BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016414
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CXH|A Chain A, Crystal Structure Of Probable Ribosomal Biogenesis Protein
From Aeropyrum Pernix K1
Length = 217
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 130 KILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNR 189
+IL+TT R S R +F+ +L + IP + + RG Y +++ A + I+VV R
Sbjct: 35 RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSXEELAREAIIRGADRIVVVGERR 94
Query: 190 REPDALLIIGLPDGP 204
P + + + +GP
Sbjct: 95 GNPGIIRVYAV-EGP 108
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 20/67 (29%)
Query: 163 GTYDLKKIIEYAKKKDFTSIIVVHTNRRE-------------------PDALLIIGLPDG 203
G YD+K I+EY K+D +I+ VH E D + +IG P G
Sbjct: 63 GNYDVKDIVEYPGKEDL-AIVHVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKG 121
Query: 204 PTAHFKL 210
+K+
Sbjct: 122 AQTKYKM 128
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 147 ISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIV 184
+ + ++ PNS G Y +KKII Y K+D + I V
Sbjct: 46 VGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQV 83
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 9/61 (14%)
Query: 166 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLI----IGLPDGPTAHF-KLSKLVLRKDIK 220
++ ++IEYAK KD I +++ DA+L+ +G+ + P AHF K+SK + D+K
Sbjct: 113 EVTELIEYAKSKDIGLIPAINS-PGHMDAMLVAMEKLGIKN-PQAHFDKVSKTTM--DLK 168
Query: 221 N 221
N
Sbjct: 169 N 169
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 9/61 (14%)
Query: 166 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLI----IGLPDGPTAHF-KLSKLVLRKDIK 220
++ ++IEYAK KD I +++ DA+L+ +G+ + P AHF K+SK + D+K
Sbjct: 96 EVTELIEYAKSKDIGLIPAINS-PGHMDAMLVAMEKLGIKN-PQAHFDKVSKTTM--DLK 151
Query: 221 N 221
N
Sbjct: 152 N 152
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 9/61 (14%)
Query: 166 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLI----IGLPDGPTAHF-KLSKLVLRKDIK 220
++ ++IEYAK KD I +++ DA+L+ +G+ + P AHF K+SK + D+K
Sbjct: 96 EVTELIEYAKSKDIGLIPAINS-PGHMDAMLVAMEKLGIKN-PQAHFDKVSKTTM--DLK 151
Query: 221 N 221
N
Sbjct: 152 N 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,620,576
Number of Sequences: 62578
Number of extensions: 422256
Number of successful extensions: 728
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 9
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)