BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016414
(390 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1
Length = 349
Score = 265 bits (676), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 155/354 (43%), Positives = 206/354 (58%), Gaps = 61/354 (17%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNKE+R + + K Q ++++KL A+ +K LG++ P + P+TI+N R
Sbjct: 55 SEIKNKERRHLMFTRWKQQ---QRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P+D+E+ DEF+S + +PKILITT R +L +VIPNSH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 171
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291
Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
H RYIF +++ G
Sbjct: 292 FH--------------------------------RYIFRSEKKVG--------------- 304
Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 390
+QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 305 ---------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2
Length = 349
Score = 263 bits (673), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 212/376 (56%), Gaps = 66/376 (17%)
Query: 22 DKNNENISKKMKKEILP-----SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRA 76
D EN + K P S IKNK++R + + K Q ++++KL A+ +K
Sbjct: 33 DGATENGVQPPKAAAFPPGFSISEIKNKQRRHLMFTRWKQQ---QRKEKLAAKKKLKKER 89
Query: 77 LELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTC 136
LG++ P + P+TI+N R DET P+D+E+ DEF+S + +PKILITT
Sbjct: 90 EALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTS 149
Query: 137 RFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALL 196
R +L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L+
Sbjct: 150 DRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLI 209
Query: 197 IIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQ 255
+ LP+GPTAHFK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP
Sbjct: 210 LSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPH 269
Query: 256 SPEFRGRRVVTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIF 315
+P+F GR+V TFHNQRD+IFFR H RYIF
Sbjct: 270 NPQFIGRQVATFHNQRDYIFFRFH--------------------------------RYIF 297
Query: 316 ETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEW 375
+++ G +QE GPRFTLKL SLQ GTFD+K GE+EW
Sbjct: 298 RSEKKVG------------------------IQELGPRFTLKLRSLQKGTFDSKYGEYEW 333
Query: 376 VHKP-EMDTSRRRFFL 390
VHKP EMDTSRR+F L
Sbjct: 334 VHKPREMDTSRRKFHL 349
>sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2
Length = 349
Score = 262 bits (669), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 152/354 (42%), Positives = 207/354 (58%), Gaps = 61/354 (17%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNK++R + + K Q ++++KL A+ +K LG++ P + P+TI+N R
Sbjct: 55 SEIKNKQRRHLMFTRWKQQ---QRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 111
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P+D+E+ DEF+S + +PKILITT R +L +VIP+SH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 171
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291
Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
H RYIF++++ G
Sbjct: 292 FH--------------------------------RYIFKSEKKVG--------------- 304
Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 390
+QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 305 ---------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|Q8AVP1|RPF1_XENLA Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1
Length = 343
Score = 257 bits (657), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 152/354 (42%), Positives = 200/354 (56%), Gaps = 61/354 (17%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNK++R + KLK +K+ EK K R E+ AL G++ P + P+TIEN R
Sbjct: 49 SEIKNKQRRQFMFIKLKQEKRKEKLILRKKR-KKEREAL--GDKAPPKPVPKTIENQRVY 105
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P D+E+ DEF+ + PKILITT R F +L S+IPNS
Sbjct: 106 DETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSD 165
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKKII +D+T ++V++ +R+ P+ L++ LPDGPTAHFK+S + LRK+
Sbjct: 166 VYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKE 225
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
+K G PT H PE++LNNF TRLGH +GR+ SL+P P F GR+V TFHNQRD+IFFR
Sbjct: 226 MKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFR 285
Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
+H RY+F++++ G
Sbjct: 286 YH--------------------------------RYLFKSEKKVG--------------- 298
Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 390
+QE GPRFTLKL SLQ GTFD+K GE+EWVHK EMDTSRR+F L
Sbjct: 299 ---------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRKFHL 343
>sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2
Length = 345
Score = 248 bits (633), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 194/341 (56%), Gaps = 60/341 (17%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNK++R + + K Q++ EK K E+ AL G++ P + P+TI+N R
Sbjct: 55 SEIKNKQRRHLMFTRWKQQQRKEKLAAKKKL-KREREAL--GDKAPPKPVPKTIDNQRVY 111
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P+D+E+ DEF+S + +PKILITT R +L +VIP+SH
Sbjct: 112 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 171
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+
Sbjct: 172 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 231
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR
Sbjct: 232 IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 291
Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
H RYIF++++ G
Sbjct: 292 FH--------------------------------RYIFKSEKKVG--------------- 304
Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 378
+QE GPRFTLKL SLQ GTFD+K GE+EWVHK
Sbjct: 305 ---------IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHK 336
>sp|Q6IQU6|RPF1_DANRE Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1
Length = 330
Score = 242 bits (618), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 200/354 (56%), Gaps = 61/354 (17%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S IKNK++R H K+ +++K+++ + +K L ++ P + P+TIEN R
Sbjct: 36 SEIKNKQRR---HTMFLKLKEEKRKKRMELKKKKKKERKALDDKAPPKEVPKTIENQRIY 92
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
DET P+D+E+ DEFS+ + PK+LITT R F +L +VIP+++
Sbjct: 93 DETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAY 152
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
Y R LKK+I + FT ++V++ +R+ P+ +++ LPDGPTAHFK+S + LRK+
Sbjct: 153 VYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKE 212
Query: 219 IKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFR 277
+K G NPT H PE++LNNF TRLGH +GRL +LFP P+F GR+V TFHNQRDFIFFR
Sbjct: 213 MKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFR 272
Query: 278 HHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEK 337
H RYIF+ ++ G
Sbjct: 273 FH--------------------------------RYIFKNEKKVG--------------- 285
Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 390
+QE GPRFTLKL SLQ GTFD+K GE+EWVHK EMD+SRR+F L
Sbjct: 286 ---------IQELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKFHL 330
>sp|P54073|YUY1_CAEEL Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans
GN=F44G4.1 PE=4 SV=4
Length = 384
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 192/367 (52%), Gaps = 65/367 (17%)
Query: 34 KEILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRAL---------ELGEEPP 84
+E+L +K + KH K ++ K LK +KRA ELGE P
Sbjct: 73 QELLEKYEASKATATKTKDDFKHLPKSQRGKALKRALRKDKRARQGERAQIRDELGESAP 132
Query: 85 ARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGP 144
+ P+TIE+ RE D T+ +DDE+ DEF+ + +PK++IT
Sbjct: 133 QKEVPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTF 192
Query: 145 AFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 204
F EL IPNS + R LK IIE AK+++FT ++VVH +R++P+ ++ LP+GP
Sbjct: 193 KFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGP 252
Query: 205 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 264
TA+FK++ L +D+K G T H PE++LNNF TRLGH + R++ LFP P+F GRRV
Sbjct: 253 TAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRV 312
Query: 265 VTFHNQRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSD 324
VTFHNQRD+IFFRHH RY F+ + SK +
Sbjct: 313 VTFHNQRDYIFFRHH--------------------------------RYEFKKEGSKAA- 339
Query: 325 ANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK-PEMDT 383
L E GPRFTL+L LQ GTFD K GEFEWV K EM+T
Sbjct: 340 ----------------------LLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMET 377
Query: 384 SRRRFFL 390
SRRRFFL
Sbjct: 378 SRRRFFL 384
>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster
GN=CG6712 PE=2 SV=1
Length = 394
Score = 208 bits (530), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 144/359 (40%), Positives = 197/359 (54%), Gaps = 72/359 (20%)
Query: 39 SMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
S ++NKE+R A++ K+K +K +K ++ +AR A A P TIE+ RE
Sbjct: 101 SWMRNKEQRLALYKKMKKEKHKKKMQERRARRKAGVPA------NPGH----TIESLREK 150
Query: 99 DET----VCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVI 154
D+T + D++EL D+FSS ++ PK+LIT + F EL +
Sbjct: 151 DQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIF 210
Query: 155 PNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLV 214
PN+ R +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHFKLS +
Sbjct: 211 PNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVK 270
Query: 215 LRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDF 273
L DIK +H T H PE++LNNF TRLG VGR++ +LF PEFRGRR VTFHNQRD+
Sbjct: 271 LTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDY 330
Query: 274 IFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDA 333
IFFRHHR YE TKE GK+ K
Sbjct: 331 IFFRHHR----------------------------YEF-----TKE-------GKRVK-- 348
Query: 334 KSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWV--HKPEMDTSRRRFFL 390
L+E GPRFTLKL SLQ GTFD+K G++ W+ +K SRRRFFL
Sbjct: 349 -------------LRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394
>sp|P38805|RPF1_YEAST Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1
Length = 295
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 130/356 (36%), Positives = 182/356 (51%), Gaps = 75/356 (21%)
Query: 41 IKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDE 100
I NK KR + A +KH+K E+ + R E+ EL E+ +TIENTR DE
Sbjct: 9 ITNKLKRQEIFADIKHEKNKERHTMRRKRAKEERENPELREQRLKENVTQTIENTRVYDE 68
Query: 101 TVCRP---DDDEL--FAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIP 155
T+ + D+D+L + ++++E PKI +TT F + L+ ++P
Sbjct: 69 TINKEVEGDEDDLMRYFNSNSNE---------PPKIFLTTNVNAKKSAYEFANILIEILP 119
Query: 156 NSHYYKRG-TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLV 214
N + KR Y LK+I + K++FT I++++ ++++ L I LP+GPT +FKLS V
Sbjct: 120 NVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV 179
Query: 215 LRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFI 274
K I HG PT HIPEL+LNNF TRLG VGRL QS+ PQ+P+ GR+V+T HNQRD+I
Sbjct: 180 EVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYI 239
Query: 275 FFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAK 334
FFR H RY+F+ E G
Sbjct: 240 FFRRH--------------------------------RYVFKDNERVG------------ 255
Query: 335 SEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
LQE GP+FTLKL LQ G + E EW HKPEMD +++F+L
Sbjct: 256 ------------LQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295
>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1
Length = 306
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 188/358 (52%), Gaps = 63/358 (17%)
Query: 41 IKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRA-----LELGEEPPARMTPRTIENT 95
IKNK R + K HQK +K ++ K R E++ L L E PA TIE+
Sbjct: 4 IKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPA-----TIESK 58
Query: 96 REPDETVCRPD-DDELFAGNDADEFSSIL-KQGCAPKILITTCRFNSNRGPAFISELLSV 153
R DET+ D+EL A DEFS+ ++ PK+L+TT + S + F SELL
Sbjct: 59 RVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDC 118
Query: 154 IPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSK 212
PN+ + KR G ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+ +F LS
Sbjct: 119 FPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSN 178
Query: 213 LVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRD 272
L K+I NHG TGHIPEL++NNF+TRLG V R QSLF Q+P+ +GR+VVT H QRD
Sbjct: 179 LQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRD 238
Query: 273 FIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKD 332
F+FFR H RY F K S D G
Sbjct: 239 FLFFRRH--------------------------------RYAFREK-SNMPDGIG----- 260
Query: 333 AKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
T LQE GPRFT++L +Q G +D K GE + ++ RR+F+L
Sbjct: 261 ------------TGLQELGPRFTMRLRMVQKGVWDRKEGEVFFESNAGEESDRRKFWL 306
>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans
GN=ZK795.3 PE=4 SV=1
Length = 292
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PKI+ITT R S+R F E+ + PN+ RG YD+K++++ +K +D T +I+
Sbjct: 78 PKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTET 137
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R PD +L+ LP GPTA F ++ +V+R DI N G + P L+ +N ++LGHR +
Sbjct: 138 RGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTI 197
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
++ LFP P+ +R++TF N D+I FRHH
Sbjct: 198 LKHLFP-VPKPDSKRIITFSNSEDYISFRHH 227
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 347 LQECGPRFTLKLVSLQHGTFDT-KGGEFEWVHKPEMDTSRRRFFL 390
L E GPRF LK ++ GT +T E EWV + +T+R+R FL
Sbjct: 239 LTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp4 PE=3 SV=1
Length = 289
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 88/151 (58%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK+L+TT R S+R F E+ +IPNS+ RG + ++E A+ D T I+++H +
Sbjct: 84 PKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEH 143
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R PD L+I LP GPT F L +VLR DI N G + P L+ N ++LG RV
Sbjct: 144 RGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTA 203
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
+ +LFP P+ RVVTF N D+I FRHH
Sbjct: 204 LSALFPPDPKDTTPRVVTFANTDDYISFRHH 234
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 337 KTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP 379
KT +++I L E GPRF +KL + GT D + EW KP
Sbjct: 238 KTGPKQII--LSEAGPRFEMKLFEITLGTVDMVDADVEWKLKP 278
>sp|Q0VD01|IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus
GN=IMP4 PE=2 SV=1
Length = 291
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R P L++ LP GPTA+F L +V+R DI + G + P L+++ F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDI 202
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
++ LFP P+ RRV+TF NQ D+I FRHH
Sbjct: 203 LRYLFP-VPKDDSRRVITFANQDDYISFRHH 232
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 337 KTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 390
KT+ + V L E GPRF LKL ++ GT + + + EW P +T+ +R FL
Sbjct: 236 KTNHRNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288
>sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=IMP4 PE=3 SV=2
Length = 283
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 107/210 (50%), Gaps = 11/210 (5%)
Query: 74 KRALELGEEPPARMTPRT-IENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKIL 132
K+AL G+ P + T ++ + DE+ DDE S L PK++
Sbjct: 33 KQALAQGKPLPKEVADDTKLQRDYQYDESAQESIDDEY----------SALSGIVDPKVI 82
Query: 133 ITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREP 192
+TT R S R F E+ + P S RG Y +K +++ +K T ++V+H +R P
Sbjct: 83 VTTSRDPSTRLSQFAKEVKLLFPTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVP 142
Query: 193 DALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSL 252
AL I P GPTA F L +VLR DI N GN + P L+ +NF T LG RV ++++ +
Sbjct: 143 TALTISHFPHGPTASFSLHNVVLRHDILNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHM 202
Query: 253 FPQSPEFRGRRVVTFHNQRDFIFFRHHRCV 282
FP + RV+TF N+ DFI R H V
Sbjct: 203 FPPGVKKDSPRVITFANRGDFISVRQHVYV 232
>sp|Q6FNN7|IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1
Length = 288
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 107 DDELFAGNDADEFSSILKQGCA-PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTY 165
D+E AG D DE+S+ G ++++TT R S+R F E+ + PN+ RG Y
Sbjct: 64 DNEDEAGVD-DEYSA--SSGIVEARVIVTTSRDPSSRLAQFAKEIKLLFPNAVRLNRGNY 120
Query: 166 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNP 225
+ ++ KK T +IV+H +R P +L + P GPTA F L +VLR DI N GN
Sbjct: 121 VMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNRGNQ 180
Query: 226 TGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRCV 282
+ P L+ +NF T LG+RV ++++LFP P+ RV+TF N+ DFI R H V
Sbjct: 181 SEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFISVRQHVYV 237
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 347 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
+ E GPRF ++L L+ GT + K + EW + + T+ R+ +L
Sbjct: 245 MAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFVRTANRKDYL 288
>sp|P53941|IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1
SV=1
Length = 290
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 14/243 (5%)
Query: 44 KEKRSAVHAKLK--HQKKVEKRKKLKARDAAEKRAL--ELGEEPPARMTPRTIENTREPD 99
+E+R ++ K + ++++++++ + A+ + L EL E+ + R ++ +E +
Sbjct: 7 RERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESE 66
Query: 100 ETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHY 159
E DDE A S I+ P+I++TT R S R F E+ + PN+
Sbjct: 67 EADDLQVDDEYAAT------SGIMD----PRIIVTTSRDPSTRLSQFAKEIKLLFPNAVR 116
Query: 160 YKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDI 219
RG Y + +++ KK T ++V+H +R P +L I P GPTA F L +V+R DI
Sbjct: 117 LNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI 176
Query: 220 KNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
N GN + P L+ +NF T LG RV +++ LF P+ RV+TF N+ DFI R H
Sbjct: 177 INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
Query: 280 RCV 282
V
Sbjct: 237 VYV 239
>sp|Q5PQR5|IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus
norvegicus GN=Imp4 PE=2 SV=1
Length = 291
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
++ LFP P+ RV+TF NQ D+I FRHH
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHH 232
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 347 LQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 390
L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 244 LTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q8VHZ7|IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus
GN=Imp4 PE=2 SV=1
Length = 291
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
++ LFP P+ RV+TF NQ D+I FRHH
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHH 232
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 347 LQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 390
L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 244 LTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q5R947|IMP4_PONAB U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii
GN=IMP4 PE=2 SV=2
Length = 291
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
++ LFP P+ RV+TF NQ D+I FRHH
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHH 232
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 347 LQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 390
L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 244 LTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q96G21|IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens
GN=IMP4 PE=1 SV=1
Length = 291
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 188
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 189 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 248
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 249 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
++ LFP P+ RV+TF NQ D+I FRHH
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHH 232
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 347 LQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 390
L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 244 LTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q6BYD9|IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=IMP4 PE=3 SV=2
Length = 284
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 146/351 (41%), Gaps = 78/351 (22%)
Query: 44 KEKRSAVHAK---LKHQKKVEKRKKLKARDAAEK-RALELGEEPPARMTPRTIENTREPD 99
+E+R ++ K L+ EKR++LKA A+ K + EL E+ + ++ D
Sbjct: 7 RERREYLYRKSLELQESSLTEKRQQLKAALASGKPLSKELAED-------KELQKDFIYD 59
Query: 100 ETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHY 159
E+ DDE A + E PK+LITT R S + F E+ + PNS
Sbjct: 60 ESEQTEIDDEYSALSGISE----------PKVLITTSRNPSVKLLQFSKEIKLMFPNSIK 109
Query: 160 YKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDI 219
RG Y + ++ ++ + +I++H +R P +L I P GP+ F L + LR D+
Sbjct: 110 LNRGNYVITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDL 169
Query: 220 KNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHH 279
GN + P LV NF + LG RV ++++ LFP + RV+TF N DFI RHH
Sbjct: 170 PEIGNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHH 229
Query: 280 RCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTS 339
V K KD
Sbjct: 230 MYV----------------------------------------------KTKDT------ 237
Query: 340 QQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390
L E GPRF ++L L+ G D K E EW + + T R+ +L
Sbjct: 238 -----VELSEVGPRFEMRLYELRLGLLDNKDSEVEWQLRRFIRTGNRKNYL 283
>sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1
Length = 283
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 19/244 (7%)
Query: 42 KNKEKRSAVHAK---LKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREP 98
+ +E+R ++ K L+ K++KR++LKA AL G+ P+ + + E
Sbjct: 5 QARERREYLYRKSLQLQEATKIQKRQQLKA-------ALASGKP-----LPKDVADDEEL 52
Query: 99 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 158
+T+ DE DE+S+ + PK+++TT R S R F E+ + P S
Sbjct: 53 RKTIAY---DESVQDEIDDEYSA-MSGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSI 108
Query: 159 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 218
RG L ++ K + +IV+H +R P A+ + P GPTA+F L +VLR D
Sbjct: 109 RLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHD 168
Query: 219 IKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRH 278
+ + GN + P L+ +NF T LG RV ++++ LFP + RV+TF N+ DFI R
Sbjct: 169 LPDTGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQ 228
Query: 279 HRCV 282
H V
Sbjct: 229 HVYV 232
>sp|Q54N44|PPAN_DICDI Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3
SV=1
Length = 426
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 38/219 (17%)
Query: 200 LPDGPTAHFKLSKLVLRKDI-KNHGNPTG------HIPELVLNNFATRLGH--RVGRLIQ 250
LP GPT FK+ + ++D+ K PT + P +VLN F H V ++Q
Sbjct: 119 LPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFTRGTPHLEMVQNMVQ 178
Query: 251 SLFPQSPEF-----RGRRVVTF--HNQRDFIFFRHHRC-VPLEFISCYMWTILCSYLTSI 302
SLFP + +RVV F + + D + FRH+ V ++ + I+ S + I
Sbjct: 179 SLFPSINVYTLKLSTCKRVVLFNYNKETDNVEFRHYAIKVSNVGVNRSIKRIIQSKIPDI 238
Query: 303 --MKAFCYYECRYIFETKESKGSDAN-----------GKKAKDAKSEK------TSQQKV 343
+ Y + T ES DAN KAK+ K E+ T+Q++
Sbjct: 239 SNLGDISDYVMNGLGAT-ESDYEDANDGQVELSSKMINSKAKNIKLERKGLDINTTQKRA 297
Query: 344 ITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMD 382
I +L+E GPR L L+ ++ + + +++ K +++
Sbjct: 298 I-KLEEIGPRMNLSLLKVEDDLYKGEVLYHQYIKKSDIE 335
>sp|Q91YU8|SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=2
Length = 470
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 27/211 (12%)
Query: 195 LLIIGLPDGPTAHFKLSKLVLRKDI-------KNHGNPTGHIPELVLNNFATRLGH--RV 245
L ++ LP GPT F++SK L +D+ + H H P LVLN+F + H +
Sbjct: 97 LKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGPQGMHIKLM 156
Query: 246 GRLIQSLFP-------QSPEFRGRRVVTFHNQRDFIFFRHH--RCVPLEFISCYMWTILC 296
+ Q+LFP + ++ ++ + FRH+ + VP+ S M +L
Sbjct: 157 ATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPV-GASRGMKKLLQ 215
Query: 297 SYLTSIMKAFCYYECRYIFETKESKGSDANGK-------KAKDAKSEKTSQQKVITRLQE 349
++ + E + +G+ +A + +QQ + RL E
Sbjct: 216 EKFPNMSRLQDISELLATGVGLSDSEVEPDGEHNTTELPQAVAGRGNMQAQQSAV-RLTE 274
Query: 350 CGPRFTLKLVSLQHGTFDTKGGEFEWVHKPE 380
GPR TL+L+ +Q G + +VHK E
Sbjct: 275 IGPRMTLQLIKIQEGVGNGNVLFHSFVHKTE 305
>sp|A2R7P5|NST1_ASPNC Stress response protein nst1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=nst1 PE=3 SV=1
Length = 1201
Score = 33.1 bits (74), Expect = 4.1, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 19/91 (20%)
Query: 3 AKRKKSEGEELLNEGEKENDKNNENISKKMKKEILPSMIKNKEKRSAVHAKLKHQKKVEK 62
A+RK E E L E EK+ K++++E +E+++ + K + QK++EK
Sbjct: 607 AERKAQEAERLRKEAEKQ---------KRLREE--------RERQAEIERKQREQKELEK 649
Query: 63 RKKLKAR--DAAEKRALELGEEPPARMTPRT 91
+++ +AR + EK+ + E P+T
Sbjct: 650 KRREEARQNELREKKTKDERERKLREAAPKT 680
>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1
Length = 453
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 338 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 378
T ++K I +L E GPR TLKLV ++ G K E+V K
Sbjct: 320 TPRKKAI-KLTELGPRLTLKLVKIEEGICSGKVLHHEFVQK 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,615,907
Number of Sequences: 539616
Number of extensions: 6498407
Number of successful extensions: 30923
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 379
Number of HSP's that attempted gapping in prelim test: 28093
Number of HSP's gapped (non-prelim): 2278
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)