Query 016415
Match_columns 390
No_of_seqs 211 out of 1533
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 9.3E-30 3.2E-34 251.0 26.2 302 5-347 46-361 (429)
2 3qe7_A Uracil permease; uracil 68.5 86 0.0029 30.1 16.0 127 250-378 41-199 (429)
3 1bts_A BAND 3 anion transport 44.3 10 0.00036 21.1 1.4 20 5-24 6-25 (26)
4 2fyu_K Ubiquinol-cytochrome C 5.2 5.5E+02 0.019 16.9 2.9 26 79-104 13-38 (56)
5 1wa7_B TIP, hypothetical 28.7 4.6 3.1E+02 0.01 14.8 1.0 11 199-209 2-12 (26)
6 2k1k_A Ephrin type-A receptor 3.3 8.8E+02 0.03 14.3 3.5 12 362-373 14-25 (38)
7 1jb0_L Photosystem 1 reaction 3.1 1.7E+03 0.059 17.7 4.8 19 252-270 108-126 (154)
8 3gia_A Uncharacterized protein 2.6 2.7E+03 0.092 18.6 8.3 19 310-328 338-356 (444)
9 2z73_A Rhodopsin; visual pigme 2.3 2.8E+03 0.095 18.3 6.4 47 227-273 44-90 (448)
10 2ww9_B Protein transport prote 2.3 1.7E+03 0.059 15.5 4.5 33 50-88 43-75 (80)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.97 E-value=9.3e-30 Score=251.03 Aligned_cols=302 Identities=15% Similarity=0.092 Sum_probs=231.3
Q ss_pred hhhhhhhhhHhhhhcCCccccc-cChhHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHh--hhh--h
Q 016415 5 YTDTSVVPPLIYAVMGTSREIA-IGPVAVVSLLLSSMIQKVQDPLANPIAYRNFVLTATFFAGIFQASFGLF--RLG--F 79 (390)
Q Consensus 5 ~~~s~~i~~li~~l~G~s~~~~-~gp~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~--~lg--~ 79 (390)
-+++|.+++++.++++++|.-. .|++.+.-..+..+.+ ++ ++.+....+++|+++++++.+ |+| +
T Consensus 46 ~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g---------~~~~~gavi~aGli~ill~~~~~~~g~~~ 115 (429)
T 3qe7_A 46 VLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LG---------YEVALGGFIMCGVLFCLVSFIVKKAGTGW 115 (429)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GC---------HHHHHHHHHHHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cC---------HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3688999999999987777544 7887554333333332 22 688899999999999999998 775 8
Q ss_pred HhhhchHhHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCchHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHhhhh
Q 016415 80 LIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKAVWNSLHHTWSPQNFILGCSFLCFILTTRYLGRK 159 (390)
Q Consensus 80 l~~~ip~~Vi~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 159 (390)
+.|++|+.|++.+++.+|+.+...++++..|.... + +. .++.++.+++.+++++++++++.|+
T Consensus 116 l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~---~-------------~~-~~~~~~~la~~tl~iii~~~~~~kg 178 (429)
T 3qe7_A 116 LDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAE---G-------------QT-PDSKTIIISITTLAVTVLGSVLFRG 178 (429)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBT---T-------------BC-CCHHHHHHHHHHHHHHHHHHHSSST
T ss_pred HHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCC---C-------------cc-ccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999875432110 0 11 4567788999998888777665555
Q ss_pred hhcccccCccchhHHHHHHHHHHHHhhccCCCeeeecccc-cCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016415 160 KRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKHID-RGLNPSSVHQIQFHGQHVGEVAKIGFVAAIVALAEAIAV 238 (390)
Q Consensus 160 ~~~~~~~p~~~~li~iv~~~~~~~~~~~~~~~~~~~g~~p-~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 238 (390)
+.|. ++.++++++++++++.++..+. +.+++.| .++|.+..|+++ ++ .+...+.+++++.+|++..
T Consensus 179 ~~~~-----~aiLigivvg~~~a~~~G~~d~--~~v~~a~~~~lP~~~~P~f~--~~----~i~~i~~i~lV~~~Eslg~ 245 (429)
T 3qe7_A 179 FLAI-----IPILIGVLVGYALSFAMGIVDT--TPIINAHWFALPTLYTPRFE--WF----AILTILPAALVVIAEHVGH 245 (429)
T ss_dssp TTTT-----HHHHHHHHHHHHHHHHHHHTTS--SHHHHSCSSCCCCCCCCCCC--HH----HHHHHTHHHHHHHHHHHHH
T ss_pred cchh-----hHHHHHHHHHHHHHHHhcCCCc--ccccccccccccCCCCCccc--HH----HHHHHHHHHHHHHHHHHHH
Confidence 4332 3789999999999999886322 2233322 345666666554 32 2334566788899999988
Q ss_pred hHHhhhccCc----ccCCCchhhHHhhhhhhhhhcccccCccccchhhhhhhcCcccchhhHHHHHHHHHHHHH--hhHH
Q 016415 239 GRSFASIKGY----RLDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCESTVSNIVMAITVLISLEF--FTRL 312 (390)
Q Consensus 239 ~~~~~~~~~~----~~~~n~el~a~G~~N~~s~~fGg~p~~~~~s~s~~~~~~Ga~t~~a~i~~~~~~l~~~l~--~~~~ 312 (390)
.++.+++.|+ +.|.|||+.+||++|+++++||++|.+++..++++...+|++||++..++|++++++.++ ++++
T Consensus 246 ~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al 325 (429)
T 3qe7_A 246 LVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAA 325 (429)
T ss_dssp HHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766654 456799999999999999999999999888888889999999999999999988877653 6789
Q ss_pred HhhchhhHHHHHHHHHhcccCChHHHHhH--hhcCch
Q 016415 313 LYYTPMAILASIIMSALPGLIDFNEFYNI--WKVDKL 347 (390)
Q Consensus 313 l~~iP~~vla~ili~~~~~li~~~~~~~~--~~~~~~ 347 (390)
++.+|.+++|++.++ .+.++....+|.+ .|.++.
T Consensus 326 ~~~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~~ 361 (429)
T 3qe7_A 326 IQMIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDYN 361 (429)
T ss_dssp HTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCC
Confidence 999999999998755 8899988888888 677754
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=68.52 E-value=86 Score=30.10 Aligned_cols=127 Identities=14% Similarity=0.073 Sum_probs=70.5
Q ss_pred cCCCchhhHHhhhhhhhhhcccccCcc----ccch----hhhhhhcCcccch-hhHHHHHHHHHHHHHh-----hHHHhh
Q 016415 250 LDGNKEMVAMGFMNIVGSFTSCYVATG----SFSR----SAVNFRAGCESTV-SNIVMAITVLISLEFF-----TRLLYY 315 (390)
Q Consensus 250 ~~~n~el~a~G~~N~~s~~fGg~p~~~----~~s~----s~~~~~~Ga~t~~-a~i~~~~~~l~~~l~~-----~~~l~~ 315 (390)
.|++..+++-|++.++=+++++.+.-. ++.- +.+.. .|-+.-+ +.+.+|++.+++.++. ..+..+
T Consensus 41 l~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~ 119 (429)
T 3qe7_A 41 INPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVL 119 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 355689999999999998886444221 1111 11111 2212222 3334444444444332 258889
Q ss_pred chhhHHHHHHHHHhcccCChHHHHhHh-------hcCchhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q 016415 316 TPMAILASIIMSALPGLIDFNEFYNIW-------KVDKLDFLACIGAFFGVLFA-----------SVEIGLLVAVIFLSC 377 (390)
Q Consensus 316 iP~~vla~ili~~~~~li~~~~~~~~~-------~~~~~d~~v~~~t~~~~~~~-----------~~~~Gi~~Gv~~~~~ 377 (390)
+|..+.|..+..+|..+.... ++... ..+..+..+.+.+++.++.. ++..|+++|-+++..
T Consensus 120 ~PpvviG~~i~~IGl~l~~~~-~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~kg~~~~~aiLigivvg~~~a~~ 198 (429)
T 3qe7_A 120 FPPAAMGAIVAVIGLELAGVA-AGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFA 198 (429)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-HHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCeeeHHHHHHHHHHHHHHH-HHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 999999999999998876211 11111 01223455666666655443 555666666666554
Q ss_pred H
Q 016415 378 C 378 (390)
Q Consensus 378 ~ 378 (390)
.
T Consensus 199 ~ 199 (429)
T 3qe7_A 199 M 199 (429)
T ss_dssp H
T ss_pred h
Confidence 4
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=44.27 E-value=10 Score=21.06 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=15.2
Q ss_pred hhhhhhhhhHhhhhcCCccc
Q 016415 5 YTDTSVVPPLIYAVMGTSRE 24 (390)
Q Consensus 5 ~~~s~~i~~li~~l~G~s~~ 24 (390)
++.++.+.+++|++|++-|.
T Consensus 6 ~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHhcccC
Confidence 56789999999999998773
No 4
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=5.24 E-value=5.5e+02 Score=16.85 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=22.6
Q ss_pred hHhhhchHhHHHHHHHHHHHHHHHHh
Q 016415 79 FLIDILSHAAVVGFMAGAAIVIGLQQ 104 (390)
Q Consensus 79 ~l~~~ip~~Vi~Gf~~gigl~i~~~q 104 (390)
...+++|....-|..+++|++....|
T Consensus 13 ~~~~w~psa~~~Gaaa~v~~ly~tdw 38 (56)
T 2fyu_K 13 LARNWVPTASLWGAVGAVGLVWATDW 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhhhhhhhhhhhhheeeeccH
Confidence 45789999999999999999988764
No 5
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=4.62 E-value=3.1e+02 Score=14.79 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=6.5
Q ss_pred ccCCCCCcccc
Q 016415 199 DRGLNPSSVHQ 209 (390)
Q Consensus 199 p~~~p~~~~p~ 209 (390)
|.|+|+|.+|.
T Consensus 2 ~PG~P~P~LPp 12 (26)
T 1wa7_B 2 DPGMPTPPLPP 12 (26)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCCCCCCCC
Confidence 45666666664
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=3.31 E-value=8.8e+02 Score=14.33 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 016415 362 ASVEIGLLVAVI 373 (390)
Q Consensus 362 ~~~~~Gi~~Gv~ 373 (390)
.++..|.++|++
T Consensus 14 AGiVvG~v~gv~ 25 (38)
T 2k1k_A 14 VAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehHHHHHHH
Confidence 344455555544
No 7
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L*
Probab=3.12 E-value=1.7e+03 Score=17.66 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=13.7
Q ss_pred CCchhhHHhhhhhhhhhcc
Q 016415 252 GNKEMVAMGFMNIVGSFTS 270 (390)
Q Consensus 252 ~n~el~a~G~~N~~s~~fG 270 (390)
+++.--++|.+++.+||+=
T Consensus 108 ~~~l~t~~gWs~Ft~GF~i 126 (154)
T 1jb0_L 108 SDPLKTSEGWSQFTAGFFV 126 (154)
T ss_dssp SCGGGSHHHHHHHHHHHHH
T ss_pred cccccCcccHhHcccceee
Confidence 5556677888888888764
No 8
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=2.55 E-value=2.7e+03 Score=18.55 Aligned_cols=19 Identities=0% Similarity=-0.061 Sum_probs=9.2
Q ss_pred hHHHhhchhhHHHHHHHHH
Q 016415 310 TRLLYYTPMAILASIIMSA 328 (390)
Q Consensus 310 ~~~l~~iP~~vla~ili~~ 328 (390)
.++-...+....+..+.+.
T Consensus 338 ~~~~~l~~~~~~~~~~~~~ 356 (444)
T 3gia_A 338 FNMEGVASITSAVFMVIYL 356 (444)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 3444455555555544443
No 9
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=2.31 E-value=2.8e+03 Score=18.34 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhHHhhhccCcccCCCchhhHHhhhhhhhhhccccc
Q 016415 227 AAIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSCYV 273 (390)
Q Consensus 227 ~~~v~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~~N~~s~~fGg~p 273 (390)
+.+++++....+.-.+-++...+...|.=+..+++++++.+++.++|
T Consensus 44 i~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p 90 (448)
T 2z73_A 44 CGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFP 90 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhcc
Confidence 34444443333333333333444556788899999999988775555
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=2.28 E-value=1.7e+03 Score=15.54 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=20.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhchHhH
Q 016415 50 NPIAYRNFVLTATFFAGIFQASFGLFRLGFLIDILSHAA 88 (390)
Q Consensus 50 ~~~~~~~~~~~~~~l~Gv~~~~lg~~~lg~l~~~ip~~V 88 (390)
|.+++.. .+-.+|+-++++|+. |++++.+-.|+
T Consensus 43 dr~Ef~~----iak~t~iG~~imG~I--GfiIkLI~iPI 75 (80)
T 2ww9_B 43 DLKEYTK----IVKAVGIGFIAVGII--GYAIKLIHIPI 75 (80)
T ss_dssp CHHHHHH----HHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CHHHHHH----HHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 4455544 445677788888885 67766654443
Done!