Query 016415
Match_columns 390
No_of_seqs 211 out of 1533
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 13:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016415.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016415hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 12.0 1E+02 0.0076 15.7 4.2 13 363-375 13-25 (32)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 7.5 87 0.0063 15.9 1.3 20 4-23 7-26 (30)
3 d2q66a1 a.160.1.1 (A:202-351) 5.1 1.9E+02 0.014 21.3 2.7 22 88-109 25-46 (150)
4 d1q79a1 a.160.1.1 (A:215-364) 4.7 2.2E+02 0.016 20.9 2.8 20 89-108 26-45 (150)
5 d1jb0l_ f.31.1.1 (L:) Photosys 4.3 5.6E+02 0.041 18.5 4.8 19 252-270 105-123 (151)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 2.6 1.3E+03 0.093 19.2 6.8 21 86-106 409-429 (472)
7 d1u19a_ f.13.1.2 (A:) Rhodopsi 2.4 1.1E+03 0.078 17.9 5.7 44 228-271 48-91 (348)
8 d1k82a1 a.156.1.2 (A:129-216) 2.3 1.7E+02 0.013 19.2 -0.1 14 252-266 30-43 (88)
9 d1q90m_ f.23.25.1 (M:) PetM su 2.0 5.7E+02 0.041 13.1 1.8 11 91-101 3-13 (34)
10 d2fyuk1 f.23.15.1 (K:1-53) Sub 1.8 8.2E+02 0.06 14.2 2.6 20 80-99 14-33 (53)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.97 E-value=1e+02 Score=15.74 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 016415 363 SVEIGLLVAVIFL 375 (390)
Q Consensus 363 ~~~~Gi~~Gv~~~ 375 (390)
.+..|+.+|+.++
T Consensus 13 alffgiavgiifa 25 (32)
T d2e74e1 13 ALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhheee
Confidence 3344555555443
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.51 E-value=87 Score=15.92 Aligned_cols=20 Identities=10% Similarity=0.291 Sum_probs=15.3
Q ss_pred ehhhhhhhhhHhhhhcCCcc
Q 016415 4 VYTDTSVVPPLIYAVMGTSR 23 (390)
Q Consensus 4 ~~~~s~~i~~li~~l~G~s~ 23 (390)
+.+|+++++.+.+++|=..|
T Consensus 7 v~ifac~i~lfffaiffrep 26 (30)
T d2axtt1 7 VFIFACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 56788999988888875554
No 3
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.07 E-value=1.9e+02 Score=21.33 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 016415 88 AVVGFMAGAAIVIGLQQLKGLI 109 (390)
Q Consensus 88 Vi~Gf~~gigl~i~~~ql~~~~ 109 (390)
=+.||..|+.+.|+..-+....
T Consensus 25 n~~GylGGI~waILvArvCql~ 46 (150)
T d2q66a1 25 NIFGFPGGVAWAMLVARICQLY 46 (150)
T ss_dssp GGGTSCCHHHHHHHHHHHHHHS
T ss_pred ccccccHHHHHHHHHHHHHHhC
Confidence 3579999999999988766543
No 4
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.73 E-value=2.2e+02 Score=20.94 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 016415 89 VVGFMAGAAIVIGLQQLKGL 108 (390)
Q Consensus 89 i~Gf~~gigl~i~~~ql~~~ 108 (390)
+.||..|+.+.|+..-+...
T Consensus 26 ~~GflGGI~waILvArvCql 45 (150)
T d1q79a1 26 ILGFLGGVSWAMLVARTCQL 45 (150)
T ss_dssp TTTSBCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHH
Confidence 56999999999998776654
No 5
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=4.28 E-value=5.6e+02 Score=18.53 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=12.4
Q ss_pred CCchhhHHhhhhhhhhhcc
Q 016415 252 GNKEMVAMGFMNIVGSFTS 270 (390)
Q Consensus 252 ~n~el~a~G~~N~~s~~fG 270 (390)
.+.---+.|.+++.++|+=
T Consensus 105 ~d~l~t~~gWs~F~~GF~~ 123 (151)
T d1jb0l_ 105 SDPLKTSEGWSQFTAGFFV 123 (151)
T ss_dssp SCGGGSHHHHHHHHHHHHH
T ss_pred cccccCcccHHHhhchhhh
Confidence 3444457788888777763
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.61 E-value=1.3e+03 Score=19.25 Aligned_cols=21 Identities=0% Similarity=-0.143 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHHHHHHHhhh
Q 016415 86 HAAVVGFMAGAAIVIGLQQLK 106 (390)
Q Consensus 86 ~~Vi~Gf~~gigl~i~~~ql~ 106 (390)
+....++.....+.+...+++
T Consensus 409 ~~l~~av~i~~~l~~~i~yiP 429 (472)
T d1wpga4 409 IWLLGSICLSMSLHFLILYVD 429 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777766665544
No 7
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.39 E-value=1.1e+03 Score=17.90 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhHHhhhccCcccCCCchhhHHhhhhhhhhhccc
Q 016415 228 AIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSC 271 (390)
Q Consensus 228 ~~v~~~~~~~~~~~~~~~~~~~~~~n~el~a~G~~N~~s~~fGg 271 (390)
.+++++-...+.-.+-++++.+...|.-+..+.+++++.+++..
T Consensus 48 ~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~ 91 (348)
T d1u19a_ 48 IMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGF 91 (348)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333333233333346778888888888666553
No 8
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=2.30 E-value=1.7e+02 Score=19.24 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=11.4
Q ss_pred CCchhhHHhhhhhhh
Q 016415 252 GNKEMVAMGFMNIVG 266 (390)
Q Consensus 252 ~n~el~a~G~~N~~s 266 (390)
.||..++ |++|...
T Consensus 30 lDQ~~ia-GiGN~y~ 43 (88)
T d1k82a1 30 MDNKLVV-GVGNIYA 43 (88)
T ss_dssp TCTTTCS-SCCHHHH
T ss_pred Hcccccc-ccchHHH
Confidence 5888887 9999875
No 9
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.04 E-value=5.7e+02 Score=13.06 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 016415 91 GFMAGAAIVIG 101 (390)
Q Consensus 91 Gf~~gigl~i~ 101 (390)
||++|.++.+.
T Consensus 3 ~fiagta~tmi 13 (34)
T d1q90m_ 3 EFIAGTALTMV 13 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred ceecchhHHHH
Confidence 45555555544
No 10
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.80 E-value=8.2e+02 Score=14.22 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred HhhhchHhHHHHHHHHHHHH
Q 016415 80 LIDILSHAAVVGFMAGAAIV 99 (390)
Q Consensus 80 l~~~ip~~Vi~Gf~~gigl~ 99 (390)
..+++|..+.-|..+|+++.
T Consensus 14 a~~wips~~~~G~a~gl~lv 33 (53)
T d2fyuk1 14 ARNWVPTASLWGAVGAVGLV 33 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhheeee
Done!