Query 016414
Match_columns 390
No_of_seqs 218 out of 785
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2780 Ribosome biogenesis pr 100.0 4.7E-90 1E-94 652.9 23.9 299 36-390 4-302 (302)
2 KOG2781 U3 small nucleolar rib 100.0 8.3E-68 1.8E-72 496.2 25.7 279 44-390 7-287 (290)
3 KOG2963 RNA-binding protein re 100.0 8.8E-43 1.9E-47 340.6 16.8 239 127-377 24-312 (405)
4 PF04427 Brix: Brix domain; I 100.0 2.7E-40 5.8E-45 302.4 8.5 147 133-279 1-159 (191)
5 smart00879 Brix Brix domain. T 100.0 1.6E-36 3.6E-41 273.2 18.6 148 132-279 1-158 (180)
6 COG2136 IMP4 Predicted exosome 100.0 5.6E-36 1.2E-40 277.0 16.4 181 129-366 2-189 (191)
7 KOG2971 RNA-binding protein re 100.0 2.9E-34 6.4E-39 271.0 14.4 195 128-384 49-254 (299)
8 COG5154 BRX1 RNA-binding prote 100.0 1.3E-30 2.8E-35 241.1 15.4 200 127-382 29-238 (283)
9 PRK03972 ribosomal biogenesis 100.0 9.1E-30 2E-34 237.5 14.3 125 131-255 2-132 (208)
10 PRK00933 ribosomal biogenesis 99.3 2.2E-11 4.7E-16 111.1 11.6 112 131-251 1-112 (165)
11 KOG3031 Protein required for b 98.7 1.2E-07 2.7E-12 92.1 9.8 141 141-281 40-198 (307)
12 COG5106 RPF2 Uncharacterized c 96.5 0.004 8.8E-08 60.2 5.3 108 172-279 77-203 (316)
13 PRK03972 ribosomal biogenesis 95.6 0.066 1.4E-06 51.0 8.7 76 131-211 107-188 (208)
14 PF05508 Ran-binding: RanGTP-b 66.9 3 6.6E-05 41.9 1.5 41 347-387 186-228 (302)
15 cd00860 ThrRS_anticodon ThrRS 60.7 25 0.00053 27.4 5.5 77 130-207 3-80 (91)
16 PF04921 XAP5: XAP5, circadian 56.4 14 0.00031 36.0 4.0 78 118-212 102-186 (239)
17 cd00861 ProRS_anticodon_short 51.8 33 0.00072 27.0 4.9 66 143-209 20-85 (94)
18 cd00858 GlyRS_anticodon GlyRS 44.7 76 0.0017 26.9 6.3 79 128-208 26-107 (121)
19 cd00859 HisRS_anticodon HisRS 40.9 65 0.0014 24.4 4.9 77 129-207 2-80 (91)
20 PF12745 HGTP_anticodon2: Anti 40.6 99 0.0021 30.7 7.2 78 127-204 4-89 (273)
21 PF03129 HGTP_anticodon: Antic 34.2 67 0.0015 25.4 4.1 82 131-212 2-86 (94)
22 PF08572 PRP3: pre-mRNA proces 32.4 73 0.0016 30.8 4.7 44 55-100 143-188 (223)
23 cd03409 Chelatase_Class_II Cla 31.6 2.1E+02 0.0047 22.6 6.8 44 142-185 18-65 (101)
24 cd08599 PI-PLCc_plant Catalyti 30.7 67 0.0014 31.2 4.1 80 171-254 35-116 (228)
25 cd00738 HGTP_anticodon HGTP an 29.7 2.3E+02 0.0051 21.8 6.5 44 164-207 40-83 (94)
26 PF09805 Nop25: Nucleolar prot 24.5 1.5E+02 0.0033 26.3 5.0 41 35-75 22-63 (137)
27 KOG3112 Uncharacterized conser 23.9 67 0.0014 31.2 2.7 41 167-209 102-142 (262)
28 cd02974 AhpF_NTD_N Alkyl hydro 23.8 2.7E+02 0.0058 23.1 6.0 73 118-203 9-83 (94)
29 KOG4709 Uncharacterized conser 23.4 1.1E+02 0.0023 29.4 3.9 33 40-72 44-76 (217)
30 COG0124 HisS Histidyl-tRNA syn 23.2 2.2E+02 0.0049 30.1 6.7 77 126-203 333-410 (429)
31 PF10673 DUF2487: Protein of u 22.8 1.6E+02 0.0034 26.6 4.8 38 153-190 54-96 (142)
32 cd08598 PI-PLC1c_yeast Catalyt 21.4 2E+02 0.0044 28.0 5.5 85 165-254 30-116 (231)
33 CHL00201 syh histidine-tRNA sy 20.1 1.8E+02 0.0039 30.4 5.3 84 128-212 325-409 (430)
No 1
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=100.00 E-value=4.7e-90 Score=652.87 Aligned_cols=299 Identities=56% Similarity=0.876 Sum_probs=290.6
Q ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhhhccccCCCcCCCCchhhhCCCC
Q 016414 36 ILPSMIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGND 115 (390)
Q Consensus 36 ~~~~~i~nk~~r~~~~~~~~~~k~~~k~~~~~~r~~~~~~~~~~~~~~~~~~~P~tie~~r~~d~~~~~~~d~e~~~~~~ 115 (390)
....+|+||.+|++.|.+.+++|.+++.+.|+++.+++.+.+|+|+.+|+++||+||||+|+||+|+++++|+|+++|++
T Consensus 4 ~~~~~~~n~~~~~~~~~~~k~~k~~~~~~~rk~k~~~~~~~~el~~~~~~~~vp~TIe~~R~yDeT~v~~~deEl~~d~~ 83 (302)
T KOG2780|consen 4 GNDIKIKNKDKRQKSYMKNKHQKNLEKLKMRKEKAKEKRELPELGELRPQKNVPKTIESTRVYDETIVEEEDEELQADLA 83 (302)
T ss_pred cccccccccccchHHHhhhHHHhhhHHHHHHHHHHHHhhhchhhhhccCccCCcchhhhhhhccccccCCCcHHHhhhhh
Confidence 45678999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCCCCeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceE
Q 016414 116 ADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDAL 195 (390)
Q Consensus 116 ~DEf~~~~~~~~~PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L 195 (390)
+|||+.||+.+..|||||||+.+|+.++..||.+|..|||||++..|+++.++.|+++|..++||++|||+|+++.|++|
T Consensus 84 ~deF~~~~~~~~spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L 163 (302)
T KOG2780|consen 84 DDEFSPYFRREFSPKVLITTSKNPKRTTYKFASELLDIIPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGL 163 (302)
T ss_pred hhhhHHHHhcccCccEEEEcCCCCcccHHHHHHHHHHhCCCceEEecCCchHHHHHHHHHHhcCCceEEEecCcCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCceEEEEEeceeehhhhccCCCCCCCCCeEEecCCCcchhHHHHHHHHhhCCCCCCCCCCeEEEEEecCCEEE
Q 016414 196 LIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIF 275 (390)
Q Consensus 196 ~I~~lP~GPT~~FkI~nv~l~kdI~~~g~~~~~~P~LIlnnF~t~lg~~i~~mfq~LFP~~p~~~~RRVVtF~nq~d~I~ 275 (390)
.|+|||+|||+||+++||.+.+||..+|++++|.|+||+|||+|++|+.|++||++|||+.|+|+|||||+||||+||||
T Consensus 164 ~iihlP~GPT~~Fkls~~~~~kdi~k~g~~t~h~PElIlNNFtTrlG~~v~r~f~sLfp~~p~f~gRrvvtFhnQrD~If 243 (302)
T KOG2780|consen 164 KIIHLPNGPTAYFKLSNVVLTKDIKKHGRPTSHIPELILNNFTTRLGMTVGRLFASLFPHDPQFTGRRVVTFHNQRDYIF 243 (302)
T ss_pred EEEecCCCCceEEEeecccchhhhhhcCCcccccchhhhhcccchhhHHHHHHHHHhCCCCccccceeEEEEEecCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCccchhhhhhhhhhhhhhhhhhhhhhhccccceeeecccCCCCCcCCccccccchhhhhhhhhcccceeccccee
Q 016414 276 FRHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFT 355 (390)
Q Consensus 276 FRHy~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~rY~f~~~~~~~~~~~~~~v~~a~~~~~~~~~~~v~LqEIGPRft 355 (390)
|||| ||+|.+++.+ |+|||||||||
T Consensus 244 FRhh--------------------------------RY~Fkee~~k-----------------------vglqElGPrfT 268 (302)
T KOG2780|consen 244 FRHH--------------------------------RYEFKEEEIK-----------------------VGLQELGPRFT 268 (302)
T ss_pred EEEE--------------------------------EEeecccccc-----------------------cchhhcCCcee
Confidence 9999 9999865432 79999999999
Q ss_pred eEEeeeecccCCCCCCceEEEeCCCCCccccccCC
Q 016414 356 LKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390 (390)
Q Consensus 356 LkL~kI~~G~fd~~~Ge~ew~~k~~~~~~r~~f~l 390 (390)
|+|+++|+|+||.+.||++|++++ |+++||+|||
T Consensus 269 LrL~~lq~G~fd~K~ge~~~~~~~-~~tsrr~f~L 302 (302)
T KOG2780|consen 269 LRLRRLQKGTFDEKEGEFEWVHKK-METSRRKFFL 302 (302)
T ss_pred eeehhhhhccccccceeeeeeecc-cccchhcccC
Confidence 999999999999999999999999 9999999998
No 2
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=100.00 E-value=8.3e-68 Score=496.24 Aligned_cols=279 Identities=36% Similarity=0.604 Sum_probs=240.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhhhc--cccCCCcCCCCchhhhCCCCchhhhh
Q 016414 44 KEKRSAVHAKLKHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPRTIENT--REPDETVCRPDDDELFAGNDADEFSS 121 (390)
Q Consensus 44 k~~r~~~~~~~~~~k~~~k~~~~~~r~~~~~~~~~~~~~~~~~~~P~tie~~--r~~d~~~~~~~d~e~~~~~~~DEf~~ 121 (390)
++||+++|+|....+.+...+ +++..+++++.+ +.+|+.|... --.|+-..++...|...-..+|||+
T Consensus 7 R~RREylyrK~~E~~~k~~~e----kk~~lr~ALe~n-----k~ip~elrkda~~l~d~~~~ed~~~~~~~~~vddEy~- 76 (290)
T KOG2781|consen 7 RERREYLYRKALEEQDKSLQE----KKRRLREALEEN-----KKIPKELRKDALLLKDEIYYEDEGGEADDSHVDDEYR- 76 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcC-----CCCChHHHHhHHHhhhhhhccccccccccccccHHHH-
Confidence 799999999997766554433 233556778876 8899988764 2223322211111111123468996
Q ss_pred hhhcCCCCeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCC
Q 016414 122 ILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLP 201 (390)
Q Consensus 122 ~~~~~~~PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP 201 (390)
++|..+|||||||||+||+++.+|+++|+.+|||+..++||++.+.++++.|..+|+|++|||||++|.|.+|.|||||
T Consensus 77 -~ag~~dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlP 155 (290)
T KOG2781|consen 77 -WAGEEDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQRLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLP 155 (290)
T ss_pred -hccCCCCcEEEEeCCCchHHHHHHHHhheEeccChhhhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeceeehhhhccCCCCCCCCCeEEecCCCcchhHHHHHHHHhhCCCCCCCCCCeEEEEEecCCEEEEEeecC
Q 016414 202 DGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRC 281 (390)
Q Consensus 202 ~GPT~~FkI~nv~l~kdI~~~g~~~~~~P~LIlnnF~t~lg~~i~~mfq~LFP~~p~~~~RRVVtF~nq~d~I~FRHy~i 281 (390)
.|||++|+|.||.+++||++.|.++..+|+||||||+|.+|++++.+|..||| .|+..++|||||.|++|+|.||||
T Consensus 156 fGPTa~Fsl~nvVmRhdip~~G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP-~pk~ds~Rvvtf~N~~DyIsFRhh-- 232 (290)
T KOG2781|consen 156 FGPTAFFSLHNVVMRHDIPDIGTMSEQKPHLIFDNFTTKLGKRVKTILKHLFP-VPKDDSKRVVTFANRNDYISFRHH-- 232 (290)
T ss_pred CCCceEeeeeeeeecccccccccccccCceEEeccccchHHHHHHHHHHHhCC-CCcCCcccEEEEecCCceEEEEEE--
Confidence 99999999999999999999999999999999999999999999999999999 588899999999999999999999
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhccccceeeecccCCCCCcCCccccccchhhhhhhhhcccceecccceeeEEeee
Q 016414 282 VPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 361 (390)
Q Consensus 282 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~rY~f~~~~~~~~~~~~~~v~~a~~~~~~~~~~~v~LqEIGPRftLkL~kI 361 (390)
.|.-.+. +. |.|.|+||||.|+|+.|
T Consensus 233 ------------------------------vy~~~~~--k~----------------------vel~evGPRfelklyeI 258 (290)
T KOG2781|consen 233 ------------------------------VYKKTDG--KE----------------------VELTEVGPRFELKLYEI 258 (290)
T ss_pred ------------------------------EEecCCC--ce----------------------EEEeeccccceeeeeee
Confidence 6653221 11 68999999999999999
Q ss_pred ecccCCCCCCceEEEeCCCCCccccccCC
Q 016414 362 QHGTFDTKGGEFEWVHKPEMDTSRRRFFL 390 (390)
Q Consensus 362 ~~G~fd~~~Ge~ew~~k~~~~~~r~~f~l 390 (390)
..||++.+.+++||+++|||+|+|+|-||
T Consensus 259 rlGTlE~~~ad~EW~~rpY~nTa~kR~~l 287 (290)
T KOG2781|consen 259 RLGTLEIKDADVEWVLRPYMNTARKRDFL 287 (290)
T ss_pred eecceeccccceeEEecchhcchhhhhhh
Confidence 99999999999999999999999988665
No 3
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-43 Score=340.57 Aligned_cols=239 Identities=21% Similarity=0.281 Sum_probs=190.9
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHhcC-Ccch--hcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCC
Q 016414 127 CAPKILITTCRFNSNRGPAFISELLSVI-PNSH--YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG 203 (390)
Q Consensus 127 ~~PKiLITTSr~pS~r~r~F~kdL~~i~-PnS~--~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~G 203 (390)
..|.+++.++.-....+.+|..||+.|+ ||+. ...|+.++|||++..|..+|+||++|++....+ .+|.|+++|.|
T Consensus 24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~n-lslki~R~PqG 102 (405)
T KOG2963|consen 24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTETN-LSLKIARTPQG 102 (405)
T ss_pred cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccCc-eeEEEEecCCC
Confidence 4689999999999999999999999999 9976 456789999999999999999999999999884 79999999999
Q ss_pred ceEEEEEeceeehhhhccCC---CC----CCCCCeEEecCCCc---chhHHHHHHHHhhCCCCCC-----CCCCeEEEEE
Q 016414 204 PTAHFKLSKLVLRKDIKNHG---NP----TGHIPELVLNNFAT---RLGHRVGRLIQSLFPQSPE-----FRGRRVVTFH 268 (390)
Q Consensus 204 PT~~FkI~nv~l~kdI~~~g---~~----~~~~P~LIlnnF~t---~lg~~i~~mfq~LFP~~p~-----~~~RRVVtF~ 268 (390)
||++|+|+.|+|.+|+.... .+ +.|+|+||||||++ .+-++|++|||+|||+|+- .+++||++|+
T Consensus 103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllin 182 (405)
T KOG2963|consen 103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLIN 182 (405)
T ss_pred CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEe
Confidence 99999999999999998754 22 47999999999995 4677999999999999873 4799999999
Q ss_pred e--cCCEEEEEeecCccchhhhhhhhhhhhhhhhhhhhhhh-----c------cccceeeec----ccCCCCCcCCcccc
Q 016414 269 N--QRDFIFFRHHRCVPLEFISCYMWTILCSYLTSIMKAFC-----Y------YECRYIFET----KESKGSDANGKKAK 331 (390)
Q Consensus 269 n--q~d~I~FRHy~i~~~~~i~~~~~~~~~~~~~~~~~~~~-----~------~~~rY~f~~----~~~~~~~~~~~~v~ 331 (390)
+ +++.|.||||+|. .+|+|+++++++|+++-. . +.|.|+... ++++.+++..-.|.
T Consensus 183 yn~dt~eIdmRHysI~-------vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~ 255 (405)
T KOG2963|consen 183 YNRDTGEIDMRHYSIR-------VVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIV 255 (405)
T ss_pred cCCCCCeeeeeeeEEE-------EEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEe
Confidence 6 5679999999884 589999999999999743 1 113332211 12222111111121
Q ss_pred ----------ccc-----hhhhhhhhhcccceecccceeeEEeeeecccCCCCCCceEEEe
Q 016414 332 ----------DAK-----SEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVH 377 (390)
Q Consensus 332 ----------~a~-----~~~~~~~~~~v~LqEIGPRftLkL~kI~~G~fd~~~Ge~ew~~ 377 (390)
+++ |... -.+++|+|+||||||||+|+||++|+| +|+|.|..
T Consensus 256 ~~~~~~~eveL~q~~~s~g~~~-~qksaikL~EIGPRlTlqLvKIeEGi~---~GkVlyH~ 312 (405)
T KOG2963|consen 256 DNQDVKEEVELPQPKASRGNQP-PQKSAIKLTEIGPRLTLQLVKIEEGIC---EGKVLYHE 312 (405)
T ss_pred ccccchhhhhccccccccCCCc-ccccceeeEeecccceEEEEEeecccc---ccceEEee
Confidence 221 2211 224559999999999999999999999 79998864
No 4
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=2.7e-40 Score=302.36 Aligned_cols=147 Identities=41% Similarity=0.633 Sum_probs=80.9
Q ss_pred EEeCCCCCCcHHHHHHHHHhcC-Ccchhcccccc-cHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEEEEE
Q 016414 133 ITTCRFNSNRGPAFISELLSVI-PNSHYYKRGTY-DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL 210 (390)
Q Consensus 133 ITTSr~pS~r~r~F~kdL~~i~-PnS~~~~R~k~-~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~FkI 210 (390)
||||++||.++++|++||+.+| |||.+++|++. .+++++++|..++|+++++|++++++|++|||+++|+|||++|+|
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I 80 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSI 80 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEE
Confidence 7999999999999999999999 99999999988 999999999999999999999999999999999999999999999
Q ss_pred eceeehhhhccCCC-CCCCCCeEEecCCCcch---hHHHHHHHHhhCCCCC-----CCCCCeEEEEEecCCE-EEEEee
Q 016414 211 SKLVLRKDIKNHGN-PTGHIPELVLNNFATRL---GHRVGRLIQSLFPQSP-----EFRGRRVVTFHNQRDF-IFFRHH 279 (390)
Q Consensus 211 ~nv~l~kdI~~~g~-~~~~~P~LIlnnF~t~l---g~~i~~mfq~LFP~~p-----~~~~RRVVtF~nq~d~-I~FRHy 279 (390)
.||++++|+++... +.+++|+|||+||.++. +++++.||++|||... ...++||++|++++|. ||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~Y 159 (191)
T PF04427_consen 81 ENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRHY 159 (191)
T ss_dssp EEEE-HHHHT-------S---EEEEE-----------------------------------------------------
T ss_pred EeEEEhhHhcccccCCCCCCeEEEEEecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999987653 45889999999998765 9999999999999852 3579999999999998 999999
No 5
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=100.00 E-value=1.6e-36 Score=273.23 Aligned_cols=148 Identities=45% Similarity=0.705 Sum_probs=136.9
Q ss_pred EEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEec--CCCCceEEEeeCCCCceEEEE
Q 016414 132 LITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN--RREPDALLIIGLPDGPTAHFK 209 (390)
Q Consensus 132 LITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~--r~~p~~L~I~~lP~GPT~~Fk 209 (390)
|||||++||.++++|++||+.++|++.++.|+++.+.+++++|...+.+++|++.|. +|+|++|||+++|+|||++|.
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~ 80 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFK 80 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEE
Confidence 699999999999999999999999999999999999999999999977777777777 899999999999999999999
Q ss_pred Eeceeehhhhcc--CCC-CCCCCCeEEecCCCcchhHHHHHHHHhhCCCCCCC-----CCCeEEEEEecCCEEEEEee
Q 016414 210 LSKLVLRKDIKN--HGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEF-----RGRRVVTFHNQRDFIFFRHH 279 (390)
Q Consensus 210 I~nv~l~kdI~~--~g~-~~~~~P~LIlnnF~t~lg~~i~~mfq~LFP~~p~~-----~~RRVVtF~nq~d~I~FRHy 279 (390)
|.+|.+.+|+.+ .++ ...++|+||||||.+.+|++++.||+.|||..+.. .++|||+|++++|.|+||||
T Consensus 81 i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y 158 (180)
T smart00879 81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHY 158 (180)
T ss_pred EECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEE
Confidence 999999999987 334 35789999999999999999999999999987654 57999999999999999999
No 6
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=100.00 E-value=5.6e-36 Score=277.03 Aligned_cols=181 Identities=37% Similarity=0.579 Sum_probs=172.6
Q ss_pred CeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeC-CCCceEE
Q 016414 129 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL-PDGPTAH 207 (390)
Q Consensus 129 PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~l-P~GPT~~ 207 (390)
||+||||||+||.++++|+++|..+|||+.+..||++++.++.+.|...|+++++||+|++|+|..|.++|+ |+||+++
T Consensus 2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~~ 81 (191)
T COG2136 2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTFS 81 (191)
T ss_pred CcEEEEecCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEeceeehhhhccCCC-CCCCCCeEEecCCCcchh-HHHHHHHHhh----CCCCCCCCCCeEEEEEecCCEEEEEeecC
Q 016414 208 FKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLG-HRVGRLIQSL----FPQSPEFRGRRVVTFHNQRDFIFFRHHRC 281 (390)
Q Consensus 208 FkI~nv~l~kdI~~~g~-~~~~~P~LIlnnF~t~lg-~~i~~mfq~L----FP~~p~~~~RRVVtF~nq~d~I~FRHy~i 281 (390)
|+|+|+++.+++.+++. ...|.|++|+|||.+.+| +.++++|+.+ |++.+.....+|++++++.++++||+|
T Consensus 82 f~l~~v~l~re~~~~~~~~~~~~~~~I~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~v~~~~~~~~f~~~~~~-- 159 (191)
T COG2136 82 FKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRH-- 159 (191)
T ss_pred EEEecceEEEeccccCCcccCCCCceeeecccccccchhhHHHHHhhcccccccCcccceeeeeeccccceEEEEEee--
Confidence 99999999999999987 678999999999999999 8999999999 999888889999999999999999999
Q ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhccccceeeecccCCCCCcCCccccccchhhhhhhhhcccceecccceeeEEeee
Q 016414 282 VPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 361 (390)
Q Consensus 282 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~rY~f~~~~~~~~~~~~~~v~~a~~~~~~~~~~~v~LqEIGPRftLkL~kI 361 (390)
.|++.. + .++++|+||||+|+|..+
T Consensus 160 ------------------------------~~~~~~-~------------------------~~~~~~vgp~~~~r~~~~ 184 (191)
T COG2136 160 ------------------------------RRVFEE-D------------------------GIGLEEVGPRLTLRLWRM 184 (191)
T ss_pred ------------------------------eeEeee-e------------------------eeeEEEeCceeeeehhhh
Confidence 898864 1 169999999999999999
Q ss_pred ecccC
Q 016414 362 QHGTF 366 (390)
Q Consensus 362 ~~G~f 366 (390)
+.|+.
T Consensus 185 ~~g~~ 189 (191)
T COG2136 185 EDGRG 189 (191)
T ss_pred hhccc
Confidence 99965
No 7
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-34 Score=271.04 Aligned_cols=195 Identities=24% Similarity=0.372 Sum_probs=174.7
Q ss_pred CCeEEEEeCCCCCCcHHHHHHHHHhcCCcchhccc--ccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCce
Q 016414 128 APKILITTCRFNSNRGPAFISELLSVIPNSHYYKR--GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 205 (390)
Q Consensus 128 ~PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R--~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT 205 (390)
..+|||++||+.+-++|+||+||..++||+....+ .+..+..|.++|...+|+.+++|..++....|||++.+|+|||
T Consensus 49 K~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpS 128 (299)
T KOG2971|consen 49 KERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPS 128 (299)
T ss_pred ceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCc
Confidence 77999999999999999999999999999987765 4778999999999999999999999999999999999999999
Q ss_pred EEEEEeceeehhhhccCCCCC-CCCCeEEec-CCC-cchhHHHHHHHHhhCCCCCC------CCCCeEEEEEecCCEEEE
Q 016414 206 AHFKLSKLVLRKDIKNHGNPT-GHIPELVLN-NFA-TRLGHRVGRLIQSLFPQSPE------FRGRRVVTFHNQRDFIFF 276 (390)
Q Consensus 206 ~~FkI~nv~l~kdI~~~g~~~-~~~P~LIln-nF~-t~lg~~i~~mfq~LFP~~p~------~~~RRVVtF~nq~d~I~F 276 (390)
+.|.|+|++++.|++..|||. +++|+|.|+ +|. .|+-+++..||.+.|.. |. ....+|++|+.-+|.|||
T Consensus 129 vkFlv~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgi-P~~hrkSkpf~Dhvf~Fsi~D~~IWf 207 (299)
T KOG2971|consen 129 VKFLVHNVHTMAELKMTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGI-PKHHRKSKPFVDHVFTFSILDGKIWF 207 (299)
T ss_pred eEEehhhhhhHHHhCCccccccCCcceeecccccccchHHHHHHHHHHHHcCC-CCCCcccCCccceEEEEEEecCeEEE
Confidence 999999999999999999995 689999998 798 47888999999999975 42 135799999999999999
Q ss_pred EeecCccchhhhhhhhhhhhhhhhhhhhhhhccccceeeecccCCCCCcCCccccccchhhhhhhhhcccceecccceee
Q 016414 277 RHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 356 (390)
Q Consensus 277 RHy~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~rY~f~~~~~~~~~~~~~~v~~a~~~~~~~~~~~v~LqEIGPRftL 356 (390)
|.|+|. ..+. +.|+||||||+|
T Consensus 208 RnyqI~----------------------------------~~ed------------------------~~L~EiGPRfvl 229 (299)
T KOG2971|consen 208 RNYQIS----------------------------------EEED------------------------KTLIEIGPRFVL 229 (299)
T ss_pred EEeEec----------------------------------cccC------------------------cceeeeccHHHH
Confidence 999652 1111 489999999999
Q ss_pred EEeeeecccCCCCCCceEEEeCCCCCcc
Q 016414 357 KLVSLQHGTFDTKGGEFEWVHKPEMDTS 384 (390)
Q Consensus 357 kL~kI~~G~fd~~~Ge~ew~~k~~~~~~ 384 (390)
.+++|.+|.| +|..+|.+..|...+
T Consensus 230 ~~ikif~gsF---gG~~lYenp~yvspn 254 (299)
T KOG2971|consen 230 NVIKIFEGSF---GGPTLYENPKYVSPN 254 (299)
T ss_pred hHHHHHhccC---CCceeecCccccCHH
Confidence 9999999999 799999998775544
No 8
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.3e-30 Score=241.15 Aligned_cols=200 Identities=22% Similarity=0.338 Sum_probs=174.5
Q ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccc--cccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCc
Q 016414 127 CAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRG--TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 204 (390)
Q Consensus 127 ~~PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~--k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GP 204 (390)
.++++||.+||+.+-+.|+|++||..++|+|....+. +..+.++.++|...+|+++++|..++....+||+++.|+||
T Consensus 29 ~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGp 108 (283)
T COG5154 29 PKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGP 108 (283)
T ss_pred ccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCCC
Confidence 3789999999999999999999999999999877764 77899999999999999999999999999999999999999
Q ss_pred eEEEEEeceeehhhhccCCCCC-CCCCeEEecC-CC-cchhHHHHHHHHhhCCCCCC-----CCCCeEEEEEecCCEEEE
Q 016414 205 TAHFKLSKLVLRKDIKNHGNPT-GHIPELVLNN-FA-TRLGHRVGRLIQSLFPQSPE-----FRGRRVVTFHNQRDFIFF 276 (390)
Q Consensus 205 T~~FkI~nv~l~kdI~~~g~~~-~~~P~LIlnn-F~-t~lg~~i~~mfq~LFP~~p~-----~~~RRVVtF~nq~d~I~F 276 (390)
|+.|+|+|++++.|+...||+. +++|.|.|+- |. .||-+.+..++++.|...|. ....+|++|..-+|.|||
T Consensus 109 tvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~DgkIWv 188 (283)
T COG5154 109 TVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWV 188 (283)
T ss_pred eEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEEecCeEEE
Confidence 9999999999999999999985 6899999985 97 47888999999999976332 246899999999999999
Q ss_pred EeecCccchhhhhhhhhhhhhhhhhhhhhhhccccceeeecccCCCCCcCCccccccchhhhhhhhhcccceecccceee
Q 016414 277 RHHRCVPLEFISCYMWTILCSYLTSIMKAFCYYECRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 356 (390)
Q Consensus 277 RHy~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~rY~f~~~~~~~~~~~~~~v~~a~~~~~~~~~~~v~LqEIGPRftL 356 (390)
|.|.|.. .| ++++ ++ |+|.||||||.|
T Consensus 189 R~YeI~r----------------------------e~--ed~~---------------------~d--v~L~EIGPRfVm 215 (283)
T COG5154 189 RCYEIGR----------------------------EN--EDKS---------------------KD--VKLEEIGPRFVM 215 (283)
T ss_pred EEEeecc----------------------------cc--cccc---------------------cc--ceeeeeccHHHH
Confidence 9995521 11 1111 01 799999999999
Q ss_pred EEeeeecccCCCCCCceEEEeCCCCC
Q 016414 357 KLVSLQHGTFDTKGGEFEWVHKPEMD 382 (390)
Q Consensus 357 kL~kI~~G~fd~~~Ge~ew~~k~~~~ 382 (390)
..++|-+|.| +|...|.+..+..
T Consensus 216 tvi~iLEgsF---gGp~iYkn~~~vs 238 (283)
T COG5154 216 TVIKILEGSF---GGPAIYKNETFVS 238 (283)
T ss_pred HHHHHHHhcc---CCceeeecccccc
Confidence 9999999999 7999998886643
No 9
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.96 E-value=9.1e-30 Score=237.51 Aligned_cols=125 Identities=20% Similarity=0.343 Sum_probs=117.8
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCC---CceEE
Q 016414 131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPD---GPTAH 207 (390)
Q Consensus 131 iLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~---GPT~~ 207 (390)
||||||++||+++++|++||..+||||.+++||+++|++|++.|..+|||+||||+|++|+|++|.|+|||. |||++
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~ 81 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGY 81 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999985 55999
Q ss_pred EEEeceeehhhh--ccCCCCCCCCCeEEecCCCcchhH-HHHHHHHhhCCC
Q 016414 208 FKLSKLVLRKDI--KNHGNPTGHIPELVLNNFATRLGH-RVGRLIQSLFPQ 255 (390)
Q Consensus 208 FkI~nv~l~kdI--~~~g~~~~~~P~LIlnnF~t~lg~-~i~~mfq~LFP~ 255 (390)
|+|+||.+.+|| ++++.++.|.|+||.+||.+.+|+ ..|..+++.+.-
T Consensus 82 FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~kt~~g~~~~Ak~lA~eLgi 132 (208)
T PRK03972 82 LYLHGIKLQREMGFRNLRPIREDMPLVITTAKRVGLDHMAFAQVFAELTGG 132 (208)
T ss_pred EEEccEEEHHHcccCCCCCccccccEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999 568888999999999999999987 677788887765
No 10
>PRK00933 ribosomal biogenesis protein; Validated
Probab=99.30 E-value=2.2e-11 Score=111.08 Aligned_cols=112 Identities=21% Similarity=0.422 Sum_probs=86.0
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEEEEE
Q 016414 131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL 210 (390)
Q Consensus 131 iLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~FkI 210 (390)
++||||++||.++++|+++|...+ |+.|++|++.++++|++.|.. .+++||+|++++|++|.|+.+-..+.+.+.|
T Consensus 1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~ 76 (165)
T PRK00933 1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSYRL 76 (165)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHh-CCEEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEEEE
Confidence 489999999999999999999999 999999999999999987664 4999999999999999999998788877765
Q ss_pred eceeehhhhccCCCCCCCCCeEEecCCCcchhHHHHHHHHh
Q 016414 211 SKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQS 251 (390)
Q Consensus 211 ~nv~l~kdI~~~g~~~~~~P~LIlnnF~t~lg~~i~~mfq~ 251 (390)
++.+..++.+. ......| +.+++... +.-++.+|..
T Consensus 77 -~v~~~~~~~~~-~~~~~~p--~~~~~~~~-~~~~~e~f~~ 112 (165)
T PRK00933 77 -SVKLQREISGP-VFKNRRP--IKSAFDVG-GDELAELFDY 112 (165)
T ss_pred -EeeeecccCcc-eeecCCC--cccchhhH-HHHHHHHHHH
Confidence 46776666421 1223334 33333322 4455555554
No 11
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.2e-07 Score=92.14 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=106.0
Q ss_pred CcHHHHHHHHHhc-CCcchhccccccc-----HHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCce---EEEEEe
Q 016414 141 NRGPAFISELLSV-IPNSHYYKRGTYD-----LKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT---AHFKLS 211 (390)
Q Consensus 141 ~r~r~F~kdL~~i-~PnS~~~~R~k~~-----Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT---~~FkI~ 211 (390)
..+..-|.||-.+ .|.+..+.|++.. -.-+..+...++|+-+++-+-+++.|++|+|.+.=++-- +-+.|.
T Consensus 40 ~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~ 119 (307)
T KOG3031|consen 40 KTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIELGIE 119 (307)
T ss_pred hHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHHhhh
Confidence 4556667777666 4888777776321 234566777888888888888899999999987765533 668899
Q ss_pred ceeehhhhccCCCCCCCCCeEEecCCC---cchhHHHHHHHHhhCCCCCC----CC-CCeEEEEEecCCE-EEEEeecC
Q 016414 212 KLVLRKDIKNHGNPTGHIPELVLNNFA---TRLGHRVGRLIQSLFPQSPE----FR-GRRVVTFHNQRDF-IFFRHHRC 281 (390)
Q Consensus 212 nv~l~kdI~~~g~~~~~~P~LIlnnF~---t~lg~~i~~mfq~LFP~~p~----~~-~RRVVtF~nq~d~-I~FRHy~i 281 (390)
||...+|....+-..+..|.|+|+|+. ++.-+++..+|--.|--.+- .. -++|+.|...++. |+||||.+
T Consensus 120 ~ykslsdF~~~k~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~Y~l 198 (307)
T KOG3031|consen 120 NYKSLSDFKAAKITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRVYRL 198 (307)
T ss_pred hhhhhhhhhccCCCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeeeeee
Confidence 999999998766556789999999853 55567899999999876332 22 4799999987775 99999943
No 12
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.004 Score=60.17 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=73.9
Q ss_pred HHHHhCCCceEEEEEecCCCCceEEEeeCCCC---ceEEEEEeceeehhhhccCCCCCCCCCeEEecC--CC-cchhHHH
Q 016414 172 EYAKKKDFTSIIVVHTNRREPDALLIIGLPDG---PTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNN--FA-TRLGHRV 245 (390)
Q Consensus 172 ~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~G---PT~~FkI~nv~l~kdI~~~g~~~~~~P~LIlnn--F~-t~lg~~i 245 (390)
-+...+++.-.+++...++.+.+|+|.+.=+= -.+-|.|.+|....|....+......|.++|.| |+ .|.-++|
T Consensus 77 ffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~~~~g~Kpmv~fQg~~fd~hp~yr~i 156 (316)
T COG5106 77 FFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECAGPELGMKPMVVFQGINFDAHPTYRRI 156 (316)
T ss_pred HHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhccCCccCCceEEEEeccccccchHHHHH
Confidence 34456667777778788888889988664321 124567888888888877776667899999985 77 4667789
Q ss_pred HHHHHhhCCCCCC----C-CCCeEEEEEecC---C-----EEEEEee
Q 016414 246 GRLIQSLFPQSPE----F-RGRRVVTFHNQR---D-----FIFFRHH 279 (390)
Q Consensus 246 ~~mfq~LFP~~p~----~-~~RRVVtF~nq~---d-----~I~FRHy 279 (390)
..+|-..|--.+- . .-..|+.-..+. | .+.||-|
T Consensus 157 ksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVy 203 (316)
T COG5106 157 KSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVY 203 (316)
T ss_pred HHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeee
Confidence 9999999886542 1 123566555332 2 2468888
No 13
>PRK03972 ribosomal biogenesis protein; Validated
Probab=95.57 E-value=0.066 Score=50.98 Aligned_cols=76 Identities=24% Similarity=0.296 Sum_probs=58.2
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeC------CCCc
Q 016414 131 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL------PDGP 204 (390)
Q Consensus 131 iLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~l------P~GP 204 (390)
.+|||+.++...+...++.+...+ +..|++|++.++.+|. ...+..+++||.-+-.. ..+.++++ |-||
T Consensus 107 ~iItts~kt~~g~~~~Ak~lA~eL-gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~~-~~~~~~~~~~~~~~~~~~ 181 (208)
T PRK03972 107 LVITTAKRVGLDHMAFAQVFAELT-GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPRG-MAVNFYRLDVTKERPVGP 181 (208)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh-CCceeCcCCcCHHHHH---hhhcCceEEEEecCCCc-eEEEEEEeccccccccCC
Confidence 589999999998888899988776 7888999999999876 44556788888665332 24455553 7799
Q ss_pred eEEEEEe
Q 016414 205 TAHFKLS 211 (390)
Q Consensus 205 T~~FkI~ 211 (390)
.+++++-
T Consensus 182 ~~~~~~~ 188 (208)
T PRK03972 182 LIFVKIW 188 (208)
T ss_pred cEEEEEE
Confidence 9988864
No 14
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=66.86 E-value=3 Score=41.91 Aligned_cols=41 Identities=34% Similarity=0.369 Sum_probs=33.6
Q ss_pred ceecccceeeEEeeeecccCCCC--CCceEEEeCCCCCccccc
Q 016414 347 LQECGPRFTLKLVSLQHGTFDTK--GGEFEWVHKPEMDTSRRR 387 (390)
Q Consensus 347 LqEIGPRftLkL~kI~~G~fd~~--~Ge~ew~~k~~~~~~r~~ 387 (390)
-.-|||-|||.||.|..|--..+ .|...+.||-.|...|-+
T Consensus 186 ~~qvGP~F~lslY~lF~~~sr~~~~~~~~~~tWKE~~~ka~v~ 228 (302)
T PF05508_consen 186 PVQVGPTFTLSLYMLFYGHSRPKYEEGLRKITWKEVMHKARVR 228 (302)
T ss_pred ccccCCcEEEEeeheecccccccccccccCcceeeeccceEEE
Confidence 45699999999999999987654 588899999888777643
No 15
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=60.69 E-value=25 Score=27.41 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=51.1
Q ss_pred eEEEEeCCC-CCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEE
Q 016414 130 KILITTCRF-NSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 207 (390)
Q Consensus 130 KiLITTSr~-pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~ 207 (390)
.|+|+.... .-.....++..|+..==.+....+ ..++..-...|...|+..+|+|..+.-....+.+-.+..|-...
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~-~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~~ 80 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR-NEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS 80 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccce
Confidence 556665432 233566667777654112333334 46999999999999999999999876555677777777664433
No 16
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=56.36 E-value=14 Score=36.02 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=53.6
Q ss_pred hhhhhhhcCCCCeEEEEeCCCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEE
Q 016414 118 EFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 197 (390)
Q Consensus 118 Ef~~~~~~~~~PKiLITTSr~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I 197 (390)
-|+ ||.|..-|+. |+... ...+.+|+.-.+..+. +++-+++.. ++.+||+|-++-=.|....+
T Consensus 102 ~fs-ywDGs~hrr~-v~vKK--GdtI~~FL~~~r~~l~------------~~f~el~~v-svd~LM~VkedlIiPHhy~F 164 (239)
T PF04921_consen 102 PFS-YWDGSGHRRT-VRVKK--GDTIWQFLEKCRKQLA------------KEFRELRRV-SVDDLMYVKEDLIIPHHYTF 164 (239)
T ss_pred EEE-EECCCCCcce-EEEcC--CCCHHHHHHHHHHHHH------------HHhHHHHhc-CHhheeeeccceeccCCcee
Confidence 465 9999999993 33322 2346777777777664 445566554 88999999887666766666
Q ss_pred eeC-------CCCceEEEEEec
Q 016414 198 IGL-------PDGPTAHFKLSK 212 (390)
Q Consensus 198 ~~l-------P~GPT~~FkI~n 212 (390)
+.| +.||-+.|.+..
T Consensus 165 Y~fI~nka~GksGpLF~fd~~~ 186 (239)
T PF04921_consen 165 YDFIVNKARGKSGPLFDFDVHD 186 (239)
T ss_pred eeeeeccccCCCCCeeeccCCc
Confidence 443 778888888776
No 17
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=51.82 E-value=33 Score=27.01 Aligned_cols=66 Identities=14% Similarity=-0.000 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEEEE
Q 016414 143 GPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFK 209 (390)
Q Consensus 143 ~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~Fk 209 (390)
...++..|+..==......+. .+++.-+..|...|+..+|++.+..-....+.|-.+-.|-.....
T Consensus 20 a~~la~~Lr~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~~~~~~ 85 (94)
T cd00861 20 AEKLYAELQAAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGEKEEIS 85 (94)
T ss_pred HHHHHHHHHHCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCcceEEe
Confidence 445555555431122233343 488889999999999999999987644457778777777655443
No 18
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=44.66 E-value=76 Score=26.85 Aligned_cols=79 Identities=9% Similarity=-0.030 Sum_probs=51.7
Q ss_pred CCeEEEEeCC--CC-CCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCc
Q 016414 128 APKILITTCR--FN-SNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 204 (390)
Q Consensus 128 ~PKiLITTSr--~p-S~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GP 204 (390)
.+.|+|.... .. ......++..|+.-==.+....+ .+++.-...|...|+..+|+|.++.-....+.|..+..|-
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~--~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~~~~ 103 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS--GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRERDSMR 103 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC--CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEECCCCc
Confidence 5667777654 22 22445666666653001112233 6999999999999999999999876555677887777665
Q ss_pred eEEE
Q 016414 205 TAHF 208 (390)
Q Consensus 205 T~~F 208 (390)
....
T Consensus 104 ~~~v 107 (121)
T cd00858 104 QVRV 107 (121)
T ss_pred eEEE
Confidence 4443
No 19
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=40.89 E-value=65 Score=24.38 Aligned_cols=77 Identities=12% Similarity=0.157 Sum_probs=48.6
Q ss_pred CeEEEEeCCCC-CCcHHHHHHHHHhc-CCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceE
Q 016414 129 PKILITTCRFN-SNRGPAFISELLSV-IPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTA 206 (390)
Q Consensus 129 PKiLITTSr~p-S~r~r~F~kdL~~i-~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~ 206 (390)
+.|+|.+.... -.....++..|+.- + ....... ..++++...+|...|+..++++.+.......+.+..+..|...
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~-~v~~~~~-~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~ 79 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGI-KAEIDYG-GRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQE 79 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCC-EEEEecC-CCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcE
Confidence 35677765443 23466777888764 2 1222122 2368899999999999999999865333346777777666544
Q ss_pred E
Q 016414 207 H 207 (390)
Q Consensus 207 ~ 207 (390)
.
T Consensus 80 ~ 80 (91)
T cd00859 80 T 80 (91)
T ss_pred E
Confidence 3
No 20
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=40.60 E-value=99 Score=30.66 Aligned_cols=78 Identities=12% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCCeEEEEeCCCCCCcH--HHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecC-----C-CCceEEEe
Q 016414 127 CAPKILITTCRFNSNRG--PAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNR-----R-EPDALLII 198 (390)
Q Consensus 127 ~~PKiLITTSr~pS~r~--r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r-----~-~p~~L~I~ 198 (390)
....|||++-....-++ .+++.+|=.-==.+.+......++.|+++.|...|++.+|||.+.. + .-..|.|-
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK 83 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVK 83 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEe
Confidence 45788986554433212 2333333221112344455667999999999999999999999954 1 11126666
Q ss_pred eCCCCc
Q 016414 199 GLPDGP 204 (390)
Q Consensus 199 ~lP~GP 204 (390)
++-.+-
T Consensus 84 ~l~~~~ 89 (273)
T PF12745_consen 84 SLEKKK 89 (273)
T ss_pred ccCCCc
Confidence 665554
No 21
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=34.18 E-value=67 Score=25.42 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=57.3
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCCcch---hcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEE
Q 016414 131 ILITTCRFNSNRGPAFISELLSVIPNSH---YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 207 (390)
Q Consensus 131 iLITTSr~pS~r~r~F~kdL~~i~PnS~---~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~ 207 (390)
|.|.+-...+.....++.+|...+-+.- .+.-...++..=+..|...|+..+|++.+..-....+.|-.+-.|-..+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~ 81 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQET 81 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEEE
Confidence 3444433324466777788877775433 1222778899999999999999999999776444678888888886666
Q ss_pred EEEec
Q 016414 208 FKLSK 212 (390)
Q Consensus 208 FkI~n 212 (390)
.++..
T Consensus 82 v~~~e 86 (94)
T PF03129_consen 82 VSLEE 86 (94)
T ss_dssp EECCH
T ss_pred EEHHH
Confidence 65544
No 22
>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa [].
Probab=32.37 E-value=73 Score=30.77 Aligned_cols=44 Identities=25% Similarity=0.533 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCch-hhhh-ccccCC
Q 016414 55 KHQKKVEKRKKLKARDAAEKRALELGEEPPARMTPR-TIEN-TREPDE 100 (390)
Q Consensus 55 ~~~k~~~k~~~~~~r~~~~~~~~~~~~~~~~~~~P~-tie~-~r~~d~ 100 (390)
++++++-++.+|.++.++....+.+|-.+||. |+ .|-| +|++..
T Consensus 143 kkErKKlRr~rR~e~~kEkq~kIrlGL~ppP~--PKVKlSNLMrVL~~ 188 (223)
T PF08572_consen 143 KKERKKLRRQRRQEKQKEKQDKIRLGLEPPPP--PKVKLSNLMRVLGN 188 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CcccHHHHHHHhhc
Confidence 56666666777777777777778899887664 45 6777 577743
No 23
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=31.58 E-value=2.1e+02 Score=22.65 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=32.0
Q ss_pred cHHHHHHHHHhcCCcchh----cccccccHHHHHHHHHhCCCceEEEE
Q 016414 142 RGPAFISELLSVIPNSHY----YKRGTYDLKKIIEYAKKKDFTSIIVV 185 (390)
Q Consensus 142 r~r~F~kdL~~i~PnS~~----~~R~k~~Lkdiv~~A~~~g~T~lIv~ 185 (390)
.+..++..|...+|...+ ..+..-++.+.++.+...|+++++++
T Consensus 18 ~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvv 65 (101)
T cd03409 18 DIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIV 65 (101)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 456677777776764332 22335679999999999999999987
No 24
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=30.67 E-value=67 Score=31.22 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=48.2
Q ss_pred HHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEEEEEeceeehhhhccCCCCCCCCCeEE-e-cCCCcchhHHHHHH
Q 016414 171 IEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELV-L-NNFATRLGHRVGRL 248 (390)
Q Consensus 171 v~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~FkI~nv~l~kdI~~~g~~~~~~P~LI-l-nnF~t~lg~~i~~m 248 (390)
..-|-..||..|= +.-..|.....+|+| |-|++-.|.=-.-.+.|+..+..++++|+++ | |+++......|+.+
T Consensus 35 y~~aL~~GcRcvE-lD~Wdg~~~ep~V~H---G~t~ts~i~f~dvl~~I~~~aF~~s~yPvILslE~hcs~~qQ~~~a~~ 110 (228)
T cd08599 35 IIEALLRGCRVIE-LDLWPGGRGDICVLH---GGTLTKPVKFEDCIKAIKENAFTASEYPVIITLENHLSPELQAKAAQI 110 (228)
T ss_pred HHHHHHhCCCEEE-EEeecCCCCCeEEEe---CCCCcCCcCHHHHHHHHHHHhccCCCCCEEEEEecCCCHHHHHHHHHH
Confidence 4456678887653 334444334566666 6665544333233344555566678999544 4 46887777778887
Q ss_pred HHhhCC
Q 016414 249 IQSLFP 254 (390)
Q Consensus 249 fq~LFP 254 (390)
+...|.
T Consensus 111 l~~~lG 116 (228)
T cd08599 111 LRETLG 116 (228)
T ss_pred HHHHHh
Confidence 777665
No 25
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=29.68 E-value=2.3e+02 Score=21.81 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEE
Q 016414 164 TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 207 (390)
Q Consensus 164 k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~ 207 (390)
..+++.-...|...|+..+++|.+..-....+.|-.+-.|....
T Consensus 40 ~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~~~~ 83 (94)
T cd00738 40 ERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGESET 83 (94)
T ss_pred CcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCCceeE
Confidence 46899999999999999999999764334566676666554433
No 26
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=24.53 E-value=1.5e+02 Score=26.27 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=19.9
Q ss_pred cCCCccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016414 35 EILPSMIKNK-EKRSAVHAKLKHQKKVEKRKKLKARDAAEKR 75 (390)
Q Consensus 35 ~~~~~~i~nk-~~r~~~~~~~~~~k~~~k~~~~~~r~~~~~~ 75 (390)
..+...=|+| +||......++.+.+.++.+.|++.+.+.++
T Consensus 22 eyLTGFhKRK~~Rrk~Aqe~~~~k~r~er~eeRk~~R~erk~ 63 (137)
T PF09805_consen 22 EYLTGFHKRKKQRRKKAQEQAEEKEREERIEERKEIREERKE 63 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455455554 4455544555555554555555444443333
No 27
>KOG3112 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.90 E-value=67 Score=31.22 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEEEE
Q 016414 167 LKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFK 209 (390)
Q Consensus 167 Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~Fk 209 (390)
-++|++++...|+.++||++...+ .......+..||.+|.-
T Consensus 102 ~e~l~~~~kSSG~~~VIVLSss~~--~~~~~L~~srgP~~Y~l 142 (262)
T KOG3112|consen 102 QEELVELLKSSGARRVIVLSSSFG--FEKRVLEESRGPWAYRL 142 (262)
T ss_pred HHHHHHHHHhcCCceEEEEecchH--HHhhhhhhccCCeeEEc
Confidence 456899999999999999988765 35566678889998764
No 28
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=23.81 E-value=2.7e+02 Score=23.09 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=44.2
Q ss_pred hhhhhhhcCCCCeEEE-EeC-CCCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceE
Q 016414 118 EFSSILKQGCAPKILI-TTC-RFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDAL 195 (390)
Q Consensus 118 Ef~~~~~~~~~PKiLI-TTS-r~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L 195 (390)
.-..+|..-..|=.|+ .+. ...|..+++|++|+..+=|.-......... ....+.+.... ...++
T Consensus 9 qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~--~~~gI 75 (94)
T cd02974 9 QLKAYLERLENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPG--EDTGI 75 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCC--CcccE
Confidence 4556676656665553 444 345677999999999987754432221111 23555554333 34678
Q ss_pred EEeeCCCC
Q 016414 196 LIIGLPDG 203 (390)
Q Consensus 196 ~I~~lP~G 203 (390)
++.-+|.|
T Consensus 76 rF~GiP~G 83 (94)
T cd02974 76 RFAGIPMG 83 (94)
T ss_pred EEEecCCc
Confidence 88888887
No 29
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.42 E-value=1.1e+02 Score=29.37 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=19.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016414 40 MIKNKEKRSAVHAKLKHQKKVEKRKKLKARDAA 72 (390)
Q Consensus 40 ~i~nk~~r~~~~~~~~~~k~~~k~~~~~~r~~~ 72 (390)
+-+..+||.+....++.|...++.+.|+.++++
T Consensus 44 HKRKveRrK~Aqeqikeq~ReerielRk~~rqe 76 (217)
T KOG4709|consen 44 HKRKVERRKAAQEQIKEQLREERIELRKERRQE 76 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666544433
No 30
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.25 E-value=2.2e+02 Score=30.14 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCCeEEEEeCCCCC-CcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCC
Q 016414 126 GCAPKILITTCRFNS-NRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG 203 (390)
Q Consensus 126 ~~~PKiLITTSr~pS-~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~G 203 (390)
...+.|+|.+..... .....++..|+.-=+++......+. ++.-.++|...|+..+||+.++.-.-..+.|-+|-.|
T Consensus 333 ~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~-~k~q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~ 410 (429)
T COG0124 333 ETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRK-LKKQFKYADKLGARFAVILGEDELANGVVTVKDLATG 410 (429)
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEecccc-HHHHHHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCC
Confidence 347888998877765 6788999999997777765544333 9999999999999999999998766667777777766
No 31
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=22.79 E-value=1.6e+02 Score=26.64 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=29.1
Q ss_pred cCCcchhcccccc-----cHHHHHHHHHhCCCceEEEEEecCC
Q 016414 153 VIPNSHYYKRGTY-----DLKKIIEYAKKKDFTSIIVVHTNRR 190 (390)
Q Consensus 153 i~PnS~~~~R~k~-----~Lkdiv~~A~~~g~T~lIv~~E~r~ 190 (390)
++|.-+|..-... .|.+.+......||.|+++++.+..
T Consensus 54 l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~ 96 (142)
T PF10673_consen 54 LFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDSE 96 (142)
T ss_pred ecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCcc
Confidence 3588777765422 3777788888999999999998765
No 32
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=21.37 E-value=2e+02 Score=28.02 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=49.7
Q ss_pred ccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceEEEEEeceeehhhhccCCCCCCCCCeEE-ecC-CCcchh
Q 016414 165 YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELV-LNN-FATRLG 242 (390)
Q Consensus 165 ~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~~FkI~nv~l~kdI~~~g~~~~~~P~LI-lnn-F~t~lg 242 (390)
.+..- ...|-.+||..+ =+.-..|......|+| |-|++-.|.=-...+.|+..+-.++.+|.++ |.| .+...-
T Consensus 30 ss~~~-y~~aL~~GcRcv-ElD~wdg~~~ep~V~H---G~t~ts~i~f~dv~~~Ik~~aF~~s~yPvILslE~Hcs~~qQ 104 (231)
T cd08598 30 SSVEG-YIRALQRGCRCV-EIDVWDGDDGEPVVTH---GYTLTSSVPFRDVCRAIKKYAFVTSPYPLILSLEVHCDAEQQ 104 (231)
T ss_pred cCHHH-HHHHHHhCCcEE-EEEeecCCCCCcEEee---CCCCcCceEHHHHHHHHHHHhccCCCCCEEEEEecCCCHHHH
Confidence 34443 344567898754 3444455334566776 7776655443334445555565677899754 655 555544
Q ss_pred HHHHHHHHhhCC
Q 016414 243 HRVGRLIQSLFP 254 (390)
Q Consensus 243 ~~i~~mfq~LFP 254 (390)
..|+.++...|.
T Consensus 105 ~~ma~~l~~~lG 116 (231)
T cd08598 105 ERMVEIMKETFG 116 (231)
T ss_pred HHHHHHHHHHHH
Confidence 577777776665
No 33
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=20.11 E-value=1.8e+02 Score=30.37 Aligned_cols=84 Identities=18% Similarity=0.106 Sum_probs=54.9
Q ss_pred CCeEEEEeCC-CCCCcHHHHHHHHHhcCCcchhcccccccHHHHHHHHHhCCCceEEEEEecCCCCceEEEeeCCCCceE
Q 016414 128 APKILITTCR-FNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTA 206 (390)
Q Consensus 128 ~PKiLITTSr-~pS~r~r~F~kdL~~i~PnS~~~~R~k~~Lkdiv~~A~~~g~T~lIv~~E~r~~p~~L~I~~lP~GPT~ 206 (390)
.+.|+|+... .......+++..|+.-=-.+....+ ..++++.+.+|...|+..++|+.++.-....+.|-++-.|-..
T Consensus 325 ~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~-~~~l~k~~k~A~~~~~~~viiiG~~E~~~~~vtvk~l~~~~q~ 403 (430)
T CHL00201 325 SIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLS-SSNFHKQIKQAGKKRAKACIILGDNEIMDNCITIKWLDEQVQE 403 (430)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeC-CCCHHHHHHHHHHcCCCEEEEEechHHhCCcEEEEECCCCCcE
Confidence 3457777532 2233456677777653112222222 3568999999999999999999987666677888888777655
Q ss_pred EEEEec
Q 016414 207 HFKLSK 212 (390)
Q Consensus 207 ~FkI~n 212 (390)
...+.+
T Consensus 404 ~i~~~~ 409 (430)
T CHL00201 404 NAQYSN 409 (430)
T ss_pred EEcHHH
Confidence 554443
Done!