Query 016412
Match_columns 390
No_of_seqs 113 out of 146
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qyh_A CO-type nitrIle hydrata 67.7 3.2 0.00011 39.2 3.1 51 145-195 48-105 (226)
2 3hht_A NitrIle hydratase alpha 57.9 7.1 0.00024 36.7 3.5 51 145-195 37-94 (216)
3 1ugp_A NitrIle hydratase alpha 37.7 19 0.00065 33.5 2.9 50 145-194 28-84 (203)
4 4fm4_A NitrIle hydratase alpha 37.4 13 0.00046 34.7 1.9 44 145-188 21-70 (209)
5 2zzd_C Thiocyanate hydrolase s 37.3 15 0.0005 35.0 2.2 45 145-189 39-88 (243)
6 3a8g_A NitrIle hydratase subun 36.5 12 0.00041 34.9 1.4 51 145-195 31-88 (207)
7 3u5c_J 40S ribosomal protein S 31.4 7.8 0.00027 35.8 -0.7 11 106-116 187-197 (197)
8 3ng9_A Capsid protein; beta ba 28.5 16 0.00054 39.7 0.9 11 169-179 298-308 (736)
9 3ntt_A Capsid protein; gene th 28.4 14 0.00048 40.0 0.5 11 169-179 288-298 (724)
10 3p8c_D Wiskott-aldrich syndrom 28.2 14 0.00046 35.8 0.3 7 140-146 220-226 (279)
11 2i7u_A Four-alpha-helix bundle 21.6 30 0.001 26.1 1.0 10 124-133 49-58 (62)
No 1
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=67.65 E-value=3.2 Score=39.16 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=36.9
Q ss_pred HHHcCCCHHHHHHHHh-hcCCcchH---HHHHHhh--hhhhhhhhcCCcc-hhhhhhc
Q 016412 145 AKTVGIRKMFLLRYLD-LQGSVWPL---GFLMRYC--FMLRDRMLADPSF-LFKVGTE 195 (390)
Q Consensus 145 ~~~ggis~~~L~rfl~-L~~s~~~l---~~L~r~f--~gfR~RlLADP~F-lfKL~iE 195 (390)
++.|.|+++.+.++++ ++..-.|. +-+-|.+ +.||.|||+||.= +-.++++
T Consensus 48 ~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~aAi~elG~~ 105 (226)
T 3qyh_A 48 IEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTAGIAELGFS 105 (226)
T ss_dssp HHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHTTTCC
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHHHHHHHcCCC
Confidence 5678889999999999 54443343 4444555 9999999999976 4446665
No 2
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=57.87 E-value=7.1 Score=36.66 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=36.1
Q ss_pred HHHcCCCHHHHHHHHhh-cCCcchH---HHHHHhh--hhhhhhhhcCCcc-hhhhhhc
Q 016412 145 AKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPSF-LFKVGTE 195 (390)
Q Consensus 145 ~~~ggis~~~L~rfl~L-~~s~~~l---~~L~r~f--~gfR~RlLADP~F-lfKL~iE 195 (390)
++.|.|+++.+.++.+. +..-.|. +-+-|.+ +.||.|||+||.= +..++++
T Consensus 37 ~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~aAi~elG~~ 94 (216)
T 3hht_A 37 IEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETVLRELGYY 94 (216)
T ss_dssp HHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHTCC
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHHHHHcCCC
Confidence 45677799999999986 4443343 3444444 8999999999976 4456665
No 3
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=37.66 E-value=19 Score=33.49 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHHcCCCHHHHHHHHhh-cCCcchH---HHHHHhh--hhhhhhhhcCCcchhh-hhh
Q 016412 145 AKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPSFLFK-VGT 194 (390)
Q Consensus 145 ~~~ggis~~~L~rfl~L-~~s~~~l---~~L~r~f--~gfR~RlLADP~FlfK-L~i 194 (390)
++.|.|+++.+.++.+. +....|. +-+.|.+ +.||.|||+|+.=..| +++
T Consensus 28 ~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~aA~~elG~ 84 (203)
T 1ugp_A 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEACKELGI 84 (203)
T ss_dssp HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHTTTC
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChHHHHHHcCC
Confidence 45677799999999985 4332343 3444555 8999999999986554 444
No 4
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=37.38 E-value=13 Score=34.66 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=31.3
Q ss_pred HHHcCCCHHHHHHHHh-hcCCcchH---HHHHHhh--hhhhhhhhcCCcc
Q 016412 145 AKTVGIRKMFLLRYLD-LQGSVWPL---GFLMRYC--FMLRDRMLADPSF 188 (390)
Q Consensus 145 ~~~ggis~~~L~rfl~-L~~s~~~l---~~L~r~f--~gfR~RlLADP~F 188 (390)
++.|.|+++.+..|.+ ++..-.|. +-+-|.+ +.||+|||+|+.=
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~a 70 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGVA 70 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHHH
Confidence 3468889999999998 44333333 4455555 8999999999853
No 5
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=37.27 E-value=15 Score=35.04 Aligned_cols=45 Identities=9% Similarity=-0.064 Sum_probs=32.1
Q ss_pred HHHcCCCHHHHHHHHhhcCCcchH---HHHHHhh--hhhhhhhhcCCcch
Q 016412 145 AKTVGIRKMFLLRYLDLQGSVWPL---GFLMRYC--FMLRDRMLADPSFL 189 (390)
Q Consensus 145 ~~~ggis~~~L~rfl~L~~s~~~l---~~L~r~f--~gfR~RlLADP~Fl 189 (390)
++.|.|+++.+.++.+.-....|. +-+.|.+ +.||+|||+|+.=.
T Consensus 39 ~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~aa 88 (243)
T 2zzd_C 39 IEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEA 88 (243)
T ss_dssp HHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChHHH
Confidence 456777999999998853222344 4455555 89999999998653
No 6
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=36.52 E-value=12 Score=34.93 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=34.4
Q ss_pred HHHcCCCHHHHHHHHhh-cCCcchH---HHHHHhh--hhhhhhhhcCCcch-hhhhhc
Q 016412 145 AKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPSFL-FKVGTE 195 (390)
Q Consensus 145 ~~~ggis~~~L~rfl~L-~~s~~~l---~~L~r~f--~gfR~RlLADP~Fl-fKL~iE 195 (390)
++.|.|+++.+.++.+. +....|. +-+.|.+ +.||.|||+|+.=. --+++.
T Consensus 31 ~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~aAi~elG~~ 88 (207)
T 3a8g_A 31 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGYL 88 (207)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHTTCC
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHHHHHHHcCCC
Confidence 44666799999998885 3332343 4445555 89999999999763 335554
No 7
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=31.45 E-value=7.8 Score=35.75 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=0.0
Q ss_pred CCCCCCCcccc
Q 016412 106 DGEGNDGEEKE 116 (390)
Q Consensus 106 ~g~~~~~~~~e 116 (390)
+||+||+||+|
T Consensus 187 ~~~~~~~~~~~ 197 (197)
T 3u5c_J 187 AADEADEADEE 197 (197)
T ss_dssp -----------
T ss_pred CCccccccccC
Confidence 33444444443
No 8
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=28.45 E-value=16 Score=39.74 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=5.1
Q ss_pred HHHHHhhhhhh
Q 016412 169 GFLMRYCFMLR 179 (390)
Q Consensus 169 ~~L~r~f~gfR 179 (390)
.+|+....+||
T Consensus 298 Q~Lin~~~~ir 308 (736)
T 3ng9_A 298 QRLINNNWGFR 308 (736)
T ss_dssp HHHHHHEEEEE
T ss_pred HHHHHhcccee
Confidence 34444444444
No 9
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=28.39 E-value=14 Score=40.01 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=4.6
Q ss_pred HHHHHhhhhhh
Q 016412 169 GFLMRYCFMLR 179 (390)
Q Consensus 169 ~~L~r~f~gfR 179 (390)
.+|+....+||
T Consensus 288 Q~Lin~y~~~r 298 (724)
T 3ntt_A 288 QRLINNYWGFR 298 (724)
T ss_dssp HHHHHHEEEEE
T ss_pred HHHHHhhccee
Confidence 33444444444
No 10
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=28.22 E-value=14 Score=35.84 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 016412 140 DMMEAAK 146 (390)
Q Consensus 140 Dl~~A~~ 146 (390)
||.+||.
T Consensus 220 ~Ll~air 226 (279)
T 3p8c_D 220 VLLEAIR 226 (279)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555553
No 11
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=21.60 E-value=30 Score=26.11 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=4.4
Q ss_pred HHHHHHHHHc
Q 016412 124 EEVMKEIELK 133 (390)
Q Consensus 124 ~~Vm~~a~~~ 133 (390)
||+.+.|+.|
T Consensus 49 eelfklaeer 58 (62)
T 2i7u_A 49 EELFKLAEER 58 (62)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
Done!