s~-~~l---~~L~r~f--~gfR~RlLADP~Flf-KL~iE 195 (390)
++.|.|+++.++++.+...+. .|. +-+-|.+ ++||+||||||.=.. -++++
T Consensus 17 ~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~Dp~FK~rLLaD~~aA~~elG~~ 74 (188)
T PF02979_consen 17 IEKGLITPAEVDRIIETYESRVGPRNGARVVARAWTDPAFKARLLADPTAAIKELGID 74 (188)
T ss_dssp HHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH-HHHHHHHHHSHHHHHHHTT--
T ss_pred HHcCCCCHHHHHHHHHHHHhccCccccceeehhhhCCHHHHHHHHHCHHHHHHHcCCC
Confidence 456777999999988876543 232 4444555 999999999997633 35555
No 15
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=62.13 E-value=8.4 Score=40.65 Aligned_cols=15 Identities=7% Similarity=-0.073 Sum_probs=7.3
Q ss_pred HHHHHhhhhhhHHHH
Q 016412 326 WGVFLAVSSNIRYQI 340 (390)
Q Consensus 326 wg~fMGvSSNlRYQi 340 (390)
|-+|.-|...-+||.
T Consensus 369 ~f~Y~Ei~~~~~~~~ 383 (421)
T PF04285_consen 369 YFGYGEITQPGRHSS 383 (421)
T ss_pred eEEEEEeccCccchH
Confidence 334444544555555
No 16
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=61.23 E-value=7.2 Score=42.09 Aligned_cols=12 Identities=42% Similarity=0.886 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 016412 204 EFELYLADLLVG 215 (390)
Q Consensus 204 ElDfV~sd~v~g 215 (390)
-+|+++-.+|-|
T Consensus 203 afdlFLKhlVGG 214 (641)
T KOG3915|consen 203 AFDLFLKHLVGG 214 (641)
T ss_pred HHHHHHHHHhch
Confidence 456666666544
No 17
>PHA00370 III attachment protein
Probab=57.41 E-value=23 Score=35.65 Aligned_cols=7 Identities=14% Similarity=0.055 Sum_probs=3.1
Q ss_pred CCeeecC
Q 016412 56 TPKTIEI 62 (390)
Q Consensus 56 ~p~~~~i 62 (390)
+|+...+
T Consensus 75 ~P~g~~~ 81 (297)
T PHA00370 75 KPTGSAD 81 (297)
T ss_pred eeccccc
Confidence 4555333
No 18
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=57.00 E-value=16 Score=38.38 Aligned_cols=10 Identities=20% Similarity=0.159 Sum_probs=5.0
Q ss_pred cCCCCCcCcC
Q 016412 61 EIPGKITEES 70 (390)
Q Consensus 61 ~i~g~~~~~~ 70 (390)
-|+|..++-+
T Consensus 412 ~~sgsg~qg~ 421 (465)
T KOG3973|consen 412 WISGSGVQGT 421 (465)
T ss_pred eeecccccCC
Confidence 3555555533
No 19
>PTZ00146 fibrillarin; Provisional
Probab=53.58 E-value=15 Score=37.00 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=4.3
Q ss_pred HHHhhcCCc
Q 016412 157 RYLDLQGSV 165 (390)
Q Consensus 157 rfl~L~~s~ 165 (390)
+.|||=+.+
T Consensus 135 ~VLDLGaG~ 143 (293)
T PTZ00146 135 KVLYLGAAS 143 (293)
T ss_pred EEEEeCCcC
Confidence 345555444
No 20
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=42.93 E-value=15 Score=36.45 Aligned_cols=14 Identities=36% Similarity=0.313 Sum_probs=8.0
Q ss_pred CCccCHHHHHHHHH
Q 016412 118 GPILKFEEVMKEIE 131 (390)
Q Consensus 118 g~~l~~~~Vm~~a~ 131 (390)
|+.||..||=..+.
T Consensus 47 GRflKIaE~g~~~~ 60 (263)
T KOG3074|consen 47 GRFLKIAEVGAGGR 60 (263)
T ss_pred cceEEEEEeccCCc
Confidence 66666666544433
No 21
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=41.11 E-value=27 Score=31.05 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=8.1
Q ss_pred CCCCCCCCcccccceeeee
Q 016412 14 PNISPQNHNIVMPTTVFLS 32 (390)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (390)
|.-+.+..---++++||+.
T Consensus 22 ~~~~~~~~~~~~~~~lfVg 40 (144)
T PLN03134 22 PVTSMLGSLRLMSTKLFIG 40 (144)
T ss_pred ccccccccccCCCCEEEEe
Confidence 3333333333344555554
No 22
>PRK05255 hypothetical protein; Provisional
Probab=40.41 E-value=1.1e+02 Score=28.83 Aligned_cols=61 Identities=21% Similarity=0.094 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHHHc-CC--------------------CHHHHHHHHhhcCCcchH-HHHHHhhhhhhhhhhc-CCcchhh
Q 016412 135 VGLPDDMMEAAKTV-GI--------------------RKMFLLRYLDLQGSVWPL-GFLMRYCFMLRDRMLA-DPSFLFK 191 (390)
Q Consensus 135 ~sLP~Dl~~A~~~g-gi--------------------s~~~L~rfl~L~~s~~~l-~~L~r~f~gfR~RlLA-DP~FlfK 191 (390)
..||.+|.+|+... .| ..+.++.+++-.....-. ....+..-.||+||++ |+.-+..
T Consensus 47 lpL~e~L~~Ai~ea~ri~~~eA~RRqlqyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~~d~al~e 126 (171)
T PRK05255 47 LPLDEDLRDAILEAQRITSHEARRRQLQYIGKLMRNEDVEPIRAALDKLKNKHNQETARFHKLERWRDRLLAEGDDALTE 126 (171)
T ss_pred CCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34678888887543 23 334555555554443211 2334557899999999 6666655
Q ss_pred hhhc
Q 016412 192 VGTE 195 (390)
Q Consensus 192 L~iE 195 (390)
+.-+
T Consensus 127 ~~~~ 130 (171)
T PRK05255 127 FLEE 130 (171)
T ss_pred HHHH
Confidence 5444
No 23
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=38.99 E-value=38 Score=33.02 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=8.7
Q ss_pred CCccCHHHHHHHHH
Q 016412 118 GPILKFEEVMKEIE 131 (390)
Q Consensus 118 g~~l~~~~Vm~~a~ 131 (390)
|..+++..-|+||+
T Consensus 127 gSWQDLKDHmReaG 140 (241)
T KOG0105|consen 127 GSWQDLKDHMREAG 140 (241)
T ss_pred CchHHHHHHHHhhC
Confidence 45566666666665
No 24
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=36.78 E-value=46 Score=29.49 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=25.1
Q ss_pred CCCCc-HHHHHHHHHcCC-CHHHHHHHHhhcCCcchHHHHHHhhhhhhhhhhcCCcc
Q 016412 134 GVGLP-DDMMEAAKTVGI-RKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSF 188 (390)
Q Consensus 134 ~~sLP-~Dl~~A~~~ggi-s~~~L~rfl~L~~s~~~l~~L~r~f~gfR~RlLADP~F 188 (390)
-.+.| +.|.+|++.|.+ ++++|.+ -.+|||+||++
T Consensus 15 w~s~PD~~L~~aA~~g~L~~~~~l~~--------------------q~~RML~dpr~ 51 (128)
T PF07631_consen 15 WGSPPDAELLDAAAAGELRTPEQLRA--------------------QAERMLADPRA 51 (128)
T ss_pred hcCCCCHHHHHHHHhCCCCCHHHHHH--------------------HHHHHHcCccH
Confidence 34667 678899999988 5554432 26789999987
No 25
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.95 E-value=8.1 Score=32.01 Aligned_cols=21 Identities=33% Similarity=0.740 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHhhhhhhHH
Q 016412 318 PLVKSAALWGVFLAVSSNIRY 338 (390)
Q Consensus 318 Pv~~tAl~wg~fMGvSSNlRY 338 (390)
-++.+|.++|+||++-|-+||
T Consensus 51 t~~~SagtFG~FM~igs~Ir~ 71 (75)
T KOG4096|consen 51 TMLQSAGTFGLFMGIGSGIRC 71 (75)
T ss_pred HHHhccchhhhhhhhhhheec
Confidence 588999999999999999887
No 26
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=31.90 E-value=44 Score=31.88 Aligned_cols=8 Identities=50% Similarity=0.788 Sum_probs=3.3
Q ss_pred CCCCcccc
Q 016412 109 GNDGEEKE 116 (390)
Q Consensus 109 ~~~~~~~e 116 (390)
++|+||+|
T Consensus 165 ~ndeedee 172 (180)
T KOG3158|consen 165 DNDEEDEE 172 (180)
T ss_pred cccchhhh
Confidence 33444443
No 27
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=31.45 E-value=50 Score=22.95 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=14.4
Q ss_pred HHHHHHHcCCCHHHHHHHHhhc
Q 016412 141 MMEAAKTVGIRKMFLLRYLDLQ 162 (390)
Q Consensus 141 l~~A~~~ggis~~~L~rfl~L~ 162 (390)
+++ |..-|||.+.+++||+.+
T Consensus 9 i~e-A~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 9 IKE-AKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHH-HHHTT--HHHHHHHHHHH
T ss_pred HHH-HHHcCCCHHHHHHHHHhC
Confidence 345 446679999999999875
No 28
>PF00813 FliP: FliP family; InterPro: IPR005838 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia. The type III secretion system is of great interest as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis []. However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself [], type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. It is believed that the family of type III inner membrane proteins are used as structural moieties in a complex with several other subunits [], including the ATPase necessary for driving the secretion system. One such set of inner membrane proteins, termed "P" here for nomenclature purposes, includes the Salmonella and Shigella SpaP, the Yersinia YscR, the Erwinia HrcR, and the Xanthamonas Pro2 genes [], as well as several FliP flagellar biosynthesis genes []. FliP is an ~30Kd protein containing three or four transmembrane (TM) regions.; GO: 0009306 protein secretion, 0016020 membrane
Probab=29.82 E-value=2.6e+02 Score=27.07 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Q 016412 205 FELYLADLLVGLVVDIALVGMLAPYA 230 (390)
Q Consensus 205 lDfV~sd~v~g~v~nf~LVwLlAPt~ 230 (390)
+=|++.|+|+++|+=.+=|-|+.|+.
T Consensus 145 lPFlvIDlvVasiLmamGMmMl~P~~ 170 (194)
T PF00813_consen 145 LPFLVIDLVVASILMAMGMMMLPPVT 170 (194)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCchH
Confidence 34899999999999999999999975
No 29
>PF14024 DUF4240: Protein of unknown function (DUF4240)
Probab=29.67 E-value=1.3e+02 Score=26.32 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=32.8
Q ss_pred HHHHHhhhhhhhhhhcCCcchhhhhhcccCCC-chhHHHHHHHHH
Q 016412 169 GFLMRYCFMLRDRMLADPSFLFKVGTEKRGKD-FWSEFELYLADL 212 (390)
Q Consensus 169 ~~L~r~f~gfR~RlLADP~FlfKL~iE~R~e~-F~~ElDfV~sd~ 212 (390)
.||+-+=+.+=+++++||..|-.+-.-..... .++|+.+|..+.
T Consensus 80 ~wLIs~Gre~y~~~l~dPd~La~~~~~~~~~~~~~E~l~yva~~a 124 (128)
T PF14024_consen 80 CWLISQGREVYEKALADPDSLAELPAVFDEDAPEFEELLYVAADA 124 (128)
T ss_pred HHHHHccHHHHHHHHhCHHHHhcCccchhcccccHHHHHHHHHHH
Confidence 66666667788999999998877664444333 789999988764
No 30
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=29.00 E-value=42 Score=35.73 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=30.9
Q ss_pred cHHHHHHHHHcCC---------CHHHHHHHHhhcCCc-----------chH--HHHHHhh-hhhhhhhhcCCcchhhhhh
Q 016412 138 PDDMMEAAKTVGI---------RKMFLLRYLDLQGSV-----------WPL--GFLMRYC-FMLRDRMLADPSFLFKVGT 194 (390)
Q Consensus 138 P~Dl~~A~~~ggi---------s~~~L~rfl~L~~s~-----------~~l--~~L~r~f-~gfR~RlLADP~FlfKL~i 194 (390)
-+||.+|++..|- ...+|+.|=|++... +.. ..|++.- .-=.+|+--|+.=+.||.+
T Consensus 45 eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl 124 (494)
T KOG1456|consen 45 EADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPGDESATPNKVLL 124 (494)
T ss_pred hhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhccCCCCCCCCCeEEE
Confidence 3688888876652 455666666655431 000 1222211 3335666677777777665
Q ss_pred c
Q 016412 195 E 195 (390)
Q Consensus 195 E 195 (390)
=
T Consensus 125 ~ 125 (494)
T KOG1456|consen 125 F 125 (494)
T ss_pred E
Confidence 4
No 31
>PF11318 DUF3120: Protein of unknown function (DUF3120); InterPro: IPR021468 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.94 E-value=33 Score=33.24 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=31.7
Q ss_pred hHHHHHhcCeeeehhhhhHhhHHHHHHHHHHHHhhhcCCC-----CCCCCCChhhhhHHH
Q 016412 271 RIATYFYKGVLYGSVGLVCGIIGQGIANLIMTAKRNIKKS-----EDDIPVPPLVKSAAL 325 (390)
Q Consensus 271 R~ga~v~KG~~l~~VGf~aGlvG~glSN~L~~~Rr~~~~s-----~~~~~~PPv~~tAl~ 325 (390)
|+|+.+| +++++||+++...+..-..++-- .++.+.|+++.+|+.
T Consensus 96 kvg~~FY----------LgSLlGTA~TD~y~~ltglmp~Wrqvm~a~~~~A~~il~~A~~ 145 (203)
T PF11318_consen 96 KVGNWFY----------LGSLLGTAITDLYFYLTGLMPYWRQVMQADPDEAPPILQSALA 145 (203)
T ss_pred eeehhhH----------HHHHHhHHHHHHHHHHHccHHHhHHHHhcCHHHhHHHHHHHHH
Confidence 8888888 67899999999876654333321 234456889988875
No 32
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=27.58 E-value=53 Score=31.48 Aligned_cols=51 Identities=14% Similarity=0.011 Sum_probs=35.7
Q ss_pred HHHcCCCHHHHHHHHhhcCCc-chH---HHHHHhh--hhhhhhhhcCCcchhh-hhhc
Q 016412 145 AKTVGIRKMFLLRYLDLQGSV-WPL---GFLMRYC--FMLRDRMLADPSFLFK-VGTE 195 (390)
Q Consensus 145 ~~~ggis~~~L~rfl~L~~s~-~~l---~~L~r~f--~gfR~RlLADP~FlfK-L~iE 195 (390)
++.|.|+++.+.+.++.-.+. .|. +-+.|.+ +.||.|||+|..=..+ +++.
T Consensus 11 ~eKGli~~~~id~~i~~~~~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~aa~~elg~~ 68 (185)
T TIGR01323 11 KSKGLIPEGAVDQLTSLYENEWGPENGAKVVAKAWVDPEFRALLLKDATAACAQFGYT 68 (185)
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhHHhcCHHHHHHHHhChHHHHHHcCCC
Confidence 456667999988888765542 232 4455555 9999999999986555 6765
No 33
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=24.74 E-value=76 Score=28.69 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=30.0
Q ss_pred CeeeehhhhhHhhHHHHHHHHHHHHhhhcCCCC-----C----CCCCChhhhhHHHHHHHHhhh
Q 016412 279 GVLYGSVGLVCGIIGQGIANLIMTAKRNIKKSE-----D----DIPVPPLVKSAALWGVFLAVS 333 (390)
Q Consensus 279 G~~l~~VGf~aGlvG~glSN~L~~~Rr~~~~s~-----~----~~~~PPv~~tAl~wg~fMGvS 333 (390)
++.|+.|+.++-++|-+. .|..+||+.++.. . +.....+-.-|+.||-.+.+.
T Consensus 31 ~~FL~~Va~~s~~aGF~~--tl~~aKKk~p~~F~kg~~~~~~l~esGasLAlRALgWGTlyA~~ 92 (124)
T PF07096_consen 31 GAFLGGVAGASALAGFGT--TLALAKKKSPKWFSKGISQTKALHESGASLALRALGWGTLYAVC 92 (124)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhcCcHHHhccCcCcccCCcchHHHHHHHHhHHHHHHHH
Confidence 344555666665555544 4555676554431 1 112235678899999776554
No 34
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=24.67 E-value=1.6e+02 Score=32.36 Aligned_cols=10 Identities=0% Similarity=-0.021 Sum_probs=5.7
Q ss_pred eeeeeecccc
Q 016412 28 TVFLSLRHST 37 (390)
Q Consensus 28 ~~~~~~~~~~ 37 (390)
+.|+++-|.+
T Consensus 488 ~~~~~~g~~~ 497 (629)
T PRK11634 488 LYRIEVGRDD 497 (629)
T ss_pred EEEEeccccc
Confidence 4666665443
No 35
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=23.85 E-value=63 Score=26.29 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=31.2
Q ss_pred ehhhhhHhhHHHHHHHHHHHHhhhcCCCCC-CCCCChhhhhHHHHHHHHhhhhhhH
Q 016412 283 GSVGLVCGIIGQGIANLIMTAKRNIKKSED-DIPVPPLVKSAALWGVFLAVSSNIR 337 (390)
Q Consensus 283 ~~VGf~aGlvG~glSN~L~~~Rr~~~~s~~-~~~~PPv~~tAl~wg~fMGvSSNlR 337 (390)
++||.+.|++-...+ ..|....+.+. ..-.--++.++.+.|.||++=|=+|
T Consensus 15 ~~VG~~~G~l~G~~~----~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IR 66 (67)
T PF10247_consen 15 GAVGGAFGALFGTFS----AFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIR 66 (67)
T ss_pred hHHHhhhhhhhhhHH----HhccCCCCcchHhHHhHHHhcchhHHHHHHhhhcccc
Confidence 456666665554443 34544444321 1112358899999999999987665
No 36
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.26 E-value=1.5e+02 Score=32.83 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=29.2
Q ss_pred cccccCCccCHHHHHHHHHHcCCCC-----c---HHHHHHHHHcCCCHHHHHHHHhhc
Q 016412 113 EEKEFGPILKFEEVMKEIELKGVGL-----P---DDMMEAAKTVGIRKMFLLRYLDLQ 162 (390)
Q Consensus 113 ~~~e~g~~l~~~~Vm~~a~~~~~sL-----P---~Dl~~A~~~ggis~~~L~rfl~L~ 162 (390)
+|++-+.--+-++|++++.++...= | .++.+=++.|| .|+.+.++|.=.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~l~~~D~Imep~i~~~i~~y~~~gG-~p~~vv~~Ls~~ 80 (584)
T PF04858_consen 24 DEEESEADEEPEEVLEECLRRLSQPDAIMEPSIFDTIKRYFRAGG-DPEEVVELLSEN 80 (584)
T ss_pred ccccccCCCChHHHHHHHHHhcCCCCeeeCchHHHHHHHHHHCCC-CHHHHHHHHHHh
Confidence 3333444456788888888877652 2 45555555555 566666666533
No 37
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=21.25 E-value=1e+02 Score=25.10 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCCCcHHH
Q 016412 124 EEVMKEIELKGVGLPDDM 141 (390)
Q Consensus 124 ~~Vm~~a~~~~~sLP~Dl 141 (390)
|+||.-|.|-.--||...
T Consensus 40 drvl~parrwrrplpsnv 57 (71)
T PF15451_consen 40 DRVLAPARRWRRPLPSNV 57 (71)
T ss_pred HHHHhHHHHhccCCCccc
Confidence 889888888888888543
No 38
>TIGR03795 chp_BMA0021 conserved hypothetical protein, BMA_0021 family. Members of this protein family are found sparsely, mostly in members of the genus Burkholderia. Members often occur as tandem homologous genes, such as BMA_0021 and BMA_0022 in Burkholderia mallei ATCC 23344. The genes regularly are encoded near the so-called docking protein of TOMM (thiazole/oxazole-modified microcins) biosynthetic clusters, suggesting a role in bacteriocin biosynthesis. The function is unknown.
Probab=20.98 E-value=55 Score=29.10 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=15.9
Q ss_pred HHHHHHhh--hhhhhhhhcCCc
Q 016412 168 LGFLMRYC--FMLRDRMLADPS 187 (390)
Q Consensus 168 l~~L~r~f--~gfR~RlLADP~ 187 (390)
++.+-+.+ +.||+||++||+
T Consensus 18 lraIA~AW~DpaFr~eLl~DPk 39 (114)
T TIGR03795 18 LRAIALAWHSPEFKDELLADPV 39 (114)
T ss_pred HHHHHHHhCCHHHHHHHHHCHH
Confidence 46565555 899999999996
No 39
>PLN02705 beta-amylase
Probab=20.25 E-value=1.4e+02 Score=33.71 Aligned_cols=8 Identities=0% Similarity=0.060 Sum_probs=3.3
Q ss_pred hhHHHHHh
Q 016412 270 QRIATYFY 277 (390)
Q Consensus 270 qR~ga~v~ 277 (390)
+++..++.
T Consensus 308 ~~L~~mvr 315 (681)
T PLN02705 308 RELFNIIR 315 (681)
T ss_pred HHHHHHHH
Confidence 44444443
Done!