Query 016412
Match_columns 390
No_of_seqs 113 out of 146
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 13:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016412.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016412hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ugpa_ d.149.1.1 (A:) Cobalt- 67.8 1.4 0.0001 38.9 2.9 69 124-195 10-85 (203)
2 d1v29a_ d.149.1.1 (A:) Cobalt- 65.7 2 0.00015 37.8 3.5 51 145-195 27-84 (203)
3 d2qdya1 d.149.1.1 (A:10-206) I 49.8 2.7 0.00019 36.9 1.4 50 146-195 23-79 (197)
4 d1x3zb1 a.189.1.1 (B:253-309) 24.6 10 0.00073 26.8 0.7 27 169-195 29-55 (57)
5 d2c5ra1 a.251.1.1 (A:66-129) E 15.9 69 0.005 22.8 3.7 41 124-164 7-48 (64)
6 d1b0na1 a.34.1.1 (A:74-108) Si 15.3 52 0.0038 21.1 2.6 21 142-163 10-30 (35)
7 d1bl0a1 a.4.1.8 (A:9-62) MarA 11.7 1E+02 0.0074 19.7 3.4 48 123-171 5-52 (54)
8 d2cqxa1 a.4.1.1 (A:8-66) LAG1 10.1 1.9E+02 0.014 19.4 4.6 37 125-161 14-52 (59)
9 d2jfga1 c.5.1.1 (A:1-93) UDP-N 9.5 58 0.0042 23.1 1.6 25 277-303 3-27 (93)
10 d1lnza1 b.117.1.1 (A:1-157) Ob 9.5 1.1E+02 0.008 24.7 3.6 9 80-88 11-19 (157)
No 1
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=67.80 E-value=1.4 Score=38.89 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHhh-cCCcchH---HHHHHhh--hhhhhhhhcCCcc-hhhhhhc
Q 016412 124 EEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPSF-LFKVGTE 195 (390)
Q Consensus 124 ~~Vm~~a~~~~~sLP~Dl~~A~~~ggis~~~L~rfl~L-~~s~~~l---~~L~r~f--~gfR~RlLADP~F-lfKL~iE 195 (390)
|+.-.+...|-.+|=.=| ++.|.|+++.+.++++. +..-.|. +-+.|.+ +.||+|||+|+.= +..+++.
T Consensus 10 e~~~~~~~~RvkAle~lL---ieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~~aA~~e~G~~ 85 (203)
T d1ugpa_ 10 EEIQKEITARVKALESML---IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEACKELGIG 85 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHTTTCC
T ss_pred hhccccHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Confidence 455556666655554444 45788899999999994 4332344 4555555 9999999999865 4445554
No 2
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=65.66 E-value=2 Score=37.81 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=37.0
Q ss_pred HHHcCCCHHHHHHHHh-hcCCcchH---HHHHHhh--hhhhhhhhcCCcc-hhhhhhc
Q 016412 145 AKTVGIRKMFLLRYLD-LQGSVWPL---GFLMRYC--FMLRDRMLADPSF-LFKVGTE 195 (390)
Q Consensus 145 ~~~ggis~~~L~rfl~-L~~s~~~l---~~L~r~f--~gfR~RlLADP~F-lfKL~iE 195 (390)
++.|.|+++.+.+.++ ++..-.|. +-+-|.+ +.||+|||+|+.= +..+++.
T Consensus 27 ieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~aA~~e~G~~ 84 (203)
T d1v29a_ 27 IEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPETVLRELGYF 84 (203)
T ss_dssp HHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHHHHHHHHTCC
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHHHHHcCCC
Confidence 5678889999999998 44432344 5555666 9999999999875 4445554
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=49.78 E-value=2.7 Score=36.87 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=35.7
Q ss_pred HHcCCCHHHHHHHHhh-cCCcchH---HHHHHhh--hhhhhhhhcCCcc-hhhhhhc
Q 016412 146 KTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPSF-LFKVGTE 195 (390)
Q Consensus 146 ~~ggis~~~L~rfl~L-~~s~~~l---~~L~r~f--~gfR~RlLADP~F-lfKL~iE 195 (390)
+.|.|+++.+.++++. +..-.|. +-+-|.+ +.||.|||+||.= +-.++++
T Consensus 23 eKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~Dp~FK~rLL~D~~aAi~elG~~ 79 (197)
T d2qdya1 23 GKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGYL 79 (197)
T ss_dssp TTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHTTCC
T ss_pred HcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4677799999999984 5553344 4455555 8999999999875 4445555
No 4
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.56 E-value=10 Score=26.83 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHhhhhhhhhhhcCCcchhhhhhc
Q 016412 169 GFLMRYCFMLRDRMLADPSFLFKVGTE 195 (390)
Q Consensus 169 ~~L~r~f~gfR~RlLADP~FlfKL~iE 195 (390)
--|+.+++-+||.+++||.-...+..|
T Consensus 29 e~ls~ryp~lre~im~npe~fismlle 55 (57)
T d1x3zb1 29 ENISARYPQLREHIMANPEVFVSMLLE 55 (57)
T ss_dssp HHHHTTCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHhCHHHHHHHHHh
Confidence 566777899999999999877666654
No 5
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]}
Probab=15.94 E-value=69 Score=22.81 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHcCC-CHHHHHHHHhhcCC
Q 016412 124 EEVMKEIELKGVGLPDDMMEAAKTVGI-RKMFLLRYLDLQGS 164 (390)
Q Consensus 124 ~~Vm~~a~~~~~sLP~Dl~~A~~~ggi-s~~~L~rfl~L~~s 164 (390)
..|+.+-+++...+|.|+.+-+---.+ +...+.+|.+-+..
T Consensus 7 ~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~ 48 (64)
T d2c5ra1 7 VAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRT 48 (64)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCcHHHHHHHHHhhhhhHHHHHHHHHhhHh
Confidence 368999999999999999998877777 77778888887643
No 6
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=15.34 E-value=52 Score=21.12 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=16.8
Q ss_pred HHHHHHcCCCHHHHHHHHhhcC
Q 016412 142 MEAAKTVGIRKMFLLRYLDLQG 163 (390)
Q Consensus 142 ~~A~~~ggis~~~L~rfl~L~~ 163 (390)
.+|. .-|||.++.+.||++++
T Consensus 10 keAM-~SGvSK~QFrEflef~k 30 (35)
T d1b0na1 10 RDAM-TSGVSKKQFREFLDYQK 30 (35)
T ss_dssp HHHH-HSCCCHHHHHHHHHHHH
T ss_pred HHHH-HccCCHHHHHHHHHHHH
Confidence 4555 56699999999999885
No 7
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=11.70 E-value=1e+02 Score=19.70 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHhhcCCcchHHHH
Q 016412 123 FEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFL 171 (390)
Q Consensus 123 ~~~Vm~~a~~~~~sLP~Dl~~A~~~ggis~~~L~rfl~L~~s~~~l~~L 171 (390)
.++|++--.++.. =|-++.+.++.-++|+..+.|.|.=...-.|..+|
T Consensus 5 i~~v~~yI~~~~~-~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~tp~~Yl 52 (54)
T d1bl0a1 5 IHSILDWIEDNLE-SPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYI 52 (54)
T ss_dssp HHHHHHHHHTTTT-SCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHhccC-CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHh
Confidence 4667777777764 47777777888999999999999877666666665
No 8
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.11 E-value=1.9e+02 Score=19.41 Aligned_cols=37 Identities=5% Similarity=0.112 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCCc--HHHHHHHHHcCCCHHHHHHHHhh
Q 016412 125 EVMKEIELKGVGLP--DDMMEAAKTVGIRKMFLLRYLDL 161 (390)
Q Consensus 125 ~Vm~~a~~~~~sLP--~Dl~~A~~~ggis~~~L~rfl~L 161 (390)
+||+++-.+...-| .++.+.++..++++.+++.||.-
T Consensus 14 ~iLE~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~WFqN 52 (59)
T d2cqxa1 14 DTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRH 52 (59)
T ss_dssp THHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHh
Confidence 47777776654455 67778888899999999988853
No 9
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=9.52 E-value=58 Score=23.08 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=19.1
Q ss_pred hcCeeeehhhhhHhhHHHHHHHHHHHH
Q 016412 277 YKGVLYGSVGLVCGIIGQGIANLIMTA 303 (390)
Q Consensus 277 ~KG~~l~~VGf~aGlvG~glSN~L~~~ 303 (390)
+||.+++.+|+ |.-|.++++.|.+.
T Consensus 3 ~~~K~v~ViGl--G~sG~s~a~~L~~~ 27 (93)
T d2jfga1 3 YQGKNVVIIGL--GLTGLSCVDFFLAR 27 (93)
T ss_dssp CTTCCEEEECC--SHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeE--CHHHHHHHHHHHHC
Confidence 57889999988 55688888887543
No 10
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=9.49 E-value=1.1e+02 Score=24.65 Aligned_cols=9 Identities=67% Similarity=1.276 Sum_probs=5.4
Q ss_pred CCCCCCCCC
Q 016412 80 SGGDGGAGD 88 (390)
Q Consensus 80 ~~g~g~~g~ 88 (390)
.+|.||+|.
T Consensus 11 ~aG~GG~G~ 19 (157)
T d1lnza1 11 KGGDGGNGM 19 (157)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCcc
Confidence 356666664
Done!