Query 016413
Match_columns 390
No_of_seqs 265 out of 2567
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2.8E-47 6.1E-52 374.8 30.1 252 98-387 302-555 (571)
2 PHA02713 hypothetical protein; 100.0 1.2E-44 2.7E-49 357.6 27.3 250 97-386 272-541 (557)
3 PLN02193 nitrile-specifier pro 100.0 9.9E-41 2.2E-45 324.6 34.2 319 31-379 119-469 (470)
4 PLN02153 epithiospecifier prot 100.0 9.9E-41 2.1E-45 313.4 31.1 299 59-379 5-340 (341)
5 KOG4441 Proteins containing BT 100.0 3.9E-41 8.4E-46 331.4 26.0 276 30-340 282-564 (571)
6 PHA02713 hypothetical protein; 100.0 8.5E-41 1.8E-45 330.4 25.6 263 34-333 259-544 (557)
7 PLN02153 epithiospecifier prot 100.0 4.6E-39 1E-43 302.1 31.0 262 104-386 4-292 (341)
8 PLN02193 nitrile-specifier pro 100.0 5.6E-39 1.2E-43 312.4 31.9 260 99-388 139-420 (470)
9 PHA03098 kelch-like protein; P 100.0 3.9E-39 8.5E-44 320.6 28.9 257 98-390 265-523 (534)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 7.2E-39 1.6E-43 301.8 28.1 293 66-376 1-344 (346)
11 PRK14131 N-acetylneuraminic ac 100.0 2.3E-38 5E-43 300.6 28.0 305 62-384 18-374 (376)
12 TIGR03548 mutarot_permut cycli 100.0 6.2E-38 1.3E-42 292.4 26.2 247 98-360 40-316 (323)
13 PHA02790 Kelch-like protein; P 100.0 8.6E-37 1.9E-41 297.8 28.9 210 124-385 267-477 (480)
14 TIGR03547 muta_rot_YjhT mutatr 100.0 3.3E-36 7.1E-41 283.7 28.1 250 112-390 1-310 (346)
15 KOG4693 Uncharacterized conser 100.0 9.4E-37 2E-41 257.8 17.8 284 24-358 15-313 (392)
16 PHA03098 kelch-like protein; P 100.0 7.3E-36 1.6E-40 297.1 26.7 272 32-338 250-527 (534)
17 TIGR03548 mutarot_permut cycli 100.0 3.4E-35 7.4E-40 273.9 26.8 242 118-389 3-290 (323)
18 PHA02790 Kelch-like protein; P 100.0 1.3E-35 2.7E-40 289.6 24.3 189 98-329 288-477 (480)
19 PRK14131 N-acetylneuraminic ac 100.0 3.5E-35 7.6E-40 278.8 22.6 276 21-327 27-373 (376)
20 KOG4693 Uncharacterized conser 100.0 5.9E-33 1.3E-37 234.8 19.6 257 108-386 3-284 (392)
21 KOG0379 Kelch repeat-containin 100.0 4.2E-29 9.1E-34 242.6 23.9 269 19-357 57-342 (482)
22 KOG0379 Kelch repeat-containin 100.0 1.1E-28 2.5E-33 239.6 24.9 244 114-389 56-312 (482)
23 KOG1230 Protein containing rep 100.0 6.6E-29 1.4E-33 221.9 18.0 257 113-385 61-347 (521)
24 KOG4152 Host cell transcriptio 100.0 1.2E-27 2.7E-32 218.7 15.7 273 6-293 16-343 (830)
25 KOG1230 Protein containing rep 99.9 1.2E-25 2.6E-30 201.2 16.8 256 66-329 57-347 (521)
26 KOG4152 Host cell transcriptio 99.9 2.3E-23 5E-28 190.9 19.0 289 59-359 15-344 (830)
27 COG3055 Uncharacterized protei 99.9 4.7E-20 1E-24 163.3 19.3 267 98-379 59-375 (381)
28 COG3055 Uncharacterized protei 99.8 2.3E-18 5E-23 152.7 18.9 257 110-390 28-338 (381)
29 KOG2437 Muskelin [Signal trans 99.4 9.4E-14 2E-18 128.0 4.2 258 107-387 239-543 (723)
30 PF13964 Kelch_6: Kelch motif 99.4 2.5E-12 5.4E-17 84.6 6.7 49 118-166 1-49 (50)
31 PF13964 Kelch_6: Kelch motif 99.3 3E-12 6.5E-17 84.3 6.4 50 168-219 1-50 (50)
32 KOG2437 Muskelin [Signal trans 99.3 4.8E-13 1E-17 123.4 1.3 192 59-251 237-470 (723)
33 PF01344 Kelch_1: Kelch motif; 99.2 1.1E-11 2.4E-16 80.5 4.3 47 118-164 1-47 (47)
34 PF01344 Kelch_1: Kelch motif; 99.1 1.3E-10 2.8E-15 75.4 4.7 47 168-216 1-47 (47)
35 PF07646 Kelch_2: Kelch motif; 99.1 4.4E-10 9.6E-15 73.4 6.3 47 118-164 1-49 (49)
36 PF13418 Kelch_4: Galactose ox 99.0 2.1E-10 4.5E-15 75.1 4.1 47 118-164 1-48 (49)
37 PF13415 Kelch_3: Galactose ox 99.0 9.8E-10 2.1E-14 71.8 5.6 49 178-227 1-49 (49)
38 PF07646 Kelch_2: Kelch motif; 99.0 1.9E-09 4E-14 70.4 6.4 49 168-216 1-49 (49)
39 PF13415 Kelch_3: Galactose ox 99.0 2.2E-09 4.7E-14 70.1 6.1 48 128-177 1-49 (49)
40 PF13418 Kelch_4: Galactose ox 98.9 2.7E-09 5.8E-14 69.8 4.6 47 168-216 1-48 (49)
41 smart00612 Kelch Kelch domain. 98.9 3.9E-09 8.4E-14 68.2 5.0 47 180-229 1-47 (47)
42 smart00612 Kelch Kelch domain. 98.8 1.8E-08 3.9E-13 65.1 5.2 47 130-179 1-47 (47)
43 PF07250 Glyoxal_oxid_N: Glyox 98.7 2.1E-06 4.5E-11 75.4 17.6 152 146-334 47-210 (243)
44 PF13854 Kelch_5: Kelch motif 98.7 5.4E-08 1.2E-12 61.0 5.4 41 115-155 1-42 (42)
45 PLN02772 guanylate kinase 98.6 5.9E-07 1.3E-11 83.7 11.1 86 116-206 22-109 (398)
46 PF07250 Glyoxal_oxid_N: Glyox 98.4 1.9E-05 4.1E-10 69.4 15.6 152 198-389 47-209 (243)
47 PLN02772 guanylate kinase 98.4 2E-06 4.2E-11 80.3 9.4 70 168-239 24-97 (398)
48 TIGR01640 F_box_assoc_1 F-box 98.4 0.0001 2.3E-09 65.2 20.2 181 98-290 15-215 (230)
49 TIGR01640 F_box_assoc_1 F-box 98.3 0.00013 2.7E-09 64.7 20.3 198 145-380 14-230 (230)
50 PF13854 Kelch_5: Kelch motif 98.3 1.3E-06 2.8E-11 54.7 5.2 40 166-206 2-41 (42)
51 PF03089 RAG2: Recombination a 98.0 0.00058 1.2E-08 60.0 16.5 158 131-294 40-231 (337)
52 PRK11138 outer membrane biogen 97.7 0.031 6.6E-07 53.8 24.4 254 28-354 65-342 (394)
53 PF07893 DUF1668: Protein of u 97.6 0.0057 1.2E-07 57.4 18.2 128 177-335 75-220 (342)
54 PF03089 RAG2: Recombination a 97.0 0.023 5E-07 50.2 13.4 150 88-240 46-231 (337)
55 PRK11138 outer membrane biogen 97.0 0.26 5.7E-06 47.3 21.6 138 123-290 64-213 (394)
56 PF13360 PQQ_2: PQQ-like domai 96.8 0.35 7.5E-06 42.5 21.8 207 98-380 4-232 (238)
57 TIGR03300 assembly_YfgL outer 96.5 0.78 1.7E-05 43.7 26.6 210 27-289 60-286 (377)
58 PRK13684 Ycf48-like protein; P 96.3 0.96 2.1E-05 42.4 22.4 197 59-291 33-234 (334)
59 PF12768 Rax2: Cortical protei 96.3 0.072 1.6E-06 48.3 11.9 121 132-268 2-130 (281)
60 PF07893 DUF1668: Protein of u 96.3 0.12 2.5E-06 48.6 13.6 112 98-217 87-221 (342)
61 PRK13684 Ycf48-like protein; P 96.1 0.99 2.1E-05 42.3 18.9 203 99-356 111-322 (334)
62 TIGR03300 assembly_YfgL outer 95.9 1.7 3.7E-05 41.3 21.6 133 122-290 59-197 (377)
63 PF12768 Rax2: Cortical protei 95.7 0.27 5.8E-06 44.6 12.9 121 182-331 2-130 (281)
64 PF13360 PQQ_2: PQQ-like domai 95.6 1.5 3.2E-05 38.4 17.1 175 146-383 4-198 (238)
65 TIGR03866 PQQ_ABC_repeats PQQ- 94.3 3.9 8.4E-05 36.8 21.3 141 34-208 2-148 (300)
66 KOG2055 WD40 repeat protein [G 94.2 1.4 3E-05 41.9 13.1 147 34-208 226-377 (514)
67 KOG0310 Conserved WD40 repeat- 94.1 2.6 5.6E-05 40.3 14.6 175 127-358 121-301 (487)
68 KOG2055 WD40 repeat protein [G 93.8 3.6 7.8E-05 39.2 14.9 138 129-292 225-366 (514)
69 TIGR03866 PQQ_ABC_repeats PQQ- 93.6 5.3 0.00011 35.9 17.6 67 129-211 1-67 (300)
70 cd00200 WD40 WD40 domain, foun 93.1 5.6 0.00012 34.7 20.1 22 129-156 105-126 (289)
71 PF08450 SGL: SMP-30/Gluconola 92.7 1.3 2.8E-05 39.3 10.3 104 97-213 22-130 (246)
72 PF08450 SGL: SMP-30/Gluconola 92.3 4.6 0.0001 35.7 13.4 86 128-235 11-103 (246)
73 PRK04922 tolB translocation pr 91.9 13 0.00028 36.2 21.4 62 145-214 228-289 (433)
74 PF14870 PSII_BNR: Photosynthe 91.9 10 0.00022 34.9 19.7 195 59-289 4-204 (302)
75 PF03178 CPSF_A: CPSF A subuni 91.4 2.4 5.2E-05 39.4 10.9 140 179-354 42-190 (321)
76 smart00284 OLF Olfactomedin-li 90.5 12 0.00027 33.3 15.8 185 128-353 34-241 (255)
77 PRK11028 6-phosphogluconolacto 90.4 15 0.00032 34.1 18.0 101 130-251 3-109 (330)
78 PLN00033 photosystem II stabil 90.2 18 0.00039 34.8 21.3 98 99-212 112-214 (398)
79 PRK00178 tolB translocation pr 90.0 19 0.00042 34.8 21.5 62 145-214 223-284 (430)
80 PLN00033 photosystem II stabil 90.0 19 0.00041 34.6 19.2 51 103-160 162-214 (398)
81 PF02191 OLF: Olfactomedin-lik 89.9 14 0.0003 33.0 14.1 184 31-235 29-237 (250)
82 PRK11028 6-phosphogluconolacto 89.8 17 0.00036 33.8 25.0 93 98-206 58-157 (330)
83 PRK04792 tolB translocation pr 89.7 21 0.00046 34.9 22.7 62 145-214 242-303 (448)
84 KOG0310 Conserved WD40 repeat- 89.6 15 0.00032 35.4 14.0 104 127-251 78-183 (487)
85 PF05096 Glu_cyclase_2: Glutam 89.2 4.7 0.0001 36.1 10.1 113 160-292 36-149 (264)
86 cd00094 HX Hemopexin-like repe 88.9 14 0.0003 31.5 14.0 23 345-381 156-178 (194)
87 PF02191 OLF: Olfactomedin-lik 88.8 17 0.00037 32.5 14.9 186 128-353 30-236 (250)
88 PF10282 Lactonase: Lactonase, 88.7 11 0.00024 35.4 13.1 97 133-234 3-104 (345)
89 PF14870 PSII_BNR: Photosynthe 88.4 20 0.00044 32.9 20.2 260 32-356 27-295 (302)
90 smart00284 OLF Olfactomedin-li 87.8 20 0.00042 32.1 14.1 184 32-234 34-241 (255)
91 PRK04792 tolB translocation pr 87.6 30 0.00064 33.9 19.2 191 145-386 198-390 (448)
92 cd00200 WD40 WD40 domain, foun 87.6 18 0.00039 31.4 18.8 63 128-207 62-125 (289)
93 PF05096 Glu_cyclase_2: Glutam 87.2 7.8 0.00017 34.7 10.1 96 127-238 54-149 (264)
94 KOG2048 WD40 repeat protein [G 86.9 33 0.00073 34.5 15.0 31 52-84 48-78 (691)
95 TIGR02800 propeller_TolB tol-p 86.7 30 0.00066 33.1 21.3 62 145-214 214-275 (417)
96 PLN00181 protein SPA1-RELATED; 86.7 43 0.00093 35.5 17.3 98 129-251 545-647 (793)
97 PRK05137 tolB translocation pr 85.8 36 0.00078 33.1 22.1 63 145-215 226-288 (435)
98 PF13859 BNR_3: BNR repeat-lik 85.0 20 0.00043 33.2 12.1 199 172-389 2-217 (310)
99 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.6 47 0.001 33.4 23.2 98 122-235 63-172 (527)
100 PF13088 BNR_2: BNR repeat-lik 84.4 13 0.00028 33.4 10.8 221 105-352 28-275 (275)
101 PF08268 FBA_3: F-box associat 84.0 14 0.00031 28.9 9.6 83 175-266 2-87 (129)
102 PF12217 End_beta_propel: Cata 83.8 31 0.00067 30.7 13.0 183 104-292 112-334 (367)
103 PF09910 DUF2139: Uncharacteri 83.6 35 0.00075 31.1 15.0 161 158-353 26-219 (339)
104 KOG0296 Angio-associated migra 83.6 38 0.00083 31.6 12.9 141 171-357 67-211 (399)
105 PF10282 Lactonase: Lactonase, 83.2 41 0.00088 31.6 19.9 144 98-266 63-231 (345)
106 TIGR02800 propeller_TolB tol-p 81.8 50 0.0011 31.6 20.3 147 197-386 214-362 (417)
107 PF08268 FBA_3: F-box associat 81.8 21 0.00046 28.0 9.8 84 126-213 3-88 (129)
108 PLN00181 protein SPA1-RELATED; 81.6 66 0.0014 34.1 16.1 58 179-251 545-605 (793)
109 PTZ00421 coronin; Provisional 80.6 64 0.0014 32.1 17.7 102 128-251 87-197 (493)
110 PRK10115 protease 2; Provision 80.2 79 0.0017 32.9 19.7 196 145-387 199-403 (686)
111 KOG2048 WD40 repeat protein [G 79.7 73 0.0016 32.2 17.8 175 37-235 169-350 (691)
112 PLN03215 ascorbic acid mannose 79.4 59 0.0013 30.9 13.3 103 154-270 189-305 (373)
113 KOG0281 Beta-TrCP (transducin 79.2 42 0.00091 31.2 11.4 66 268-360 355-422 (499)
114 PRK04922 tolB translocation pr 79.1 65 0.0014 31.3 21.0 21 196-216 227-247 (433)
115 PF03178 CPSF_A: CPSF A subuni 78.9 30 0.00064 32.0 11.2 122 145-289 62-190 (321)
116 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.8 42 0.00092 33.6 12.8 119 223-383 64-196 (527)
117 PLN03215 ascorbic acid mannose 78.7 40 0.00086 32.0 11.7 105 260-389 189-305 (373)
118 PRK03629 tolB translocation pr 78.1 70 0.0015 31.1 21.5 63 145-215 223-285 (429)
119 PRK05137 tolB translocation pr 77.5 72 0.0016 31.0 21.2 66 144-217 181-246 (435)
120 cd00094 HX Hemopexin-like repe 76.9 45 0.00098 28.3 15.1 94 123-237 11-119 (194)
121 PRK00178 tolB translocation pr 76.8 75 0.0016 30.7 21.6 150 196-387 222-372 (430)
122 cd00216 PQQ_DH Dehydrogenases 76.6 83 0.0018 31.2 22.0 97 121-233 54-161 (488)
123 KOG0316 Conserved WD40 repeat- 76.6 53 0.0011 28.9 13.5 101 125-251 67-172 (307)
124 cd00216 PQQ_DH Dehydrogenases 75.9 87 0.0019 31.1 17.1 94 174-287 57-161 (488)
125 KOG0649 WD40 repeat protein [G 74.2 63 0.0014 28.6 12.2 116 155-292 99-227 (325)
126 KOG0289 mRNA splicing factor [ 73.8 87 0.0019 30.1 13.1 121 171-336 350-476 (506)
127 PF02897 Peptidase_S9_N: Proly 71.8 97 0.0021 29.7 14.0 240 98-386 151-412 (414)
128 COG4257 Vgb Streptogramin lyas 70.1 84 0.0018 28.5 10.7 71 128-213 243-313 (353)
129 PF12217 End_beta_propel: Cata 66.0 1E+02 0.0022 27.6 11.6 205 123-355 20-257 (367)
130 KOG0278 Serine/threonine kinas 65.4 1E+02 0.0022 27.5 10.5 125 196-360 164-291 (334)
131 PF06433 Me-amine-dh_H: Methyl 65.0 8.9 0.00019 35.6 4.0 127 98-234 68-210 (342)
132 PRK02889 tolB translocation pr 64.4 1.4E+02 0.0031 28.9 18.9 63 145-215 176-238 (427)
133 KOG1036 Mitotic spindle checkp 63.9 1.2E+02 0.0026 27.8 12.5 88 146-251 36-123 (323)
134 KOG0646 WD40 repeat protein [G 63.9 1.4E+02 0.0031 28.8 14.9 62 121-190 84-146 (476)
135 COG1520 FOG: WD40-like repeat 62.9 1.4E+02 0.003 28.2 18.7 92 124-234 64-159 (370)
136 PRK03629 tolB translocation pr 62.7 1.5E+02 0.0033 28.7 20.7 204 131-386 167-371 (429)
137 COG1520 FOG: WD40-like repeat 62.6 1.4E+02 0.003 28.2 16.2 225 28-291 64-305 (370)
138 KOG0649 WD40 repeat protein [G 61.1 1.2E+02 0.0026 26.9 15.6 150 108-291 100-264 (325)
139 PRK02889 tolB translocation pr 60.9 1.6E+02 0.0036 28.4 22.6 62 145-214 220-281 (427)
140 COG4946 Uncharacterized protei 59.7 1.8E+02 0.0039 28.5 16.2 88 107-213 216-303 (668)
141 KOG0289 mRNA splicing factor [ 59.4 69 0.0015 30.7 8.6 31 129-165 444-474 (506)
142 KOG1036 Mitotic spindle checkp 59.1 81 0.0018 28.8 8.7 37 28-72 60-96 (323)
143 KOG2321 WD40 repeat protein [G 59.0 1.2E+02 0.0026 30.3 10.4 118 215-380 130-260 (703)
144 COG4880 Secreted protein conta 58.3 1.8E+02 0.0039 28.1 14.4 78 121-207 379-459 (603)
145 KOG0315 G-protein beta subunit 56.8 1.5E+02 0.0032 26.5 12.2 171 150-377 18-196 (311)
146 PF07734 FBA_1: F-box associat 55.8 1.1E+02 0.0025 25.0 10.0 85 175-267 2-91 (164)
147 PF13859 BNR_3: BNR repeat-lik 55.6 1.7E+02 0.0038 27.0 14.3 186 122-333 2-217 (310)
148 KOG0322 G-protein beta subunit 54.2 42 0.0009 30.0 6.0 28 127-165 261-288 (323)
149 KOG1332 Vesicle coat complex C 51.6 1.8E+02 0.0038 25.9 12.4 52 322-388 243-297 (299)
150 KOG1332 Vesicle coat complex C 51.0 88 0.0019 27.8 7.4 85 180-292 176-278 (299)
151 PF06433 Me-amine-dh_H: Methyl 50.6 48 0.001 30.9 6.2 100 128-236 47-155 (342)
152 COG4946 Uncharacterized protei 48.8 2.7E+02 0.0059 27.3 18.8 188 144-385 106-302 (668)
153 PRK01742 tolB translocation pr 47.5 2.7E+02 0.0059 26.9 20.2 61 145-214 228-289 (429)
154 KOG0316 Conserved WD40 repeat- 47.1 1.7E+02 0.0036 26.0 8.4 41 317-359 125-166 (307)
155 KOG0272 U4/U6 small nuclear ri 46.7 2.7E+02 0.0059 26.7 11.9 143 171-359 306-453 (459)
156 KOG0296 Angio-associated migra 46.1 2.6E+02 0.0057 26.3 10.6 55 228-294 75-129 (399)
157 KOG0281 Beta-TrCP (transducin 43.8 2.8E+02 0.0061 26.0 10.2 82 197-294 340-421 (499)
158 PF13088 BNR_2: BNR repeat-lik 42.9 2.4E+02 0.0052 25.0 14.8 199 153-386 28-250 (275)
159 KOG2445 Nuclear pore complex c 42.7 2.8E+02 0.006 25.6 10.0 20 371-390 202-221 (361)
160 PF07433 DUF1513: Protein of u 42.3 1.1E+02 0.0024 28.1 7.2 93 268-389 2-95 (305)
161 COG4447 Uncharacterized protei 42.1 1.7E+02 0.0036 26.7 7.9 129 155-330 32-164 (339)
162 PF13570 PQQ_3: PQQ-like domai 40.7 78 0.0017 18.7 4.3 26 172-206 15-40 (40)
163 COG3386 Gluconolactonase [Carb 39.9 3.1E+02 0.0067 25.4 19.0 182 147-359 87-279 (307)
164 KOG0647 mRNA export protein (c 39.3 2.3E+02 0.0049 26.0 8.3 53 130-189 85-137 (347)
165 COG4447 Uncharacterized protei 38.8 3.1E+02 0.0067 25.0 13.3 259 31-355 53-322 (339)
166 TIGR03074 PQQ_membr_DH membran 36.8 5.4E+02 0.012 27.3 21.5 34 122-162 188-223 (764)
167 KOG4378 Nuclear protein COP1 [ 36.7 4.3E+02 0.0094 26.1 10.2 30 262-293 202-231 (673)
168 TIGR02658 TTQ_MADH_Hv methylam 35.9 3.8E+02 0.0083 25.3 20.1 58 97-159 77-142 (352)
169 KOG0291 WD40-repeat-containing 35.9 5.4E+02 0.012 27.0 18.6 219 96-377 286-507 (893)
170 PF15525 DUF4652: Domain of un 35.9 2.7E+02 0.0059 23.6 10.2 88 136-227 79-170 (200)
171 KOG2445 Nuclear pore complex c 35.0 3.4E+02 0.0073 25.1 8.8 109 103-215 96-219 (361)
172 KOG2321 WD40 repeat protein [G 34.7 2.4E+02 0.0052 28.3 8.3 57 179-251 146-204 (703)
173 PRK04043 tolB translocation pr 34.5 4.4E+02 0.0095 25.5 21.4 193 145-385 213-407 (419)
174 KOG0294 WD40 repeat-containing 34.2 1.2E+02 0.0027 27.8 6.0 44 325-380 30-73 (362)
175 KOG0646 WD40 repeat protein [G 32.5 4.5E+02 0.0098 25.6 9.6 18 277-294 283-300 (476)
176 PHA02579 7 baseplate wedge sub 32.4 6.2E+02 0.013 26.7 12.2 104 125-237 193-324 (1030)
177 KOG4649 PQQ (pyrrolo-quinoline 32.2 3.8E+02 0.0083 24.2 10.5 95 177-294 20-116 (354)
178 PTZ00420 coronin; Provisional 31.2 5.8E+02 0.013 26.0 13.4 25 128-154 225-249 (568)
179 TIGR03074 PQQ_membr_DH membran 31.1 6.7E+02 0.014 26.6 14.5 15 222-236 188-202 (764)
180 KOG0299 U3 snoRNP-associated p 31.0 5.1E+02 0.011 25.2 14.3 131 125-294 210-349 (479)
181 PF09910 DUF2139: Uncharacteri 30.4 4.4E+02 0.0095 24.3 10.4 95 128-235 117-220 (339)
182 PTZ00421 coronin; Provisional 29.7 5.7E+02 0.012 25.4 16.6 63 129-208 138-201 (493)
183 PLN02919 haloacid dehalogenase 29.1 8.3E+02 0.018 27.1 22.1 70 128-211 635-719 (1057)
184 COG2706 3-carboxymuconate cycl 28.9 4.9E+02 0.011 24.4 18.1 63 315-387 167-232 (346)
185 KOG0263 Transcription initiati 28.7 4.5E+02 0.0098 27.3 9.4 16 344-359 627-642 (707)
186 KOG2111 Uncharacterized conser 28.5 2.3E+02 0.0049 26.2 6.6 57 129-185 59-119 (346)
187 KOG0266 WD40 repeat-containing 26.7 6.1E+02 0.013 24.8 12.9 84 197-293 225-310 (456)
188 PF14781 BBS2_N: Ciliary BBSom 25.5 2.3E+02 0.0049 22.7 5.4 49 178-238 63-117 (136)
189 PF15525 DUF4652: Domain of un 24.5 4.4E+02 0.0096 22.4 9.3 81 82-165 73-160 (200)
190 KOG2111 Uncharacterized conser 24.4 5.8E+02 0.012 23.7 12.5 56 178-235 58-119 (346)
191 PF03022 MRJP: Major royal jel 23.7 5.6E+02 0.012 23.3 12.2 99 128-234 11-126 (287)
192 PF05262 Borrelia_P83: Borreli 22.6 6.2E+02 0.013 25.2 9.0 85 142-234 372-456 (489)
193 PF08662 eIF2A: Eukaryotic tra 22.6 4.7E+02 0.01 22.0 9.5 71 128-215 71-141 (194)
194 COG3823 Glutamine cyclotransfe 22.1 5.4E+02 0.012 22.5 8.4 99 123-236 50-148 (262)
195 PRK04043 tolB translocation pr 21.9 7.3E+02 0.016 24.0 18.6 104 98-214 214-318 (419)
196 KOG0286 G-protein beta subunit 21.0 6.6E+02 0.014 23.1 17.7 98 128-251 108-216 (343)
197 KOG0278 Serine/threonine kinas 20.8 6.2E+02 0.013 22.7 9.8 54 128-189 235-289 (334)
198 KOG0265 U5 snRNP-specific prot 20.5 6.8E+02 0.015 23.1 9.9 29 178-212 58-87 (338)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.8e-47 Score=374.84 Aligned_cols=252 Identities=21% Similarity=0.387 Sum_probs=229.7
Q ss_pred cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe
Q 016413 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (390)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~ 177 (390)
.+..||+.+++|..+++||.+|..+++++++++|||+||.+.....++++|+|||.+|+|..+++|+. +|..++++++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~R~~~~v~~l 379 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--KRSDFGVAVL 379 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--ccccceeEEE
Confidence 67777788888888889999999999999999999999999533457899999999999999999998 6999999999
Q ss_pred CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCC-CCCCcceEEeeeecc
Q 016413 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDG 256 (390)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~ 256 (390)
+|+||++||.++... ++++++|||.+++|+.+++|+.+|++|++++++++||++||.++.. +..++++||
T Consensus 380 ~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YD------ 450 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYD------ 450 (571)
T ss_pred CCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEc------
Confidence 999999999997654 8899999999999999999999999999999999999999998777 788888888
Q ss_pred ccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCC
Q 016413 257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKP 335 (390)
Q Consensus 257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~ 335 (390)
|.+++|+.+++|+.+|..+++++++++||++||+++.. .+..|++|| .+++|+.+++|+.+
T Consensus 451 -P~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~-----------------~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 451 -PETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS-----------------ALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred -CCCCceeecCCcccccccceEEEECCEEEEECCccCCC-----------------ccceEEEEcCCCCceeEcccCccc
Confidence 89999999999999999999999999999999998732 345699999 78999999999999
Q ss_pred CCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccC
Q 016413 336 NSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYR 387 (390)
Q Consensus 336 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 387 (390)
|... ++++.++++|++||+++.. +++++++|||++|+|..++.
T Consensus 513 rs~~--g~~~~~~~ly~vGG~~~~~-------~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 513 RSAV--GVVVLGGKLYAVGGFDGNN-------NLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cccc--cEEEECCEEEEEecccCcc-------ccceeEEcCCCCCceeeCCC
Confidence 8865 4589999999999988887 78999999999999999987
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=357.62 Aligned_cols=250 Identities=14% Similarity=0.185 Sum_probs=215.5
Q ss_pred hcccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE
Q 016413 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (390)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~ 176 (390)
..+++||+.+++|..+++||.+|..+++++++++|||+||.+.....++++++|||.+++|..+++|+. +|..+++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeEEE
Confidence 367899999999999999999999999999999999999986433456889999999999999999987 588999999
Q ss_pred eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCC---------------
Q 016413 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR--------------- 241 (390)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--------------- 241 (390)
++++||++||.++.. ..+++++|||.+++|+.+++||.+|..+++++++++|||+||.....
T Consensus 350 ~~g~IYviGG~~~~~---~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 IDDTIYAIGGQNGTN---VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred ECCEEEEECCcCCCC---CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 999999999986543 36889999999999999999999999999999999999999986421
Q ss_pred ---CCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEE
Q 016413 242 ---HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVY 318 (390)
Q Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (390)
..+.+ +.|||.+++|+.+++|+.+|..+++++++++||++||.++.. ...+.++
T Consensus 427 ~~~~~~~v-------e~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~----------------~~~~~ve 483 (557)
T PHA02713 427 DTHSSNKV-------IRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEK----------------NVKTCIF 483 (557)
T ss_pred cccccceE-------EEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCC----------------ccceeEE
Confidence 12233 344489999999999999999999999999999999986431 1234589
Q ss_pred eeC-CC-CCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeecc
Q 016413 319 MLD-DE-MKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHY 386 (390)
Q Consensus 319 ~yd-~~-~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 386 (390)
+|| .+ ++|+.+++||.+|..+ ++++++|+||++||+++.. ++++||+.+++|..+.
T Consensus 484 ~Ydp~~~~~W~~~~~m~~~r~~~--~~~~~~~~iyv~Gg~~~~~----------~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 484 RYNTNTYNGWELITTTESRLSAL--HTILHDNTIMMLHCYESYM----------LQDTFNVYTYEWNHIC 541 (557)
T ss_pred EecCCCCCCeeEccccCcccccc--eeEEECCEEEEEeeeccee----------ehhhcCcccccccchh
Confidence 999 66 6999999999988854 5689999999999997632 6999999999999875
No 3
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=9.9e-41 Score=324.63 Aligned_cols=319 Identities=14% Similarity=0.225 Sum_probs=244.1
Q ss_pred hccEEEEecCCCCCCCccccceeeee--ccCC----CceEeecCCCCCccccccceEEEecCC----Cch--hHHHhhhc
Q 016413 31 IADFMWASSSSSFSSSSAHLSVASNW--ALEK----SGVVVIPHVNATKIDRQRESVAVIDKK----GQD--AERFLSAT 98 (390)
Q Consensus 31 ~~~~l~~~GG~~~~~~~~~~~~~~~~--d~~~----~~W~~l~~~~~~p~~r~~~~~~~~~~~----~~~--~~~~~~~~ 98 (390)
.+++|+.|+|.+. ..++.+..| +|.+ ++|..+.++...|.+|..|+++++++. |.. .......+
T Consensus 119 ~~~~ivgf~G~~~----~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 194 (470)
T PLN02193 119 QGGKIVGFHGRST----DVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKH 194 (470)
T ss_pred cCCeEEEEeccCC----CcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCc
Confidence 5899999999832 246666566 6544 799999987666667999999988766 221 11123347
Q ss_pred ccccccCCCCeEECCC---CCC-cCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC-CCCCcceE
Q 016413 99 FADLPAPDLEWEQMPS---APV-PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLG 173 (390)
Q Consensus 99 ~~~~~~~~~~W~~~~~---~~~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~~~r~~~~ 173 (390)
+++||+.+++|+.+++ +|. +|..|++++++++||||||.+... .++++++||+.+++|+++++++. |.+|..|+
T Consensus 195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 9999999999998865 333 256888999999999999987644 46899999999999999988732 34799999
Q ss_pred EEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC---CCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEE
Q 016413 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (390)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (390)
+++.+++|||+||.+... .++++++||+.+++|+.+++ +|.+|..|++++++++|||+||..+.. .+++++||
T Consensus 274 ~~~~~~~iYv~GG~~~~~---~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~~dv~~yD 349 (470)
T PLN02193 274 MAADEENVYVFGGVSATA---RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-VDDVHYYD 349 (470)
T ss_pred EEEECCEEEEECCCCCCC---CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-cCceEEEE
Confidence 999999999999987643 37899999999999999874 678899999999999999999986432 35556665
Q ss_pred eeeeccccccCCeEEccCC---CCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCe
Q 016413 251 IAVKDGKALEKAWRTEIPI---PRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW 326 (390)
Q Consensus 251 ~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W 326 (390)
+.+++|+.++++ |.+|..+++++++++|||+||...... ........+++++++|| .+++|
T Consensus 350 -------~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 350 -------PVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDP--------LAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred -------CCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCcc--------ccccCccceeccEEEEEcCcCEE
Confidence 789999998654 788888899999999999999864210 00011224678999999 78899
Q ss_pred EECCCC------CCCCCcceeEEEEEC--CEEEEEcCCCCCCCcceeeEEeeeEEEeecCc
Q 016413 327 KVLPPM------PKPNSHIECAWVIVN--NSIIITGGTTEKHPMTKRMILVGEVFQFHLDS 379 (390)
Q Consensus 327 ~~~~~~------~~~~~~~~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 379 (390)
+.++.+ |.+|..+.++++.+. +.|+++||.+..+. +++|+|+|++++
T Consensus 415 ~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~------~~~D~~~~~~~~ 469 (470)
T PLN02193 415 ERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTND------RFDDLFFYGIDS 469 (470)
T ss_pred EEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccc------cccceEEEecCC
Confidence 998743 455655543333333 45999999986654 789999998765
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9.9e-41 Score=313.40 Aligned_cols=299 Identities=17% Similarity=0.283 Sum_probs=222.9
Q ss_pred CCCceEeecCCCC-CccccccceEEEecCC-----Cchh-HHHhhhcccccccCCCCeEECCCCC-CcCC---CceEEEE
Q 016413 59 EKSGVVVIPHVNA-TKIDRQRESVAVIDKK-----GQDA-ERFLSATFADLPAPDLEWEQMPSAP-VPRL---DGAAIQI 127 (390)
Q Consensus 59 ~~~~W~~l~~~~~-~p~~r~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~W~~~~~~~-~~R~---~~~~~~~ 127 (390)
...+|.+++.... .|.+|..|+++++++. |... ......+++.||+.+++|+.+++++ .||. +|+++++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 5678999987432 3455999999888766 2211 1223348999999999999998764 3443 6888999
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC---CCCCcceEEEEeCCEEEEEeceeCCCC---CCCCceEEE
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHSHLGVVSDGRYIYIVSGQYGPQC---RGPTSRTFV 201 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~v~~ 201 (390)
+++||||||.+... .++++++||+.+++|+.+++|+. |.+|..|++++.+++|||+||.+.... ...++++++
T Consensus 85 ~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 99999999987644 46789999999999999987732 447899999999999999999864321 123578999
Q ss_pred EECCCCCeEeCCCCC---CCCCCceEEEECCEEEEEccCCCC--------CCCCCcceEEeeeeccccccCCeEEccC--
Q 016413 202 LDSETRKWDSIPPLP---SPRYSPATQLWRGRLHVMGGSKEN--------RHTPGLEHWSIAVKDGKALEKAWRTEIP-- 268 (390)
Q Consensus 202 yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~~~~~~~~~~~~~~W~~~~~-- 268 (390)
||+++++|+.++++. .+|.+|++++++++|||+||.... ...+.+++|| +.+++|+.+..
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd-------~~~~~W~~~~~~g 236 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFD-------PASGKWTEVETTG 236 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEE-------cCCCcEEeccccC
Confidence 999999999998764 789999999999999999997421 1123344444 79999999864
Q ss_pred -CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC-----CCCCCCCccee
Q 016413 269 -IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP-----PMPKPNSHIEC 341 (390)
Q Consensus 269 -~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~-----~~~~~~~~~~~ 341 (390)
+|.+|..+++++++++|||+||...... .........++++|+|| .+++|+.+. ++|.++..+++
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~ 308 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDL--------KGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTT 308 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCcc--------ccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccc
Confidence 6888888899999999999999743210 00011234567899999 789999886 34444443444
Q ss_pred EEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCc
Q 016413 342 AWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDS 379 (390)
Q Consensus 342 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 379 (390)
+.+..+++|||+||+++..+ .++|+|+|++.+
T Consensus 309 ~~v~~~~~~~~~gG~~~~~~------~~~~~~~~~~~~ 340 (341)
T PLN02153 309 ATVYGKNGLLMHGGKLPTNE------RTDDLYFYAVNS 340 (341)
T ss_pred cccCCcceEEEEcCcCCCCc------cccceEEEeccc
Confidence 43444568999999987654 678999998653
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.9e-41 Score=331.39 Aligned_cols=276 Identities=20% Similarity=0.321 Sum_probs=244.7
Q ss_pred hhccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC-----Cch-hHHHhhhcccccc
Q 016413 30 LIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK-----GQD-AERFLSATFADLP 103 (390)
Q Consensus 30 ~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~ 103 (390)
...+.||++||.... ....+.+++|||.+++|..+++|+.+ |..++++++++. |.+ ....++ .+++||
T Consensus 282 ~~~~~l~~vGG~~~~--~~~~~~ve~yd~~~~~w~~~a~m~~~---r~~~~~~~~~~~lYv~GG~~~~~~~l~-~ve~YD 355 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQ--GQSLRSVECYDPKTNEWSSLAPMPSP---RCRVGVAVLNGKLYVVGGYDSGSDRLS-SVERYD 355 (571)
T ss_pred CCCCeEEEECCCCCC--CcccceeEEecCCcCcEeecCCCCcc---cccccEEEECCEEEEEccccCCCcccc-eEEEec
Confidence 456889999999332 56788999999999999999999988 999999999877 344 233444 999999
Q ss_pred cCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEE
Q 016413 104 APDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYI 183 (390)
Q Consensus 104 ~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv 183 (390)
+..++|..+++|..+|..++++++++.||++||.++... ++++|+|||.+++|+.+++|+. +|.++++++.+++||+
T Consensus 356 ~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 356 PRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYI 432 (571)
T ss_pred CCCCceeccCCccCccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEE
Confidence 999999999999999999999999999999999997664 6889999999999999999998 6999999999999999
Q ss_pred EeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCe
Q 016413 184 VSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAW 263 (390)
Q Consensus 184 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W 263 (390)
+||.++.. ..++++++|||.+++|+.+++|+.+|.++++++++++||++||+++......+++|| |.+++|
T Consensus 433 ~GG~~~~~--~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~yd-------p~~~~W 503 (571)
T KOG4441|consen 433 IGGGDGSS--NCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYD-------PETNQW 503 (571)
T ss_pred EcCcCCCc--cccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEc-------CCCCce
Confidence 99998876 248999999999999999999999999999999999999999998855556667776 899999
Q ss_pred EEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcce
Q 016413 264 RTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIE 340 (390)
Q Consensus 264 ~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~ 340 (390)
+.+++|+.+|...++++++++||++||+++. .+++.|..|| .+++|+..+++...+...+
T Consensus 504 ~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~-----------------~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~ 564 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN-----------------NNLNTVECYDPETDTWTEVTEPESGRGGAG 564 (571)
T ss_pred eEcccCccccccccEEEECCEEEEEecccCc-----------------cccceeEEcCCCCCceeeCCCccccccCcc
Confidence 9999999999999999999999999998876 3678899999 7899999998555555443
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.5e-41 Score=330.37 Aligned_cols=263 Identities=13% Similarity=0.224 Sum_probs=216.3
Q ss_pred EEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC----Cc-hhHHHhhhcccccccCCCC
Q 016413 34 FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK----GQ-DAERFLSATFADLPAPDLE 108 (390)
Q Consensus 34 ~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~ 108 (390)
.|++.||. . ......+++|||.+++|..+++|+.+ |..++++++++. |. ........++++||+.+++
T Consensus 259 ~l~~~~g~-~---~~~~~~v~~yd~~~~~W~~l~~mp~~---r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~ 331 (557)
T PHA02713 259 CLVCHDTK-Y---NVCNPCILVYNINTMEYSVISTIPNH---IINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI 331 (557)
T ss_pred EEEEecCc-c---ccCCCCEEEEeCCCCeEEECCCCCcc---ccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe
Confidence 46666653 1 11234789999999999999999887 888888887766 22 1111123489999999999
Q ss_pred eEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEecee
Q 016413 109 WEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188 (390)
Q Consensus 109 W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~ 188 (390)
|..+++||.+|..+++++++++|||+||.++.. .++++++|||.+++|+.+++||. +|..+++++++++||++||.+
T Consensus 332 W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~--~r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 332 HVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPI--ALSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred EeeCCCCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCc--ccccccEEEECCEEEEEeCCC
Confidence 999999999999999999999999999987544 46789999999999999999998 578889999999999999986
Q ss_pred CCCC---------------CCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCC-CCCcceEEee
Q 016413 189 GPQC---------------RGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRH-TPGLEHWSIA 252 (390)
Q Consensus 189 ~~~~---------------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~~~ 252 (390)
+... ....+.+++|||++++|+.+++|+.+|..+++++++++|||+||.++... ...+++||
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Yd-- 486 (557)
T PHA02713 409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYN-- 486 (557)
T ss_pred cccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEec--
Confidence 4321 01257899999999999999999999999999999999999999864322 22344554
Q ss_pred eecccccc-CCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC
Q 016413 253 VKDGKALE-KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP 330 (390)
Q Consensus 253 ~~~~~~~~-~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~ 330 (390)
|.+ ++|+.+++||.+|..+++++++++||++||.++. ..+++|| .+++|+.++
T Consensus 487 -----p~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~--------------------~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 487 -----TNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESY--------------------MLQDTFNVYTYEWNHIC 541 (557)
T ss_pred -----CCCCCCeeEccccCcccccceeEEECCEEEEEeeecce--------------------eehhhcCcccccccchh
Confidence 898 8999999999999999999999999999998752 2589999 789999987
Q ss_pred CCC
Q 016413 331 PMP 333 (390)
Q Consensus 331 ~~~ 333 (390)
+-.
T Consensus 542 ~~~ 544 (557)
T PHA02713 542 HQH 544 (557)
T ss_pred hhc
Confidence 543
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.6e-39 Score=302.08 Aligned_cols=262 Identities=18% Similarity=0.259 Sum_probs=201.3
Q ss_pred cCCCCeEECCC----CCCcCCCceEEEECCEEEEEecCCCC-CCCCCeEEEEeCCCCceeecCCCCC-CCC-CcceEEEE
Q 016413 104 APDLEWEQMPS----APVPRLDGAAIQIKNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMPK-DMA-HSHLGVVS 176 (390)
Q Consensus 104 ~~~~~W~~~~~----~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~l~~-~~~-r~~~~~~~ 176 (390)
+.+.+|.++.+ +|.||..|++++++++|||+||.... ....+++++||+.+++|+.+++++. |.. +..+++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35668999976 78999999999999999999998643 3345789999999999999887753 322 34788899
Q ss_pred eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCC-----CCCCCCceEEEECCEEEEEccCCCCCC------CCC
Q 016413 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-----PSPRYSPATQLWRGRLHVMGGSKENRH------TPG 245 (390)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~ 245 (390)
++++||||||.+... .++++++||+++++|+.+++| |.+|..|++++++++|||+||...... ..+
T Consensus 84 ~~~~iyv~GG~~~~~---~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 84 VGTKLYIFGGRDEKR---EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred ECCEEEEECCCCCCC---ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 999999999986543 368999999999999999877 889999999999999999999864321 123
Q ss_pred cceEEeeeeccccccCCeEEccCC---CCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-
Q 016413 246 LEHWSIAVKDGKALEKAWRTEIPI---PRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD- 321 (390)
Q Consensus 246 ~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd- 321 (390)
+++|| +.+++|+.++++ |.+|..+++++++++|||+||....... . . .....++++++||
T Consensus 161 v~~yd-------~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~--g-----G--~~~~~~~~v~~yd~ 224 (341)
T PLN02153 161 IEAYN-------IADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILP--G-----G--KSDYESNAVQFFDP 224 (341)
T ss_pred EEEEE-------CCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccccccc--C-----C--ccceecCceEEEEc
Confidence 33443 799999998765 3678888899999999999997532100 0 0 0012257899999
Q ss_pred CCCCeEECCC---CCCCCCcceeEEEEECCEEEEEcCCCCCCC--cceeeEEeeeEEEeecCccceeecc
Q 016413 322 DEMKWKVLPP---MPKPNSHIECAWVIVNNSIIITGGTTEKHP--MTKRMILVGEVFQFHLDSLVIIYHY 386 (390)
Q Consensus 322 ~~~~W~~~~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~v~ 386 (390)
.+++|+.++. +|.+|.. +++++++++||||||...... +.......+++|+||+++++|+.+.
T Consensus 225 ~~~~W~~~~~~g~~P~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 225 ASGKWTEVETTGAKPSARSV--FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred CCCcEEeccccCCCCCCcce--eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 7889999874 5666654 456889999999999753210 0011125679999999999999885
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.6e-39 Score=312.38 Aligned_cols=260 Identities=20% Similarity=0.277 Sum_probs=208.0
Q ss_pred ccccccCC----CCeEECCC---CCCcCCCceEEEECCEEEEEecCCCCC-CCCCeEEEEeCCCCceeecCCCC-CCC-C
Q 016413 99 FADLPAPD----LEWEQMPS---APVPRLDGAAIQIKNLFYVFAGYGSLD-YVHSHVDVYNFTDNKWVDRFDMP-KDM-A 168 (390)
Q Consensus 99 ~~~~~~~~----~~W~~~~~---~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~~~l~-~~~-~ 168 (390)
++.+++.+ ++|.++++ +|.||..|++++++++|||+||..... ...+++++||+.+++|+.++.+. .|. +
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~ 218 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS 218 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence 44445433 79999876 688999999999999999999986433 24468999999999999876542 232 3
Q ss_pred CcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCC---CCCCCCceEEEECCEEEEEccCCCCCCCCC
Q 016413 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL---PSPRYSPATQLWRGRLHVMGGSKENRHTPG 245 (390)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 245 (390)
|..+++++++++||||||.+... .++++++||+.+++|++++++ |.+|+.|++++++++|||+||.........
T Consensus 219 ~~~~~~v~~~~~lYvfGG~~~~~---~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~ 295 (470)
T PLN02193 219 CLGVRMVSIGSTLYVFGGRDASR---QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKT 295 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCC---CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcce
Confidence 56888999999999999987543 478999999999999999987 889999999999999999999876555555
Q ss_pred cceEEeeeeccccccCCeEEccC---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-
Q 016413 246 LEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD- 321 (390)
Q Consensus 246 ~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd- 321 (390)
+++|| +.+++|+.+++ +|.+|..+++++++++||++||.++. .++++++||
T Consensus 296 ~~~yd-------~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~------------------~~~dv~~yD~ 350 (470)
T PLN02193 296 LDSYN-------IVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC------------------EVDDVHYYDP 350 (470)
T ss_pred EEEEE-------CCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC------------------ccCceEEEEC
Confidence 66666 68999999864 66778888999999999999997642 246799999
Q ss_pred CCCCeEECCCC---CCCCCcceeEEEEECCEEEEEcCCCCCCC--cceeeEEeeeEEEeecCccceeeccCC
Q 016413 322 DEMKWKVLPPM---PKPNSHIECAWVIVNNSIIITGGTTEKHP--MTKRMILVGEVFQFHLDSLVIIYHYRP 388 (390)
Q Consensus 322 ~~~~W~~~~~~---~~~~~~~~~~~~~~~~~l~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~v~~~ 388 (390)
.+++|+.++.+ |.+|.. +++++++++|||+||...... ........+++++||+++++|+.+..+
T Consensus 351 ~t~~W~~~~~~g~~P~~R~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~ 420 (470)
T PLN02193 351 VQDKWTQVETFGVRPSERSV--FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKF 420 (470)
T ss_pred CCCEEEEeccCCCCCCCcce--eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccC
Confidence 78899999755 666654 456889999999999864221 111122678999999999999998754
No 9
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.9e-39 Score=320.58 Aligned_cols=257 Identities=20% Similarity=0.306 Sum_probs=216.2
Q ss_pred cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe
Q 016413 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (390)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~ 177 (390)
.+..|+...++|..+++++. +..+++++++++|||+||.+......+++++||+.+++|..+++|+. +|..+++++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~R~~~~~~~~ 341 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY--PRKNPGVTVF 341 (534)
T ss_pred eeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc--ccccceEEEE
Confidence 45567888889998877664 34578899999999999998666566789999999999999999987 5889999999
Q ss_pred CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCC-CCCCCcceEEeeeecc
Q 016413 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN-RHTPGLEHWSIAVKDG 256 (390)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~~~~~~~ 256 (390)
+++||++||.+.. ...+++++||+.+++|+.+++||.+|..+++++++++|||+||.... ...+.+++||
T Consensus 342 ~~~lyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd------ 412 (534)
T PHA03098 342 NNRIYVIGGIYNS---ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS------ 412 (534)
T ss_pred CCEEEEEeCCCCC---EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe------
Confidence 9999999998743 34789999999999999999999999999999999999999997432 2345556665
Q ss_pred ccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCC
Q 016413 257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKP 335 (390)
Q Consensus 257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~ 335 (390)
|.+++|+.++++|.+|..+++++++++|||+||.+.... ....+.+++|| .+++|+.+++++.|
T Consensus 413 -~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~~~~W~~~~~~~~~ 477 (534)
T PHA03098 413 -LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN--------------IKVYNIVESYNPVTNKWTELSSLNFP 477 (534)
T ss_pred -CCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC--------------CcccceEEEecCCCCceeeCCCCCcc
Confidence 789999999999999999999999999999999764321 01245699999 78899999999988
Q ss_pred CCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCCC
Q 016413 336 NSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPPK 390 (390)
Q Consensus 336 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P~ 390 (390)
|..+ +++..+++|||+||.+... ..+++++||+++++|..++.+|+
T Consensus 478 r~~~--~~~~~~~~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 478 RINA--SLCIFNNKIYVVGGDKYEY-------YINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred cccc--eEEEECCEEEEEcCCcCCc-------ccceeEEEeCCCCEEEecCCCcc
Confidence 8765 4477899999999987654 45689999999999999999885
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.2e-39 Score=301.75 Aligned_cols=293 Identities=17% Similarity=0.210 Sum_probs=209.5
Q ss_pred ecCCCCCccccccceEEEecCCCchhHHHhhhccccccc--CCCCeEECCCCC-CcCCCceEEEECCEEEEEecCCCCC-
Q 016413 66 IPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPA--PDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD- 141 (390)
Q Consensus 66 l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~-~~R~~~~~~~~~~~lyv~GG~~~~~- 141 (390)
+|+|+.+ |...+++++++.-+.........++.||+ .+++|..+++|| .+|..+++++++++|||+||.....
T Consensus 1 ~~~lp~~---~~~~~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~ 77 (346)
T TIGR03547 1 LPDLPVG---FKNGTGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANS 77 (346)
T ss_pred CCCCCcc---ccCceEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCC
Confidence 3555555 77777777766622222222347888885 578999999999 5899999999999999999985422
Q ss_pred ----CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE-EeCCEEEEEeceeCCCC------------------------
Q 016413 142 ----YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV-SDGRYIYIVSGQYGPQC------------------------ 192 (390)
Q Consensus 142 ----~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~------------------------ 192 (390)
..++++|+||+.+++|+.++. +.|.+|.+++++ +++++||++||.+....
T Consensus 78 ~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 78 EGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred CCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 246789999999999999974 334467677665 78999999999863210
Q ss_pred -------CCCCceEEEEECCCCCeEeCCCCCC-CCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeE
Q 016413 193 -------RGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR 264 (390)
Q Consensus 193 -------~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 264 (390)
....+++++||+.+++|+.+++||. +|..+++++++++|||+||...... ...+. ..|++++.+++|+
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~---~~y~~~~~~~~W~ 232 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL-RTAEV---KQYLFTGGKLEWN 232 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc-cchhe---EEEEecCCCceee
Confidence 0013789999999999999999996 6889999999999999999754321 12222 2344557889999
Q ss_pred EccCCCCCC-------CceeEEEECCEEEEEcCCCCCCCCC--CCCCccccccccceecCcEEeeC-CCCCeEECCCCCC
Q 016413 265 TEIPIPRGG-------PHRACFVFNDRLFVVGGQEGDFMAK--PGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPK 334 (390)
Q Consensus 265 ~~~~~p~~~-------~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~ 334 (390)
.+++||.+| ..+.+++++++|||+||.+...... ..+....... ...+..+++|| ++++|+.+++||.
T Consensus 233 ~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 233 KLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEG--LIKAWSSEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred ecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCC--CCceeEeeEEEecCCcccccCCCCC
Confidence 999987654 2344788999999999986321000 0000000000 00123578899 7889999999999
Q ss_pred CCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEee
Q 016413 335 PNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFH 376 (390)
Q Consensus 335 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd 376 (390)
+|.. +++++++++|||+||.+.... .+++|+.|.
T Consensus 311 ~~~~--~~~~~~~~~iyv~GG~~~~~~------~~~~v~~~~ 344 (346)
T TIGR03547 311 GLAY--GVSVSWNNGVLLIGGENSGGK------AVTDVYLLS 344 (346)
T ss_pred Ccee--eEEEEcCCEEEEEeccCCCCC------EeeeEEEEE
Confidence 8764 456889999999999976654 677887764
No 11
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.3e-38 Score=300.60 Aligned_cols=305 Identities=16% Similarity=0.158 Sum_probs=219.0
Q ss_pred ceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccC--CCCeEECCCCC-CcCCCceEEEECCEEEEEecCC
Q 016413 62 GVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYG 138 (390)
Q Consensus 62 ~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~-~~R~~~~~~~~~~~lyv~GG~~ 138 (390)
.+..+++|+.+ |...+++++++.-+.........++.||.. +++|.+++++| .+|..+++++++++|||+||..
T Consensus 18 ~~~~l~~lP~~---~~~~~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~ 94 (376)
T PRK14131 18 NAEQLPDLPVP---FKNGTGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIG 94 (376)
T ss_pred ecccCCCCCcC---ccCCeEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCC
Confidence 46678888877 777777777665222111122356777765 47899999998 5899999999999999999986
Q ss_pred C-C----CCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCC---------------------
Q 016413 139 S-L----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQ--------------------- 191 (390)
Q Consensus 139 ~-~----~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~--------------------- 191 (390)
. . ...++++|+||+.+++|+.++++ .|.++..+++++ .+++||++||.+...
T Consensus 95 ~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i 173 (376)
T PRK14131 95 KTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI 173 (376)
T ss_pred CCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Confidence 4 1 12467899999999999999863 244566677666 899999999975310
Q ss_pred ----------CCCCCceEEEEECCCCCeEeCCCCCC-CCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeecccccc
Q 016413 192 ----------CRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE 260 (390)
Q Consensus 192 ----------~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 260 (390)
.....+++++||+.+++|+.+++||. +|..++++.++++|||+||..... ....+.|+ +++++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~---~~~~~~~ 249 (376)
T PRK14131 174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQ---GKFTGNN 249 (376)
T ss_pred HHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCC-cCChhheE---EEecCCC
Confidence 00124789999999999999999996 788889999999999999975432 12333333 3445789
Q ss_pred CCeEEccCCCCCCC--------ceeEEEECCEEEEEcCCCCCCCC--CCCCCccccccccceecCcEEeeC-CCCCeEEC
Q 016413 261 KAWRTEIPIPRGGP--------HRACFVFNDRLFVVGGQEGDFMA--KPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL 329 (390)
Q Consensus 261 ~~W~~~~~~p~~~~--------~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~ 329 (390)
++|+.+++||.+|. ++.+++++++|||+||.+..... ..++....... .. -...+++|| .+++|+.+
T Consensus 250 ~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~-~~-~~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 250 LKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEG-LK-KSWSDEIYALVNGKWQKV 327 (376)
T ss_pred cceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccC-Cc-ceeehheEEecCCccccc
Confidence 99999999876653 22357889999999997632100 00000000000 00 012477899 78899999
Q ss_pred CCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceee
Q 016413 330 PPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIY 384 (390)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 384 (390)
++||.||..+ +++.++++|||+||...... .+++|++|+++.+.+..
T Consensus 328 ~~lp~~r~~~--~av~~~~~iyv~GG~~~~~~------~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 328 GELPQGLAYG--VSVSWNNGVLLIGGETAGGK------AVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CcCCCCccce--EEEEeCCEEEEEcCCCCCCc------EeeeEEEEEEcCCEEEE
Confidence 9999998764 46899999999999876543 67899999999988764
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=6.2e-38 Score=292.40 Aligned_cols=247 Identities=18% Similarity=0.272 Sum_probs=183.3
Q ss_pred cccccc-cCC-CCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCce----eecCCCCCCCCCcc
Q 016413 98 TFADLP-APD-LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW----VDRFDMPKDMAHSH 171 (390)
Q Consensus 98 ~~~~~~-~~~-~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~~~~l~~~~~r~~ 171 (390)
+++.++ +.. .+|..+++||.+|..+++++++++||++||.+... .++++++||+.+++| +.+++||. +|..
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~--~~~~ 116 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPF--TFEN 116 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCc--CccC
Confidence 555553 322 37999999999999888999999999999987644 468899999999998 67888887 5778
Q ss_pred eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCC-CCCCceEEEECCEEEEEccCCCCCCCCCcceEE
Q 016413 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (390)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (390)
+++++++++|||+||.... ...+++++||+.+++|+++++||. +|..+++++++++|||+||...... .++++||
T Consensus 117 ~~~~~~~~~iYv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~-~~~~~yd 192 (323)
T TIGR03548 117 GSACYKDGTLYVGGGNRNG---KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAY-TDGYKYS 192 (323)
T ss_pred ceEEEECCEEEEEeCcCCC---ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccc-cceEEEe
Confidence 8999999999999997543 237899999999999999999984 7899999999999999999864322 2334444
Q ss_pred eeeeccccccCCeEEccCC-----CCCCCcee-EEEECCEEEEEcCCCCCCCCCCCC--------------Ccc-ccccc
Q 016413 251 IAVKDGKALEKAWRTEIPI-----PRGGPHRA-CFVFNDRLFVVGGQEGDFMAKPGS--------------PIF-KCSRR 309 (390)
Q Consensus 251 ~~~~~~~~~~~~W~~~~~~-----p~~~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~--------------~~~-~~~~~ 309 (390)
|.+++|+.++++ |+.+..++ +++.+++|||+||.+.....+... ..+ .....
T Consensus 193 -------~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
T TIGR03548 193 -------PKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPE 265 (323)
T ss_pred -------cCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCcc
Confidence 799999999765 33333333 445579999999986421000000 000 00001
Q ss_pred cceecCcEEeeC-CCCCeEECCCCC-CCCCcceeEEEEECCEEEEEcCCCCCC
Q 016413 310 HEVVYGDVYMLD-DEMKWKVLPPMP-KPNSHIECAWVIVNNSIIITGGTTEKH 360 (390)
Q Consensus 310 ~~~~~~~v~~yd-~~~~W~~~~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~ 360 (390)
+..+.+++++|| .+++|+.++++| .+|.. ++++.++++||++||.....
T Consensus 266 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~--~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 266 WYNWNRKILIYNVRTGKWKSIGNSPFFARCG--AALLLTGNNIFSINGELKPG 316 (323)
T ss_pred ccCcCceEEEEECCCCeeeEcccccccccCc--hheEEECCEEEEEeccccCC
Confidence 112457899999 788999999887 45554 55689999999999986554
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=8.6e-37 Score=297.81 Aligned_cols=210 Identities=18% Similarity=0.323 Sum_probs=181.8
Q ss_pred EEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEE
Q 016413 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (390)
Q Consensus 124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 203 (390)
++.+++.||++||.+... ..+++++|||.+++|..+++|+. +|..+++++++++||++||.++ .+.+++||
T Consensus 267 ~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~~m~~--~r~~~~~v~~~~~iYviGG~~~------~~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIPPMNS--PRLYASGVPANNKLYVVGGLPN------PTSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECCCCCc--hhhcceEEEECCEEEEECCcCC------CCceEEEE
Confidence 455899999999986543 46789999999999999999987 5778888999999999999753 25689999
Q ss_pred CCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECC
Q 016413 204 SETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283 (390)
Q Consensus 204 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 283 (390)
+.+++|+.+++||.+|..+++++++++|||+||.... ...+++|| |.+++|+.+++||.+|..++++++++
T Consensus 338 p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~yd-------p~~~~W~~~~~m~~~r~~~~~~~~~~ 408 (480)
T PHA02790 338 HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLL-------PNHDQWQFGPSTYYPHYKSCALVFGR 408 (480)
T ss_pred CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEe-------CCCCEEEeCCCCCCccccceEEEECC
Confidence 9999999999999999999999999999999997543 24455665 89999999999999999899999999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCc
Q 016413 284 RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM 362 (390)
Q Consensus 284 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~ 362 (390)
+||++||. +++|| .+++|+.+++|+.||..+ ++++++|+||++||.++..
T Consensus 409 ~IYv~GG~-------------------------~e~ydp~~~~W~~~~~m~~~r~~~--~~~v~~~~IYviGG~~~~~-- 459 (480)
T PHA02790 409 RLFLVGRN-------------------------AEFYCESSNTWTLIDDPIYPRDNP--ELIIVDNKLLLIGGFYRGS-- 459 (480)
T ss_pred EEEEECCc-------------------------eEEecCCCCcEeEcCCCCCCcccc--EEEEECCEEEEECCcCCCc--
Confidence 99999983 57799 788999999999988765 4589999999999987543
Q ss_pred ceeeEEeeeEEEeecCccceeec
Q 016413 363 TKRMILVGEVFQFHLDSLVIIYH 385 (390)
Q Consensus 363 ~~~~~~~~~v~~yd~~~~~W~~v 385 (390)
..+.+++|||++++|+..
T Consensus 460 -----~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 460 -----YIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -----ccceEEEEECCCCeEEec
Confidence 456899999999999864
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.3e-36 Score=283.65 Aligned_cols=250 Identities=18% Similarity=0.271 Sum_probs=190.8
Q ss_pred CCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeC--CCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeC
Q 016413 112 MPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNF--TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG 189 (390)
Q Consensus 112 ~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~ 189 (390)
+++||.+|..+++++++++|||+||... +++++||+ .+++|..+++||.. +|..+++++++++|||+||...
T Consensus 1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~R~~~~~~~~~~~iYv~GG~~~ 74 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIADFPGG-PRNQAVAAAIDGKLYVFGGIGK 74 (346)
T ss_pred CCCCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECCCCCCC-CcccceEEEECCEEEEEeCCCC
Confidence 4789999999999899999999999743 56899996 67899999999842 5888999999999999999854
Q ss_pred CC---CCCCCceEEEEECCCCCeEeCC-CCCCCCCCceEE-EECCEEEEEccCCCCC-----------------------
Q 016413 190 PQ---CRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQ-LWRGRLHVMGGSKENR----------------------- 241 (390)
Q Consensus 190 ~~---~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~~~~iyv~GG~~~~~----------------------- 241 (390)
.. ....++++++||+.+++|+.++ ++|.+|.+++++ +++++||++||.....
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA 154 (346)
T ss_pred CCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence 22 1124689999999999999997 567778778776 7899999999986321
Q ss_pred -----------CCCCcceEEeeeeccccccCCeEEccCCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccc
Q 016413 242 -----------HTPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRR 309 (390)
Q Consensus 242 -----------~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 309 (390)
..+.+++| ||.+++|+.+++||. +|..+++++++++|||+||.....
T Consensus 155 ~~~~~~~~~~~~~~~v~~Y-------Dp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~-------------- 213 (346)
T TIGR03547 155 AYFSQPPEDYFWNKNVLSY-------DPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPG-------------- 213 (346)
T ss_pred HHhCCChhHcCccceEEEE-------ECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCC--------------
Confidence 01233444 489999999999985 678888899999999999975321
Q ss_pred cceecCcEEeeC---CCCCeEECCCCCCCCCc-----ceeEEEEECCEEEEEcCCCCCCCc--------c-e-eeEEeee
Q 016413 310 HEVVYGDVYMLD---DEMKWKVLPPMPKPNSH-----IECAWVIVNNSIIITGGTTEKHPM--------T-K-RMILVGE 371 (390)
Q Consensus 310 ~~~~~~~v~~yd---~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~l~v~GG~~~~~~~--------~-~-~~~~~~~ 371 (390)
....+++.|| .+++|+.+++||.||.. ..+++++++++|||+||.+..... . . ....+..
T Consensus 214 --~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
T TIGR03547 214 --LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWS 291 (346)
T ss_pred --ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeE
Confidence 1123455554 35699999999987632 244467899999999998632110 0 0 0002346
Q ss_pred EEEeecCccceeeccCCCC
Q 016413 372 VFQFHLDSLVIIYHYRPPK 390 (390)
Q Consensus 372 v~~yd~~~~~W~~v~~~P~ 390 (390)
+++||+++++|+.++.+|.
T Consensus 292 ~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 292 SEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred eeEEEecCCcccccCCCCC
Confidence 8999999999999999884
No 15
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=9.4e-37 Score=257.77 Aligned_cols=284 Identities=18% Similarity=0.270 Sum_probs=217.9
Q ss_pred HHHHHHhhccEEEEecCCCCCCCccc--cceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccc
Q 016413 24 GLLGAALIADFMWASSSSSFSSSSAH--LSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFAD 101 (390)
Q Consensus 24 ~~~~~~~~~~~l~~~GG~~~~~~~~~--~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (390)
.-|+++.++++||.|||+-.|+.-.. .=+++.++..+-+|..+|+--.. ..+.
T Consensus 15 VNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~k------------------------a~i~- 69 (392)
T KOG4693|consen 15 VNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITK------------------------ATIE- 69 (392)
T ss_pred ccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCccccc------------------------cccc-
Confidence 35899999999999999733311111 12577788788888888772111 0110
Q ss_pred cccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCC-CCCCCCcceEEEEeCCE
Q 016413 102 LPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRY 180 (390)
Q Consensus 102 ~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l-~~~~~r~~~~~~~~~~~ 180 (390)
.+.+..|..|.+|+++.+++++||.||++..+...+-+++|||++++|....-- -.|.+|.+|+++++++.
T Consensus 70 --------~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~ 141 (392)
T KOG4693|consen 70 --------SPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQ 141 (392)
T ss_pred --------CCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcE
Confidence 122346888999999999999999999998888888999999999999874321 11337999999999999
Q ss_pred EEEEeceeCCCCCCCCceEEEEECCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCCCCC--CCCCcceEEeeeec
Q 016413 181 IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAVKD 255 (390)
Q Consensus 181 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~~~~ 255 (390)
+|||||+..... .-.+++..+|..+.+|+.+. ..|.=|..|+++++++.+|||||..... +-...+.|.-++..
T Consensus 142 MyiFGGye~~a~-~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ 220 (392)
T KOG4693|consen 142 MYIFGGYEEDAQ-RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMA 220 (392)
T ss_pred EEEecChHHHHH-hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEE
Confidence 999999865432 34689999999999999996 3455688999999999999999986532 33334455444445
Q ss_pred cccccCCeEEccC---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC-
Q 016413 256 GKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP- 330 (390)
Q Consensus 256 ~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~- 330 (390)
+|..+..|...++ .|.+|.+|++.+++++||+|||+++.- +.-.+++|.|| .+..|+.|.
T Consensus 221 ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l---------------n~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 221 LDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL---------------NVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred EeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhh---------------hhhhcceeecccccchheeeec
Confidence 5579999998754 578899999999999999999998742 24567899999 677999986
Q ss_pred --CCCCCCCcceeEEEEECCEEEEEcCCCC
Q 016413 331 --PMPKPNSHIECAWVIVNNSIIITGGTTE 358 (390)
Q Consensus 331 --~~~~~~~~~~~~~~~~~~~l~v~GG~~~ 358 (390)
.-|.+|.+. ++++.++|+|+|||...
T Consensus 286 ~Gk~P~aRRRq--C~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 286 RGKYPSARRRQ--CSVVSGGKVYLFGGTSP 313 (392)
T ss_pred cCCCCCcccce--eEEEECCEEEEecCCCC
Confidence 456777765 34899999999999765
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=7.3e-36 Score=297.15 Aligned_cols=272 Identities=16% Similarity=0.278 Sum_probs=213.5
Q ss_pred ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCC-----CchhHHHhhhcccccccCC
Q 016413 32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK-----GQDAERFLSATFADLPAPD 106 (390)
Q Consensus 32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 106 (390)
...+++.||. + .......+|++.++.|..++.++. +..++++++++. |.........+++.||+.+
T Consensus 250 ~~~~~~~~g~-~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 320 (534)
T PHA03098 250 GSIIYIHITM-S----IFTYNYITNYSPLSEINTIIDIHY----VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT 320 (534)
T ss_pred CcceEeeccc-c----hhhceeeecchhhhhcccccCccc----cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCC
Confidence 3456666665 2 123456678888889998876542 333455555544 2222222334899999999
Q ss_pred CCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEec
Q 016413 107 LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG 186 (390)
Q Consensus 107 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG 186 (390)
++|..+++|+.+|..+++++++++|||+||.+.. ..++++++||+.+++|+.+++||. +|..+++++.+++|||+||
T Consensus 321 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~--~r~~~~~~~~~~~iYv~GG 397 (534)
T PHA03098 321 KSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIF--PRYNPCVVNVNNLIYVIGG 397 (534)
T ss_pred CeeeECCCCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCc--CCccceEEEECCEEEEECC
Confidence 9999999999999999999999999999998743 346889999999999999999987 5889999999999999999
Q ss_pred eeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEc
Q 016413 187 QYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE 266 (390)
Q Consensus 187 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 266 (390)
..... ..++++++||+.+++|+.++++|.+|.++++++++++|||+||....... ..++ .++.||+.+++|+.+
T Consensus 398 ~~~~~--~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~-~v~~yd~~~~~W~~~ 471 (534)
T PHA03098 398 ISKND--ELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNI---KVYN-IVESYNPVTNKWTEL 471 (534)
T ss_pred cCCCC--cccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCC---cccc-eEEEecCCCCceeeC
Confidence 75443 23789999999999999999999999999999999999999997643211 0111 133444899999999
Q ss_pred cCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCc
Q 016413 267 IPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSH 338 (390)
Q Consensus 267 ~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~ 338 (390)
+++|.+|..+++++++++|||+||.+... ..+++++|| .+++|+.++.+|.....
T Consensus 472 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~~~~ 527 (534)
T PHA03098 472 SSLNFPRINASLCIFNNKIYVVGGDKYEY-----------------YINEIEVYDDKTNTWTLFCKFPKVIGS 527 (534)
T ss_pred CCCCcccccceEEEECCEEEEEcCCcCCc-----------------ccceeEEEeCCCCEEEecCCCcccccc
Confidence 99999898889999999999999987532 356799999 78899999987765443
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.4e-35 Score=273.94 Aligned_cols=242 Identities=17% Similarity=0.207 Sum_probs=186.5
Q ss_pred cCCCceEEEECCEEEEEecCCCCCC---------CCCeEEEEe-CCCC-ceeecCCCCCCCCCcceEEEEeCCEEEEEec
Q 016413 118 PRLDGAAIQIKNLFYVFAGYGSLDY---------VHSHVDVYN-FTDN-KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG 186 (390)
Q Consensus 118 ~R~~~~~~~~~~~lyv~GG~~~~~~---------~~~~v~~yd-~~~~-~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG 186 (390)
-+.++.++++++.|||+||.+.... ..+++++|+ +..+ +|..+++||. +|..+++++++++||++||
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~--~r~~~~~~~~~~~lyviGG 80 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPY--EAAYGASVSVENGIYYIGG 80 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCc--cccceEEEEECCEEEEEcC
Confidence 3567888999999999999865431 335788885 3322 7999999987 4666777888999999999
Q ss_pred eeCCCCCCCCceEEEEECCCCCe----EeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCC
Q 016413 187 QYGPQCRGPTSRTFVLDSETRKW----DSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA 262 (390)
Q Consensus 187 ~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (390)
.++.. .++++++||+.+++| +.+++||.+|..|++++++++|||+||.......+++++|| +.+++
T Consensus 81 ~~~~~---~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd-------~~~~~ 150 (323)
T TIGR03548 81 SNSSE---RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFN-------LETQE 150 (323)
T ss_pred CCCCC---CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEc-------CCCCC
Confidence 87543 378999999999988 78899999999999999999999999975444445555555 78999
Q ss_pred eEEccCCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCC---CCCC
Q 016413 263 WRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP---KPNS 337 (390)
Q Consensus 263 W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~---~~~~ 337 (390)
|+.++++|. +|..+++++++++|||+||.++.. ..++++|| .+++|+.+++|+ .|+.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~------------------~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA------------------YTDGYKYSPKKNQWQKVADPTTDSEPIS 212 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc------------------ccceEEEecCCCeeEECCCCCCCCCcee
Confidence 999998874 787788889999999999986431 24689999 788999998764 4554
Q ss_pred ccee-EEEEECCEEEEEcCCCCCCCc-------------------------ceeeEEeeeEEEeecCccceeeccCCC
Q 016413 338 HIEC-AWVIVNNSIIITGGTTEKHPM-------------------------TKRMILVGEVFQFHLDSLVIIYHYRPP 389 (390)
Q Consensus 338 ~~~~-~~~~~~~~l~v~GG~~~~~~~-------------------------~~~~~~~~~v~~yd~~~~~W~~v~~~P 389 (390)
...+ +++..+++|||+||.+..... .......+++++||+++++|+.++.+|
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 290 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP 290 (323)
T ss_pred ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc
Confidence 4333 345567999999998753100 000012367999999999999998776
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=289.62 Aligned_cols=189 Identities=18% Similarity=0.347 Sum_probs=166.1
Q ss_pred cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe
Q 016413 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (390)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~ 177 (390)
.++.||+.+++|..+++|+.+|..+++++++++||++||.+.. +++++|||.+++|..+++||. +|..++++++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~--~r~~~~~~~~ 361 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLK--PRCNPAVASI 361 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCC--CCcccEEEEE
Confidence 6777888888899999999999999999999999999998642 569999999999999999997 5888999999
Q ss_pred CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccc
Q 016413 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK 257 (390)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 257 (390)
+++||++||.++. .+.+++|||.+++|+.+++|+.+|..+++++++++|||+||. +++|+
T Consensus 362 ~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~yd------- 421 (480)
T PHA02790 362 NNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYC------- 421 (480)
T ss_pred CCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEec-------
Confidence 9999999997532 367999999999999999999999999999999999999983 34555
Q ss_pred cccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEEC
Q 016413 258 ALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL 329 (390)
Q Consensus 258 ~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~ 329 (390)
|.+++|+.+++||.+|..+++++++++||++||.++.. .++.+++|| .+++|+..
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~-----------------~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS-----------------YIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCc-----------------ccceEEEEECCCCeEEec
Confidence 78999999999999999999999999999999986431 246799999 78899875
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.5e-35 Score=278.83 Aligned_cols=276 Identities=18% Similarity=0.280 Sum_probs=202.3
Q ss_pred HHHHHHHHHhhccEEEEecCCCCCCCccccceeeeeccC--CCceEeecCCCC-CccccccceEEEecCC-----Cchh-
Q 016413 21 CVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALE--KSGVVVIPHVNA-TKIDRQRESVAVIDKK-----GQDA- 91 (390)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~--~~~W~~l~~~~~-~p~~r~~~~~~~~~~~-----~~~~- 91 (390)
..+..++++++++.||++||. .. +.++.||++ +++|..+++++. + |..++++++++. |...
T Consensus 27 ~~~~~~~~~~~~~~iyv~gG~-~~------~~~~~~d~~~~~~~W~~l~~~p~~~---r~~~~~v~~~~~IYV~GG~~~~ 96 (376)
T PRK14131 27 VPFKNGTGAIDNNTVYVGLGS-AG------TSWYKLDLNAPSKGWTKIAAFPGGP---REQAVAAFIDGKLYVFGGIGKT 96 (376)
T ss_pred cCccCCeEEEECCEEEEEeCC-CC------CeEEEEECCCCCCCeEECCcCCCCC---cccceEEEECCEEEEEcCCCCC
Confidence 344556788899999999998 22 247788875 578999998864 4 878877777665 2111
Q ss_pred -H---HHhhhcccccccCCCCeEECCC-CCCcCCCceEEE-ECCEEEEEecCCCCC------------------------
Q 016413 92 -E---RFLSATFADLPAPDLEWEQMPS-APVPRLDGAAIQ-IKNLFYVFAGYGSLD------------------------ 141 (390)
Q Consensus 92 -~---~~~~~~~~~~~~~~~~W~~~~~-~~~~R~~~~~~~-~~~~lyv~GG~~~~~------------------------ 141 (390)
. .....++++||+.+++|+.+++ +|.+|.+|++++ .+++|||+||.+...
T Consensus 97 ~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~ 176 (376)
T PRK14131 97 NSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDA 176 (376)
T ss_pred CCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHH
Confidence 0 1123489999999999999986 466777787776 799999999975310
Q ss_pred ---------CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceE--EEEECCCCCeE
Q 016413 142 ---------YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT--FVLDSETRKWD 210 (390)
Q Consensus 142 ---------~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v--~~yd~~~~~W~ 210 (390)
..++++++||+.+++|+.++++|.+ +|.+++++.++++|||+||...... ...++ +.||+++++|+
T Consensus 177 ~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~-~~~~~a~v~~~~~iYv~GG~~~~~~--~~~~~~~~~~~~~~~~W~ 253 (376)
T PRK14131 177 YFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL-GTAGSAVVIKGNKLWLINGEIKPGL--RTDAVKQGKFTGNNLKWQ 253 (376)
T ss_pred HhcCChhhcCcCceEEEEECCCCeeeECCcCCCC-CCCcceEEEECCEEEEEeeeECCCc--CChhheEEEecCCCccee
Confidence 1247899999999999999988853 4778889999999999999765432 13333 45688999999
Q ss_pred eCCCCCCCCCC--------ceEEEECCEEEEEccCCCCCC----------C--CCcceEEeeeeccccccCCeEEccCCC
Q 016413 211 SIPPLPSPRYS--------PATQLWRGRLHVMGGSKENRH----------T--PGLEHWSIAVKDGKALEKAWRTEIPIP 270 (390)
Q Consensus 211 ~~~~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~----------~--~~~~~~~~~~~~~~~~~~~W~~~~~~p 270 (390)
.+++||.+|.. +.+++++++|||+||...... . .....+..++|+ +.+++|+.+++||
T Consensus 254 ~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd--~~~~~W~~~~~lp 331 (376)
T PRK14131 254 KLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYA--LVNGKWQKVGELP 331 (376)
T ss_pred ecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEE--ecCCcccccCcCC
Confidence 99999887642 225678999999999753210 0 000112222222 6899999999999
Q ss_pred CCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeE
Q 016413 271 RGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWK 327 (390)
Q Consensus 271 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~ 327 (390)
.+|..+++++++++|||+||..... ..+++|++|+ .++++.
T Consensus 332 ~~r~~~~av~~~~~iyv~GG~~~~~----------------~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 332 QGLAYGVSVSWNNGVLLIGGETAGG----------------KAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CCccceEEEEeCCEEEEEcCCCCCC----------------cEeeeEEEEEEcCCEEE
Confidence 9999889999999999999975431 2467899998 555554
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=5.9e-33 Score=234.81 Aligned_cols=257 Identities=19% Similarity=0.323 Sum_probs=202.4
Q ss_pred CeEECCCCCCcCCCceEEEECCEEEEEecCCCCCC----CCCeEEEEeCCCCceeecCC--------CC---CCCCCcce
Q 016413 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDY----VHSHVDVYNFTDNKWVDRFD--------MP---KDMAHSHL 172 (390)
Q Consensus 108 ~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~----~~~~v~~yd~~~~~W~~~~~--------l~---~~~~r~~~ 172 (390)
+|+.--.--..|-.|+++.++++||-|||+...+. ..-+|.++|..+-+|+.+++ .+ .|.-|++|
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGH 82 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGH 82 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCc
Confidence 45443222335779999999999999999864331 12369999999999999875 11 14469999
Q ss_pred EEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCCC--CCCCCCcc
Q 016413 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKE--NRHTPGLE 247 (390)
Q Consensus 173 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~ 247 (390)
+++..++++||.||.+... ...+.++.||++++.|.+.. -+|.+|.+|+++++++.+|||||+.. +++.+++.
T Consensus 83 tvV~y~d~~yvWGGRND~e--gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h 160 (392)
T KOG4693|consen 83 TVVEYQDKAYVWGGRNDDE--GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTH 160 (392)
T ss_pred eEEEEcceEEEEcCccCcc--cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccce
Confidence 9999999999999988755 45899999999999998875 57899999999999999999999854 34555555
Q ss_pred eEEeeeeccccccCCeEEcc---CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CC
Q 016413 248 HWSIAVKDGKALEKAWRTEI---PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE 323 (390)
Q Consensus 248 ~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~ 323 (390)
.+| ..+.+|+.+. ..|+-|-.|++.++++.+|||||...... .-...++++.++|..+| .+
T Consensus 161 ~ld-------~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~g--------pfHs~~e~Yc~~i~~ld~~T 225 (392)
T KOG4693|consen 161 VLD-------FATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESG--------PFHSIHEQYCDTIMALDLAT 225 (392)
T ss_pred eEe-------ccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCC--------CccchhhhhcceeEEEeccc
Confidence 555 5899999984 46788888999999999999999865431 12234567889999999 89
Q ss_pred CCeEECCCCC-CCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeecc
Q 016413 324 MKWKVLPPMP-KPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHY 386 (390)
Q Consensus 324 ~~W~~~~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 386 (390)
..|...++-+ .|..+.++++.+.+++||+|||+++.-.. -++|+|+|||.+..|+.+.
T Consensus 226 ~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~-----HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 226 GAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV-----HFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred cccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh-----hhcceeecccccchheeee
Confidence 9999876422 33334456779999999999999987653 5789999999999999873
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=4.2e-29 Score=242.58 Aligned_cols=269 Identities=18% Similarity=0.247 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHhhccEEEEecCCCCCCCccccce--eeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhh
Q 016413 19 FLCVLGLLGAALIADFMWASSSSSFSSSSAHLSV--ASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLS 96 (390)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~--~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~ 96 (390)
.+..+..|+++++++.+|++||... ...+.. ++.+|..+..|........
T Consensus 57 ~p~~R~~hs~~~~~~~~~vfGG~~~---~~~~~~~dl~~~d~~~~~w~~~~~~g~------------------------- 108 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLYVFGGYGS---GDRLTDLDLYVLDLESQLWTKPAATGD------------------------- 108 (482)
T ss_pred CcchhhccceeEECCEEEEECCCCC---CCccccceeEEeecCCcccccccccCC-------------------------
Confidence 4588999999999999999999833 333333 6666655544444433222
Q ss_pred hcccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC-CCCCcceEEE
Q 016413 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVV 175 (390)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~-~~~r~~~~~~ 175 (390)
.|.+|.+|.++.++++||+|||.+.....+++++.||+.+++|..+.+... |.+|.+|+++
T Consensus 109 ------------------~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~ 170 (482)
T KOG0379|consen 109 ------------------EPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSAT 170 (482)
T ss_pred ------------------CCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEE
Confidence 357899999999999999999998655557899999999999999876555 6689999999
Q ss_pred EeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCC-CCCCCCCcceEEe
Q 016413 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSK-ENRHTPGLEHWSI 251 (390)
Q Consensus 176 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~~~ 251 (390)
+.+++||||||.+.... ..+++++||+++.+|.++. +.|.||++|++++++++++|+||.. ...+.+++..+|+
T Consensus 171 ~~g~~l~vfGG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl 248 (482)
T KOG0379|consen 171 VVGTKLVVFGGIGGTGD--SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDL 248 (482)
T ss_pred EECCEEEEECCccCccc--ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeec
Confidence 99999999999987652 4899999999999999986 6788999999999999999999988 6677888888885
Q ss_pred eeeccccccCCeEEcc---CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeE
Q 016413 252 AVKDGKALEKAWRTEI---PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWK 327 (390)
Q Consensus 252 ~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~ 327 (390)
.+.+|..+. ..|.+|+.|+.+..+++++|+||..... ...++++|.|| ++..|.
T Consensus 249 -------~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~---------------~~~l~~~~~l~~~~~~w~ 306 (482)
T KOG0379|consen 249 -------STWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPK---------------QEPLGDLYGLDLETLVWS 306 (482)
T ss_pred -------ccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccc---------------ccccccccccccccccee
Confidence 689999764 4789999999999999999999986531 02578899999 888999
Q ss_pred ECCC----CCCCCCcceeEEEEECC--EEEEEcCCC
Q 016413 328 VLPP----MPKPNSHIECAWVIVNN--SIIITGGTT 357 (390)
Q Consensus 328 ~~~~----~~~~~~~~~~~~~~~~~--~l~v~GG~~ 357 (390)
.+.. .|.|+..+....+...+ ...++||..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (482)
T KOG0379|consen 307 KVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQ 342 (482)
T ss_pred eeeccccccccccccccceeeccCCccceeeecCcc
Confidence 8763 35666655443333222 344455543
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=239.58 Aligned_cols=244 Identities=24% Similarity=0.430 Sum_probs=202.0
Q ss_pred CCCCcCCCceEEEECCEEEEEecCCCCCCCCC-eEEEEeCCCCceeecCC-CCCCCCCcceEEEEeCCEEEEEeceeCCC
Q 016413 114 SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFTDNKWVDRFD-MPKDMAHSHLGVVSDGRYIYIVSGQYGPQ 191 (390)
Q Consensus 114 ~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~~~~W~~~~~-l~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 191 (390)
..|.+|..|+++.+++++|||||........+ +++++|..+..|..... -..|.+|.+|.++.++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 36788999999999999999999876654333 69999999999987543 23345799999999999999999988633
Q ss_pred CCCCCceEEEEECCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCCCCC-CCCCcceEEeeeeccccccCCeEEc-
Q 016413 192 CRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTE- 266 (390)
Q Consensus 192 ~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~- 266 (390)
..+++++.||+.+.+|+.+. ..|.+|.+|++++++++||||||..... ..+++.+|| +++.+|.++
T Consensus 136 --~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d-------~~~~~W~~~~ 206 (482)
T KOG0379|consen 136 --RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYD-------LETSTWSELD 206 (482)
T ss_pred --CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeec-------cccccceecc
Confidence 44899999999999999886 4689999999999999999999987655 566666666 589999997
Q ss_pred --cCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC---CCCCCCCcce
Q 016413 267 --IPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP---PMPKPNSHIE 340 (390)
Q Consensus 267 --~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~---~~~~~~~~~~ 340 (390)
.+.|.+|.+|++++++++++|+||.+.. +.+++|+|.+| .+.+|+.+. .+|.||..|
T Consensus 207 ~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h- 269 (482)
T KOG0379|consen 207 TQGEAPSPRYGHAMVVVGNKLLVFGGGDDG----------------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGH- 269 (482)
T ss_pred cCCCCCCCCCCceEEEECCeEEEEeccccC----------------CceecceEeeecccceeeeccccCCCCCCccee-
Confidence 3578899999999999999999998732 25899999999 788999765 577888765
Q ss_pred eEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCC
Q 016413 341 CAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPP 389 (390)
Q Consensus 341 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P 389 (390)
.++..+.+++++||...... ..+.++|.||.+++.|..+..++
T Consensus 270 -~~~~~~~~~~l~gG~~~~~~-----~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 270 -SLTVSGDHLLLFGGGTDPKQ-----EPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred -eeEEECCEEEEEcCCccccc-----ccccccccccccccceeeeeccc
Confidence 44699999999999877521 14679999999999999886543
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=6.6e-29 Score=221.92 Aligned_cols=257 Identities=19% Similarity=0.296 Sum_probs=195.7
Q ss_pred CCCCCcCCCceEEEE--CCEEEEEecC--CCCC-CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeC-CEEEEEec
Q 016413 113 PSAPVPRLDGAAIQI--KNLFYVFAGY--GSLD-YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG-RYIYIVSG 186 (390)
Q Consensus 113 ~~~~~~R~~~~~~~~--~~~lyv~GG~--~~~~-~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~-~~iyv~GG 186 (390)
.+.|.||.++++++. .+.|++|||. ++.. .+.++++.||..+++|..+..-..|.+|+.|++|++- +.+|+|||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 457899999998876 4689999995 3332 3568999999999999998665555679998888764 89999999
Q ss_pred eeCCCC---CCCCceEEEEECCCCCeEeCC--CCCCCCCCceEEEECCEEEEEccCCCC----CCCCCcceEEeeeeccc
Q 016413 187 QYGPQC---RGPTSRTFVLDSETRKWDSIP--PLPSPRYSPATQLWRGRLHVMGGSKEN----RHTPGLEHWSIAVKDGK 257 (390)
Q Consensus 187 ~~~~~~---~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~~~~~~~~ 257 (390)
.-.... ..-..++|.||..+++|+++. .-|.||++|.+++..++|++|||+... .|.+++.+|+
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~Fd------- 213 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFD------- 213 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEe-------
Confidence 754321 123589999999999999986 578999999999999999999998654 2445555555
Q ss_pred cccCCeEEccC---CCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CC---C--CeE
Q 016413 258 ALEKAWRTEIP---IPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE---M--KWK 327 (390)
Q Consensus 258 ~~~~~W~~~~~---~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~---~--~W~ 327 (390)
..+-+|+.+.+ -|.+|+++..++. ++.|||.||+.... ...........+|+|.++ .. + +|+
T Consensus 214 LdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~--------~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~ 285 (521)
T KOG1230|consen 214 LDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR--------VKKDVDKGTRHSDMFLLKPEDGREDKWVWT 285 (521)
T ss_pred ccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh--------hhhhhhcCceeeeeeeecCCcCCCcceeEe
Confidence 57999999854 4788888888888 99999999987432 111222345778999999 33 1 677
Q ss_pred ECC---CCCCCCCcceeEEEEECCEEEEEcCCCC--CCCcceeeEEeeeEEEeecCccceeec
Q 016413 328 VLP---PMPKPNSHIECAWVIVNNSIIITGGTTE--KHPMTKRMILVGEVFQFHLDSLVIIYH 385 (390)
Q Consensus 328 ~~~---~~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~~v~~yd~~~~~W~~v 385 (390)
.+. -.|.||..++++ +.-+++-++|||.-. ..+....+.++||+|.||+..++|...
T Consensus 286 kvkp~g~kPspRsgfsv~-va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 286 KVKPSGVKPSPRSGFSVA-VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eccCCCCCCCCCCceeEE-EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 765 467888888764 566779999999643 112223444889999999999999864
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.2e-27 Score=218.71 Aligned_cols=273 Identities=15% Similarity=0.174 Sum_probs=214.7
Q ss_pred cCCccccccchhhHHHHHHHHHHHhhccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEec
Q 016413 6 HHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVID 85 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~ 85 (390)
.-|||+-...-.-.+..+-.|-++++...|.+|||-++| +...++.|+..+++|..-..-..-|.+...++.+..+
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG----iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdG 91 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG----IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDG 91 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCccc----chhhhhhhccccceeecchhcCCCCCchhhcceEecC
Confidence 345555444333344788899999999999999998655 7889999999999998876666666668888877766
Q ss_pred CC-----CchhHHHhhhcccccccCCCCeEECCC-------CCCcCCCceEEEECCEEEEEecCCCC--------CCCCC
Q 016413 86 KK-----GQDAERFLSATFADLPAPDLEWEQMPS-------APVPRLDGAAIQIKNLFYVFAGYGSL--------DYVHS 145 (390)
Q Consensus 86 ~~-----~~~~~~~~~~~~~~~~~~~~~W~~~~~-------~~~~R~~~~~~~~~~~lyv~GG~~~~--------~~~~~ 145 (390)
.. |+.....+++++|.+.....+|+++.+ +|.||.+|+..++++|.|+|||...+ .++++
T Consensus 92 trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLn 171 (830)
T KOG4152|consen 92 TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLN 171 (830)
T ss_pred ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhc
Confidence 55 555566677799999988889998843 67999999999999999999997321 14789
Q ss_pred eEEEEeCCCC----ceeec-CCCCCCCCCcceEEEEe------CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC-
Q 016413 146 HVDVYNFTDN----KWVDR-FDMPKDMAHSHLGVVSD------GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP- 213 (390)
Q Consensus 146 ~v~~yd~~~~----~W~~~-~~l~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~- 213 (390)
|++++++.-. -|... ..-+.|.+|..|.++.. ..++||+||..+.. +.++|.+|+++..|.+..
T Consensus 172 DlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 172 DLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSL 247 (830)
T ss_pred ceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeecccccc
Confidence 9999988744 38763 22223446888888876 45899999998854 899999999999999875
Q ss_pred --CCCCCCCCceEEEECCEEEEEccCCC--------------CCCCCCcceEEeeeeccccccCCeEEcc-------CCC
Q 016413 214 --PLPSPRYSPATQLWRGRLHVMGGSKE--------------NRHTPGLEHWSIAVKDGKALEKAWRTEI-------PIP 270 (390)
Q Consensus 214 --~~p~~r~~~~~~~~~~~iyv~GG~~~--------------~~~~~~~~~~~~~~~~~~~~~~~W~~~~-------~~p 270 (390)
-.|.||+.|++++++|++|||||+-- -.+.++..+|++ .++.|+.+- ..|
T Consensus 248 ~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNl-------dt~~W~tl~~d~~ed~tiP 320 (830)
T KOG4152|consen 248 SGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNL-------DTMAWETLLMDTLEDNTIP 320 (830)
T ss_pred cCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeee-------cchheeeeeeccccccccc
Confidence 46788999999999999999999731 123445555664 689998862 379
Q ss_pred CCCCceeEEEECCEEEEEcCCCC
Q 016413 271 RGGPHRACFVFNDRLFVVGGQEG 293 (390)
Q Consensus 271 ~~~~~~~~~~~~~~iyv~GG~~~ 293 (390)
++|.+|.+++++.+|||.-|.++
T Consensus 321 R~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 321 RARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred cccccceeEEeccEEEEEeccch
Confidence 99999999999999999999876
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=201.17 Aligned_cols=256 Identities=19% Similarity=0.290 Sum_probs=186.3
Q ss_pred ecCCCCCccccccceEEEecCC------Cc---hh-HHHhhhcccccccCCCCeEEC--CCCCCcCCCceEEEEC-CEEE
Q 016413 66 IPHVNATKIDRQRESVAVIDKK------GQ---DA-ERFLSATFADLPAPDLEWEQM--PSAPVPRLDGAAIQIK-NLFY 132 (390)
Q Consensus 66 l~~~~~~p~~r~~~~~~~~~~~------~~---~~-~~~~~~~~~~~~~~~~~W~~~--~~~~~~R~~~~~~~~~-~~ly 132 (390)
+.....+|..|.+....+.... |. .+ ...+-+++|.||...++|+++ ++.|.||+.|+++++- +.+|
T Consensus 57 ~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~ 136 (521)
T KOG1230|consen 57 VETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILW 136 (521)
T ss_pred eeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEE
Confidence 3344455666877776654333 11 11 112334899999999999987 4478899999998886 8999
Q ss_pred EEecCCCCC-----CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCC-CCCCCCceEEEEECCC
Q 016413 133 VFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP-QCRGPTSRTFVLDSET 206 (390)
Q Consensus 133 v~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~v~~yd~~~ 206 (390)
+|||.-... ....++|+||+.+++|+++..-..|.+|++|-+++...+|++|||+... ..+...++|++||+++
T Consensus 137 ~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt 216 (521)
T KOG1230|consen 137 LFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT 216 (521)
T ss_pred EeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc
Confidence 999974322 2357899999999999999776667789999999999999999999654 3345689999999999
Q ss_pred CCeEeCCC---CCCCCCCceEEEE-CCEEEEEccCCCCCC-------CCCcceEEeeeeccccccCCeEEccC---CCCC
Q 016413 207 RKWDSIPP---LPSPRYSPATQLW-RGRLHVMGGSKENRH-------TPGLEHWSIAVKDGKALEKAWRTEIP---IPRG 272 (390)
Q Consensus 207 ~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~-------~~~~~~~~~~~~~~~~~~~~W~~~~~---~p~~ 272 (390)
-+|+++.+ -|.||++|++.+. ++.|||.||++.... ....+.|.+...+.+...-+|+.+.+ -|.+
T Consensus 217 ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp 296 (521)
T KOG1230|consen 217 YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP 296 (521)
T ss_pred eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC
Confidence 99999975 4789999999988 999999999864321 12234444432221111256888854 4778
Q ss_pred CCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEEC
Q 016413 273 GPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL 329 (390)
Q Consensus 273 ~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~ 329 (390)
|.++++++. +++-+.|||...-.. ....-+..+.+++|.|| ..++|...
T Consensus 297 Rsgfsv~va~n~kal~FGGV~D~ee--------eeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 297 RSGFSVAVAKNHKALFFGGVCDLEE--------EEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred CCceeEEEecCCceEEecceecccc--------cchhhhhhhhhhhhheecccchhhHh
Confidence 888888776 459999999754110 01223357999999999 88899764
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2.3e-23 Score=190.90 Aligned_cols=289 Identities=15% Similarity=0.180 Sum_probs=199.2
Q ss_pred CCCceEeecCCCCC-ccccccceEEEecCC----CchhHHHhhhcccccccCCCCeEEC---CCCCCcCCCceEEEECCE
Q 016413 59 EKSGVVVIPHVNAT-KIDRQRESVAVIDKK----GQDAERFLSATFADLPAPDLEWEQM---PSAPVPRLDGAAIQIKNL 130 (390)
Q Consensus 59 ~~~~W~~l~~~~~~-p~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~W~~~---~~~~~~R~~~~~~~~~~~ 130 (390)
.--+|.++.....| |..|+.|-++++..- |......++ +++.||..+++|..- ...|.+...|..+..+.+
T Consensus 15 ~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiD-ELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtr 93 (830)
T KOG4152|consen 15 NVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIID-ELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTR 93 (830)
T ss_pred cccceEEEecccCCCCCccccchheeeeeeEEEecCCcccchh-hhhhhccccceeecchhcCCCCCchhhcceEecCce
Confidence 44479887665433 345777766655443 333333344 899999999999753 347777788889999999
Q ss_pred EEEEecCCCCCCCCCeEEEEeCCCCceeecCCC-----CCCCCCcceEEEEeCCEEEEEeceeCCCC------CCCCceE
Q 016413 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-----PKDMAHSHLGVVSDGRYIYIVSGQYGPQC------RGPTSRT 199 (390)
Q Consensus 131 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l-----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v 199 (390)
||+|||..+-..+.++++.+....-.|.++.+- +.|-+|-+|+.++.+++-|+|||...+.. -..++++
T Consensus 94 ilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDl 173 (830)
T KOG4152|consen 94 ILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDL 173 (830)
T ss_pred EEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcce
Confidence 999999987777777776666555667776432 22457999999999999999999743221 1347889
Q ss_pred EEEECCCC----CeEeCC---CCCCCCCCceEEEE------CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEc
Q 016413 200 FVLDSETR----KWDSIP---PLPSPRYSPATQLW------RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE 266 (390)
Q Consensus 200 ~~yd~~~~----~W~~~~---~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 266 (390)
+..++... .|+..- .+|.+|..|.++++ ..++||+||.++-+ +.+.+..| .++..|++.
T Consensus 174 Y~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-LgDLW~Ld-------l~Tl~W~kp 245 (830)
T KOG4152|consen 174 YILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-LGDLWTLD-------LDTLTWNKP 245 (830)
T ss_pred EEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-ccceeEEe-------cceeecccc
Confidence 98888744 387763 68999999999988 34899999987643 44444445 478899885
Q ss_pred c---CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECC-----CCCCCCC
Q 016413 267 I---PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP-----PMPKPNS 337 (390)
Q Consensus 267 ~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~-----~~~~~~~ 337 (390)
. -.|.+|+-|++..+++++|||||.-.--..+ .+ .+..+..=.-.+.+-++| .++.|+.+- +-..||.
T Consensus 246 ~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~--~~-~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~ 322 (830)
T KOG4152|consen 246 SLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDD--VK-VATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRA 322 (830)
T ss_pred cccCCCCCCcccccceeecceeEEecceeeeeccc--cc-cccccceeeeccceeeeeecchheeeeeeccccccccccc
Confidence 2 2334444569999999999999964321100 00 001111112345566778 788999763 3336666
Q ss_pred cceeEEEEECCEEEEEcCCCCC
Q 016413 338 HIECAWVIVNNSIIITGGTTEK 359 (390)
Q Consensus 338 ~~~~~~~~~~~~l~v~GG~~~~ 359 (390)
|.+++++.++.+|||..|.++-
T Consensus 323 RAGHCAvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 323 RAGHCAVAIGTRLYIWSGRDGY 344 (830)
T ss_pred cccceeEEeccEEEEEeccchh
Confidence 6777889999999999998764
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.86 E-value=4.7e-20 Score=163.34 Aligned_cols=267 Identities=19% Similarity=0.261 Sum_probs=188.0
Q ss_pred ccccccc--CCCCeEECCCCC-CcCCCceEEEECCEEEEEecCCCCC----CCCCeEEEEeCCCCceeecCCCCCCCCCc
Q 016413 98 TFADLPA--PDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD----YVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170 (390)
Q Consensus 98 ~~~~~~~--~~~~W~~~~~~~-~~R~~~~~~~~~~~lyv~GG~~~~~----~~~~~v~~yd~~~~~W~~~~~l~~~~~r~ 170 (390)
.++..|. ....|++++..| .+|.+..+++++++||||||..... ...+++++|||.+|+|+.+.... |+...
T Consensus 59 afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~ 137 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLV 137 (381)
T ss_pred cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccc
Confidence 4444444 446899999977 6799999999999999999985433 35789999999999999986643 23456
Q ss_pred ceEEEEeCC-EEEEEeceeCCC-------------------------------CCCCCceEEEEECCCCCeEeCCCCC-C
Q 016413 171 HLGVVSDGR-YIYIVSGQYGPQ-------------------------------CRGPTSRTFVLDSETRKWDSIPPLP-S 217 (390)
Q Consensus 171 ~~~~~~~~~-~iyv~GG~~~~~-------------------------------~~~~~~~v~~yd~~~~~W~~~~~~p-~ 217 (390)
.++++.+++ +||++||.+... .+.-...+..|+|+++.|+.+...| .
T Consensus 138 G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~ 217 (381)
T COG3055 138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFY 217 (381)
T ss_pred cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCccc
Confidence 777777776 999999984210 1123578999999999999999777 4
Q ss_pred CCCCceEEEECCEEEEEccCCCCC-CCCCcceEEeeeeccccccCCeEEccCCCCCCCc-------eeEEEECCEEEEEc
Q 016413 218 PRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPH-------RACFVFNDRLFVVG 289 (390)
Q Consensus 218 ~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~-------~~~~~~~~~iyv~G 289 (390)
++++.+.+.-+|++.++-|.-... +...+.++++. -...+|..++++|.+... +-.--.++.+.|.|
T Consensus 218 ~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~-----~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~G 292 (381)
T COG3055 218 GNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFG-----GDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAG 292 (381)
T ss_pred CccCcceeecCCeEEEEcceecCCccccceeEEEec-----cCceeeeeccCCCCCCCCCccccceeccceeCCeEEEec
Confidence 677766666788899998864332 33444555542 356789999776643221 12234578899999
Q ss_pred CCCCCC--CCCCCCCccccccccceecCcEEeeCCCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeE
Q 016413 290 GQEGDF--MAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMI 367 (390)
Q Consensus 290 G~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 367 (390)
|-+-.. ..-.++..+.+..-...+.++||.+| .+.|+.+..||.++.. ++ .+..+++||++||.+....
T Consensus 293 GAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~l~Y-G~-s~~~nn~vl~IGGE~~~Gk------ 363 (381)
T COG3055 293 GANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQGLAY-GV-SLSYNNKVLLIGGETSGGK------ 363 (381)
T ss_pred CCCChhHHHHHHhcccccccchhhhhhceEEEEc-CCceeeecccCCCccc-eE-EEecCCcEEEEccccCCCe------
Confidence 965322 11122334444444456889999996 7799999999997764 33 4778999999999987765
Q ss_pred EeeeEEEeecCc
Q 016413 368 LVGEVFQFHLDS 379 (390)
Q Consensus 368 ~~~~v~~yd~~~ 379 (390)
...+++.+....
T Consensus 364 a~~~v~~l~~~g 375 (381)
T COG3055 364 ATTRVYSLSWDG 375 (381)
T ss_pred eeeeEEEEEEcC
Confidence 455666655443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.81 E-value=2.3e-18 Score=152.68 Aligned_cols=257 Identities=19% Similarity=0.264 Sum_probs=184.3
Q ss_pred EECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCC--CCceeecCCCCCCCCCcceEEEEeCCEEEEEece
Q 016413 110 EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187 (390)
Q Consensus 110 ~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~ 187 (390)
..+|.+|.+-...+.+.+++.+||-=|..+. +.+..|++ ...|+.++..|-. +|.....++++++||+|||.
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~ 101 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGY 101 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeecc
Confidence 4567788887777888889999998664332 24555654 4689999999876 69999999999999999998
Q ss_pred eCCCC--CCCCceEEEEECCCCCeEeCC-CCCCCCCCceEEEECC-EEEEEccCCCCC----------------------
Q 016413 188 YGPQC--RGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWRG-RLHVMGGSKENR---------------------- 241 (390)
Q Consensus 188 ~~~~~--~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~-~iyv~GG~~~~~---------------------- 241 (390)
..... ....+++++|||++++|+++. ..|....+++++.+++ +||++||.+..-
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 54432 244699999999999999997 4567778888899988 999999975311
Q ss_pred -----CCCCcceEEeeeeccccccCCeEEccCCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecC
Q 016413 242 -----HTPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYG 315 (390)
Q Consensus 242 -----~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (390)
.......|+-++..|+|.+++|+.+...|. ++++++.+.-++++.++-|+--.. ..+.
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG----------------LRt~ 245 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG----------------LRTA 245 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCC----------------cccc
Confidence 012334566677888999999999987774 444434445577799998875432 2244
Q ss_pred cEEeeC-CC--CCeEECCCCCCCCCcc--eeE---EEEECCEEEEEcCCCCCC------------CcceeeEEeeeEEEe
Q 016413 316 DVYMLD-DE--MKWKVLPPMPKPNSHI--ECA---WVIVNNSIIITGGTTEKH------------PMTKRMILVGEVFQF 375 (390)
Q Consensus 316 ~v~~yd-~~--~~W~~~~~~~~~~~~~--~~~---~~~~~~~l~v~GG~~~~~------------~~~~~~~~~~~v~~y 375 (390)
.+++++ .. .+|..++++|.|.... +.+ .-..++.++|.||-.-.. .........++||.+
T Consensus 246 ~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~ 325 (381)
T COG3055 246 EVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIF 325 (381)
T ss_pred ceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEE
Confidence 577777 43 3999999888776533 111 124578899999843211 001112256789999
Q ss_pred ecCccceeeccCCCC
Q 016413 376 HLDSLVIIYHYRPPK 390 (390)
Q Consensus 376 d~~~~~W~~v~~~P~ 390 (390)
| .+.|+.++.+|+
T Consensus 326 d--~g~Wk~~GeLp~ 338 (381)
T COG3055 326 D--NGSWKIVGELPQ 338 (381)
T ss_pred c--CCceeeecccCC
Confidence 9 999999999996
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.42 E-value=9.4e-14 Score=128.05 Aligned_cols=258 Identities=14% Similarity=0.167 Sum_probs=166.6
Q ss_pred CCeEECCC----------CCCcCCCceEEEECC--EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC-CCCCCcceE
Q 016413 107 LEWEQMPS----------APVPRLDGAAIQIKN--LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHLG 173 (390)
Q Consensus 107 ~~W~~~~~----------~~~~R~~~~~~~~~~--~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~r~~~~ 173 (390)
.+|.++++ -|..|.+|.++.-.+ .||+.||+++... +.+.|.|+...+.|..+..-. .|-.|.+|-
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 47987754 356788999988765 8999999999875 578999999999999875433 355799999
Q ss_pred EEEeCC--EEEEEeceeCCCC---CCCCceEEEEECCCCCeEeCC------CCCCCCCCceEEEECCE--EEEEccCCCC
Q 016413 174 VVSDGR--YIYIVSGQYGPQC---RGPTSRTFVLDSETRKWDSIP------PLPSPRYSPATQLWRGR--LHVMGGSKEN 240 (390)
Q Consensus 174 ~~~~~~--~iyv~GG~~~~~~---~~~~~~v~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~--iyv~GG~~~~ 240 (390)
++..-. ++|++|-+-+... ....+++|+||..++.|.-+. .-|...+.|.+++.+++ |||+||+.-.
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~ 397 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT 397 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc
Confidence 998654 9999997744322 133589999999999999886 24667788999999888 9999998643
Q ss_pred CCCCCcceEEeeeeccccccCCeEEccC----------CCCCCCcee--EEEECCEEEEEcCCCCCCCCCCCCCcccccc
Q 016413 241 RHTPGLEHWSIAVKDGKALEKAWRTEIP----------IPRGGPHRA--CFVFNDRLFVVGGQEGDFMAKPGSPIFKCSR 308 (390)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~----------~p~~~~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 308 (390)
.- -.+|. -+|.|+.....|..+.. ....|.++. ++.-+..+|++||.....
T Consensus 398 ~~---e~~f~-GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~------------- 460 (723)
T KOG2437|consen 398 CN---EPQFS-GLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT------------- 460 (723)
T ss_pred CC---Ccccc-ceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-------------
Confidence 21 11121 13444468888987532 112333333 355577899999976532
Q ss_pred ccceecCcEEeeC-CCCC---eE-----ECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCc
Q 016413 309 RHEVVYGDVYMLD-DEMK---WK-----VLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDS 379 (390)
Q Consensus 309 ~~~~~~~~v~~yd-~~~~---W~-----~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 379 (390)
-++-.+.|| .... =+ .....|.+.......+-.-.+.|.+.-|....... +.....+..|+|++.+
T Consensus 461 ----El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~-~e~~~rns~wi~~i~~ 535 (723)
T KOG2437|consen 461 ----ELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEK-REENVRNSFWIYDIVR 535 (723)
T ss_pred ----EEeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccC-ccccccCcEEEEEecc
Confidence 122233342 1110 00 11111222111111112234678887787644321 1222568899999999
Q ss_pred cceeeccC
Q 016413 380 LVIIYHYR 387 (390)
Q Consensus 380 ~~W~~v~~ 387 (390)
+.|..+..
T Consensus 536 ~~w~cI~~ 543 (723)
T KOG2437|consen 536 NSWSCIYK 543 (723)
T ss_pred cchhhHhh
Confidence 99987643
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.35 E-value=2.5e-12 Score=84.64 Aligned_cols=49 Identities=29% Similarity=0.540 Sum_probs=45.0
Q ss_pred cCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCC
Q 016413 118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD 166 (390)
Q Consensus 118 ~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~ 166 (390)
||.+|++++++++|||+||.......++++++||+++++|+++++||.|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 6899999999999999999987555688999999999999999999984
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.34 E-value=3e-12 Score=84.28 Aligned_cols=50 Identities=28% Similarity=0.530 Sum_probs=45.3
Q ss_pred CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCC
Q 016413 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR 219 (390)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 219 (390)
+|.++++++.+++|||+||.... ....+++++||+++++|+++++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 48899999999999999998775 256899999999999999999999987
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.30 E-value=4.8e-13 Score=123.43 Aligned_cols=192 Identities=14% Similarity=0.151 Sum_probs=137.3
Q ss_pred CCCceEeecCCC-------CCccccccceEEEecCC-------CchhHHHhhhcccccccCCCCeEECC---CCCCcCCC
Q 016413 59 EKSGVVVIPHVN-------ATKIDRQRESVAVIDKK-------GQDAERFLSATFADLPAPDLEWEQMP---SAPVPRLD 121 (390)
Q Consensus 59 ~~~~W~~l~~~~-------~~p~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~W~~~~---~~~~~R~~ 121 (390)
-+-.|.+++.-. ..|..|..|-++...+. |-++...+. ++|.|+-..+.|..+. ..|-+|..
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~-DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLA-DFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHH-HHHhhcCCcceeEEeecCCCCCcchhh
Confidence 345788887765 55666888887766552 555666666 9999999999998874 37889999
Q ss_pred ceEEEECC--EEEEEecCCCCC-----CCCCeEEEEeCCCCceeecCCC----CCCCCCcceEEEEeCCE--EEEEecee
Q 016413 122 GAAIQIKN--LFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDM----PKDMAHSHLGVVSDGRY--IYIVSGQY 188 (390)
Q Consensus 122 ~~~~~~~~--~lyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~l----~~~~~r~~~~~~~~~~~--iyv~GG~~ 188 (390)
|.+++.-. |||++|-+-+.. ....+.|+||..++.|..+.-- ..|..-+.|.+++.+.+ |||+||..
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 99988755 999999874322 2356899999999999876321 22445678888888777 99999985
Q ss_pred CCCCCCCCceEEEEECCCCCeEeCCCC----------CCCCCCceEE--EECCEEEEEccCCCCCCCCCcceEEe
Q 016413 189 GPQCRGPTSRTFVLDSETRKWDSIPPL----------PSPRYSPATQ--LWRGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 189 ~~~~~~~~~~v~~yd~~~~~W~~~~~~----------p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
-........-++.||.+...|..+... -..|-+|.+- .-++.+|++||............|++
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I 470 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDI 470 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhccee
Confidence 443324568899999999999887521 1335555543 45778999999865443333444443
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.23 E-value=1.1e-11 Score=80.50 Aligned_cols=47 Identities=34% Similarity=0.592 Sum_probs=43.0
Q ss_pred cCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC
Q 016413 118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (390)
Q Consensus 118 ~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~ 164 (390)
||..|++++++++|||+||.+.....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999999999999986667899999999999999999886
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.10 E-value=1.3e-10 Score=75.40 Aligned_cols=47 Identities=36% Similarity=0.695 Sum_probs=42.0
Q ss_pred CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCC
Q 016413 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (390)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 216 (390)
+|..+++++++++|||+||.+... ..++++++||+++++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence 488999999999999999998833 56899999999999999999886
No 35
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.07 E-value=4.4e-10 Score=73.42 Aligned_cols=47 Identities=28% Similarity=0.515 Sum_probs=41.3
Q ss_pred cCCCceEEEECCEEEEEecC--CCCCCCCCeEEEEeCCCCceeecCCCC
Q 016413 118 PRLDGAAIQIKNLFYVFAGY--GSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (390)
Q Consensus 118 ~R~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~~~~W~~~~~l~ 164 (390)
||..|++++++++|||+||. +......+++++||+++++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999999999999999 334456789999999999999998875
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.05 E-value=2.1e-10 Score=75.08 Aligned_cols=47 Identities=30% Similarity=0.544 Sum_probs=32.1
Q ss_pred cCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC
Q 016413 118 PRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (390)
Q Consensus 118 ~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~ 164 (390)
||.+|+++.+ +++|||+||.+.....++++|+||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6999999998 5899999999887667899999999999999998776
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.99 E-value=9.8e-10 Score=71.76 Aligned_cols=49 Identities=24% Similarity=0.481 Sum_probs=42.3
Q ss_pred CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE
Q 016413 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227 (390)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 227 (390)
+++||||||.+.... ..++++++||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~-~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGG-TRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCC-CEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 578999999984222 5589999999999999999999999999999863
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.97 E-value=1.9e-09 Score=70.45 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=40.9
Q ss_pred CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCC
Q 016413 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (390)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 216 (390)
+|..|++++.+++|||+||..........+++++||+++++|+.+++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 4889999999999999999922222245899999999999999999875
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.95 E-value=2.2e-09 Score=70.11 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=41.0
Q ss_pred CCEEEEEecCC-CCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe
Q 016413 128 KNLFYVFAGYG-SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (390)
Q Consensus 128 ~~~lyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~ 177 (390)
+++|||+||.+ .....++++++||+.+++|++++++|. +|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEEC
Confidence 57999999998 345568999999999999999988876 6999998763
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.88 E-value=2.7e-09 Score=69.77 Aligned_cols=47 Identities=26% Similarity=0.542 Sum_probs=31.0
Q ss_pred CCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCC
Q 016413 168 AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (390)
Q Consensus 168 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 216 (390)
+|..|+++.+ +++|||+||.+... ..++++++||+++++|+++++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~--~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG--SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T--EE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC--cccCCEEEEECCCCEEEECCCCC
Confidence 4788888887 58999999998864 35899999999999999998887
No 41
>smart00612 Kelch Kelch domain.
Probab=98.87 E-value=3.9e-09 Score=68.24 Aligned_cols=47 Identities=34% Similarity=0.624 Sum_probs=41.3
Q ss_pred EEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECC
Q 016413 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG 229 (390)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 229 (390)
+|||+||.+.. ...+++++||+.+++|+.+++||.+|..++++++++
T Consensus 1 ~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG---QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC---ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998653 347899999999999999999999999999988764
No 42
>smart00612 Kelch Kelch domain.
Probab=98.75 E-value=1.8e-08 Score=65.07 Aligned_cols=47 Identities=30% Similarity=0.426 Sum_probs=39.3
Q ss_pred EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCC
Q 016413 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR 179 (390)
Q Consensus 130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~ 179 (390)
+|||+||.... ..++++++||+.+++|+.+++|+. +|..++++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT--PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC--ccccceEEEeCC
Confidence 48999998753 346889999999999999999987 588888887764
No 43
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.69 E-value=2.1e-06 Score=75.42 Aligned_cols=152 Identities=16% Similarity=0.247 Sum_probs=97.1
Q ss_pred eEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC----CCeEeCC-CCCCCCC
Q 016413 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET----RKWDSIP-PLPSPRY 220 (390)
Q Consensus 146 ~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~----~~W~~~~-~~p~~r~ 220 (390)
.-..||+.+++++.+....- . -+...+..-+|.+.++||.... ...+..|++.+ ..|.+.+ .|..+|.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td-~-FCSgg~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTD-T-FCSGGAFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEEEecCCCcEEeccCCCC-C-cccCcCCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcccccCCCc
Confidence 45679999999998754322 1 2222334468999999997542 45567788765 5798876 5899999
Q ss_pred CceEEEE-CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEcc----CCCCCCCceeEEEECCEEEEEcCCCCCC
Q 016413 221 SPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI----PIPRGGPHRACFVFNDRLFVVGGQEGDF 295 (390)
Q Consensus 221 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~----~~p~~~~~~~~~~~~~~iyv~GG~~~~~ 295 (390)
+.++..+ +++++|+||.... ..+.|.-. ...+....|..+. ..+...+-+....-+|+||+++...
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~----t~E~~P~~--~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--- 190 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP----TYEFWPPK--GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--- 190 (243)
T ss_pred cccceECCCCCEEEEeCcCCC----cccccCCc--cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC---
Confidence 9888866 7899999998732 22222100 0001112222222 2344555556677799999999853
Q ss_pred CCCCCCCccccccccceecCcEEeeC-CCCCe-EECCCCCC
Q 016413 296 MAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW-KVLPPMPK 334 (390)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-~~~~~~~~ 334 (390)
-.+|| .++++ +.++.+|.
T Consensus 191 ---------------------s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 191 ---------------------SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ---------------------cEEEeCCCCeEEeeCCCCCC
Confidence 45667 66655 78888875
No 44
>PF13854 Kelch_5: Kelch motif
Probab=98.67 E-value=5.4e-08 Score=61.05 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=36.0
Q ss_pred CCCcCCCceEEEECCEEEEEecCCC-CCCCCCeEEEEeCCCC
Q 016413 115 APVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDN 155 (390)
Q Consensus 115 ~~~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~ 155 (390)
+|.+|..|++++++++|||+||.+. ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999994 5567899999998763
No 45
>PLN02772 guanylate kinase
Probab=98.56 E-value=5.9e-07 Score=83.68 Aligned_cols=86 Identities=16% Similarity=0.254 Sum_probs=67.1
Q ss_pred CCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCC-CCCCCcceEEEEe-CCEEEEEeceeCCCCC
Q 016413 116 PVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHLGVVSD-GRYIYIVSGQYGPQCR 193 (390)
Q Consensus 116 ~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 193 (390)
..||..++++.+++++||+||.+......+.+++||..+++|....-+. .|.+|.+|+++++ +++|+|+++-.+.
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 3588899999999999999998775446789999999999998754332 2457888998877 7899999864432
Q ss_pred CCCceEEEEECCC
Q 016413 194 GPTSRTFVLDSET 206 (390)
Q Consensus 194 ~~~~~v~~yd~~~ 206 (390)
.+++|.+...|
T Consensus 99 --~~~~w~l~~~t 109 (398)
T PLN02772 99 --DDSIWFLEVDT 109 (398)
T ss_pred --ccceEEEEcCC
Confidence 36677776655
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.39 E-value=1.9e-05 Score=69.43 Aligned_cols=152 Identities=13% Similarity=0.205 Sum_probs=96.6
Q ss_pred eEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEcc-CCCCCCCce
Q 016413 198 RTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI-PIPRGGPHR 276 (390)
Q Consensus 198 ~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~~~~~~ 276 (390)
.--.||+.+++++.+.-....-+...+..-++++.+.||.... ...+..|+.. . +..+..|.+.. .|..+|-.+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~--~-~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPC--T-SDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecC--C-CCCCCCceECcccccCCCccc
Confidence 3457999999999886443333333344558999999998652 3345555521 0 12356898875 488888877
Q ss_pred eEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCCC------CCeEECCCC--CCCCCcceeEEEEEC
Q 016413 277 ACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDE------MKWKVLPPM--PKPNSHIECAWVIVN 347 (390)
Q Consensus 277 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~------~~W~~~~~~--~~~~~~~~~~~~~~~ 347 (390)
++..+ +|+++|+||..... .+.+.+. ..|..+... ..+........+.-+
T Consensus 122 T~~~L~DG~vlIvGG~~~~t---------------------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPd 180 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPT---------------------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPD 180 (243)
T ss_pred cceECCCCCEEEEeCcCCCc---------------------ccccCCccCCCCceeeecchhhhccCccccCceEEEcCC
Confidence 77655 89999999987431 2222221 122222211 123333344456779
Q ss_pred CEEEEEcCCCCCCCcceeeEEeeeEEEeecCccce-eeccCCC
Q 016413 348 NSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVI-IYHYRPP 389 (390)
Q Consensus 348 ~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W-~~v~~~P 389 (390)
|+|++++... ..+||+.++++ ..++.+|
T Consensus 181 G~lFi~an~~--------------s~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 181 GNLFIFANRG--------------SIIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred CCEEEEEcCC--------------cEEEeCCCCeEEeeCCCCC
Confidence 9999998853 55889999977 6788887
No 47
>PLN02772 guanylate kinase
Probab=98.37 E-value=2e-06 Score=80.27 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=60.0
Q ss_pred CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC---CCCCCCCCceEEEE-CCEEEEEccCCC
Q 016413 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLW-RGRLHVMGGSKE 239 (390)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~ 239 (390)
++..++++.+++++||+||.+... ...+.+++||..+.+|.... +.|.+|.+|+++++ +++|+|+++...
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~--~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGN--TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCc--cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence 477899999999999999976643 24789999999999998875 67899999999988 679999997654
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.36 E-value=0.0001 Score=65.18 Aligned_cols=181 Identities=14% Similarity=0.225 Sum_probs=109.6
Q ss_pred cccccccCCCCeEECCCCCCcCC--Cc--eEEEEC----C-EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCC
Q 016413 98 TFADLPAPDLEWEQMPSAPVPRL--DG--AAIQIK----N-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA 168 (390)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~R~--~~--~~~~~~----~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~ 168 (390)
.+...||.+.+|..+|+.+.++. .. ....++ + ||..+....... ....+++|+..+++|+.+...+....
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCcc
Confidence 68889999999999987554321 11 111222 2 566665432111 23468999999999999874333211
Q ss_pred CcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCC----CceEEEECCEEEEEccCCCCCCCC
Q 016413 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY----SPATQLWRGRLHVMGGSKENRHTP 244 (390)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~ 244 (390)
... ..+.++|.||-+.-..... ....+..||..+.+|+..-++|..+. ...++.++|+|.++..... ..
T Consensus 94 ~~~-~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~---~~ 166 (230)
T TIGR01640 94 LKS-RGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD---TN 166 (230)
T ss_pred ccC-CeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCC---CC
Confidence 122 2667899999987432211 12379999999999995223443322 3457788999998865432 13
Q ss_pred CcceEEeeeeccccccCCeEEccCCC-----CCC--CceeEEEECCEEEEEcC
Q 016413 245 GLEHWSIAVKDGKALEKAWRTEIPIP-----RGG--PHRACFVFNDRLFVVGG 290 (390)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~W~~~~~~p-----~~~--~~~~~~~~~~~iyv~GG 290 (390)
.++.|.++ ++ ....|++.-.++ ... .....+..+++|++.-.
T Consensus 167 ~~~IWvl~--d~--~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 167 NFDLWVLN--DA--GKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred cEEEEEEC--CC--CCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 47778764 22 234599863222 111 12355777889888765
No 49
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.35 E-value=0.00013 Score=64.68 Aligned_cols=198 Identities=14% Similarity=0.124 Sum_probs=111.7
Q ss_pred CeEEEEeCCCCceeecCCCCCCC---CCcceEEEEe----CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCC
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDM---AHSHLGVVSD----GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS 217 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~---~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 217 (390)
..+.++||.|.+|..+++.+.+. .+...+.... +-||..+...... .....+++|+..++.|+.+...+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN---RNQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC---CCCccEEEEEeCCCCccccccCCC
Confidence 35899999999999997644321 1111111111 1245555432111 124578999999999999874332
Q ss_pred C-CCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCC----CceeEEEECCEEEEEcCCC
Q 016413 218 P-RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG----PHRACFVFNDRLFVVGGQE 292 (390)
Q Consensus 218 ~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~----~~~~~~~~~~~iyv~GG~~ 292 (390)
. ......+.++|.||-+.-.........+-. ||..+++|....++|... .....+.++|+|.++....
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Ivs-------FDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 163 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKTNPDYFIVS-------FDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKK 163 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCCCCcEEEEE-------EEcccceEeeeeecCccccccccceEEEEECCEEEEEEecC
Confidence 1 112236788999999875332111112333 335789999533334322 1346778889998876543
Q ss_pred CCCCCCCCCCccccccccceecCcEEeeC-C-CCCeEECCCCC---CCCCc--ceeEEEEECCEEEEEcCCCCCCCccee
Q 016413 293 GDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D-EMKWKVLPPMP---KPNSH--IECAWVIVNNSIIITGGTTEKHPMTKR 365 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~-~~~W~~~~~~~---~~~~~--~~~~~~~~~~~l~v~GG~~~~~~~~~~ 365 (390)
... .-+||+.+ . ..+|+++-.++ .+... .....+..+|+|++.... ...
T Consensus 164 ~~~------------------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~----- 219 (230)
T TIGR01640 164 DTN------------------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP----- 219 (230)
T ss_pred CCC------------------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc-----
Confidence 211 12588886 3 45899754333 11111 113335667888887753 111
Q ss_pred eEEeeeEEEeecCcc
Q 016413 366 MILVGEVFQFHLDSL 380 (390)
Q Consensus 366 ~~~~~~v~~yd~~~~ 380 (390)
.-+..||+++|
T Consensus 220 ----~~~~~y~~~~~ 230 (230)
T TIGR01640 220 ----FYIFYYNVGEN 230 (230)
T ss_pred ----eEEEEEeccCC
Confidence 13889998875
No 50
>PF13854 Kelch_5: Kelch motif
Probab=98.33 E-value=1.3e-06 Score=54.72 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=33.0
Q ss_pred CCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413 166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (390)
Q Consensus 166 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (390)
|.+|..|++++++++|||+||.+. ......+++|+||+.+
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence 346999999999999999999985 1124589999999875
No 51
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.02 E-value=0.00058 Score=59.98 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=93.8
Q ss_pred EEE-EecCCCCCCCCCeEEEEeCCCCc--------e---eecCCCCCCCCCcceEEEEeC----CEEEEEeceeCCCC--
Q 016413 131 FYV-FAGYGSLDYVHSHVDVYNFTDNK--------W---VDRFDMPKDMAHSHLGVVSDG----RYIYIVSGQYGPQC-- 192 (390)
Q Consensus 131 lyv-~GG~~~~~~~~~~v~~yd~~~~~--------W---~~~~~l~~~~~r~~~~~~~~~----~~iyv~GG~~~~~~-- 192 (390)
.|+ -||...+....+++++....+.. . +.+.++|. +|++|++.++. ....+|||..--..
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 454 48888777777888887665432 1 12345565 79999987752 35778999742110
Q ss_pred ---------CCCCceEEEEECCCCCeEe--CCCCCCCCCCceEEEECCEEEEEccCCCCC--CCCCcceEEeeeeccccc
Q 016413 193 ---------RGPTSRTFVLDSETRKWDS--IPPLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAVKDGKAL 259 (390)
Q Consensus 193 ---------~~~~~~v~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~~~~~~~~ 259 (390)
......|+..|++-.-.+. ++.+..+.+.|.+..-++.+|++||+.... ..+...+..++..-.+
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGS-- 195 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGS-- 195 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCC--
Confidence 0113567888888776643 456777888999999999999999986543 2333333333211111
Q ss_pred cCCeEEccCCCCCCCceeEEEE---CCEEEEEcCCCCC
Q 016413 260 EKAWRTEIPIPRGGPHRACFVF---NDRLFVVGGQEGD 294 (390)
Q Consensus 260 ~~~W~~~~~~p~~~~~~~~~~~---~~~iyv~GG~~~~ 294 (390)
-.....-++....-.++++. .++.+|+||+..+
T Consensus 196 --P~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 196 --PAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred --ceeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence 11111223333332233322 3678899999754
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.68 E-value=0.031 Score=53.76 Aligned_cols=254 Identities=14% Similarity=0.145 Sum_probs=128.5
Q ss_pred HHhhccEEEEecCCCCCCCccccceeeeeccCCCc--eEeecCCCCCcc-----ccccceEEEecCCCchhHHHhhhccc
Q 016413 28 AALIADFMWASSSSSFSSSSAHLSVASNWALEKSG--VVVIPHVNATKI-----DRQRESVAVIDKKGQDAERFLSATFA 100 (390)
Q Consensus 28 ~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~--W~~l~~~~~~p~-----~r~~~~~~~~~~~~~~~~~~~~~~~~ 100 (390)
.++.++.+|+.... + .+.++|..+.+ |..-..-..... .+...+.++.++.-... ..+..++
T Consensus 65 Pvv~~~~vy~~~~~--g-------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~--~~~g~l~ 133 (394)
T PRK11138 65 PAVAYNKVYAADRA--G-------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIG--SEKGQVY 133 (394)
T ss_pred cEEECCEEEEECCC--C-------eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEE--cCCCEEE
Confidence 35678888887643 3 67889987654 865221110000 01111122222211111 1233678
Q ss_pred ccccCCC--CeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcceEEEE
Q 016413 101 DLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVS 176 (390)
Q Consensus 101 ~~~~~~~--~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~~~~~ 176 (390)
.+|..+. .|+.-.+-+ ...+.++.++.||+..+. ..+..+|+++.+ |+.-...+....+...+-++
T Consensus 134 ald~~tG~~~W~~~~~~~---~~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v 203 (394)
T PRK11138 134 ALNAEDGEVAWQTKVAGE---ALSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT 203 (394)
T ss_pred EEECCCCCCcccccCCCc---eecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEE
Confidence 8887654 686532211 122335568888875321 358999998765 87643322111122233445
Q ss_pred eCCEEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCC--------CCCceEEEECCEEEEEccCCCCCCCCCc
Q 016413 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSP--------RYSPATQLWRGRLHVMGGSKENRHTPGL 246 (390)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 246 (390)
.++.+|+..+ ...+..+|+++. .|+.-...|.. ....+-++.++.+|+.+.. ..+
T Consensus 204 ~~~~v~~~~~---------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~------g~l 268 (394)
T PRK11138 204 AFGGAIVGGD---------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN------GNL 268 (394)
T ss_pred ECCEEEEEcC---------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC------CeE
Confidence 6777776433 245777887765 48753222211 1123345678899986521 233
Q ss_pred ceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCC-
Q 016413 247 EHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM- 324 (390)
Q Consensus 247 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~- 324 (390)
.++|. ......|+.... .. ...++.+++||+.... ..++.+| .+.
T Consensus 269 ~ald~-----~tG~~~W~~~~~--~~---~~~~~~~~~vy~~~~~-----------------------g~l~ald~~tG~ 315 (394)
T PRK11138 269 VALDL-----RSGQIVWKREYG--SV---NDFAVDGGRIYLVDQN-----------------------DRVYALDTRGGV 315 (394)
T ss_pred EEEEC-----CCCCEEEeecCC--Cc---cCcEEECCEEEEEcCC-----------------------CeEEEEECCCCc
Confidence 44442 123345875321 11 1356778999987532 1388888 433
Q ss_pred -CeEECCCCCCCCCcceeEEEEECCEEEEEc
Q 016413 325 -KWKVLPPMPKPNSHIECAWVIVNNSIIITG 354 (390)
Q Consensus 325 -~W~~~~~~~~~~~~~~~~~~~~~~~l~v~G 354 (390)
.|+.-. +.. +.. .+.++.++.||+..
T Consensus 316 ~~W~~~~-~~~-~~~--~sp~v~~g~l~v~~ 342 (394)
T PRK11138 316 ELWSQSD-LLH-RLL--TAPVLYNGYLVVGD 342 (394)
T ss_pred EEEcccc-cCC-Ccc--cCCEEECCEEEEEe
Confidence 686421 111 111 22356788888753
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.64 E-value=0.0057 Score=57.40 Aligned_cols=128 Identities=24% Similarity=0.312 Sum_probs=82.7
Q ss_pred eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCc--ceEEeeee
Q 016413 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGL--EHWSIAVK 254 (390)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~--~~~~~~~~ 254 (390)
.+++|+.++.. ....+||.++..=...+.|+.+.....++.++++||++............ ..|+...+
T Consensus 75 ~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 75 HGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred cCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecc
Confidence 58999998642 34789999998888888888777777888889999999876433211110 13333222
Q ss_pred c------cccccCCeEEccCCCCCCC-------ceeEEEE-CCEEEE-EcCCCCCCCCCCCCCccccccccceecCcEEe
Q 016413 255 D------GKALEKAWRTEIPIPRGGP-------HRACFVF-NDRLFV-VGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM 319 (390)
Q Consensus 255 ~------~~~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~iyv-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (390)
+ .....-.|+.+++.|.... -.+.+++ +..|+| .-|... -.|.
T Consensus 146 ~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~----------------------GTys 203 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRW----------------------GTYS 203 (342)
T ss_pred ccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCce----------------------EEEE
Confidence 2 1123446888877654332 2345666 777888 444311 1899
Q ss_pred eC-CCCCeEECCCCCCC
Q 016413 320 LD-DEMKWKVLPPMPKP 335 (390)
Q Consensus 320 yd-~~~~W~~~~~~~~~ 335 (390)
|| .+.+|+...+-..|
T Consensus 204 fDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 204 FDTESHEWRKHGDWMLP 220 (342)
T ss_pred EEcCCcceeeccceecC
Confidence 99 77899999854333
No 54
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.04 E-value=0.023 Score=50.24 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=82.9
Q ss_pred CchhHHHhhhcccccccCCCC--------e---EECCCCCCcCCCceEEEEC--C--EEEEEecCCCCC-----------
Q 016413 88 GQDAERFLSATFADLPAPDLE--------W---EQMPSAPVPRLDGAAIQIK--N--LFYVFAGYGSLD----------- 141 (390)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~--------W---~~~~~~~~~R~~~~~~~~~--~--~lyv~GG~~~~~----------- 141 (390)
|....+.++..+|........ . .-+..+|.+|++|++-++. + -+.+|||+.-..
T Consensus 46 GrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNs 125 (337)
T PF03089_consen 46 GRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNS 125 (337)
T ss_pred CcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcce
Confidence 444444555566665443332 1 1124689999999997662 3 488889974211
Q ss_pred --CCCCeEEEEeCCCCceee--cCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC---CCeEeCCC
Q 016413 142 --YVHSHVDVYNFTDNKWVD--RFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET---RKWDSIPP 214 (390)
Q Consensus 142 --~~~~~v~~yd~~~~~W~~--~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~---~~W~~~~~ 214 (390)
.....|+..|++-.-.+. ++.+.. ..++|.+..-++.+|++||..-....+ -..+++.-.+- .-.-...-
T Consensus 126 VvDC~P~VfLiDleFGC~tah~lpEl~d--G~SFHvslar~D~VYilGGHsl~sd~R-pp~l~rlkVdLllGSP~vsC~v 202 (337)
T PF03089_consen 126 VVDCPPQVFLIDLEFGCCTAHTLPELQD--GQSFHVSLARNDCVYILGGHSLESDSR-PPRLYRLKVDLLLGSPAVSCTV 202 (337)
T ss_pred eccCCCeEEEEeccccccccccchhhcC--CeEEEEEEecCceEEEEccEEccCCCC-CCcEEEEEEeecCCCceeEEEE
Confidence 123456777776554432 344444 466777778899999999986544312 23344443221 11111112
Q ss_pred CCCCCCCceEEE---ECCEEEEEccCCCC
Q 016413 215 LPSPRYSPATQL---WRGRLHVMGGSKEN 240 (390)
Q Consensus 215 ~p~~r~~~~~~~---~~~~iyv~GG~~~~ 240 (390)
++.+.+-.++.+ -.++..|+||+..+
T Consensus 203 l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 203 LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 333333223222 24688999998654
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.95 E-value=0.26 Score=47.28 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=74.6
Q ss_pred eEEEECCEEEEEecCCCCCCCCCeEEEEeCCCC--ceeecCCCCC-C-----CCCcceEEEEeCCEEEEEeceeCCCCCC
Q 016413 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPK-D-----MAHSHLGVVSDGRYIYIVSGQYGPQCRG 194 (390)
Q Consensus 123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~l~~-~-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 194 (390)
+.++.+++||+.... ..+.+||..+. .|+.-..-.. . ..+...+.++.+++||+.+.
T Consensus 64 sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------- 128 (394)
T PRK11138 64 HPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------- 128 (394)
T ss_pred ccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC--------
Confidence 446679999997542 24888998765 4875321100 0 01223345677889987532
Q ss_pred CCceEEEEECCCC--CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCC-
Q 016413 195 PTSRTFVLDSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR- 271 (390)
Q Consensus 195 ~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~- 271 (390)
...+.++|.++. .|+.-.+ .+ ...+-++.++.+|+..+. ..+..+|. +.....|+.....|.
T Consensus 129 -~g~l~ald~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~~------g~l~ald~-----~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 129 -KGQVYALNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTSN------GMLQALNE-----SDGAVKWTVNLDVPSL 193 (394)
T ss_pred -CCEEEEEECCCCCCcccccCC--Cc-eecCCEEECCEEEEECCC------CEEEEEEc-----cCCCEeeeecCCCCcc
Confidence 346889998664 5976432 11 122335668888876431 23444442 123445877543331
Q ss_pred -CCCceeEEEECCEEEEEcC
Q 016413 272 -GGPHRACFVFNDRLFVVGG 290 (390)
Q Consensus 272 -~~~~~~~~~~~~~iyv~GG 290 (390)
.+...+-++.++.+|+..+
T Consensus 194 ~~~~~~sP~v~~~~v~~~~~ 213 (394)
T PRK11138 194 TLRGESAPATAFGGAIVGGD 213 (394)
T ss_pred cccCCCCCEEECCEEEEEcC
Confidence 1111234556777766443
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.76 E-value=0.35 Score=42.50 Aligned_cols=207 Identities=19% Similarity=0.277 Sum_probs=112.1
Q ss_pred cccccccCCC--CeEECCCCCCcCCCce--EEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcc
Q 016413 98 TFADLPAPDL--EWEQMPSAPVPRLDGA--AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSH 171 (390)
Q Consensus 98 ~~~~~~~~~~--~W~~~~~~~~~R~~~~--~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~ 171 (390)
.+..+|+.+. .|+.- +........ .+..++.+|+..+ ...+.++|+.+.+ |+.- ++. +..
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~--~~~---~~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFD--LPG---PIS 69 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEE--CSS---CGG
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEee--ccc---ccc
Confidence 4556666444 57652 211233333 3347889998842 2469999997775 6653 233 222
Q ss_pred eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC--CeE-eCCCCCCC--CCCceEEEECCEEEEEccCCCCCCCCCc
Q 016413 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWD-SIPPLPSP--RYSPATQLWRGRLHVMGGSKENRHTPGL 246 (390)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~-~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 246 (390)
...+..++.||+... .+.+..+|..+. .|+ .....+.. +......+.++.+|+... ...+
T Consensus 70 ~~~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l 134 (238)
T PF13360_consen 70 GAPVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKL 134 (238)
T ss_dssp SGEEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEE
T ss_pred ceeeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcE
Confidence 224778999988862 237899997665 498 44432322 233445556777777753 1223
Q ss_pred ceEEeeeeccccccCCeEEccCCCCCCC--------ceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEE
Q 016413 247 EHWSIAVKDGKALEKAWRTEIPIPRGGP--------HRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVY 318 (390)
Q Consensus 247 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~--------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (390)
..++. +.....|+.....+.... ....+..++.+|+..+... +.
T Consensus 135 ~~~d~-----~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-----------------------~~ 186 (238)
T PF13360_consen 135 VALDP-----KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-----------------------VV 186 (238)
T ss_dssp EEEET-----TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-----------------------EE
T ss_pred EEEec-----CCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-----------------------EE
Confidence 33332 123445776544443211 1233445678888776431 45
Q ss_pred eeC-CCC--CeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCcc
Q 016413 319 MLD-DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL 380 (390)
Q Consensus 319 ~yd-~~~--~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 380 (390)
.+| .+. .|+.. +.. ........++.||+.. .+ . .++++|+++.
T Consensus 187 ~~d~~tg~~~w~~~--~~~----~~~~~~~~~~~l~~~~-~~--~----------~l~~~d~~tG 232 (238)
T PF13360_consen 187 AVDLATGEKLWSKP--ISG----IYSLPSVDGGTLYVTS-SD--G----------RLYALDLKTG 232 (238)
T ss_dssp EEETTTTEEEEEEC--SS-----ECECEECCCTEEEEEE-TT--T----------EEEEEETTTT
T ss_pred EEECCCCCEEEEec--CCC----ccCCceeeCCEEEEEe-CC--C----------EEEEEECCCC
Confidence 557 554 48443 222 1111355577777776 22 1 4899999886
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.53 E-value=0.78 Score=43.68 Aligned_cols=210 Identities=13% Similarity=0.115 Sum_probs=104.0
Q ss_pred HHHhhccEEEEecCCCCCCCccccceeeeeccCCCc--eEe-ecCCCCCccccccceEEEecCCCchhHHHhhhcccccc
Q 016413 27 GAALIADFMWASSSSSFSSSSAHLSVASNWALEKSG--VVV-IPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLP 103 (390)
Q Consensus 27 ~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~--W~~-l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (390)
+.++.++.+|+.+. ++ .+.+||+.+.+ |.. ++... ..+.++.++.-.. ...+..++.+|
T Consensus 60 ~p~v~~~~v~v~~~--~g-------~v~a~d~~tG~~~W~~~~~~~~-------~~~p~v~~~~v~v--~~~~g~l~ald 121 (377)
T TIGR03300 60 QPAVAGGKVYAADA--DG-------TVVALDAETGKRLWRVDLDERL-------SGGVGADGGLVFV--GTEKGEVIALD 121 (377)
T ss_pred ceEEECCEEEEECC--CC-------eEEEEEccCCcEeeeecCCCCc-------ccceEEcCCEEEE--EcCCCEEEEEE
Confidence 33566777776553 23 68899977654 764 22210 1111111111000 01233678888
Q ss_pred cCCC--CeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCC--ceeecCCCCCCCCCcceEEEEeCC
Q 016413 104 APDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMAHSHLGVVSDGR 179 (390)
Q Consensus 104 ~~~~--~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~~r~~~~~~~~~~ 179 (390)
..+. .|+.-..- . ...+.++.++++|+..+ + ..+..+|+++. .|+.-...+....+...+.++.++
T Consensus 122 ~~tG~~~W~~~~~~--~-~~~~p~v~~~~v~v~~~-~------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~ 191 (377)
T TIGR03300 122 AEDGKELWRAKLSS--E-VLSPPLVANGLVVVRTN-D------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADG 191 (377)
T ss_pred CCCCcEeeeeccCc--e-eecCCEEECCEEEEECC-C------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECC
Confidence 7554 58653221 1 11233456778877532 1 34889998765 487533222100122233455667
Q ss_pred EEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCCC--------CCceEEEECCEEEEEccCCCCCCCCCcceE
Q 016413 180 YIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPR--------YSPATQLWRGRLHVMGGSKENRHTPGLEHW 249 (390)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 249 (390)
.+|+ |.. ...+..+|+.+. .|+.-...+... ...+.++.++.+|+.... ..+.++
T Consensus 192 ~v~~-~~~--------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~ 256 (377)
T TIGR03300 192 GVLV-GFA--------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAAL 256 (377)
T ss_pred EEEE-ECC--------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEE
Confidence 5554 321 245788888764 486532222111 122344568888886431 234444
Q ss_pred EeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEc
Q 016413 250 SIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG 289 (390)
Q Consensus 250 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~G 289 (390)
+.. .....|+.-. +. ..+.++.+++||+..
T Consensus 257 d~~-----tG~~~W~~~~--~~---~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 257 DLR-----SGRVLWKRDA--SS---YQGPAVDDNRLYVTD 286 (377)
T ss_pred ECC-----CCcEEEeecc--CC---ccCceEeCCEEEEEC
Confidence 431 2344576531 11 124456788998875
No 58
>PRK13684 Ycf48-like protein; Provisional
Probab=96.31 E-value=0.96 Score=42.38 Aligned_cols=197 Identities=11% Similarity=0.020 Sum_probs=93.2
Q ss_pred CCCceEeecCCCCCccccccceEEEecCC-CchhHHHhhhcccccccCCCCeEECCC-CCCcCC-CceEEEECCEEEEEe
Q 016413 59 EKSGVVVIPHVNATKIDRQRESVAVIDKK-GQDAERFLSATFADLPAPDLEWEQMPS-APVPRL-DGAAIQIKNLFYVFA 135 (390)
Q Consensus 59 ~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~R~-~~~~~~~~~~lyv~G 135 (390)
....|+++.. +.. ..-.+++..+.. +..... ...++.-.-...+|++... ++..+. ..++...++..|+.|
T Consensus 33 ~~~~W~~~~~-~~~---~~l~~v~F~d~~~g~avG~--~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G 106 (334)
T PRK13684 33 SSSPWQVIDL-PTE---ANLLDIAFTDPNHGWLVGS--NRTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVG 106 (334)
T ss_pred cCCCcEEEec-CCC---CceEEEEEeCCCcEEEEEC--CCEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeC
Confidence 4567977753 221 233444444332 221111 1244444445678998753 332222 223333455566664
Q ss_pred cCCCCCCCCCeEEEEeCCCCceeecCCC-CCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413 136 GYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (390)
Q Consensus 136 G~~~~~~~~~~v~~yd~~~~~W~~~~~l-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (390)
. . ..+++=+-...+|+.+... ..|. ......+.-++.+|+.|. ...+++-+-.-.+|+.+..
T Consensus 107 ~-~------g~i~~S~DgG~tW~~~~~~~~~~~-~~~~i~~~~~~~~~~~g~---------~G~i~~S~DgG~tW~~~~~ 169 (334)
T PRK13684 107 Q-P------SLLLHTTDGGKNWTRIPLSEKLPG-SPYLITALGPGTAEMATN---------VGAIYRTTDGGKNWEALVE 169 (334)
T ss_pred C-C------ceEEEECCCCCCCeEccCCcCCCC-CceEEEEECCCcceeeec---------cceEEEECCCCCCceeCcC
Confidence 2 1 1244433345689987532 1211 112222333455666653 3446666666789999864
Q ss_pred CCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEE-EECCEEEEEcCC
Q 016413 215 LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF-VFNDRLFVVGGQ 291 (390)
Q Consensus 215 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~-~~~~~iyv~GG~ 291 (390)
.. .-..+.+....+..+++.|..+. .|.. .+....+|+.+........ .+++ .-+++++++|..
T Consensus 170 ~~-~g~~~~i~~~~~g~~v~~g~~G~-------i~~s----~~~gg~tW~~~~~~~~~~l-~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 170 DA-AGVVRNLRRSPDGKYVAVSSRGN-------FYST----WEPGQTAWTPHQRNSSRRL-QSMGFQPDGNLWMLARG 234 (334)
T ss_pred CC-cceEEEEEECCCCeEEEEeCCce-------EEEE----cCCCCCeEEEeeCCCcccc-eeeeEcCCCCEEEEecC
Confidence 33 22334444445555555444321 1110 0023457988754322222 2333 346788888653
No 59
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.31 E-value=0.072 Score=48.27 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=71.8
Q ss_pred EEEecCCCCCC-CCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCe
Q 016413 132 YVFAGYGSLDY-VHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW 209 (390)
Q Consensus 132 yv~GG~~~~~~-~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 209 (390)
||-|-++.... ....+-.||+.+.+|..+..--. -.-.++.. .+++||+.|-+.-.. .....+-.||.++.+|
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~---G~V~~l~~~~~~~Llv~G~ft~~~--~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS---GTVTDLQWASNNQLLVGGNFTLNG--TNSSNLATYDFKNQTW 76 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce---EEEEEEEEecCCEEEEEEeeEECC--CCceeEEEEecCCCee
Confidence 44444444333 35679999999999998754311 11223333 478888888665443 1367789999999999
Q ss_pred EeCCC-C----CCCCCCceEEE-ECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccC
Q 016413 210 DSIPP-L----PSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP 268 (390)
Q Consensus 210 ~~~~~-~----p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 268 (390)
+.+.. . |.+........ -...+++.|... . -...+..|| ..+|+.+..
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~-~-g~~~l~~~d---------Gs~W~~i~~ 130 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA-N-GSTFLMKYD---------GSSWSSIGS 130 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEeceec-C-CCceEEEEc---------CCceEeccc
Confidence 98875 2 33322222221 234678777652 1 123344453 678887644
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.27 E-value=0.12 Score=48.62 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=71.9
Q ss_pred cccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCC----CeEEEE--eC--------CCCceeecCCC
Q 016413 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVH----SHVDVY--NF--------TDNKWVDRFDM 163 (390)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~----~~v~~y--d~--------~~~~W~~~~~l 163 (390)
....||..+..-...|.|+.+.....++.++++||++.......... ...|.+ ++ ..-.|+.+++.
T Consensus 87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P 166 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP 166 (342)
T ss_pred CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence 47788988887777788887777777888899999998764332110 144554 42 23367887664
Q ss_pred CCCCCCc-----ceEEEEe-CCEEEE-EeceeCCCCCCCCceEEEEECCCCCeEeCCC--CCC
Q 016413 164 PKDMAHS-----HLGVVSD-GRYIYI-VSGQYGPQCRGPTSRTFVLDSETRKWDSIPP--LPS 217 (390)
Q Consensus 164 ~~~~~r~-----~~~~~~~-~~~iyv-~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~p~ 217 (390)
|...... -.+-+++ +..|+| +-|.. .-.+.||..+.+|+++.+ ||.
T Consensus 167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred CccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccceecCc
Confidence 4322111 2333444 778888 33211 247899999999999985 554
No 61
>PRK13684 Ycf48-like protein; Provisional
Probab=96.10 E-value=0.99 Score=42.31 Aligned_cols=203 Identities=10% Similarity=0.125 Sum_probs=99.8
Q ss_pred ccccccCCCCeEECCCC-CCcCCCceEEEEC-CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE
Q 016413 99 FADLPAPDLEWEQMPSA-PVPRLDGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (390)
Q Consensus 99 ~~~~~~~~~~W~~~~~~-~~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~ 176 (390)
++.-.-...+|+++... ..+.....+..++ +.+++.|.. ..+++=+-..++|+.+..-.. -..+.+..
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~---g~~~~i~~ 180 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDAA---GVVRNLRR 180 (334)
T ss_pred EEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCCc---ceEEEEEE
Confidence 44444445699988532 2222333344443 446665532 235665556789998754322 23344454
Q ss_pred eCCEEEEEeceeCCCCCCCCceEEE-EECCCCCeEeCCCCCCCCCCceEEE-ECCEEEEEccCCCCCCCCCcceEEeeee
Q 016413 177 DGRYIYIVSGQYGPQCRGPTSRTFV-LDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (390)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~-yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (390)
..+..|++.|..+ .++. .|....+|+.+.. +..+...+++. -+++++++|.... ..+..
T Consensus 181 ~~~g~~v~~g~~G--------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~-------~~~~s--- 241 (334)
T PRK13684 181 SPDGKYVAVSSRG--------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQ-------IRFND--- 241 (334)
T ss_pred CCCCeEEEEeCCc--------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCE-------EEEcc---
Confidence 4444455444322 2232 2444567998853 44444444443 4678888874321 11100
Q ss_pred ccccccCCeEEccCC-CCCCC-ceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEe-eCCCCCeEECC
Q 016413 255 DGKALEKAWRTEIPI-PRGGP-HRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM-LDDEMKWKVLP 330 (390)
Q Consensus 255 ~~~~~~~~W~~~~~~-p~~~~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-yd~~~~W~~~~ 330 (390)
+....+|+.+... ..... .++++.. ++.+|++|.... ++. .|...+|+.++
T Consensus 242 --~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~-----------------------v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 242 --PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGT-----------------------LLVSKDGGKTWEKDP 296 (334)
T ss_pred --CCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCe-----------------------EEEeCCCCCCCeECC
Confidence 0245688865321 11111 1233333 567888776421 333 33567999975
Q ss_pred CC-CCCCCcceeEEEEECCEEEEEcCC
Q 016413 331 PM-PKPNSHIECAWVIVNNSIIITGGT 356 (390)
Q Consensus 331 ~~-~~~~~~~~~~~~~~~~~l~v~GG~ 356 (390)
.. ..+.... ..+...++++++.|..
T Consensus 297 ~~~~~~~~~~-~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 297 VGEEVPSNFY-KIVFLDPEKGFVLGQR 322 (334)
T ss_pred cCCCCCcceE-EEEEeCCCceEEECCC
Confidence 32 2222211 2223446777777653
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.88 E-value=1.7 Score=41.35 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=70.3
Q ss_pred ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceE
Q 016413 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT 199 (390)
Q Consensus 122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 199 (390)
.+.++.+++||+.+.. ..+.++|+.+.+ |+.- ++. +...+.++.++.+|+... ...+
T Consensus 59 ~~p~v~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~--~~~---~~~~~p~v~~~~v~v~~~---------~g~l 117 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD-------GTVVALDAETGKRLWRVD--LDE---RLSGGVGADGGLVFVGTE---------KGEV 117 (377)
T ss_pred cceEEECCEEEEECCC-------CeEEEEEccCCcEeeeec--CCC---CcccceEEcCCEEEEEcC---------CCEE
Confidence 3446668888886532 248999987654 8653 222 112234556788886432 3468
Q ss_pred EEEECCCC--CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCC--CCCc
Q 016413 200 FVLDSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR--GGPH 275 (390)
Q Consensus 200 ~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~--~~~~ 275 (390)
+.+|+.+. .|+.-.+ .. ...+.++.++.+|+..+ ...+..+|.. .....|+.....+. .+..
T Consensus 118 ~ald~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~------~g~l~a~d~~-----tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS--SE-VLSPPLVANGLVVVRTN------DGRLTALDAA-----TGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred EEEECCCCcEeeeeccC--ce-eecCCEEECCEEEEECC------CCeEEEEEcC-----CCceeeEEccCCCceeecCC
Confidence 89998654 4876432 11 11233456788777543 1234444421 23446876433221 1112
Q ss_pred eeEEEECCEEEEEcC
Q 016413 276 RACFVFNDRLFVVGG 290 (390)
Q Consensus 276 ~~~~~~~~~iyv~GG 290 (390)
.+.+..++.+| +|.
T Consensus 184 ~sp~~~~~~v~-~~~ 197 (377)
T TIGR03300 184 ASPVIADGGVL-VGF 197 (377)
T ss_pred CCCEEECCEEE-EEC
Confidence 24455666554 444
No 63
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.74 E-value=0.27 Score=44.59 Aligned_cols=121 Identities=16% Similarity=0.188 Sum_probs=69.0
Q ss_pred EEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE-CCEEEEEccCCCCC-CCCCcceEEeeeeccccc
Q 016413 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENR-HTPGLEHWSIAVKDGKAL 259 (390)
Q Consensus 182 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~~~~ 259 (390)
||-|-++..+. -++..+..||+.+.+|..+..--.+ .-.++... +++||+.|-..... .....-.|+ ..
T Consensus 2 ~VGG~F~~aGs-L~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd-------~~ 72 (281)
T PF12768_consen 2 YVGGSFTSAGS-LPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYD-------FK 72 (281)
T ss_pred EEeeecCCCCC-cCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEe-------cC
Confidence 44343443332 3578999999999999998743222 12233333 77888888654333 233344455 57
Q ss_pred cCCeEEccC-----CCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCCCCCeEECCC
Q 016413 260 EKAWRTEIP-----IPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPP 331 (390)
Q Consensus 260 ~~~W~~~~~-----~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~ 331 (390)
+.+|+.+.. +|.+......... .+.+++.|..... ..-+..| ...+|..+..
T Consensus 73 ~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------------~~~l~~~-dGs~W~~i~~ 130 (281)
T PF12768_consen 73 NQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG-------------------STFLMKY-DGSSWSSIGS 130 (281)
T ss_pred CCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC-------------------CceEEEE-cCCceEeccc
Confidence 999988765 3443321112222 3457777775221 1237777 5558988865
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.56 E-value=1.5 Score=38.41 Aligned_cols=175 Identities=23% Similarity=0.294 Sum_probs=94.4
Q ss_pred eEEEEeCCCCc--eeecCCCCCCCCCcceE--EEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCCC
Q 016413 146 HVDVYNFTDNK--WVDRFDMPKDMAHSHLG--VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPR 219 (390)
Q Consensus 146 ~v~~yd~~~~~--W~~~~~l~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r 219 (390)
.+.++|+.+.+ |+. .+..+ ..... .+..++.+|+..+ ...+.++|+.+. .|+.-. +.+-
T Consensus 4 ~l~~~d~~tG~~~W~~--~~~~~--~~~~~~~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~W~~~~--~~~~ 68 (238)
T PF13360_consen 4 TLSALDPRTGKELWSY--DLGPG--IGGPVATAVPDGGRVYVASG---------DGNLYALDAKTGKVLWRFDL--PGPI 68 (238)
T ss_dssp EEEEEETTTTEEEEEE--ECSSS--CSSEEETEEEETTEEEEEET---------TSEEEEEETTTSEEEEEEEC--SSCG
T ss_pred EEEEEECCCCCEEEEE--ECCCC--CCCccceEEEeCCEEEEEcC---------CCEEEEEECCCCCEEEEeec--cccc
Confidence 47788886654 765 22211 22222 4448899999842 567999998665 477654 2221
Q ss_pred CCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeE-EccCCCC--CCCceeEEEECCEEEEEcCCCCCCC
Q 016413 220 YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR-TEIPIPR--GGPHRACFVFNDRLFVVGGQEGDFM 296 (390)
Q Consensus 220 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~p~--~~~~~~~~~~~~~iyv~GG~~~~~~ 296 (390)
. ...+..++.||+.... ..+..++. ......|+ .....+. ........+.++.+|+... .
T Consensus 69 ~-~~~~~~~~~v~v~~~~------~~l~~~d~-----~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 131 (238)
T PF13360_consen 69 S-GAPVVDGGRVYVGTSD------GSLYALDA-----KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-S---- 131 (238)
T ss_dssp G-SGEEEETTEEEEEETT------SEEEEEET-----TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-C----
T ss_pred c-ceeeecccccccccce------eeeEeccc-----CCcceeeeeccccccccccccccCceEecCEEEEEec-c----
Confidence 2 2247889999888621 13444442 13555788 4433222 1222344455677766653 2
Q ss_pred CCCCCCccccccccceecCcEEeeC-CCC--CeEECCCCCCCCC------cceeEEEEECCEEEEEcCCCCCCCcceeeE
Q 016413 297 AKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLPPMPKPNS------HIECAWVIVNNSIIITGGTTEKHPMTKRMI 367 (390)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~~~~~~~~------~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 367 (390)
..++.+| .+. .|+.-...+.... ......+..++.+|+..+...
T Consensus 132 ------------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~--------- 184 (238)
T PF13360_consen 132 ------------------GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR--------- 184 (238)
T ss_dssp ------------------SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS---------
T ss_pred ------------------CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe---------
Confidence 1389999 543 7877433332111 112333445678888765431
Q ss_pred EeeeEEEeecCccc--ee
Q 016413 368 LVGEVFQFHLDSLV--II 383 (390)
Q Consensus 368 ~~~~v~~yd~~~~~--W~ 383 (390)
+..+|.++++ |+
T Consensus 185 ----~~~~d~~tg~~~w~ 198 (238)
T PF13360_consen 185 ----VVAVDLATGEKLWS 198 (238)
T ss_dssp ----EEEEETTTTEEEEE
T ss_pred ----EEEEECCCCCEEEE
Confidence 3445777765 74
No 65
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.29 E-value=3.9 Score=36.80 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=63.0
Q ss_pred EEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCc--hhHHHhhhcccccccCCCCeEE
Q 016413 34 FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQ--DAERFLSATFADLPAPDLEWEQ 111 (390)
Q Consensus 34 ~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~W~~ 111 (390)
.+|+.++. ++ .+..||+.+.+-...-..... ..+++...+... ... .....+..+|..+.+...
T Consensus 2 ~~~~s~~~-d~-------~v~~~d~~t~~~~~~~~~~~~-----~~~l~~~~dg~~l~~~~-~~~~~v~~~d~~~~~~~~ 67 (300)
T TIGR03866 2 KAYVSNEK-DN-------TISVIDTATLEVTRTFPVGQR-----PRGITLSKDGKLLYVCA-SDSDTIQVIDLATGEVIG 67 (300)
T ss_pred cEEEEecC-CC-------EEEEEECCCCceEEEEECCCC-----CCceEECCCCCEEEEEE-CCCCeEEEEECCCCcEEE
Confidence 56777766 55 788888876653222111111 112222211110 011 112356677776655433
Q ss_pred -CCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE-eCCEEEEEece
Q 016413 112 -MPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQ 187 (390)
Q Consensus 112 -~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~-~~~~iyv~GG~ 187 (390)
++....+ ..++.. ++.+|+.++.+ ..+..||+.+.+- +..++.. ....+++. -++.+++++..
T Consensus 68 ~~~~~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~--~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 68 TLPSGPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKV--LAEIPVG--VEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred eccCCCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeE--EeEeeCC--CCcceEEECCCCCEEEEEec
Confidence 2221111 122222 34566665433 3588899987542 2222211 11122332 35666666542
Q ss_pred eCCCCCCCCceEEEEECCCCC
Q 016413 188 YGPQCRGPTSRTFVLDSETRK 208 (390)
Q Consensus 188 ~~~~~~~~~~~v~~yd~~~~~ 208 (390)
+ .+.+..||..+.+
T Consensus 135 ~-------~~~~~~~d~~~~~ 148 (300)
T TIGR03866 135 T-------TNMAHFIDTKTYE 148 (300)
T ss_pred C-------CCeEEEEeCCCCe
Confidence 2 1235567776543
No 66
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.24 E-value=1.4 Score=41.89 Aligned_cols=147 Identities=8% Similarity=0.055 Sum_probs=80.0
Q ss_pred EEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCc--hhHHHhhhcccccccCCCCeEE
Q 016413 34 FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQ--DAERFLSATFADLPAPDLEWEQ 111 (390)
Q Consensus 34 ~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~W~~ 111 (390)
.|.+.+|. ++ .+..|..+.+.=..|.++... +.....+....+|. .+.......+|.||..+.+-.+
T Consensus 226 plllvaG~-d~-------~lrifqvDGk~N~~lqS~~l~---~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 226 PLLLVAGL-DG-------TLRIFQVDGKVNPKLQSIHLE---KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred ceEEEecC-CC-------cEEEEEecCccChhheeeeec---cCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 46778888 65 455554433333344443322 22222222222222 2333345578999998888777
Q ss_pred CCCCC--CcCCCceE-EEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEecee
Q 016413 112 MPSAP--VPRLDGAA-IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188 (390)
Q Consensus 112 ~~~~~--~~R~~~~~-~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~ 188 (390)
+.++- ..+..... +..++..+++-|..+ .+..+..+|+.|.. .+..+-.-...+....+..|++.||
T Consensus 295 ~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~--s~KieG~v~~~~fsSdsk~l~~~~~-- 364 (514)
T KOG2055|consen 295 LKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELIT--SFKIEGVVSDFTFSSDSKELLASGG-- 364 (514)
T ss_pred ccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhh--eeeeccEEeeEEEecCCcEEEEEcC--
Confidence 76643 12222222 334555666666553 36777778888853 3433222334444455667888887
Q ss_pred CCCCCCCCceEEEEECCCCC
Q 016413 189 GPQCRGPTSRTFVLDSETRK 208 (390)
Q Consensus 189 ~~~~~~~~~~v~~yd~~~~~ 208 (390)
...|+++|+.++.
T Consensus 365 -------~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 365 -------TGEVYVWNLRQNS 377 (514)
T ss_pred -------CceEEEEecCCcc
Confidence 4569999998874
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.06 E-value=2.6 Score=40.29 Aligned_cols=175 Identities=11% Similarity=0.145 Sum_probs=87.1
Q ss_pred ECCEEEEEecCCCCCCCCCeEEEEeCCCCcee-ecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV-DRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (390)
Q Consensus 127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 205 (390)
.++.+++.|+-+. .+-.+|..+..=+ .+..-..- -| +.++...++.|++.||+++. +-.||..
T Consensus 121 ~d~t~l~s~sDd~------v~k~~d~s~a~v~~~l~~htDY-VR-~g~~~~~~~hivvtGsYDg~--------vrl~DtR 184 (487)
T KOG0310|consen 121 QDNTMLVSGSDDK------VVKYWDLSTAYVQAELSGHTDY-VR-CGDISPANDHIVVTGSYDGK--------VRLWDTR 184 (487)
T ss_pred cCCeEEEecCCCc------eEEEEEcCCcEEEEEecCCcce-eE-eeccccCCCeEEEecCCCce--------EEEEEec
Confidence 4788999887553 1333444444421 11111111 13 22445567889999999764 5567877
Q ss_pred CC-CeEeCCCCCCCCCCceEEEE-C-CEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEE--E
Q 016413 206 TR-KWDSIPPLPSPRYSPATQLW-R-GRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF--V 280 (390)
Q Consensus 206 ~~-~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~--~ 280 (390)
.. .|.. .+..+----.++.+ + ..|...|| +.+.+||+. ..++ .+..+-.-.-.-++- .
T Consensus 185 ~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~------~G~q--ll~~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 185 SLTSRVV--ELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLT------TGGQ--LLTSMFNHNKTVTCLRLA 247 (487)
T ss_pred cCCceeE--EecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEec------CCce--ehhhhhcccceEEEEEee
Confidence 66 3432 22211111122223 2 34555555 468888872 1221 111111100001221 2
Q ss_pred ECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCCCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCC
Q 016413 281 FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTE 358 (390)
Q Consensus 281 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~ 358 (390)
-++.=++-||.++. |-+|| ...|+.+-.+..|-.-.+++ +.-++.-+++|..++
T Consensus 248 s~~~rLlS~sLD~~----------------------VKVfd-~t~~Kvv~s~~~~~pvLsia-vs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRH----------------------VKVFD-TTNYKVVHSWKYPGPVLSIA-VSPDDQTVVIGMSNG 301 (487)
T ss_pred cCCceEeecccccc----------------------eEEEE-ccceEEEEeeecccceeeEE-ecCCCceEEEecccc
Confidence 24566778887764 88886 45666666444333323333 444677777776554
No 68
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.82 E-value=3.6 Score=39.20 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=72.3
Q ss_pred CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCC-CCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD-MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (390)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 207 (390)
-.+.+.+|.+.. -.++..|-++|. .+.++-.. .+-..+..+..+....+++|. ..-++.||.++.
T Consensus 225 ~plllvaG~d~~----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~a 290 (514)
T KOG2055|consen 225 APLLLVAGLDGT----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLETA 290 (514)
T ss_pred CceEEEecCCCc----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--------ceEEEEeecccc
Confidence 468999999863 347777777776 34433220 111222223334436666664 355789999999
Q ss_pred CeEeCCCCCC--CCCCce-EEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCE
Q 016413 208 KWDSIPPLPS--PRYSPA-TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDR 284 (390)
Q Consensus 208 ~W~~~~~~p~--~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ 284 (390)
+-+++.++-. .+.... .+...+.+.++-|..+. +.... ..++.|-.-..++-..........+.+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~-----I~lLh-------akT~eli~s~KieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH-----IHLLH-------AKTKELITSFKIEGVVSDFTFSSDSKE 358 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCce-----EEeeh-------hhhhhhhheeeeccEEeeEEEecCCcE
Confidence 8888875431 112222 23445556666665432 11111 345555444344433222223333455
Q ss_pred EEEEcCCC
Q 016413 285 LFVVGGQE 292 (390)
Q Consensus 285 iyv~GG~~ 292 (390)
|+++||..
T Consensus 359 l~~~~~~G 366 (514)
T KOG2055|consen 359 LLASGGTG 366 (514)
T ss_pred EEEEcCCc
Confidence 77777753
No 69
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=93.60 E-value=5.3 Score=35.92 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=37.1
Q ss_pred CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCC
Q 016413 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (390)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 208 (390)
+++|+.++.++ .+.+||+.+++-...-..... .+ ..+....+..+|+.++. ...+..||..+.+
T Consensus 1 ~~~~~s~~~d~------~v~~~d~~t~~~~~~~~~~~~-~~-~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~~ 64 (300)
T TIGR03866 1 EKAYVSNEKDN------TISVIDTATLEVTRTFPVGQR-PR-GITLSKDGKLLYVCASD--------SDTIQVIDLATGE 64 (300)
T ss_pred CcEEEEecCCC------EEEEEECCCCceEEEEECCCC-CC-ceEECCCCCEEEEEECC--------CCeEEEEECCCCc
Confidence 35777777553 588899887764332221111 12 11222234457777642 3558889988776
Q ss_pred eEe
Q 016413 209 WDS 211 (390)
Q Consensus 209 W~~ 211 (390)
...
T Consensus 65 ~~~ 67 (300)
T TIGR03866 65 VIG 67 (300)
T ss_pred EEE
Confidence 543
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.10 E-value=5.6 Score=34.75 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=14.2
Q ss_pred CEEEEEecCCCCCCCCCeEEEEeCCCCc
Q 016413 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNK 156 (390)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~ 156 (390)
+++++.++.+ ..+..||+.+.+
T Consensus 105 ~~~~~~~~~~------~~i~~~~~~~~~ 126 (289)
T cd00200 105 GRILSSSSRD------KTIKVWDVETGK 126 (289)
T ss_pred CCEEEEecCC------CeEEEEECCCcE
Confidence 4666666633 358889987544
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.67 E-value=1.3 Score=39.33 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=58.0
Q ss_pred hcccccccCCCCeEECCCCCCcCCCceEEEE--CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC---CCCCcc
Q 016413 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHSH 171 (390)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~---~~~r~~ 171 (390)
..++.+++.+.+-..+. .+. ..+++.. ++++|+.... .+..+|+.+.+++.+...+. +..+.+
T Consensus 22 ~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~N 89 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRPN 89 (246)
T ss_dssp TEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEEE
T ss_pred CEEEEEECCCCeEEEEe-cCC---CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCCc
Confidence 36777777666443321 222 2334444 6788887542 25666999999988766531 223445
Q ss_pred eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC
Q 016413 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (390)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 213 (390)
-.++.-+|.||+.--............++++++. .+.+.+.
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 4555567888886432221110111679999998 5555543
No 72
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.25 E-value=4.6 Score=35.75 Aligned_cols=86 Identities=16% Similarity=0.119 Sum_probs=50.7
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 205 (390)
++.||+.--. ...++++|+.+.+-+.+. ++. ..+++. .++.+|+... ..+.++|+.
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~~-~~~-----~~G~~~~~~~g~l~v~~~----------~~~~~~d~~ 68 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDTGEVEVID-LPG-----PNGMAFDRPDGRLYVADS----------GGIAVVDPD 68 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEE-SSS-----EEEEEEECTTSEEEEEET----------TCEEEEETT
T ss_pred CCEEEEEEcC------CCEEEEEECCCCeEEEEe-cCC-----CceEEEEccCCEEEEEEc----------CceEEEecC
Confidence 4677877221 257999999998765532 222 223333 4788888763 234566999
Q ss_pred CCCeEeCCCCCC-----CCCCceEEEECCEEEEEc
Q 016413 206 TRKWDSIPPLPS-----PRYSPATQLWRGRLHVMG 235 (390)
Q Consensus 206 ~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~G 235 (390)
+.+++.+...+. .+..-.++--++.||+-.
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~ 103 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD 103 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence 999988875532 222222334477888864
No 73
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.92 E-value=13 Score=36.17 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=38.1
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (390)
..++++|+.+++-+.+...+. ..........+.+|++....++ ..+++++|+.+..-+.+..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g--~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG--INGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC--CccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECcc
Confidence 469999999888777765543 1222223333455655432221 3579999999887776653
No 74
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.92 E-value=10 Score=34.91 Aligned_cols=195 Identities=11% Similarity=0.116 Sum_probs=82.0
Q ss_pred CCCceEeecCCCCCccccccceEEEecCC-CchhHHHhhhcccccccCCCCeEECCC-CCCc-CC-CceEEEECCEEEEE
Q 016413 59 EKSGVVVIPHVNATKIDRQRESVAVIDKK-GQDAERFLSATFADLPAPDLEWEQMPS-APVP-RL-DGAAIQIKNLFYVF 134 (390)
Q Consensus 59 ~~~~W~~l~~~~~~p~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~~-R~-~~~~~~~~~~lyv~ 134 (390)
..+.|..+..-... .-..+...... +..... ...++.-.-...+|+.... .+.+ .. ..++...++..|++
T Consensus 4 ~~~~W~~v~l~t~~----~l~dV~F~d~~~G~~VG~--~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~iv 77 (302)
T PF14870_consen 4 SGNSWQQVSLPTDK----PLLDVAFVDPNHGWAVGA--YGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIV 77 (302)
T ss_dssp SS--EEEEE-S-SS-----EEEEEESSSS-EEEEET--TTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEE
T ss_pred cCCCcEEeecCCCC----ceEEEEEecCCEEEEEec--CCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEE
Confidence 45678887753322 22333333222 222111 1245554455679998764 2222 22 23344457889988
Q ss_pred ecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceE-EEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC
Q 016413 135 AGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG-VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (390)
Q Consensus 135 GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 213 (390)
|-.. -+.+-.-...+|+.++- +.+.+...+. .+.-++.+.++|. ...+++-.-.-.+|+.+.
T Consensus 78 G~~g-------~ll~T~DgG~tW~~v~l-~~~lpgs~~~i~~l~~~~~~l~~~---------~G~iy~T~DgG~tW~~~~ 140 (302)
T PF14870_consen 78 GEPG-------LLLHTTDGGKTWERVPL-SSKLPGSPFGITALGDGSAELAGD---------RGAIYRTTDGGKTWQAVV 140 (302)
T ss_dssp EETT-------EEEEESSTTSS-EE-----TT-SS-EEEEEEEETTEEEEEET---------T--EEEESSTTSSEEEEE
T ss_pred cCCc-------eEEEecCCCCCcEEeec-CCCCCCCeeEEEEcCCCcEEEEcC---------CCcEEEeCCCCCCeeEcc
Confidence 7421 24444446789999752 1111222333 3445667777763 244666666677899875
Q ss_pred CCCCCCCCceEEEE-CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEc
Q 016413 214 PLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG 289 (390)
Q Consensus 214 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~G 289 (390)
.-... ....+... ++++++++ ..+. ....++ |....|.........|.......-++.|+++.
T Consensus 141 ~~~~g-s~~~~~r~~dG~~vavs-~~G~----~~~s~~-------~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 141 SETSG-SINDITRSSDGRYVAVS-SRGN----FYSSWD-------PGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp -S-----EEEEEE-TTS-EEEEE-TTSS----EEEEE--------TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred cCCcc-eeEeEEECCCCcEEEEE-Cccc----EEEEec-------CCCccceEEccCccceehhceecCCCCEEEEe
Confidence 42221 22223333 45555454 3221 112233 56677988765544554444455577887765
No 75
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.39 E-value=2.4 Score=39.35 Aligned_cols=140 Identities=17% Similarity=0.130 Sum_probs=76.2
Q ss_pred CEEEEEece-eCCCCCCCC-ceEEEEECCCC-----CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEe
Q 016413 179 RYIYIVSGQ-YGPQCRGPT-SRTFVLDSETR-----KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 179 ~~iyv~GG~-~~~~~~~~~-~~v~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
...+++|-. .......+. ..+..|+..+. +.+.+......-.-.+++.++++|.+.-| ..+..|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 467777743 222221223 77999998885 56666544444445677788999777665 34566665
Q ss_pred eeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCC-CCCeEECC
Q 016413 252 AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDD-EMKWKVLP 330 (390)
Q Consensus 252 ~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~-~~~W~~~~ 330 (390)
. .+.++.....+..+-...+..+.++.|++---..+- .++.|++ ..+-..++
T Consensus 115 ~------~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv---------------------~~~~~~~~~~~l~~va 167 (321)
T PF03178_consen 115 D------NSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSV---------------------SLLRYDEENNKLILVA 167 (321)
T ss_dssp E------TTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSE---------------------EEEEEETTTE-EEEEE
T ss_pred c------CcccchhhheecceEEEEEEeccccEEEEEEcccCE---------------------EEEEEEccCCEEEEEE
Confidence 2 223477776655554556777888877655433332 1556773 44566666
Q ss_pred CCCCCCCcceeEEEEE-CCEEEEEc
Q 016413 331 PMPKPNSHIECAWVIV-NNSIIITG 354 (390)
Q Consensus 331 ~~~~~~~~~~~~~~~~-~~~l~v~G 354 (390)
.-..++.-. ++..+ ++..++++
T Consensus 168 ~d~~~~~v~--~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 168 RDYQPRWVT--AAEFLVDEDTIIVG 190 (321)
T ss_dssp EESS-BEEE--EEEEE-SSSEEEEE
T ss_pred ecCCCccEE--EEEEecCCcEEEEE
Confidence 544444422 23344 55533333
No 76
>smart00284 OLF Olfactomedin-like domains.
Probab=90.46 E-value=12 Score=33.30 Aligned_cols=185 Identities=16% Similarity=0.149 Sum_probs=98.3
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeC----CCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEE
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNF----TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~----~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 203 (390)
++++|++-+.... .+.++.|.- ....+...-.||. +-.+.+.++.+|.+|.--. ....+-+||
T Consensus 34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~GtG~VVYngslYY~~~--------~s~~iiKyd 100 (255)
T smart00284 34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPH--AGQGTGVVVYNGSLYFNKF--------NSHDICRFD 100 (255)
T ss_pred CceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCC--ccccccEEEECceEEEEec--------CCccEEEEE
Confidence 4689998765421 244666642 2333433334555 3567778889999998432 257799999
Q ss_pred CCCCCeEeCCCCCCC------------CCCceEEEECCEEEEEccCCCCC---CCCCcceEEeeeeccccccCCeEEccC
Q 016413 204 SETRKWDSIPPLPSP------------RYSPATQLWRGRLHVMGGSKENR---HTPGLEHWSIAVKDGKALEKAWRTEIP 268 (390)
Q Consensus 204 ~~~~~W~~~~~~p~~------------r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~~~~~~~~~~~~~W~~~~~ 268 (390)
+.+.+=.....+|.+ -...-.++-++-|+|+=...... ...+++..++. -..+|.. +
T Consensus 101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~------ve~tW~T--~ 172 (255)
T smart00284 101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLT------IENTWIT--T 172 (255)
T ss_pred CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccce------EEEEEEc--C
Confidence 999875433333322 11233566677788885443221 11122222221 2456766 3
Q ss_pred CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEE-
Q 016413 269 IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV- 346 (390)
Q Consensus 269 ~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~- 346 (390)
.++...+ .++++=|.||++-...... ..-.+.|| .+.+ +....+|.+......+++..
T Consensus 173 ~~k~sa~-naFmvCGvLY~~~s~~~~~------------------~~I~yayDt~t~~-~~~~~i~f~n~y~~~s~l~YN 232 (255)
T smart00284 173 YNKRSAS-NAFMICGILYVTRSLGSKG------------------EKVFYAYDTNTGK-EGHLDIPFENMYEYISMLDYN 232 (255)
T ss_pred CCccccc-ccEEEeeEEEEEccCCCCC------------------cEEEEEEECCCCc-cceeeeeeccccccceeceeC
Confidence 3433332 4566667899986422110 11267898 5543 23334554444333333433
Q ss_pred --CCEEEEE
Q 016413 347 --NNSIIIT 353 (390)
Q Consensus 347 --~~~l~v~ 353 (390)
+.+||+.
T Consensus 233 P~d~~LY~w 241 (255)
T smart00284 233 PNDRKLYAW 241 (255)
T ss_pred CCCCeEEEE
Confidence 5778876
No 77
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.44 E-value=15 Score=34.11 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=49.8
Q ss_pred EEEEEecCCCCCCCCCeEEEEeCCC-CceeecCCCCCCCCCcceEEEE--eCCEEEEEeceeCCCCCCCCceEEEEECC-
Q 016413 130 LFYVFAGYGSLDYVHSHVDVYNFTD-NKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSE- 205 (390)
Q Consensus 130 ~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~l~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~- 205 (390)
++|+..+.+ ..+..||..+ .+++.+..++.. .....++. .+..||+.+.. ...+..|+..
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~--------~~~i~~~~~~~ 66 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRP--------EFRVLSYRIAD 66 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEECC--------CCcEEEEEECC
Confidence 578875543 3477788754 467666555432 11222333 34567775431 2446666665
Q ss_pred CCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413 206 TRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 206 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
+.+++.+...+.+..-+.++.. +..||+..- . ...+..|++
T Consensus 67 ~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~ 109 (330)
T PRK11028 67 DGALTFAAESPLPGSPTHISTDHQGRFLFSASY-N----ANCVSVSPL 109 (330)
T ss_pred CCceEEeeeecCCCCceEEEECCCCCEEEEEEc-C----CCeEEEEEE
Confidence 4567655543332222222222 345666642 1 234555654
No 78
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.21 E-value=18 Score=34.76 Aligned_cols=98 Identities=9% Similarity=0.030 Sum_probs=50.5
Q ss_pred ccccccCCCCeEECCC-C-C-CcC--CCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceE
Q 016413 99 FADLPAPDLEWEQMPS-A-P-VPR--LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173 (390)
Q Consensus 99 ~~~~~~~~~~W~~~~~-~-~-~~R--~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~ 173 (390)
+..-+-..++|++... . . ..+ ...++...++..|++|-. + .+..=+-..++|+.++..+.........
T Consensus 112 IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~-G------~il~T~DgG~tW~~~~~~~~~p~~~~~i 184 (398)
T PLN00033 112 LLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP-A------ILLHTSDGGETWERIPLSPKLPGEPVLI 184 (398)
T ss_pred EEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc-e------EEEEEcCCCCCceECccccCCCCCceEE
Confidence 4444445678988532 1 1 111 234445557788887532 1 1333333568999875432211122222
Q ss_pred EEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeC
Q 016413 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI 212 (390)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~ 212 (390)
.+.-++.++++|. ...+++-+-...+|+.+
T Consensus 185 ~~~~~~~~~ivg~---------~G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 185 KATGPKSAEMVTD---------EGAIYVTSNAGRNWKAA 214 (398)
T ss_pred EEECCCceEEEec---------cceEEEECCCCCCceEc
Confidence 2233456777773 23366665566789987
No 79
>PRK00178 tolB translocation protein TolB; Provisional
Probab=90.03 E-value=19 Score=34.83 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=37.3
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (390)
..++++|+.+.+-+.+...+.. -........+.+|++..-.++ ..+++++|..+...+.+..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEccc
Confidence 4699999998887776554321 112222223445554332111 3679999999998887764
No 80
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.96 E-value=19 Score=34.62 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=28.1
Q ss_pred ccCCCCeEECCCCC-CcCCCceEEEEC-CEEEEEecCCCCCCCCCeEEEEeCCCCceeec
Q 016413 103 PAPDLEWEQMPSAP-VPRLDGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR 160 (390)
Q Consensus 103 ~~~~~~W~~~~~~~-~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 160 (390)
.-..++|+.++..+ .+-.......++ +.++++|... .+++=+-...+|+.+
T Consensus 162 ~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G-------~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 162 SDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEG-------AIYVTSNAGRNWKAA 214 (398)
T ss_pred cCCCCCceECccccCCCCCceEEEEECCCceEEEeccc-------eEEEECCCCCCceEc
Confidence 33457999876422 122223333343 4577776322 256655567899876
No 81
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.89 E-value=14 Score=33.00 Aligned_cols=184 Identities=12% Similarity=0.072 Sum_probs=98.3
Q ss_pred hccEEEEecCCCCCCCccccceeeeec----c-CCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccC
Q 016413 31 IADFMWASSSSSFSSSSAHLSVASNWA----L-EKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAP 105 (390)
Q Consensus 31 ~~~~l~~~GG~~~~~~~~~~~~~~~~d----~-~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (390)
-.+++|++.+. .+ . .+..|. . ..++..+.-.++.+ -.+.+-++..+.-.-... -+..+.+||..
T Consensus 29 ~~~~iy~~~~~-~~--~----~v~ey~~~~~f~~~~~~~~~~~Lp~~---~~GtG~vVYngslYY~~~-~s~~IvkydL~ 97 (250)
T PF02191_consen 29 DSEKIYVTSGF-SG--N----TVYEYRNYEDFLRNGRSSRTYKLPYP---WQGTGHVVYNGSLYYNKY-NSRNIVKYDLT 97 (250)
T ss_pred CCCCEEEECcc-CC--C----EEEEEcCHhHHhhcCCCceEEEEece---eccCCeEEECCcEEEEec-CCceEEEEECc
Confidence 46788999887 32 2 344442 2 23333332223333 445566666555222222 23378889988
Q ss_pred CCC---eEECCCCCC---------cCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCC----CceeecCCCCCCCCC
Q 016413 106 DLE---WEQMPSAPV---------PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDRFDMPKDMAH 169 (390)
Q Consensus 106 ~~~---W~~~~~~~~---------~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~~l~~~~~r 169 (390)
+++ +..|+.... +-...-.++-++-|+|+-........ --|-+.||.+ ++|.. ..+. +.
T Consensus 98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~-ivvskld~~tL~v~~tw~T--~~~k--~~ 172 (250)
T PF02191_consen 98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN-IVVSKLDPETLSVEQTWNT--SYPK--RS 172 (250)
T ss_pred CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc-EEEEeeCcccCceEEEEEe--ccCc--hh
Confidence 874 444543211 11123334446679998776554421 2255566653 46764 3443 22
Q ss_pred cceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC-CCCCCCCCceEEEE---CCEEEEEc
Q 016413 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLW---RGRLHVMG 235 (390)
Q Consensus 170 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~iyv~G 235 (390)
... +-++-|.||++-..+... ..-.+.||..+++=+.+. +.+.+-..++++.. +.+||+.-
T Consensus 173 ~~n-aFmvCGvLY~~~s~~~~~----~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 173 AGN-AFMVCGVLYATDSYDTRD----TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred hcc-eeeEeeEEEEEEECCCCC----cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 233 334557899997654332 456789999988755433 33444445555544 57888883
No 82
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.84 E-value=17 Score=33.77 Aligned_cols=93 Identities=10% Similarity=0.076 Sum_probs=41.8
Q ss_pred cccccccC-CCCeEECCCCCCcCCCceEEEE-CC-EEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcce
Q 016413 98 TFADLPAP-DLEWEQMPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHL 172 (390)
Q Consensus 98 ~~~~~~~~-~~~W~~~~~~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~ 172 (390)
.+..|+.. ..+++.+...+.+..-..++.. ++ .||+.. .. .+.+.+||+.++. ...+..++. ....|
T Consensus 58 ~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~ 129 (330)
T PRK11028 58 RVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQIIEG--LEGCH 129 (330)
T ss_pred cEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeeccC--CCccc
Confidence 45445443 3355544433322121223222 34 566653 22 1457777775431 122222222 11223
Q ss_pred EEEEe--CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413 173 GVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (390)
Q Consensus 173 ~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (390)
.+++. +..+|+..- ..+.+.+||..+
T Consensus 130 ~~~~~p~g~~l~v~~~--------~~~~v~v~d~~~ 157 (330)
T PRK11028 130 SANIDPDNRTLWVPCL--------KEDRIRLFTLSD 157 (330)
T ss_pred EeEeCCCCCEEEEeeC--------CCCEEEEEEECC
Confidence 34333 446776542 146788999876
No 83
>PRK04792 tolB translocation protein TolB; Provisional
Probab=89.72 E-value=21 Score=34.89 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=39.0
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (390)
..++++|+.+.+-+.+...+. .....+..-.+..|++....++ ..+++.+|..+.+.+.+..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPG--INGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCCC--CcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECcc
Confidence 469999998887766665543 1122333334455665543221 4679999999988887764
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.56 E-value=15 Score=35.37 Aligned_cols=104 Identities=8% Similarity=0.047 Sum_probs=56.5
Q ss_pred ECCEEEEEecCCCCCCCCCeEEEEeCCCCc-eeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECC
Q 016413 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (390)
Q Consensus 127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 205 (390)
.+++|+++|+..+ .|-+||.++.. -..+..-..|..+ --....++.++++|+-+. .+..+|..
T Consensus 78 ~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv~~--~~f~~~d~t~l~s~sDd~--------v~k~~d~s 141 (487)
T KOG0310|consen 78 SDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPVHV--TKFSPQDNTMLVSGSDDK--------VVKYWDLS 141 (487)
T ss_pred cCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCceeE--EEecccCCeEEEecCCCc--------eEEEEEcC
Confidence 3799999998764 48899955522 1112222222211 122347889999987432 23344554
Q ss_pred CCCeE-eCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEe
Q 016413 206 TRKWD-SIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 206 ~~~W~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
+..=+ .+..-..-....+....++.|++-||++ ..+..||.
T Consensus 142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD-----g~vrl~Dt 183 (487)
T KOG0310|consen 142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD-----GKVRLWDT 183 (487)
T ss_pred CcEEEEEecCCcceeEeeccccCCCeEEEecCCC-----ceEEEEEe
Confidence 44311 1111111122223446688899999986 46788885
No 85
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.23 E-value=4.7 Score=36.06 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=69.9
Q ss_pred cCCCCCCCCCcceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCC
Q 016413 160 RFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSK 238 (390)
Q Consensus 160 ~~~l~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 238 (390)
+...|....-+.-+... .++.+|.--|..+ .+.+.+||+.+.+=....++|..-++=.++.++++||.+-=.+
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~ 109 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE 109 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC
Confidence 34444432233344555 6789999877654 5779999999988766667887777778899999999996432
Q ss_pred CCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCC
Q 016413 239 ENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQE 292 (390)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~ 292 (390)
....+|| + ++.+.+...+.+..+-+.+.-+.+|++--|.+
T Consensus 110 -----~~~f~yd-------~--~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 110 -----GTGFVYD-------P--NTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp -----SEEEEEE-------T--TTTEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred -----CeEEEEc-------c--ccceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence 2344454 2 34555555444455567887788888887743
No 86
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=88.88 E-value=14 Score=31.54 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=17.3
Q ss_pred EECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccc
Q 016413 345 IVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLV 381 (390)
Q Consensus 345 ~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 381 (390)
..++++|+|-|. ..++||..+++
T Consensus 156 ~~~~~~yfF~g~--------------~y~~~d~~~~~ 178 (194)
T cd00094 156 WLDGYYYFFKGD--------------QYWRFDPRSKE 178 (194)
T ss_pred eCCCcEEEEECC--------------EEEEEeCccce
Confidence 334899999775 48899987765
No 87
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.77 E-value=17 Score=32.46 Aligned_cols=186 Identities=16% Similarity=0.189 Sum_probs=101.0
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCC-----CCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEE
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFT-----DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~-----~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 202 (390)
.+++|++.+..+. .++.|... .+.....-.||. +-.+.+.++.+|.+|---. ..+.+.+|
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~--~~~GtG~vVYngslYY~~~--------~s~~Ivky 94 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPY--PWQGTGHVVYNGSLYYNKY--------NSRNIVKY 94 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEec--eeccCCeEEECCcEEEEec--------CCceEEEE
Confidence 4689999887653 35665432 233333334554 3456667778888876431 26889999
Q ss_pred ECCCCC---eEeCCCC------C---CCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCC
Q 016413 203 DSETRK---WDSIPPL------P---SPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIP 270 (390)
Q Consensus 203 d~~~~~---W~~~~~~------p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p 270 (390)
|+.+++ +..++.. | .+-...-.++-++-|+|+-........-.+-+.| ..+++ ...+|..- .+
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld--~~tL~-v~~tw~T~--~~ 169 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLD--PETLS-VEQTWNTS--YP 169 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeC--cccCc-eEEEEEec--cC
Confidence 999886 4445421 1 1112234567778888886654322111111111 11111 24567653 44
Q ss_pred CCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEE---
Q 016413 271 RGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV--- 346 (390)
Q Consensus 271 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~--- 346 (390)
+... ..++++=|.||++-...... ..-.+.|| .+++=+ ...++.+......+++..
T Consensus 170 k~~~-~naFmvCGvLY~~~s~~~~~------------------~~I~yafDt~t~~~~-~~~i~f~~~~~~~~~l~YNP~ 229 (250)
T PF02191_consen 170 KRSA-GNAFMVCGVLYATDSYDTRD------------------TEIFYAFDTYTGKEE-DVSIPFPNPYGNISMLSYNPR 229 (250)
T ss_pred chhh-cceeeEeeEEEEEEECCCCC------------------cEEEEEEECCCCcee-ceeeeeccccCceEeeeECCC
Confidence 4333 24667778899997765321 12267898 555433 344554444333444444
Q ss_pred CCEEEEE
Q 016413 347 NNSIIIT 353 (390)
Q Consensus 347 ~~~l~v~ 353 (390)
+.+||+.
T Consensus 230 dk~LY~w 236 (250)
T PF02191_consen 230 DKKLYAW 236 (250)
T ss_pred CCeEEEE
Confidence 5788887
No 88
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.70 E-value=11 Score=35.36 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=50.1
Q ss_pred EEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC--CCeE
Q 016413 133 VFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET--RKWD 210 (390)
Q Consensus 133 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~--~~W~ 210 (390)
.+|++.....-.=.++.||.++.+++.+........-...+....++.||+..... .....+..|.... .+.+
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~-----~~~g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS-----GDSGGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS-----STTTEEEEEEEETTTTEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc-----cCCCCEEEEEECCCcceeE
Confidence 45665532221123666777999998876533211111222223578899986532 0234555565544 5777
Q ss_pred eCCCCCCCCCCceEEEE---CCEEEEE
Q 016413 211 SIPPLPSPRYSPATQLW---RGRLHVM 234 (390)
Q Consensus 211 ~~~~~p~~r~~~~~~~~---~~~iyv~ 234 (390)
.+...+......+.+.+ +..||+.
T Consensus 78 ~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 78 LLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred EeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 77655533333333333 4556665
No 89
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.37 E-value=20 Score=32.93 Aligned_cols=260 Identities=13% Similarity=0.131 Sum_probs=105.4
Q ss_pred ccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeEE
Q 016413 32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQ 111 (390)
Q Consensus 32 ~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 111 (390)
.+.-|++|-. + .+..-+---.+|..+..-...+....-.++...++.+....+ ...++.-.-...+|++
T Consensus 27 ~~~G~~VG~~--g-------~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~--~g~ll~T~DgG~tW~~ 95 (302)
T PF14870_consen 27 PNHGWAVGAY--G-------TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE--PGLLLHTTDGGKTWER 95 (302)
T ss_dssp SS-EEEEETT--T-------EEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEE--TTEEEEESSTTSS-EE
T ss_pred CCEEEEEecC--C-------EEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcC--CceEEEecCCCCCcEE
Confidence 3556777744 1 233333356789887643222111111223332222222111 1134444445679999
Q ss_pred CCC-CCCcCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEE-EEeCCEEEEEecee
Q 016413 112 MPS-APVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV-VSDGRYIYIVSGQY 188 (390)
Q Consensus 112 ~~~-~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~-~~~~~~iyv~GG~~ 188 (390)
++- .+.|-..+.+..+ ++.++++|.. ..+++=.-...+|+.+..-.. ..-..+ ...++.+++++. .
T Consensus 96 v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~---gs~~~~~r~~dG~~vavs~-~ 164 (302)
T PF14870_consen 96 VPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETS---GSINDITRSSDGRYVAVSS-R 164 (302)
T ss_dssp ----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S-------EEEEEE-TTS-EEEEET-T
T ss_pred eecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCc---ceeEeEEECCCCcEEEEEC-c
Confidence 862 2334344444444 5567777643 236665556789998654222 122222 235677666652 1
Q ss_pred CCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEE-EECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEcc
Q 016413 189 GPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI 267 (390)
Q Consensus 189 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 267 (390)
+ +-+...|+....|+..... ..|.-.++. .-++.|+++. ..+.- .+. +......+|.+..
T Consensus 165 G-------~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~------~~s----~~~~~~~~w~~~~ 225 (302)
T PF14870_consen 165 G-------NFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQI------QFS----DDPDDGETWSEPI 225 (302)
T ss_dssp S-------SEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEE------EEE----E-TTEEEEE---B
T ss_pred c-------cEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEe-CCcEE------EEc----cCCCCcccccccc
Confidence 1 2234568888889887543 334434444 4466787765 22211 111 0001355677632
Q ss_pred -CCCCCCCce-eEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEee-CCCCCeEECCC-CCCCCCcceeE
Q 016413 268 -PIPRGGPHR-ACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYML-DDEMKWKVLPP-MPKPNSHIECA 342 (390)
Q Consensus 268 -~~p~~~~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y-d~~~~W~~~~~-~~~~~~~~~~~ 342 (390)
+.+...... .++. -++++++.||... +++= |..++|++.+. .+.|-.....
T Consensus 226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-----------------------l~~S~DgGktW~~~~~~~~~~~n~~~i- 281 (302)
T PF14870_consen 226 IPIKTNGYGILDLAYRPPNEIWAVGGSGT-----------------------LLVSTDGGKTWQKDRVGENVPSNLYRI- 281 (302)
T ss_dssp -TTSS--S-EEEEEESSSS-EEEEESTT------------------------EEEESSTTSS-EE-GGGTTSSS---EE-
T ss_pred CCcccCceeeEEEEecCCCCEEEEeCCcc-----------------------EEEeCCCCccceECccccCCCCceEEE-
Confidence 333333322 2222 2588999998642 4443 36789999763 2333222222
Q ss_pred EEEECCEEEEEcCC
Q 016413 343 WVIVNNSIIITGGT 356 (390)
Q Consensus 343 ~~~~~~~l~v~GG~ 356 (390)
....+++-+++|..
T Consensus 282 ~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 282 VFVNPDKGFVLGQD 295 (302)
T ss_dssp EEEETTEEEEE-ST
T ss_pred EEcCCCceEEECCC
Confidence 23456799999864
No 90
>smart00284 OLF Olfactomedin-like domains.
Probab=87.82 E-value=20 Score=32.06 Aligned_cols=184 Identities=12% Similarity=0.067 Sum_probs=94.6
Q ss_pred ccEEEEecCCCCCCCccccceeeee----ccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCC
Q 016413 32 ADFMWASSSSSFSSSSAHLSVASNW----ALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDL 107 (390)
Q Consensus 32 ~~~l~~~GG~~~~~~~~~~~~~~~~----d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (390)
++++|+..+.+ ...+.+..| |+...++.+.-.++.+ -...+.+|..+.-.-.+.. +..+.+||..+.
T Consensus 34 ~~~~wv~~~~~-----~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~---~~GtG~VVYngslYY~~~~-s~~iiKydL~t~ 104 (255)
T smart00284 34 KSLYWYMPLNT-----RVLRSVREYSSMSDFQMGKNPTDHPLPHA---GQGTGVVVYNGSLYFNKFN-SHDICRFDLTTE 104 (255)
T ss_pred CceEEEEcccc-----CCCcEEEEecCHHHHhccCCceEEECCCc---cccccEEEECceEEEEecC-CccEEEEECCCC
Confidence 47888887751 122345454 2333444332223333 4556667766553222211 237888998887
Q ss_pred CeEECCCCCCc----CC--------CceEEEECCEEEEEecCCCCCCCCCeEEEEeCCC----CceeecCCCCCCCCCcc
Q 016413 108 EWEQMPSAPVP----RL--------DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDRFDMPKDMAHSH 171 (390)
Q Consensus 108 ~W~~~~~~~~~----R~--------~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~~l~~~~~r~~ 171 (390)
+=.....+|.+ +. ..-+++-.+-|+|+=........ --+-+.||.+ ++|.. ..+. +..
T Consensus 105 ~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~-ivvSkLnp~tL~ve~tW~T--~~~k---~sa 178 (255)
T smart00284 105 TYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK-IVISKLNPATLTIENTWIT--TYNK---RSA 178 (255)
T ss_pred cEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC-EEEEeeCcccceEEEEEEc--CCCc---ccc
Confidence 65433333322 11 12234445678888554333221 1245667654 46765 3343 333
Q ss_pred eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC-CCCCCCCCceEEEE---CCEEEEE
Q 016413 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLW---RGRLHVM 234 (390)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~iyv~ 234 (390)
..+-++-|.||++-.... ....-.+.||..+.+=..+. +++.+...+++.-. +.+||+.
T Consensus 179 ~naFmvCGvLY~~~s~~~----~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 179 SNAFMICGILYVTRSLGS----KGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred cccEEEeeEEEEEccCCC----CCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEE
Confidence 333445578999953211 22466789999987633321 33444444455533 6788887
No 91
>PRK04792 tolB translocation protein TolB; Provisional
Probab=87.64 E-value=30 Score=33.91 Aligned_cols=191 Identities=12% Similarity=0.085 Sum_probs=88.5
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceE
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 224 (390)
..++..|.....-+.+...+.+ -......-.+.+|+.+ -... ....++++|+.+.+-+.+...+......+.
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~--~~~p~wSPDG~~La~~-s~~~-----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~w 269 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEP--LMSPAWSPDGRKLAYV-SFEN-----RKAEIFVQDIYTQVREKVTSFPGINGAPRF 269 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCc--ccCceECCCCCEEEEE-EecC-----CCcEEEEEECCCCCeEEecCCCCCcCCeeE
Confidence 4677777766544444333221 1122222233444433 2211 146799999988877766654422222222
Q ss_pred EEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCE-EEEEcCCCCCCCCCCCCCc
Q 016413 225 QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDR-LFVVGGQEGDFMAKPGSPI 303 (390)
Q Consensus 225 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~ 303 (390)
..-+..|++....++ ...+..++ ..+.+.+.+......... ....-+++ |++.....+.
T Consensus 270 SPDG~~La~~~~~~g---~~~Iy~~d-------l~tg~~~~lt~~~~~~~~-p~wSpDG~~I~f~s~~~g~--------- 329 (448)
T PRK04792 270 SPDGKKLALVLSKDG---QPEIYVVD-------IATKALTRITRHRAIDTE-PSWHPDGKSLIFTSERGGK--------- 329 (448)
T ss_pred CCCCCEEEEEEeCCC---CeEEEEEE-------CCCCCeEECccCCCCccc-eEECCCCCEEEEEECCCCC---------
Confidence 223445655533221 11233333 456666665432211111 12223444 5444322211
Q ss_pred cccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccce
Q 016413 304 FKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVI 382 (390)
Q Consensus 304 ~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 382 (390)
.++|.+| .+.+++.+..- .... ...+ ...+++.+++....... ..++.+|+.+...
T Consensus 330 -----------~~Iy~~dl~~g~~~~Lt~~-g~~~-~~~~-~SpDG~~l~~~~~~~g~---------~~I~~~dl~~g~~ 386 (448)
T PRK04792 330 -----------PQIYRVNLASGKVSRLTFE-GEQN-LGGS-ITPDGRSMIMVNRTNGK---------FNIARQDLETGAM 386 (448)
T ss_pred -----------ceEEEEECCCCCEEEEecC-CCCC-cCee-ECCCCCEEEEEEecCCc---------eEEEEEECCCCCe
Confidence 2599998 67777776421 1111 1121 33355544444333221 2588899888776
Q ss_pred eecc
Q 016413 383 IYHY 386 (390)
Q Consensus 383 ~~v~ 386 (390)
..+.
T Consensus 387 ~~lt 390 (448)
T PRK04792 387 QVLT 390 (448)
T ss_pred EEcc
Confidence 6554
No 92
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=87.60 E-value=18 Score=31.40 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=31.9
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (390)
+++.+++++.+ ..+.+||..+++-.. .+... ...-.++... ++.+++.++. ...+..||+.+
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~--~~~~~-~~~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~ 124 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVR--TLTGH-TSYVSSVAFSPDGRILSSSSR--------DKTIKVWDVET 124 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceE--EEecc-CCcEEEEEEcCCCCEEEEecC--------CCeEEEEECCC
Confidence 34466666654 358888887653221 11111 1112222332 3456666652 34578888874
Q ss_pred C
Q 016413 207 R 207 (390)
Q Consensus 207 ~ 207 (390)
.
T Consensus 125 ~ 125 (289)
T cd00200 125 G 125 (289)
T ss_pred c
Confidence 4
No 93
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.16 E-value=7.8 Score=34.68 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=68.8
Q ss_pred ECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (390)
Q Consensus 127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (390)
.++.+|.--|..+. +.+.+||+.+.+=....++|. .-++-+++..+++||.+- -.....++||+.+
T Consensus 54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~--~~FgEGit~~~d~l~qLT--------Wk~~~~f~yd~~t 119 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPP--RYFGEGITILGDKLYQLT--------WKEGTGFVYDPNT 119 (264)
T ss_dssp ETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TT--T--EEEEEEETTEEEEEE--------SSSSEEEEEETTT
T ss_pred CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCc--cccceeEEEECCEEEEEE--------ecCCeEEEEcccc
Confidence 47899998887663 569999999998776677776 457778899999999984 2356789999875
Q ss_pred CCeEeCCCCCCCCCCceEEEECCEEEEEccCC
Q 016413 207 RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSK 238 (390)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 238 (390)
.+.+...+.+..+-.++..+..|++.-|.+
T Consensus 120 --l~~~~~~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 120 --LKKIGTFPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp --TEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred --ceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence 566665555567778888888899987743
No 94
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=86.92 E-value=33 Score=34.50 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=21.8
Q ss_pred eeeeeccCCCceEeecCCCCCccccccceEEEe
Q 016413 52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVI 84 (390)
Q Consensus 52 ~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~ 84 (390)
.+|.|++.. .|...+.+.. |..|+-.+.+-.
T Consensus 48 ~IEiwN~~~-~w~~~~vi~g-~~drsIE~L~W~ 78 (691)
T KOG2048|consen 48 NIEIWNLSN-NWFLEPVIHG-PEDRSIESLAWA 78 (691)
T ss_pred cEEEEccCC-CceeeEEEec-CCCCceeeEEEc
Confidence 789999755 8888777666 345666666655
No 95
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=86.72 E-value=30 Score=33.12 Aligned_cols=62 Identities=11% Similarity=0.242 Sum_probs=37.2
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (390)
..++++|+.+.+-..+...+. .....+....+..|++....++ ..+++.+|+.+...+.+..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~--~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG--MNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCC
Confidence 469999999887666554432 1222222223445665533221 3578999999888777754
No 96
>PLN00181 protein SPA1-RELATED; Provisional
Probab=86.67 E-value=43 Score=35.51 Aligned_cols=98 Identities=8% Similarity=0.086 Sum_probs=48.3
Q ss_pred CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (390)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (390)
+..++.|+.++ .+..||..+++-. ..+..- ...-.+++.. ++.+++.||.+ ..+..||..+
T Consensus 545 ~~~las~~~Dg------~v~lWd~~~~~~~--~~~~~H-~~~V~~l~~~p~~~~~L~Sgs~D--------g~v~iWd~~~ 607 (793)
T PLN00181 545 KSQVASSNFEG------VVQVWDVARSQLV--TEMKEH-EKRVWSIDYSSADPTLLASGSDD--------GSVKLWSINQ 607 (793)
T ss_pred CCEEEEEeCCC------eEEEEECCCCeEE--EEecCC-CCCEEEEEEcCCCCCEEEEEcCC--------CEEEEEECCC
Confidence 44566666653 4778888765432 222211 1122333332 56788888754 3467788765
Q ss_pred CCeEeCCCCCCCCCCceEEE---ECCEEEEEccCCCCCCCCCcceEEe
Q 016413 207 RKWDSIPPLPSPRYSPATQL---WRGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
..- +..+.. ......+. -++.+++.|+.+ ..+..||+
T Consensus 608 ~~~--~~~~~~-~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~ 647 (793)
T PLN00181 608 GVS--IGTIKT-KANICCVQFPSESGRSLAFGSAD-----HKVYYYDL 647 (793)
T ss_pred CcE--EEEEec-CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEEC
Confidence 432 111111 11111121 246677777654 35667774
No 97
>PRK05137 tolB translocation protein TolB; Provisional
Probab=85.80 E-value=36 Score=33.08 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=39.5
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCC
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 215 (390)
..++++|+.+.+.+.+...+.. ....+..-.+.+|++....++ ..+++.+|..+..-+.+...
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~--~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~ 288 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGM--TFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDS 288 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCc--ccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCC
Confidence 4699999999888877655431 223333333445554433221 46799999998887777643
No 98
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=85.04 E-value=20 Score=33.15 Aligned_cols=199 Identities=14% Similarity=0.190 Sum_probs=88.0
Q ss_pred eEEEEeCCEEEEEeceeCCC--CCCCCceEEEEE-CCCCCeEeCCC---CC--CC---CCCceEEEECCEEEEEccCCCC
Q 016413 172 LGVVSDGRYIYIVSGQYGPQ--CRGPTSRTFVLD-SETRKWDSIPP---LP--SP---RYSPATQLWRGRLHVMGGSKEN 240 (390)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~--~~~~~~~v~~yd-~~~~~W~~~~~---~p--~~---r~~~~~~~~~~~iyv~GG~~~~ 240 (390)
++++..++.|++|..-.... .......+..+. ....+|+.... .. .. ...+.+++.++.||++=|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 46788899999987544221 111223333443 34567976431 11 11 2235667889999999886443
Q ss_pred CCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCcccccccc-cee-cCcEE
Q 016413 241 RHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRH-EVV-YGDVY 318 (390)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~ 318 (390)
.. ....|++.++.-+....+|.....++...... .+-++-||-.+--+. ....-++.+... ..- .-.+.
T Consensus 82 ~~--~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~------~~~figgGGSGV~m~-dGTLVFPv~a~~~~~~~~~SlI 152 (310)
T PF13859_consen 82 SA--GADDWGLLLVKSTDGGIKWGDTKSLPSTSFQS------WKQFIGGGGSGVVME-DGTLVFPVQATKKNGDGTVSLI 152 (310)
T ss_dssp ----SSTTEEEEEEEEESSSSEE---EE-GGGS-EE------EEEEEE-SEE-EE-T-TS-EEEEEEEEETT---EEEEE
T ss_pred cc--cccccceeeeeccCCcceeeecccCCchhccc------cceeecCCCCceEEc-CCCEEEEEeeeccCccceEEEE
Confidence 22 33456665554333444698876655322100 001222221111000 000000100000 001 12355
Q ss_pred eeC--CCCCeEECCCCCCCCCcceeEEEEE-CCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceee-ccCCC
Q 016413 319 MLD--DEMKWKVLPPMPKPNSHIECAWVIV-NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIY-HYRPP 389 (390)
Q Consensus 319 ~yd--~~~~W~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-v~~~P 389 (390)
+|. ....|+.-..++..-+. ...++-. +++|+++.-++.... .||.=.--..+|.+ ++++|
T Consensus 153 iYS~d~g~~W~lskg~s~~gC~-~psv~EWe~gkLlM~~~c~~g~r---------rVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 153 IYSTDDGKTWKLSKGMSPAGCS-DPSVVEWEDGKLLMMTACDDGRR---------RVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp EEESSTTSS-EE-S----TT-E-EEEEEEE-TTEEEEEEE-TTS------------EEEESSTTSS-EE-TTTTT
T ss_pred EEECCCccceEeccccCCCCcc-eEEEEeccCCeeEEEEecccceE---------EEEEEcccceehhhccCccc
Confidence 665 35699987777765554 3556777 889999987765421 35554455678987 56655
No 99
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.62 E-value=47 Score=33.35 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=55.3
Q ss_pred ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCC--ceeecCCCCCCC-C-----CcceEEEEeCCEEEEEeceeCCCCC
Q 016413 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDM-A-----HSHLGVVSDGRYIYIVSGQYGPQCR 193 (390)
Q Consensus 122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~-~-----r~~~~~~~~~~~iyv~GG~~~~~~~ 193 (390)
.+-++.++.||+.... ..+..+|..+. .|+.-...+... + ....++++.+++||+...
T Consensus 63 stPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------- 128 (527)
T ss_pred cCCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------
Confidence 3446679999995432 24888888765 487543332210 0 012234667888887432
Q ss_pred CCCceEEEEECCCCC--eEeCC-CCCCC-CCCceEEEECCEEEEEc
Q 016413 194 GPTSRTFVLDSETRK--WDSIP-PLPSP-RYSPATQLWRGRLHVMG 235 (390)
Q Consensus 194 ~~~~~v~~yd~~~~~--W~~~~-~~p~~-r~~~~~~~~~~~iyv~G 235 (390)
...+.++|.++.+ |+.-. ..... ....+-++.++.||+-.
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~ 172 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGI 172 (527)
T ss_pred --CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEee
Confidence 3468899987754 86543 22111 11223456788877753
No 100
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=84.42 E-value=13 Score=33.40 Aligned_cols=221 Identities=12% Similarity=0.157 Sum_probs=101.8
Q ss_pred CCCCeEECCC---CC--CcCCCceEEEE--CCEEEEEe--cCCCCCCCCCeE-EEEeCC-CCceeecCCCCCC------C
Q 016413 105 PDLEWEQMPS---AP--VPRLDGAAIQI--KNLFYVFA--GYGSLDYVHSHV-DVYNFT-DNKWVDRFDMPKD------M 167 (390)
Q Consensus 105 ~~~~W~~~~~---~~--~~R~~~~~~~~--~~~lyv~G--G~~~~~~~~~~v-~~yd~~-~~~W~~~~~l~~~------~ 167 (390)
...+|+.... .+ ..+....+.+. +++|+++. +..........+ +..... ..+|+....++.. .
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 3467977432 22 12223333332 78998886 222211111111 244433 5689886544321 0
Q ss_pred CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEEC-CCCCeEeCCCCCCC-CCCc-eEEE-ECCEEEEEccCCCCCCC
Q 016413 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS-ETRKWDSIPPLPSP-RYSP-ATQL-WRGRLHVMGGSKENRHT 243 (390)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~-~~~~W~~~~~~p~~-r~~~-~~~~-~~~~iyv~GG~~~~~~~ 243 (390)
.-....+...++.+++. .+.... ........|.. ...+|+...+.+.. .... +.+. -+++|+++--.. ..
T Consensus 108 ~~~~~~i~~~~G~l~~~-~~~~~~--~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~-- 181 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAP-YYHESG--GSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN-- 181 (275)
T ss_dssp CSEEEEEEECTTEEEEE-EEEESS--CEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS--
T ss_pred cceeeeeEecCCCEEEE-Eeeccc--cCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC--
Confidence 11122245568888887 222211 11333444444 45679888765322 2222 2332 366888886442 11
Q ss_pred CCcceEEeeeeccccccCCeEEcc--CCCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEee
Q 016413 244 PGLEHWSIAVKDGKALEKAWRTEI--PIPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYML 320 (390)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 320 (390)
. ..+-.. +- ....+|+... .+|........+.+ +++++++....... ..+.-....
T Consensus 182 ~--~~~~~~--S~-D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r----------------~~l~l~~S~ 240 (275)
T PF13088_consen 182 D--DIYISR--ST-DGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGR----------------SNLSLYVSE 240 (275)
T ss_dssp T--EEEEEE--ES-STTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTS----------------EEEEEEEEC
T ss_pred C--cEEEEE--EC-CCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCC----------------CceEEEEEe
Confidence 1 222211 11 2567899865 45555443333432 56888776632111 111112233
Q ss_pred CCCCCeEECCCCCCCC---CcceeEEEEECCEEEE
Q 016413 321 DDEMKWKVLPPMPKPN---SHIECAWVIVNNSIII 352 (390)
Q Consensus 321 d~~~~W~~~~~~~~~~---~~~~~~~~~~~~~l~v 352 (390)
|...+|+....+.... ......+..-+|+|+|
T Consensus 241 D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 241 DGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp TTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 3566998765443322 3343433444678886
No 101
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=84.01 E-value=14 Score=28.93 Aligned_cols=83 Identities=13% Similarity=0.267 Sum_probs=56.4
Q ss_pred EEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC---CCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEe
Q 016413 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
+.++|.+|-..-. .. .....+.+||..+.+|+.+.. .........++.++|+|-++.-..... ....+.|-+
T Consensus 2 icinGvly~~a~~-~~---~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWS-ED---SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEE-CC---CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEe
Confidence 3467888887755 11 236789999999999988863 234556677889999999986443221 334677765
Q ss_pred eeeccccccCCeEEc
Q 016413 252 AVKDGKALEKAWRTE 266 (390)
Q Consensus 252 ~~~~~~~~~~~W~~~ 266 (390)
+ |+ ...+|++.
T Consensus 77 e--D~--~k~~Wsk~ 87 (129)
T PF08268_consen 77 E--DY--EKQEWSKK 87 (129)
T ss_pred e--cc--ccceEEEE
Confidence 4 33 35889875
No 102
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=83.82 E-value=31 Score=30.69 Aligned_cols=183 Identities=14% Similarity=0.127 Sum_probs=81.4
Q ss_pred cCCCCeEE--CCCCCC-------cCCCceEEEECCEEEEEecCCCCCCCCC-eEEEEeCCCCcee--------ecCCCCC
Q 016413 104 APDLEWEQ--MPSAPV-------PRLDGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFTDNKWV--------DRFDMPK 165 (390)
Q Consensus 104 ~~~~~W~~--~~~~~~-------~R~~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~~~~W~--------~~~~l~~ 165 (390)
...+.|+. |+..+. .-.-|+.+.+++.-|.+|=..++-.+.. -+..+ ++.|. .++.- .
T Consensus 112 F~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yf---s~~~~sp~~~vrr~i~se-y 187 (367)
T PF12217_consen 112 FHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYF---SDAFASPGVFVRRIIPSE-Y 187 (367)
T ss_dssp STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEE---TTTTT-TT--EEEE--GG-G
T ss_pred cccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEe---cccccCCcceeeeechhh-h
Confidence 34456754 444443 2335888899988888875443332211 12222 22221 22211 1
Q ss_pred CCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC-CCCCCCCCceEEEECCEEEEEccCCCC----
Q 016413 166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWRGRLHVMGGSKEN---- 240 (390)
Q Consensus 166 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~---- 240 (390)
...-+-.++-..++.||+.---.... ++-+.+.+-+.....|+.+. |-.......-.+.+++.||+||-....
T Consensus 188 ~~~AsEPCvkyY~g~LyLtTRgt~~~--~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE 265 (367)
T PF12217_consen 188 ERNASEPCVKYYDGVLYLTTRGTLPT--NPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWE 265 (367)
T ss_dssp -TTEEEEEEEEETTEEEEEEEES-TT--S---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SS
T ss_pred ccccccchhhhhCCEEEEEEcCcCCC--CCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccccccccc
Confidence 11234556667899999986322221 34577888888888998874 222223333467889999999964321
Q ss_pred ------CCC---CCcceEEeeeeccccccCCeEEccC------CCCCCCce-eEEEECCEEE-EEcCCC
Q 016413 241 ------RHT---PGLEHWSIAVKDGKALEKAWRTEIP------IPRGGPHR-ACFVFNDRLF-VVGGQE 292 (390)
Q Consensus 241 ------~~~---~~~~~~~~~~~~~~~~~~~W~~~~~------~p~~~~~~-~~~~~~~~iy-v~GG~~ 292 (390)
++. +......+.+.+.+++.-+|..+.. ......+. ++|+.++-|| +|||.+
T Consensus 266 ~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 266 GGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp TT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred cCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 111 1111112223344466777776632 12222222 4456677765 789975
No 103
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.64 E-value=35 Score=31.10 Aligned_cols=161 Identities=15% Similarity=0.069 Sum_probs=84.1
Q ss_pred eecCCCCCCCCCcceEEEEeCCEEEEEeceeC-------CC-------CCCCCceEEEEECCCCC----eEeCCCCCCCC
Q 016413 158 VDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG-------PQ-------CRGPTSRTFVLDSETRK----WDSIPPLPSPR 219 (390)
Q Consensus 158 ~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~-------~~-------~~~~~~~v~~yd~~~~~----W~~~~~~p~~r 219 (390)
+.+.+.|..-.-..-++..+++.|| |||+-. .. ..+..+.|..||.++++ |.+--.-+ +
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~--~ 102 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK--T 102 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc--c
Confidence 3466666533344556666777666 677621 10 01235789999998886 65533222 2
Q ss_pred CCceEE------EECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCC
Q 016413 220 YSPATQ------LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG 293 (390)
Q Consensus 220 ~~~~~~------~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~ 293 (390)
....=+ .++++|++.=+-. . ...-+|.+ +..+.+=+.+...|... ++.+++...|-+ .+.
T Consensus 103 ~WaGEVSdIlYdP~~D~LLlAR~DG-h---~nLGvy~l-----dr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~ 168 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRLLLARADG-H---ANLGVYSL-----DRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNF 168 (339)
T ss_pred ccccchhheeeCCCcCEEEEEecCC-c---ceeeeEEE-----cccCCceeeccCCCCcC---ceEeeeeEEEec--ccc
Confidence 222211 3477888874321 1 12233443 35666666666555543 455566555533 221
Q ss_pred CCCCCCCCCccccccccceecCcEEeeC-CCCCe--EECCC------CCCCCCcceeEEEEECCEEEEE
Q 016413 294 DFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW--KVLPP------MPKPNSHIECAWVIVNNSIIIT 353 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W--~~~~~------~~~~~~~~~~~~~~~~~~l~v~ 353 (390)
. .-.+.+.+|| .+.+| +..+. -+.-+ +..-+++...+++|.|
T Consensus 169 ~-----------------~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~-~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 169 H-----------------KGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIR-PELGAMASAYNRLFAF 219 (339)
T ss_pred c-----------------cCCceEEEEEccCCeEEEEecccccCCCCCceEe-eccccEEEEeeeEEEE
Confidence 1 1235699999 88899 44331 01111 1223356677787765
No 104
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=83.62 E-value=38 Score=31.57 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=72.4
Q ss_pred ceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCc--eEEEECCEEEEEccCCCCCCCCCcc
Q 016413 171 HLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSP--ATQLWRGRLHVMGGSKENRHTPGLE 247 (390)
Q Consensus 171 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~ 247 (390)
-++++.. +..+.+.||-+ +..+.++..+..|-- .++--...- ....+++.+.+-|+.++ .+.
T Consensus 67 vFavsl~P~~~l~aTGGgD--------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG-----~v~ 131 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGD--------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG-----KVL 131 (399)
T ss_pred eEEEEeCCCCceEEecCCC--------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc-----cEE
Confidence 3444444 67788888854 345677777776422 233222222 23366888888888754 344
Q ss_pred eEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCe
Q 016413 248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW 326 (390)
Q Consensus 248 ~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W 326 (390)
+|... ....+|....++..-- --..--...|++.|-.++. +|.|. +...-
T Consensus 132 v~~~s-----tg~~~~~~~~e~~die--Wl~WHp~a~illAG~~DGs----------------------vWmw~ip~~~~ 182 (399)
T KOG0296|consen 132 VFKVS-----TGGEQWKLDQEVEDIE--WLKWHPRAHILLAGSTDGS----------------------VWMWQIPSQAL 182 (399)
T ss_pred EEEcc-----cCceEEEeecccCceE--EEEecccccEEEeecCCCc----------------------EEEEECCCcce
Confidence 55432 3444555431111000 0000002367777776654 88887 65422
Q ss_pred EECCCCCCCCCcceeEEEEECCEEEEEcCCC
Q 016413 327 KVLPPMPKPNSHIECAWVIVNNSIIITGGTT 357 (390)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~ 357 (390)
.+ -|+-+.....++-...+||.++.|-.+
T Consensus 183 ~k--v~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 183 CK--VMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred ee--EecCCCCCcccccccCCCceEEEEecC
Confidence 22 233333333444456677777666543
No 105
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.17 E-value=41 Score=31.55 Aligned_cols=144 Identities=15% Similarity=0.219 Sum_probs=66.3
Q ss_pred cccccccCC--CCeEECCCCCCcCCCceEEEE---CCEEEEEecCCCCCCCCCeEEEEeCCCCc-eeec---------CC
Q 016413 98 TFADLPAPD--LEWEQMPSAPVPRLDGAAIQI---KNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDR---------FD 162 (390)
Q Consensus 98 ~~~~~~~~~--~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~---------~~ 162 (390)
.+..|.... .+.+.+...+......+-+.+ +..||+.- +. ...+.+|++..+- =... .+
T Consensus 63 ~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~ 136 (345)
T PF10282_consen 63 GVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGP 136 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred CEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCC
Confidence 344443333 466666555533333333444 34566652 22 2357777776641 1111 11
Q ss_pred CCC-CCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEEEEECCCCC--eEeCCC--CCCCCCCce-EEEE--CCEEE
Q 016413 163 MPK-DMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPP--LPSPRYSPA-TQLW--RGRLH 232 (390)
Q Consensus 163 l~~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~--~p~~r~~~~-~~~~--~~~iy 232 (390)
-+. ...-..|.+... ++.+|+.- .-.+.++.|+..... .+.... +|.+ .+.. ++.. +..+|
T Consensus 137 ~~~rq~~~h~H~v~~~pdg~~v~v~d--------lG~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 137 NPDRQEGPHPHQVVFSPDGRFVYVPD--------LGADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRHLAFSPDGKYAY 207 (345)
T ss_dssp STTTTSSTCEEEEEE-TTSSEEEEEE--------TTTTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEEEEE-TTSSEEE
T ss_pred cccccccccceeEEECCCCCEEEEEe--------cCCCEEEEEEEeCCCceEEEeeccccccC-CCCcEEEEcCCcCEEE
Confidence 111 111234455544 45787763 115778888887765 554332 2221 2221 2222 35799
Q ss_pred EEccCCCCCCCCCcceEEeeeeccccccCCeEEc
Q 016413 233 VMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE 266 (390)
Q Consensus 233 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 266 (390)
|+.-. .+.+.+|++ ++.+.+++.+
T Consensus 208 v~~e~-----s~~v~v~~~-----~~~~g~~~~~ 231 (345)
T PF10282_consen 208 VVNEL-----SNTVSVFDY-----DPSDGSLTEI 231 (345)
T ss_dssp EEETT-----TTEEEEEEE-----ETTTTEEEEE
T ss_pred EecCC-----CCcEEEEee-----cccCCceeEE
Confidence 98643 344555554 2345555543
No 106
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=81.76 E-value=50 Score=31.61 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=69.7
Q ss_pred ceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCce
Q 016413 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276 (390)
Q Consensus 197 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 276 (390)
..++++|+.+..-+.+...+......+...-+..|++.....+ ...+..++ ..+.+.+.+...+.....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~---~~~i~~~d-------~~~~~~~~l~~~~~~~~~- 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG---NPDIYVMD-------LDGKQLTRLTNGPGIDTE- 282 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC---CccEEEEE-------CCCCCEEECCCCCCCCCC-
Confidence 6789999988776666544322222222122335655533221 12333344 345555555332211111
Q ss_pred eEEEECCE-EEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEc
Q 016413 277 ACFVFNDR-LFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITG 354 (390)
Q Consensus 277 ~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~G 354 (390)
....-+++ |++.....+. ..+|.+| .+..++.+..... ..... ....+++.+++.
T Consensus 283 ~~~s~dg~~l~~~s~~~g~--------------------~~iy~~d~~~~~~~~l~~~~~--~~~~~-~~spdg~~i~~~ 339 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGS--------------------PQIYMMDADGGEVRRLTFRGG--YNASP-SWSPDGDLIAFV 339 (417)
T ss_pred EEECCCCCEEEEEECCCCC--------------------ceEEEEECCCCCEEEeecCCC--CccCe-EECCCCCEEEEE
Confidence 11222444 4444322211 2488898 6666666542211 11111 123356666665
Q ss_pred CCCCCCCcceeeEEeeeEEEeecCccceeecc
Q 016413 355 GTTEKHPMTKRMILVGEVFQFHLDSLVIIYHY 386 (390)
Q Consensus 355 G~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 386 (390)
...... ..++.+|+.+..+..+.
T Consensus 340 ~~~~~~---------~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 340 HREGGG---------FNIAVMDLDGGGERVLT 362 (417)
T ss_pred EccCCc---------eEEEEEeCCCCCeEEcc
Confidence 543321 25889998887666554
No 107
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=81.75 E-value=21 Score=27.96 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=54.1
Q ss_pred EECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCC-CCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEE-E
Q 016413 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL-D 203 (390)
Q Consensus 126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y-d 203 (390)
.++|-||-..-.. ......+-+||..+++|+.+... ..........++.++|+|-++.-..... ...-++|+. |
T Consensus 3 cinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD 78 (129)
T PF08268_consen 3 CINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED 78 (129)
T ss_pred EECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence 4677777776652 11235699999999999876431 1122356777888999999876433221 113567777 4
Q ss_pred CCCCCeEeCC
Q 016413 204 SETRKWDSIP 213 (390)
Q Consensus 204 ~~~~~W~~~~ 213 (390)
.++.+|++..
T Consensus 79 ~~k~~Wsk~~ 88 (129)
T PF08268_consen 79 YEKQEWSKKH 88 (129)
T ss_pred cccceEEEEE
Confidence 6677898764
No 108
>PLN00181 protein SPA1-RELATED; Provisional
Probab=81.56 E-value=66 Score=34.12 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=29.6
Q ss_pred CEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCC-CCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413 179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP-RYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
+...+.|+.+ ..+.+||..+.+- +..+... ..-.+++.. ++.+++.||.+ ..+..|++
T Consensus 545 ~~~las~~~D--------g~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~ 605 (793)
T PLN00181 545 KSQVASSNFE--------GVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSI 605 (793)
T ss_pred CCEEEEEeCC--------CeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEEC
Confidence 4455566543 3477788876432 2222111 111223332 45677777754 35777875
No 109
>PTZ00421 coronin; Provisional
Probab=80.64 E-value=64 Score=32.09 Aligned_cols=102 Identities=10% Similarity=-0.044 Sum_probs=49.0
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCCCcee-----ecCCCCCCCCCcceEEEEe--CCEEEEEeceeCCCCCCCCceEE
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV-----DRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTF 200 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~~l~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~ 200 (390)
++.+++.|+.++ .+.+||..++... .+..+... ...-..+... ++.+++.||.+ ..+.
T Consensus 87 d~~~LaSgS~Dg------tIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~D--------gtVr 151 (493)
T PTZ00421 87 DPQKLFTASEDG------TIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGAD--------MVVN 151 (493)
T ss_pred CCCEEEEEeCCC------EEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCC--------CEEE
Confidence 456778887764 4777777654321 11112110 0111122222 34577777653 3477
Q ss_pred EEECCCCCeEeCCCCCCCCC-CceEE-EECCEEEEEccCCCCCCCCCcceEEe
Q 016413 201 VLDSETRKWDSIPPLPSPRY-SPATQ-LWRGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 201 ~yd~~~~~W~~~~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
+||..+.+-. ..+..... -.++. .-++.+++.|+.+ ..+..||+
T Consensus 152 IWDl~tg~~~--~~l~~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~ 197 (493)
T PTZ00421 152 VWDVERGKAV--EVIKCHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDP 197 (493)
T ss_pred EEECCCCeEE--EEEcCCCCceEEEEEECCCCEEEEecCC-----CEEEEEEC
Confidence 8888765421 11111111 11222 2256777777653 35677774
No 110
>PRK10115 protease 2; Provisional
Probab=80.24 E-value=79 Score=32.93 Aligned_cols=196 Identities=11% Similarity=0.069 Sum_probs=92.5
Q ss_pred CeEEEEeCCCCcee--ecCCCCCCCCCcceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEEC--CCCCeEeCCCCCCCC
Q 016413 145 SHVDVYNFTDNKWV--DRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDS--ETRKWDSIPPLPSPR 219 (390)
Q Consensus 145 ~~v~~yd~~~~~W~--~~~~l~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~r 219 (390)
.+++++++.++.-+ .+-.-+. .......... +++..++..... ..+.++.|+. .+..|..+.+.+..
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~--~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~- 270 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKD--DTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAEPFVFLPRRKD- 270 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCC--CCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCCceEEEECCCC-
Confidence 67999999988432 2221111 1222233333 444333443322 2466888883 23344333222222
Q ss_pred CCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCC
Q 016413 220 YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKP 299 (390)
Q Consensus 220 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 299 (390)
........++.+|+.--.... .+.+...+.+ ...+|+.+.+......--.+...++.|++..-.++.
T Consensus 271 ~~~~~~~~~~~ly~~tn~~~~-------~~~l~~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~----- 337 (686)
T PRK10115 271 HEYSLDHYQHRFYLRSNRHGK-------NFGLYRTRVR-DEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL----- 337 (686)
T ss_pred CEEEEEeCCCEEEEEEcCCCC-------CceEEEecCC-CcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCE-----
Confidence 112333556788888533211 1222212211 146898876552222222455668888777554432
Q ss_pred CCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEE-EEC-CEEEE-EcCCCCCCCcceeeEEeeeEEEe
Q 016413 300 GSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWV-IVN-NSIII-TGGTTEKHPMTKRMILVGEVFQF 375 (390)
Q Consensus 300 ~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~-~~~-~~l~v-~GG~~~~~~~~~~~~~~~~v~~y 375 (390)
..++++| .+.....++ ++.+......... ..+ +.+++ +.+.... .+++.|
T Consensus 338 ---------------~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P----------~~~y~~ 391 (686)
T PRK10115 338 ---------------TSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMTTP----------DTLFEL 391 (686)
T ss_pred ---------------EEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecCCCC----------CEEEEE
Confidence 3488887 444555443 1222221100000 012 23332 3333322 379999
Q ss_pred ecCccceeeccC
Q 016413 376 HLDSLVIIYHYR 387 (390)
Q Consensus 376 d~~~~~W~~v~~ 387 (390)
|+.+++|..+..
T Consensus 392 d~~~~~~~~l~~ 403 (686)
T PRK10115 392 DMDTGERRVLKQ 403 (686)
T ss_pred ECCCCcEEEEEe
Confidence 999988877653
No 111
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=79.71 E-value=73 Score=32.23 Aligned_cols=175 Identities=14% Similarity=0.032 Sum_probs=78.7
Q ss_pred EecCCCCCCCccccceeeeeccCCCceEeecCCCCCcccc----ccceEEEecCCCchhHHHhhhcccccccCCCCeEEC
Q 016413 37 ASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDR----QRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQM 112 (390)
Q Consensus 37 ~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 112 (390)
++||..+| .+.++|..+++-..+-.|..--..+ ...++..+...-..+++.. ..|...|....+-.+-
T Consensus 169 i~~Gs~Dg-------~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~-G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 169 IAGGSIDG-------VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA-GTVTFWDSIFGTLIQS 240 (691)
T ss_pred EEecccCc-------eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC-ceEEEEcccCcchhhh
Confidence 45555454 4667776666665544444331111 1224445544433333221 2454545443321111
Q ss_pred CCCCCcCCCceEEEE-CCEEEEEecCCCCCCCCCeEEEEeCCCC--ceeecCCCCCCCCCcceEEEEeCCEEEEEeceeC
Q 016413 113 PSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG 189 (390)
Q Consensus 113 ~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~ 189 (390)
.....+- -.++++- ++.-++.+|.++ .+..|-..++ +|.....-..+ ++.--++++.+. +.+-||.+.
T Consensus 241 ~~~h~ad-Vl~Lav~~~~d~vfsaGvd~------~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~~-~l~sgG~d~ 311 (691)
T KOG2048|consen 241 HSCHDAD-VLALAVADNEDRVFSAGVDP------KIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIEN-ALISGGRDF 311 (691)
T ss_pred hhhhhcc-eeEEEEcCCCCeEEEccCCC------ceEEEEecCCccceeeeccccCC-cccceeeeeecc-eEEecceee
Confidence 1111111 1233333 335555567664 3666665544 58765432222 244445666766 777788654
Q ss_pred CCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEc
Q 016413 190 PQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMG 235 (390)
Q Consensus 190 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 235 (390)
.-. .....++...... .+-+.++..-.++.-.++++++-
T Consensus 312 ~l~---i~~s~~~~~~~h~----~~~~~p~~~~v~~a~~~~L~~~w 350 (691)
T KOG2048|consen 312 TLA---ICSSREFKNMDHR----QKNLFPASDRVSVAPENRLLVLW 350 (691)
T ss_pred EEE---EccccccCchhhh----ccccccccceeecCccceEEEEe
Confidence 321 1111111111111 12334455555556678888884
No 112
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=79.35 E-value=59 Score=30.90 Aligned_cols=103 Identities=8% Similarity=0.010 Sum_probs=57.9
Q ss_pred CCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC-----CCCC--CCCceEEE
Q 016413 154 DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP-----LPSP--RYSPATQL 226 (390)
Q Consensus 154 ~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-----~p~~--r~~~~~~~ 226 (390)
.+.|+.+..+. ...-.++..+|++|++.- ...++.++.+-. =+++.+ +..+ +...-.+.
T Consensus 189 ~~~Wt~l~~~~----~~~~DIi~~kGkfYAvD~---------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVE 254 (373)
T PLN03215 189 GNVLKALKQMG----YHFSDIIVHKGQTYALDS---------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVE 254 (373)
T ss_pred CCeeeEccCCC----ceeeEEEEECCEEEEEcC---------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEE
Confidence 48999986422 335678889999999931 244566663311 122221 1111 12234667
Q ss_pred ECCEEEEEccCCCCCCC-------CCcceEEeeeeccccccCCeEEccCCC
Q 016413 227 WRGRLHVMGGSKENRHT-------PGLEHWSIAVKDGKALEKAWRTEIPIP 270 (390)
Q Consensus 227 ~~~~iyv~GG~~~~~~~-------~~~~~~~~~~~~~~~~~~~W~~~~~~p 270 (390)
..|+|+++......... .......+.+|..|.+..+|.++..+.
T Consensus 255 s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 255 CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 78899999875321100 011223445565567788999887663
No 113
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=79.17 E-value=42 Score=31.16 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=40.5
Q ss_pred CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCC-CeEECCCCCCCCCcceeEEEE
Q 016413 268 PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM-KWKVLPPMPKPNSHIECAWVI 345 (390)
Q Consensus 268 ~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~-~W~~~~~~~~~~~~~~~~~~~ 345 (390)
.+..-+.+-++..+++++.|-|..+. .|-.+| +.. .-..+..- .... -++.
T Consensus 355 tl~gHkRGIAClQYr~rlvVSGSSDn----------------------tIRlwdi~~G~cLRvLeGH-EeLv----RciR 407 (499)
T KOG0281|consen 355 TLNGHKRGIACLQYRDRLVVSGSSDN----------------------TIRLWDIECGACLRVLEGH-EELV----RCIR 407 (499)
T ss_pred hhhcccccceehhccCeEEEecCCCc----------------------eEEEEeccccHHHHHHhch-HHhh----hhee
Confidence 34333344578899999999887653 266776 443 22222211 1111 1378
Q ss_pred ECCEEEEEcCCCCCC
Q 016413 346 VNNSIIITGGTTEKH 360 (390)
Q Consensus 346 ~~~~l~v~GG~~~~~ 360 (390)
++++-+|-||+++.-
T Consensus 408 Fd~krIVSGaYDGki 422 (499)
T KOG0281|consen 408 FDNKRIVSGAYDGKI 422 (499)
T ss_pred ecCceeeeccccceE
Confidence 899999999998763
No 114
>PRK04922 tolB translocation protein TolB; Provisional
Probab=79.12 E-value=65 Score=31.29 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.0
Q ss_pred CceEEEEECCCCCeEeCCCCC
Q 016413 196 TSRTFVLDSETRKWDSIPPLP 216 (390)
Q Consensus 196 ~~~v~~yd~~~~~W~~~~~~p 216 (390)
...++++|..+.+-+.+...+
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~ 247 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFR 247 (433)
T ss_pred CcEEEEEECCCCCEEEeccCC
Confidence 467899999888877776554
No 115
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=78.89 E-value=30 Score=32.05 Aligned_cols=122 Identities=12% Similarity=0.096 Sum_probs=69.8
Q ss_pred CeEEEEeCCCC-----ceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCC-eEeCCCCCCC
Q 016413 145 SHVDVYNFTDN-----KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK-WDSIPPLPSP 218 (390)
Q Consensus 145 ~~v~~yd~~~~-----~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~ 218 (390)
-.+..|+.... +.+.+.....+ -.-.+++..+++|.+.-| +.+..|+...+. +...+.+..+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~--g~V~ai~~~~~~lv~~~g----------~~l~v~~l~~~~~l~~~~~~~~~ 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK--GPVTAICSFNGRLVVAVG----------NKLYVYDLDNSKTLLKKAFYDSP 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES--S-EEEEEEETTEEEEEET----------TEEEEEEEETTSSEEEEEEE-BS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec--CcceEhhhhCCEEEEeec----------CEEEEEEccCcccchhhheecce
Confidence 45888888774 56665444432 335567778898666544 557788888877 8888866655
Q ss_pred CCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEE-CCEEEEEc
Q 016413 219 RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVF-NDRLFVVG 289 (390)
Q Consensus 219 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~-~~~iyv~G 289 (390)
-...++.+.++.|+|---.. .+..+ .|+....+-..++.-+.++.-.++..+ ++..++++
T Consensus 130 ~~i~sl~~~~~~I~vgD~~~------sv~~~-----~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 130 FYITSLSVFKNYILVGDAMK------SVSLL-----RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp SSEEEEEEETTEEEEEESSS------SEEEE-----EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred EEEEEEeccccEEEEEEccc------CEEEE-----EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 56667778888776653322 22222 222344455566544444444455555 55544443
No 116
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.76 E-value=42 Score=33.65 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=61.2
Q ss_pred eEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCC--------CCceeEEEECCEEEEEcCCCCC
Q 016413 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG--------GPHRACFVFNDRLFVVGGQEGD 294 (390)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~--------~~~~~~~~~~~~iyv~GG~~~~ 294 (390)
+-++.++.||+.... ..+.++|. ......|+.-...+.. ....+.++.+++||+.. .++
T Consensus 64 tPvv~~g~vyv~s~~------g~v~AlDa-----~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~dg- 130 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------SRVYALDA-----KTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-LDA- 130 (527)
T ss_pred CCEEECCEEEEECCC------CcEEEEEC-----CCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-CCC-
Confidence 345779999997542 13344442 1344568764332211 11124566788887643 222
Q ss_pred CCCCCCCCccccccccceecCcEEeeC-CCC--CeEECC-CCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEee
Q 016413 295 FMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLP-PMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVG 370 (390)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~-~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 370 (390)
.++.+| .+. .|+.-. .+.. ......+-++.+++||+.....+.. ...
T Consensus 131 ---------------------~l~ALDa~TGk~~W~~~~~~~~~-~~~~tssP~v~~g~Vivg~~~~~~~-------~~G 181 (527)
T TIGR03075 131 ---------------------RLVALDAKTGKVVWSKKNGDYKA-GYTITAAPLVVKGKVITGISGGEFG-------VRG 181 (527)
T ss_pred ---------------------EEEEEECCCCCEEeecccccccc-cccccCCcEEECCEEEEeecccccC-------CCc
Confidence 389999 543 887532 2221 1112233456788877753221111 112
Q ss_pred eEEEeecCcc--cee
Q 016413 371 EVFQFHLDSL--VII 383 (390)
Q Consensus 371 ~v~~yd~~~~--~W~ 383 (390)
.+..||.++. .|.
T Consensus 182 ~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 182 YVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEEECCCCceeEe
Confidence 5888888774 565
No 117
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=78.69 E-value=40 Score=32.00 Aligned_cols=105 Identities=8% Similarity=0.053 Sum_probs=58.0
Q ss_pred cCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCCCCCeEECCC-----CCC
Q 016413 260 EKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPP-----MPK 334 (390)
Q Consensus 260 ~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~-----~~~ 334 (390)
.+.|+.+..+. .++ --++.++|++|++.-. .+++..|..-+=.+++. +..
T Consensus 189 ~~~Wt~l~~~~-~~~-~DIi~~kGkfYAvD~~-----------------------G~l~~i~~~l~i~~v~~~i~~~~~~ 243 (373)
T PLN03215 189 GNVLKALKQMG-YHF-SDIIVHKGQTYALDSI-----------------------GIVYWINSDLEFSRFGTSLDENITD 243 (373)
T ss_pred CCeeeEccCCC-cee-eEEEEECCEEEEEcCC-----------------------CeEEEEecCCceeeecceecccccC
Confidence 48999986422 222 3789999999998321 12666652111122221 111
Q ss_pred CCCcceeEEEEECCEEEEEcCCCCCCCcc-------eeeEEeeeEEEeecCccceeeccCCC
Q 016413 335 PNSHIECAWVIVNNSIIITGGTTEKHPMT-------KRMILVGEVFQFHLDSLVIIYHYRPP 389 (390)
Q Consensus 335 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~-------~~~~~~~~v~~yd~~~~~W~~v~~~P 389 (390)
.......-.|...|+|+++..+....... ...+..-.|++.|.+..+|.+|..+.
T Consensus 244 g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 244 GCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 11111123577789999988753211000 00112346788899999999998764
No 118
>PRK03629 tolB translocation protein TolB; Provisional
Probab=78.05 E-value=70 Score=31.07 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=37.1
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCC
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 215 (390)
..++.+|+.+.+-+.+...+.. -......-.+.+|++....++ ..+++.+|..+...+.+..-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~--~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~ 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDG 285 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCC--cCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCC
Confidence 4588888888776666554431 122222233445665533211 34699999998888777543
No 119
>PRK05137 tolB translocation protein TolB; Provisional
Probab=77.54 E-value=72 Score=30.97 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=34.5
Q ss_pred CCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCC
Q 016413 144 HSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS 217 (390)
Q Consensus 144 ~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 217 (390)
...+++.|.....=+.+..-..+ -........+.+|+.+ .... ....++++|+.+.+.+.+...+.
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~--v~~p~wSpDG~~lay~-s~~~-----g~~~i~~~dl~~g~~~~l~~~~g 246 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL--VLTPRFSPNRQEITYM-SYAN-----GRPRVYLLDLETGQRELVGNFPG 246 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC--eEeeEECCCCCEEEEE-EecC-----CCCEEEEEECCCCcEEEeecCCC
Confidence 45789988765443333322111 1122222233344333 2211 13679999999988887765543
No 120
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=76.91 E-value=45 Score=28.31 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=47.1
Q ss_pred eEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCce--eecC----CCCCCCCCcceEEEEeC-CEEEEEeceeCCCCCCC
Q 016413 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW--VDRF----DMPKDMAHSHLGVVSDG-RYIYIVSGQYGPQCRGP 195 (390)
Q Consensus 123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~----~l~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~ 195 (390)
+++...+++|+|-|. .+|+++...... ..+. .+|. .-..+....+ +++|+|=|
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~---~IDAa~~~~~~~~~yfFkg--------- 70 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS---PVDAAFERPDTGKIYFFKG--------- 70 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC---CccEEEEECCCCEEEEECC---------
Confidence 445557899999663 367777542111 1111 1222 2233333333 89999965
Q ss_pred CceEEEEECCCCCeE---eCCCCCCCC--C-CceEEEE--CCEEEEEccC
Q 016413 196 TSRTFVLDSETRKWD---SIPPLPSPR--Y-SPATQLW--RGRLHVMGGS 237 (390)
Q Consensus 196 ~~~v~~yd~~~~~W~---~~~~~p~~r--~-~~~~~~~--~~~iyv~GG~ 237 (390)
+..|+|+..+..+. .+.....+. . --++... ++++|+|-|.
T Consensus 71 -~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~ 119 (194)
T cd00094 71 -DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD 119 (194)
T ss_pred -CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC
Confidence 45788876642221 111111111 1 1223333 5799999874
No 121
>PRK00178 tolB translocation protein TolB; Provisional
Probab=76.75 E-value=75 Score=30.72 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=69.5
Q ss_pred CceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCc
Q 016413 196 TSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPH 275 (390)
Q Consensus 196 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 275 (390)
...++++|+.+.+-+.+...+..-.......-+++|++..-..+ ...+..++ ..+.+.+.+...+.....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d-------~~~~~~~~lt~~~~~~~~ 291 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG---NPEIYVMD-------LASRQLSRVTNHPAIDTE 291 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC---CceEEEEE-------CCCCCeEEcccCCCCcCC
Confidence 45799999998887777644321111111122334544322111 12233333 456666665433221111
Q ss_pred eeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEc
Q 016413 276 RACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITG 354 (390)
Q Consensus 276 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~G 354 (390)
.....-+.+|++.....+. ..+|.+| .+.+++.+.... ...... ....+++.+++.
T Consensus 292 ~~~spDg~~i~f~s~~~g~--------------------~~iy~~d~~~g~~~~lt~~~--~~~~~~-~~Spdg~~i~~~ 348 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGGK--------------------PQIYKVNVNGGRAERVTFVG--NYNARP-RLSADGKTLVMV 348 (430)
T ss_pred eEECCCCCEEEEEECCCCC--------------------ceEEEEECCCCCEEEeecCC--CCccce-EECCCCCEEEEE
Confidence 1111223445554322211 2488888 666777664211 111111 122344444443
Q ss_pred CCCCCCCcceeeEEeeeEEEeecCccceeeccC
Q 016413 355 GTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYR 387 (390)
Q Consensus 355 G~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 387 (390)
...... .+++.+|+.+.....+..
T Consensus 349 ~~~~~~---------~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 349 HRQDGN---------FHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EccCCc---------eEEEEEECCCCCEEEccC
Confidence 322211 158899988877766543
No 122
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=76.64 E-value=83 Score=31.19 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=52.1
Q ss_pred CceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCC--C-CCcceEEEEeC-CEEEEEeceeCCCCCC
Q 016413 121 DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKD--M-AHSHLGVVSDG-RYIYIVSGQYGPQCRG 194 (390)
Q Consensus 121 ~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~--~-~r~~~~~~~~~-~~iyv~GG~~~~~~~~ 194 (390)
..+.++.+++||+.... ..+..+|+.+.+ |+.-...+.. . .-....+++.+ ++||+...
T Consensus 54 ~~sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------- 118 (488)
T cd00216 54 EGTPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------- 118 (488)
T ss_pred ccCCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--------
Confidence 33446779999986432 248888987654 8763322200 0 00111234556 78887432
Q ss_pred CCceEEEEECCCC--CeEeCCCCCC-CC--CCceEEEECCEEEE
Q 016413 195 PTSRTFVLDSETR--KWDSIPPLPS-PR--YSPATQLWRGRLHV 233 (390)
Q Consensus 195 ~~~~v~~yd~~~~--~W~~~~~~p~-~r--~~~~~~~~~~~iyv 233 (390)
...+..+|.++. .|+.-...+. .. ...+.++.++.+|+
T Consensus 119 -~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v 161 (488)
T cd00216 119 -DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII 161 (488)
T ss_pred -CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE
Confidence 356888888754 4876543221 00 12234556666665
No 123
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.62 E-value=53 Score=28.91 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=67.4
Q ss_pred EEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceE----EEE-eCCEEEEEeceeCCCCCCCCceE
Q 016413 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG----VVS-DGRYIYIVSGQYGPQCRGPTSRT 199 (390)
Q Consensus 125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~----~~~-~~~~iyv~GG~~~~~~~~~~~~v 199 (390)
.+.++.=+..||.+ ..+.++|..|.+=... -|.+.+ +.. ....+.+-|+++ ..+
T Consensus 67 ~s~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr-------~rgH~aqVNtV~fNeesSVv~SgsfD--------~s~ 125 (307)
T KOG0316|consen 67 LSSDNSKFASCGGD------KAVQVWDVNTGKVDRR-------FRGHLAQVNTVRFNEESSVVASGSFD--------SSV 125 (307)
T ss_pred ccccccccccCCCC------ceEEEEEcccCeeeee-------cccccceeeEEEecCcceEEEecccc--------cee
Confidence 34466666777665 3488999988864321 121111 111 234566777654 457
Q ss_pred EEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEe
Q 016413 200 FVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 200 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
.++|-..++-+++.-+...+.+-..+.+.+..+|.|..+ ..+..|++
T Consensus 126 r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~D-----GtvRtydi 172 (307)
T KOG0316|consen 126 RLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVD-----GTVRTYDI 172 (307)
T ss_pred EEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccC-----CcEEEEEe
Confidence 789988888888887888888888888888888887654 35677876
No 124
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=75.95 E-value=87 Score=31.06 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=47.2
Q ss_pred EEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCCC-----CCceEEEEC-CEEEEEccCCCCCCCCC
Q 016413 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPR-----YSPATQLWR-GRLHVMGGSKENRHTPG 245 (390)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r-----~~~~~~~~~-~~iyv~GG~~~~~~~~~ 245 (390)
-++.++.||+... ...+..+|..+. .|+.-...+..+ .....++.+ ++||+... ...
T Consensus 57 Pvv~~g~vy~~~~---------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~ 121 (488)
T cd00216 57 PLVVDGDMYFTTS---------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGR 121 (488)
T ss_pred CEEECCEEEEeCC---------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCe
Confidence 4567999998643 245788888754 487643222101 111234456 78887532 123
Q ss_pred cceEEeeeeccccccCCeEEccCCCC---CCCceeEEEECCEEEE
Q 016413 246 LEHWSIAVKDGKALEKAWRTEIPIPR---GGPHRACFVFNDRLFV 287 (390)
Q Consensus 246 ~~~~~~~~~~~~~~~~~W~~~~~~p~---~~~~~~~~~~~~~iyv 287 (390)
+..+|. +.....|+.-...+. .....+.++.++.+|+
T Consensus 122 v~AlD~-----~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v 161 (488)
T cd00216 122 LVALDA-----ETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII 161 (488)
T ss_pred EEEEEC-----CCCCEeeeecCCCCcCcceEecCCCEEECCEEEE
Confidence 344442 134556876433221 1112244566666654
No 125
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=74.15 E-value=63 Score=28.60 Aligned_cols=116 Identities=12% Similarity=0.171 Sum_probs=63.7
Q ss_pred CceeecCCCCC---CCCCc-ceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCE
Q 016413 155 NKWVDRFDMPK---DMAHS-HLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGR 230 (390)
Q Consensus 155 ~~W~~~~~l~~---~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 230 (390)
..|+...|+.. +++-- ...+.-..+.|+..|| -..++..|.++.+-+..-. -..-+-|+++.-+..
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---------D~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---------DGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecC---------CeEEEEEEecCCEEEEEEc-CCcceeeeeeecccC
Confidence 45877766544 22332 3333335677888887 3457888999887665321 122344555543222
Q ss_pred -EEEEccCCCCCCCCCcceEEeeeeccccccCCeEEc-c-----CCCCCCCce--eEEEECCEEEEEcCCC
Q 016413 231 -LHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE-I-----PIPRGGPHR--ACFVFNDRLFVVGGQE 292 (390)
Q Consensus 231 -iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-~-----~~p~~~~~~--~~~~~~~~iyv~GG~~ 292 (390)
=.+.|+. +..+..||. .+.+=.++ . .+-++..+. ++...+..-+|+||-.
T Consensus 169 ~qilsG~E-----DGtvRvWd~-------kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp 227 (325)
T KOG0649|consen 169 GQILSGAE-----DGTVRVWDT-------KTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP 227 (325)
T ss_pred cceeecCC-----CccEEEEec-------cccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC
Confidence 2334443 346788885 55555443 1 222332332 6667777788888753
No 126
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=73.83 E-value=87 Score=30.07 Aligned_cols=121 Identities=9% Similarity=0.172 Sum_probs=62.5
Q ss_pred ceEEEEe-CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEE-EECCEEEEEccCCCCCCCCCcce
Q 016413 171 HLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEH 248 (390)
Q Consensus 171 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~ 248 (390)
..+++++ ||.||..|-. -..+-.||.+... .++..|..-.--.+. .-+|--|+.-+.+ ...+..
T Consensus 350 ~ts~~fHpDgLifgtgt~--------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~l 415 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP--------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKL 415 (506)
T ss_pred eEEeeEcCCceEEeccCC--------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec----CCeEEE
Confidence 3344443 6777776632 3457788887765 555444311111222 2244445544443 234788
Q ss_pred EEeeeeccccccCCeEEccCCCCCCC-ceeEEEE--CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCC
Q 016413 249 WSIAVKDGKALEKAWRTEIPIPRGGP-HRACFVF--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM 324 (390)
Q Consensus 249 ~~~~~~~~~~~~~~W~~~~~~p~~~~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~ 324 (390)
||+. ... .++.++.... ......+ .|+.++++|.+- .||.|+ .+.
T Consensus 416 wDLR------Kl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l----------------------~Vy~~~k~~k 464 (506)
T KOG0289|consen 416 WDLR------KLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL----------------------QVYICKKKTK 464 (506)
T ss_pred EEeh------hhc---ccceeeccccccceeEEEcCCCCeEEeeccee----------------------EEEEEecccc
Confidence 8872 222 2222221111 1122233 466777776542 288888 688
Q ss_pred CeEECCCCCCCC
Q 016413 325 KWKVLPPMPKPN 336 (390)
Q Consensus 325 ~W~~~~~~~~~~ 336 (390)
.|+.+..++...
T Consensus 465 ~W~~~~~~~~~s 476 (506)
T KOG0289|consen 465 SWTEIKELADHS 476 (506)
T ss_pred cceeeehhhhcc
Confidence 999998776543
No 127
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=71.76 E-value=97 Score=29.73 Aligned_cols=240 Identities=13% Similarity=0.123 Sum_probs=112.9
Q ss_pred cccccccCCCCeEECCCCCCcCCCce-EEEECC-EEEEEecCCCCCC-----CCCeEEEEeCCCCcee--ecCCCCCCCC
Q 016413 98 TFADLPAPDLEWEQMPSAPVPRLDGA-AIQIKN-LFYVFAGYGSLDY-----VHSHVDVYNFTDNKWV--DRFDMPKDMA 168 (390)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~R~~~~-~~~~~~-~lyv~GG~~~~~~-----~~~~v~~yd~~~~~W~--~~~~l~~~~~ 168 (390)
.++.+|..+++... . ...+..+. ++-.++ +.++....+.... .-..|+++.+.+..-+ .+-.-+.+
T Consensus 151 ~l~v~Dl~tg~~l~--d-~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~-- 225 (414)
T PF02897_consen 151 TLRVFDLETGKFLP--D-GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDE-- 225 (414)
T ss_dssp EEEEEETTTTEEEE--E-EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTC--
T ss_pred EEEEEECCCCcCcC--C-cccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCC--
Confidence 46666666653221 1 11222233 444433 5555544443322 2467999998887654 33222221
Q ss_pred Cc-ceEEE-EeCCEEEEEeceeCCCCCCCCceEEEEECCCC-----CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCC
Q 016413 169 HS-HLGVV-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR-----KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR 241 (390)
Q Consensus 169 r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 241 (390)
.. ...+. ..+++..++.-..+. ..++++..|.... .|..+.+- ..-....+...++.+|+....+..
T Consensus 226 ~~~~~~~~~s~d~~~l~i~~~~~~----~~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~~a~- 299 (414)
T PF02897_consen 226 PFWFVSVSRSKDGRYLFISSSSGT----SESEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTNDDAP- 299 (414)
T ss_dssp TTSEEEEEE-TTSSEEEEEEESSS----SEEEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-TT-T-
T ss_pred CcEEEEEEecCcccEEEEEEEccc----cCCeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCCCCC-
Confidence 22 22332 334443333222211 1378999999875 78887642 222223344568999998653221
Q ss_pred CCCCcceEEeeeeccccccCCeEE-ccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEee
Q 016413 242 HTPGLEHWSIAVKDGKALEKAWRT-EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYML 320 (390)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~W~~-~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 320 (390)
...+...++ .+ +....|.. +.+-.....-..+.+.++.|++.-=.++ ...+.++
T Consensus 300 -~~~l~~~~l--~~--~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~--------------------~~~l~v~ 354 (414)
T PF02897_consen 300 -NGRLVAVDL--AD--PSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG--------------------SSRLRVY 354 (414)
T ss_dssp -T-EEEEEET--TS--TSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT--------------------EEEEEEE
T ss_pred -CcEEEEecc--cc--cccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC--------------------ccEEEEE
Confidence 122222222 11 22224664 3333322223356677888887744332 2458889
Q ss_pred CCCCCeEECC-CCCCCCCcceeEEEEE---CCEEE-EEcCCCCCCCcceeeEEeeeEEEeecCccceeecc
Q 016413 321 DDEMKWKVLP-PMPKPNSHIECAWVIV---NNSII-ITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHY 386 (390)
Q Consensus 321 d~~~~W~~~~-~~~~~~~~~~~~~~~~---~~~l~-v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 386 (390)
|....|.... ++|. ... +..+.. .+.++ .+.+... -..++.||+++++...+.
T Consensus 355 ~~~~~~~~~~~~~p~--~g~-v~~~~~~~~~~~~~~~~ss~~~----------P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 355 DLDDGKESREIPLPE--AGS-VSGVSGDFDSDELRFSYSSFTT----------PPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ETT-TEEEEEEESSS--SSE-EEEEES-TT-SEEEEEEEETTE----------EEEEEEEETTTTCEEEEE
T ss_pred ECCCCcEEeeecCCc--ceE-EeccCCCCCCCEEEEEEeCCCC----------CCEEEEEECCCCCEEEEE
Confidence 8333343332 2332 211 111111 23333 3555542 347999999999877653
No 128
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.06 E-value=84 Score=28.48 Aligned_cols=71 Identities=11% Similarity=0.242 Sum_probs=46.5
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 207 (390)
.+++++. +....++.+|||...+|.+- +||...+|.....+-..+.++.-- -..+.+.+||+++.
T Consensus 243 ig~~wit------twg~g~l~rfdPs~~sW~ey-pLPgs~arpys~rVD~~grVW~se--------a~agai~rfdpeta 307 (353)
T COG4257 243 IGRAWIT------TWGTGSLHRFDPSVTSWIEY-PLPGSKARPYSMRVDRHGRVWLSE--------ADAGAIGRFDPETA 307 (353)
T ss_pred cCcEEEe------ccCCceeeEeCcccccceee-eCCCCCCCcceeeeccCCcEEeec--------cccCceeecCcccc
Confidence 3567765 11235699999999999884 345433455544444556666631 22567889999998
Q ss_pred CeEeCC
Q 016413 208 KWDSIP 213 (390)
Q Consensus 208 ~W~~~~ 213 (390)
+.+.++
T Consensus 308 ~ftv~p 313 (353)
T COG4257 308 RFTVLP 313 (353)
T ss_pred eEEEec
Confidence 888764
No 129
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=65.99 E-value=1e+02 Score=27.65 Aligned_cols=205 Identities=13% Similarity=0.149 Sum_probs=92.3
Q ss_pred eEEEECCEEEEE--ecC-CCCCCCCCeEEEEeC-CCCceee---cCCCCC--C-CCCcceEEEEeCCEEEEEeceeCCCC
Q 016413 123 AAIQIKNLFYVF--AGY-GSLDYVHSHVDVYNF-TDNKWVD---RFDMPK--D-MAHSHLGVVSDGRYIYIVSGQYGPQC 192 (390)
Q Consensus 123 ~~~~~~~~lyv~--GG~-~~~~~~~~~v~~yd~-~~~~W~~---~~~l~~--~-~~r~~~~~~~~~~~iyv~GG~~~~~~ 192 (390)
-+.++++-||.- +|. .+... +.-.|+=.- ..++|+. +.++.. | ..-.++++.+++++||.+=-......
T Consensus 20 KaFVy~~VIYAPfM~~~RHGv~~-LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~ 98 (367)
T PF12217_consen 20 KAFVYDNVIYAPFMAGDRHGVDN-LHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVAS 98 (367)
T ss_dssp --EEETTEEEEEEEEESSSSSTT--EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT
T ss_pred cceeecCeeecccccccccCccc-eEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhh
Confidence 356677777752 333 22222 233344322 3567864 222221 1 22456677789999999865433222
Q ss_pred CCCCceEEEEE---CCCCCeEeC--CCCCC-------CCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeecccccc
Q 016413 193 RGPTSRTFVLD---SETRKWDSI--PPLPS-------PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE 260 (390)
Q Consensus 193 ~~~~~~v~~yd---~~~~~W~~~--~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 260 (390)
+.+...+.|| .....|++- +..|. .-.-|+.+.+++.-|.+|=.+++..-..+-.+.+ +
T Consensus 99 -~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yf--------s 169 (367)
T PF12217_consen 99 -NKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYF--------S 169 (367)
T ss_dssp ---EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEE--------T
T ss_pred -hhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEe--------c
Confidence 3355566666 356778654 33332 2345788888888888886654432222222211 2
Q ss_pred CCeEE--------cc-CCCCCCCceeEEEECCEEEEEc-CCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEEC
Q 016413 261 KAWRT--------EI-PIPRGGPHRACFVFNDRLFVVG-GQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL 329 (390)
Q Consensus 261 ~~W~~--------~~-~~p~~~~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~ 329 (390)
+.|.. ++ ...+.....+.-.+++.||+.- |..+.. .=+.+.+-+ ....|+.+
T Consensus 170 ~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~-----------------~GS~L~rs~d~G~~w~sl 232 (367)
T PF12217_consen 170 DAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTN-----------------PGSSLHRSDDNGQNWSSL 232 (367)
T ss_dssp TTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS--------------------EEEEESSTTSS-EEE
T ss_pred ccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCC-----------------CcceeeeecccCCchhhc
Confidence 23322 21 1222223345567899999873 333211 112355555 66789876
Q ss_pred CCCCCCCCcceeEEEEECCEEEEEcC
Q 016413 330 PPMPKPNSHIECAWVIVNNSIIITGG 355 (390)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~v~GG 355 (390)
. .|........-.+.+++.||+||-
T Consensus 233 r-fp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 233 R-FPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp E--TT---SS---EEEETTEEEEEEE
T ss_pred c-ccccccccCCCceeeCCEEEEEec
Confidence 3 333232222334788999999984
No 130
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=65.40 E-value=1e+02 Score=27.48 Aligned_cols=125 Identities=15% Similarity=0.167 Sum_probs=60.2
Q ss_pred CceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCc
Q 016413 196 TSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPH 275 (390)
Q Consensus 196 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 275 (390)
...|-.+|..+.+=.+--..+.+.... -+..+++|..+- +-..+..|+. .+-.--+--.||....+
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSl-Evs~dG~ilTia------~gssV~Fwda-------ksf~~lKs~k~P~nV~S 229 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSL-EVSQDGRILTIA------YGSSVKFWDA-------KSFGLLKSYKMPCNVES 229 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcce-eeccCCCEEEEe------cCceeEEecc-------ccccceeeccCcccccc
Confidence 355667777665432211222222211 123355555542 1224555552 22221122346665542
Q ss_pred eeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCC-eEEC-CCCCCCCCcceeEEEEECCEEEE
Q 016413 276 RACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK-WKVL-PPMPKPNSHIECAWVIVNNSIII 352 (390)
Q Consensus 276 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~-W~~~-~~~~~~~~~~~~~~~~~~~~l~v 352 (390)
++. .-+..+||.||.+.. ++.|| .+.. -... ..-+.|. + |.-...+|.+|.
T Consensus 230 ASL-~P~k~~fVaGged~~----------------------~~kfDy~TgeEi~~~nkgh~gpV--h-cVrFSPdGE~yA 283 (334)
T KOG0278|consen 230 ASL-HPKKEFFVAGGEDFK----------------------VYKFDYNTGEEIGSYNKGHFGPV--H-CVRFSPDGELYA 283 (334)
T ss_pred ccc-cCCCceEEecCcceE----------------------EEEEeccCCceeeecccCCCCce--E-EEEECCCCceee
Confidence 222 224479999998643 88888 6543 2221 1122222 1 111334899999
Q ss_pred EcCCCCCC
Q 016413 353 TGGTTEKH 360 (390)
Q Consensus 353 ~GG~~~~~ 360 (390)
.|-.++.-
T Consensus 284 sGSEDGTi 291 (334)
T KOG0278|consen 284 SGSEDGTI 291 (334)
T ss_pred ccCCCceE
Confidence 99887664
No 131
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=65.00 E-value=8.9 Score=35.65 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=56.5
Q ss_pred cccccccCCCC--eE-ECCCCCCcCCC-----ceEEE-EC-CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC--
Q 016413 98 TFADLPAPDLE--WE-QMPSAPVPRLD-----GAAIQ-IK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-- 165 (390)
Q Consensus 98 ~~~~~~~~~~~--W~-~~~~~~~~R~~-----~~~~~-~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~-- 165 (390)
.+..||..+.+ ++ .+|+. +|.. +.... -+ ..+||. +..+..+|-+-|+..++-...-+.|-
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k--~R~~~~~~~~~~~ls~dgk~~~V~-----N~TPa~SVtVVDl~~~kvv~ei~~PGC~ 140 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPK--PRAQVVPYKNMFALSADGKFLYVQ-----NFTPATSVTVVDLAAKKVVGEIDTPGCW 140 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS---B--BS--GGGEEE-TTSSEEEEE-----EESSSEEEEEEETTTTEEEEEEEGTSEE
T ss_pred EEEEEecCcCcccceEecCCc--chheecccccceEEccCCcEEEEE-----ccCCCCeEEEEECCCCceeeeecCCCEE
Confidence 67788888773 32 23322 2331 12222 23 356765 22345789999999998754322221
Q ss_pred ---CC-CCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEE
Q 016413 166 ---DM-AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVM 234 (390)
Q Consensus 166 ---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 234 (390)
|. .|.+.+.+..+..+.|.=+.++... ...-..|+++.+-.-.-+.........-...++|.+|-+
T Consensus 141 ~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~ 210 (342)
T PF06433_consen 141 LIYPSGNRGFSMLCGDGSLLTVTLDADGKEA---QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSA 210 (342)
T ss_dssp EEEEEETTEEEEEETTSCEEEEEETSTSSEE---EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEE
T ss_pred EEEecCCCceEEEecCCceEEEEECCCCCEe---EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEE
Confidence 11 1323222222222222222222221 233357777665332222211111123335778888884
No 132
>PRK02889 tolB translocation protein TolB; Provisional
Probab=64.37 E-value=1.4e+02 Score=28.87 Aligned_cols=63 Identities=10% Similarity=0.084 Sum_probs=32.4
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCC
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 215 (390)
..++..|.....-+.+...+.+ -......-.+.+|+ +..... ....++++|+.+.+=+.+...
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~--v~~p~wSPDG~~la-~~s~~~-----~~~~I~~~dl~~g~~~~l~~~ 238 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEP--IISPAWSPDGTKLA-YVSFES-----KKPVVYVHDLATGRRRVVANF 238 (427)
T ss_pred cEEEEECCCCCCceEeccCCCC--cccceEcCCCCEEE-EEEccC-----CCcEEEEEECCCCCEEEeecC
Confidence 4688888866555554332221 12222222334444 333221 135699999987765555433
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=63.90 E-value=1.2e+02 Score=27.77 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=47.5
Q ss_pred eEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEE
Q 016413 146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ 225 (390)
Q Consensus 146 ~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 225 (390)
++-.||..+++-...-....| -..++..+..=.++||.++ .+-+||..+..=..+..--.+-.+-.-
T Consensus 36 slrlYdv~~~~l~~~~~~~~p----lL~c~F~d~~~~~~G~~dg--------~vr~~Dln~~~~~~igth~~~i~ci~~- 102 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFKHGAP----LLDCAFADESTIVTGGLDG--------QVRRYDLNTGNEDQIGTHDEGIRCIEY- 102 (323)
T ss_pred cEEEEeccchhhhhheecCCc----eeeeeccCCceEEEeccCc--------eEEEEEecCCcceeeccCCCceEEEEe-
Confidence 477888888843222111111 2234445555566676543 477899988765555432222111111
Q ss_pred EECCEEEEEccCCCCCCCCCcceEEe
Q 016413 226 LWRGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 226 ~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
......+|.||++ ..+..||.
T Consensus 103 ~~~~~~vIsgsWD-----~~ik~wD~ 123 (323)
T KOG1036|consen 103 SYEVGCVISGSWD-----KTIKFWDP 123 (323)
T ss_pred eccCCeEEEcccC-----ccEEEEec
Confidence 1234567788875 56788884
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=63.90 E-value=1.4e+02 Score=28.79 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=34.6
Q ss_pred CceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCc-ceEEEEeCCEEEEEeceeCC
Q 016413 121 DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHS-HLGVVSDGRYIYIVSGQYGP 190 (390)
Q Consensus 121 ~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~-~~~~~~~~~~iyv~GG~~~~ 190 (390)
-++++..+.-.|++||.-. .+++++.+.+..-..+- +.. -+. .+-....|+..++.||.|+.
T Consensus 84 v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~-~aH--YQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVL-SAH--YQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHH-Hhh--ccceeEEEEeCCCcEEEecCCCcc
Confidence 3566666777888888432 24788777776533221 010 011 11122357888888887653
No 135
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=62.94 E-value=1.4e+02 Score=28.23 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=52.9
Q ss_pred EEEECCEEEEEecCCCCCCCCCeEEEEeCCCCc--eeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEE
Q 016413 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV 201 (390)
Q Consensus 124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 201 (390)
.+..++++|+. -.+ -.+..+|+.+.+ |+....-.. ..........+++||+-.. ...+++
T Consensus 64 ~~~~dg~v~~~-~~~------G~i~A~d~~~g~~~W~~~~~~~~--~~~~~~~~~~~G~i~~g~~---------~g~~y~ 125 (370)
T COG1520 64 PADGDGTVYVG-TRD------GNIFALNPDTGLVKWSYPLLGAV--AQLSGPILGSDGKIYVGSW---------DGKLYA 125 (370)
T ss_pred cEeeCCeEEEe-cCC------CcEEEEeCCCCcEEecccCcCcc--eeccCceEEeCCeEEEecc---------cceEEE
Confidence 36678899997 111 158999999877 975432101 1112223334788776543 226889
Q ss_pred EECC--CCCeEeCCCCCCCCCCceEEEECCEEEEE
Q 016413 202 LDSE--TRKWDSIPPLPSPRYSPATQLWRGRLHVM 234 (390)
Q Consensus 202 yd~~--~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 234 (390)
||.. +..|+.-.+.. ++..-..++.++.+|+.
T Consensus 126 ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~ 159 (370)
T COG1520 126 LDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVG 159 (370)
T ss_pred EECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEe
Confidence 9985 44687755442 33434445556666666
No 136
>PRK03629 tolB translocation protein TolB; Provisional
Probab=62.70 E-value=1.5e+02 Score=28.69 Aligned_cols=204 Identities=8% Similarity=-0.020 Sum_probs=90.6
Q ss_pred EEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeE
Q 016413 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWD 210 (390)
Q Consensus 131 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 210 (390)
+||.-..+. ....++++.|.....=+.+..-+. .-...... -+++.+++-.... ....++++|+.+.+-+
T Consensus 167 ayv~~~~~~--~~~~~l~~~d~dg~~~~~lt~~~~--~~~~p~wS-PDG~~la~~s~~~-----g~~~i~i~dl~~G~~~ 236 (429)
T PRK03629 167 AYVVQTNGG--QFPYELRVSDYDGYNQFVVHRSPQ--PLMSPAWS-PDGSKLAYVTFES-----GRSALVIQTLANGAVR 236 (429)
T ss_pred EEEEeeCCC--CcceeEEEEcCCCCCCEEeecCCC--ceeeeEEc-CCCCEEEEEEecC-----CCcEEEEEECCCCCeE
Confidence 466543322 224579999876543233322221 11122222 3443333322111 1357889999887766
Q ss_pred eCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcC
Q 016413 211 SIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG 290 (390)
Q Consensus 211 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG 290 (390)
.+...+..-.......-+.+|++.....+ ...+..|+ ..+.+.+.+...+..... ....-+++.+++..
T Consensus 237 ~l~~~~~~~~~~~~SPDG~~La~~~~~~g---~~~I~~~d-------~~tg~~~~lt~~~~~~~~-~~wSPDG~~I~f~s 305 (429)
T PRK03629 237 QVASFPRHNGAPAFSPDGSKLAFALSKTG---SLNLYVMD-------LASGQIRQVTDGRSNNTE-PTWFPDSQNLAYTS 305 (429)
T ss_pred EccCCCCCcCCeEECCCCCEEEEEEcCCC---CcEEEEEE-------CCCCCEEEccCCCCCcCc-eEECCCCCEEEEEe
Confidence 66654432222122222335555432221 11233444 345555555433221111 12222444333333
Q ss_pred CCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEe
Q 016413 291 QEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILV 369 (390)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~ 369 (390)
.... ...+|.+| .+.+-+.+...... ........+|+.+++.+.....
T Consensus 306 ~~~g-------------------~~~Iy~~d~~~g~~~~lt~~~~~---~~~~~~SpDG~~Ia~~~~~~g~--------- 354 (429)
T PRK03629 306 DQAG-------------------RPQVYKVNINGGAPQRITWEGSQ---NQDADVSSDGKFMVMVSSNGGQ--------- 354 (429)
T ss_pred CCCC-------------------CceEEEEECCCCCeEEeecCCCC---ccCEEECCCCCEEEEEEccCCC---------
Confidence 2211 12488888 55555555322111 1111123455555554433222
Q ss_pred eeEEEeecCccceeecc
Q 016413 370 GEVFQFHLDSLVIIYHY 386 (390)
Q Consensus 370 ~~v~~yd~~~~~W~~v~ 386 (390)
.+++.+|++++.+..+.
T Consensus 355 ~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 355 QHIAKQDLATGGVQVLT 371 (429)
T ss_pred ceEEEEECCCCCeEEeC
Confidence 15888999888877665
No 137
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=62.56 E-value=1.4e+02 Score=28.18 Aligned_cols=225 Identities=13% Similarity=0.069 Sum_probs=109.0
Q ss_pred HHhhccEEEEecCCCCCCCccccceeeeeccCCCc--eEeecC----CCCCccccccceEEEecCCCchhHHHhhhcccc
Q 016413 28 AALIADFMWASSSSSFSSSSAHLSVASNWALEKSG--VVVIPH----VNATKIDRQRESVAVIDKKGQDAERFLSATFAD 101 (390)
Q Consensus 28 ~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~--W~~l~~----~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (390)
.+..++.+|+. ..++ .+.++|+.+.. |..... +...|.. ...+...... .+..+++
T Consensus 64 ~~~~dg~v~~~--~~~G-------~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~-~~~G~i~~g~--------~~g~~y~ 125 (370)
T COG1520 64 PADGDGTVYVG--TRDG-------NIFALNPDTGLVKWSYPLLGAVAQLSGPIL-GSDGKIYVGS--------WDGKLYA 125 (370)
T ss_pred cEeeCCeEEEe--cCCC-------cEEEEeCCCCcEEecccCcCcceeccCceE-EeCCeEEEec--------ccceEEE
Confidence 46777888886 2234 78889988876 855333 1111111 1112222211 1116788
Q ss_pred cccCC--CCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCC--ceeecCCCCCCCCCcceEEEEe
Q 016413 102 LPAPD--LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMAHSHLGVVSD 177 (390)
Q Consensus 102 ~~~~~--~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~l~~~~~r~~~~~~~~ 177 (390)
+|..+ ..|+.-.+.. ++.....+..++.+|+-- + ...+.++|..+. .|+.-.+.+.+ .+...+.+..
T Consensus 126 ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s--~-----~g~~~al~~~tG~~~W~~~~~~~~~-~~~~~~~~~~ 196 (370)
T COG1520 126 LDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT--D-----DGHLYALNADTGTLKWTYETPAPLS-LSIYGSPAIA 196 (370)
T ss_pred EECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEec--C-----CCeEEEEEccCCcEEEEEecCCccc-cccccCceee
Confidence 88843 4786644332 444444555666777653 1 135788887754 58743322111 1333333366
Q ss_pred CCEEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCCCCCc--eEEEECCEEEEEccCCCCCCCCCcceEEeee
Q 016413 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPRYSP--ATQLWRGRLHVMGGSKENRHTPGLEHWSIAV 253 (390)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 253 (390)
++.+|+-.-- . ...++.+|+++. .|+.-...+..+..- ......+.||+-++...........+++
T Consensus 197 ~~~vy~~~~~-~------~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~--- 266 (370)
T COG1520 197 SGTVYVGSDG-Y------DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLD--- 266 (370)
T ss_pred cceEEEecCC-C------cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEE---
Confidence 7777775321 0 226888998665 488543233222211 1234445555555421111112233333
Q ss_pred eccccccCCeEEccCCCC---CCCceeEEEECCEEEEEcCC
Q 016413 254 KDGKALEKAWRTEIPIPR---GGPHRACFVFNDRLFVVGGQ 291 (390)
Q Consensus 254 ~~~~~~~~~W~~~~~~p~---~~~~~~~~~~~~~iyv~GG~ 291 (390)
.+..+..|+.-.+... +........-++++|+....
T Consensus 267 --~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~ 305 (370)
T COG1520 267 --ADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTD 305 (370)
T ss_pred --cCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEec
Confidence 2245667877654221 11111222247788876543
No 138
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=61.09 E-value=1.2e+02 Score=26.91 Aligned_cols=150 Identities=21% Similarity=0.322 Sum_probs=77.3
Q ss_pred CeEECCCCCC-----cCCCceEEE-ECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeC-CE
Q 016413 108 EWEQMPSAPV-----PRLDGAAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG-RY 180 (390)
Q Consensus 108 ~W~~~~~~~~-----~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~-~~ 180 (390)
-|+...|+.. |--+..... -.+.|+..||-. .+++.|+++.+-+..-.-. .-+-|+++.-+ +-
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREYRGH---TDYVHSVVGRNANG 169 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEEcCC---cceeeeeeecccCc
Confidence 5666655432 322222222 257788888632 4888999999877642211 23456666522 22
Q ss_pred EEEEeceeCCCCCCCCceEEEEECCCCCeEeC-CC-----CCCCCCCc--eEEEECCEEEEEccCCCCCCCCCcceEEee
Q 016413 181 IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI-PP-----LPSPRYSP--ATQLWRGRLHVMGGSKENRHTPGLEHWSIA 252 (390)
Q Consensus 181 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~-----~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 252 (390)
=.+.|+.++ .+-++|.++.+-.++ .+ ...|..+- .+...+..-.|+||- +....|.+
T Consensus 170 qilsG~EDG--------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhL- 234 (325)
T KOG0649|consen 170 QILSGAEDG--------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHL- 234 (325)
T ss_pred ceeecCCCc--------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEec-
Confidence 234455443 355677777665443 22 22222222 444556666777764 34556665
Q ss_pred eeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCC
Q 016413 253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQ 291 (390)
Q Consensus 253 ~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~ 291 (390)
.+.+=+.+-|+|... .-+.+.++..++||.
T Consensus 235 ------rsse~t~vfpipa~v---~~v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 235 ------RSSESTCVFPIPARV---HLVDFVDDCVLIGGE 264 (325)
T ss_pred ------cCCCceEEEecccce---eEeeeecceEEEecc
Confidence 334434444555443 234445555555553
No 139
>PRK02889 tolB translocation protein TolB; Provisional
Probab=60.92 E-value=1.6e+02 Score=28.44 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=34.9
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (390)
..++.+|+.+.+=..+...+. .....+..-.+.+|++....++ ..+++.+|......+.+..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG--SNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEEccCC------CceEEEEECCCCCcEECCC
Confidence 469999998876555544332 1122222223445655433222 4679999988777666653
No 140
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=59.73 E-value=1.8e+02 Score=28.48 Aligned_cols=88 Identities=6% Similarity=0.122 Sum_probs=52.9
Q ss_pred CCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEec
Q 016413 107 LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG 186 (390)
Q Consensus 107 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG 186 (390)
.+.+++-.|+.-- .+-+.++++||.+--.++.. .++.-|+..+.-+.-++...--+| -+..+|+=.||-
T Consensus 216 ~tFeK~vdl~~~v--S~PmIV~~RvYFlsD~eG~G----nlYSvdldGkDlrrHTnFtdYY~R----~~nsDGkrIvFq- 284 (668)
T COG4946 216 KTFEKFVDLDGNV--SSPMIVGERVYFLSDHEGVG----NLYSVDLDGKDLRRHTNFTDYYPR----NANSDGKRIVFQ- 284 (668)
T ss_pred cceeeeeecCCCc--CCceEEcceEEEEecccCcc----ceEEeccCCchhhhcCCchhcccc----ccCCCCcEEEEe-
Confidence 3444444444322 22356799999998777654 366677777665554444331122 234566666662
Q ss_pred eeCCCCCCCCceEEEEECCCCCeEeCC
Q 016413 187 QYGPQCRGPTSRTFVLDSETRKWDSIP 213 (390)
Q Consensus 187 ~~~~~~~~~~~~v~~yd~~~~~W~~~~ 213 (390)
...+++.|||+++.-+++.
T Consensus 285 --------~~GdIylydP~td~lekld 303 (668)
T COG4946 285 --------NAGDIYLYDPETDSLEKLD 303 (668)
T ss_pred --------cCCcEEEeCCCcCcceeee
Confidence 2467899999998887774
No 141
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=59.40 E-value=69 Score=30.72 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=23.2
Q ss_pred CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC
Q 016413 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK 165 (390)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~ 165 (390)
++..+++|.+ -.|+.|+-.+.+|+.+..++.
T Consensus 444 Gt~L~~~g~~------l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 444 GTYLGIAGSD------LQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred CCeEEeecce------eEEEEEecccccceeeehhhh
Confidence 4566666544 248888999999999877765
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=59.15 E-value=81 Score=28.78 Aligned_cols=37 Identities=8% Similarity=0.009 Sum_probs=26.4
Q ss_pred HHhhccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCC
Q 016413 28 AALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNAT 72 (390)
Q Consensus 28 ~~~~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~ 72 (390)
++..++.=.+.||. ++ .+..||+++..-..+.....+
T Consensus 60 c~F~d~~~~~~G~~-dg-------~vr~~Dln~~~~~~igth~~~ 96 (323)
T KOG1036|consen 60 CAFADESTIVTGGL-DG-------QVRRYDLNTGNEDQIGTHDEG 96 (323)
T ss_pred eeccCCceEEEecc-Cc-------eEEEEEecCCcceeeccCCCc
Confidence 34455666677888 77 888999988887777665443
No 143
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=59.00 E-value=1.2e+02 Score=30.31 Aligned_cols=118 Identities=13% Similarity=0.231 Sum_probs=61.4
Q ss_pred CCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEEC--CEEEEEcC
Q 016413 215 LPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFN--DRLFVVGG 290 (390)
Q Consensus 215 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~--~~iyv~GG 290 (390)
+..|+.+..++.. +-.||+.|-. ..++++++ +...|-..-..-.+ ..-++.++ +.|+.+||
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg------~evYRlNL-------EqGrfL~P~~~~~~--~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSG------SEVYRLNL-------EQGRFLNPFETDSG--ELNVVSINEEHGLLACGT 194 (703)
T ss_pred eecCcCCccccccCCCccEEEeecC------cceEEEEc-------cccccccccccccc--cceeeeecCccceEEecc
Confidence 4556666666543 4467777632 34555554 55665432211111 12333333 55889999
Q ss_pred CCCCCCCCCCCCccccccccceecCcEEeeCC-CC-CeEE------CCCCCCCCCcceeEEEEECC-EEEEEcCCCCCCC
Q 016413 291 QEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDD-EM-KWKV------LPPMPKPNSHIECAWVIVNN-SIIITGGTTEKHP 361 (390)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~-~~-~W~~------~~~~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~ 361 (390)
.++. |+.+|+ +. .-.. +...|..-....++++.+.+ -|-+.-|....
T Consensus 195 ~~g~----------------------VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-- 250 (703)
T KOG2321|consen 195 EDGV----------------------VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-- 250 (703)
T ss_pred cCce----------------------EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC--
Confidence 7764 888884 22 1111 22333333333445555555 66666665544
Q ss_pred cceeeEEeeeEEEeecCcc
Q 016413 362 MTKRMILVGEVFQFHLDSL 380 (390)
Q Consensus 362 ~~~~~~~~~~v~~yd~~~~ 380 (390)
.+++||+.+.
T Consensus 251 ---------~v~iyDLRa~ 260 (703)
T KOG2321|consen 251 ---------SVLIYDLRAS 260 (703)
T ss_pred ---------cEEEEEcccC
Confidence 3788887554
No 144
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=58.31 E-value=1.8e+02 Score=28.09 Aligned_cols=78 Identities=18% Similarity=0.086 Sum_probs=52.0
Q ss_pred CceEEEECCEEEEE---ecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCc
Q 016413 121 DGAAIQIKNLFYVF---AGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTS 197 (390)
Q Consensus 121 ~~~~~~~~~~lyv~---GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 197 (390)
.+++.-+++.+=|+ |-+.....+.++++++|-..|-=-.+..+... -.-+++-..++.+|++-= +..+
T Consensus 379 ~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGkltGl~~g--ERIYAvRf~gdv~yiVTf-------rqtD 449 (603)
T COG4880 379 SFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLTGLAPG--ERIYAVRFVGDVLYIVTF-------RQTD 449 (603)
T ss_pred cccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEeccCCC--ceEEEEEEeCceEEEEEE-------eccC
Confidence 45555566665555 44444455678999999988877777766653 335567778999999852 3355
Q ss_pred eEEEEECCCC
Q 016413 198 RTFVLDSETR 207 (390)
Q Consensus 198 ~v~~yd~~~~ 207 (390)
-+++.|++.-
T Consensus 450 PlfviDlsNP 459 (603)
T COG4880 450 PLFVIDLSNP 459 (603)
T ss_pred ceEEEEcCCC
Confidence 6777777653
No 145
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=56.77 E-value=1.5e+02 Score=26.51 Aligned_cols=171 Identities=10% Similarity=0.179 Sum_probs=0.0
Q ss_pred EeCCCCceeecC-----CCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceE
Q 016413 150 YNFTDNKWVDRF-----DMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (390)
Q Consensus 150 yd~~~~~W~~~~-----~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 224 (390)
||..-.-|+... ..+.+-.....-...-+++..+.+| ...+-.||+.++.=..+...-.++..-.+
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~---------~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG---------NQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc---------CCeeEEEEccCCCCCceeEEeccCCceEE
Q ss_pred E--EECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCC
Q 016413 225 Q--LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSP 302 (390)
Q Consensus 225 ~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 302 (390)
+ ..+++...-||.++ .+.+||+ ..-.-.+.-..+.+-. .++.+-++-=++-|-+...
T Consensus 89 VgF~~dgrWMyTgseDg-----t~kIWdl-------R~~~~qR~~~~~spVn--~vvlhpnQteLis~dqsg~------- 147 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDG-----TVKIWDL-------RSLSCQRNYQHNSPVN--TVVLHPNQTELISGDQSGN------- 147 (311)
T ss_pred EEEeecCeEEEecCCCc-----eEEEEec-------cCcccchhccCCCCcc--eEEecCCcceEEeecCCCc-------
Q ss_pred ccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeec
Q 016413 303 IFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHL 377 (390)
Q Consensus 303 ~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~ 377 (390)
|++.| .++.-... .+|.+.....-..+..+|++++..-..++ .|++++
T Consensus 148 --------------irvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnkG~------------cyvW~l 196 (311)
T KOG0315|consen 148 --------------IRVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNKGN------------CYVWRL 196 (311)
T ss_pred --------------EEEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEEEecCCcc------------EEEEEc
No 146
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=55.84 E-value=1.1e+02 Score=24.97 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=49.9
Q ss_pred EEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCC----CceEE-EECCEEEEEccCCCCCCCCCcceE
Q 016413 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY----SPATQ-LWRGRLHVMGGSKENRHTPGLEHW 249 (390)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~----~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~ 249 (390)
+.++|.+|=+.-...... ...+..||..+.+.+...++|.... ...+. +.+++|-++--. ......+.|
T Consensus 2 V~vnG~~hW~~~~~~~~~---~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~---~~~~~~~IW 75 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE---KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC---DETSKIEIW 75 (164)
T ss_pred EEECCEEEeeEEecCCCC---ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec---cCCccEEEE
Confidence 567888888876443321 2269999999999933334443322 22232 236778777321 112347888
Q ss_pred EeeeeccccccCCeEEcc
Q 016413 250 SIAVKDGKALEKAWRTEI 267 (390)
Q Consensus 250 ~~~~~~~~~~~~~W~~~~ 267 (390)
-+.-+++. ..+|+++-
T Consensus 76 vm~~~~~~--~~SWtK~~ 91 (164)
T PF07734_consen 76 VMKKYGYG--KESWTKLF 91 (164)
T ss_pred EEeeeccC--cceEEEEE
Confidence 77544433 78999863
No 147
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=55.65 E-value=1.7e+02 Score=27.04 Aligned_cols=186 Identities=14% Similarity=0.275 Sum_probs=85.6
Q ss_pred ceEEEECCEEEEEecCC-C---CCCCCCeEEEEe-CCCCceeecCC-CC--CC---CCCcceEEEEeCCEEEEEeceeCC
Q 016413 122 GAAIQIKNLFYVFAGYG-S---LDYVHSHVDVYN-FTDNKWVDRFD-MP--KD---MAHSHLGVVSDGRYIYIVSGQYGP 190 (390)
Q Consensus 122 ~~~~~~~~~lyv~GG~~-~---~~~~~~~v~~yd-~~~~~W~~~~~-l~--~~---~~r~~~~~~~~~~~iyv~GG~~~~ 190 (390)
++++.+++.|+++.... . .......+..|. ....+|..... +. .. .....+.+++-+++||++=|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 46788899999997531 1 122233334443 45568976431 11 11 112456777889999998765443
Q ss_pred CCCCCCceEEEEE--CCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCC----C--------CCCCCcc-eEEeeeec
Q 016413 191 QCRGPTSRTFVLD--SETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE----N--------RHTPGLE-HWSIAVKD 255 (390)
Q Consensus 191 ~~~~~~~~v~~yd--~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~----~--------~~~~~~~-~~~~~~~~ 255 (390)
......-.+..+- ....+|....+++..-.. ..+.++-||-++ + ......+ .+.+.+|.
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~------~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS 155 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQ------SWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYS 155 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-E------EEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEE
T ss_pred cccccccceeeeeccCCcceeeecccCCchhcc------ccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEE
Confidence 2111123344332 233469887655532110 001233333111 0 0112223 57777776
Q ss_pred cccccCCeEEccCCCCCC-CceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEE-CCC
Q 016413 256 GKALEKAWRTEIPIPRGG-PHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKV-LPP 331 (390)
Q Consensus 256 ~~~~~~~W~~~~~~p~~~-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~-~~~ 331 (390)
-| ....|+....++... ..++++.. +++|+++.-.+... ..||.=. -.++|+. +..
T Consensus 156 ~d-~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~-------------------rrVYeS~DmG~tWtea~gt 215 (310)
T PF13859_consen 156 TD-DGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGR-------------------RRVYESGDMGTTWTEALGT 215 (310)
T ss_dssp SS-TTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS----------------------EEEESSTTSS-EE-TTT
T ss_pred CC-CccceEeccccCCCCcceEEEEeccCCeeEEEEecccce-------------------EEEEEEcccceehhhccCc
Confidence 33 478999876665433 34567777 78999886655431 1366554 5669998 444
Q ss_pred CC
Q 016413 332 MP 333 (390)
Q Consensus 332 ~~ 333 (390)
++
T Consensus 216 ls 217 (310)
T PF13859_consen 216 LS 217 (310)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 148
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=54.18 E-value=42 Score=30.02 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=21.4
Q ss_pred ECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC
Q 016413 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK 165 (390)
Q Consensus 127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~ 165 (390)
.++||+...|+|+. +-+| .|+.+.+|..
T Consensus 261 pD~KIlATAGWD~R------iRVy-----swrtl~pLAV 288 (323)
T KOG0322|consen 261 PDGKILATAGWDHR------IRVY-----SWRTLNPLAV 288 (323)
T ss_pred cCCcEEeecccCCc------EEEE-----EeccCCchhh
Confidence 48999999999974 5566 5777777655
No 149
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.60 E-value=1.8e+02 Score=25.94 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=28.7
Q ss_pred CCCCeEEC--CCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCc-cceeeccCC
Q 016413 322 DEMKWKVL--PPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDS-LVIIYHYRP 388 (390)
Q Consensus 322 ~~~~W~~~--~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~v~~~ 388 (390)
+..+|+.. .+.|.+.-+. +--..++-|=|-||.+ .+.++-... .+|.+|+..
T Consensus 243 e~e~wk~tll~~f~~~~w~v--SWS~sGn~LaVs~GdN-------------kvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRV--SWSLSGNILAVSGGDN-------------KVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred ccCcccccccccCCcceEEE--EEeccccEEEEecCCc-------------EEEEEEeCCCCcEEEcccc
Confidence 34577753 3444444332 3234566666666653 355555555 499988754
No 150
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.00 E-value=88 Score=27.75 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=46.1
Q ss_pred EEEEEeceeCCCCCCCCceEEEEECCCCCeEeCC----------------CCCCCCCCceEEEECCEEEEEccCCCCCCC
Q 016413 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP----------------PLPSPRYSPATQLWRGRLHVMGGSKENRHT 243 (390)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~----------------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 243 (390)
+=++.||.+. +-.+|.||-. +|..-. ....++..-+.+.-+++++|.--.
T Consensus 176 krlvSgGcDn------~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~------ 241 (299)
T KOG1332|consen 176 KRLVSGGCDN------LVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD------ 241 (299)
T ss_pred ceeeccCCcc------ceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec------
Confidence 4578888754 4556776653 664432 233556666666667776666211
Q ss_pred CCcceEEeeeeccccccCCeEE--ccCCCCCCCceeEEEECCEEEEEcCCC
Q 016413 244 PGLEHWSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQE 292 (390)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~W~~--~~~~p~~~~~~~~~~~~~~iyv~GG~~ 292 (390)
.+.+.|+. +.+.|......+--..++-|-|-||.+
T Consensus 242 --------------~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 242 --------------EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred --------------CccCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence 13456654 345555554434444555555566644
No 151
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=50.63 E-value=48 Score=30.94 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=54.3
Q ss_pred CCEEEEEecCC---CCCCCCCeEEEEeCCCCc--eee-cCCCCC---CCCCcceEEEEeCCEEEEEeceeCCCCCCCCce
Q 016413 128 KNLFYVFAGYG---SLDYVHSHVDVYNFTDNK--WVD-RFDMPK---DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSR 198 (390)
Q Consensus 128 ~~~lyv~GG~~---~~~~~~~~v~~yd~~~~~--W~~-~~~l~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 198 (390)
+..+|+..=+- .....++-|++||+.|-+ ++. +|+-|. -..+...++...+..+||.-= .+..+
T Consensus 47 gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-------TPa~S 119 (342)
T PF06433_consen 47 GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF-------TPATS 119 (342)
T ss_dssp SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE-------SSSEE
T ss_pred CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc-------CCCCe
Confidence 34577665331 111235779999999874 443 333211 112334444446677888742 46788
Q ss_pred EEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEcc
Q 016413 199 TFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG 236 (390)
Q Consensus 199 v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 236 (390)
|-+-|++.++--. .++.|-+.+..-.-++.++.+.|
T Consensus 120 VtVVDl~~~kvv~--ei~~PGC~~iyP~~~~~F~~lC~ 155 (342)
T PF06433_consen 120 VTVVDLAAKKVVG--EIDTPGCWLIYPSGNRGFSMLCG 155 (342)
T ss_dssp EEEEETTTTEEEE--EEEGTSEEEEEEEETTEEEEEET
T ss_pred EEEEECCCCceee--eecCCCEEEEEecCCCceEEEec
Confidence 9999999887633 33444444433344555555544
No 152
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=48.84 E-value=2.7e+02 Score=27.31 Aligned_cols=188 Identities=10% Similarity=0.099 Sum_probs=96.5
Q ss_pred CCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCc-eEEEEECCCCCeEeCCCCCCCCCCc
Q 016413 144 HSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTS-RTFVLDSETRKWDSIPPLPSPRYSP 222 (390)
Q Consensus 144 ~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~-~v~~yd~~~~~W~~~~~~p~~r~~~ 222 (390)
..+++.++.+..+=..++-...+ -...+...-++.|.|.--. . .+.. --+.|-...+- .+..+++.+-.
T Consensus 106 taDly~v~~e~Ge~kRiTyfGr~--fT~VaG~~~dg~iiV~TD~--~---tPF~q~~~lYkv~~dg-~~~e~LnlGpa-- 175 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFGRR--FTRVAGWIPDGEIIVSTDF--H---TPFSQWTELYKVNVDG-IKTEPLNLGPA-- 175 (668)
T ss_pred cccEEEEeCCCCcEEEEEEeccc--cceeeccCCCCCEEEEecc--C---CCcccceeeeEEccCC-ceeeeccCCce--
Confidence 36789998888887776555321 1222223356777776422 1 1222 22233222221 11123443322
Q ss_pred eEEEECCEEEEEccCCCC-------CCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCCC
Q 016413 223 ATQLWRGRLHVMGGSKEN-------RHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDF 295 (390)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~-------~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~ 295 (390)
+..+..+-+.|+|--..+ .--.....|.-. ....+++++-.|+..-. +-+.++++||.+--+++-.
T Consensus 176 thiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~-----d~g~tFeK~vdl~~~vS--~PmIV~~RvYFlsD~eG~G 248 (668)
T COG4946 176 THIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISS-----DGGKTFEKFVDLDGNVS--SPMIVGERVYFLSDHEGVG 248 (668)
T ss_pred eeEEEeCCEEEEccCcccCcccccccCCccceEEEEe-----cCCcceeeeeecCCCcC--CceEEcceEEEEecccCcc
Confidence 233444447777642211 111223444321 12335666666765543 4577899999998776643
Q ss_pred CCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEE
Q 016413 296 MAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQ 374 (390)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~ 374 (390)
.+|.-| ..+--+.-.....--.++ +-.+|+-+||-- .+ ++|.
T Consensus 249 --------------------nlYSvdldGkDlrrHTnFtdYY~R~----~nsDGkrIvFq~---~G----------dIyl 291 (668)
T COG4946 249 --------------------NLYSVDLDGKDLRRHTNFTDYYPRN----ANSDGKRIVFQN---AG----------DIYL 291 (668)
T ss_pred --------------------ceEEeccCCchhhhcCCchhccccc----cCCCCcEEEEec---CC----------cEEE
Confidence 366666 554434444443222222 334677666621 11 6999
Q ss_pred eecCccceeec
Q 016413 375 FHLDSLVIIYH 385 (390)
Q Consensus 375 yd~~~~~W~~v 385 (390)
|||++++-+++
T Consensus 292 ydP~td~lekl 302 (668)
T COG4946 292 YDPETDSLEKL 302 (668)
T ss_pred eCCCcCcceee
Confidence 99999887765
No 153
>PRK01742 tolB translocation protein TolB; Provisional
Probab=47.47 E-value=2.7e+02 Score=26.92 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=34.1
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCE-EEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRY-IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (390)
..++.+|+.+.+-+.+...+.. ....+ ..-+++ |++....++ ..+++.+|+.+...+.+..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~--~~~~~-wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGH--NGAPA-FSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCc--cCcee-ECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeecc
Confidence 4589999988776655544321 11222 223444 444332221 3468899998877766653
No 154
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=47.07 E-value=1.7e+02 Score=25.96 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=30.9
Q ss_pred EEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCC
Q 016413 317 VYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEK 359 (390)
Q Consensus 317 v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~ 359 (390)
+-.+| ..+.-++++-+...+-. ...+.+.++.+|.|-.+++
T Consensus 125 ~r~wDCRS~s~ePiQildea~D~--V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 125 VRLWDCRSRSFEPIQILDEAKDG--VSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred eEEEEcccCCCCccchhhhhcCc--eeEEEecccEEEeeccCCc
Confidence 88888 77787888877766654 3457888899888877655
No 155
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=46.67 E-value=2.7e+02 Score=26.71 Aligned_cols=143 Identities=11% Similarity=0.079 Sum_probs=75.1
Q ss_pred ceEEEE-eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEE-EECCEEEEEccCCCCCCCCCcce
Q 016413 171 HLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEH 248 (390)
Q Consensus 171 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~ 248 (390)
-+.++. .+|.+...||.+.... ++|+.+.+-...=.- .-+.-+++. .-+|....-||. ++.+.+
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~R--------vWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~-----Dnt~kV 371 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGR--------VWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSS-----DNTCKV 371 (459)
T ss_pred cceeEecCCCceeeccCccchhh--------eeecccCcEEEEecc-cccceeeEeECCCceEEeecCC-----CCcEEE
Confidence 344444 5889999999876432 355555543332110 111112222 226666666665 356788
Q ss_pred EEeeeeccccccCCeEEccCCCCCCCceeEE---EECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCCCCC
Q 016413 249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACF---VFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMK 325 (390)
Q Consensus 249 ~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~---~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 325 (390)
||+. .... +-.+|.-..--+-+ .-.|..++.++++.. +-++ .+..
T Consensus 372 WDLR------~r~~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t----------------------~kiW-s~~~ 419 (459)
T KOG0272|consen 372 WDLR------MRSE---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT----------------------VKIW-STRT 419 (459)
T ss_pred eeec------cccc---ceecccccchhhheEecccCCeEEEEcccCcc----------------------eeee-cCCC
Confidence 8873 1111 22233211111111 135678888887653 5566 5668
Q ss_pred eEECCCCCCCCCcceeEEEEECCEEEEEcCCCCC
Q 016413 326 WKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEK 359 (390)
Q Consensus 326 W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~ 359 (390)
|..+..|.-.-...-..-...+++.++.++++..
T Consensus 420 ~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 420 WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred cccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence 8888777644333322224456777777777654
No 156
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=46.12 E-value=2.6e+02 Score=26.32 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCC
Q 016413 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD 294 (390)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~ 294 (390)
++.+.+-||-+ +....|++ .+..|--.-+--...-......+++.++..|+..+.
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~-------~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~ 129 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDI-------STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGK 129 (399)
T ss_pred CCceEEecCCC-----ceEEEEEc-------cCCcceeEecCCCCceEEEEEccCceEEEecCCCcc
Confidence 67788888864 45667774 444443222111222223445678889999998765
No 157
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=43.84 E-value=2.8e+02 Score=26.01 Aligned_cols=82 Identities=22% Similarity=0.279 Sum_probs=49.3
Q ss_pred ceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCce
Q 016413 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276 (390)
Q Consensus 197 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 276 (390)
..+-.++..+. +.+..+...+.+-+.+.+++++.|.|.. ++....|++ +...--.+-.=-... -
T Consensus 340 RTikvW~~st~--efvRtl~gHkRGIAClQYr~rlvVSGSS-----DntIRlwdi-------~~G~cLRvLeGHEeL--v 403 (499)
T KOG0281|consen 340 RTIKVWSTSTC--EFVRTLNGHKRGIACLQYRDRLVVSGSS-----DNTIRLWDI-------ECGACLRVLEGHEEL--V 403 (499)
T ss_pred ceEEEEeccce--eeehhhhcccccceehhccCeEEEecCC-----CceEEEEec-------cccHHHHHHhchHHh--h
Confidence 34555665543 3344555566777888999999998865 356777875 222221111000000 1
Q ss_pred eEEEECCEEEEEcCCCCC
Q 016413 277 ACFVFNDRLFVVGGQEGD 294 (390)
Q Consensus 277 ~~~~~~~~iyv~GG~~~~ 294 (390)
-++-++++=+|-||+++.
T Consensus 404 RciRFd~krIVSGaYDGk 421 (499)
T KOG0281|consen 404 RCIRFDNKRIVSGAYDGK 421 (499)
T ss_pred hheeecCceeeeccccce
Confidence 467788998999999875
No 158
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=42.91 E-value=2.4e+02 Score=24.99 Aligned_cols=199 Identities=17% Similarity=0.227 Sum_probs=89.0
Q ss_pred CCCceeecCCCCCC---CCC-cceEEEE-eCCEEEEEeceeCCCC-CCCCceEEEEECC-CCCeEeCCCCCCC------C
Q 016413 153 TDNKWVDRFDMPKD---MAH-SHLGVVS-DGRYIYIVSGQYGPQC-RGPTSRTFVLDSE-TRKWDSIPPLPSP------R 219 (390)
Q Consensus 153 ~~~~W~~~~~l~~~---~~r-~~~~~~~-~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~-~~~W~~~~~~p~~------r 219 (390)
...+|+....+..+ ..+ ....++. .+++|+++-....... .......+..... ..+|+....++.. .
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 45689874332221 112 2333333 3889999863221111 0111212244443 5689887543211 1
Q ss_pred CCce--EEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCC-CC-ceeEEE-ECCEEEEEcCCCCC
Q 016413 220 YSPA--TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG-GP-HRACFV-FNDRLFVVGGQEGD 294 (390)
Q Consensus 220 ~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~-~~-~~~~~~-~~~~iyv~GG~~~~ 294 (390)
.... +..-++++++.. ... ....+...++--+....+|+.....+.. .. ..+.+. -+++|+++--....
T Consensus 108 ~~~~~~i~~~~G~l~~~~-~~~-----~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~ 181 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPY-YHE-----SGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGN 181 (275)
T ss_dssp CSEEEEEEECTTEEEEEE-EEE-----SSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSS
T ss_pred cceeeeeEecCCCEEEEE-eec-----cccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCC
Confidence 1122 334478888872 111 1111222221112366789888665422 22 223333 36788877543211
Q ss_pred CCCCCCCCccccccccceecCcEEee-C--CCCCeEECC--CCCCCCCcceeEEEE-ECCEEEEEcCCCCCCCcceeeEE
Q 016413 295 FMAKPGSPIFKCSRRHEVVYGDVYML-D--DEMKWKVLP--PMPKPNSHIECAWVI-VNNSIIITGGTTEKHPMTKRMIL 368 (390)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~y-d--~~~~W~~~~--~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~ 368 (390)
..++.+ . ...+|+... .+|.+.. ...++. -+++++++....... .
T Consensus 182 --------------------~~~~~~~S~D~G~TWs~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~r-------~ 232 (275)
T PF13088_consen 182 --------------------DDIYISRSTDGGRTWSPPQPTNLPNPNS--SISLVRLSDGRLLLVYNNPDGR-------S 232 (275)
T ss_dssp --------------------TEEEEEEESSTTSS-EEEEEEECSSCCE--EEEEEECTTSEEEEEEECSSTS-------E
T ss_pred --------------------CcEEEEEECCCCCcCCCceecccCcccC--CceEEEcCCCCEEEEEECCCCC-------C
Confidence 013332 2 345999865 4444433 233233 367888887722111 1
Q ss_pred eeeEEEeecCccceeecc
Q 016413 369 VGEVFQFHLDSLVIIYHY 386 (390)
Q Consensus 369 ~~~v~~yd~~~~~W~~v~ 386 (390)
.-.++.-..+..+|....
T Consensus 233 ~l~l~~S~D~g~tW~~~~ 250 (275)
T PF13088_consen 233 NLSLYVSEDGGKTWSRPK 250 (275)
T ss_dssp EEEEEEECTTCEEEEEEE
T ss_pred ceEEEEEeCCCCcCCccE
Confidence 123444344478887654
No 159
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.72 E-value=2.8e+02 Score=25.62 Aligned_cols=20 Identities=5% Similarity=0.238 Sum_probs=16.4
Q ss_pred eEEEeecCccceeeccCCCC
Q 016413 371 EVFQFHLDSLVIIYHYRPPK 390 (390)
Q Consensus 371 ~v~~yd~~~~~W~~v~~~P~ 390 (390)
-||.|+-..++|.++..+|.
T Consensus 202 ~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 202 KIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred EEEEecCCcceeeeehhcCC
Confidence 47777888889999999873
No 160
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.34 E-value=1.1e+02 Score=28.11 Aligned_cols=93 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEE
Q 016413 268 PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV 346 (390)
Q Consensus 268 ~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~ 346 (390)
++|...+...+-..+.++.+|+=.-+.+ .+++| .+.+=...-.-+..|.+.++++..-
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG~~---------------------~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~ 60 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPGTF---------------------ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP 60 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCCcE---------------------EEEEEcCCCceeeEEcCCCCCEEecCEEEcC
Q ss_pred CCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccCCC
Q 016413 347 NNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYRPP 389 (390)
Q Consensus 347 ~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~P 389 (390)
+|+++..--.+-...+.. |-+||.. +...+++.+|
T Consensus 61 dG~~LytTEnd~~~g~G~-------IgVyd~~-~~~~ri~E~~ 95 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGV-------IGVYDAA-RGYRRIGEFP 95 (305)
T ss_pred CCCEEEEeccccCCCcEE-------EEEEECc-CCcEEEeEec
No 161
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=42.09 E-value=1.7e+02 Score=26.67 Aligned_cols=129 Identities=15% Similarity=0.194 Sum_probs=70.2
Q ss_pred CceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEE-EECCEEEE
Q 016413 155 NKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHV 233 (390)
Q Consensus 155 ~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv 233 (390)
|.|..+. +|...+-..-+.+..+.+.+++|+. ..+..-|-..++|++.-. +..|..+..+ .++.+=++
T Consensus 32 ~p~~~ve-lp~~s~~l~ia~~~~g~~gwlVg~r---------gtiletdd~g~tw~qal~-~~gr~~f~sv~f~~~egw~ 100 (339)
T COG4447 32 NPWTDVE-LPTLSPTLDIAFTESGSHGWLVGGR---------GTILETDDGGITWAQALD-FLGRHAFHSVSFLGMEGWI 100 (339)
T ss_pred Ccceeee-ccccCcccceeEeecCcceEEEcCc---------ceEEEecCCcccchhhhc-hhhhhheeeeeeecccccc
Confidence 4565542 3332234455666678899999983 345555667788987643 3335544444 44555555
Q ss_pred EccCCCCCCCCCcceEEeeeeccccccCCeEEcc-CCCCCCCceeEEEECCE-EEEEcCCCCCCCCCCCCCccccccccc
Q 016413 234 MGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI-PIPRGGPHRACFVFNDR-LFVVGGQEGDFMAKPGSPIFKCSRRHE 311 (390)
Q Consensus 234 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~ 311 (390)
.|=- ...+... ....+|.+++ +...+.+-.+...++++ -+++|-+.
T Consensus 101 vGe~--------sqll~T~-----DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~G------------------- 148 (339)
T COG4447 101 VGEP--------SQLLHTT-----DGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQG------------------- 148 (339)
T ss_pred cCCc--------ceEEEec-----CCCcchhhchhhcCCCCCcceeEEecchhhhhhcccc-------------------
Confidence 5421 1222211 3677898875 33334433456555554 34444321
Q ss_pred eecCcEEeeC-CCCCeEECC
Q 016413 312 VVYGDVYMLD-DEMKWKVLP 330 (390)
Q Consensus 312 ~~~~~v~~yd-~~~~W~~~~ 330 (390)
.|+.-+ -.+.|+.+-
T Consensus 149 ----ail~T~DgGk~Wk~l~ 164 (339)
T COG4447 149 ----AILKTTDGGKNWKALV 164 (339)
T ss_pred ----eEEEecCCcccHhHhc
Confidence 266555 567998764
No 162
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=40.68 E-value=78 Score=18.72 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=16.7
Q ss_pred eEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCC
Q 016413 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (390)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (390)
.+.++.++.+|+.+. ...++++|+++
T Consensus 15 ~~~~v~~g~vyv~~~---------dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG---------DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T---------TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC---------CCEEEEEeCCC
Confidence 344778899988864 45688888764
No 163
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=39.94 E-value=3.1e+02 Score=25.36 Aligned_cols=182 Identities=13% Similarity=0.058 Sum_probs=83.6
Q ss_pred EEEEeCCCC-ceeecCCCCC--CCCCcceEEEEeCCEEEEEece---eCCCCCCCCceEEEEECCCCCeEeCCCCCCCCC
Q 016413 147 VDVYNFTDN-KWVDRFDMPK--DMAHSHLGVVSDGRYIYIVSGQ---YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY 220 (390)
Q Consensus 147 v~~yd~~~~-~W~~~~~l~~--~~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 220 (390)
+..+++++. .|+.+..... +..|.+=..+.-+|.+|+---. .+.........++++||. ...+++..-.....
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~ 165 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIP 165 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEec
Confidence 555665433 3355433221 2246676777777877774322 111212446689999984 44544432111111
Q ss_pred CceEE-EECCEEEEEccCCCCCCCCCcceEEeeeeccccccC-CeEEccCCCCCCCceeEEEECCEEEEEcCCCCCCCCC
Q 016413 221 SPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK-AWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAK 298 (390)
Q Consensus 221 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 298 (390)
..-+. .-+..+|+.-- ....+.+|++...+..+... .+... .....+.--.++--++.||+.....+.
T Consensus 166 NGla~SpDg~tly~aDT-----~~~~i~r~~~d~~~g~~~~~~~~~~~-~~~~G~PDG~~vDadG~lw~~a~~~g~---- 235 (307)
T COG3386 166 NGLAFSPDGKTLYVADT-----PANRIHRYDLDPATGPIGGRRGFVDF-DEEPGLPDGMAVDADGNLWVAAVWGGG---- 235 (307)
T ss_pred CceEECCCCCEEEEEeC-----CCCeEEEEecCcccCccCCcceEEEc-cCCCCCCCceEEeCCCCEEEecccCCc----
Confidence 11222 22336676621 12333444332111111111 11111 122233333566678889976555432
Q ss_pred CCCCccccccccceecCcEEeeCCCCCeEECCCCCCCCCcceeEEEEEC---CEEEEEcCCCCC
Q 016413 299 PGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVN---NSIIITGGTTEK 359 (390)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~~~~~~~~~~~~~---~~l~v~GG~~~~ 359 (390)
.|.+|++..+-...-.+|.++... ++..+ +.|||..-..+.
T Consensus 236 -----------------~v~~~~pdG~l~~~i~lP~~~~t~---~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 236 -----------------RVVRFNPDGKLLGEIKLPVKRPTN---PAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred -----------------eEEEECCCCcEEEEEECCCCCCcc---ceEeCCCcCEEEEEecCCCC
Confidence 388998653322222455433321 12333 689998766544
No 164
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=39.28 E-value=2.3e+02 Score=26.05 Aligned_cols=53 Identities=4% Similarity=-0.056 Sum_probs=31.2
Q ss_pred EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeC
Q 016413 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG 189 (390)
Q Consensus 130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~ 189 (390)
.....||.+. ++-.+|+.+++=.+++.-..|. |..+-+-..+-.+.+.|.++.
T Consensus 85 skVf~g~~Dk------~~k~wDL~S~Q~~~v~~Hd~pv-kt~~wv~~~~~~cl~TGSWDK 137 (347)
T KOG0647|consen 85 SKVFSGGCDK------QAKLWDLASGQVSQVAAHDAPV-KTCHWVPGMNYQCLVTGSWDK 137 (347)
T ss_pred ceEEeeccCC------ceEEEEccCCCeeeeeecccce-eEEEEecCCCcceeEeccccc
Confidence 3334456553 4788999999887776555543 444433333344666665543
No 165
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=38.76 E-value=3.1e+02 Score=25.03 Aligned_cols=259 Identities=12% Similarity=0.085 Sum_probs=117.3
Q ss_pred hccEEEEecCCCCCCCccccceeeeeccCCCceEeecCCCCCccccccceEEEecCCCchhHHHhhhcccccccCCCCeE
Q 016413 31 IADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWE 110 (390)
Q Consensus 31 ~~~~l~~~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 110 (390)
-.++.|++|+.. ++..-|-..+.|.+....... ..-+++.+++..+-...+ -+ .++.-+-..++|.
T Consensus 53 ~g~~gwlVg~rg---------tiletdd~g~tw~qal~~~gr---~~f~sv~f~~~egw~vGe-~s-qll~T~DgGqsWA 118 (339)
T COG4447 53 SGSHGWLVGGRG---------TILETDDGGITWAQALDFLGR---HAFHSVSFLGMEGWIVGE-PS-QLLHTTDGGQSWA 118 (339)
T ss_pred cCcceEEEcCcc---------eEEEecCCcccchhhhchhhh---hheeeeeeecccccccCC-cc-eEEEecCCCcchh
Confidence 356778888771 233334466788776553221 233445555554332222 11 3444455567898
Q ss_pred ECCCCCC-cCCCceEEEECC-EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEecee
Q 016413 111 QMPSAPV-PRLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188 (390)
Q Consensus 111 ~~~~~~~-~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~ 188 (390)
+++.-.. +-.-.+...+++ .-+++|-+. .+..=+--.+.|+.+.+-..+.........+.++...++|-.
T Consensus 119 Ri~~~e~~eg~~~sI~f~d~q~g~m~gd~G-------ail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~r- 190 (339)
T COG4447 119 RIPLSEKLEGFPDSITFLDDQRGEMLGDQG-------AILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGAR- 190 (339)
T ss_pred hchhhcCCCCCcceeEEecchhhhhhcccc-------eEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecC-
Confidence 8754221 112233344443 344544322 233334456789877554333111122223344545555521
Q ss_pred CCCCCCCCceEE-EEECCCCCeEeCCCCCCCCCCceEE-EECC--EEEEEccCCCCCCCCCcceEEeeeeccccccCCeE
Q 016413 189 GPQCRGPTSRTF-VLDSETRKWDSIPPLPSPRYSPATQ-LWRG--RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR 264 (390)
Q Consensus 189 ~~~~~~~~~~v~-~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 264 (390)
+ .++ -.+.....|..-.+-.. |..-++. ...+ -+++.||.... ..|. +..+.|+
T Consensus 191 G--------s~f~T~~aGqt~~~~~g~~s~-~~letmg~adag~~g~la~g~qg~~------f~~~-------~~gD~ws 248 (339)
T COG4447 191 G--------SFFSTWGAGQTVWLPHGRNSS-RRLETMGLADAGSKGLLARGGQGDQ------FSWV-------CGGDEWS 248 (339)
T ss_pred c--------ceEecCCCCccEEeccCCCcc-chhcccccccCCccceEEEccccce------eecC-------CCccccc
Confidence 1 111 12233332332221111 2111222 2233 46777765311 1111 3567777
Q ss_pred EccC-CCCCCCce----eEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeCCCCCeEECCCCCCCCCcc
Q 016413 265 TEIP-IPRGGPHR----ACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHI 339 (390)
Q Consensus 265 ~~~~-~p~~~~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~~~~~ 339 (390)
..+. ....|... .+-...+++||.|+.. + -+..-|-..+|++....+.....+
T Consensus 249 d~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~gG-n---------------------vl~StdgG~t~skd~g~~er~s~l 306 (339)
T COG4447 249 DQGEPVNLGRRSWGLLDFAPRAPPEVWVSGIGG-N---------------------VLASTDGGTTWSKDGGVEERVSNL 306 (339)
T ss_pred ccccchhcccCCCccccccccCCCCeEEeccCc-c---------------------EEEecCCCeeEeccCChhhhhhhh
Confidence 6532 11221111 2345578899988732 1 122333566999766555433322
Q ss_pred eeEEEEECCEEEEEcC
Q 016413 340 ECAWVIVNNSIIITGG 355 (390)
Q Consensus 340 ~~~~~~~~~~l~v~GG 355 (390)
.-.....+++.+++|-
T Consensus 307 ~~V~~ts~~~~~l~Gq 322 (339)
T COG4447 307 YSVVFTSPKAGFLCGQ 322 (339)
T ss_pred heEEeccCCceEEEcC
Confidence 2223455778888874
No 166
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=36.76 E-value=5.4e+02 Score=27.30 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=21.8
Q ss_pred ceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCC--ceeecCC
Q 016413 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFD 162 (390)
Q Consensus 122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~ 162 (390)
.+-+++++.||+.... +.+..+|..|. .|+.-..
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCC
Confidence 4457789999997432 34777777654 3665433
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=36.72 E-value=4.3e+02 Score=26.14 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=18.9
Q ss_pred CeEEccCCCCCCCceeEEEECCEEEEEcCCCC
Q 016413 262 AWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG 293 (390)
Q Consensus 262 ~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~ 293 (390)
.|.+.-.-|.... +....+..|++-=|++.
T Consensus 202 ~~~~~HsAP~~gi--cfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 202 HASEAHSAPCRGI--CFSPSNEALLVSVGYDK 231 (673)
T ss_pred chhhhccCCcCcc--eecCCccceEEEecccc
Confidence 3555544454433 45667888888888864
No 168
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=35.91 E-value=3.8e+02 Score=25.31 Aligned_cols=58 Identities=10% Similarity=0.037 Sum_probs=33.2
Q ss_pred hcccccccCCCCeE-ECCCCCCcCCC-----ceE-EEECC-EEEEEecCCCCCCCCCeEEEEeCCCCceee
Q 016413 97 ATFADLPAPDLEWE-QMPSAPVPRLD-----GAA-IQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVD 159 (390)
Q Consensus 97 ~~~~~~~~~~~~W~-~~~~~~~~R~~-----~~~-~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 159 (390)
..+..+|..+.+=. +++..+.||.. ... ..-++ .|||. - ..+.+.|-+.|..+++-..
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~-n----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY-Q----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEe-c----CCCCCEEEEEECCCCcEEE
Confidence 47888898887543 33333455522 122 22244 57775 2 2224679999999887544
No 169
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=35.87 E-value=5.4e+02 Score=26.98 Aligned_cols=219 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhcccccccCCCCeEECCCCCCcCCCceEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE
Q 016413 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (390)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~ 175 (390)
+..+..|..+.-.-...-++...+-.-.+...-+.-+.||+.. +..+-+|+-.+++......-.. .|......
T Consensus 286 sG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k-----lgQLlVweWqsEsYVlKQQgH~--~~i~~l~Y 358 (893)
T KOG0291|consen 286 SGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK-----LGQLLVWEWQSESYVLKQQGHS--DRITSLAY 358 (893)
T ss_pred CCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc-----cceEEEEEeeccceeeeccccc--cceeeEEE
Q ss_pred EeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeec
Q 016413 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD 255 (390)
Q Consensus 176 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 255 (390)
.-+|.+.+.|+.++. |-+||.......---.-+..-...-.....++..+.--.++ .+..||+
T Consensus 359 SpDgq~iaTG~eDgK--------VKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG-----tVRAwDl---- 421 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGK--------VKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAWDL---- 421 (893)
T ss_pred CCCCcEEEeccCCCc--------EEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC-----eEEeeee----
Q ss_pred cccccCCeEEccCCCCCCCceeEEEEC--CEEEEEcCCCCCCCCCCCCCccccccccceecCcEEeeC-CCCCeEECCCC
Q 016413 256 GKALEKAWRTEIPIPRGGPHRACFVFN--DRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPM 332 (390)
Q Consensus 256 ~~~~~~~W~~~~~~p~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~ 332 (390)
..-...+......+..+ ++++.+ |.|.+.|+.+.-. |++.+ .+.+--.+-.=
T Consensus 422 --kRYrNfRTft~P~p~Qf--scvavD~sGelV~AG~~d~F~---------------------IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 422 --KRYRNFRTFTSPEPIQF--SCVAVDPSGELVCAGAQDSFE---------------------IFVWSVQTGQLLDILSG 476 (893)
T ss_pred --cccceeeeecCCCceee--eEEEEcCCCCEEEeeccceEE---------------------EEEEEeecCeeeehhcC
Q ss_pred CCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeec
Q 016413 333 PKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHL 377 (390)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~ 377 (390)
+...-..-+ ....+.+++-|-++.+ |-++|+
T Consensus 477 HEgPVs~l~--f~~~~~~LaS~SWDkT------------VRiW~i 507 (893)
T KOG0291|consen 477 HEGPVSGLS--FSPDGSLLASGSWDKT------------VRIWDI 507 (893)
T ss_pred CCCcceeeE--EccccCeEEeccccce------------EEEEEe
No 170
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=35.87 E-value=2.7e+02 Score=23.62 Aligned_cols=88 Identities=9% Similarity=0.037 Sum_probs=50.2
Q ss_pred cCCCCCCCCCeEEEEeCCCCceeec--CCCC-CCCCCcceEEEEeCCEEEE-EeceeCCCCCCCCceEEEEECCCCCeEe
Q 016413 136 GYGSLDYVHSHVDVYNFTDNKWVDR--FDMP-KDMAHSHLGVVSDGRYIYI-VSGQYGPQCRGPTSRTFVLDSETRKWDS 211 (390)
Q Consensus 136 G~~~~~~~~~~v~~yd~~~~~W~~~--~~l~-~~~~r~~~~~~~~~~~iyv-~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 211 (390)
|-++...-.-+++++|..++.|..+ .+-+ .-.|. ......+..|.| +|-..+.- ..-..+++|++.+..=+.
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTv--S~GGnLy~~nl~tg~~~~ 154 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTV--SKGGNLYKYNLNTGNLTE 154 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceE--ccCCeEEEEEccCCceeE
Confidence 3344334457899999999888655 2222 11122 334445555544 55322221 234679999999998888
Q ss_pred CCCCCCCCCCceEEEE
Q 016413 212 IPPLPSPRYSPATQLW 227 (390)
Q Consensus 212 ~~~~p~~r~~~~~~~~ 227 (390)
+-+...-+.....+..
T Consensus 155 ly~~~dkkqQVis~e~ 170 (200)
T PF15525_consen 155 LYEWKDKKQQVISAEK 170 (200)
T ss_pred eeeccccceeEEEEEE
Confidence 8776554433333333
No 171
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.04 E-value=3.4e+02 Score=25.09 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=53.6
Q ss_pred ccCCCCeEECCCCCCcCCCceEEEE----CCEEEEEecCCCCCCCCCeEEEEeC-CCCceeec---CCCCCCCCC--cce
Q 016413 103 PAPDLEWEQMPSAPVPRLDGAAIQI----KNLFYVFAGYGSLDYVHSHVDVYNF-TDNKWVDR---FDMPKDMAH--SHL 172 (390)
Q Consensus 103 ~~~~~~W~~~~~~~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~-~~~~W~~~---~~l~~~~~r--~~~ 172 (390)
+....+|.+...|...|..-.-+.+ -+-..+.-+.++ .+.--|..|| ...+|+.. ..++.|.++ ..+
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG---~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~ 172 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG---ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC 172 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc---EEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence 4445689888887777754333222 122333333333 1121222233 23578754 333343332 223
Q ss_pred EEEEe-----CCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCC
Q 016413 173 GVVSD-----GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (390)
Q Consensus 173 ~~~~~-----~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 215 (390)
.++.. ...++++|-...... .....++.|+-..++|.+++.+
T Consensus 173 ~CvsWn~sr~~~p~iAvgs~e~a~~-~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 173 FCVSWNPSRMHEPLIAVGSDEDAPH-LNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred eEEeeccccccCceEEEEcccCCcc-ccceEEEEecCCcceeeeehhc
Confidence 33332 345777765442221 2234566777777899998643
No 172
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=34.75 E-value=2.4e+02 Score=28.35 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=34.8
Q ss_pred CEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceEEe
Q 016413 179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
-.||+.|- -++|+++|++..+|-. |+...-..--++.+ .+.|+.+||.. ..++.||.
T Consensus 146 cDly~~gs---------g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~-----g~VEfwDp 204 (703)
T KOG2321|consen 146 CDLYLVGS---------GSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTED-----GVVEFWDP 204 (703)
T ss_pred ccEEEeec---------CcceEEEEcccccccc--ccccccccceeeeecCccceEEecccC-----ceEEEecc
Confidence 34777763 4789999999998844 32221122222333 45688888864 46777773
No 173
>PRK04043 tolB translocation protein TolB; Provisional
Probab=34.45 E-value=4.4e+02 Score=25.54 Aligned_cols=193 Identities=9% Similarity=0.010 Sum_probs=93.0
Q ss_pred CeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCCceE
Q 016413 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224 (390)
Q Consensus 145 ~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 224 (390)
.+++++|+.+.+=+.+...+. ..........+.+|.+.-...+ ..+++.+|..+..++++.+.+..-.....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~ 284 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG--MLVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKTLTQITNYPGIDVNGNF 284 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC--cEEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCcEEEcccCCCccCccEE
Confidence 379999998887666654322 1112222223445655443211 46899999999999988755431111222
Q ss_pred EEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCceeEEEECCE-EEEEcCCCCCCCCCCCCCc
Q 016413 225 QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDR-LFVVGGQEGDFMAKPGSPI 303 (390)
Q Consensus 225 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~ 303 (390)
..-+.+|+......+ ...+...+ ..+.+.+++..... .. ....-+++ |..........
T Consensus 285 SPDG~~I~F~Sdr~g---~~~Iy~~d-------l~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~-------- 343 (419)
T PRK04043 285 VEDDKRIVFVSDRLG---YPNIFMKK-------LNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNE-------- 343 (419)
T ss_pred CCCCCEEEEEECCCC---CceEEEEE-------CCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcc--------
Confidence 233446666643321 12223333 34555544432111 11 12333444 43333221110
Q ss_pred cccccccceecCcEEeeC-CCCCeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCccce
Q 016413 304 FKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVI 382 (390)
Q Consensus 304 ~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 382 (390)
......+++.+| .+..++.+..-. ... ..+ ..-+|+.+++-...+.. ..++.+++..+.=
T Consensus 344 ------~~~~~~~I~v~d~~~g~~~~LT~~~--~~~-~p~-~SPDG~~I~f~~~~~~~---------~~L~~~~l~g~~~ 404 (419)
T PRK04043 344 ------FGKNTFNLYLISTNSDYIRRLTANG--VNQ-FPR-FSSDGGSIMFIKYLGNQ---------SALGIIRLNYNKS 404 (419)
T ss_pred ------cCCCCcEEEEEECCCCCeEECCCCC--CcC-CeE-ECCCCCEEEEEEccCCc---------EEEEEEecCCCee
Confidence 000123699999 777888886532 111 122 33456544444332221 2577888776543
Q ss_pred eec
Q 016413 383 IYH 385 (390)
Q Consensus 383 ~~v 385 (390)
..+
T Consensus 405 ~~l 407 (419)
T PRK04043 405 FLF 407 (419)
T ss_pred EEe
Confidence 333
No 174
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.25 E-value=1.2e+02 Score=27.82 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=29.9
Q ss_pred CeEECCCCCCCCCcceeEEEEECCEEEEEcCCCCCCCcceeeEEeeeEEEeecCcc
Q 016413 325 KWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSL 380 (390)
Q Consensus 325 ~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 380 (390)
+|+..+....+-...+.+++.+++...+-||.++. |.+||..++
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDet------------I~IYDm~k~ 73 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVSGPYVASGSSDET------------IHIYDMRKR 73 (362)
T ss_pred ceeeeccccccccccceeEEEecceeEeccCCCCc------------EEEEeccch
Confidence 77777766555444456678888887777776644 778886554
No 175
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=32.54 E-value=4.5e+02 Score=25.61 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=14.3
Q ss_pred eEEEECCEEEEEcCCCCC
Q 016413 277 ACFVFNDRLFVVGGQEGD 294 (390)
Q Consensus 277 ~~~~~~~~iyv~GG~~~~ 294 (390)
-++..++.+++.|+.++.
T Consensus 283 Lais~DgtlLlSGd~dg~ 300 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGK 300 (476)
T ss_pred EEEecCccEEEeeCCCCC
Confidence 345678999999998865
No 176
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=32.38 E-value=6.2e+02 Score=26.66 Aligned_cols=104 Identities=13% Similarity=0.230 Sum_probs=50.6
Q ss_pred EEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC----CCCCcceEEEEeCCEEEEEe------ceeCCCCCC
Q 016413 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK----DMAHSHLGVVSDGRYIYIVS------GQYGPQCRG 194 (390)
Q Consensus 125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~----~~~r~~~~~~~~~~~iyv~G------G~~~~~~~~ 194 (390)
+..++-||+|=-+ .+-+-+=+-..++|.....+.. |+.|.. +=-....-|++| |...... .
T Consensus 193 ~~~d~vLYlFERf------Q~~aKVSNDkGQtW~yyka~N~RvG~Pvsrtv--~yQs~tttYvLGYD~ifyGr~s~Di-r 263 (1030)
T PHA02579 193 MESDGVLYLFERF------QPMAKVSNDKGQTWKYYKAFNDRVGNPVSRTV--YYQSNTTTYVLGYDRIFYGRKSTDI-R 263 (1030)
T ss_pred eeeCCEEEehhhh------ccceeeecCCCcceeeehhhccccCCcchheE--EEecCceEEEeccceeEeccccccc-c
Confidence 4456777776332 2334444667888987755433 333322 111244456555 3322211 1
Q ss_pred CCceEEEEECCCCCeEeC----------------CCCC--CCCCCceEEEECCEEEEEccC
Q 016413 195 PTSRTFVLDSETRKWDSI----------------PPLP--SPRYSPATQLWRGRLHVMGGS 237 (390)
Q Consensus 195 ~~~~v~~yd~~~~~W~~~----------------~~~p--~~r~~~~~~~~~~~iyv~GG~ 237 (390)
...+=.+|...+-+..++ +.+| ..|..-+++.-++-|||..+-
T Consensus 264 wSaDdvrfSsddiTFaKlg~~l~lgFdve~F~~ya~LP~~v~~~aEA~a~sdd~iyvaa~d 324 (1030)
T PHA02579 264 WSADDVRFSSDDITFAKLGDDLGLGFDVEIFGTYARLPGDVSRKAEAMACSDDWIYVAARD 324 (1030)
T ss_pred cccccceecccceEEEeeccccCCCceeeeecchhhCCcchhhhhhheeccCcEEEEEecc
Confidence 112222333222223332 2344 345556677778889999764
No 177
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.25 E-value=3.8e+02 Score=24.20 Aligned_cols=95 Identities=19% Similarity=0.271 Sum_probs=48.9
Q ss_pred eCCEEEEEeceeCCCCCCCCceEEEEECCCC--CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeee
Q 016413 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (390)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (390)
-+.+-|++-|.. ...+-.-|+++. .|+.+-. .|...++.+++|. .|+|-+++. ++..++
T Consensus 20 ~dskT~v~igSH-------s~~~~avd~~sG~~~We~ilg---~RiE~sa~vvgdf-VV~GCy~g~-----lYfl~~--- 80 (354)
T KOG4649|consen 20 NDSKTLVVIGSH-------SGIVIAVDPQSGNLIWEAILG---VRIECSAIVVGDF-VVLGCYSGG-----LYFLCV--- 80 (354)
T ss_pred cCCceEEEEecC-------CceEEEecCCCCcEEeehhhC---ceeeeeeEEECCE-EEEEEccCc-----EEEEEe---
Confidence 344555554422 344666777765 4887643 4666667777776 666655432 222221
Q ss_pred ccccccCCeEEccCCCCCCCceeEEEECCEEEEEcCCCCC
Q 016413 255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD 294 (390)
Q Consensus 255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~ 294 (390)
+..+.-|.-+.--.-. . .+.+..++.++-+|.+++.
T Consensus 81 --~tGs~~w~f~~~~~vk-~-~a~~d~~~glIycgshd~~ 116 (354)
T KOG4649|consen 81 --KTGSQIWNFVILETVK-V-RAQCDFDGGLIYCGSHDGN 116 (354)
T ss_pred --cchhheeeeeehhhhc-c-ceEEcCCCceEEEecCCCc
Confidence 1334456544221111 1 1344555666667777654
No 178
>PTZ00420 coronin; Provisional
Probab=31.19 E-value=5.8e+02 Score=25.97 Aligned_cols=25 Identities=4% Similarity=0.381 Sum_probs=15.3
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCC
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTD 154 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~ 154 (390)
++..++.+|.+... ...+..||+..
T Consensus 225 d~~~IlTtG~d~~~--~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSKNN--MREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCCCC--ccEEEEEECCC
Confidence 44566666766432 23588888774
No 179
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=31.07 E-value=6.7e+02 Score=26.64 Aligned_cols=15 Identities=7% Similarity=-0.139 Sum_probs=11.2
Q ss_pred ceEEEECCEEEEEcc
Q 016413 222 PATQLWRGRLHVMGG 236 (390)
Q Consensus 222 ~~~~~~~~~iyv~GG 236 (390)
.+-+++++.||+...
T Consensus 188 ~TPlvvgg~lYv~t~ 202 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP 202 (764)
T ss_pred cCCEEECCEEEEECC
Confidence 344678999999854
No 180
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=30.98 E-value=5.1e+02 Score=25.24 Aligned_cols=131 Identities=17% Similarity=0.226 Sum_probs=67.0
Q ss_pred EEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcc-eEEEEe--CCEEEEEeceeCCCCCCCCceEEE
Q 016413 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSH-LGVVSD--GRYIYIVSGQYGPQCRGPTSRTFV 201 (390)
Q Consensus 125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~ 201 (390)
+..+++.+++||.+. .+.++|+.+-+ .+..++. .|.. .+++.- -+.+|..+- -..+-+
T Consensus 210 vS~Dgkylatgg~d~------~v~Iw~~~t~e--hv~~~~g--hr~~V~~L~fr~gt~~lys~s~---------Drsvkv 270 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDR------HVQIWDCDTLE--HVKVFKG--HRGAVSSLAFRKGTSELYSASA---------DRSVKV 270 (479)
T ss_pred EcCCCcEEEecCCCc------eEEEecCcccc--hhhcccc--cccceeeeeeecCccceeeeec---------CCceEE
Confidence 445899999999873 46677766543 2222222 2222 122222 234555431 122334
Q ss_pred EECCCCCeEeCCCCCCCCCCceEE------EECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCCc
Q 016413 202 LDSETRKWDSIPPLPSPRYSPATQ------LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPH 275 (390)
Q Consensus 202 yd~~~~~W~~~~~~p~~r~~~~~~------~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 275 (390)
|+.+....- ..-++|..+ .-..+..-+||.+ .++..|++ |+.-+-...+. ..+-
T Consensus 271 w~~~~~s~v------etlyGHqd~v~~IdaL~reR~vtVGgrD-----rT~rlwKi------~eesqlifrg~---~~si 330 (479)
T KOG0299|consen 271 WSIDQLSYV------ETLYGHQDGVLGIDALSRERCVTVGGRD-----RTVRLWKI------PEESQLIFRGG---EGSI 330 (479)
T ss_pred EehhHhHHH------HHHhCCccceeeechhcccceEEecccc-----ceeEEEec------cccceeeeeCC---CCCe
Confidence 444332211 112333222 2356788888875 45677776 33332222222 2222
Q ss_pred eeEEEECCEEEEEcCCCCC
Q 016413 276 RACFVFNDRLFVVGGQEGD 294 (390)
Q Consensus 276 ~~~~~~~~~iyv~GG~~~~ 294 (390)
=+++.+++.=||.|+.++.
T Consensus 331 dcv~~In~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 331 DCVAFINDEHFVSGSDNGS 349 (479)
T ss_pred eeEEEecccceeeccCCce
Confidence 3677889999999998765
No 181
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.38 E-value=4.4e+02 Score=24.31 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=55.8
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 207 (390)
+++|++.=+ |+.. .--|+..|..+..=+.+..-|.+ -...+.+..+|-+ +. ...-.+.+.+||+.+.
T Consensus 117 ~D~LLlAR~-DGh~--nLGvy~ldr~~g~~~~L~~~ps~-----KG~~~~D~a~F~i---~~--~~~g~~~i~~~Dli~~ 183 (339)
T PF09910_consen 117 EDRLLLARA-DGHA--NLGVYSLDRRTGKAEKLSSNPSL-----KGTLVHDYACFGI---NN--FHKGVSGIHCLDLISG 183 (339)
T ss_pred cCEEEEEec-CCcc--eeeeEEEcccCCceeeccCCCCc-----CceEeeeeEEEec---cc--cccCCceEEEEEccCC
Confidence 567777643 2222 12488899998887777665553 2334455444433 21 1234789999999999
Q ss_pred Ce--EeCCCC------C-CCCCCceEEEECCEEEEEc
Q 016413 208 KW--DSIPPL------P-SPRYSPATQLWRGRLHVMG 235 (390)
Q Consensus 208 ~W--~~~~~~------p-~~r~~~~~~~~~~~iyv~G 235 (390)
+| +..... + ..|..-.++...+++|.|=
T Consensus 184 ~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~ 220 (339)
T PF09910_consen 184 KWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV 220 (339)
T ss_pred eEEEEecccccCCCCCceEeeccccEEEEeeeEEEEE
Confidence 99 554311 1 1233345566677776663
No 182
>PTZ00421 coronin; Provisional
Probab=29.69 E-value=5.7e+02 Score=25.43 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=35.4
Q ss_pred CEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE-EeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (390)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 207 (390)
+.+++.||.++ .+.+||+.+.+-.. .+... ...-.+++ ..++.+++.|+.+ ..+.+||+.+.
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~--~l~~h-~~~V~sla~spdG~lLatgs~D--------g~IrIwD~rsg 200 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVE--VIKCH-SDQITSLEWNLDGSLLCTTSKD--------KKLNIIDPRDG 200 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEE--EEcCC-CCceEEEEEECCCCEEEEecCC--------CEEEEEECCCC
Confidence 35777887763 48888988764221 12110 01112222 2367777777653 34778998765
Q ss_pred C
Q 016413 208 K 208 (390)
Q Consensus 208 ~ 208 (390)
.
T Consensus 201 ~ 201 (493)
T PTZ00421 201 T 201 (493)
T ss_pred c
Confidence 4
No 183
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=29.13 E-value=8.3e+02 Score=27.12 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=36.9
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC-------------CCCCcceEEEEe--CCEEEEEeceeCCCC
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-------------DMAHSHLGVVSD--GRYIYIVSGQYGPQC 192 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~-------------~~~r~~~~~~~~--~~~iyv~GG~~~~~~ 192 (390)
++.|||.-..+ ..+.++|+.++.=+.+..-.. ..-..-..+++. ++.|||....
T Consensus 635 gn~LYVaDt~n------~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~----- 703 (1057)
T PLN02919 635 KNLLYVADTEN------HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG----- 703 (1057)
T ss_pred CCEEEEEeCCC------ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----
Confidence 35678764322 347778887765443321100 000111234443 6789987531
Q ss_pred CCCCceEEEEECCCCCeEe
Q 016413 193 RGPTSRTFVLDSETRKWDS 211 (390)
Q Consensus 193 ~~~~~~v~~yd~~~~~W~~ 211 (390)
...+++||+.+.....
T Consensus 704 ---~~~I~v~d~~~g~v~~ 719 (1057)
T PLN02919 704 ---QHQIWEYNISDGVTRV 719 (1057)
T ss_pred ---CCeEEEEECCCCeEEE
Confidence 4568888887765543
No 184
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=28.90 E-value=4.9e+02 Score=24.40 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=35.5
Q ss_pred CcEEeeC-CCCCeEECCCC-CCCCCcceeEEEEECC-EEEEEcCCCCCCCcceeeEEeeeEEEeecCccceeeccC
Q 016413 315 GDVYMLD-DEMKWKVLPPM-PKPNSHIECAWVIVNN-SIIITGGTTEKHPMTKRMILVGEVFQFHLDSLVIIYHYR 387 (390)
Q Consensus 315 ~~v~~yd-~~~~W~~~~~~-~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 387 (390)
+.|..|+ ....-+...+. -.|-.+..+-+.--++ -.|++.-.+++- +++.||....+..++++
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV----------~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTV----------DVLEYNPAVGKFEELQT 232 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEE----------EEEEEcCCCceEEEeee
Confidence 4588887 65454443311 1333333343233344 478887776553 58888887777776654
No 185
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.68 E-value=4.5e+02 Score=27.25 Aligned_cols=16 Identities=13% Similarity=0.443 Sum_probs=12.1
Q ss_pred EEECCEEEEEcCCCCC
Q 016413 344 VIVNNSIIITGGTTEK 359 (390)
Q Consensus 344 ~~~~~~l~v~GG~~~~ 359 (390)
...+|.+++.||-+++
T Consensus 627 FS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 627 FSRDGNVLASGGADNS 642 (707)
T ss_pred EecCCCEEEecCCCCe
Confidence 3468999999997654
No 186
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=28.49 E-value=2.3e+02 Score=26.22 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=35.4
Q ss_pred CEEEEEecCCCCCCCCCeEEEEeCCCCcee-ec---CCCCCCCCCcceEEEEeCCEEEEEe
Q 016413 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWV-DR---FDMPKDMAHSHLGVVSDGRYIYIVS 185 (390)
Q Consensus 129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~---~~l~~~~~r~~~~~~~~~~~iyv~G 185 (390)
+.+-++||......+.++|.++|-..+.=. ++ .+...-.-|..+-++++.++|||+-
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~Vyt 119 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYT 119 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEE
Confidence 567777887766777899999994443321 11 1111000145667888899999985
No 187
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=26.71 E-value=6.1e+02 Score=24.79 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=41.6
Q ss_pred ceEEEEECCCC-C-eEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceEEeeeeccccccCCeEEccCCCCCCC
Q 016413 197 SRTFVLDSETR-K-WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP 274 (390)
Q Consensus 197 ~~v~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~ 274 (390)
..+.+||.+.+ . =+.+...+......+. .-.+++++.|+.+ ..+..|++ .+.+=...-.--....
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f-~p~g~~i~Sgs~D-----~tvriWd~-------~~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAF-SPDGNLLVSGSDD-----GTVRIWDV-------RTGECVRKLKGHSDGI 291 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEe-cCCCCEEEEecCC-----CcEEEEec-------cCCeEEEeeeccCCce
Confidence 44677887433 2 2333344444422222 3344788888764 46888986 3322222111112222
Q ss_pred ceeEEEECCEEEEEcCCCC
Q 016413 275 HRACFVFNDRLFVVGGQEG 293 (390)
Q Consensus 275 ~~~~~~~~~~iyv~GG~~~ 293 (390)
...+..-++.+++.+..++
T Consensus 292 s~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred EEEEECCCCCEEEEcCCCc
Confidence 1223344677888886644
No 188
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=25.52 E-value=2.3e+02 Score=22.67 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCEEEEEeceeCCCCCCCCceEEEEECCCCC---eEeCCCCCCCCCCceEEEE---CCEEEEEccCC
Q 016413 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK---WDSIPPLPSPRYSPATQLW---RGRLHVMGGSK 238 (390)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~---W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~ 238 (390)
+..+.++|- .+.+..||.+.+. ++++ |.+........+ ...+.++||..
T Consensus 63 ~~D~LliGt---------~t~llaYDV~~N~d~Fyke~---~DGvn~i~~g~~~~~~~~l~ivGGnc 117 (136)
T PF14781_consen 63 GRDCLLIGT---------QTSLLAYDVENNSDLFYKEV---PDGVNAIVIGKLGDIPSPLVIVGGNC 117 (136)
T ss_pred CcCEEEEec---------cceEEEEEcccCchhhhhhC---ccceeEEEEEecCCCCCcEEEECceE
Confidence 345777763 5779999998876 4444 333222222222 45788888853
No 189
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=24.55 E-value=4.4e+02 Score=22.42 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=47.6
Q ss_pred EEecCCCchhHHHhhhcccccccCCCCeEECCCCC-----CcCCCceEEEECC-E-EEEEecCCCCCCCCCeEEEEeCCC
Q 016413 82 AVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAP-----VPRLDGAAIQIKN-L-FYVFAGYGSLDYVHSHVDVYNFTD 154 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-----~~R~~~~~~~~~~-~-lyv~GG~~~~~~~~~~v~~yd~~~ 154 (390)
+++.+.|.+....--..+|.+|..++.|..+.--+ .|. -+.-+++ . ++++|...+.-.---.+++|++.+
T Consensus 73 aciegkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~t 149 (200)
T PF15525_consen 73 ACIEGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNT 149 (200)
T ss_pred EEEEcCCCccccccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccC
Confidence 44455555544333448999999999887653212 233 2333443 3 555553322211124699999999
Q ss_pred CceeecCCCCC
Q 016413 155 NKWVDRFDMPK 165 (390)
Q Consensus 155 ~~W~~~~~l~~ 165 (390)
+.=+.+.+...
T Consensus 150 g~~~~ly~~~d 160 (200)
T PF15525_consen 150 GNLTELYEWKD 160 (200)
T ss_pred CceeEeeeccc
Confidence 99888876644
No 190
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=24.42 E-value=5.8e+02 Score=23.70 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=33.8
Q ss_pred CCEEEEEeceeCCCCCCCCceEEEEECCCCCe-EeCC---CCC--CCCCCceEEEECCEEEEEc
Q 016413 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW-DSIP---PLP--SPRYSPATQLWRGRLHVMG 235 (390)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~---~~p--~~r~~~~~~~~~~~iyv~G 235 (390)
-+.+-++||..... .+.+.+.++|-...+- .++. +.. .-|..+.++++.++|||+-
T Consensus 58 ~N~laLVGGg~~pk--y~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~Vyt 119 (346)
T KOG2111|consen 58 SNYLALVGGGSRPK--YPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYT 119 (346)
T ss_pred hceEEEecCCCCCC--CCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEE
Confidence 45666777755433 4678999998554432 1111 211 2255667788888888883
No 191
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=23.69 E-value=5.6e+02 Score=23.30 Aligned_cols=99 Identities=20% Similarity=0.345 Sum_probs=53.6
Q ss_pred CCEEEEE-ecC-CCCC----CCCCeEEEEeCCCCceeecCCCCCCC--CCcceE-EEEeC-------CEEEEEeceeCCC
Q 016413 128 KNLFYVF-AGY-GSLD----YVHSHVDVYNFTDNKWVDRFDMPKDM--AHSHLG-VVSDG-------RYIYIVSGQYGPQ 191 (390)
Q Consensus 128 ~~~lyv~-GG~-~~~~----~~~~~v~~yd~~~~~W~~~~~l~~~~--~r~~~~-~~~~~-------~~iyv~GG~~~~~ 191 (390)
.++|+|+ -|. +... ....++..||+.+++=.+.-.+|... +.+... .++.. +.+||.- .
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD---~-- 85 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD---S-- 85 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE---T--
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC---C--
Confidence 5789998 343 2211 22368999999999854433333321 123333 33332 4678763 1
Q ss_pred CCCCCceEEEEECCCC-CeEeCCCCCCCCCCceEEEECCEEEEE
Q 016413 192 CRGPTSRTFVLDSETR-KWDSIPPLPSPRYSPATQLWRGRLHVM 234 (390)
Q Consensus 192 ~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~~~~iyv~ 234 (390)
....+.+||..++ .|+.+.....+.-.+.....++..+-.
T Consensus 86 ---~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~ 126 (287)
T PF03022_consen 86 ---GGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQW 126 (287)
T ss_dssp ---TTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEE
T ss_pred ---CcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEec
Confidence 1347999999985 577776544444334445556655533
No 192
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=22.61 E-value=6.2e+02 Score=25.19 Aligned_cols=85 Identities=9% Similarity=-0.019 Sum_probs=48.3
Q ss_pred CCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCCCCCCCCC
Q 016413 142 YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS 221 (390)
Q Consensus 142 ~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 221 (390)
..++.++.+|+.+..=..-+++..- | +..+...++.+.+++|..+.. .-.+...|+.+-.=..-+.-+..+..
T Consensus 372 ~~ls~LvllD~~tg~~l~~S~~~~I--r-~r~~~~~~~~~vaI~g~~G~~----~ikLvlid~~tLev~kes~~~i~~~S 444 (489)
T PF05262_consen 372 HYLSELVLLDSDTGDTLKRSPVNGI--R-GRTFYEREDDLVAIAGCSGNA----AIKLVLIDPETLEVKKESEDEISWQS 444 (489)
T ss_pred CcceeEEEEeCCCCceeccccccee--c-cceeEEcCCCEEEEeccCCch----heEEEecCcccceeeeeccccccccC
Confidence 3568899999999865555555542 2 334556778888999885543 22233346665443333333332222
Q ss_pred ceEEEECCEEEEE
Q 016413 222 PATQLWRGRLHVM 234 (390)
Q Consensus 222 ~~~~~~~~~iyv~ 234 (390)
.+.+.++.+|++
T Consensus 445 -~l~~~~~~iyaV 456 (489)
T PF05262_consen 445 -SLIVDGQMIYAV 456 (489)
T ss_pred -ceEEcCCeEEEE
Confidence 344556677755
No 193
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=22.61 E-value=4.7e+02 Score=22.03 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=39.7
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEEECCCC
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 207 (390)
++++.|+-|... ..+..||++. ..+..++.. .+ ....-.-+|++.++||.... ..++..||..
T Consensus 71 g~~favi~g~~~-----~~v~lyd~~~---~~i~~~~~~-~~-n~i~wsP~G~~l~~~g~~n~-----~G~l~~wd~~-- 133 (194)
T PF08662_consen 71 GNEFAVIYGSMP-----AKVTLYDVKG---KKIFSFGTQ-PR-NTISWSPDGRFLVLAGFGNL-----NGDLEFWDVR-- 133 (194)
T ss_pred CCEEEEEEccCC-----cccEEEcCcc---cEeEeecCC-Cc-eEEEECCCCCEEEEEEccCC-----CcEEEEEECC--
Confidence 456666655322 2588999863 333333331 12 22222346778888886432 3568899987
Q ss_pred CeEeCCCC
Q 016413 208 KWDSIPPL 215 (390)
Q Consensus 208 ~W~~~~~~ 215 (390)
+.+.+...
T Consensus 134 ~~~~i~~~ 141 (194)
T PF08662_consen 134 KKKKISTF 141 (194)
T ss_pred CCEEeecc
Confidence 45555443
No 194
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.10 E-value=5.4e+02 Score=22.51 Aligned_cols=99 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred eEEEECCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEEeCCEEEEEeceeCCCCCCCCceEEEE
Q 016413 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (390)
Q Consensus 123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 202 (390)
++...++++|.--|.-+... +.++|+.+.+=..-.+++ |..-++-+.+.+++.+|..- -.-...+.|
T Consensus 50 GL~~~~g~i~esTG~yg~S~----ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LT--------w~egvaf~~ 116 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSK----IRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLT--------WKEGVAFKY 116 (262)
T ss_pred ceeeeCCEEEEeccccccce----eEEEeccCceEEEEeecC-CccccccceeeccceEEEEE--------eccceeEEE
Q ss_pred ECCCCCeEeCCCCCCCCCCceEEEECCEEEEEcc
Q 016413 203 DSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG 236 (390)
Q Consensus 203 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 236 (390)
|+.+ .+.+...+-+..+-+.+.-+..|++--|
T Consensus 117 d~~t--~~~lg~~~y~GeGWgLt~d~~~LimsdG 148 (262)
T COG3823 117 DADT--LEELGRFSYEGEGWGLTSDDKNLIMSDG 148 (262)
T ss_pred ChHH--hhhhcccccCCcceeeecCCcceEeeCC
No 195
>PRK04043 tolB translocation protein TolB; Provisional
Probab=21.90 E-value=7.3e+02 Score=24.00 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=59.8
Q ss_pred cccccccCCCCeEECCCCCCcCCCceEEEECC-EEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEEE
Q 016413 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (390)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~~ 176 (390)
.+|.+|..+.+=+.+...+.. .......-++ +|.+.-..++ ..+++.+|..+..++++...+. .-.......
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~--~d~~p~~SP 286 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPG--IDVNGNFVE 286 (419)
T ss_pred EEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCC--ccCccEECC
Confidence 677788776655555432211 1111122244 5655443322 2579999999999998866543 112223333
Q ss_pred eCCEEEEEeceeCCCCCCCCceEEEEECCCCCeEeCCC
Q 016413 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (390)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (390)
.+.+||..-... ....++++|..+...+++..
T Consensus 287 DG~~I~F~Sdr~------g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 287 DDKRIVFVSDRL------GYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CCCEEEEEECCC------CCceEEEEECCCCCeEeCcc
Confidence 455677664321 14689999999988877653
No 196
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=21.03 E-value=6.6e+02 Score=23.12 Aligned_cols=98 Identities=13% Similarity=0.187 Sum_probs=50.6
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCC--CCCCcceEEE-EeCCEEEEEe-ceeCCCCCCCCceEEEEE
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK--DMAHSHLGVV-SDGRYIYIVS-GQYGPQCRGPTSRTFVLD 203 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~--~~~r~~~~~~-~~~~~iyv~G-G~~~~~~~~~~~~v~~yd 203 (390)
.+..+..||.+ +.+-+|++.+..=+-..++.. +......++. .+++.-.+.| | -...-.+|
T Consensus 108 Sg~~VAcGGLd------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG---------D~TCalWD 172 (343)
T KOG0286|consen 108 SGNFVACGGLD------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG---------DMTCALWD 172 (343)
T ss_pred CCCeEEecCcC------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC---------CceEEEEE
Confidence 56788889987 357788887553222212111 1123333333 3344333443 3 23456678
Q ss_pred CCCCCeEeCCCCCCCCCCceE-------EEECCEEEEEccCCCCCCCCCcceEEe
Q 016413 204 SETRKWDSIPPLPSPRYSPAT-------QLWRGRLHVMGGSKENRHTPGLEHWSI 251 (390)
Q Consensus 204 ~~~~~W~~~~~~p~~r~~~~~-------~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (390)
+++.+=...- .+|+. ...+.+.||-||.+. ....||+
T Consensus 173 ie~g~~~~~f------~GH~gDV~slsl~p~~~ntFvSg~cD~-----~aklWD~ 216 (343)
T KOG0286|consen 173 IETGQQTQVF------HGHTGDVMSLSLSPSDGNTFVSGGCDK-----SAKLWDV 216 (343)
T ss_pred cccceEEEEe------cCCcccEEEEecCCCCCCeEEeccccc-----ceeeeec
Confidence 8776432211 12221 111678999999853 4567775
No 197
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=20.75 E-value=6.2e+02 Score=22.73 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=32.8
Q ss_pred CCEEEEEecCCCCCCCCCeEEEEeCCCCceeecCCCCCCCCCcceEEE-EeCCEEEEEeceeC
Q 016413 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV-SDGRYIYIVSGQYG 189 (390)
Q Consensus 128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~l~~~~~r~~~~~~-~~~~~iyv~GG~~~ 189 (390)
+..+||.||.+. .+++||-.|..=...-.-..+ -.-|++- .-+|.+|..|..++
T Consensus 235 ~k~~fVaGged~------~~~kfDy~TgeEi~~~nkgh~--gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 235 KKEFFVAGGEDF------KVYKFDYNTGEEIGSYNKGHF--GPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred CCceEEecCcce------EEEEEeccCCceeeecccCCC--CceEEEEECCCCceeeccCCCc
Confidence 447999999874 488888887764333111111 1122222 24899999997665
No 198
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=20.49 E-value=6.8e+02 Score=23.08 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=17.9
Q ss_pred CCEEEEEeceeCCCCCCCCceEEE-EECCCCCeEeC
Q 016413 178 GRYIYIVSGQYGPQCRGPTSRTFV-LDSETRKWDSI 212 (390)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~-yd~~~~~W~~~ 212 (390)
+|..++.||++.. --+|. |.-.++.|..-
T Consensus 58 ~gs~~aSgG~Dr~------I~LWnv~gdceN~~~lk 87 (338)
T KOG0265|consen 58 DGSCFASGGSDRA------IVLWNVYGDCENFWVLK 87 (338)
T ss_pred CCCeEeecCCcce------EEEEeccccccceeeec
Confidence 6778888887543 12333 55666777654
Done!