Query 016416
Match_columns 390
No_of_seqs 246 out of 2961
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 13:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 100.0 1.4E-43 4.9E-48 323.0 35.3 272 97-389 11-295 (306)
2 1zgk_A Kelch-like ECH-associat 100.0 5.6E-43 1.9E-47 319.4 35.7 269 95-386 22-307 (308)
3 2xn4_A Kelch-like protein 2; s 100.0 9.4E-43 3.2E-47 317.0 35.6 269 97-387 15-298 (302)
4 2vpj_A Kelch-like protein 12; 100.0 6.8E-42 2.3E-46 311.2 35.4 269 96-387 13-299 (301)
5 4asc_A Kelch repeat and BTB do 100.0 2.9E-42 9.8E-47 315.8 28.6 259 97-375 4-286 (315)
6 2woz_A Kelch repeat and BTB do 100.0 2.8E-41 9.6E-46 309.6 30.8 268 96-385 14-304 (318)
7 2uvk_A YJHT; unknown function, 100.0 4.2E-39 1.4E-43 299.9 28.5 264 97-378 19-354 (357)
8 3ii7_A Kelch-like protein 7; p 100.0 8.8E-38 3E-42 284.7 28.1 226 142-386 11-245 (306)
9 1zgk_A Kelch-like ECH-associat 100.0 3.1E-37 1.1E-41 281.4 26.7 231 137-385 19-259 (308)
10 2xn4_A Kelch-like protein 2; s 100.0 1.1E-36 3.7E-41 277.0 29.0 228 139-385 12-248 (302)
11 2uvk_A YJHT; unknown function, 100.0 1.9E-36 6.4E-41 282.0 28.1 247 121-385 2-313 (357)
12 2vpj_A Kelch-like protein 12; 100.0 6.9E-36 2.4E-40 271.5 28.6 228 140-386 12-251 (301)
13 4asc_A Kelch repeat and BTB do 100.0 8.4E-36 2.9E-40 272.8 26.5 223 142-386 4-241 (315)
14 2woz_A Kelch repeat and BTB do 100.0 1.2E-35 4.1E-40 272.1 25.5 230 96-342 55-315 (318)
15 2zwa_A Leucine carboxyl methyl 100.0 1.2E-32 4.2E-37 276.6 25.1 216 138-373 393-642 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 1.9E-31 6.5E-36 267.9 23.8 236 96-344 396-675 (695)
17 1k3i_A Galactose oxidase precu 100.0 1.8E-31 6.1E-36 267.6 20.9 260 107-387 166-518 (656)
18 1k3i_A Galactose oxidase precu 100.0 7.6E-29 2.6E-33 248.5 23.8 251 97-359 197-548 (656)
19 2ovr_B FBW7, F-BOX/WD repeat p 99.1 7.6E-08 2.6E-12 91.2 28.0 274 43-360 15-348 (445)
20 1p22_A F-BOX/WD-repeat protein 99.1 2.4E-08 8.1E-13 94.5 22.1 275 44-360 8-365 (435)
21 3v7d_B Cell division control p 99.0 1.5E-07 5.2E-12 89.5 23.6 277 44-360 12-381 (464)
22 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 5.2E-09 1.8E-13 67.4 3.9 45 44-88 6-50 (53)
23 2e31_A FBS1, F-box only protei 98.4 6.9E-08 2.3E-12 84.9 3.1 47 44-90 48-95 (297)
24 3dsm_A Uncharacterized protein 98.4 0.00056 1.9E-08 61.8 27.5 220 106-361 16-254 (328)
25 3dsm_A Uncharacterized protein 98.3 0.00017 5.7E-09 65.3 22.2 236 96-360 52-302 (328)
26 3q7m_A Lipoprotein YFGL, BAMB; 98.3 0.0025 8.7E-08 58.3 29.9 222 97-371 103-344 (376)
27 3mbr_X Glutamine cyclotransfer 98.2 0.00042 1.4E-08 59.3 20.1 188 138-342 26-223 (243)
28 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.0043 1.5E-07 56.8 28.8 235 96-372 52-304 (376)
29 3mbr_X Glutamine cyclotransfer 98.1 0.0011 3.9E-08 56.5 20.7 164 181-375 25-191 (243)
30 3nol_A Glutamine cyclotransfer 98.0 0.0013 4.4E-08 56.8 19.5 186 140-342 50-244 (262)
31 3nol_A Glutamine cyclotransfer 97.7 0.0027 9.2E-08 54.8 17.2 163 181-373 47-211 (262)
32 3jrp_A Fusion protein of prote 97.6 0.0021 7.2E-08 58.3 16.4 242 98-376 24-298 (379)
33 2iwa_A Glutamine cyclotransfer 97.6 0.0092 3.1E-07 51.9 19.4 186 142-344 31-227 (266)
34 3nok_A Glutaminyl cyclase; bet 97.6 0.003 1E-07 54.5 15.8 151 139-309 61-212 (268)
35 1rwi_B Serine/threonine-protei 97.6 0.015 5E-07 50.2 20.6 225 97-360 34-264 (270)
36 3vgz_A Uncharacterized protein 97.5 0.046 1.6E-06 48.9 23.6 230 97-360 52-303 (353)
37 2ovr_B FBW7, F-BOX/WD repeat p 97.4 0.051 1.7E-06 50.7 23.9 193 142-360 248-442 (445)
38 1gxr_A ESG1, transducin-like e 97.4 0.007 2.4E-07 53.8 16.8 183 142-360 108-296 (337)
39 4ery_A WD repeat-containing pr 97.4 0.037 1.3E-06 48.8 20.7 227 98-360 36-268 (312)
40 1l0q_A Surface layer protein; 97.3 0.006 2.1E-07 55.8 15.8 182 99-312 3-194 (391)
41 1l0q_A Surface layer protein; 97.3 0.0026 8.8E-08 58.4 13.2 178 144-360 3-189 (391)
42 3vgz_A Uncharacterized protein 97.3 0.08 2.7E-06 47.2 23.3 196 142-360 52-262 (353)
43 3hfq_A Uncharacterized protein 97.3 0.0019 6.5E-08 58.3 11.9 189 109-314 20-227 (347)
44 3nok_A Glutaminyl cyclase; bet 97.3 0.015 5.1E-07 50.2 16.4 158 181-373 59-220 (268)
45 1p22_A F-BOX/WD-repeat protein 97.3 0.018 6E-07 53.8 18.5 186 139-360 139-325 (435)
46 2iwa_A Glutamine cyclotransfer 97.2 0.022 7.6E-07 49.4 17.1 154 180-360 24-181 (266)
47 2z2n_A Virginiamycin B lyase; 97.2 0.086 2.9E-06 45.7 21.9 221 97-358 25-253 (299)
48 1ri6_A Putative isomerase YBHE 97.2 0.066 2.3E-06 47.5 21.1 245 97-376 49-320 (343)
49 3bws_A Protein LP49; two-domai 97.2 0.03 1E-06 51.9 19.3 149 146-312 92-248 (433)
50 3jro_A Fusion protein of prote 97.2 0.013 4.6E-07 59.1 17.4 241 98-375 22-295 (753)
51 2z2n_A Virginiamycin B lyase; 97.2 0.11 3.6E-06 45.2 24.0 222 97-360 67-295 (299)
52 3jrp_A Fusion protein of prote 97.2 0.015 5.1E-07 52.6 16.1 191 142-360 22-240 (379)
53 3bws_A Protein LP49; two-domai 97.1 0.019 6.7E-07 53.2 16.7 217 108-360 102-334 (433)
54 1q7f_A NHL, brain tumor CG1071 97.1 0.12 4.2E-06 44.7 23.9 231 98-360 41-280 (286)
55 4g56_B MGC81050 protein; prote 97.1 0.023 8E-07 51.6 16.7 226 98-360 106-343 (357)
56 1kb0_A Quinohemoprotein alcoho 97.1 0.28 9.7E-06 48.7 25.5 117 139-266 74-207 (677)
57 2qc5_A Streptogramin B lactona 97.0 0.14 4.8E-06 44.4 23.3 222 97-359 30-259 (300)
58 3no2_A Uncharacterized protein 97.0 0.1 3.4E-06 45.5 19.6 193 143-373 5-204 (276)
59 1gxr_A ESG1, transducin-like e 97.0 0.035 1.2E-06 49.1 16.7 186 98-311 110-300 (337)
60 1rwi_B Serine/threonine-protei 97.0 0.095 3.3E-06 44.9 19.0 183 142-360 34-222 (270)
61 1k8k_C P40, ARP2/3 complex 41 96.9 0.079 2.7E-06 47.6 18.9 241 98-375 21-285 (372)
62 1k8k_C P40, ARP2/3 complex 41 96.9 0.17 5.8E-06 45.4 20.8 195 98-316 65-285 (372)
63 2qc5_A Streptogramin B lactona 96.9 0.19 6.5E-06 43.5 21.4 220 97-359 72-299 (300)
64 3v9f_A Two-component system se 96.9 0.22 7.5E-06 50.4 23.2 187 98-314 418-618 (781)
65 4gqb_B Methylosome protein 50; 96.8 0.04 1.4E-06 49.8 15.8 226 98-360 94-331 (344)
66 4a2l_A BT_4663, two-component 96.8 0.32 1.1E-05 49.2 24.1 234 98-373 368-621 (795)
67 1w6s_A Methanol dehydrogenase 96.8 0.42 1.4E-05 46.7 23.9 118 139-266 59-199 (599)
68 4aez_A CDC20, WD repeat-contai 96.8 0.18 6.3E-06 46.2 20.4 186 98-312 104-298 (401)
69 2ast_B S-phase kinase-associat 96.8 0.00057 1.9E-08 61.8 3.1 44 43-86 5-48 (336)
70 1nir_A Nitrite reductase; hemo 96.8 0.11 3.7E-06 50.3 19.4 291 48-376 95-417 (543)
71 3l2o_B F-box only protein 4; s 96.8 0.00046 1.6E-08 60.0 2.1 43 47-89 5-47 (312)
72 2ad6_A Methanol dehydrogenase 96.7 0.48 1.7E-05 46.0 25.7 118 139-266 59-193 (571)
73 2hqs_A Protein TOLB; TOLB, PAL 96.7 0.14 4.6E-06 47.6 18.8 178 154-360 202-387 (415)
74 4aez_A CDC20, WD repeat-contai 96.7 0.25 8.4E-06 45.3 20.5 217 105-360 154-380 (401)
75 3ow8_A WD repeat-containing pr 96.7 0.25 8.4E-06 43.9 19.8 184 142-360 91-279 (321)
76 3v9f_A Two-component system se 96.6 0.31 1.1E-05 49.2 22.4 231 98-373 374-618 (781)
77 3mkq_A Coatomer beta'-subunit; 96.6 0.11 3.7E-06 52.5 18.7 226 97-360 25-259 (814)
78 1ri6_A Putative isomerase YBHE 96.6 0.08 2.7E-06 46.9 15.7 247 98-375 5-273 (343)
79 3jro_A Fusion protein of prote 96.6 0.034 1.2E-06 56.1 14.5 190 143-360 21-238 (753)
80 3u4y_A Uncharacterized protein 96.5 0.061 2.1E-06 47.7 14.8 232 97-360 9-252 (331)
81 3ow8_A WD repeat-containing pr 96.5 0.31 1E-05 43.3 19.2 215 104-358 99-319 (321)
82 4ery_A WD repeat-containing pr 96.5 0.15 5E-06 44.9 17.0 186 142-360 34-223 (312)
83 1got_B GT-beta; complex (GTP-b 96.5 0.43 1.5E-05 42.6 21.5 225 98-360 68-301 (340)
84 1pjx_A Dfpase, DIISOPROPYLFLUO 96.5 0.062 2.1E-06 47.2 14.2 233 97-360 28-299 (314)
85 1kb0_A Quinohemoprotein alcoho 96.5 0.81 2.8E-05 45.4 27.1 213 96-312 76-353 (677)
86 3fvz_A Peptidyl-glycine alpha- 96.5 0.44 1.5E-05 42.3 23.2 191 155-360 69-277 (329)
87 2fp8_A Strictosidine synthase; 96.4 0.2 6.7E-06 44.5 17.3 196 97-308 91-314 (322)
88 3vl1_A 26S proteasome regulato 96.4 0.44 1.5E-05 43.5 20.3 191 142-360 108-322 (420)
89 2ojh_A Uncharacterized protein 96.4 0.2 6.7E-06 43.0 17.0 190 102-315 57-266 (297)
90 3dwl_C Actin-related protein 2 96.4 0.044 1.5E-06 49.6 13.1 150 142-308 22-178 (377)
91 4a2l_A BT_4663, two-component 96.4 0.98 3.3E-05 45.6 24.7 241 98-373 321-578 (795)
92 2dg1_A DRP35, lactonase; beta 96.4 0.13 4.3E-06 45.7 15.8 153 142-307 55-213 (333)
93 3dwl_C Actin-related protein 2 96.4 0.066 2.3E-06 48.5 14.1 223 105-360 31-281 (377)
94 3v7d_B Cell division control p 96.3 0.66 2.3E-05 43.1 25.2 184 142-358 279-463 (464)
95 1vyh_C Platelet-activating fac 96.3 0.35 1.2E-05 44.6 19.0 225 100-360 123-369 (410)
96 3ei3_B DNA damage-binding prot 96.3 0.22 7.5E-06 45.1 17.4 183 144-360 87-282 (383)
97 3vl1_A 26S proteasome regulato 96.3 0.63 2.2E-05 42.5 23.8 223 99-360 111-365 (420)
98 3hfq_A Uncharacterized protein 96.3 0.079 2.7E-06 47.4 14.0 149 156-314 19-179 (347)
99 1r5m_A SIR4-interacting protei 96.3 0.18 6E-06 46.1 16.6 145 140-309 215-363 (425)
100 2p4o_A Hypothetical protein; p 96.3 0.53 1.8E-05 41.4 21.7 213 98-343 43-278 (306)
101 1vyh_C Platelet-activating fac 96.3 0.53 1.8E-05 43.3 19.9 146 142-312 119-270 (410)
102 3g4e_A Regucalcin; six bladed 96.2 0.09 3.1E-06 46.2 13.8 215 98-344 25-263 (297)
103 2hes_X YDR267CP; beta-propelle 96.2 0.38 1.3E-05 42.7 18.2 235 104-373 31-287 (330)
104 3bg1_A Protein SEC13 homolog; 96.2 0.23 7.8E-06 43.9 16.4 240 98-377 26-305 (316)
105 1yiq_A Quinohemoprotein alcoho 96.2 1.2 3.9E-05 44.4 26.2 116 139-265 67-199 (689)
106 1flg_A Protein (quinoprotein e 96.2 1 3.5E-05 43.8 24.0 116 139-265 65-200 (582)
107 1q7f_A NHL, brain tumor CG1071 96.2 0.54 1.8E-05 40.5 19.4 189 142-360 40-238 (286)
108 2ojh_A Uncharacterized protein 96.2 0.31 1.1E-05 41.7 16.8 223 107-360 22-258 (297)
109 2aq5_A Coronin-1A; WD40 repeat 96.1 0.31 1.1E-05 44.6 17.5 190 142-360 93-299 (402)
110 1sq9_A Antiviral protein SKI8; 96.1 0.72 2.5E-05 41.7 19.7 115 186-310 197-325 (397)
111 3g4e_A Regucalcin; six bladed 96.1 0.66 2.2E-05 40.5 21.7 187 142-360 24-229 (297)
112 1pjx_A Dfpase, DIISOPROPYLFLUO 96.0 0.29 9.8E-06 42.8 16.2 194 142-360 28-256 (314)
113 2ynn_A Coatomer subunit beta'; 96.0 0.69 2.3E-05 40.4 19.2 224 97-360 25-259 (304)
114 1npe_A Nidogen, entactin; glyc 96.0 0.62 2.1E-05 39.9 23.2 185 142-360 47-238 (267)
115 3f3f_A Nucleoporin SEH1; struc 96.0 0.52 1.8E-05 41.3 18.0 32 334-376 317-348 (351)
116 1got_B GT-beta; complex (GTP-b 96.0 0.76 2.6E-05 40.9 20.2 144 142-309 154-303 (340)
117 2pm7_B Protein transport prote 96.0 0.68 2.3E-05 40.3 19.3 200 143-375 67-295 (297)
118 3ju4_A Endo-N-acetylneuraminid 96.0 0.85 2.9E-05 41.3 20.8 185 170-360 277-514 (670)
119 2pm9_A Protein WEB1, protein t 96.0 0.68 2.3E-05 42.1 19.2 147 143-308 178-338 (416)
120 3i2n_A WD repeat-containing pr 96.0 0.26 8.7E-06 43.8 15.9 186 144-360 32-243 (357)
121 2pm7_B Protein transport prote 96.0 0.27 9.4E-06 42.9 15.8 195 142-360 20-238 (297)
122 3azo_A Aminopeptidase; POP fam 96.0 1.3 4.5E-05 43.4 22.1 189 155-360 161-369 (662)
123 3fm0_A Protein CIAO1; WDR39,SG 95.9 0.21 7.2E-06 44.8 14.7 182 142-345 27-216 (345)
124 2ad6_A Methanol dehydrogenase 95.9 1.4 4.8E-05 42.7 25.6 213 96-312 61-342 (571)
125 1kv9_A Type II quinohemoprotei 95.9 1.6 5.4E-05 43.2 25.3 116 139-265 63-194 (668)
126 3k26_A Polycomb protein EED; W 95.9 0.89 3E-05 40.3 19.9 194 98-308 35-261 (366)
127 2hes_X YDR267CP; beta-propelle 95.9 0.1 3.5E-06 46.6 12.4 193 142-360 118-328 (330)
128 4aow_A Guanine nucleotide-bind 95.8 0.68 2.3E-05 40.7 17.6 148 187-361 185-338 (340)
129 1w6s_A Methanol dehydrogenase 95.8 1.6 5.5E-05 42.5 23.2 213 96-312 61-349 (599)
130 3scy_A Hypothetical bacterial 95.7 0.38 1.3E-05 43.1 15.9 30 287-316 221-251 (361)
131 3v65_B Low-density lipoprotein 95.7 1.2 4.3E-05 40.6 25.1 219 97-360 87-318 (386)
132 4a11_B DNA excision repair pro 95.6 1.2 4.2E-05 40.1 19.4 229 99-360 114-365 (408)
133 3u4y_A Uncharacterized protein 95.6 1.1 3.7E-05 39.3 20.5 233 98-360 52-304 (331)
134 1kv9_A Type II quinohemoprotei 95.5 2.2 7.4E-05 42.3 25.8 209 96-309 65-335 (668)
135 2pbi_B Guanine nucleotide-bind 95.5 0.91 3.1E-05 40.7 17.5 226 98-360 77-315 (354)
136 3bg1_A Protein SEC13 homolog; 95.5 0.25 8.4E-06 43.7 13.4 194 142-360 24-247 (316)
137 2z3z_A Dipeptidyl aminopeptida 95.5 1.7 5.7E-05 43.0 20.8 185 155-360 235-435 (706)
138 3fm0_A Protein CIAO1; WDR39,SG 95.5 1.3 4.4E-05 39.5 18.9 185 100-305 31-223 (345)
139 3mkq_A Coatomer beta'-subunit; 95.4 0.39 1.3E-05 48.4 16.2 186 142-360 24-217 (814)
140 4a11_B DNA excision repair pro 95.4 1.3 4.3E-05 40.0 18.4 153 142-310 111-279 (408)
141 1ijq_A LDL receptor, low-densi 95.4 1.3 4.5E-05 39.1 27.1 216 102-360 5-238 (316)
142 3fvz_A Peptidyl-glycine alpha- 95.4 1.3 4.6E-05 39.1 23.1 221 108-360 70-322 (329)
143 1nir_A Nitrite reductase; hemo 95.4 0.25 8.5E-06 47.7 14.0 242 97-361 190-459 (543)
144 2hqs_A Protein TOLB; TOLB, PAL 95.3 1.3 4.4E-05 40.9 18.3 186 107-315 203-395 (415)
145 1erj_A Transcriptional repress 95.3 0.9 3.1E-05 41.4 16.9 150 142-308 134-288 (393)
146 4gga_A P55CDC, cell division c 95.3 0.74 2.5E-05 42.4 16.4 228 100-360 118-353 (420)
147 2p1m_B Transport inhibitor res 95.2 0.0075 2.6E-07 58.9 2.6 36 45-80 4-40 (594)
148 3zwl_B Eukaryotic translation 95.2 1.5 5.2E-05 38.7 19.3 191 98-312 45-254 (369)
149 1jmx_B Amine dehydrogenase; ox 95.2 1 3.6E-05 39.6 16.7 153 98-264 11-179 (349)
150 4g56_B MGC81050 protein; prote 95.2 0.24 8.1E-06 44.8 12.5 185 142-360 105-301 (357)
151 3k26_A Polycomb protein EED; W 95.2 0.8 2.7E-05 40.6 16.0 64 288-359 299-365 (366)
152 1r5m_A SIR4-interacting protei 95.1 1.8 6.1E-05 39.1 22.2 182 142-360 119-319 (425)
153 2ynn_A Coatomer subunit beta'; 95.1 1.2 4E-05 38.9 16.6 186 142-360 24-217 (304)
154 3i2n_A WD repeat-containing pr 95.0 0.38 1.3E-05 42.6 13.4 227 98-360 31-291 (357)
155 3no2_A Uncharacterized protein 95.0 1.5 5.3E-05 37.8 18.4 210 99-341 6-230 (276)
156 3e5z_A Putative gluconolactona 95.0 1.3 4.3E-05 38.4 16.4 188 143-360 40-246 (296)
157 3v65_B Low-density lipoprotein 95.0 2.1 7.1E-05 39.1 18.9 171 155-360 96-277 (386)
158 3c5m_A Oligogalacturonate lyas 95.0 0.84 2.9E-05 41.1 15.7 147 155-314 168-336 (396)
159 3ott_A Two-component system se 95.0 3.4 0.00012 41.4 22.3 189 98-313 384-592 (758)
160 2aq5_A Coronin-1A; WD40 repeat 94.9 1.5 5.1E-05 39.9 17.3 152 186-360 93-254 (402)
161 3pe7_A Oligogalacturonate lyas 94.9 0.77 2.6E-05 41.4 15.2 157 155-315 168-337 (388)
162 1n7d_A LDL receptor, low-densi 94.8 1.2 4E-05 44.4 17.3 216 105-360 384-614 (699)
163 2vdu_B TRNA (guanine-N(7)-)-me 94.8 2.6 8.7E-05 39.1 21.3 199 142-360 160-393 (450)
164 2ghs_A AGR_C_1268P; regucalcin 94.8 2.1 7.1E-05 37.9 19.0 143 142-306 60-209 (326)
165 2hz6_A Endoplasmic reticulum t 94.8 0.035 1.2E-06 50.8 5.6 180 140-371 7-199 (369)
166 1sq9_A Antiviral protein SKI8; 94.8 1.8 6.1E-05 39.0 17.3 198 142-360 25-267 (397)
167 4h5i_A Guanine nucleotide-exch 94.7 2.3 7.8E-05 38.3 18.9 209 141-375 143-358 (365)
168 2p4o_A Hypothetical protein; p 94.7 2 6.8E-05 37.6 21.6 190 142-360 42-242 (306)
169 2fp8_A Strictosidine synthase; 94.7 1.9 6.6E-05 37.9 16.9 233 99-360 32-313 (322)
170 1erj_A Transcriptional repress 94.7 0.96 3.3E-05 41.2 15.3 148 186-360 134-287 (393)
171 1yiq_A Quinohemoprotein alcoho 94.7 3.8 0.00013 40.6 24.6 209 96-309 69-340 (689)
172 3hrp_A Uncharacterized protein 94.7 2.6 9E-05 38.8 18.5 150 142-308 141-299 (409)
173 3scy_A Hypothetical bacterial 94.6 0.42 1.4E-05 42.9 12.6 147 156-309 30-188 (361)
174 4gga_A P55CDC, cell division c 94.6 0.6 2.1E-05 43.0 13.7 136 154-309 124-263 (420)
175 2pm9_A Protein WEB1, protein t 94.5 2.6 8.8E-05 38.1 19.3 193 142-360 78-294 (416)
176 3zwl_B Eukaryotic translation 94.5 0.88 3E-05 40.3 14.5 193 142-360 43-249 (369)
177 3odt_A Protein DOA1; ubiquitin 94.4 2.2 7.4E-05 36.7 19.2 222 98-360 30-255 (313)
178 1pgu_A Actin interacting prote 94.4 3 0.0001 39.9 19.1 143 187-360 456-614 (615)
179 4gqb_B Methylosome protein 50; 94.1 1.9 6.5E-05 38.6 15.7 186 142-360 93-289 (344)
180 3ei3_B DNA damage-binding prot 94.1 0.81 2.8E-05 41.3 13.3 144 188-360 87-236 (383)
181 1npe_A Nidogen, entactin; glyc 94.0 2.6 8.7E-05 35.9 19.4 187 97-311 47-242 (267)
182 1flg_A Protein (quinoprotein e 93.9 4.9 0.00017 39.0 24.2 118 96-217 67-200 (582)
183 2pbi_B Guanine nucleotide-bind 93.9 3.3 0.00011 37.0 21.8 135 154-309 175-317 (354)
184 3odt_A Protein DOA1; ubiquitin 93.9 2.7 9.4E-05 36.0 21.2 183 140-360 111-296 (313)
185 3m0c_C LDL receptor, low-densi 93.9 6 0.0002 39.9 29.2 217 103-360 400-632 (791)
186 3iz6_a 40S ribosomal protein R 93.9 3.5 0.00012 37.2 19.5 183 154-360 179-375 (380)
187 1yfq_A Cell cycle arrest prote 93.9 3 0.0001 36.4 19.8 185 98-308 24-226 (342)
188 4aow_A Guanine nucleotide-bind 93.9 2.6 9E-05 36.7 16.1 147 142-309 97-248 (340)
189 2dg1_A DRP35, lactonase; beta 93.9 0.39 1.3E-05 42.4 10.5 113 186-313 55-177 (333)
190 4ggc_A P55CDC, cell division c 93.8 2.5 8.7E-05 36.4 15.7 228 100-360 38-273 (318)
191 4e54_B DNA damage-binding prot 93.8 4 0.00014 37.5 20.0 105 141-262 219-329 (435)
192 4e54_B DNA damage-binding prot 93.8 0.42 1.4E-05 44.3 11.0 108 187-309 132-242 (435)
193 3v64_C Agrin; beta propeller, 93.8 3.6 0.00012 36.8 19.9 173 155-360 53-234 (349)
194 1pgu_A Actin interacting prote 93.6 5.2 0.00018 38.3 20.4 146 189-360 175-328 (615)
195 3sfz_A APAF-1, apoptotic pepti 93.6 4.1 0.00014 43.3 19.4 226 100-360 630-871 (1249)
196 3mmy_A MRNA export factor; mRN 93.5 3.2 0.00011 36.6 16.1 142 142-308 97-248 (368)
197 3iz6_a 40S ribosomal protein R 93.5 4.2 0.00014 36.6 20.3 231 98-360 79-329 (380)
198 3hxj_A Pyrrolo-quinoline quino 93.4 1.1 3.9E-05 39.1 12.8 175 97-313 30-211 (330)
199 3v64_C Agrin; beta propeller, 93.4 4.1 0.00014 36.5 27.3 219 97-360 44-275 (349)
200 3sfz_A APAF-1, apoptotic pepti 93.4 4.5 0.00015 42.9 19.4 69 234-313 972-1040(1249)
201 3azo_A Aminopeptidase; POP fam 93.1 5.7 0.0002 38.7 18.4 143 155-314 217-376 (662)
202 3ott_A Two-component system se 92.8 5.1 0.00017 40.1 17.8 149 142-316 73-229 (758)
203 1qks_A Cytochrome CD1 nitrite 92.7 1.9 6.7E-05 41.6 14.0 245 98-360 209-477 (567)
204 3ogk_B Coronatine-insensitive 92.5 0.047 1.6E-06 53.2 2.2 34 48-81 14-48 (592)
205 1qks_A Cytochrome CD1 nitrite 92.2 8.6 0.0003 37.1 20.5 246 97-376 166-436 (567)
206 1jmx_B Amine dehydrogenase; ox 92.1 0.68 2.3E-05 40.8 9.4 112 186-309 10-136 (349)
207 2ghs_A AGR_C_1268P; regucalcin 92.1 5.8 0.0002 34.9 16.8 189 98-313 61-266 (326)
208 3gre_A Serine/threonine-protei 91.9 7.4 0.00025 35.5 16.9 152 186-360 181-359 (437)
209 2qe8_A Uncharacterized protein 91.8 4.5 0.00015 35.9 14.5 128 234-373 27-162 (343)
210 1pby_B Quinohemoprotein amine 91.7 6 0.00021 34.2 21.2 113 100-216 4-128 (337)
211 3frx_A Guanine nucleotide-bind 91.7 4.4 0.00015 35.4 14.3 142 186-360 76-227 (319)
212 1n7d_A LDL receptor, low-densi 91.5 2.1 7E-05 42.7 12.9 172 155-360 386-571 (699)
213 3mmy_A MRNA export factor; mRN 91.4 4.3 0.00015 35.6 14.0 141 187-360 54-199 (368)
214 3dm0_A Maltose-binding peripla 91.3 7.6 0.00026 38.2 16.9 146 142-309 441-594 (694)
215 3dm0_A Maltose-binding peripla 91.1 12 0.00042 36.7 18.8 146 142-310 483-635 (694)
216 2mad_H Methylamine dehydrogena 91.1 8.6 0.00029 34.7 24.7 106 98-216 33-160 (373)
217 3e5z_A Putative gluconolactona 91.1 6.8 0.00023 33.6 18.3 185 97-309 79-288 (296)
218 3p5b_L Low density lipoprotein 91.0 9.1 0.00031 35.0 26.5 222 98-360 84-320 (400)
219 1qhu_A Protein (hemopexin); be 91.0 10 0.00035 35.4 18.4 181 142-360 158-385 (460)
220 2hz6_A Endoplasmic reticulum t 90.9 0.16 5.4E-06 46.3 3.8 145 183-371 6-156 (369)
221 4a0p_A LRP6, LRP-6, low-densit 90.9 13 0.00043 36.4 24.1 219 97-360 6-237 (628)
222 3hrp_A Uncharacterized protein 90.6 10 0.00034 34.7 26.3 197 97-314 141-361 (409)
223 3dr2_A Exported gluconolactona 90.5 4.7 0.00016 35.0 13.1 185 143-360 57-267 (305)
224 3m0c_C LDL receptor, low-densi 89.9 18 0.0006 36.5 19.8 170 156-360 405-589 (791)
225 1pby_B Quinohemoprotein amine 89.8 3 0.0001 36.2 11.4 103 203-312 11-129 (337)
226 1ijq_A LDL receptor, low-densi 89.5 10 0.00035 33.2 23.0 171 155-360 10-195 (316)
227 3lrv_A PRE-mRNA-splicing facto 89.3 11 0.00037 33.2 18.4 152 142-312 138-299 (343)
228 2xyi_A Probable histone-bindin 89.0 4.2 0.00014 37.4 12.1 103 189-307 196-309 (430)
229 2oiz_A Aromatic amine dehydrog 89.0 12 0.00042 33.4 17.4 77 287-385 265-353 (361)
230 3hxj_A Pyrrolo-quinoline quino 88.9 11 0.00037 32.7 17.8 195 97-341 107-312 (330)
231 3frx_A Guanine nucleotide-bind 88.8 11 0.00038 32.7 15.5 143 142-309 76-229 (319)
232 1yfq_A Cell cycle arrest prote 88.8 11 0.00038 32.6 19.5 219 99-345 71-314 (342)
233 3p5b_L Low density lipoprotein 88.7 14 0.00048 33.7 20.0 171 155-360 92-277 (400)
234 2ymu_A WD-40 repeat protein; u 88.6 17 0.00057 34.4 18.6 178 142-359 355-538 (577)
235 2vdu_B TRNA (guanine-N(7)-)-me 88.5 15 0.0005 33.8 20.1 151 143-312 210-398 (450)
236 3gre_A Serine/threonine-protei 88.1 15 0.00052 33.3 16.2 152 143-309 182-361 (437)
237 3pe7_A Oligogalacturonate lyas 88.0 14 0.00047 32.8 17.2 201 141-360 45-273 (388)
238 3tc9_A Hypothetical hydrolase; 87.9 2.9 0.0001 38.7 10.1 144 142-307 149-301 (430)
239 3c5m_A Oligogalacturonate lyas 87.6 15 0.0005 32.7 14.7 153 155-314 216-391 (396)
240 3c75_H MADH, methylamine dehyd 87.6 17 0.00059 33.5 15.4 108 97-215 84-212 (426)
241 2xzm_R RACK1; ribosome, transl 87.5 14 0.00048 32.4 17.6 62 186-261 87-150 (343)
242 1nr0_A Actin interacting prote 87.5 21 0.00073 34.4 16.8 184 145-360 162-355 (611)
243 1pex_A Collagenase-3, MMP-13; 87.4 11 0.00037 31.0 17.6 148 137-311 28-196 (207)
244 4ggc_A P55CDC, cell division c 87.3 12 0.0004 32.0 13.4 135 203-360 45-181 (318)
245 3oyo_A Hemopexin fold protein 85.8 8 0.00027 32.2 10.7 59 287-359 127-197 (225)
246 2xdw_A Prolyl endopeptidase; a 85.7 29 0.00099 34.2 17.7 145 154-314 258-423 (710)
247 3o4h_A Acylamino-acid-releasin 85.5 5.9 0.0002 38.0 11.3 98 205-313 134-233 (582)
248 3b7f_A Glycosyl hydrolase, BNR 85.4 21 0.00071 32.2 21.9 220 97-341 22-297 (394)
249 3tc9_A Hypothetical hydrolase; 84.8 4.3 0.00015 37.6 9.5 144 186-359 149-300 (430)
250 3iuj_A Prolyl endopeptidase; h 84.7 21 0.00072 35.2 15.1 144 154-316 258-414 (693)
251 2bkl_A Prolyl endopeptidase; m 84.4 33 0.0011 33.7 27.2 186 155-359 147-350 (695)
252 1itv_A MMP9; adaptive molecula 84.2 15 0.00052 29.7 15.1 143 138-309 12-176 (195)
253 2ecf_A Dipeptidyl peptidase IV 84.0 34 0.0012 33.6 19.4 71 139-220 116-189 (741)
254 3sov_A LRP-6, low-density lipo 83.7 22 0.00075 31.2 21.9 181 142-360 46-238 (318)
255 1qhu_A Protein (hemopexin); be 83.7 28 0.00097 32.4 18.1 175 142-359 107-330 (460)
256 2bkl_A Prolyl endopeptidase; m 83.3 29 0.00098 34.1 15.3 147 154-314 251-404 (695)
257 2ece_A 462AA long hypothetical 83.0 30 0.001 32.2 17.5 164 142-314 95-296 (462)
258 2xyi_A Probable histone-bindin 82.7 9.4 0.00032 34.9 11.0 63 287-360 243-309 (430)
259 2xbg_A YCF48-like protein; pho 82.0 26 0.00088 30.7 21.7 233 97-374 46-287 (327)
260 1yr2_A Prolyl oligopeptidase; 81.2 29 0.001 34.4 14.6 146 154-315 293-449 (741)
261 1k32_A Tricorn protease; prote 79.9 41 0.0014 34.9 15.7 140 154-314 316-468 (1045)
262 3dw8_B Serine/threonine-protei 78.9 37 0.0013 30.6 15.2 20 287-307 296-315 (447)
263 3dr2_A Exported gluconolactona 78.5 31 0.0011 29.5 15.1 184 98-305 97-304 (305)
264 3s94_A LRP-6, low-density lipo 78.3 52 0.0018 32.0 21.6 209 98-342 9-231 (619)
265 1k32_A Tricorn protease; prote 78.2 68 0.0023 33.2 17.9 140 203-360 317-461 (1045)
266 2xdw_A Prolyl endopeptidase; a 77.6 56 0.0019 32.0 21.7 187 156-360 152-368 (710)
267 2xzm_R RACK1; ribosome, transl 77.5 36 0.0012 29.7 18.4 21 287-307 224-244 (343)
268 3vu4_A KMHSV2; beta-propeller 77.5 37 0.0013 29.9 17.7 64 287-360 206-271 (355)
269 2gop_A Trilobed protease; beta 76.4 37 0.0013 29.4 14.8 101 155-268 152-259 (347)
270 3f3f_A Nucleoporin SEH1; struc 76.4 35 0.0012 29.0 17.0 108 186-309 22-145 (351)
271 2oaj_A Protein SNI1; WD40 repe 76.3 72 0.0024 32.6 16.8 193 142-360 28-242 (902)
272 3lrv_A PRE-mRNA-splicing facto 75.9 39 0.0013 29.4 24.5 105 186-309 138-246 (343)
273 2z3z_A Dipeptidyl aminopeptida 75.7 62 0.0021 31.5 27.2 148 202-360 234-391 (706)
274 2ymu_A WD-40 repeat protein; u 75.4 55 0.0019 30.8 21.5 178 142-358 314-496 (577)
275 3amr_A 3-phytase; beta-propell 75.1 46 0.0016 29.8 14.2 92 203-306 99-209 (355)
276 3o4h_A Acylamino-acid-releasin 74.7 59 0.002 30.8 16.5 131 203-360 90-227 (582)
277 2cn3_A Xyloglucanase, beta-1,4 74.1 73 0.0025 31.6 25.9 250 98-372 36-343 (737)
278 1pex_A Collagenase-3, MMP-13; 74.0 35 0.0012 27.9 15.3 140 181-360 28-192 (207)
279 1xfd_A DIP, dipeptidyl aminope 72.9 57 0.0019 31.8 13.9 57 155-218 91-149 (723)
280 2ecf_A Dipeptidyl peptidase IV 71.6 79 0.0027 30.9 20.2 107 203-314 263-375 (741)
281 2gop_A Trilobed protease; beta 71.5 49 0.0017 28.5 15.9 139 155-314 85-258 (347)
282 2qe8_A Uncharacterized protein 71.4 52 0.0018 28.8 17.1 123 186-313 27-161 (343)
283 3c7x_A Matrix metalloproteinas 71.4 39 0.0013 27.3 11.2 147 181-360 10-175 (196)
284 2j04_A TAU60, YPL007P, hypothe 70.6 78 0.0027 30.5 14.9 110 186-309 96-213 (588)
285 4hw6_A Hypothetical protein, I 69.4 47 0.0016 30.5 11.6 143 187-359 153-303 (433)
286 4hw6_A Hypothetical protein, I 69.4 53 0.0018 30.2 12.0 142 143-306 153-303 (433)
287 1fwx_A Nitrous oxide reductase 69.1 22 0.00074 34.3 9.3 258 97-376 101-441 (595)
288 3oyo_A Hemopexin fold protein 68.5 49 0.0017 27.3 15.2 145 141-307 12-198 (225)
289 3dw8_B Serine/threonine-protei 68.3 67 0.0023 28.8 15.1 22 289-310 240-261 (447)
290 4a0p_A LRP6, LRP-6, low-densit 67.9 92 0.0032 30.2 21.8 173 155-360 15-197 (628)
291 3sov_A LRP-6, low-density lipo 63.7 74 0.0025 27.7 22.2 144 142-309 90-240 (318)
292 2p9w_A MAL S 1 allergenic prot 63.2 81 0.0028 27.9 21.6 229 98-344 25-305 (334)
293 3iuj_A Prolyl endopeptidase; h 63.1 1.2E+02 0.004 29.7 20.6 102 202-314 258-366 (693)
294 3ba0_A Macrophage metalloelast 61.5 91 0.0031 27.9 16.3 148 138-312 186-355 (365)
295 2be1_A Serine/threonine-protei 61.2 27 0.00092 31.1 7.8 56 252-312 21-81 (339)
296 2mad_H Methylamine dehydrogena 59.4 97 0.0033 27.6 21.0 70 234-309 278-352 (373)
297 3c7x_A Matrix metalloproteinas 59.0 69 0.0024 25.8 13.6 141 138-309 11-177 (196)
298 1su3_A Interstitial collagenas 58.1 1.2E+02 0.004 28.1 15.9 147 137-312 267-437 (450)
299 1xfd_A DIP, dipeptidyl aminope 57.6 1.4E+02 0.0048 28.9 14.5 66 155-220 37-108 (723)
300 3s94_A LRP-6, low-density lipo 57.0 1.4E+02 0.0049 28.8 25.9 170 142-343 360-540 (619)
301 2xbg_A YCF48-like protein; pho 56.9 98 0.0034 26.8 21.5 222 98-358 90-320 (327)
302 3lp9_A LS-24; SEED albumin, pl 54.2 76 0.0026 26.2 9.0 100 140-261 70-202 (227)
303 1yr2_A Prolyl oligopeptidase; 51.6 1.9E+02 0.0063 28.5 21.3 102 202-313 293-401 (741)
304 3qqz_A Putative uncharacterize 51.3 1.1E+02 0.0037 25.8 10.0 71 227-309 28-102 (255)
305 2g8s_A Glucose/sorbosone dehyd 49.7 96 0.0033 27.4 9.7 72 287-360 80-173 (353)
306 3b7f_A Glycosyl hydrolase, BNR 49.1 1.4E+02 0.0049 26.5 24.8 201 97-318 67-334 (394)
307 2ece_A 462AA long hypothetical 49.1 1.7E+02 0.0057 27.2 13.0 71 186-263 95-176 (462)
308 4h5i_A Guanine nucleotide-exch 48.7 1.4E+02 0.0048 26.2 15.6 180 107-307 157-343 (365)
309 2ism_A Putative oxidoreductase 48.5 1.3E+02 0.0045 26.5 10.4 115 234-360 41-178 (352)
310 3c75_H MADH, methylamine dehyd 47.7 1.7E+02 0.0057 26.8 12.9 70 234-310 330-405 (426)
311 1fwx_A Nitrous oxide reductase 46.7 2.1E+02 0.0071 27.6 12.6 198 142-360 101-361 (595)
312 3sjl_D Methylamine dehydrogena 45.5 1.7E+02 0.0059 26.3 20.1 62 287-360 291-363 (386)
313 2oaj_A Protein SNI1; WD40 repe 44.2 2E+02 0.007 29.2 12.2 104 186-310 28-132 (902)
314 2be1_A Serine/threonine-protei 42.8 14 0.00047 33.0 2.8 102 204-312 21-137 (339)
315 3sre_A PON1, serum paraoxonase 42.3 1.8E+02 0.0063 25.8 13.6 142 154-307 82-252 (355)
316 1nr0_A Actin interacting prote 41.7 2.4E+02 0.0081 26.8 22.6 110 189-312 162-275 (611)
317 2xe4_A Oligopeptidase B; hydro 41.3 2.7E+02 0.0093 27.4 16.8 155 144-314 284-465 (751)
318 1ck7_A Protein (gelatinase A); 40.5 1.6E+02 0.0054 28.7 10.0 144 137-308 448-616 (631)
319 1su3_A Interstitial collagenas 39.8 2.3E+02 0.0078 26.1 15.8 60 287-360 367-432 (450)
320 3q6k_A 43.2 kDa salivary prote 39.8 1.5E+02 0.0052 26.7 9.2 65 250-314 122-198 (381)
321 3k6s_A Integrin alpha-X; cell 39.3 1.7E+02 0.0059 30.6 10.7 155 227-388 336-509 (1095)
322 1jof_A Carboxy-CIS,CIS-muconat 38.0 2E+02 0.0069 25.0 19.9 222 142-389 94-365 (365)
323 3q6k_A 43.2 kDa salivary prote 37.9 1.9E+02 0.0067 26.0 9.6 65 298-373 123-198 (381)
324 2kwv_A RAD30 homolog B, DNA po 37.9 19 0.00064 21.3 1.8 25 41-65 15-39 (48)
325 1gen_A Gelatinase A; hydrolase 36.6 1.7E+02 0.0059 23.8 16.4 143 138-309 36-204 (218)
326 3vu4_A KMHSV2; beta-propeller 36.5 2.1E+02 0.0072 24.8 21.1 65 234-308 206-272 (355)
327 1cru_A Protein (soluble quinop 35.8 2.6E+02 0.0089 25.6 10.6 102 234-344 37-164 (454)
328 1hxn_A Hemopexin, HPX; heme, b 35.6 1.8E+02 0.0062 23.7 15.2 141 185-360 27-197 (219)
329 2oiz_A Aromatic amine dehydrog 34.7 96 0.0033 27.3 7.2 118 187-309 16-142 (361)
330 2w18_A PALB2, fancn, partner a 34.6 2.5E+02 0.0085 25.0 20.3 152 186-358 192-355 (356)
331 3a0f_A Xyloglucanase; beta-pro 34.2 3.6E+02 0.012 26.7 25.4 207 98-318 34-295 (763)
332 3kya_A Putative phosphatase; s 30.0 3.5E+02 0.012 25.3 19.2 199 97-314 151-416 (496)
333 2oit_A Nucleoporin 214KDA; NH2 28.1 2.6E+02 0.0088 25.3 9.1 131 234-375 161-293 (434)
334 3ba0_A Macrophage metalloelast 27.9 3.2E+02 0.011 24.3 16.0 60 287-360 284-350 (365)
335 3qqz_A Putative uncharacterize 27.0 2.8E+02 0.0095 23.2 21.7 194 142-360 38-253 (255)
336 3a9g_A Putative uncharacterize 26.1 3.3E+02 0.011 23.8 10.6 115 233-360 38-178 (354)
337 3ju4_A Endo-N-acetylneuraminid 24.2 4.2E+02 0.014 24.3 12.4 124 211-342 268-405 (670)
338 3kya_A Putative phosphatase; s 21.4 5E+02 0.017 24.2 12.4 107 186-306 151-277 (496)
339 3sjl_D Methylamine dehydrogena 20.3 4.7E+02 0.016 23.4 20.1 108 97-215 44-172 (386)
340 2dae_A KIAA0733 protein; mitog 20.0 50 0.0017 21.6 1.6 19 47-65 21-39 (75)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=323.01 Aligned_cols=272 Identities=20% Similarity=0.280 Sum_probs=235.7
Q ss_pred ccEEEEEeC---CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc--cCCeEEEEECCCCcEeecC
Q 016416 97 EHWVYLVCD---PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL--FDFAIWKYSLVFRSWMKCE 171 (390)
Q Consensus 97 ~~~l~~~~~---~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~--~~~~~~~yd~~t~~W~~~~ 171 (390)
.+.||++|| ..+++.||+.+++|..++++|.++.. +++++.++.||++||.. ..+++++||+.+++|+.++
T Consensus 11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~ 86 (306)
T 3ii7_A 11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD----AACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL 86 (306)
T ss_dssp CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS----CEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred cceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce----eEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence 467999987 57899999999999999999886643 45677899999999965 4478999999999999999
Q ss_pred CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCc---
Q 016416 172 GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTV--- 248 (390)
Q Consensus 172 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--- 248 (390)
++|.+|..|++++++++||++||.+......+++++||+.+++|+.++++|.+|..|+++.++++||++||......
T Consensus 87 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 87 GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCE
T ss_pred CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccc
Confidence 99999999999999999999999874445688999999999999999999999999999999999999999876442
Q ss_pred cCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCCccccCC
Q 016416 249 SLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLPVRADLS 323 (390)
Q Consensus 249 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~~~~ 323 (390)
..+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++.+|.++.
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-- 239 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIE-----ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV-- 239 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS--
T ss_pred ccceEEEeCCCCCeEEECCCccc-----hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc--
Confidence 27889999999999999998887 45677899999999999984 4789999999999999999887654
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeeeec
Q 016416 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLG 389 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 389 (390)
++++++++++|||+||.++.. ...++++||+++ ++|+.++++|..+..+.++++.+
T Consensus 240 ---~~~~~~~~~~i~v~GG~~~~~-~~~~~~~yd~~~------~~W~~~~~~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 240 ---TVKCAAVGSIVYVLAGFQGVG-RLGHILEYNTET------DKWVANSKVRAFPVTSCLICVVD 295 (306)
T ss_dssp ---CCEEEEETTEEEEEECBCSSS-BCCEEEEEETTT------TEEEEEEEEECCSCTTCEEEEEE
T ss_pred ---ceeEEEECCEEEEEeCcCCCe-eeeeEEEEcCCC------CeEEeCCCcccccceeEEEEECC
Confidence 356778899999999987543 556899999999 89999999987777666666554
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=5.6e-43 Score=319.45 Aligned_cols=269 Identities=22% Similarity=0.348 Sum_probs=232.6
Q ss_pred ccccEEEEEeC-----CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc-------cCCeEEEEEC
Q 016416 95 IVEHWVYLVCD-----PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL-------FDFAIWKYSL 162 (390)
Q Consensus 95 ~~~~~l~~~~~-----~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~-------~~~~~~~yd~ 162 (390)
..++.||++|| ..++++||+.+++|..++++|.++.. ++++..++.||++||.. ..+++++||+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG----LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc----ceEEEECCEEEEECCCcCCCCCCeecceEEEECC
Confidence 34688999987 47899999999999999999887653 34677899999999972 3468999999
Q ss_pred CCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEec
Q 016416 163 VFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGG 242 (390)
Q Consensus 163 ~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG 242 (390)
.+++|+.++++|.+|..+++++++++||++||.... ...+++++||+.+++|+.++++|.+|..++++.++++||++||
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 176 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG 176 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeC
Confidence 999999999999999999999999999999998754 3578899999999999999999999999999999999999999
Q ss_pred ccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCC
Q 016416 243 MSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLP 317 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~ 317 (390)
.+... ..+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++.+|
T Consensus 177 ~~~~~-~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 177 FDGTN-RLNSAECYYPERNEWRMITAMNT-----IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp BCSSC-BCCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred CCCCC-cCceEEEEeCCCCeEeeCCCCCC-----ccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 87654 47889999999999999998887 45667889999999999985 478999999999999999888
Q ss_pred ccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeee
Q 016416 318 VRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCA 386 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~ 386 (390)
.++. ++++++++++|||+||.++. ....++++||+++ ++|+.+++||..+..+.+|+
T Consensus 251 ~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~------~~W~~~~~~p~~r~~~~~~~ 307 (308)
T 1zgk_A 251 HRRS-----ALGITVHQGRIYVLGGYDGH-TFLDSVECYDPDT------DTWSEVTRMTSGRSGVGVAV 307 (308)
T ss_dssp SCCB-----SCEEEEETTEEEEECCBCSS-CBCCEEEEEETTT------TEEEEEEECSSCCBSCEEEE
T ss_pred CCcc-----ceEEEEECCEEEEEcCcCCC-cccceEEEEcCCC------CEEeecCCCCCCcccceeEe
Confidence 7654 35677889999999998753 3456899999999 89999999987766655544
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.4e-43 Score=317.04 Aligned_cols=269 Identities=21% Similarity=0.355 Sum_probs=230.7
Q ss_pred ccEEEEEeC-----CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---cCCeEEEEECCCCcEe
Q 016416 97 EHWVYLVCD-----PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL---FDFAIWKYSLVFRSWM 168 (390)
Q Consensus 97 ~~~l~~~~~-----~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---~~~~~~~yd~~t~~W~ 168 (390)
++.+|++|| ..++++||+.+++|..++++|.++.. +.++..++.||++||.. ..+++++||+.+++|+
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR----AGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS----CEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc----ceEEEECCEEEEEeCcCCCccccceEEECCCCCcee
Confidence 567999986 36789999999999999999886643 34677899999999965 3468999999999999
Q ss_pred ecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCC-
Q 016416 169 KCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPT- 247 (390)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~- 247 (390)
.++++|.+|..|++++++++||++||.... ...+++++||+.+++|+.++++|.+|..++++.++++||++||.+...
T Consensus 91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR 169 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTT
T ss_pred eCCCCCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCC
Confidence 999999999999999999999999998754 357899999999999999999999999999999999999999987643
Q ss_pred ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCCccccC
Q 016416 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLPVRADL 322 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~~~ 322 (390)
...+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++.+|.++.
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~- 243 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMST-----RRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR- 243 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB-
T ss_pred ccccEEEEEeCCCCcEEECCCCcc-----ccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc-
Confidence 357889999999999999998887 45667899999999999984 4689999999999999998887654
Q ss_pred CCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec-ccCccCeEEeeeee
Q 016416 323 SNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA-EKQHVGVFVYNCAV 387 (390)
Q Consensus 323 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~-~~p~~~~~~~~~~~ 387 (390)
+++++.++++||++||.++. ....++++||+++ ++|+.++ .||..+..+.+|++
T Consensus 244 ----~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~------~~W~~~~~~~~~~r~~~~~~~~ 298 (302)
T 2xn4_A 244 ----NAGVCAVNGLLYVVGGDDGS-CNLASVEYYNPTT------DKWTVVSSCMSTGRSYAGVTVI 298 (302)
T ss_dssp ----SCEEEEETTEEEEECCBCSS-SBCCCEEEEETTT------TEEEECSSCCSSCCBSCEEEEE
T ss_pred ----cCeEEEECCEEEEECCcCCC-cccccEEEEcCCC------CeEEECCcccCcccccceEEEe
Confidence 35677889999999998654 2456799999999 8999997 78766665555544
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=6.8e-42 Score=311.16 Aligned_cols=269 Identities=20% Similarity=0.347 Sum_probs=232.0
Q ss_pred cccEEEEEeC-------CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---cCCeEEEEECCCC
Q 016416 96 VEHWVYLVCD-------PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL---FDFAIWKYSLVFR 165 (390)
Q Consensus 96 ~~~~l~~~~~-------~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---~~~~~~~yd~~t~ 165 (390)
.++.+|++|| ..++++||+.+++|..++++|.++.. ++++..++.||++||.. ..+++++||+.++
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY----VASVSLHDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc----ccEEEECCEEEEEcCCCCCccCceEEEEECCCC
Confidence 4678999987 46889999999999999988876543 45677899999999965 3468999999999
Q ss_pred c---EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEec
Q 016416 166 S---WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGG 242 (390)
Q Consensus 166 ~---W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG 242 (390)
+ |+.++++|.+|..|++++++++||++||..... ..+++++||+.+++|+.++++|.+|..+++++++++||++||
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 167 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGG 167 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECC
T ss_pred CCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECC
Confidence 9 999999999999999999999999999987543 578999999999999999999999999999999999999999
Q ss_pred ccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCC
Q 016416 243 MSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLP 317 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~ 317 (390)
.+... ..+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++.+|
T Consensus 168 ~~~~~-~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 168 YDGLN-ILNSVEKYDPHTGHWTNVTPMAT-----KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp BCSSC-BCCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred CCCCc-ccceEEEEeCCCCcEEeCCCCCc-----ccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 87643 57889999999999999998887 45667899999999999985 578999999999999999888
Q ss_pred ccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeee
Q 016416 318 VRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAV 387 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 387 (390)
.++. +++++.++++||++||..+. ....++++||+++ ++|+.++.||..+..+.+|++
T Consensus 242 ~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~------~~W~~~~~~~~~r~~~~~~~~ 299 (301)
T 2vpj_A 242 TPRC-----YVGATVLRGRLYAIAGYDGN-SLLSSIECYDPII------DSWEVVTSMGTQRCDAGVCVL 299 (301)
T ss_dssp SCCB-----SCEEEEETTEEEEECCBCSS-SBEEEEEEEETTT------TEEEEEEEEEEEEESCEEEEE
T ss_pred Cccc-----ceeEEEECCEEEEEcCcCCC-cccccEEEEcCCC------CeEEEcCCCCcccccceEEEe
Confidence 7654 35677889999999997654 3567899999999 799999999776655555544
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=315.76 Aligned_cols=259 Identities=17% Similarity=0.300 Sum_probs=217.4
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---------cCCeEEEEECCCCcE
Q 016416 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL---------FDFAIWKYSLVFRSW 167 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---------~~~~~~~yd~~t~~W 167 (390)
++.|+++|+ .++++|||.+++|.. +++|.+. .+..+++++.++.||++||.. ..+++++||+.+++|
T Consensus 4 ~~~l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 4 QDLIFMISE-EGAVAYDPAANECYC-ASLSSQV--PKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEEEEEET-TEEEEEETTTTEEEE-EECCCCS--CSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred ceEEEEEcC-CceEEECCCCCeEec-CCCCCCC--CccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 456788876 789999999999986 6665432 122345667799999999952 124589999999999
Q ss_pred eecCCCCCCCcceeeeeeCCEEEEEeccCC--CCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccC
Q 016416 168 MKCEGMNHPRCLFGSGSLGSIAIIAGGSDK--NGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSS 245 (390)
Q Consensus 168 ~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 245 (390)
+.++++|.+|..|++++++++||++||... .....+++++||+.+++|+.++++|.+|..|+++.++++||++||...
T Consensus 80 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 80 LGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp EECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCT
T ss_pred EECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCC
Confidence 999999999999999999999999999752 234688999999999999999999999999999999999999999965
Q ss_pred CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCCccc
Q 016416 246 PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLPVRA 320 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~ 320 (390)
.....+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++++|.++
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 234 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQT-----ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER 234 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred CCcccceEEEEeCCCCeEEECCCCCC-----chhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 55678899999999999999999887 56677899999999999984 358999999999999999988776
Q ss_pred cCCCcceeEEEEeCCEEEEEcCCCCC----C----CCeEEEeeecCCCCCCCCCCceEEeccc
Q 016416 321 DLSNGWGLAFKACGNELLVVGGQRGP----E----GENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 321 ~~~~~~~~~~~~~~~~lyv~GG~~~~----~----~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
. ++++++++++|||+||..+. . ....++++||+++ ++|+.+.+.
T Consensus 235 ~-----~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~------~~W~~~~~~ 286 (315)
T 4asc_A 235 S-----SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE------KKWEGVLRE 286 (315)
T ss_dssp B-----SCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT------TEEEEEESC
T ss_pred c-----ceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCC------ChhhhhccC
Confidence 4 35677899999999997532 1 2357899999999 799999433
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=2.8e-41 Score=309.59 Aligned_cols=268 Identities=16% Similarity=0.294 Sum_probs=220.1
Q ss_pred cccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---------cCCeEEEEECCCCc
Q 016416 96 VEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL---------FDFAIWKYSLVFRS 166 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---------~~~~~~~yd~~t~~ 166 (390)
.++.+|++|+ ..+++|||.+++|.. ++++.+. .+..++++..++.||++||.. ..+.+++||+.+++
T Consensus 14 ~~~~i~~~GG-~~~~~yd~~~~~W~~-~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (318)
T 2woz_A 14 VKDLILLVND-TAAVAYDPMENECYL-TALAEQI--PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE 89 (318)
T ss_dssp EEEEEEEECS-SEEEEEETTTTEEEE-EEECTTS--CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred ecchhhhccc-cceEEECCCCCceec-ccCCccC--CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence 3567888876 468999999999988 3444321 122245667799999999942 12348999999999
Q ss_pred EeecCCCCCCCcceeeeeeCCEEEEEeccCC-CCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccC
Q 016416 167 WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDK-NGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSS 245 (390)
Q Consensus 167 W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 245 (390)
|+.++++|.+|..|++++++++||++||... .....+++++||+.+++|+.++++|.+|..|++++++++||++||...
T Consensus 90 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 169 (318)
T 2woz_A 90 WVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTD 169 (318)
T ss_dssp EEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEES
T ss_pred EEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCC
Confidence 9999999999999999999999999999863 334678999999999999999999999999999999999999999866
Q ss_pred CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCCccc
Q 016416 246 PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLPVRA 320 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~ 320 (390)
.....+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||+++++|+.++.+|.++
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 244 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKT-----PRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER 244 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC
T ss_pred CCCccceEEEEcCCCCEEEECCCCCC-----CcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 55568899999999999999998887 45667889999999999983 468999999999999999988765
Q ss_pred cCCCcceeEEEEeCCEEEEEcCCCCCC--------CCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeee
Q 016416 321 DLSNGWGLAFKACGNELLVVGGQRGPE--------GENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNC 385 (390)
Q Consensus 321 ~~~~~~~~~~~~~~~~lyv~GG~~~~~--------~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 385 (390)
. +++++.++++||++||..... ....++++||+++ ++|+.+ +|..+..+.++
T Consensus 245 ~-----~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~------~~W~~~--~~~~r~~~~~~ 304 (318)
T 2woz_A 245 S-----SISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK------KEWAGM--LKEIRYASGAS 304 (318)
T ss_dssp B-----SCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT------TEEEEE--ESCCGGGTTCE
T ss_pred c-----ceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC------CEehhh--cccccccccce
Confidence 4 356788999999999986521 2356799999999 899999 54444444333
No 7
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=4.2e-39 Score=299.90 Aligned_cols=264 Identities=19% Similarity=0.193 Sum_probs=212.4
Q ss_pred ccEEEEEeC--CCeeEEEecC--CCceeeCCCCC-CCcccCCCCeeEEEeCCEEEEEccc-c-------cCCeEEEEECC
Q 016416 97 EHWVYLVCD--PRGWEAFDPM--KKKWMALPKIP-CDECFNHADKESLAVGSELLVFGRE-L-------FDFAIWKYSLV 163 (390)
Q Consensus 97 ~~~l~~~~~--~~~~~~~d~~--~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~iy~~Gg~-~-------~~~~~~~yd~~ 163 (390)
++.||++|| ..++++||+. +++|..++++| .++.. +++++.+++||++||. . ..+++++||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~----~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ----ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS----CEEEEETTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc----ceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 789999986 5789999998 48999999999 55543 4567789999999997 2 24689999999
Q ss_pred CCcEeecCCCC-CCCcceeeeeeCCEEEEEeccCCCC---------------------------------CccceEEEEE
Q 016416 164 FRSWMKCEGMN-HPRCLFGSGSLGSIAIIAGGSDKNG---------------------------------HVLKSAELYD 209 (390)
Q Consensus 164 t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~---------------------------------~~~~~~~~yd 209 (390)
+++|+.+++++ .+|..|++++++++||++||..... ...+++++||
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 99999999987 8999999999999999999976421 1357899999
Q ss_pred CCCCcEEEcCCCCCCCcC-ceEEEECCEEEEEecccCCCccCceEEEEeC--CCCceEEccCCCCCCCCcCCCCCEEEEE
Q 016416 210 STTGRWEMLPSMHSPRRL-CSGFFMDGKFYVIGGMSSPTVSLTCGEEFDL--ETRKWRKIEGMYPNVNRAAQAPPLVAVV 286 (390)
Q Consensus 210 ~~t~~W~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 286 (390)
+.+++|+.++++|.++.. ++++.++++||++||..........+++||+ .+++|+.+++++.++ .+..+++++.
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~---~~~~~~~~~~ 251 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD---GVAGGFAGIS 251 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT---CCBSCEEEEE
T ss_pred CCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc---ccccceEEEE
Confidence 999999999999987554 8889999999999998765556778999986 999999999886643 3446678999
Q ss_pred CCEEEEEecCC----------------------CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCC
Q 016416 287 DNQLYAVEYLT----------------------NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQR 344 (390)
Q Consensus 287 ~g~l~v~gg~~----------------------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 344 (390)
+++||++||.. .++++||+++++|+.++.+|.++.. ++++.++++|||+||.+
T Consensus 252 ~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-----~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY-----GVSLPWNNSLLIIGGET 326 (357)
T ss_dssp TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS-----SEEEEETTEEEEEEEEC
T ss_pred CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc-----ceeEEeCCEEEEEeeeC
Confidence 99999999842 3689999999999999998877642 56678999999999988
Q ss_pred CCCCCeEEEeeecCCCCCCCCCCceEEecccCcc
Q 016416 345 GPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHV 378 (390)
Q Consensus 345 ~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~ 378 (390)
.......+++.++.++ ++|.+..+.|+.
T Consensus 327 ~~~~~~~~v~~l~~~~------~~~~~~~~~~~~ 354 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKD------NKVTVQNLEHHH 354 (357)
T ss_dssp GGGCEEEEEEEEEC-C------CSCEEEC-----
T ss_pred CCCCEeeeEEEEEEcC------cEeEeeeccccc
Confidence 7665678899999998 799999888753
No 8
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=284.72 Aligned_cols=226 Identities=19% Similarity=0.224 Sum_probs=198.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
.+.||++||....+++++||+.+++|..++++|.+|..|++++++++||++||.. ....+++++||+.+++|+.++++
T Consensus 11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECC
T ss_pred cceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCC
Confidence 4789999998778899999999999999999999999999999999999999987 34689999999999999999999
Q ss_pred CCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----
Q 016416 222 HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL----- 296 (390)
Q Consensus 222 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~----- 296 (390)
|.+|..|+++.++++||++||.+......+++++||+.+++|+.++++|. +|..+++++++++||++||.
T Consensus 89 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 89 PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-----QRCSHGMVEANGLIYVCGGSLGNNV 163 (306)
T ss_dssp SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCEESCTT
T ss_pred CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-----CcceeEEEEECCEEEEECCCCCCCC
Confidence 99999999999999999999997555568899999999999999999887 45667889999999999973
Q ss_pred ----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEe
Q 016416 297 ----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 297 ----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
.+++++||+++++|+.++++|.++. +++++.++++||++||.... ....++++||+++ ++|+.+
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~~------~~W~~~ 231 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARK-----NHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKL------NEWKMV 231 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCEETT-EEBCCEEEEETTT------TEEEEC
T ss_pred cccccceEEEeCCCCCeEEECCCccchhh-----cceEEEECCEEEEEeCCCCC-CCCceEEEeeCCC------CcEEEC
Confidence 6789999999999999998887654 36677889999999997654 3456799999999 799999
Q ss_pred cccCccCeEEeeee
Q 016416 373 AEKQHVGVFVYNCA 386 (390)
Q Consensus 373 ~~~p~~~~~~~~~~ 386 (390)
+++|..+..+.++.
T Consensus 232 ~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 232 SPMPWKGVTVKCAA 245 (306)
T ss_dssp CCCSCCBSCCEEEE
T ss_pred CCCCCCccceeEEE
Confidence 99987665554443
No 9
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.1e-37 Score=281.38 Aligned_cols=231 Identities=19% Similarity=0.312 Sum_probs=197.5
Q ss_pred eEEEeCCEEEEEccc--ccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccC---CCCCccceEEEEECC
Q 016416 137 ESLAVGSELLVFGRE--LFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSD---KNGHVLKSAELYDST 211 (390)
Q Consensus 137 ~~~~~~~~iy~~Gg~--~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~---~~~~~~~~~~~yd~~ 211 (390)
.++..++.||++||. ...+++++||+.+++|..++++|.+|..+++++++++||++||.. ......+++++||+.
T Consensus 19 ~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 19 HAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp --CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 356779999999995 344789999999999999999999999999999999999999983 222357889999999
Q ss_pred CCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEE
Q 016416 212 TGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLY 291 (390)
Q Consensus 212 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 291 (390)
+++|+.++++|.+|..+++++++++||++||.+.. ..++++++||+.+++|+.++++|. +|..+++++++++||
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLT-----RRIGVGVAVLNRLLY 172 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEE
T ss_pred CCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCc-----cccceEEEEECCEEE
Confidence 99999999999999999999999999999998764 357889999999999999999887 456678899999999
Q ss_pred EEecC-----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCC
Q 016416 292 AVEYL-----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGT 366 (390)
Q Consensus 292 v~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~ 366 (390)
++||. .+++++||+.+++|+.++.+|.++. +++++.++++|||+||..+. ....++++||+++
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~~------ 240 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-----GAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVET------ 240 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCSS-SBCCCEEEEETTT------
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-----cceEEEECCEEEEEeCCCCC-CccceEEEEeCCC------
Confidence 99984 5789999999999999999887654 35677889999999998754 3456799999999
Q ss_pred CceEEecccCccCeEEeee
Q 016416 367 LDWKVLAEKQHVGVFVYNC 385 (390)
Q Consensus 367 ~~W~~~~~~p~~~~~~~~~ 385 (390)
++|+.++++|..+..+.++
T Consensus 241 ~~W~~~~~~p~~r~~~~~~ 259 (308)
T 1zgk_A 241 ETWTFVAPMKHRRSALGIT 259 (308)
T ss_dssp TEEEECCCCSSCCBSCEEE
T ss_pred CcEEECCCCCCCccceEEE
Confidence 7999999997666544443
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=276.96 Aligned_cols=228 Identities=21% Similarity=0.417 Sum_probs=195.9
Q ss_pred EEeCCEEEEEcccc--cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016416 139 LAVGSELLVFGREL--FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~--~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
+..++.||++||.. ..+++++||+.+++|..++++|.+|..|+++.++++||++||.... ...+++++||+.+++|+
T Consensus 12 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 12 MNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGS-LRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp ---CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSS-SBCCCEEEEETTTTEEE
T ss_pred cCCCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCC-ccccceEEECCCCCcee
Confidence 45688999999964 3468999999999999999999999999999999999999998754 35789999999999999
Q ss_pred EcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC
Q 016416 217 MLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL 296 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~ 296 (390)
.++++|.+|..|++++++++||++||.+... .++++++||+.+++|+.++++|. +|..+++++++++||++||.
T Consensus 91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~ 164 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNT-----RRSSVGVGVVGGLLYAVGGY 164 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSS-----CCBSCEEEEETTEEEEECCE
T ss_pred eCCCCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCC-----cccCceEEEECCEEEEEeCC
Confidence 9999999999999999999999999987643 57889999999999999999887 45667889999999999983
Q ss_pred -------CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCce
Q 016416 297 -------TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDW 369 (390)
Q Consensus 297 -------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W 369 (390)
.+++++||+.+++|+.++.+|.++. ++++++++++||++||.++. ....++++||+++ ++|
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~------~~W 232 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRS-----GAGVGVLNNLLYAVGGHDGP-LVRKSVEVYDPTT------NAW 232 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBSSS-SBCCCEEEEETTT------TEE
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccc-----cccEEEECCEEEEECCCCCC-cccceEEEEeCCC------CCE
Confidence 5789999999999999998887654 35677899999999998753 3456799999999 799
Q ss_pred EEecccCccCeEEeee
Q 016416 370 KVLAEKQHVGVFVYNC 385 (390)
Q Consensus 370 ~~~~~~p~~~~~~~~~ 385 (390)
+.++++|..+..+..+
T Consensus 233 ~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 233 RQVADMNMCRRNAGVC 248 (302)
T ss_dssp EEECCCSSCCBSCEEE
T ss_pred eeCCCCCCccccCeEE
Confidence 9999998766554443
No 11
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.9e-36 Score=281.99 Aligned_cols=247 Identities=17% Similarity=0.150 Sum_probs=195.8
Q ss_pred eCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECC--CCcEeecCCCC-CCCcceeeeeeCCEEEEEecc-C
Q 016416 121 ALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLV--FRSWMKCEGMN-HPRCLFGSGSLGSIAIIAGGS-D 196 (390)
Q Consensus 121 ~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~-~ 196 (390)
.+++||.++.. +.++..++.||++||.. .+++++||+. +++|+.++++| .+|..|++++++++||++||. .
T Consensus 2 ~l~~lP~~r~~----~~~~~~~~~iyv~GG~~-~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~ 76 (357)
T 2uvk_A 2 VLPETPVPFKS----GTGAIDNDTVYIGLGSA-GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGK 76 (357)
T ss_dssp CSCCCSSCCCS----CEEEEETTEEEEECGGG-TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEE
T ss_pred CCCCCCccccc----eEEEEECCEEEEEeCcC-CCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCC
Confidence 46778876643 34566699999999976 3589999998 49999999999 899999999999999999998 2
Q ss_pred ---CCCCccceEEEEECCCCcEEEcCCCC-CCCcCceEEEECCEEEEEecccCCC-------------------------
Q 016416 197 ---KNGHVLKSAELYDSTTGRWEMLPSMH-SPRRLCSGFFMDGKFYVIGGMSSPT------------------------- 247 (390)
Q Consensus 197 ---~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~------------------------- 247 (390)
......+++++||+.+++|+.+++|+ .+|..+++++++++||++||.+...
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY 156 (357)
T ss_dssp CTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhh
Confidence 12235789999999999999999998 8899999999999999999976421
Q ss_pred --------ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC------CCeEEEEeC--CCCceE
Q 016416 248 --------VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL------TNMVKKYDK--LKNTWD 311 (390)
Q Consensus 248 --------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~------~~~v~~yd~--~~~~W~ 311 (390)
..++++++||+.+++|+.++++|.+ .+..+++++.+++||++||. ...+++||+ ++++|+
T Consensus 157 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 157 FDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWY----GTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN 232 (357)
T ss_dssp HSSCGGGGCCCCEEEEEETTTTEEEEEEECSSC----CCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred ccccccccCCcccEEEEeCCCCcEEECCCCCCC----CcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence 1357899999999999999888763 23346789999999999983 578999976 999999
Q ss_pred EccCCCccccCCCcceeEEEEeCCEEEEEcCCCCC----------------CCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016416 312 VLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGP----------------EGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 312 ~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~----------------~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
.++.+|.++.. .++++++++++|||+||.... .....++++||+++ ++|+.++.+
T Consensus 233 ~~~~~~~~~~~---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~------~~W~~~~~~ 303 (357)
T 2uvk_A 233 KLAPVSSPDGV---AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN------GKWDKSGEL 303 (357)
T ss_dssp ECCCSSTTTCC---BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---------CEEEEEC
T ss_pred ecCCCCCCccc---ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC------CceeeCCCC
Confidence 99988765432 346788899999999996532 11235789999998 899999999
Q ss_pred CccCeEEeee
Q 016416 376 QHVGVFVYNC 385 (390)
Q Consensus 376 p~~~~~~~~~ 385 (390)
|..+..+.++
T Consensus 304 p~~r~~~~~~ 313 (357)
T 2uvk_A 304 SQGRAYGVSL 313 (357)
T ss_dssp SSCCBSSEEE
T ss_pred CCCcccceeE
Confidence 8766654443
No 12
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=271.49 Aligned_cols=228 Identities=21% Similarity=0.329 Sum_probs=196.8
Q ss_pred EeCCEEEEEcc-cc---cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-
Q 016416 140 AVGSELLVFGR-EL---FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR- 214 (390)
Q Consensus 140 ~~~~~iy~~Gg-~~---~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~- 214 (390)
..++.||++|| .. ..+++++||+.+++|..++++|.+|..|+++.++++||++||..+. ...+++++||+.+++
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGR-SRLSSVECLDYTADED 90 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTCCTT
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCC-ccCceEEEEECCCCCC
Confidence 35789999999 32 4578999999999999999999999999999999999999998743 367899999999999
Q ss_pred --EEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEE
Q 016416 215 --WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYA 292 (390)
Q Consensus 215 --W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 292 (390)
|+.++++|.+|..++++.++++||++||..... ..+++++||+.+++|+.++++|. +|..+++++++++||+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQT-----AREGAGLVVASGVIYC 164 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSS-----CCBSCEEEEETTEEEE
T ss_pred CeeEECCCCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCC-----CcccceEEEECCEEEE
Confidence 999999999999999999999999999987643 47899999999999999998887 4566788999999999
Q ss_pred EecC-----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCC
Q 016416 293 VEYL-----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTL 367 (390)
Q Consensus 293 ~gg~-----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~ 367 (390)
+||. .+++++||+.+++|+.++.+|.++. +++++.++++||++||..+.. ...++++||+++ +
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~------~ 232 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-----GAGVALLNDHIYVVGGFDGTA-HLSSVEAYNIRT------D 232 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBCSSS-BCCCEEEEETTT------T
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-----cceEEEECCEEEEEeCCCCCc-ccceEEEEeCCC------C
Confidence 9984 5789999999999999998887654 366778999999999987543 356799999999 7
Q ss_pred ceEEecccCccCeEEeeee
Q 016416 368 DWKVLAEKQHVGVFVYNCA 386 (390)
Q Consensus 368 ~W~~~~~~p~~~~~~~~~~ 386 (390)
+|+.++.+|..+..+.++.
T Consensus 233 ~W~~~~~~p~~r~~~~~~~ 251 (301)
T 2vpj_A 233 SWTTVTSMTTPRCYVGATV 251 (301)
T ss_dssp EEEEECCCSSCCBSCEEEE
T ss_pred cEEECCCCCCcccceeEEE
Confidence 9999999987665554443
No 13
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=272.77 Aligned_cols=223 Identities=15% Similarity=0.156 Sum_probs=189.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCC--CCCCcceeeeeeCCEEEEEeccC-----CCCCccceEEEEECCCCc
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM--NHPRCLFGSGSLGSIAIIAGGSD-----KNGHVLKSAELYDSTTGR 214 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~--~~~r~~~~~~~~~~~lyv~GG~~-----~~~~~~~~~~~yd~~t~~ 214 (390)
.+.||++|| +++++|||.+++|.. +++ |.+|..|++++++++||++||.. ......+++++||+.+++
T Consensus 4 ~~~l~~~GG----~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 4 QDLIFMISE----EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEEEEET----TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred ceEEEEEcC----CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 357889998 589999999999986 555 45899999999999999999962 122245669999999999
Q ss_pred EEEcCCCCCCCcCceEEEECCEEEEEecccC--CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEE
Q 016416 215 WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSS--PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYA 292 (390)
Q Consensus 215 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 292 (390)
|+.++++|.+|..|+++.++++||++||.+. .....+++++||+.+++|+.++++|. +|..+++++++++||+
T Consensus 79 W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv 153 (315)
T 4asc_A 79 WLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY-----VVYGHTVLSHMDLVYV 153 (315)
T ss_dssp EEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEE
T ss_pred EEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC-----cccceeEEEECCEEEE
Confidence 9999999999999999999999999999752 34568899999999999999999887 5667789999999999
Q ss_pred EecC------CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCC
Q 016416 293 VEYL------TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGT 366 (390)
Q Consensus 293 ~gg~------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~ 366 (390)
+||. .+++++||+.+++|+.++++|.++. ++++++++++|||+||..+. ....++++||+++
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~------ 221 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS-----LFGATVHDGRIIVAAGVTDT-GLTSSAEVYSITD------ 221 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEEEEECSS-SEEEEEEEEETTT------
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh-----ceEEEEECCEEEEEeccCCC-CccceEEEEECCC------
Confidence 9985 4789999999999999999887654 35677889999999998754 3567899999999
Q ss_pred CceEEecccCccCeEEeeee
Q 016416 367 LDWKVLAEKQHVGVFVYNCA 386 (390)
Q Consensus 367 ~~W~~~~~~p~~~~~~~~~~ 386 (390)
++|+.++++|..+..+.++.
T Consensus 222 ~~W~~~~~~p~~r~~~~~~~ 241 (315)
T 4asc_A 222 NKWAPFEAFPQERSSLSLVS 241 (315)
T ss_dssp TEEEEECCCSSCCBSCEEEE
T ss_pred CeEEECCCCCCcccceeEEE
Confidence 79999999987666554444
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-35 Score=272.13 Aligned_cols=230 Identities=20% Similarity=0.319 Sum_probs=197.3
Q ss_pred cccEEEEEeCC------------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc-----cCCeEE
Q 016416 96 VEHWVYLVCDP------------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL-----FDFAIW 158 (390)
Q Consensus 96 ~~~~l~~~~~~------------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~-----~~~~~~ 158 (390)
.++.||++||. ..++.||+.+++|..++++|.++.. +++++.+++||++||.. ..++++
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL----FGLGEVDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS----CEEEEETTEEEEEEEEBTTTCCEEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc----cceEEECCEEEEEcCccCCCCcccceEE
Confidence 47889999872 1288999999999999999987643 45677899999999964 236799
Q ss_pred EEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEE
Q 016416 159 KYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFY 238 (390)
Q Consensus 159 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy 238 (390)
+||+.+++|+.++++|.+|..|++++++++||++||........+++++||+.+++|+.++++|.+|..|++++++++||
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 210 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIV 210 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEE
Confidence 99999999999999999999999999999999999986555568899999999999999999999999999999999999
Q ss_pred EEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC--------------CCeEEEEe
Q 016416 239 VIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL--------------TNMVKKYD 304 (390)
Q Consensus 239 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~--------------~~~v~~yd 304 (390)
++||.+... ..+++++||+.+++|+.++++|. +|..+++++++++||++||. .+++++||
T Consensus 211 v~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd 284 (318)
T 2woz_A 211 IAGGVTEDG-LSASVEAFDLKTNKWEVMTEFPQ-----ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE 284 (318)
T ss_dssp EEEEEETTE-EEEEEEEEETTTCCEEECCCCSS-----CCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEE
T ss_pred EEcCcCCCC-ccceEEEEECCCCeEEECCCCCC-----cccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEe
Confidence 999987643 57789999999999999999887 45667899999999999984 36899999
Q ss_pred CCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcC
Q 016416 305 KLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 305 ~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 342 (390)
+++++|+++ +|.++. ++++++++++||++..
T Consensus 285 ~~~~~W~~~--~~~~r~-----~~~~~~~~~~iyi~~~ 315 (318)
T 2woz_A 285 DDKKEWAGM--LKEIRY-----ASGASCLATRLNLFKL 315 (318)
T ss_dssp TTTTEEEEE--ESCCGG-----GTTCEEEEEEEEGGGC
T ss_pred CCCCEehhh--cccccc-----cccceeeCCEEEEEEe
Confidence 999999999 555443 2456688999998753
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.2e-32 Score=276.55 Aligned_cols=216 Identities=15% Similarity=0.186 Sum_probs=182.5
Q ss_pred EEEeCCEEEEEcccc--cCCeEEEEECCCCcEeecC-C-----CCCCCcceeeeee--CCEEEEEeccCCCCCccceEEE
Q 016416 138 SLAVGSELLVFGREL--FDFAIWKYSLVFRSWMKCE-G-----MNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~--~~~~~~~yd~~t~~W~~~~-~-----~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
+++.++.||++||.. ..+++++||+.+++|+.++ + +|.+|..|+++++ +++||++||........+++++
T Consensus 393 ~~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 393 VDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp EEECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred EEEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence 455899999999964 4568999999999999988 5 7899999999999 9999999999876556889999
Q ss_pred EECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccC---CCCCCCCcCCCCCEE
Q 016416 208 YDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG---MYPNVNRAAQAPPLV 283 (390)
Q Consensus 208 yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~ 283 (390)
||+.+++|+.+++||.+|..|+++++ +++||++||.+... ++++||+.+++|+.+++ +|. +|..+++
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~-----~r~~~~a 543 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQ-----NSLVSAG 543 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGG-----SCCBSCE
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCC-----cccceeE
Confidence 99999999999999999999999996 99999999987643 79999999999999987 555 4555666
Q ss_pred EEEC---CEEEEEecC-------CCeEEEEeCCCCc------eEEccCCC-ccccCCCcceeEEEEeC-CEEEEEcCCCC
Q 016416 284 AVVD---NQLYAVEYL-------TNMVKKYDKLKNT------WDVLGRLP-VRADLSNGWGLAFKACG-NELLVVGGQRG 345 (390)
Q Consensus 284 ~~~~---g~l~v~gg~-------~~~v~~yd~~~~~------W~~v~~~~-~~~~~~~~~~~~~~~~~-~~lyv~GG~~~ 345 (390)
++++ ++||++||. .+++++||+.+++ |+.+..+| .++ .++++++++ ++|||+||...
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-----~~~~~~~~~~~~iyv~GG~~~ 618 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-----YGSQIKYITPRKLLIVGGTSP 618 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-----BSCEEEEEETTEEEEECCBCS
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-----ccceEEEeCCCEEEEECCccC
Confidence 7766 899999985 4789999999999 89988764 332 246677888 99999999865
Q ss_pred CC--CCeEEEeeecCCCCCCCCCCceEEec
Q 016416 346 PE--GENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 346 ~~--~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.. ....++++||+++ ++|+.+.
T Consensus 619 ~~~~~~~~~v~~yd~~t------~~W~~~~ 642 (695)
T 2zwa_A 619 SGLFDRTNSIISLDPLS------ETLTSIP 642 (695)
T ss_dssp SCCCCTTTSEEEEETTT------TEEEECC
T ss_pred CCCCCCCCeEEEEECCC------CeEEEee
Confidence 43 2456799999999 7999664
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.98 E-value=1.9e-31 Score=267.86 Aligned_cols=236 Identities=15% Similarity=0.175 Sum_probs=189.4
Q ss_pred cccEEEEEeC-----CCeeEEEecCCCceeeCC-C-----CCCCcccCCCCeeEEEe--CCEEEEEccccc----CCeEE
Q 016416 96 VEHWVYLVCD-----PRGWEAFDPMKKKWMALP-K-----IPCDECFNHADKESLAV--GSELLVFGRELF----DFAIW 158 (390)
Q Consensus 96 ~~~~l~~~~~-----~~~~~~~d~~~~~W~~l~-~-----~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~----~~~~~ 158 (390)
.++.||++|| ..+++.||+.+++|..++ + +|.++. .++++++ ++.||++||... .++++
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~----~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARM----CHTFTTISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCB----SCEEEEETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcccc----ceEEEEEccCCEEEEEcCCCCCCCccccEE
Confidence 4788999987 367899999999999988 6 444443 3456778 999999999653 46899
Q ss_pred EEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC---CCCCCcCceEEEEC
Q 016416 159 KYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS---MHSPRRLCSGFFMD 234 (390)
Q Consensus 159 ~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~ 234 (390)
+||+.+++|+.++++|.+|..|+++++ +++||++||..... ++++||+.+++|+.+++ +|.+|..|++++++
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 999999999999999999999999996 99999999987653 89999999999999986 88899999988877
Q ss_pred ---CEEEEEecccCCC-ccCceEEEEeCCCCc------eEEccCCCCCCCCcCCCCCEEEEEC-CEEEEEecC-------
Q 016416 235 ---GKFYVIGGMSSPT-VSLTCGEEFDLETRK------WRKIEGMYPNVNRAAQAPPLVAVVD-NQLYAVEYL------- 296 (390)
Q Consensus 235 ---~~iyv~GG~~~~~-~~~~~v~~yd~~~~~------W~~~~~~~~~~~~~~~~~~~~~~~~-g~l~v~gg~------- 296 (390)
++||++||....+ ...+++++||+.+++ |+.+.++|. .+|..+++++++ ++||++||.
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~----~~R~~~~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL----FQRYGSQIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG----GCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC----CCcccceEEEeCCCEEEEECCccCCCCCC
Confidence 8999999986543 567899999999999 888877542 156677888899 999999983
Q ss_pred -CCeEEEEeCCCCceEEccCCCccc---cCCCcceeEEEEeCC-EEEEEcCCC
Q 016416 297 -TNMVKKYDKLKNTWDVLGRLPVRA---DLSNGWGLAFKACGN-ELLVVGGQR 344 (390)
Q Consensus 297 -~~~v~~yd~~~~~W~~v~~~~~~~---~~~~~~~~~~~~~~~-~lyv~GG~~ 344 (390)
.+++++||+.+++|+.+. +|... ......+++++.+++ +|||+||..
T Consensus 624 ~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~ 675 (695)
T 2zwa_A 624 RTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675 (695)
T ss_dssp TTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred CCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence 578999999999999653 33221 000123456666665 999999954
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.98 E-value=1.8e-31 Score=267.61 Aligned_cols=260 Identities=16% Similarity=0.202 Sum_probs=197.2
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccC---------CeEEEEECCCCcEeecCCCCCC
Q 016416 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFD---------FAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~---------~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
..+.+|||.+++|..++++|... . +.++.. +++||++||.... ..+++||+.+++|+.++.++.+
T Consensus 166 ~~~~~~dp~~~~W~~~~~~P~~~--~---~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~ 240 (656)
T 1k3i_A 166 SSYTAPQPGLGRWGPTIDLPIVP--A---AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK 240 (656)
T ss_dssp SCCCCCCTTSCEEEEEEECSSCC--S---EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS
T ss_pred cccccCCCCCCeeeeeccCCCCc--e---eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC
Confidence 35788999999999988887621 1 223333 8999999986421 3689999999999999888887
Q ss_pred Cccee--ee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCce
Q 016416 177 RCLFG--SG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 177 r~~~~--~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 252 (390)
|..++ ++ ..+++||++||.... ++++||+.+++|+.+++|+.+|..|+++++ +|+||++||........++
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCC
T ss_pred CCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCccccc
Confidence 76654 33 358999999997642 699999999999999999999999999998 9999999995444446788
Q ss_pred EEEEeCCCCceEEcc-----CCCCCCCCc---------------------------------------------------
Q 016416 253 GEEFDLETRKWRKIE-----GMYPNVNRA--------------------------------------------------- 276 (390)
Q Consensus 253 v~~yd~~~~~W~~~~-----~~~~~~~~~--------------------------------------------------- 276 (390)
+++||+.+++|+.++ +++..+...
T Consensus 316 ~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~ 395 (656)
T 1k3i_A 316 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA 395 (656)
T ss_dssp EEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEEC
T ss_pred ceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccC
Confidence 999999999999973 333221000
Q ss_pred -CCCCCEEEE---ECCEEEEEecC--------CC---eEEEEeCCCCceEEcc--CCCccccCCCcceeEEEEe-CCEEE
Q 016416 277 -AQAPPLVAV---VDNQLYAVEYL--------TN---MVKKYDKLKNTWDVLG--RLPVRADLSNGWGLAFKAC-GNELL 338 (390)
Q Consensus 277 -~~~~~~~~~---~~g~l~v~gg~--------~~---~v~~yd~~~~~W~~v~--~~~~~~~~~~~~~~~~~~~-~~~ly 338 (390)
.+..+.++. .+++||++||. .+ .+++||+++++|..+. .||.++.. ++++++ +++||
T Consensus 396 ~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~-----~~~~~l~~g~i~ 470 (656)
T 1k3i_A 396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF-----HTSVVLPDGSTF 470 (656)
T ss_dssp CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS-----CEEEECTTSCEE
T ss_pred CCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc-----CCeEECCCCCEE
Confidence 011222332 48999999984 23 7899999999999986 78776542 455566 99999
Q ss_pred EEcCCCCC-----CCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeee
Q 016416 339 VVGGQRGP-----EGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAV 387 (390)
Q Consensus 339 v~GG~~~~-----~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 387 (390)
|+||.... .....++++||+++ ++|+.++++|..|..++++.+
T Consensus 471 v~GG~~~~~~~~~~~~~~~v~~ydp~t------~~W~~~~~~~~~R~~hs~a~l 518 (656)
T 1k3i_A 471 ITGGQRRGIPFEDSTPVFTPEIYVPEQ------DTFYKQNPNSIVRVYHSISLL 518 (656)
T ss_dssp EECCBSBCCTTCCCSBCCCCEEEEGGG------TEEEECCCCSSCCCTTEEEEE
T ss_pred EECCcccCcCcCCCCcccceEEEcCCC------CceeecCCCCCccccccHhhc
Confidence 99997532 23456799999998 799999999776666655443
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=7.6e-29 Score=248.54 Aligned_cols=251 Identities=16% Similarity=0.146 Sum_probs=189.7
Q ss_pred ccEEEEEeCC------------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCC
Q 016416 97 EHWVYLVCDP------------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVF 164 (390)
Q Consensus 97 ~~~l~~~~~~------------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t 164 (390)
+..||++|+. ..++.||+.+++|..++.+|.++..+ +...++..+++||++||.... ++++||+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~-~~~~~~~~~g~lyv~GG~~~~-~v~~yd~~t 274 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF-CPGISMDGNGQIVVTGGNDAK-KTSLYDSSS 274 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS-SCEEEECTTSCEEEECSSSTT-CEEEEEGGG
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc-cccccCCCCCCEEEeCCCCCC-ceEEecCcC
Confidence 6789999741 26789999999999998887765432 222344568999999996543 899999999
Q ss_pred CcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC-----CCCCCC-------------
Q 016416 165 RSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP-----SMHSPR------------- 225 (390)
Q Consensus 165 ~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-----~~~~~r------------- 225 (390)
++|..+++|+.+|..|+++++ +++||++||........+++++||+.+++|+.++ +|+..+
T Consensus 275 ~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv 354 (656)
T 1k3i_A 275 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 354 (656)
T ss_dssp TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCE
T ss_pred CceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEE
Confidence 999999999999999999998 9999999995433346788999999999999863 333321
Q ss_pred --------------------------------------------cCceEEE---ECCEEEEEecccC--CCccCc---eE
Q 016416 226 --------------------------------------------RLCSGFF---MDGKFYVIGGMSS--PTVSLT---CG 253 (390)
Q Consensus 226 --------------------------------------------~~~~~~~---~~~~iyv~GG~~~--~~~~~~---~v 253 (390)
..++++. .+++||++||... ....++ .+
T Consensus 355 ~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v 434 (656)
T 1k3i_A 355 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII 434 (656)
T ss_dssp EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEE
T ss_pred EECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEE
Confidence 1223332 3899999999753 112234 78
Q ss_pred EEEeCCCCceEEcc--CCCCCCCCcCCCCCEEEEE-CCEEEEEecC-----------CCeEEEEeCCCCceEEccCCCcc
Q 016416 254 EEFDLETRKWRKIE--GMYPNVNRAAQAPPLVAVV-DNQLYAVEYL-----------TNMVKKYDKLKNTWDVLGRLPVR 319 (390)
Q Consensus 254 ~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~-----------~~~v~~yd~~~~~W~~v~~~~~~ 319 (390)
++||+.+++|..+. .||. +|..+.++++ +|+||++||. ...+++||+++++|+.++.++.+
T Consensus 435 ~~yd~~~~~W~~~~~~~mp~-----~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~ 509 (656)
T 1k3i_A 435 TLGEPGTSPNTVFASNGLYF-----ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 509 (656)
T ss_dssp ECCSTTSCCEEEECTTCCSS-----CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred EcCCCCCCCeeEEccCCCCC-----CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence 89999999999986 7777 4555667777 9999999984 36799999999999999998877
Q ss_pred ccCCCcceeEEEEe--CCEEEEEcCCCCCC--CCeEEEeeecCC
Q 016416 320 ADLSNGWGLAFKAC--GNELLVVGGQRGPE--GENVVLNSWCPK 359 (390)
Q Consensus 320 ~~~~~~~~~~~~~~--~~~lyv~GG~~~~~--~~~~~i~~y~~~ 359 (390)
+.. ++++++ +++||++||..... ....++++|.|.
T Consensus 510 R~~-----hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 510 RVY-----HSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp CCT-----TEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred ccc-----ccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeCh
Confidence 653 344455 99999999953211 122346677764
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.11 E-value=7.6e-08 Score=91.21 Aligned_cols=274 Identities=13% Similarity=0.138 Sum_probs=151.1
Q ss_pred CCCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchhhhhh------------------------------
Q 016416 43 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQ------------------------------ 92 (390)
Q Consensus 43 ~~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~~r~~------------------------------ 92 (390)
....+..||+|++..||++|+..+|.++..|||+|+.++.++.+.+....
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~ 94 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYI 94 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHh
Confidence 34578899999999999999999999999999999998876543321000
Q ss_pred --------------------cCccc----------cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC
Q 016416 93 --------------------LGIVE----------HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG 142 (390)
Q Consensus 93 --------------------~~~~~----------~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~ 142 (390)
.++.. ..++..+....+..+|..+.+-.. .+.... ..-..+...
T Consensus 95 ~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~----~~v~~~~~~ 168 (445)
T 2ovr_B 95 RQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--TLVGHT----GGVWSSQMR 168 (445)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE--ECCCCS----SCEEEEEEE
T ss_pred hhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEE--EEcCCC----CCEEEEEec
Confidence 00000 111111224456667766543221 111111 111223333
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC
Q 016416 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
+.+++.|+. +..+.+||..+++-... +............++..++.|+.+ ..+.+||..+++-... +.
T Consensus 169 ~~~l~s~~~--dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~--~~ 236 (445)
T 2ovr_B 169 DNIIISGST--DRTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKRVVSGSRD------ATLRVWDIETGQCLHV--LM 236 (445)
T ss_dssp TTEEEEEET--TSCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTEEEEEETT------SEEEEEESSSCCEEEE--EE
T ss_pred CCEEEEEeC--CCeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCEEEEEeCC------CEEEEEECCCCcEEEE--Ec
Confidence 445555543 45788999888754322 111122222233345556666643 3588899887764321 11
Q ss_pred CCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEE
Q 016416 223 SPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKK 302 (390)
Q Consensus 223 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~ 302 (390)
........+..++..++.|+.++ .+..||+.+.+-.. .+... .........++..++.|+..+.+.+
T Consensus 237 ~~~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~-----~~~v~~~~~~~~~l~~~~~d~~i~i 303 (445)
T 2ovr_B 237 GHVAAVRCVQYDGRRVVSGAYDF------MVKVWDPETETCLH--TLQGH-----TNRVYSLQFDGIHVVSGSLDTSIRV 303 (445)
T ss_dssp CCSSCEEEEEECSSCEEEEETTS------CEEEEEGGGTEEEE--EECCC-----SSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCcccEEEEEECCCEEEEEcCCC------EEEEEECCCCcEeE--EecCC-----CCceEEEEECCCEEEEEeCCCeEEE
Confidence 12222334455787777776543 46778887764322 11111 0111233447888888888889999
Q ss_pred EeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 303 YDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 303 yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
||..+.+-... +..... . ...+..++.+++.|+.++ .|.+||..+
T Consensus 304 ~d~~~~~~~~~--~~~~~~----~-v~~~~~~~~~l~~~~~dg------~i~vwd~~~ 348 (445)
T 2ovr_B 304 WDVETGNCIHT--LTGHQS----L-TSGMELKDNILVSGNADS------TVKIWDIKT 348 (445)
T ss_dssp EETTTCCEEEE--ECCCCS----C-EEEEEEETTEEEEEETTS------CEEEEETTT
T ss_pred EECCCCCEEEE--EcCCcc----c-EEEEEEeCCEEEEEeCCC------eEEEEECCC
Confidence 99988753321 111111 1 223344566667776553 477899876
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.06 E-value=2.4e-08 Score=94.51 Aligned_cols=275 Identities=11% Similarity=0.111 Sum_probs=152.3
Q ss_pred CCCCCCChHH----HHHHHhhhccccchhhhHhhcHHHHHHhhcCCchhhhh--h-------------------------
Q 016416 44 DSLLPGLVDD----VALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRK--Q------------------------- 92 (390)
Q Consensus 44 ~~~~~~LP~d----l~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~~r~--~------------------------- 92 (390)
..++..||+| |+..||++|+..+|.++..|||+|+.++.++.+.+... .
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP 87 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC----
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCC
Confidence 4567789999 99999999999999999999999999988765332100 0
Q ss_pred ------------------------------cC------------cc---------ccEEEEEeCCCeeEEEecCCCceee
Q 016416 93 ------------------------------LG------------IV---------EHWVYLVCDPRGWEAFDPMKKKWMA 121 (390)
Q Consensus 93 ------------------------------~~------------~~---------~~~l~~~~~~~~~~~~d~~~~~W~~ 121 (390)
.+ .. ...+...+....+..+|..+.+-..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~ 167 (435)
T 1p22_A 88 PDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR 167 (435)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE
T ss_pred CCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE
Confidence 00 00 0111122224456667765543322
Q ss_pred CCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCc
Q 016416 122 LPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHV 201 (390)
Q Consensus 122 l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~ 201 (390)
. +.. +...-..+..++.+++.|+. +..+.+||..+++-... +...........+++..++.|+.++
T Consensus 168 ~--~~~----h~~~v~~l~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~dg---- 233 (435)
T 1p22_A 168 I--LTG----HTGSVLCLQYDERVIITGSS--DSTVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKDR---- 233 (435)
T ss_dssp E--ECC----CSSCEEEEECCSSEEEEEET--TSCEEEEESSSCCEEEE--ECCCCSCEEEEECCTTEEEEEETTS----
T ss_pred E--EcC----CCCcEEEEEECCCEEEEEcC--CCeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCCEEEEeeCCC----
Confidence 1 111 11111233446666666653 45788899887764322 1112222233334555666666543
Q ss_pred cceEEEEECCCCcEEEc-CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016416 202 LKSAELYDSTTGRWEML-PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 202 ~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
.+.+||..++.-... ..+.........+..++...+.|+.+ ..+..||+.+.+-... +... . ..
T Consensus 234 --~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~--~~~~----~-~~ 298 (435)
T 1p22_A 234 --SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRT--LNGH----K-RG 298 (435)
T ss_dssp --CEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEE--EECC----S-SC
T ss_pred --cEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEE--EcCC----C-Cc
Confidence 478899877652211 11111222233344466666666653 3577899987654321 1110 0 11
Q ss_pred CEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 281 PLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 281 ~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
......++.+++.|+..+.|.+||..+.+-.. .+..... ....+..++..++.|+.++ .|.+||..+
T Consensus 299 v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~~-----~v~~~~~~~~~l~sg~~dg------~i~vwd~~~ 365 (435)
T 1p22_A 299 IACLQYRDRLVVSGSSDNTIRLWDIECGACLR--VLEGHEE-----LVRCIRFDNKRIVSGAYDG------KIKVWDLVA 365 (435)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEE--EECCCSS-----CEEEEECCSSEEEEEETTS------CEEEEEHHH
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCcC-----cEEEEEecCCEEEEEeCCC------cEEEEECCC
Confidence 12334467777888888899999998765322 1211111 1234455788888888664 377888754
No 21
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.96 E-value=1.5e-07 Score=89.51 Aligned_cols=277 Identities=12% Similarity=0.136 Sum_probs=144.4
Q ss_pred CCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhc-CCchhhhh-------------------------------
Q 016416 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKS-GYLYGLRK------------------------------- 91 (390)
Q Consensus 44 ~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s-~~~~~~r~------------------------------- 91 (390)
...+..||+|++..||++||..+|.++..|||+|+.++.+ +.+.+...
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRL 91 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHHH
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchhh
Confidence 3467789999999999999999999999999999999987 43211000
Q ss_pred -------------------------hcCccc----------cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCe
Q 016416 92 -------------------------QLGIVE----------HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADK 136 (390)
Q Consensus 92 -------------------------~~~~~~----------~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~ 136 (390)
..++.. ..++..+....+..+|..+.+-.. .+... ...-
T Consensus 92 ~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~--~~~~h----~~~V 165 (464)
T 3v7d_B 92 RLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLL--QLSGH----DGGV 165 (464)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEE--EECCC----SSCE
T ss_pred HHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEE--EEeCC----CcCE
Confidence 000000 111111224456667765543221 11111 1111
Q ss_pred eEEE-eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee---CCEEEEEeccCCCCCccceEEEEECCC
Q 016416 137 ESLA-VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTT 212 (390)
Q Consensus 137 ~~~~-~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t 212 (390)
..+. ..+.+++.|+. +..+.+||..+++-...-..... .-.++... ++..++.|+.++ .+.+||..+
T Consensus 166 ~~l~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~l~s~s~d~------~i~vwd~~~ 236 (464)
T 3v7d_B 166 WALKYAHGGILVSGST--DRTVRVWDIKKGCCTHVFEGHNS-TVRCLDIVEYKNIKYIVTGSRDN------TLHVWKLPK 236 (464)
T ss_dssp EEEEECSTTEEEEEET--TSCEEEEETTTTEEEEEECCCSS-CEEEEEEEESSSCEEEEEEETTS------CEEEEECCC
T ss_pred EEEEEcCCCEEEEEeC--CCCEEEEECCCCcEEEEECCCCC-ccEEEEEecCCCCCEEEEEcCCC------cEEEeeCCC
Confidence 1222 22335555543 45788999988764322111111 11122222 457777776543 377888776
Q ss_pred CcEEEcC---------------------CCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC
Q 016416 213 GRWEMLP---------------------SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP 271 (390)
Q Consensus 213 ~~W~~~~---------------------~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 271 (390)
..-.... .+.........+..++.+.+.|+.++ .+..||+.+.+-...- ..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~--~~ 308 (464)
T 3v7d_B 237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN------TLIVWDVAQMKCLYIL--SG 308 (464)
T ss_dssp CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTS------CEEEEETTTTEEEEEE--CC
T ss_pred CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCC------eEEEEECCCCcEEEEe--cC
Confidence 5422110 00001111122234555666665442 4778998876543221 11
Q ss_pred CCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCe
Q 016416 272 NVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGEN 350 (390)
Q Consensus 272 ~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~ 350 (390)
. ......++. .++..++.|+..+.+.+||..+.+-.. .+..... ....+..++..++.|+.++
T Consensus 309 ~----~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~-----~v~~~~~~~~~l~s~s~dg----- 372 (464)
T 3v7d_B 309 H----TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY--TLQGHTA-----LVGLLRLSDKFLVSAAADG----- 372 (464)
T ss_dssp C----SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE--EECCCSS-----CEEEEEECSSEEEEEETTS-----
T ss_pred C----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EEeCCCC-----cEEEEEEcCCEEEEEeCCC-----
Confidence 0 001112222 356677777777889999998765322 2211111 1233445667777777654
Q ss_pred EEEeeecCCC
Q 016416 351 VVLNSWCPKS 360 (390)
Q Consensus 351 ~~i~~y~~~~ 360 (390)
.|.+||+.+
T Consensus 373 -~v~vwd~~~ 381 (464)
T 3v7d_B 373 -SIRGWDAND 381 (464)
T ss_dssp -EEEEEETTT
T ss_pred -cEEEEECCC
Confidence 577888876
No 22
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.77 E-value=5.2e-09 Score=67.44 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=39.0
Q ss_pred CCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchh
Q 016416 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYG 88 (390)
Q Consensus 44 ~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~ 88 (390)
...|..||+|++.+||++||..++.+++.|||+|+.++.++.+.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 456899999999999999999999999999999999999877653
No 23
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.45 E-value=6.9e-08 Score=84.90 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=43.1
Q ss_pred CCCCCCChHHHHHHHhhhccccchh-hhHhhcHHHHHHhhcCCchhhh
Q 016416 44 DSLLPGLVDDVALNCLAFACTSDYA-SLLFINKRFHKLIKSGYLYGLR 90 (390)
Q Consensus 44 ~~~~~~LP~dl~~~iL~rlp~~~l~-~~~~V~k~w~~l~~s~~~~~~r 90 (390)
...+..||+||+++||++||.++|. ++++|||+|+.++.++.|...+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 4578899999999999999999999 9999999999999999887654
No 24
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.38 E-value=0.00056 Score=61.77 Aligned_cols=220 Identities=9% Similarity=-0.118 Sum_probs=126.6
Q ss_pred CCeeEEEecCCCceeeCCCCC-CCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcE-eecCCCCCCCcceeee
Q 016416 106 PRGWEAFDPMKKKWMALPKIP-CDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSW-MKCEGMNHPRCLFGSG 183 (390)
Q Consensus 106 ~~~~~~~d~~~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W-~~~~~~~~~r~~~~~~ 183 (390)
...+..+|+.+.+...--... ...........+...++++|+... ..+.+.++|+.+.+- ..++....+ ..++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~--~~~~v~viD~~t~~~~~~i~~~~~p---~~i~ 90 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN--NSHVIFAIDINTFKEVGRITGFTSP---RYIH 90 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG--GGTEEEEEETTTCCEEEEEECCSSE---EEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc--CCCEEEEEECcccEEEEEcCCCCCC---cEEE
Confidence 357788999988765321000 000000011234456889998765 346899999998876 444333222 2333
Q ss_pred e-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCC----CcCceEEEECCEEEEEecccCCCccCceEEEEeC
Q 016416 184 S-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSP----RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDL 258 (390)
Q Consensus 184 ~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 258 (390)
. -++++|+.... ...+.++|+.+++-...-+.... ......+..++++|+..-. ....+.++|+
T Consensus 91 ~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-----~~~~v~viD~ 159 (328)
T 3dsm_A 91 FLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-----YQNRILKIDT 159 (328)
T ss_dssp EEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT-----TCCEEEEEET
T ss_pred EeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC-----CCCEEEEEEC
Confidence 3 57899998642 35689999999875421111110 0223444578999998420 1346889999
Q ss_pred CCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC----------CCeEEEEeCCCCceEEccCCCccccCCCccee
Q 016416 259 ETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL----------TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGL 328 (390)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~----------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~ 328 (390)
.+++....-..... + ......-+|++|+.... .+.|+++|+++++....-.++..... .
T Consensus 160 ~t~~~~~~i~~g~~----p--~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p-----~ 228 (328)
T 3dsm_A 160 ETDKVVDELTIGIQ----P--TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP-----S 228 (328)
T ss_dssp TTTEEEEEEECSSC----B--CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCC-----E
T ss_pred CCCeEEEEEEcCCC----c--cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCc-----e
Confidence 99876532222111 1 01133346899888643 27899999999876543233322111 2
Q ss_pred EEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCCC
Q 016416 329 AFKAC--GNELLVVGGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 329 ~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~~ 361 (390)
.++.. ++.||+..+ .|++||++++
T Consensus 229 ~la~~~d~~~lyv~~~---------~v~~~d~~t~ 254 (328)
T 3dsm_A 229 EVQLNGTRDTLYWINN---------DIWRMPVEAD 254 (328)
T ss_dssp EEEECTTSCEEEEESS---------SEEEEETTCS
T ss_pred eEEEecCCCEEEEEcc---------EEEEEECCCC
Confidence 23333 678888765 3778888773
No 25
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.30 E-value=0.00017 Score=65.25 Aligned_cols=236 Identities=12% Similarity=0.012 Sum_probs=131.7
Q ss_pred cccEEEEEeC-CCeeEEEecCCCce-eeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEee-cCC
Q 016416 96 VEHWVYLVCD-PRGWEAFDPMKKKW-MALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMK-CEG 172 (390)
Q Consensus 96 ~~~~l~~~~~-~~~~~~~d~~~~~W-~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~~ 172 (390)
....+|+... ...+..+|+.+.+- ..++....+. ...+..++.+|+... ....+.++|+.+++-.. ++.
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~------~i~~~~~g~lyv~~~--~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPR------YIHFLSDEKAYVTQI--WDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEE------EEEEEETTEEEEEEB--SCSEEEEEETTTTEEEEEEEC
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCc------EEEEeCCCeEEEEEC--CCCeEEEEECCCCeEEEEEEc
Confidence 3567777754 46788899987765 3343222211 112335779998763 24689999999987542 221
Q ss_pred CCC---CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCc
Q 016416 173 MNH---PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTV 248 (390)
Q Consensus 173 ~~~---~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~ 248 (390)
... ......++..++++|+..-. ....+.++|+.+++....-+.. ......+. -+|++|+.........
T Consensus 124 g~~~~~~~~p~~i~~~~~~lyv~~~~-----~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQYGKYVYVNCWS-----YQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGS 196 (328)
T ss_dssp TTCCTTTCBCCCEEEETTEEEEEECT-----TCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred CCccccCCCcceEEEECCEEEEEcCC-----CCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCCCEEEEECCCccCC
Confidence 110 00222444478999998521 1356999999998764421111 11122222 3689888753321111
Q ss_pred c----CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccC
Q 016416 249 S----LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADL 322 (390)
Q Consensus 249 ~----~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~ 322 (390)
. ...+.++|+.+.+....-.++.. .....++.. ++.+|+..+ .+++||+++++.....-.+.....
T Consensus 197 ~~~~~~~~v~~id~~t~~v~~~~~~~~g-----~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~ 268 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAETFTVEKQFKFKLG-----DWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFRDTK 268 (328)
T ss_dssp SSCBCCCEEEEEETTTTEEEEEEECCTT-----CCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCCSSC
T ss_pred ccccCCceEEEEECCCCeEEEEEecCCC-----CCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCCCCc
Confidence 1 36799999999876543223221 011134444 567888765 899999988775322212211000
Q ss_pred CCcceeEEEE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 323 SNGWGLAFKA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 323 ~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
. .+++. .+++||+....+- .....|.+||++.
T Consensus 269 ---p-~gi~vdp~~g~lyva~~~~y--~~~~~V~v~d~~g 302 (328)
T 3dsm_A 269 ---Y-YGLTVNPNNGEVYVADAIDY--QQQGIVYRYSPQG 302 (328)
T ss_dssp ---E-EEEEECTTTCCEEEEECTTS--SSEEEEEEECTTC
T ss_pred ---e-EEEEEcCCCCeEEEEccccc--ccCCEEEEECCCC
Confidence 1 22333 3789999973110 1235799999974
No 26
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.27 E-value=0.0025 Score=58.35 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=130.5
Q ss_pred ccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--EeecCC
Q 016416 97 EHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~ 172 (390)
+..+|+......+.++|+.+. .|..-..-.. ....+..++.+|+... ...++.+|+.+++ |+.-..
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-------~~~p~~~~~~v~v~~~---~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA-------LSRPVVSDGLVLIHTS---NGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCC-------CSCCEEETTEEEEECT---TSEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce-------EcCCEEECCEEEEEcC---CCeEEEEECCCCcEEEEEeCC
Confidence 567777766678999999866 4754221111 0112445778877543 3478999998875 765433
Q ss_pred CCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCC--------cCceEEEECCEEEEE
Q 016416 173 MNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPR--------RLCSGFFMDGKFYVI 240 (390)
Q Consensus 173 ~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~ 240 (390)
.+. .+.....+..++.+|+. .. ...+..||+.+++ |+.-...+... .....+..++.+|+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~v~~g-~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~ 245 (376)
T 3q7m_A 173 MPSLSLRGESAPTTAFGAAVVG-GD------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL 245 (376)
T ss_dssp C-----CCCCCCEEETTEEEEC-CT------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred CCceeecCCCCcEEECCEEEEE-cC------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence 221 11222334457777763 22 2358899998775 76643222111 122334568898886
Q ss_pred ecccCCCccCceEEEEeCCCC--ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEccCC
Q 016416 241 GGMSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGRL 316 (390)
Q Consensus 241 GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~ 316 (390)
+. ...+..+|+.++ .|+.-.. . ....+..++.+|+... .+.+++||+.+++ |+.-. +
T Consensus 246 ~~-------~g~l~~~d~~tG~~~w~~~~~--~--------~~~~~~~~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~-~ 306 (376)
T 3q7m_A 246 AY-------NGNLTALDLRSGQIMWKRELG--S--------VNDFIVDGNRIYLVDQ-NDRVMALTIDGGVTLWTQSD-L 306 (376)
T ss_dssp CT-------TSCEEEEETTTCCEEEEECCC--C--------EEEEEEETTEEEEEET-TCCEEEEETTTCCEEEEECT-T
T ss_pred ec-------CcEEEEEECCCCcEEeeccCC--C--------CCCceEECCEEEEEcC-CCeEEEEECCCCcEEEeecc-c
Confidence 42 234788999876 4764321 1 1135667889988764 4579999998875 87631 1
Q ss_pred CccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016416 317 PVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
+.... ...+..++.||+..... .++++|+.+ ++..|+.
T Consensus 307 ~~~~~------~~~~~~~~~l~v~~~~g-------~l~~~d~~t----G~~~~~~ 344 (376)
T 3q7m_A 307 LHRLL------TSPVLYNGNLVVGDSEG-------YLHWINVED----GRFVAQQ 344 (376)
T ss_dssp TTSCC------CCCEEETTEEEEECTTS-------EEEEEETTT----CCEEEEE
T ss_pred CCCcc------cCCEEECCEEEEEeCCC-------eEEEEECCC----CcEEEEE
Confidence 11111 12345688988875421 588999988 4556864
No 27
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.16 E-value=0.00042 Score=59.27 Aligned_cols=188 Identities=19% Similarity=0.118 Sum_probs=117.3
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016416 138 SLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
....++.+|...|....+.+.++|+.+++-...-+++......+++..+++||++... .+.+++||+.+.+-..
T Consensus 26 L~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 26 LFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGFVYDLATLTPRA 99 (243)
T ss_dssp EEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTTTEEEE
T ss_pred EEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEEEEECCcCcEEE
Confidence 3445789999888776778999999999876555555555566778889999998543 4569999998876433
Q ss_pred cCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecC
Q 016416 218 LPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL 296 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~ 296 (390)
.++.+..+.+.+.-++++|+.-| ...+..+|+.+.+-. .+..-..+.. -.....+...+|+||+---.
T Consensus 100 --ti~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~--~~~lNeLe~~~G~lyanvw~ 168 (243)
T 3mbr_X 100 --RFRYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRP--LDNLNELEWVNGELLANVWL 168 (243)
T ss_dssp --EEECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE--CCCEEEEEEETTEEEEEETT
T ss_pred --EEeCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCcc--cccceeeEEeCCEEEEEECC
Confidence 22223334455544667888633 346888999997643 2221100000 01111345679999977767
Q ss_pred CCeEEEEeCCCCc---eEEccCCCcccc----CCCc--ceeEEEEeCCEEEEEcC
Q 016416 297 TNMVKKYDKLKNT---WDVLGRLPVRAD----LSNG--WGLAFKACGNELLVVGG 342 (390)
Q Consensus 297 ~~~v~~yd~~~~~---W~~v~~~~~~~~----~~~~--~~~~~~~~~~~lyv~GG 342 (390)
.+.|.+-|+++++ |-.++.+..... .... -|.|...-+++|||.|-
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 8899999999986 555554422110 0000 12222223678998886
No 28
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.16 E-value=0.0043 Score=56.83 Aligned_cols=235 Identities=13% Similarity=0.104 Sum_probs=133.5
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCC---cccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--Ee
Q 016416 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCD---ECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WM 168 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~---~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~ 168 (390)
.+..+|+......+.+||+.+. .|..-...... .............++.||+... ...++.+|+.+++ |+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE---KAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET---TSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC---CCEEEEEECCCCCEEEE
Confidence 4678888766678999999755 47543211100 0001111223455788888653 3578999998875 75
Q ss_pred ecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCC--CCcCceEEEECCEEEEEeccc
Q 016416 169 KCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHS--PRRLCSGFFMDGKFYVIGGMS 244 (390)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~ 244 (390)
.-.. .. .....+..++.+|+... ...+..||+.+++ |+.-...+. .+...+.+..++.||+. ..
T Consensus 129 ~~~~--~~-~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g-~~- 196 (376)
T 3q7m_A 129 TKVA--GE-ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVG-GD- 196 (376)
T ss_dssp EECS--SC-CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEEC-CT-
T ss_pred EeCC--Cc-eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEE-cC-
Confidence 4322 11 11223445788887532 2358999998886 876432221 12223344568887773 21
Q ss_pred CCCccCceEEEEeCCCCc--eEEccCCCCCCC---CcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCC--ceEEccCCC
Q 016416 245 SPTVSLTCGEEFDLETRK--WRKIEGMYPNVN---RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKN--TWDVLGRLP 317 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~---~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~--~W~~v~~~~ 317 (390)
...+..||+.+++ |+.-...+.... .........+..++.+|+.+ ..+.+.++|+.++ .|+.-. +
T Consensus 197 -----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~g~l~~~d~~tG~~~w~~~~--~ 268 (376)
T 3q7m_A 197 -----NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA-YNGNLTALDLRSGQIMWKREL--G 268 (376)
T ss_dssp -----TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC-TTSCEEEEETTTCCEEEEECC--C
T ss_pred -----CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe-cCcEEEEEECCCCcEEeeccC--C
Confidence 2357889998764 765433221100 00001112345688888875 3567999999877 477532 1
Q ss_pred ccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEe
Q 016416 318 VRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
. ....+..++.||+..... .++++|+.+ +...|+.-
T Consensus 269 ~--------~~~~~~~~~~l~~~~~~g-------~l~~~d~~t----G~~~w~~~ 304 (376)
T 3q7m_A 269 S--------VNDFIVDGNRIYLVDQND-------RVMALTIDG----GVTLWTQS 304 (376)
T ss_dssp C--------EEEEEEETTEEEEEETTC-------CEEEEETTT----CCEEEEEC
T ss_pred C--------CCCceEECCEEEEEcCCC-------eEEEEECCC----CcEEEeec
Confidence 1 123456789999987522 388999988 45568764
No 29
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.05 E-value=0.0011 Score=56.54 Aligned_cols=164 Identities=18% Similarity=0.029 Sum_probs=105.6
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCC
Q 016416 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
+....++.+|+..|..+ .+.+.++|+.+++=..--+++....+.+.+..+++||++... .+.+++||+.+
T Consensus 25 GL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~v~D~~t 94 (243)
T 3mbr_X 25 GLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGFVYDLAT 94 (243)
T ss_dssp EEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTT
T ss_pred cEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEEEEECCc
Confidence 66777899999988754 356899999999865544555554555667789999998543 35689999988
Q ss_pred CceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-cc--CCCccccCCCcceeEEEEeCCEE
Q 016416 261 RKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-LG--RLPVRADLSNGWGLAFKACGNEL 337 (390)
Q Consensus 261 ~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~--~~~~~~~~~~~~~~~~~~~~~~l 337 (390)
.+-.. .++.. ..+.+++.-+++||+-.| .+.+..+|+++.+-.. |. .-+.+.. .-..+...+|+|
T Consensus 95 l~~~~--ti~~~-----~~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~----~lNeLe~~~G~l 162 (243)
T 3mbr_X 95 LTPRA--RFRYP-----GEGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLD----NLNELEWVNGEL 162 (243)
T ss_dssp TEEEE--EEECS-----SCCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECC----CEEEEEEETTEE
T ss_pred CcEEE--EEeCC-----CCceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccc----cceeeEEeCCEE
Confidence 65432 22221 123356666778999887 7889999999976432 22 1111111 012233458999
Q ss_pred EEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016416 338 LVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 338 yv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
|+---.. ++|.+.||.++ ....|-.++.+
T Consensus 163 yanvw~s------~~I~vIDp~tG---~V~~~idl~~l 191 (243)
T 3mbr_X 163 LANVWLT------SRIARIDPASG---KVVAWIDLQAL 191 (243)
T ss_dssp EEEETTT------TEEEEECTTTC---BEEEEEECGGG
T ss_pred EEEECCC------CeEEEEECCCC---CEEEEEECCcC
Confidence 9665432 26889999884 23345555543
No 30
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.97 E-value=0.0013 Score=56.80 Aligned_cols=186 Identities=12% Similarity=-0.046 Sum_probs=112.7
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 140 AVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
..++.+|+..|....+.+.++|+.+++-...-+++......+++..+++||+.... .+.+++||+.+.+-..
T Consensus 50 ~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~t~~~~~-- 121 (262)
T 3nol_A 50 YRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGFVWNIRNLRQVR-- 121 (262)
T ss_dssp EETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTTCCEEE--
T ss_pred EECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEEEEECccCcEEE--
Confidence 34789999888766678999999999865444454444445677889999999542 3569999999877533
Q ss_pred CCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCC
Q 016416 220 SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTN 298 (390)
Q Consensus 220 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~ 298 (390)
.++.+..+.+.+.-++++|+.-| .+.+..+|+.+.+-. .+........ ......+...+|+||+---..+
T Consensus 122 ti~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~--~~~lNELe~~~G~lyan~w~~~ 192 (262)
T 3nol_A 122 SFNYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEE--LPELNELEWVDGEIFANVWQTN 192 (262)
T ss_dssp EEECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEE--CCCEEEEEEETTEEEEEETTSS
T ss_pred EEECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCcc--ccccceeEEECCEEEEEEccCC
Confidence 12222233444444567777532 346888999987643 2221110000 0000124556999998776788
Q ss_pred eEEEEeCCCCc---eEEccCCCccc---cCCCc--ceeEEEEeCCEEEEEcC
Q 016416 299 MVKKYDKLKNT---WDVLGRLPVRA---DLSNG--WGLAFKACGNELLVVGG 342 (390)
Q Consensus 299 ~v~~yd~~~~~---W~~v~~~~~~~---~~~~~--~~~~~~~~~~~lyv~GG 342 (390)
.|.+-|+++++ |-.++.+.... ..... -|.|.-.-+++|||.|-
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999986 44444332111 00000 12332223678998885
No 31
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.71 E-value=0.0027 Score=54.78 Aligned_cols=163 Identities=11% Similarity=-0.099 Sum_probs=99.9
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCC
Q 016416 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
+....++.+|+..|..+ .+.+.++|+.+++=..--+++..-...+.+..+++||+.... .+.+.+||+.+
T Consensus 47 GL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~t 116 (262)
T 3nol_A 47 GFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGFVWNIRN 116 (262)
T ss_dssp EEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTT
T ss_pred eEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEEEEECcc
Confidence 55555899999988654 367899999999854433444433344566789999998543 35688999998
Q ss_pred CceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-ccCCCccccCCCcceeEEEEeCCEEE
Q 016416 261 RKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-LGRLPVRADLSNGWGLAFKACGNELL 338 (390)
Q Consensus 261 ~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~~~~~~~~~~~~~~~~~~~~~~~ly 338 (390)
.+-. +++. +. .+.+++.-+++||+..| .+.++.+|+++.+-.. |.--...+... .. -.+...+|+||
T Consensus 117 ~~~~~ti~~-~~-------eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~-~l-NELe~~~G~ly 185 (262)
T 3nol_A 117 LRQVRSFNY-DG-------EGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELP-EL-NELEWVDGEIF 185 (262)
T ss_dssp CCEEEEEEC-SS-------CCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECC-CE-EEEEEETTEEE
T ss_pred CcEEEEEEC-CC-------CceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCcccc-cc-ceeEEECCEEE
Confidence 7643 2222 11 12245656677888887 6889999999876332 22110011000 00 11334588999
Q ss_pred EEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016416 339 VVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 339 v~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
+---. ...|.+.||.++ ....|-.++
T Consensus 186 an~w~------~~~I~vIDp~tG---~V~~~Id~~ 211 (262)
T 3nol_A 186 ANVWQ------TNKIVRIDPETG---KVTGIIDLN 211 (262)
T ss_dssp EEETT------SSEEEEECTTTC---BEEEEEECT
T ss_pred EEEcc------CCeEEEEECCCC---cEEEEEECC
Confidence 65532 236889999884 223355554
No 32
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0021 Score=58.34 Aligned_cols=242 Identities=9% Similarity=0.037 Sum_probs=120.6
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--C--CEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--G--SELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~--~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
..|...+....+..+|.....+..+..+..... .-..+.. . +.+++.|+. +..+.+||..+++|..+..+
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~ 97 (379)
T 3jrp_A 24 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVH 97 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEET--TSCEEEEEEETTEEEEEEEE
T ss_pred CEEEEEECCCcEEEEecCCCcceeeeEecCCCC----cEEEEEeCCCCCCCEEEEecc--CCEEEEEEcCCCceeEeeee
Confidence 344444445667778876555544333322111 1112332 2 455555543 35788999999887665444
Q ss_pred CCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE-EE--------------C
Q 016416 174 NHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF-FM--------------D 234 (390)
Q Consensus 174 ~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~--------------~ 234 (390)
.........+.+ + +.+++.|+.+ ..+.+||..++.-.....+.........+ .. +
T Consensus 98 ~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T 3jrp_A 98 AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 171 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred cCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence 332222222222 2 5566666643 34788888776321110011111111122 11 4
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEE-EC---CEEEEEecCCCeEEEEeCCCC
Q 016416 235 GKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAV-VD---NQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~-~~---g~l~v~gg~~~~v~~yd~~~~ 308 (390)
+.+++.|+.++ .+..||..+.. |..+..+..... ....++. -+ +.+++.++..+.+.+||..+.
T Consensus 172 ~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 172 SRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp TCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred CCEEEEEeCCC------eEEEEEecCCCcceeeEEEEecccC----cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 67777776543 36677775543 544433322110 0112222 23 688888888888999998876
Q ss_pred c--eEE-ccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccC
Q 016416 309 T--WDV-LGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 309 ~--W~~-v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p 376 (390)
. +.. +....... ..-.++. .-+++++++|+.++ .|.+|+...+ ..|..+....
T Consensus 242 ~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~~~dg------~i~iw~~~~~-----~~~~~~~~~~ 298 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFP----DVLWRASWSLSGNVLALSGGDN------KVTLWKENLE-----GKWEPAGEVH 298 (379)
T ss_dssp TSCCEEEESSSSCCS----SCEEEEEECSSSCCEEEEESSS------SEEEEEEEET-----TEEEEEEEEC
T ss_pred CccceeeeeccccCC----CcEEEEEEcCCCCEEEEecCCC------cEEEEeCCCC-----Ccccccccee
Confidence 3 221 11111011 0111222 23666777776553 3778887753 5788776553
No 33
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.61 E-value=0.0092 Score=51.85 Aligned_cols=186 Identities=14% Similarity=0.026 Sum_probs=107.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++.+|+..|....+.+.++|+.+++-...-+++......+.+..++++|+..-. .+.+.+||+.+.+=.. .+
T Consensus 31 dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~~t~~v~~--~i 102 (266)
T 2iwa_A 31 NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------KNIGFIYDRRTLSNIK--NF 102 (266)
T ss_dssp TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------CSEEEEEETTTTEEEE--EE
T ss_pred CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------CCEEEEEECCCCcEEE--EE
Confidence 378999877655678999999999865433343333445677778999999542 4569999998775322 12
Q ss_pred CCC-CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCe
Q 016416 222 HSP-RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNM 299 (390)
Q Consensus 222 ~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~ 299 (390)
+.+ ..+.+.+.-++++|+.-| .+.+..+|+.+.+=. .+..-..+.. ......+...+|++|+-....+.
T Consensus 103 ~~g~~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p--~~~~nele~~dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 103 THQMKDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHR--VIRLNELEYINGEVWANIWQTDC 173 (266)
T ss_dssp ECCSSSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE--CCCEEEEEEETTEEEEEETTSSE
T ss_pred ECCCCCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcc--cccceeEEEECCEEEEecCCCCe
Confidence 222 122333333457887532 356888999886633 2221100000 00111344558999988777889
Q ss_pred EEEEeCCCCc---eEEccCCCcc----ccCC--CcceeEEEEeCCEEEEEcCCC
Q 016416 300 VKKYDKLKNT---WDVLGRLPVR----ADLS--NGWGLAFKACGNELLVVGGQR 344 (390)
Q Consensus 300 v~~yd~~~~~---W~~v~~~~~~----~~~~--~~~~~~~~~~~~~lyv~GG~~ 344 (390)
|.+-|+++++ |-.++.+... .... --.|.+...-++++||.|+..
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 9999999985 3333322100 0000 001233322357899999854
No 34
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.60 E-value=0.003 Score=54.55 Aligned_cols=151 Identities=11% Similarity=-0.073 Sum_probs=96.5
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016416 139 LAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
...++.+|+..|.. ..+.++|+.+++-...- ++......+++..+++||++... .+.+++||+.+.+-..-
T Consensus 61 ~~~~~~Ly~stG~~--g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 61 VFHQGHFFESTGHQ--GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEETTEEEEEETTT--TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEETTTTEEEEE
T ss_pred EEECCEEEEEcCCC--CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEECCcCcEEEE
Confidence 34578999888754 24899999998753333 44433445677889999998543 35699999998765331
Q ss_pred CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEEEECCEEEEEecCC
Q 016416 219 PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT 297 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~ 297 (390)
++.+..+.+.+.-++++|+.-| .+.+..+|+.+.+-.. +.....+.. -.....+...+|+||+---..
T Consensus 132 --i~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~--v~~lNeLe~~dG~lyanvw~s 200 (268)
T 3nok_A 132 --TRYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQP--VELINELECANGVIYANIWHS 200 (268)
T ss_dssp --EECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE--CCCEEEEEEETTEEEEEETTC
T ss_pred --EeCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcc--cccccccEEeCCEEEEEECCC
Confidence 2222234455566778888743 3468889999876432 221111000 001112455699999776667
Q ss_pred CeEEEEeCCCCc
Q 016416 298 NMVKKYDKLKNT 309 (390)
Q Consensus 298 ~~v~~yd~~~~~ 309 (390)
+.|.+-|+++++
T Consensus 201 ~~I~vIDp~TG~ 212 (268)
T 3nok_A 201 SDVLEIDPATGT 212 (268)
T ss_dssp SEEEEECTTTCB
T ss_pred CeEEEEeCCCCc
Confidence 899999999986
No 35
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.58 E-value=0.015 Score=50.17 Aligned_cols=225 Identities=13% Similarity=-0.062 Sum_probs=115.6
Q ss_pred ccEEEE-E-eCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCC
Q 016416 97 EHWVYL-V-CDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN 174 (390)
Q Consensus 97 ~~~l~~-~-~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~ 174 (390)
+..+|+ . .....+..||+.+.....+....... . . ...+..++.+|+... ...+++||+.+..........
T Consensus 34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-p-~--~i~~~~~g~l~v~~~---~~~i~~~d~~~~~~~~~~~~~ 106 (270)
T 1rwi_B 34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ-P-Q--GLAVDGAGTVYVTDF---NNRVVTLAAGSNNQTVLPFDG 106 (270)
T ss_dssp TCCEEEEECSSSCEEEEECC-----EECCCCSCCS-C-C--CEEECTTCCEEEEET---TTEEEEECTTCSCCEECCCCS
T ss_pred CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCC-c-c--eeEECCCCCEEEEcC---CCEEEEEeCCCceEeeeecCC
Confidence 345777 5 24567888888765544332211100 0 0 112223567887654 457899999877654432211
Q ss_pred CCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCce
Q 016416 175 HPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 175 ~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 252 (390)
.....+++.- ++++|+.... ...+.+||..+........... ......+.- +|++|+.... ...
T Consensus 107 -~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~------~~~ 172 (270)
T 1rwi_B 107 -LNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTD------NNR 172 (270)
T ss_dssp -CSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGG------GTE
T ss_pred -cCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECC------CCE
Confidence 1122233332 5778887542 2457888876665443321111 111223332 6788887532 246
Q ss_pred EEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016416 253 GEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 253 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
+.+||+.+..-........ .....++. -+|.+|+.....+.|.+||+.+..-..+.. . ... .. .+++
T Consensus 173 i~~~~~~~~~~~~~~~~~~------~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~-~-~~~---~p-~~i~ 240 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDI------TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF-T-GLN---TP-LAVA 240 (270)
T ss_dssp EEEECTTTCCEEECCCSSC------CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC-C-SCS---CE-EEEE
T ss_pred EEEEecCCCceEeecccCC------CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc-C-CCC---Cc-eeEE
Confidence 8889988766443321110 01112333 246899988777889999997765333221 1 100 01 2232
Q ss_pred E-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 332 A-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
. -+|+||+....++ .|.+|+...
T Consensus 241 ~~~~g~l~v~~~~~~------~v~~~~~~~ 264 (270)
T 1rwi_B 241 VDSDRTVYVADRGND------RVVKLTSLE 264 (270)
T ss_dssp ECTTCCEEEEEGGGT------EEEEECCCG
T ss_pred ECCCCCEEEEECCCC------EEEEEcCCC
Confidence 3 3578998876442 577888765
No 36
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.50 E-value=0.046 Score=48.86 Aligned_cols=230 Identities=11% Similarity=-0.027 Sum_probs=117.3
Q ss_pred ccEEEEEeC-------CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCcEe
Q 016416 97 EHWVYLVCD-------PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRSWM 168 (390)
Q Consensus 97 ~~~l~~~~~-------~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~W~ 168 (390)
...+|+... ...+..+|+.+.+....-+.... . ....+..+ +.+|+.+.. ...+.+||+.+++-.
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~---~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~ 124 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK--P---FGATINNTTQTLWFGNTV--NSAVTAIDAKTGEVK 124 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC--C---CSEEEETTTTEEEEEETT--TTEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC--c---ceEEECCCCCEEEEEecC--CCEEEEEeCCCCeeE
Confidence 356666642 34688899887654322111111 1 01123333 457776542 358999999988742
Q ss_pred ecCCCCCC-C-------cceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CC-E
Q 016416 169 KCEGMNHP-R-------CLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DG-K 236 (390)
Q Consensus 169 ~~~~~~~~-r-------~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~ 236 (390)
..-..... + ....++. -++.+|+.+... ...+.++|+.+++-...-+... ......+.. ++ .
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 125 GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTG-KMSTGLALDSEGKR 198 (353)
T ss_dssp EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCC-TTCCCCEEETTTTE
T ss_pred EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCC-CccceEEECCCCCE
Confidence 22111111 0 1122222 246677776321 2458999998876433212111 111222332 44 5
Q ss_pred EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016416 237 FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 237 iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
+|+... ...+..||+.+.+-........... ......++.. ++.+|+.+...+.+.+||+.+.+....-
T Consensus 199 l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 199 LYTTNA-------DGELITIDTADNKILSRKKLLDDGK--EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp EEEECT-------TSEEEEEETTTTEEEEEEECCCSSS--CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCC--CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 666532 2357789998876433222211100 0011123333 4568887777789999999888754433
Q ss_pred CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 315 RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..+.+ .+.++...++.+|+.+..++ .|.+||+.+
T Consensus 270 ~~~~~------~~~~~s~dg~~l~v~~~~~~------~v~~~d~~~ 303 (353)
T 3vgz_A 270 AAPES------LAVLFNPARNEAYVTHRQAG------KVSVIDAKS 303 (353)
T ss_dssp ECSSC------CCEEEETTTTEEEEEETTTT------EEEEEETTT
T ss_pred EcCCC------ceEEECCCCCEEEEEECCCC------eEEEEECCC
Confidence 33222 11222223456888775432 588899876
No 37
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.45 E-value=0.051 Score=50.74 Aligned_cols=193 Identities=17% Similarity=0.153 Sum_probs=99.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++..++.|+. ...+.+||..+.+-... +...........+++..++.|+.++ .+.+||..+++-... +
T Consensus 248 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~--~ 315 (445)
T 2ovr_B 248 DGRRVVSGAY--DFMVKVWDPETETCLHT--LQGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVETGNCIHT--L 315 (445)
T ss_dssp CSSCEEEEET--TSCEEEEEGGGTEEEEE--ECCCSSCEEEEEECSSEEEEEETTS------CEEEEETTTCCEEEE--E
T ss_pred CCCEEEEEcC--CCEEEEEECCCCcEeEE--ecCCCCceEEEEECCCEEEEEeCCC------eEEEEECCCCCEEEE--E
Confidence 4444444432 35677888776543221 1111122223334666666666543 488999987764321 1
Q ss_pred CCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEE
Q 016416 222 HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVK 301 (390)
Q Consensus 222 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~ 301 (390)
............++..++.|+.++ .+..||+.+.+-...-..+.. ..........++.+++.|+..+.|.
T Consensus 316 ~~~~~~v~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~l~s~~~dg~v~ 385 (445)
T 2ovr_B 316 TGHQSLTSGMELKDNILVSGNADS------TVKIWDIKTGQCLQTLQGPNK----HQSAVTCLQFNKNFVITSSDDGTVK 385 (445)
T ss_dssp CCCCSCEEEEEEETTEEEEEETTS------CEEEEETTTCCEEEEECSTTS----CSSCEEEEEECSSEEEEEETTSEEE
T ss_pred cCCcccEEEEEEeCCEEEEEeCCC------eEEEEECCCCcEEEEEccCCC----CCCCEEEEEECCCEEEEEeCCCeEE
Confidence 112222233444566666666442 477899887654322111110 0111233455778888888889999
Q ss_pred EEeCCCCceEE-ccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 302 KYDKLKNTWDV-LGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 302 ~yd~~~~~W~~-v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+||..+++... +......... +.-.++... ++.++++|+.++.. ...+++||.+.
T Consensus 386 iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~la~~~~dg~~--~~~l~v~df~~ 442 (445)
T 2ovr_B 386 LWDLKTGEFIRNLVTLESGGSG--GVVWRIRASNTKLVCAVGSRNGTE--ETKLLVLDFDV 442 (445)
T ss_dssp EEETTTCCEEEEEEECTTGGGT--CEEEEEEECSSEEEEEEECSSSSS--CCEEEEEECCC
T ss_pred EEECCCCceeeeeeccccCCCC--ceEEEEEecCCEEEEEEcccCCCC--ccEEEEEECCC
Confidence 99999887543 2111111110 111222222 55677777766542 23577888765
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.42 E-value=0.007 Score=53.79 Aligned_cols=183 Identities=14% Similarity=0.058 Sum_probs=96.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++..++.|+ ....+.+||..+.+......+....... .++. -++..++.|+.++ .+.+||..+++....-
T Consensus 108 ~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 108 DGCTLIVGG--EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG------NIAVWDLHNQTLVRQF 179 (337)
T ss_dssp TSSEEEEEE--SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEE
T ss_pred CCCEEEEEc--CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC------cEEEEeCCCCceeeee
Confidence 455555554 2457899999887743332222222111 2222 2556666666443 4889999887643321
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecC
Q 016416 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYL 296 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~ 296 (390)
.........+.. +++.++.++.+ ..+..||+.+.+-......... ...++. -+++++++++.
T Consensus 180 --~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 180 --QGHTDGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTSQ-------IFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp --CCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC-------EEEEEECTTSSEEEEEET
T ss_pred --ecccCceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecCCCc-------eEEEEECCCCCEEEEEcC
Confidence 111112223333 56666666543 3578899987754332211111 011222 35677778877
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+..||..+.+=..+...... -..+... ++++++.|+.++ .|.+||..+
T Consensus 245 ~~~i~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~dg------~i~~~~~~~ 296 (337)
T 1gxr_A 245 SSNVEVLHVNKPDKYQLHLHESC-------VLSLKFAYCGKWFVSTGKDN------LLNAWRTPY 296 (337)
T ss_dssp TSCEEEEETTSSCEEEECCCSSC-------EEEEEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred CCcEEEEECCCCCeEEEcCCccc-------eeEEEECCCCCEEEEecCCC------cEEEEECCC
Confidence 78899999988753333221111 1222222 566777776553 588899877
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.35 E-value=0.037 Score=48.78 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=111.8
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..+...+....+..+|....+....-. .. ......+. .++.+++.|+. ...+.+||..+.+-... +..
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~~~~~~~~--~h----~~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~--~~~ 105 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDGKFEKTIS--GH----KLGISDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKT--LKG 105 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEEC--CC----SSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEE--EEC
T ss_pred CEEEEeeCCCeEEEEeCCCcccchhhc--cC----CCceEEEEEcCCCCEEEEECC--CCEEEEEECCCCcEEEE--EcC
Confidence 334444445567777877665533211 10 01111222 24555566553 45788999887654221 111
Q ss_pred CCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCc
Q 016416 176 PRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 176 ~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
.......+. -++..++.|+.++ .+.+||..+++-... ++........+.. ++++++.|+.++
T Consensus 106 ~~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~------ 171 (312)
T 4ery_A 106 HSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDG------ 171 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCCC------
Confidence 111111111 2455666666543 488999987764321 1212122222333 566777766543
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016416 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
.+..||+.+.+-...-...... . ........+++.++.++..+.+..||..+.+-...-........ .......
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~ 245 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNP---P-VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 245 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCC---C-EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS--CCCEEEE
T ss_pred cEEEEECCCCceeeEEeccCCC---c-eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE--EEEEEEE
Confidence 4778999887643221111100 0 00011123566777777788999999987753332111111110 0111222
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 332 ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++.+++.|+.++ .|.+||.++
T Consensus 246 ~~~~~~l~sg~~dg------~i~vwd~~~ 268 (312)
T 4ery_A 246 VTGGKWIVSGSEDN------LVYIWNLQT 268 (312)
T ss_dssp CSSSCEEEECCTTS------CEEEEETTT
T ss_pred eCCCcEEEEECCCC------EEEEEECCC
Confidence 24677788887664 477899876
No 40
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.34 E-value=0.006 Score=55.84 Aligned_cols=182 Identities=12% Similarity=0.089 Sum_probs=97.5
Q ss_pred EEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--C-CEEEEEcccccCCeEEEEECCCCcEeecCCCC
Q 016416 99 WVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--G-SELLVFGRELFDFAIWKYSLVFRSWMKCEGMN 174 (390)
Q Consensus 99 ~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~-~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~ 174 (390)
.+|+.+ ....+..+|..+.+....-.... . ...++. + ..+|+.++. ...+.+||..+++....-...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~--~-----~~~~~~s~dg~~l~~~~~~--d~~i~v~d~~~~~~~~~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS--N-----PMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVIATVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS--S-----EEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEECS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC--C-----cceEEECCCCCEEEEECCC--CCeEEEEECCCCeEEEEEECC
Confidence 345544 35677888988765433211111 0 112222 3 456666643 357899999888764432222
Q ss_pred CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCCccC
Q 016416 175 HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTVSL 250 (390)
Q Consensus 175 ~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~ 250 (390)
. ....++.. +..||+.+.. ...+.+||..+++-...-.. .......+.. ++ .+|+.++.+
T Consensus 74 ~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~------ 137 (391)
T 1l0q_A 74 S--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGD------ 137 (391)
T ss_dssp S--SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTT------
T ss_pred C--CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCC------
Confidence 2 11222222 4456666543 24589999998875443221 1111222322 34 576765432
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEE
Q 016416 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~ 312 (390)
..+..||+.+.+....-..... ...++.. +..+|+.+...+.+.+||..+++-..
T Consensus 138 ~~v~~~d~~~~~~~~~~~~~~~-------~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 138 KTVSVINTVTKAVINTVSVGRS-------PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID 194 (391)
T ss_dssp TEEEEEETTTTEEEEEEECCSS-------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCcEEEEEecCCC-------cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 3688899988876543222111 0122222 33677777777899999998876544
No 41
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.34 E-value=0.0026 Score=58.37 Aligned_cols=178 Identities=12% Similarity=0.044 Sum_probs=97.0
Q ss_pred EEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 144 ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 144 ~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
.+|+.++. ...+.+||..+++-...-.... ...+++.. +..+|+.++.+ ..+.++|..+++....-..
T Consensus 3 ~l~vs~~~--d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANSE--SDNISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVIATVPA 72 (391)
T ss_dssp EEEEEETT--TTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCC--CCEEEEEECCCCeEEEEeecCC--CcceEEECCCCCEEEEECCCC------CeEEEEECCCCeEEEEEEC
Confidence 45666542 4578999998876533222111 11222222 34677776543 4588999988875443222
Q ss_pred CCCCcCceEEEE--CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CC-EEEEEecC
Q 016416 222 HSPRRLCSGFFM--DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DN-QLYAVEYL 296 (390)
Q Consensus 222 ~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~v~gg~ 296 (390)
+. ....+.. ++ .||+.+.. ...+.+||+.+++-......... ...++.. +| .+|+.+..
T Consensus 73 ~~---~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 73 GS---SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTGKS-------PLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp SS---SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECSSS-------EEEEEECTTSSEEEEEETT
T ss_pred CC---CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeCCCC-------cceEEECCCCCEEEEEeCC
Confidence 22 2222333 34 56665432 24588899998865433221110 1123332 33 57778877
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+.+||..+++....-...... ..++.. ++.||+.++.++ .|.+||+.+
T Consensus 137 ~~~v~~~d~~~~~~~~~~~~~~~~-------~~~~~~~dg~~l~~~~~~~~------~v~~~d~~~ 189 (391)
T 1l0q_A 137 DKTVSVINTVTKAVINTVSVGRSP-------KGIAVTPDGTKVYVANFDSM------SISVIDTVT 189 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECCSSE-------EEEEECTTSSEEEEEETTTT------EEEEEETTT
T ss_pred CCEEEEEECCCCcEEEEEecCCCc-------ceEEECCCCCEEEEEeCCCC------EEEEEECCC
Confidence 889999999888765432221111 122222 446777766442 578888876
No 42
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.33 E-value=0.08 Score=47.24 Aligned_cols=196 Identities=8% Similarity=-0.048 Sum_probs=95.3
Q ss_pred CCEEEEEcccc----cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016416 142 GSELLVFGREL----FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~----~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++.+|+..... ....++++|+.+.+....-+............-+..+|+.++.. ..+.++|+.+++-..
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~ 125 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKG 125 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEE
Confidence 35677665321 24578999998876533222111111111112245688876532 468999999887432
Q ss_pred cCCCCCC--------CcCceEEEE-C-CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC
Q 016416 218 LPSMHSP--------RRLCSGFFM-D-GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD 287 (390)
Q Consensus 218 ~~~~~~~--------r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
.-+.+.. ......+.. + +.+|+.+... ...++.||+.+.+-...-...... . .. ....-+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~---~-~~-~~~s~d 195 (353)
T 3vgz_A 126 RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKM---S-TG-LALDSE 195 (353)
T ss_dssp EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTT---C-CC-CEEETT
T ss_pred EEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCc---c-ce-EEECCC
Confidence 2111111 011223332 3 4677765221 245888999877643322211100 0 11 122334
Q ss_pred C-EEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 288 N-QLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 288 g-~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
| .+|+.+ ..+.+.+||..+.+-......+.........+.++...++.||+.+... ..|.+||+.+
T Consensus 196 g~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~ 262 (353)
T 3vgz_A 196 GKRLYTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA------AEVLVVDTRN 262 (353)
T ss_dssp TTEEEEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS------SEEEEEETTT
T ss_pred CCEEEEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC------CEEEEEECCC
Confidence 4 455554 4678999999887533322221110000001122212255687776432 2588899876
No 43
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.32 E-value=0.0019 Score=58.31 Aligned_cols=189 Identities=12% Similarity=0.035 Sum_probs=90.6
Q ss_pred eEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcc-eeee-ee-
Q 016416 109 WEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCL-FGSG-SL- 185 (390)
Q Consensus 109 ~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~-~~- 185 (390)
++.+|+.+.++..+......... ....+..++++|+.+.......+++||..+++++.+......... ..++ .-
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p---~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd 96 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNP---TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA 96 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCC---CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT
T ss_pred EEEEcCCCCeEEEeeeeeccCCc---ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC
Confidence 46678877776553222111111 011233466777765432345789999987777655432111111 1222 22
Q ss_pred CCEEEEEeccCCCCCccceEEEEECC-CCcEEEcCCC------CCCCc---CceEEEE--CCEEEEEecccCCCccCceE
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDST-TGRWEMLPSM------HSPRR---LCSGFFM--DGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~------~~~r~---~~~~~~~--~~~iyv~GG~~~~~~~~~~v 253 (390)
+..+|+.+.. ...+.+||.. .+..+.+... |.+|. ....+.+ +|++|+.+.. ...+
T Consensus 97 g~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~------~~~v 164 (347)
T 3hfq_A 97 RQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG------SDKV 164 (347)
T ss_dssp TTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT------TTEE
T ss_pred CCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC------CCEE
Confidence 3457776532 2346777764 3344332211 11111 1122222 6777765432 2357
Q ss_pred EEEeCC-CCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEecCCCeEEEEeCC--CCceEEcc
Q 016416 254 EEFDLE-TRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEYLTNMVKKYDKL--KNTWDVLG 314 (390)
Q Consensus 254 ~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg~~~~v~~yd~~--~~~W~~v~ 314 (390)
..||+. +++...+..........++ ..+..-+|+ +|+.+...+.+.+||.. ++++..+.
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~--~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 227 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPR--HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG 227 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEE--EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCc--eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence 788887 5665544321111000010 012223454 88877666777777665 46665543
No 44
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.30 E-value=0.015 Score=50.21 Aligned_cols=158 Identities=4% Similarity=-0.185 Sum_probs=98.6
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCC
Q 016416 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
+....++.||+..|..+ .+.++|+++++=..-- ++..-...+.+..+++||+.... .+.+++||+.+
T Consensus 59 GL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~~T 125 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSGMP 125 (268)
T ss_dssp EEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEETTT
T ss_pred eEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEECCc
Confidence 55666899999988643 2889999998743322 44333334456678999998543 35688999998
Q ss_pred CceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-cc--CCCccccCCCcceeEEEEeCCE
Q 016416 261 RKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-LG--RLPVRADLSNGWGLAFKACGNE 336 (390)
Q Consensus 261 ~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~--~~~~~~~~~~~~~~~~~~~~~~ 336 (390)
.+-. +++. +. .+.+++.-+++||+..| .+.+..+|+++.+-.. |. .-+.+.. .-..+...+|+
T Consensus 126 l~~~~ti~~-~~-------eGwGLt~Dg~~L~vSdG-s~~l~~iDp~T~~v~~~I~V~~~g~~v~----~lNeLe~~dG~ 192 (268)
T 3nok_A 126 PQRERTTRY-SG-------EGWGLCYWNGKLVRSDG-GTMLTFHEPDGFALVGAVQVKLRGQPVE----LINELECANGV 192 (268)
T ss_dssp TEEEEEEEC-SS-------CCCCEEEETTEEEEECS-SSEEEEECTTTCCEEEEEECEETTEECC----CEEEEEEETTE
T ss_pred CcEEEEEeC-CC-------ceeEEecCCCEEEEECC-CCEEEEEcCCCCeEEEEEEeCCCCcccc----cccccEEeCCE
Confidence 6643 2322 11 12346777889999986 8899999999976433 22 1111111 00123345889
Q ss_pred EEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016416 337 LLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 337 lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
||+---. ...|.+.||.++ ....|-.++
T Consensus 193 lyanvw~------s~~I~vIDp~TG---~V~~~Idl~ 220 (268)
T 3nok_A 193 IYANIWH------SSDVLEIDPATG---TVVGVIDAS 220 (268)
T ss_dssp EEEEETT------CSEEEEECTTTC---BEEEEEECH
T ss_pred EEEEECC------CCeEEEEeCCCC---cEEEEEECC
Confidence 9964432 237889999884 233455555
No 45
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.28 E-value=0.018 Score=53.83 Aligned_cols=186 Identities=14% Similarity=0.122 Sum_probs=103.2
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016416 139 LAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
+..++..++.|+. ...+.+||..+.+-... +........+...++.+++.|+.++ .+.+||..+++-...
T Consensus 139 ~~~d~~~l~~g~~--dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~ 208 (435)
T 1p22_A 139 LQYDDQKIVSGLR--DNTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDS------TVRVWDVNTGEMLNT 208 (435)
T ss_dssp EECCSSEEEEEES--SSCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS------CEEEEESSSCCEEEE
T ss_pred EEECCCEEEEEeC--CCeEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcCCC------eEEEEECCCCcEEEE
Confidence 3446666666653 45788999887664332 1222222233344777778887653 488999988765332
Q ss_pred CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEc-cCCCCCCCCcCCCCCEEEEECCEEEEEecCC
Q 016416 219 PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI-EGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT 297 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~ 297 (390)
+.........+..++..++.|+.++ .+..||..+..-... ..+... ......+..++..++.|+..
T Consensus 209 --~~~h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~s~~~d 275 (435)
T 1p22_A 209 --LIHHCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRRVLVGH-----RAAVNVVDFDDKYIVSASGD 275 (435)
T ss_dssp --ECCCCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEEEECCC-----SSCEEEEEEETTEEEEEETT
T ss_pred --EcCCCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeeeEecCC-----CCcEEEEEeCCCEEEEEeCC
Confidence 1122222333344555666666543 467788876542211 111110 01112334467777777778
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+.+||..+.+-.. .+..... ....+..++.+++.|+.++ .|.+||..+
T Consensus 276 g~i~vwd~~~~~~~~--~~~~~~~-----~v~~~~~~~~~l~~g~~dg------~i~iwd~~~ 325 (435)
T 1p22_A 276 RTIKVWNTSTCEFVR--TLNGHKR-----GIACLQYRDRLVVSGSSDN------TIRLWDIEC 325 (435)
T ss_dssp SEEEEEETTTCCEEE--EEECCSS-----CEEEEEEETTEEEEEETTS------CEEEEETTT
T ss_pred CeEEEEECCcCcEEE--EEcCCCC-----cEEEEEeCCCEEEEEeCCC------eEEEEECCC
Confidence 899999998875332 2211111 1233445677777777654 478899876
No 46
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.24 E-value=0.022 Score=49.41 Aligned_cols=154 Identities=14% Similarity=-0.017 Sum_probs=92.4
Q ss_pred eeeeeeC-CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeC
Q 016416 180 FGSGSLG-SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDL 258 (390)
Q Consensus 180 ~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 258 (390)
++..... +.+|+..|..+ .+.+.++|+.+++=...-+++......+.+..++++|+..-. .+.+.+||+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~ 93 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------KNIGFIYDR 93 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------CSEEEEEET
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------CCEEEEEEC
Confidence 4555544 89999877432 367999999999854432333333334556678899998432 456889999
Q ss_pred CCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-cc--CCCccccCCCcceeEEEEeCC
Q 016416 259 ETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-LG--RLPVRADLSNGWGLAFKACGN 335 (390)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~--~~~~~~~~~~~~~~~~~~~~~ 335 (390)
.+.+= +..++.. . ..+..++.-++++|+..| .+.+..+|+++.+=.. |. .-+.+.... -.+...++
T Consensus 94 ~t~~v--~~~i~~g-~---~~g~glt~Dg~~l~vs~g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~----nele~~dg 162 (266)
T 2iwa_A 94 RTLSN--IKNFTHQ-M---KDGWGLATDGKILYGSDG-TSILYEIDPHTFKLIKKHNVKYNGHRVIRL----NELEYING 162 (266)
T ss_dssp TTTEE--EEEEECC-S---SSCCEEEECSSSEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCE----EEEEEETT
T ss_pred CCCcE--EEEEECC-C---CCeEEEEECCCEEEEECC-CCeEEEEECCCCcEEEEEEECCCCcccccc----eeEEEECC
Confidence 87643 2222221 0 012245555677898875 7899999999876332 22 111111000 12233488
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 336 ELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+||+--... ..|.+.|+.+
T Consensus 163 ~lyvn~~~~------~~V~vID~~t 181 (266)
T 2iwa_A 163 EVWANIWQT------DCIARISAKD 181 (266)
T ss_dssp EEEEEETTS------SEEEEEETTT
T ss_pred EEEEecCCC------CeEEEEECCC
Confidence 999776432 2688899977
No 47
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.24 E-value=0.086 Score=45.74 Aligned_cols=221 Identities=11% Similarity=0.025 Sum_probs=116.2
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016416 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
+..+|+... ...+..||+. .+...+.. +... .....++ .++.+|+... ....+++||+. ++.......
T Consensus 25 ~g~l~v~~~~~~~v~~~d~~-~~~~~~~~-~~~~----~~~~~i~~~~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~ 95 (299)
T 2z2n_A 25 KGKVWITQHKANMISCINLD-GKITEYPL-PTPD----AKVMCLTISSDGEVWFTEN--AANKIGRITKK-GIIKEYTLP 95 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-CCEEEEEC-SSTT----CCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECS
T ss_pred CCCEEEEecCCCcEEEEcCC-CCeEEecC-Cccc----CceeeEEECCCCCEEEeCC--CCCeEEEECCC-CcEEEEeCC
Confidence 345666543 4678889988 66654331 1110 0112233 3567777643 13468899986 455443321
Q ss_pred CCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016416 174 NHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 174 ~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
.......+++.. ++.+|+.... ...+.+||+ +++...... +........+.. +|++|+.... .
T Consensus 96 ~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~------~ 161 (299)
T 2z2n_A 96 NPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYEL-PNKGSYPSFITLGSDNALWFTENQ------N 161 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEEC-SSTTCCEEEEEECTTSCEEEEETT------T
T ss_pred CcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecC-CCCCCCCceEEEcCCCCEEEEeCC------C
Confidence 111222233333 5788887532 235888998 666554321 211112223333 6788886421 2
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016416 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
..+.+||+ +++...+.. +... .....++. -+|++|+.....+.+.+||+ +++...+. ++..... . .+
T Consensus 162 ~~i~~~~~-~g~~~~~~~-~~~~----~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~~---~-~~ 229 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKI-PTPA----SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFK-IPTPNAR---P-HA 229 (299)
T ss_dssp TEEEEECT-TCCEEEEEC-SSTT----CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTCC---E-EE
T ss_pred CEEEEEcC-CCcEEEeeC-CCCC----CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEE-CCCCCCC---c-ee
Confidence 45888999 777765421 1110 01112333 25789988766789999999 77776542 2211110 1 22
Q ss_pred EEE-eCCEEEEEcCCCCCCCCeEEEeeecC
Q 016416 330 FKA-CGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 330 ~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
++. -+|+||+..... ..|.+||+
T Consensus 230 i~~~~~g~l~v~~~~~------~~i~~~d~ 253 (299)
T 2z2n_A 230 ITAGAGIDLWFTEWGA------NKIGRLTS 253 (299)
T ss_dssp EEECSTTCEEEEETTT------TEEEEEET
T ss_pred EEECCCCCEEEeccCC------ceEEEECC
Confidence 323 257888875322 14777887
No 48
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.23 E-value=0.066 Score=47.46 Aligned_cols=245 Identities=9% Similarity=0.035 Sum_probs=115.2
Q ss_pred ccEEEEEeCC-CeeEEEecC--CCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCc-EeecC
Q 016416 97 EHWVYLVCDP-RGWEAFDPM--KKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRS-WMKCE 171 (390)
Q Consensus 97 ~~~l~~~~~~-~~~~~~d~~--~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~ 171 (390)
...+++.+.. ..+..|+.. +.++..+..++..... ....+..+ +.+|+.+. ....+.+||...+. ...+.
T Consensus 49 g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~~~--~~~~i~~~d~~~~~~~~~~~ 123 (343)
T 1ri6_A 49 KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL---THISTDHQGQFVFVGSY--NAGNVSVTRLEDGLPVGVVD 123 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC---SEEEECTTSSEEEEEET--TTTEEEEEEEETTEEEEEEE
T ss_pred CCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC---cEEEEcCCCCEEEEEec--CCCeEEEEECCCCccccccc
Confidence 3456666543 667777765 5666554333321111 11122223 34666543 23467888873221 11111
Q ss_pred CCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCC-CcEEEcC----CCCCCCcCceEEEE--CC-EEEEEe
Q 016416 172 GMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTT-GRWEMLP----SMHSPRRLCSGFFM--DG-KFYVIG 241 (390)
Q Consensus 172 ~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~----~~~~~r~~~~~~~~--~~-~iyv~G 241 (390)
..+.......++.. +..+|+.+.. ...+.+||..+ ++...+. ..+... ....+.+ ++ .+|+.+
T Consensus 124 ~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 124 VVEGLDGCHSANISPDNRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEVTTVEGA-GPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp EECCCTTBCCCEECTTSSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEEECSTTC-CEEEEEECTTSSEEEEEE
T ss_pred cccCCCCceEEEECCCCCEEEEecCC------CCEEEEEEecCCCceeeecccccccCCCC-CcceEEECCCCCEEEEEe
Confidence 11111112222222 3467776532 24588999887 6665322 111111 1222333 44 477765
Q ss_pred cccCCCccCceEEEEeCC--CCceEEc---cCCCCCCCCcCCCCC-EEEEE-CC-EEEEEecCCCeEEEEeCC--CCceE
Q 016416 242 GMSSPTVSLTCGEEFDLE--TRKWRKI---EGMYPNVNRAAQAPP-LVAVV-DN-QLYAVEYLTNMVKKYDKL--KNTWD 311 (390)
Q Consensus 242 G~~~~~~~~~~v~~yd~~--~~~W~~~---~~~~~~~~~~~~~~~-~~~~~-~g-~l~v~gg~~~~v~~yd~~--~~~W~ 311 (390)
.. ...+..||.. +.++..+ ..++.... ....+ .++.. +| .||+.+...+.+.+||.. ++++.
T Consensus 197 ~~------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 197 EL------NSSVDVWELKDPHGNIECVQTLDMMPENFS--DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp TT------TTEEEEEESSCTTSCCEEEEEEECSCTTCC--SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CC------CCEEEEEEecCCCCcEEEEeeccccCcccc--ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 32 2357778874 4555332 22222100 00111 12222 34 677776667889999987 56677
Q ss_pred EccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeee--cCCCCCCCCCCceEEecccC
Q 016416 312 VLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSW--CPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 312 ~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y--~~~~~~~~~~~~W~~~~~~p 376 (390)
.+..++..... .+.++..-+..||+.++.++ .+.+| |+++ .+++.+...+
T Consensus 269 ~~~~~~~~~~~---~~~~~s~dg~~l~~~~~~~~------~v~v~~~d~~~------g~~~~~~~~~ 320 (343)
T 1ri6_A 269 KEGFQPTETQP---RGFNVDHSGKYLIAAGQKSH------HISVYEIVGEQ------GLLHEKGRYA 320 (343)
T ss_dssp EEEEEECSSSC---CCEEECTTSSEEEEECTTTC------EEEEEEEETTT------TEEEEEEEEE
T ss_pred EeeeecCCCcc---ceEEECCCCCEEEEecCCCC------eEEEEEEcCCC------ceeeEccccc
Confidence 76554432221 11222112345666664332 35555 6666 4688777653
No 49
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.22 E-value=0.03 Score=51.92 Aligned_cols=149 Identities=9% Similarity=0.021 Sum_probs=83.9
Q ss_pred EEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC--
Q 016416 146 LVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH-- 222 (390)
Q Consensus 146 y~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-- 222 (390)
|+.|.......++.+|+.+..+..+..++......+++.. ++.+++.++.+ ..+.++|+.+++.....+..
T Consensus 92 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~ 165 (433)
T 3bws_A 92 RIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKY 165 (433)
T ss_dssp EESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHH
T ss_pred eecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCcccc
Confidence 3334333445788899877766554433322222222222 67888877643 34899999988876543321
Q ss_pred -CCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCC
Q 016416 223 -SPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLT 297 (390)
Q Consensus 223 -~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~ 297 (390)
.+......+.. ++++++.++.+ ..+.+||+.+.+....-.... .....++.. +..+|+.+...
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~ 233 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDLTG------KWSKILLYDPIRDLVYCSNWIS 233 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEECSS------SSEEEEEEETTTTEEEEEETTT
T ss_pred cccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcCCC------CCeeEEEEcCCCCEEEEEecCC
Confidence 11112222333 78888887653 357889998865432211111 011123333 34577777677
Q ss_pred CeEEEEeCCCCceEE
Q 016416 298 NMVKKYDKLKNTWDV 312 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~ 312 (390)
+.+.+||+.+.+...
T Consensus 234 ~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 234 EDISVIDRKTKLEIR 248 (433)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred CcEEEEECCCCcEEE
Confidence 899999998876544
No 50
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.013 Score=59.13 Aligned_cols=241 Identities=9% Similarity=0.031 Sum_probs=121.8
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--C--CEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--G--SELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~--~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
..+...+....+..+|....++..+..+..+.. .-..+.. + +.+++.|+. +..+.+||..+++|..+..+
T Consensus 22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~----~V~~l~~s~~~~~~~l~s~s~--Dg~I~vwd~~~~~~~~~~~~ 95 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG----PVWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVH 95 (753)
T ss_dssp CCEEEEETTTEEEEEEEETTEEEEEEEECCCSS----CEEEEEECCTTSCSEEEEEET--TSCEEEEEEETTEEEEEEEE
T ss_pred CeEEEEECCCcEEEEecCCCCCccceeccCCcC----ceEEEEecCCCCCCEEEEEeC--CCeEEEEECCCCcccccccc
Confidence 445544456677888887666655433332211 1112222 2 555666653 45788999988887655444
Q ss_pred CCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---------------C
Q 016416 174 NHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---------------D 234 (390)
Q Consensus 174 ~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---------------~ 234 (390)
.........+.+ + +.+++.|+.+ ..+.+||..++.-.....+.........+.. +
T Consensus 96 ~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d 169 (753)
T 3jro_A 96 AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (753)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGG
T ss_pred cCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCC
Confidence 332222222222 2 5677777654 3478888876632111001111111112221 3
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCC--ceEEccCCCCCCCCcCCCCCEEEE-EC---CEEEEEecCCCeEEEEeCCCC
Q 016416 235 GKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNRAAQAPPLVAV-VD---NQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~-~~---g~l~v~gg~~~~v~~yd~~~~ 308 (390)
+.+++.|+.++ .+..||..+. .+..+..+.... .....++. -+ +.+++.|+..+.|.+||..+.
T Consensus 170 ~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~~~~h~----~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 170 SRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHS----DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp GCCEEEEETTS------CEEEEEEETTTTEEEEEEEECCCS----SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred CCEEEEEECCC------eEEEEeccCCcccceeeeeecCCC----CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 56666666543 3666776554 344333222211 01111222 23 788888888889999998775
Q ss_pred c--eEE-ccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016416 309 T--WDV-LGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 309 ~--W~~-v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
+ +.. +........ .-.+++ .-++..++.|+.++ .|.+|+..++ ..|..+...
T Consensus 240 ~~~~~~~~~~~~~~~~----~v~~l~~spdg~~l~s~s~Dg------~I~vwd~~~~-----~~~~~~~~~ 295 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPD----VLWRASWSLSGNVLALSGGDN------KVTLWKENLE-----GKWEPAGEV 295 (753)
T ss_dssp SSCCBCCBSSSSCCSS----CCCCEEECTTTCCEEEECSSS------CEECCBCCSS-----SCCBCCCCB
T ss_pred CCcceeEEeccCCCCC----ceEEEEEcCCCCEEEEEcCCC------EEEEEecCCC-----CCccccccc
Confidence 3 211 111111111 111222 23677778887654 4889998863 467766544
No 51
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.15 E-value=0.11 Score=45.16 Aligned_cols=222 Identities=7% Similarity=-0.017 Sum_probs=116.1
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016416 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
+..+|+... ...+..||+. .+...+. ++... .....++. ++.+|+.... ...++++|+ +++.......
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~~--~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GIIKEYT-LPNPD----SAPYGITEGPNGDIWFTEMN--GNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECTTSCEEEEETT--TTEEEEECT-TCCEEEEECS
T ss_pred CCCEEEeCCCCCeEEEECCC-CcEEEEe-CCCcC----CCceeeEECCCCCEEEEecC--CceEEEECC-CCCEEEecCC
Confidence 345666543 4568889986 3443332 12110 01122332 5678876432 357889999 6665543221
Q ss_pred CCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016416 174 NHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 174 ~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
.......+++.- ++.+|+.... ...+.+||+ +++..... .+........+.. +|+||+.... .
T Consensus 138 ~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~------~ 203 (299)
T 2z2n_A 138 NKGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVEII------G 203 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------T
T ss_pred CCCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEccC------C
Confidence 111122233332 5688886421 245889999 77776541 1222122233333 5788886432 3
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016416 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
..+.+||+ +++...+.. +.. ......++. -+|++|+.....+.|.+||+ +++...+. ++..... . .+
T Consensus 204 ~~i~~~~~-~g~~~~~~~-~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~-~~~~~~~---~-~~ 271 (299)
T 2z2n_A 204 NKIGRITT-SGEITEFKI-PTP----NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYP-IQIKSAE---P-HG 271 (299)
T ss_dssp TEEEEECT-TCCEEEEEC-SST----TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEE-CSSSSCC---E-EE
T ss_pred ceEEEECC-CCcEEEEEC-CCC----CCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEe-CCCCCCc---c-ce
Confidence 45888999 777765422 110 001112333 25789988766788999999 45544432 1211110 1 22
Q ss_pred EEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 330 FKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 330 ~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++..++.||+..... .+.+|++++
T Consensus 272 i~~~~g~l~v~~~~~-------~l~~~~~~~ 295 (299)
T 2z2n_A 272 ICFDGETIWFAMECD-------KIGKLTLIK 295 (299)
T ss_dssp EEECSSCEEEEETTT-------EEEEEEEC-
T ss_pred EEecCCCEEEEecCC-------cEEEEEcCc
Confidence 323678888876421 477888876
No 52
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.015 Score=52.59 Aligned_cols=191 Identities=9% Similarity=0.065 Sum_probs=101.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++.+++.|+. +..+.+||....++..+..+...........+ + +.+++.|+.++ .+.+||..++.|..
T Consensus 22 ~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~~~~ 93 (379)
T 3jrp_A 22 YGKRLATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQ 93 (379)
T ss_dssp SSSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEEETTEEEE
T ss_pred CCCEEEEEEC--CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEcCCCceeE
Confidence 3445555543 34677888776666554443322222222222 2 56666676543 48889999998876
Q ss_pred cCCCCCCCcCceEEEE--C--CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-------
Q 016416 218 LPSMHSPRRLCSGFFM--D--GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV------- 286 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~------- 286 (390)
+..+.........+.. + +.+++.|+.+ ..+..||..+..-.....+... ......++..
T Consensus 94 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAH----AIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECC----TTCEEEEEECCCC----
T ss_pred eeeecCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCC----CCceEEEEEcCcccccc
Confidence 5444433333333333 3 5666666553 3467788877632111000000 0000012221
Q ss_pred -------CCEEEEEecCCCeEEEEeCCCCc--eEEccCCCccccCCCcceeEEEEe-C---CEEEEEcCCCCCCCCeEEE
Q 016416 287 -------DNQLYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRADLSNGWGLAFKAC-G---NELLVVGGQRGPEGENVVL 353 (390)
Q Consensus 287 -------~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~-~---~~lyv~GG~~~~~~~~~~i 353 (390)
++.+++.|+..+.|.+||..++. |..+..+..... .-.+++.. + +.+++.|+.++ .|
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~~~l~s~~~dg------~i 233 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYLASVSQDR------TC 233 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTS------CE
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC----cEeEEEECCCCCCCCeEEEEeCCC------EE
Confidence 47788888888889999986653 555443332211 11222222 3 68888887664 37
Q ss_pred eeecCCC
Q 016416 354 NSWCPKS 360 (390)
Q Consensus 354 ~~y~~~~ 360 (390)
.+||..+
T Consensus 234 ~iwd~~~ 240 (379)
T 3jrp_A 234 IIWTQDN 240 (379)
T ss_dssp EEEEESS
T ss_pred EEEeCCC
Confidence 7888776
No 53
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.10 E-value=0.019 Score=53.18 Aligned_cols=217 Identities=10% Similarity=-0.033 Sum_probs=110.6
Q ss_pred eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCC---CCCcceeeee
Q 016416 108 GWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN---HPRCLFGSGS 184 (390)
Q Consensus 108 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~ 184 (390)
.++.+|+....+..+..++....... ..+..++.+++.++. ...+.+||+.+++.....+.. ........+.
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~ 176 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKS---VRFIDNTRLAIPLLE--DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS 176 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCC---CEESSSSEEEEEBTT--SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcceEEEEEcCCCCceE---EEEeCCCeEEEEeCC--CCeEEEEECCCCeEeeecCcccccccCCceeEEE
Confidence 56777876665544433332211111 122336777777653 346899999988765533221 1111112222
Q ss_pred --eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCC
Q 016416 185 --LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 185 --~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
-++.+++.++.+ ..+.+||..+++....-... .......+.. +..+|+.++.+ ..+..||+.+
T Consensus 177 ~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~ 243 (433)
T 3bws_A 177 IPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDLT-GKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKT 243 (433)
T ss_dssp EGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEECS-SSSEEEEEEETTTTEEEEEETTT------TEEEEEETTT
T ss_pred EcCCCEEEEEECCC------CEEEEEECCCceEEEEEcCC-CCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCC
Confidence 267888887643 45889999887643321111 1111222232 34566665432 3588899988
Q ss_pred CceEEccCCCCCCCCcCCCCCEEEE-ECC-EEEEEec-------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016416 261 RKWRKIEGMYPNVNRAAQAPPLVAV-VDN-QLYAVEY-------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 261 ~~W~~~~~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg-------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
.+....-..... ...++. -+| .+++.+. ..+.|.+||+.+.+-......+... .+.+..
T Consensus 244 ~~~~~~~~~~~~-------~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~ 311 (433)
T 3bws_A 244 KLEIRKTDKIGL-------PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK-----RHIVSG 311 (433)
T ss_dssp TEEEEECCCCSE-------EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE-----EEEEEC
T ss_pred CcEEEEecCCCC-------ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc-----ceEEEC
Confidence 765433222110 011222 244 4554442 2358999999887543332111111 011211
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 332 ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++.+|+.++.++ .|.+||+++
T Consensus 312 ~~g~~l~~~~~~~~------~v~v~d~~~ 334 (433)
T 3bws_A 312 NTENKIYVSDMCCS------KIEVYDLKE 334 (433)
T ss_dssp SSTTEEEEEETTTT------EEEEEETTT
T ss_pred CCCCEEEEEecCCC------EEEEEECCC
Confidence 12347888876543 578888876
No 54
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.09 E-value=0.12 Score=44.72 Aligned_cols=231 Identities=11% Similarity=0.074 Sum_probs=115.3
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016416 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
..+|+.. ....+..||+.......+....... ........++. ++.+|+.+.. ....+.+||+....-..+...
T Consensus 41 g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-~~~~~p~~i~~~~~~g~l~v~~~~-~~~~i~~~d~~g~~~~~~~~~ 118 (286)
T 1q7f_A 41 NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRD-SQLLYPNRVAVVRNSGDIIVTERS-PTHQIQIYNQYGQFVRKFGAT 118 (286)
T ss_dssp CCEEEEEGGGTEEEEECTTSCEEEEECCBSSST-TCBSSEEEEEEETTTTEEEEEECG-GGCEEEEECTTSCEEEEECTT
T ss_pred CCEEEEECCCCEEEEECCCCcEEEEecccCCCc-ccccCceEEEEEcCCCeEEEEcCC-CCCEEEEECCCCcEEEEecCc
Confidence 4566653 3456888998754333332211000 00111122333 6788887632 135788999654433333221
Q ss_pred CCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016416 174 NHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 174 ~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
.. ....+++. -++.+|+.... ...+.+||+.......+... ........+.+ +|++|+.... .
T Consensus 119 ~~-~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~------~ 184 (286)
T 1q7f_A 119 IL-QHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCS-KHLEFPNGVVVNDKQEIFISDNR------A 184 (286)
T ss_dssp TC-SCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECT-TTCSSEEEEEECSSSEEEEEEGG------G
T ss_pred cC-CCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCC-CccCCcEEEEECCCCCEEEEECC------C
Confidence 11 11223332 25788887542 24588899765544443211 11112233333 5899987543 3
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCC-eEEEEeCCCCceEEccCCCccccCCCccee
Q 016416 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTN-MVKKYDKLKNTWDVLGRLPVRADLSNGWGL 328 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~-~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~ 328 (390)
..+.+||+.......+...... .....++. -+|++|+.+...+ .|.+||+....-..+..-...... .+.
T Consensus 185 ~~i~~~~~~g~~~~~~~~~g~~-----~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~---~~i 256 (286)
T 1q7f_A 185 HCVKVFNYEGQYLRQIGGEGIT-----NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQC---FDV 256 (286)
T ss_dssp TEEEEEETTCCEEEEESCTTTS-----CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCE---EEE
T ss_pred CEEEEEcCCCCEEEEEccCCcc-----CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcc---eeE
Confidence 4688899866544444321100 01112333 3678999887665 899999866543333211110000 112
Q ss_pred EEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 329 AFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 329 ~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++.-+++||+... + ..|.+|+...
T Consensus 257 -~~~~~g~l~vs~~-~------~~v~v~~~~~ 280 (286)
T 1q7f_A 257 -ALMDDGSVVLASK-D------YRLYIYRYVQ 280 (286)
T ss_dssp -EEETTTEEEEEET-T------TEEEEEECSC
T ss_pred -EECCCCcEEEECC-C------CeEEEEEccc
Confidence 2234789998853 2 1466776644
No 55
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.08 E-value=0.023 Score=51.58 Aligned_cols=226 Identities=11% Similarity=0.033 Sum_probs=105.1
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..+++.+....+..+|..+.+-........ ..+...-..+. .++..++.|+. ...+.+||..+++-... +..
T Consensus 106 ~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~--~~h~~~V~~v~~spdg~~l~sgs~--dg~v~iwd~~~~~~~~~--~~~ 179 (357)
T 4g56_B 106 KGILVASDSGAVELWEILEKESLLVNKFAK--YEHDDIVKTLSVFSDGTQAVSGGK--DFSVKVWDLSQKAVLKS--YNA 179 (357)
T ss_dssp TEEEEEETTSCEEEC--------CCCCEEE--CCCSSCEEEEEECSSSSEEEEEET--TSCEEEEETTTTEEEEE--ECC
T ss_pred CCEEEEECCCEEEEeeccccceeEEEeecc--CCCCCCEEEEEECCCCCEEEEEeC--CCeEEEEECCCCcEEEE--EcC
Confidence 444444455567777776553222111110 01111111222 25555666653 45788999988764332 111
Q ss_pred CCcce-eeee-e-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCCcc
Q 016416 176 PRCLF-GSGS-L-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 176 ~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 249 (390)
..... +++. . +..+++.++.++ .+.+||..+++-...-...........+.. ++.+++.|+.++
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~---- 249 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDG------RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG---- 249 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTS------CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS----
T ss_pred CCCCEEEEEEccCCCceeeeeccCC------ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc----
Confidence 11111 2222 1 234666666543 378889887654332222222222233333 356666666432
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CC-EEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcce
Q 016416 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DN-QLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWG 327 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~ 327 (390)
.+..||+.+.+-.. .+... ......++.. ++ ++++.|+.-+.|.+||..+.+-.... ... ..-
T Consensus 250 --~i~~wd~~~~~~~~--~~~~~----~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~-----~~V 314 (357)
T 4g56_B 250 --NVSLVNIKNPDSAQ--TSAVH----SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHR-----DFV 314 (357)
T ss_dssp --CEEEEESSCGGGCE--EECCC----SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCS-----SCE
T ss_pred --ceeEEECCCCcEeE--EEecc----ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCC-----CCE
Confidence 46778887654211 11110 0011122221 33 56666767788999999887644322 111 111
Q ss_pred eEEEE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 328 LAFKA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 328 ~~~~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+++. .++.+++.||.++ .|.+|+..+
T Consensus 315 ~~vafsP~d~~~l~s~s~Dg------~v~iW~~~~ 343 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGWDH------KVLHHHLPS 343 (357)
T ss_dssp EEEEECSSSTTEEEEEETTS------CEEEEECC-
T ss_pred EEEEEeCCCCCEEEEEcCCC------eEEEEECCC
Confidence 22322 3677888888764 477898765
No 56
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.06 E-value=0.28 Score=48.71 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=71.4
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCC--------CcceeeeeeCCEEEEEeccCCCCCccceEEEE
Q 016416 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHP--------RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
+..++.||+... ...++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+..+
T Consensus 74 ~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~al 143 (677)
T 1kb0_A 74 VVVDGIMYVSAS---WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLIAL 143 (677)
T ss_dssp EEETTEEEEECG---GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEEEE
T ss_pred EEECCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEEEE
Confidence 567899998765 3478899998875 8664432210 112244566888888632 2458999
Q ss_pred ECCCCc--EEEcCC-CCC--CCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEc
Q 016416 209 DSTTGR--WEMLPS-MHS--PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKI 266 (390)
Q Consensus 209 d~~t~~--W~~~~~-~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 266 (390)
|..+++ |+.-.. -.. .....+.++.++.||+..+.... .....++.||..|++ |+.-
T Consensus 144 D~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEec
Confidence 999886 876422 111 11222344678998886442211 124568999998875 8653
No 57
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.03 E-value=0.14 Score=44.39 Aligned_cols=222 Identities=12% Similarity=0.022 Sum_probs=117.7
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016416 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
+..+|+.. ....+..||+. .+...+. ++... .....++. ++.+|+... ....+.+||+. +++......
T Consensus 30 ~g~l~v~~~~~~~v~~~~~~-~~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~--~~~~v~~~d~~-g~~~~~~~~ 100 (300)
T 2qc5_A 30 DGKVWFTQHKANKISSLDQS-GRIKEFE-VPTPD----AKVMCLIVSSLGDIWFTEN--GANKIGKLSKK-GGFTEYPLP 100 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECS
T ss_pred CCCEEEEcCCCCeEEEECCC-CceEEEE-CCCCC----CcceeEEECCCCCEEEEec--CCCeEEEECCC-CCeEEecCC
Confidence 45577765 35678889988 6555432 12110 01122332 567877642 23578999988 666544321
Q ss_pred CCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016416 174 NHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 174 ~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
.......+++.- ++.+|+.... ...+.+||+. ++..... ++........+.. +|++|+.... .
T Consensus 101 ~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~------~ 166 (300)
T 2qc5_A 101 QPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ------N 166 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------T
T ss_pred CCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC------C
Confidence 111222333332 5788887532 2358889987 6655432 2212122233333 5788886421 2
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016416 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
..+.+||+ +++...+.. +... .....++.- +|.||+.....+.+.+||+ +++...... +..... . .+
T Consensus 167 ~~i~~~~~-~g~~~~~~~-~~~~----~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~-~~~~~~---~-~~ 234 (300)
T 2qc5_A 167 NSIGRITN-TGKLEEYPL-PTNA----AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI-PTPNAR---P-HA 234 (300)
T ss_dssp TEEEEECT-TCCEEEEEC-SSTT----CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC-SSTTCC---E-EE
T ss_pred CeEEEECC-CCcEEEeeC-CCCC----CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC-CCCCCC---c-eE
Confidence 45888998 667665432 1110 011123332 5789998766778999998 666665421 211110 1 22
Q ss_pred EEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016416 330 FKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 330 ~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
++. -+++||+..... ..|.+||++
T Consensus 235 i~~d~~g~l~v~~~~~------~~i~~~~~~ 259 (300)
T 2qc5_A 235 ITAGKNSEIWFTEWGA------NQIGRITND 259 (300)
T ss_dssp EEECSTTCEEEEETTT------TEEEEECTT
T ss_pred EEECCCCCEEEeccCC------CeEEEECCC
Confidence 322 257788876422 147788873
No 58
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.02 E-value=0.1 Score=45.53 Aligned_cols=193 Identities=14% Similarity=0.018 Sum_probs=102.6
Q ss_pred CEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEc
Q 016416 143 SELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEML 218 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 218 (390)
+.+++.+. ....+.++|+.+++ |+.-..-. .........-++++++.+ ...+..||+ +++ |+.-
T Consensus 5 ~~~lv~~~--~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~~W~~~ 72 (276)
T 3no2_A 5 QHLLVGGS--GWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY--------SKGAKMITR-DGRELWNIA 72 (276)
T ss_dssp CEEEEECT--TCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC--------BSEEEEECT-TSCEEEEEE
T ss_pred CcEEEeeC--CCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC--------CCCEEEECC-CCCEEEEEc
Confidence 45556554 24678889987775 65432210 122223333477888732 245889999 554 7654
Q ss_pred CCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCC-ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC
Q 016416 219 PSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETR-KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL 296 (390)
Q Consensus 219 ~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~ 296 (390)
.+ .....+++.. -+|++++..... ...++.+|+... .|+.-...... .............+|.+++....
T Consensus 73 ~~--~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~-~~~~~~~~v~~~~~G~~lv~~~~ 144 (276)
T 3no2_A 73 AP--AGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIE-RPHAQFRQINKNKKGNYLVPLFA 144 (276)
T ss_dssp CC--TTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCS-SGGGSCSCCEECTTSCEEEEETT
T ss_pred CC--CCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCC-cccccccCceECCCCCEEEEecC
Confidence 32 1111222332 377777764321 235777887443 24321111000 00001111234456777777777
Q ss_pred CCeEEEEeCCCC-ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016416 297 TNMVKKYDKLKN-TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 297 ~~~v~~yd~~~~-~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.+.|.+||++.+ .|+.-.. ... + ......+|.+++.+... ..|..+|+++ ++..|+.-.
T Consensus 145 ~~~v~~~d~~G~~~w~~~~~--~~~-----~-~~~~~~~g~~~v~~~~~------~~v~~~d~~t----G~~~w~~~~ 204 (276)
T 3no2_A 145 TSEVREIAPNGQLLNSVKLS--GTP-----F-SSAFLDNGDCLVACGDA------HCFVQLNLES----NRIVRRVNA 204 (276)
T ss_dssp TTEEEEECTTSCEEEEEECS--SCC-----C-EEEECTTSCEEEECBTT------SEEEEECTTT----CCEEEEEEG
T ss_pred CCEEEEECCCCCEEEEEECC--CCc-----c-ceeEcCCCCEEEEeCCC------CeEEEEeCcC----CcEEEEecC
Confidence 789999999844 3765332 111 1 12333477888877643 1488999997 456788653
No 59
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.99 E-value=0.035 Score=49.12 Aligned_cols=186 Identities=11% Similarity=0.003 Sum_probs=94.3
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..++..+....+..+|..+.+......+..... ....+. .++..++.|+. ...+.+||..+.+....-....
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~~~~ 183 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSS----CEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCS
T ss_pred CEEEEEcCCCcEEEEECCCCCcceeeecccCCC----ceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCceeeeeeccc
Confidence 344444445678888888765432222211110 011122 24555555542 3578899988876433211111
Q ss_pred CCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceE
Q 016416 176 PRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 176 ~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v 253 (390)
. ....++. -++..++.|+.+ ..+.+||..+++-...-..+.+ -...+. -+++++++|+.++ .+
T Consensus 184 ~-~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~~~------~i 248 (337)
T 1gxr_A 184 D-GASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTSQ--IFSLGYCPTGEWLAVGMESS------NV 248 (337)
T ss_dssp S-CEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC--EEEEEECTTSSEEEEEETTS------CE
T ss_pred C-ceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecCCCc--eEEEEECCCCCEEEEEcCCC------cE
Confidence 1 1112222 155566666543 3588999987764332111111 112222 2566666665432 47
Q ss_pred EEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceE
Q 016416 254 EEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWD 311 (390)
Q Consensus 254 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~ 311 (390)
..||..+..-..+...... ...++. -++++++.++..+.+.+||..+++-.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 249 EVLHVNKPDKYQLHLHESC-------VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEETTSSCEEEECCCSSC-------EEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEECCCCCeEEEcCCccc-------eeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 7899887764433221110 111222 25677777777889999999887644
No 60
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.98 E-value=0.095 Score=44.87 Aligned_cols=183 Identities=12% Similarity=-0.018 Sum_probs=96.4
Q ss_pred CCEEEE-EcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLV-FGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~-~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+|+ ... ....+.+||+.+........... ....+++.. ++.+|+... . ..+.+||+.++....+.
T Consensus 34 ~g~l~v~~~~--~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~------~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 34 AGNVYVTSEG--MYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N------NRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp TCCEEEEECS--SSCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T------TEEEEECTTCSCCEECC
T ss_pred CCCEEEEccC--CCCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C------CEEEEEeCCCceEeeee
Confidence 567887 432 23578889987766544332111 112233332 567888754 1 35889998877655443
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecC
Q 016416 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYL 296 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~ 296 (390)
... ......+.+ +|++|+.... ...+.+||..+........... .....++.. +|++|+.+..
T Consensus 104 ~~~--~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~------~~p~~i~~~~~g~l~v~~~~ 169 (270)
T 1rwi_B 104 FDG--LNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGL------NDPDGVAVDNSGNVYVTDTD 169 (270)
T ss_dssp CCS--CSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSC------CSCCCEEECTTCCEEEEEGG
T ss_pred cCC--cCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccccC------CCceeEEEeCCCCEEEEECC
Confidence 211 112223333 6788887532 2357778877665543321110 011124433 5789998877
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.|.+||+.+..-........ . .-.+++.. +|.||+.....+ .|.+|+++.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~--~----~p~~i~~d~~g~l~v~~~~~~------~v~~~~~~~ 222 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDI--T----APWGIAVDEAGTVYVTEHNTN------QVVKLLAGS 222 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSC--C----SEEEEEECTTCCEEEEETTTS------CEEEECTTC
T ss_pred CCEEEEEecCCCceEeecccCC--C----CceEEEECCCCCEEEEECCCC------cEEEEcCCC
Confidence 7899999998776443321110 1 01233333 568888875331 377888866
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.94 E-value=0.079 Score=47.63 Aligned_cols=241 Identities=11% Similarity=0.046 Sum_probs=114.1
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
..++..+....+..||....++..+..+...... .....+..++.+++.|+. ...+.+||..++++.....+....
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~ 96 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--VTGVDWAPDSNRIVTCGT--DRNAYVWTLKGRTWKPTLVILRIN 96 (372)
T ss_dssp SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC--EEEEEEETTTTEEEEEET--TSCEEEEEEETTEEEEEEECCCCS
T ss_pred CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCc--ccEEEEeCCCCEEEEEcC--CCeEEEEECCCCeeeeeEEeecCC
Confidence 3444444567788899888765444333321111 001112224555555553 357888998888765443222222
Q ss_pred cceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCCCCCC-CcCceEEEE--CCEEEEEecccCCCccCc
Q 016416 178 CLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPSMHSP-RRLCSGFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 178 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
.....+.+ ++..++.|+.++ .+.+||..++. |........+ ......+.. +++.++.|+.++
T Consensus 97 ~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------ 164 (372)
T 1k8k_C 97 RAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF------ 164 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS------
T ss_pred CceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC------
Confidence 22222222 456666666442 36666666553 3222211111 112222222 566667666542
Q ss_pred eEEEEeCCCCc---------e-------EEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016416 252 CGEEFDLETRK---------W-------RKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 252 ~v~~yd~~~~~---------W-------~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
.+..||+.... | ..+..+... ......++. -++..++.++..+.+.+||..+.+-...
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~- 239 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS----CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT- 239 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC----SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE-
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCC----CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE-
Confidence 46678854211 1 111111110 000111222 2566777777778999999987653322
Q ss_pred CCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016416 315 RLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 315 ~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
+..... .-.++. .-++++++.| .++ .|.+|+..+ ...+|..+..+
T Consensus 240 -~~~~~~----~v~~~~~~~~~~~l~~~-~d~------~i~i~~~~~----~~~~~~~~~~~ 285 (372)
T 1k8k_C 240 -LASETL----PLLAVTFITESSLVAAG-HDC------FPVLFTYDS----AAGKLSFGGRL 285 (372)
T ss_dssp -EECSSC----CEEEEEEEETTEEEEEE-TTS------SCEEEEEET----TTTEEEECCCC
T ss_pred -EccCCC----CeEEEEEecCCCEEEEE-eCC------eEEEEEccC----cCceEEEeecc
Confidence 111110 001222 2367766666 332 366777765 11257665443
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.91 E-value=0.17 Score=45.39 Aligned_cols=195 Identities=11% Similarity=0.108 Sum_probs=92.4
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCc-EeecCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRS-WMKCEGMN 174 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~~~~ 174 (390)
..++..+....+..+|..+.++.....+..... ....+. .++..++.|+. ...+.+||..+.. |.......
T Consensus 65 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR----AARCVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp TEEEEEETTSCEEEEEEETTEEEEEEECCCCSS----CEEEEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC----ceeEEEECCCCCEEEEEeC--CCEEEEEEecCCCcceeeeeee
Confidence 344444445677888887776543322211110 111222 24555555553 3456677666543 32221111
Q ss_pred C--CCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCc---------E-------EEcCCCCCCCcCceEEEE--
Q 016416 175 H--PRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGR---------W-------EMLPSMHSPRRLCSGFFM-- 233 (390)
Q Consensus 175 ~--~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---------W-------~~~~~~~~~r~~~~~~~~-- 233 (390)
. ...-.+++.. ++..++.|+.++ .+.+||..... | +.+..+.........+..
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCC------CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 1 1111122222 566667776543 47788854211 1 111111111112222333
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCC--CceE
Q 016416 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLK--NTWD 311 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~--~~W~ 311 (390)
++..++.|+.+ ..+..||..+.+-...-..... . .......-++++++.| ..+.+.+||..+ ++|.
T Consensus 213 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~----~-v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~ 280 (372)
T 1k8k_C 213 NGSRVAWVSHD------STVCLADADKKMAVATLASETL----P-LLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLS 280 (372)
T ss_dssp SSSEEEEEETT------TEEEEEEGGGTTEEEEEECSSC----C-EEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEE
T ss_pred CCCEEEEEeCC------CEEEEEECCCCceeEEEccCCC----C-eEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEE
Confidence 55566666543 3477889877653321111110 0 0011223477866666 677889999888 8898
Q ss_pred EccCC
Q 016416 312 VLGRL 316 (390)
Q Consensus 312 ~v~~~ 316 (390)
.+..+
T Consensus 281 ~~~~~ 285 (372)
T 1k8k_C 281 FGGRL 285 (372)
T ss_dssp ECCCC
T ss_pred Eeecc
Confidence 76544
No 63
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.88 E-value=0.19 Score=43.52 Aligned_cols=220 Identities=10% Similarity=0.035 Sum_probs=115.0
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016416 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
+..+|+... ...+..||+. .+...+. ++... .....++. ++.+|+... ....+++||+. ++.......
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~-~~~~~----~~~~~i~~~~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFTEYP-LPQPD----SGPYGITEGLNGDIWFTQL--NGDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEE-CSSTT----CCEEEEEECSTTCEEEEET--TTTEEEEECTT-SCEEEEECS
T ss_pred CCCEEEEecCCCeEEEECCC-CCeEEec-CCCCC----CCCccceECCCCCEEEEcc--CCCeEEEECCC-CCEEEccCC
Confidence 345666653 4668889988 5554332 11110 01122332 567887642 23478899987 665443211
Q ss_pred CCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016416 174 NHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 174 ~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
.......+++. -++++|+.... ...+.+||+ +++...+. ++........+.. +|.||+.... .
T Consensus 143 ~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~------~ 208 (300)
T 2qc5_A 143 NKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVEIM------G 208 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT------T
T ss_pred CCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEccC------C
Confidence 11112223333 25678886431 245889998 67766542 2222222333333 5788886422 2
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016416 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
..+.+||+ ++++..... +... .....++. -+|+||+.....+.|.+||+ +++..... ++...... .+
T Consensus 209 ~~i~~~~~-~g~~~~~~~-~~~~----~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~~~----~~ 276 (300)
T 2qc5_A 209 NKIGRITT-TGEISEYDI-PTPN----ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQ-LQTENAEP----HG 276 (300)
T ss_dssp TEEEEECT-TCCEEEEEC-SSTT----CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEE-CCSTTCCC----CC
T ss_pred CEEEEEcC-CCcEEEEEC-CCCC----CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEE-CCccCCcc----ce
Confidence 35788998 666665432 1110 01112332 25789998866789999998 45655432 22111111 12
Q ss_pred EEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016416 330 FKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 330 ~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
++. -+|+||+.+. . .|..|||+
T Consensus 277 i~~~~~g~l~v~~~-~-------~i~~~~p~ 299 (300)
T 2qc5_A 277 ITFGKDGSVWFALK-C-------KIGKLNLN 299 (300)
T ss_dssp EEECTTSCEEEECS-S-------EEEEEEEC
T ss_pred eEeCCCCCEEEEcc-C-------ceEEeCCC
Confidence 333 3678888664 2 37777774
No 64
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.87 E-value=0.22 Score=50.36 Aligned_cols=187 Identities=5% Similarity=-0.001 Sum_probs=103.7
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCcEeecCCCCC-
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH- 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~- 175 (390)
..|++......+..||+.+.++..+.....+ ...-..+... ++.|++... .-+++||+.+++|......+.
T Consensus 418 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~---~~~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~ 490 (781)
T 3v9f_A 418 GNLWFGTYLGNISYYNTRLKKFQIIELEKNE---LLDVRVFYEDKNKKIWIGTH----AGVFVIDLASKKVIHHYDTSNS 490 (781)
T ss_dssp SCEEEEETTEEEEEECSSSCEEEECCSTTTC---CCCEEEEEECTTSEEEEEET----TEEEEEESSSSSCCEEECTTTS
T ss_pred CCEEEEeccCCEEEEcCCCCcEEEeccCCCC---CCeEEEEEECCCCCEEEEEC----CceEEEeCCCCeEEecccCccc
Confidence 4455543346788899998888776532110 0010112222 467766432 468999999998866543221
Q ss_pred ---CCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC-CCCcCceEEEE--CCEEEEEecccCCCc
Q 016416 176 ---PRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH-SPRRLCSGFFM--DGKFYVIGGMSSPTV 248 (390)
Q Consensus 176 ---~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~ 248 (390)
.....++.. -++.|++. ... .-+.+||+.+++++...... .+......+.. +|.|++...
T Consensus 491 ~~~~~~i~~i~~d~~g~lWig-t~~------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~------ 557 (781)
T 3v9f_A 491 QLLENFVRSIAQDSEGRFWIG-TFG------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG------ 557 (781)
T ss_dssp SCSCSCEEEEEECTTCCEEEE-ESS------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET------
T ss_pred ccccceeEEEEEcCCCCEEEE-EcC------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC------
Confidence 111112222 24666664 221 22788999999988764311 11111122222 567777532
Q ss_pred cCceE-EEEeCCCCceEEccC---CCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016416 249 SLTCG-EEFDLETRKWRKIEG---MYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 249 ~~~~v-~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
..+ .+||+.++++..... ++.. ...+++. .+|.|++.+ .+.+.+||+++.++....
T Consensus 558 --~Glv~~~d~~~~~~~~~~~~~gl~~~------~i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 558 --EGLVCFPSARNFDYQVFQRKEGLPNT------HIRAISEDKNGNIWAST--NTGISCYITSKKCFYTYD 618 (781)
T ss_dssp --TEEEEESCTTTCCCEEECGGGTCSCC------CCCEEEECSSSCEEEEC--SSCEEEEETTTTEEEEEC
T ss_pred --CCceEEECCCCCcEEEccccCCCCCc------eEEEEEECCCCCEEEEc--CCceEEEECCCCceEEec
Confidence 235 789999998876542 2221 1112332 357888875 356999999999887764
No 65
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.84 E-value=0.04 Score=49.79 Aligned_cols=226 Identities=10% Similarity=0.033 Sum_probs=107.2
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..+...+....+..+|..+.+-........ ..+...-..++ .++..++.|+. ...+.+||..+++-... +..
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~--~~H~~~V~~v~~spdg~~l~sgs~--d~~i~iwd~~~~~~~~~--~~~ 167 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENETLIVSKFCK--YEHDDIVSTVSVLSSGTQAVSGSK--DICIKVWDLAQQVVLSS--YRA 167 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSSCEEEEEEE--ECCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEE--ECC
T ss_pred CeEEEEECCCEEEEEeccCCCceeEeeccc--cCCCCCEEEEEECCCCCEEEEEeC--CCeEEEEECCCCcEEEE--EcC
Confidence 344444445667778877654211110000 00111111222 25566666653 35788999988754322 111
Q ss_pred CCcceeeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCCcc
Q 016416 176 PRCLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 176 ~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 249 (390)
.......+.+ +..+++.|+.++ .+.++|..+++-...-...........+.. ++++++.|+.++
T Consensus 168 h~~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg---- 237 (344)
T 4gqb_B 168 HAAQVTCVAASPHKDSVFLSCSEDN------RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG---- 237 (344)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTS------CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS----
T ss_pred cCCceEEEEecCCCCCceeeecccc------ccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC----
Confidence 1111112222 335677776543 478899988764332111111111222222 456777776542
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CC-EEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcce
Q 016416 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DN-QLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWG 327 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~ 327 (390)
.+..||+.+.+- +..+... ......++.. ++ ++++.|+.-+.|.+||..+++-..... +...-
T Consensus 238 --~v~~wd~~~~~~--~~~~~~h----~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~-------H~~~V 302 (344)
T 4gqb_B 238 --TVSLVDTKSTSC--VLSSAVH----SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA-------HRDFV 302 (344)
T ss_dssp --EEEEEESCC--C--CEEEECC----SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECC-------CSSCE
T ss_pred --cEEEEECCCCcE--EEEEcCC----CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcC-------CCCCE
Confidence 477789876542 1111110 1011122222 34 566667777889999998876333211 11111
Q ss_pred eEEEE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 328 LAFKA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 328 ~~~~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+++. .+..|++.||.++ .|.+|+..+
T Consensus 303 ~~v~~sp~~~~llas~s~D~------~v~~w~v~~ 331 (344)
T 4gqb_B 303 RDATWSPLNHSLLTTVGWDH------QVVHHVVPT 331 (344)
T ss_dssp EEEEECSSSTTEEEEEETTS------CEEEEECCC
T ss_pred EEEEEeCCCCeEEEEEcCCC------eEEEEECCC
Confidence 22222 2456777788764 377888766
No 66
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.83 E-value=0.32 Score=49.23 Aligned_cols=234 Identities=6% Similarity=0.049 Sum_probs=122.7
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCc---ccCCCCeeEEEe-CCE-EEEEcccccCCeEEEEECCCCcEeecCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDE---CFNHADKESLAV-GSE-LLVFGRELFDFAIWKYSLVFRSWMKCEG 172 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~---~~~~~~~~~~~~-~~~-iy~~Gg~~~~~~~~~yd~~t~~W~~~~~ 172 (390)
..|++......+..||+.+.++..+...+... .....-.+++.. ++. |++.. ...-+++||+.++++.....
T Consensus 368 g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt---~~~Gl~~~d~~~~~~~~~~~ 444 (795)
T 4a2l_A 368 KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT---HAGGLSILHRNSGQVENFNQ 444 (795)
T ss_dssp SCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE---TTTEEEEEETTTCCEEEECT
T ss_pred CCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe---CcCceeEEeCCCCcEEEeec
Confidence 44555444457888999988887654322100 001111122222 455 66632 12358899999998877643
Q ss_pred CCC---CCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC--C--CCcCceEEEE--CCEEEEEec
Q 016416 173 MNH---PRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH--S--PRRLCSGFFM--DGKFYVIGG 242 (390)
Q Consensus 173 ~~~---~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~--~--~r~~~~~~~~--~~~iyv~GG 242 (390)
... ...-.+.... ++.|++... ..+.+||+.+++|+...... . .......+.. +|.|++...
T Consensus 445 ~~~~l~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 445 RNSQLVNENVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp TTSCCSCSCEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred CCCCcCCCeeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence 111 1111122222 466666432 23789999999998875331 1 1111122222 567777532
Q ss_pred ccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccC---CCc
Q 016416 243 MSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGR---LPV 318 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~---~~~ 318 (390)
..+.+||+.++++ ..................++. .+|.|++... +.+.+||+.++++..... +|.
T Consensus 517 --------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~Gl~~~d~~~~~~~~~~~~~gl~~ 585 (795)
T 4a2l_A 517 --------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--EGFYCFNEKDKQIKRYNTTNGLPN 585 (795)
T ss_dssp --------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--SCEEEEETTTTEEEEECGGGTCSC
T ss_pred --------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--CCceeECCCCCcEEEeCCCCCCch
Confidence 2377899998888 443211100000101111222 3577887653 369999999998887642 222
Q ss_pred cccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016416 319 RADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 319 ~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.. -.+++.. +|+|++.+. . -+.+|++++ .+++...
T Consensus 586 ~~------i~~i~~d~~g~lWi~t~-~-------Gl~~~~~~~------~~~~~~~ 621 (795)
T 4a2l_A 586 NV------VYGILEDSFGRLWLSTN-R-------GISCFNPET------EKFRNFT 621 (795)
T ss_dssp SC------EEEEEECTTSCEEEEET-T-------EEEEEETTT------TEEEEEC
T ss_pred hh------eEEEEECCCCCEEEEcC-C-------ceEEEcCCC------CcEEEcC
Confidence 11 1233332 577887763 2 367888877 4666554
No 67
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.82 E-value=0.42 Score=46.65 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=68.5
Q ss_pred EEeCCEEEEEcccccCCeEEEEEC-CCCc--EeecCCCCC-----CCc---ceeeee--eCCE----EEEEeccCCCCCc
Q 016416 139 LAVGSELLVFGRELFDFAIWKYSL-VFRS--WMKCEGMNH-----PRC---LFGSGS--LGSI----AIIAGGSDKNGHV 201 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~-~t~~--W~~~~~~~~-----~r~---~~~~~~--~~~~----lyv~GG~~~~~~~ 201 (390)
+..++.||+.+.. ...++.+|. .+++ |+.-...+. ..+ ..+.++ .+++ ||+...
T Consensus 59 ~v~~g~vyv~~~~--~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------- 129 (599)
T 1w6s_A 59 LVVDGKMYIHTSF--PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------- 129 (599)
T ss_dssp EEETTEEEEECST--TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-------
T ss_pred EEECCEEEEEeCC--CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-------
Confidence 5668999987642 357899999 7774 876443221 111 123344 5666 877532
Q ss_pred cceEEEEECCCCc--EEEcCCCCCC--CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEc
Q 016416 202 LKSAELYDSTTGR--WEMLPSMHSP--RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKI 266 (390)
Q Consensus 202 ~~~~~~yd~~t~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 266 (390)
...+..+|..+++ |+.-..-+.. ....+-++.+++||+-.+.... .....++.||..|.+ |+.-
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEEEEc
Confidence 2458899999886 8753211111 1122334578998875432110 123568899998875 8754
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.81 E-value=0.18 Score=46.18 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=97.3
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..++..+....+..+|..+.+........... .-..+. .++.+++.|+. ...+.+||..+.+....-. .
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~-----~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~--~ 174 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDEST-----YVASVKWSHDGSFLSVGLG--NGLVDIYDVESQTKLRTMA--G 174 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTC-----CEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEEEEC--C
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCC-----CEEEEEECCCCCEEEEECC--CCeEEEEECcCCeEEEEec--C
Confidence 44556566778888999887665443322111 011222 25555566543 3578899988776433211 1
Q ss_pred CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceE
Q 016416 176 PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 176 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 253 (390)
..........++.+++.|+.+ ..+.+||..+..-.. ..+.........+.. ++.+++.|+.++ .+
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~------~v 241 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQI-GTLQGHSSEVCGLAWRSDGLQLASGGNDN------VV 241 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEE-EEEECCSSCEEEEEECTTSSEEEEEETTS------CE
T ss_pred CCCceEEEEECCCEEEEEcCC------CCEEEEecccCccee-eEEcCCCCCeeEEEEcCCCCEEEEEeCCC------eE
Confidence 222223333466667777654 358889987433111 011111112222222 667777776543 47
Q ss_pred EEEeCCCCceEE-ccCCCCCCCCcCCCCCEEEEE--CCEEEEEec--CCCeEEEEeCCCCceEE
Q 016416 254 EEFDLETRKWRK-IEGMYPNVNRAAQAPPLVAVV--DNQLYAVEY--LTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 254 ~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg--~~~~v~~yd~~~~~W~~ 312 (390)
..||..+.+-.. +.... .....++.. +..+++.|+ ..+.+..||..+.+-..
T Consensus 242 ~iwd~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHN-------AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp EEEETTCSSEEEEECCCS-------SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred EEccCCCCCccEEecCCc-------ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence 789998755332 11111 111233333 345777764 57889999998776433
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.80 E-value=0.00057 Score=61.79 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=38.8
Q ss_pred CCCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCc
Q 016416 43 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYL 86 (390)
Q Consensus 43 ~~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~ 86 (390)
+...|..||+|++.+|+.+|+..++.+++.|||+|+.+..++.+
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 45678999999999999999999999999999999999877654
No 70
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.80 E-value=0.11 Score=50.29 Aligned_cols=291 Identities=13% Similarity=0.021 Sum_probs=134.4
Q ss_pred CCChHHHHHHHhhhcccc----chhhhHhhcHHHHHHhhcCCchhhhhhcCccccEEEEEe-CCCeeEEEecCCCceeeC
Q 016416 48 PGLVDDVALNCLAFACTS----DYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVC-DPRGWEAFDPMKKKWMAL 122 (390)
Q Consensus 48 ~~LP~dl~~~iL~rlp~~----~l~~~~~V~k~w~~l~~s~~~~~~r~~~~~~~~~l~~~~-~~~~~~~~d~~~~~W~~l 122 (390)
..|.++=+..+.++|-.. .-..+..+.+.|..+..-..........-.....+|+.. ....+..+|..+.+-...
T Consensus 95 ~~ls~~ei~~l~~yl~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~ 174 (543)
T 1nir_A 95 GELSKEQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV 174 (543)
T ss_dssp TSSCHHHHHHHHHHTTSCCCBCCCCCHHHHHHHCEESSCGGGSCSSCCSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred cCCCHHHHHHHHHHHHhcccCCCccchhhhhhhhccccccccCCcccccccCCCCEEEEEEcCCCeEEEEECCCceEEEE
Confidence 467888777777765321 112233333444322211000000000111245666664 356788889887654321
Q ss_pred CCCCCCcccCCCCeeE-EEe-CCEEEEEcccccCCeEEEEEC--CCCcEeecCCCCCCCcceeeeee-----CC-EEEEE
Q 016416 123 PKIPCDECFNHADKES-LAV-GSELLVFGRELFDFAIWKYSL--VFRSWMKCEGMNHPRCLFGSGSL-----GS-IAIIA 192 (390)
Q Consensus 123 ~~~p~~~~~~~~~~~~-~~~-~~~iy~~Gg~~~~~~~~~yd~--~t~~W~~~~~~~~~r~~~~~~~~-----~~-~lyv~ 192 (390)
++..... +.+ +.. +..+|+.+.. ..+.+||. .+.+-. ..++.......++.- ++ .+|+.
T Consensus 175 --i~~g~~~----~~v~~spdg~~l~v~~~d---~~V~v~D~~~~t~~~~--~~i~~g~~p~~va~sp~~~~dg~~l~v~ 243 (543)
T 1nir_A 175 --IDTGYAV----HISRMSASGRYLLVIGRD---ARIDMIDLWAKEPTKV--AEIKIGIEARSVESSKFKGYEDRYTIAG 243 (543)
T ss_dssp --EECSTTE----EEEEECTTSCEEEEEETT---SEEEEEETTSSSCEEE--EEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred --EecCccc----ceEEECCCCCEEEEECCC---CeEEEEECcCCCCcEE--EEEecCCCcceEEeCCCcCCCCCEEEEE
Confidence 1111111 112 222 4566666543 78999999 665432 222222222222222 34 56655
Q ss_pred eccCCCCCccceEEEEECCCCcEEE-cC--CC--------CCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeC
Q 016416 193 GGSDKNGHVLKSAELYDSTTGRWEM-LP--SM--------HSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDL 258 (390)
Q Consensus 193 GG~~~~~~~~~~~~~yd~~t~~W~~-~~--~~--------~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~ 258 (390)
... ...+.++|..+.+-.. ++ .+ +.++ ...+.. ++.+|+.... ...+..+|.
T Consensus 244 ~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~--v~~i~~s~~~~~~~vs~~~------~g~i~vvd~ 309 (543)
T 1nir_A 244 AYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR--VAAIIASHEHPEFIVNVKE------TGKVLLVNY 309 (543)
T ss_dssp EEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC--EEEEEECSSSSEEEEEETT------TTEEEEEEC
T ss_pred Ecc------CCeEEEEeccccccceeecccCcccCccccccCCc--eEEEEECCCCCEEEEEECC------CCeEEEEEe
Confidence 322 3457889988776433 21 11 1111 122222 3455554321 346778888
Q ss_pred CCCceEEccCCCCCCCCcCCCCCEEE-EECCE-EEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CC
Q 016416 259 ETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQ-LYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GN 335 (390)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~-l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~ 335 (390)
.+.+-..+..++.. +....++ .-+|+ +|+.+...+.|.++|..+++-... ++.....+.+.+..++.- ++
T Consensus 310 ~~~~~l~~~~i~~~-----~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~--i~~g~~ph~g~g~~~~~p~~g 382 (543)
T 1nir_A 310 KDIDNLTVTSIGAA-----PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL--VDVGKTPHPGRGANFVHPKYG 382 (543)
T ss_dssp TTSSSCEEEEEECC-----SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE--EECSSSBCCTTCEEEEETTTE
T ss_pred cCCCcceeEEeccC-----cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe--eccCCCCCCCCCcccCCCCCc
Confidence 76542111111111 1111122 33555 555555678999999998864432 221111111223333222 37
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccC
Q 016416 336 ELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p 376 (390)
.+|+.+.... ..|.+||.+++..+ ...|+.+..++
T Consensus 383 ~~~~s~~~~d-----~~V~v~d~~~~~~~-~~~~~~v~~l~ 417 (543)
T 1nir_A 383 PVWSTSHLGD-----GSISLIGTDPKNHP-QYAWKKVAELQ 417 (543)
T ss_dssp EEEEEEBSSS-----SEEEEEECCTTTCT-TTBTSEEEEEE
T ss_pred cEEEeccCCC-----ceEEEEEeCCCCCc-hhcCeEEEEEE
Confidence 7888774321 15778888762111 12488777654
No 71
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.76 E-value=0.00046 Score=60.04 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=39.4
Q ss_pred CCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchhh
Q 016416 47 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGL 89 (390)
Q Consensus 47 ~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~~ 89 (390)
+..||+|++..||++|++++|.++..|||+|+.+..++.+.+.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~ 47 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRY 47 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 5679999999999999999999999999999999999887653
No 72
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.72 E-value=0.48 Score=45.97 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=70.0
Q ss_pred EEeCCEEEEEcccccCCeEEEEEC-CCCc--EeecCCCCCC--------CcceeeeeeCCEEEEEeccCCCCCccceEEE
Q 016416 139 LAVGSELLVFGRELFDFAIWKYSL-VFRS--WMKCEGMNHP--------RCLFGSGSLGSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~-~t~~--W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
+..++.||+.... ...++.+|. .+++ |+.-...... ....+.++.+++||+... ...+..
T Consensus 59 ~v~~g~vyv~~~~--~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~a 129 (571)
T 2ad6_A 59 LVIGDMMYVHSAF--PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHLLA 129 (571)
T ss_dssp EEETTEEEEECST--TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEE
T ss_pred EEECCEEEEEeCC--CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEEEE
Confidence 5678999987642 357899999 7764 8764332210 011234566889988632 245899
Q ss_pred EECCCCc--EEEc-CCCCCC-CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEc
Q 016416 208 YDSTTGR--WEML-PSMHSP-RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKI 266 (390)
Q Consensus 208 yd~~t~~--W~~~-~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~ 266 (390)
+|..+++ |+.- ...+.. ....+-++.++.||+..+.... .....++.||..+.+ |+.-
T Consensus 130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEc
Confidence 9999885 8753 221111 1122334578999886432110 113568899998764 8643
No 73
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.70 E-value=0.14 Score=47.58 Aligned_cols=178 Identities=10% Similarity=-0.051 Sum_probs=95.2
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeee-eCC-EEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE
Q 016416 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGS-IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 231 (390)
...++++|..+++...+...+.. ....+. -++ .|++.+..++ ...++++|..++..+.+..-.. .....
T Consensus 202 ~~~i~~~d~~tg~~~~l~~~~~~--~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~~---~~~~~ 272 (415)
T 2hqs_A 202 RSALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRS---NNTEP 272 (415)
T ss_dssp SCEEEEEETTTCCEEEEECCSSC--EEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCSS---CEEEE
T ss_pred CcEEEEEECCCCcEEEeecCCCc--ccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCCC---cccce
Confidence 35899999999887665443221 112221 144 4555554332 3569999999988776643221 12222
Q ss_pred EE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEE-EEECCEEEEEecC---CCeEEEEeC
Q 016416 232 FM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLV-AVVDNQLYAVEYL---TNMVKKYDK 305 (390)
Q Consensus 232 ~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~g~l~v~gg~---~~~v~~yd~ 305 (390)
.. +|+..++++... ....++.+|+.+.+-..+..... ....+ ..-+|+.++++.. ...++.||.
T Consensus 273 ~~spdg~~l~~~s~~~---g~~~i~~~d~~~~~~~~l~~~~~-------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 273 TWFPDSQNLAFTSDQA---GRPQVYKVNINGGAPQRITWEGS-------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp EECTTSSEEEEEECTT---SSCEEEEEETTSSCCEECCCSSS-------EEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred EECCCCCEEEEEECCC---CCcEEEEEECCCCCEEEEecCCC-------cccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 22 565444443221 13468889998877555432211 00011 1235554444332 358999999
Q ss_pred CCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 306 LKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 306 ~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+++...+..-. . .... ...-+++.+++++.++ ....+++||.+.
T Consensus 343 ~~~~~~~l~~~~---~---~~~~-~~spdg~~l~~~s~~~---~~~~l~~~d~~g 387 (415)
T 2hqs_A 343 ATGGVQVLSSTF---L---DETP-SLAPNGTMVIYSSSQG---MGSVLNLVSTDG 387 (415)
T ss_dssp TTCCEEECCCSS---S---CEEE-EECTTSSEEEEEEEET---TEEEEEEEETTS
T ss_pred CCCCEEEecCCC---C---cCCe-EEcCCCCEEEEEEcCC---CccEEEEEECCC
Confidence 998887664322 1 1111 2223566666665432 234688999876
No 74
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.70 E-value=0.25 Score=45.30 Aligned_cols=217 Identities=10% Similarity=0.068 Sum_probs=108.2
Q ss_pred CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcE--eecCCCCCCCcceee
Q 016416 105 DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSW--MKCEGMNHPRCLFGS 182 (390)
Q Consensus 105 ~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W--~~~~~~~~~r~~~~~ 182 (390)
....+..+|..+.+.... +.. +......+..++.+++.|+. ...+.+||..+..- ..+..... .-.++
T Consensus 154 ~dg~i~iwd~~~~~~~~~--~~~----~~~~v~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~ 223 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLRT--MAG----HQARVGCLSWNRHVLSSGSR--SGAIHHHDVRIANHQIGTLQGHSS--EVCGL 223 (401)
T ss_dssp TTSCEEEEETTTCCEEEE--ECC----CSSCEEEEEEETTEEEEEET--TSEEEEEETTSSSCEEEEEECCSS--CEEEE
T ss_pred CCCeEEEEECcCCeEEEE--ecC----CCCceEEEEECCCEEEEEcC--CCCEEEEecccCcceeeEEcCCCC--CeeEE
Confidence 355677777766543221 111 11112233445555555543 45788899874321 11111111 11122
Q ss_pred eee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCc-eEEEE--CCEEEEEecccCCCccCceEEEEeC
Q 016416 183 GSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLC-SGFFM--DGKFYVIGGMSSPTVSLTCGEEFDL 258 (390)
Q Consensus 183 ~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 258 (390)
... ++..++.|+.++ .+.+||..+..-... +....... +.+.. +..+++.||... -..+..||.
T Consensus 224 ~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~ 291 (401)
T 4aez_A 224 AWRSDGLQLASGGNDN------VVQIWDARSSIPKFT--KTNHNAAVKAVAWCPWQSNLLATGGGTM----DKQIHFWNA 291 (401)
T ss_dssp EECTTSSEEEEEETTS------CEEEEETTCSSEEEE--ECCCSSCCCEEEECTTSTTEEEEECCTT----TCEEEEEET
T ss_pred EEcCCCCEEEEEeCCC------eEEEccCCCCCccEE--ecCCcceEEEEEECCCCCCEEEEecCCC----CCEEEEEEC
Confidence 221 566777776543 488999987653321 11111112 22232 346676664211 235788999
Q ss_pred CCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEE--ecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE-EeC
Q 016416 259 ETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAV--EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK-ACG 334 (390)
Q Consensus 259 ~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~--gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~-~~~ 334 (390)
.+.+-...-..... ...++. -+++.++. |...+.+.+||..+.....+..++..... -..+. .-+
T Consensus 292 ~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~----v~~~~~s~d 360 (401)
T 4aez_A 292 ATGARVNTVDAGSQ-------VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR----VLYSALSPD 360 (401)
T ss_dssp TTCCEEEEEECSSC-------EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC----CCEEEECTT
T ss_pred CCCCEEEEEeCCCc-------EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC----EEEEEECCC
Confidence 87764332211110 001222 24544444 44678999999988877765544322211 11222 236
Q ss_pred CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 335 NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 335 ~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++++.|+.++ .|.+|+..+
T Consensus 361 g~~l~s~~~dg------~i~iw~~~~ 380 (401)
T 4aez_A 361 GRILSTAASDE------NLKFWRVYD 380 (401)
T ss_dssp SSEEEEECTTS------EEEEEECCC
T ss_pred CCEEEEEeCCC------cEEEEECCC
Confidence 77777777654 588999877
No 75
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.25 Score=43.91 Aligned_cols=184 Identities=17% Similarity=0.185 Sum_probs=94.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEee-cCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMK-CEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+++.|+ .+..+.+||..+++-.. +..-+.... .....-+++.++.|+.+ ..+.+||..++.-...
T Consensus 91 ~~~~l~s~s--~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~d------g~v~i~~~~~~~~~~~-- 159 (321)
T 3ow8_A 91 TLPIAASSS--LDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHV------GKVNIFGVESGKKEYS-- 159 (321)
T ss_dssp SSSEEEEEE--TTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTT------SEEEEEETTTCSEEEE--
T ss_pred CCCEEEEEe--CCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCC------CcEEEEEcCCCceeEE--
Confidence 344555554 34578889988775422 211111111 11112256666666643 3478888887653321
Q ss_pred CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCC
Q 016416 221 MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLT 297 (390)
Q Consensus 221 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~ 297 (390)
+.........+.. +++..+.|+.++ .+..||+.+.+-... +... ......++. -++++++.|+.-
T Consensus 160 ~~~~~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~--~~~h----~~~v~~l~~spd~~~l~s~s~d 227 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHT--LEGH----AMPIRSLTFSPDSQLLVTASDD 227 (321)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEE--ECCC----SSCCCEEEECTTSCEEEEECTT
T ss_pred ecCCCceEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEE--Eccc----CCceeEEEEcCCCCEEEEEcCC
Confidence 1111111122222 667777766543 477899988754321 1110 001112332 367778888888
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.|.+||..+..-... +.... ..-.++... ++..++.|+.++ .|.+||..+
T Consensus 228 g~i~iwd~~~~~~~~~--~~~h~----~~v~~~~~sp~~~~l~s~s~D~------~v~iwd~~~ 279 (321)
T 3ow8_A 228 GYIKIYDVQHANLAGT--LSGHA----SWVLNVAFCPDDTHFVSSSSDK------SVKVWDVGT 279 (321)
T ss_dssp SCEEEEETTTCCEEEE--ECCCS----SCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CeEEEEECCCcceeEE--EcCCC----CceEEEEECCCCCEEEEEeCCC------cEEEEeCCC
Confidence 8899999987654332 11111 111222222 566777777654 477888866
No 76
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=0.31 Score=49.21 Aligned_cols=231 Identities=10% Similarity=-0.005 Sum_probs=122.6
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCcEeecCCCC-C
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN-H 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~-~ 175 (390)
..|++......+..||+.+.++..+.. +... ....-.++... ++.|++.. ...-+++||+.+++++...... .
T Consensus 374 g~lWigt~~~Gl~~~~~~~~~~~~~~~-~~~~-~~~~v~~i~~d~~g~lWigt---~~~Gl~~~~~~~~~~~~~~~~~~~ 448 (781)
T 3v9f_A 374 GKLWIGTDGGGINVFENGKRVAIYNKE-NREL-LSNSVLCSLKDSEGNLWFGT---YLGNISYYNTRLKKFQIIELEKNE 448 (781)
T ss_dssp SCEEEEEBSSCEEEEETTEEEEECC------C-CCSBEEEEEECTTSCEEEEE---TTEEEEEECSSSCEEEECCSTTTC
T ss_pred CCEEEEeCCCcEEEEECCCCeEEEccC-CCCC-CCcceEEEEECCCCCEEEEe---ccCCEEEEcCCCCcEEEeccCCCC
Confidence 456655435668889988776655421 1110 00110112222 56677632 1236889999999988765321 1
Q ss_pred CCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCC---CCcCceEEEE--CCEEEEEecccCCCcc
Q 016416 176 PRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHS---PRRLCSGFFM--DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 176 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~---~r~~~~~~~~--~~~iyv~GG~~~~~~~ 249 (390)
...-.+...- ++.|++... .-+.+||+.+++|+....... .......+.. +|.|++.. ..
T Consensus 449 ~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~----- 514 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FG----- 514 (781)
T ss_dssp CCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SS-----
T ss_pred CCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cC-----
Confidence 1111222222 467776421 348899999998876543221 1111122222 56776642 21
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeE-EEEeCCCCceEEccC---CCccccCCC
Q 016416 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMV-KKYDKLKNTWDVLGR---LPVRADLSN 324 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v-~~yd~~~~~W~~v~~---~~~~~~~~~ 324 (390)
..+.+||+.++++.......... ......++. .+|.|++... ..+ .+||+.++++..... ++....
T Consensus 515 -~Gl~~~~~~~~~~~~~~~~~~l~---~~~i~~i~~d~~g~lWi~T~--~Glv~~~d~~~~~~~~~~~~~gl~~~~i--- 585 (781)
T 3v9f_A 515 -GGVGIYTPDMQLVRKFNQYEGFC---SNTINQIYRSSKGQMWLATG--EGLVCFPSARNFDYQVFQRKEGLPNTHI--- 585 (781)
T ss_dssp -SCEEEECTTCCEEEEECTTTTCS---CSCEEEEEECTTSCEEEEET--TEEEEESCTTTCCCEEECGGGTCSCCCC---
T ss_pred -CCEEEEeCCCCeEEEccCCCCCC---CCeeEEEEECCCCCEEEEEC--CCceEEECCCCCcEEEccccCCCCCceE---
Confidence 23778999999988765311100 000011222 3577877654 456 999999998877642 332211
Q ss_pred cceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016416 325 GWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 325 ~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.+++. -+|+|++.+. . -+.+|+|++ .++....
T Consensus 586 ---~~i~~d~~g~lW~~t~-~-------Gl~~~~~~~------~~~~~~~ 618 (781)
T 3v9f_A 586 ---RAISEDKNGNIWASTN-T-------GISCYITSK------KCFYTYD 618 (781)
T ss_dssp ---CEEEECSSSCEEEECS-S-------CEEEEETTT------TEEEEEC
T ss_pred ---EEEEECCCCCEEEEcC-C-------ceEEEECCC------CceEEec
Confidence 23333 3677887763 2 167888877 4565553
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.11 Score=52.52 Aligned_cols=226 Identities=12% Similarity=0.098 Sum_probs=110.7
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016416 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
..++...+....+..||..+.+.... +..+.. ......+..++..++.|+. ...+.+||..+++....-....
T Consensus 25 ~~~la~~~~~g~v~iwd~~~~~~~~~--~~~~~~--~v~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~- 97 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYETQVEVRS--IQVTET--PVRAGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHP- 97 (814)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEE--EECCSS--CEEEEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEEEECCS-
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEE--EecCCC--cEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCcEEEEEecCC-
Confidence 34555555566788889877654321 111100 0001122335555556653 4678999998876533211111
Q ss_pred Ccceeeee-eCCEEEEEeccCCCCCccceEEEEECCCC-cEEEcCCCCCCCcCce-EEEE--CCEEEEEecccCCCccCc
Q 016416 177 RCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEMLPSMHSPRRLCS-GFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 177 r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
..-..++. -++..++.|+.+ ..+.+||..++ ..... +........ ++.. ++.+++.|+.+ .
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~d------g 163 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLD------R 163 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEE--EECCSSCEEEEEEETTEEEEEEEEETT------S
T ss_pred CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEE--EcCCCCcEEEEEEEcCCCCEEEEEeCC------C
Confidence 11112222 245455555543 34788888766 32221 111111122 2233 45677776654 3
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE---CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCccee
Q 016416 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV---DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGL 328 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~ 328 (390)
.+..||+.+..-........ ......++.. ++.+++.|+..+.+..||..+.+-.. .+..... .-.
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~----~v~ 232 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQ-----ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA--TLEGHMS----NVS 232 (814)
T ss_dssp EEEEEETTCSSCSEEEECCC-----TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE--EEECCSS----CEE
T ss_pred eEEEEECCCCcceeEEecCC-----CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE--EEcCCCC----CEE
Confidence 57788886644211110000 0111123332 67788888888899999988765322 1111110 111
Q ss_pred EEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 329 AFK-ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 329 ~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++ .-++.+++.|+.++ .|.+||..+
T Consensus 233 ~~~~~~~~~~l~~~~~dg------~v~vwd~~~ 259 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDG------TLKIWNSST 259 (814)
T ss_dssp EEEECSSSSEEEEEETTS------CEEEEETTT
T ss_pred EEEEcCCCCEEEEEeCCC------eEEEEECCC
Confidence 222 22566777777653 377888866
No 78
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.56 E-value=0.08 Score=46.92 Aligned_cols=247 Identities=10% Similarity=0.082 Sum_probs=110.4
Q ss_pred cEEEEE-eCCCeeEEEecC-CCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECC--CCcEeecCC
Q 016416 98 HWVYLV-CDPRGWEAFDPM-KKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLV--FRSWMKCEG 172 (390)
Q Consensus 98 ~~l~~~-~~~~~~~~~d~~-~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~--t~~W~~~~~ 172 (390)
..+|+. .....+..||.. +.+...+..++...... ...+..+ +.+|+.+.. ...+.+|+.. ++++..+..
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~spdg~~l~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ---PMVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC---CEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCc---eEEECCCCCEEEEeecC--CCeEEEEEecCCCCceeeccc
Confidence 455665 335667777764 33343332222111110 1122233 446665542 2567777765 677765543
Q ss_pred CCCCCcceeeee-e-CCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCC
Q 016416 173 MNHPRCLFGSGS-L-GSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPT 247 (390)
Q Consensus 173 ~~~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~ 247 (390)
++.......++. - +..+|+.+.. ...+.+||...+. .+.+............+.. ++ .||+.+..+
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--- 150 (343)
T 1ri6_A 80 SALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ--- 150 (343)
T ss_dssp EECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG---
T ss_pred cccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCC---
Confidence 322221122222 2 3456666532 2347778773222 2222111211112222222 44 576654222
Q ss_pred ccCceEEEEeCCC-CceEEcc--CCCCCCCCcCCCCCEEEE-ECC-EEEEEecCCCeEEEEeCC--CCceEE---ccCCC
Q 016416 248 VSLTCGEEFDLET-RKWRKIE--GMYPNVNRAAQAPPLVAV-VDN-QLYAVEYLTNMVKKYDKL--KNTWDV---LGRLP 317 (390)
Q Consensus 248 ~~~~~v~~yd~~~-~~W~~~~--~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg~~~~v~~yd~~--~~~W~~---v~~~~ 317 (390)
..+..||+.+ .+...+. .......... ..++. -+| .+|+.+...+.+.+||.. +.++.. +..++
T Consensus 151 ---~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 151 ---DRICLFTVSDDGHLVAQDPAEVTTVEGAGP---RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp ---TEEEEEEECTTSCEEEEEEEEEECSTTCCE---EEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred ---CEEEEEEecCCCceeeecccccccCCCCCc---ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC
Confidence 3578899887 6665432 1111100001 01222 234 477777677889999984 455543 23233
Q ss_pred ccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016416 318 VRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
...... .....++.. +..||+.+..++ .|.+||++. ...+++.+...
T Consensus 225 ~~~~~~-~~~~~i~~s~dg~~l~v~~~~~~------~i~v~d~~~----~~~~~~~~~~~ 273 (343)
T 1ri6_A 225 ENFSDT-RWAADIHITPDGRHLYACDRTAS------LITVFSVSE----DGSVLSKEGFQ 273 (343)
T ss_dssp TTCCSC-CCEEEEEECTTSSEEEEEETTTT------EEEEEEECT----TSCCEEEEEEE
T ss_pred cccccc-CCccceEECCCCCEEEEEecCCC------EEEEEEEcC----CCCceEEeeee
Confidence 221100 011122222 346776664332 577888763 11345555443
No 79
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.034 Score=56.09 Aligned_cols=190 Identities=10% Similarity=0.078 Sum_probs=101.9
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016416 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
+..++.|+. +..+.+||....++..+..+.........+.+ + +..++.|+.++ .+.+||..++.|..+
T Consensus 21 g~~latg~~--dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~~~~~~~~ 92 (753)
T 3jro_A 21 GKRLATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQI 92 (753)
T ss_dssp SCCEEEEET--TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEETTEEEEE
T ss_pred CCeEEEEEC--CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECCCCccccc
Confidence 444455542 35678888876666655444333322222222 2 66777777543 388899989887665
Q ss_pred CCCCCCCcCceEEEE--C--CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--------
Q 016416 219 PSMHSPRRLCSGFFM--D--GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-------- 286 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-------- 286 (390)
..+.........+.. + +.+++.|+.++ .+..||..+..-.....+... ......+...
T Consensus 93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~~----~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAH----AIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEECC----SSCEEEEEECCCC-----
T ss_pred ccccCCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeecC----CCceEEEEecCccccccc
Confidence 544433333333333 3 66777776543 477788876521111000000 0000011111
Q ss_pred ------CCEEEEEecCCCeEEEEeCCCC--ceEEccCCCccccCCCcceeEEEEe-C---CEEEEEcCCCCCCCCeEEEe
Q 016416 287 ------DNQLYAVEYLTNMVKKYDKLKN--TWDVLGRLPVRADLSNGWGLAFKAC-G---NELLVVGGQRGPEGENVVLN 354 (390)
Q Consensus 287 ------~g~l~v~gg~~~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~~~~~-~---~~lyv~GG~~~~~~~~~~i~ 354 (390)
++.+++.|+..+.|..||..++ .+..+..+..... .-.+++.. + +.+++.||.++ .|.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~----~V~~l~~sp~~~~~~~l~s~s~Dg------~I~ 232 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYLASVSQDR------TCI 232 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEESSS------CEE
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC----cEEEEEeccCCCCCCEEEEEecCC------EEE
Confidence 3677888887888999998665 3444433322111 11222222 3 68888888664 377
Q ss_pred eecCCC
Q 016416 355 SWCPKS 360 (390)
Q Consensus 355 ~y~~~~ 360 (390)
+||..+
T Consensus 233 iwd~~~ 238 (753)
T 3jro_A 233 IWTQDN 238 (753)
T ss_dssp EEEESS
T ss_pred EecCCC
Confidence 888876
No 80
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.54 E-value=0.061 Score=47.66 Aligned_cols=232 Identities=9% Similarity=0.025 Sum_probs=112.0
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCC-EEEEEcccccCCeEEEEECCCCcE--eecCC
Q 016416 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGS-ELLVFGRELFDFAIWKYSLVFRSW--MKCEG 172 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~iy~~Gg~~~~~~~~~yd~~t~~W--~~~~~ 172 (390)
...+|+.. ....+..+|+.+.+....-..+.... ...+..++ .+|+.+.. ...++++|+.+++. ..+..
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-----~~~~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-----DTAITSDCSNVVVTSDF--CQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-----EEEECSSSCEEEEEEST--TCEEEEEECSSSSCEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-----eEEEcCCCCEEEEEeCC--CCeEEEEECCCCceeEEeccc
Confidence 45566654 35678889998887654332222110 11222234 57776542 34899999988764 22222
Q ss_pred CCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCCccC
Q 016416 173 MNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTVSL 250 (390)
Q Consensus 173 ~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~ 250 (390)
...+........-+..+| .+...+ ....+.+||..+++-...- +........+.. +| .+|+.+....
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~----- 150 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGLILIDRSSA----- 150 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCEEEEEETTT-----
T ss_pred CCCCccceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEE--ECCCCccceEECCCCCEEEEEecCCC-----
Confidence 222221112212244566 332211 1237999999988764432 222122333332 55 4777654321
Q ss_pred ceEEEEeCCCCc-eEEc--cCCCCCCCCcCCCCCEEEE-ECC-EEEEEecCCCeEEEEeCCCCce-EEccCCCccccCCC
Q 016416 251 TCGEEFDLETRK-WRKI--EGMYPNVNRAAQAPPLVAV-VDN-QLYAVEYLTNMVKKYDKLKNTW-DVLGRLPVRADLSN 324 (390)
Q Consensus 251 ~~v~~yd~~~~~-W~~~--~~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg~~~~v~~yd~~~~~W-~~v~~~~~~~~~~~ 324 (390)
..+..||...+. .... ..++... ....++. -+| .+|+.+...+.+.+||+.+.+. ..+..++.....
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~-- 223 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISGGT-----RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLP-- 223 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECSSS-----SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCC--
T ss_pred ceEEEEEECCCCcEeecCCccccCCC-----CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCC--
Confidence 115556654322 1111 0011110 0111222 245 4888877778999999988775 112222222111
Q ss_pred cceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 325 GWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 325 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.++..-+..||+.... ...|.+||+++
T Consensus 224 -~~~~~spdg~~l~v~~~~------~~~i~~~d~~~ 252 (331)
T 3u4y_A 224 -GTIVVSRDGSTVYVLTES------TVDVFNFNQLS 252 (331)
T ss_dssp -CCEEECTTSSEEEEECSS------EEEEEEEETTT
T ss_pred -ceEEECCCCCEEEEEEcC------CCEEEEEECCC
Confidence 112221123447776542 23588899987
No 81
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.52 E-value=0.31 Score=43.27 Aligned_cols=215 Identities=13% Similarity=0.065 Sum_probs=105.4
Q ss_pred eCCCeeEEEecCCCceee-CCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceee
Q 016416 104 CDPRGWEAFDPMKKKWMA-LPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGS 182 (390)
Q Consensus 104 ~~~~~~~~~d~~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 182 (390)
+....+..+|..+.+-.. +..-+.. .....+..++..++.|+. ...+.+||..+.+-...-.... ....++
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~g~~--dg~v~i~~~~~~~~~~~~~~~~-~~v~~~ 170 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDAGPVD-----AWTLAFSPDSQYLATGTH--VGKVNIFGVESGKKEYSLDTRG-KFILSI 170 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTC-----CCCEEECTTSSEEEEECT--TSEEEEEETTTCSEEEEEECSS-SCEEEE
T ss_pred eCCCcEEEEECCCCCEEEEEeCCCcc-----EEEEEECCCCCEEEEEcC--CCcEEEEEcCCCceeEEecCCC-ceEEEE
Confidence 345667778887664322 1111110 001123335555566543 4578888887765322111111 111112
Q ss_pred e-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCC
Q 016416 183 G-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLE 259 (390)
Q Consensus 183 ~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~ 259 (390)
+ .-+++.++.|+.++ .+.+||..+++-... +.........+.. ++++++.|+.++ .+..||..
T Consensus 171 ~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~dg------~i~iwd~~ 236 (321)
T 3ow8_A 171 AYSPDGKYLASGAIDG------IINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDDG------YIKIYDVQ 236 (321)
T ss_dssp EECTTSSEEEEEETTS------CEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTTS------CEEEEETT
T ss_pred EECCCCCEEEEEcCCC------eEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCCC------eEEEEECC
Confidence 2 12566777776543 488999988764321 1111111122222 667777766543 47779988
Q ss_pred CCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEE
Q 016416 260 TRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNEL 337 (390)
Q Consensus 260 ~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~l 337 (390)
+...... +... ......++. -+++.++.++.-+.|.+||..+.+-.. .+..... .-.++.. -++..
T Consensus 237 ~~~~~~~--~~~h----~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~h~~----~v~~v~~s~~g~~ 304 (321)
T 3ow8_A 237 HANLAGT--LSGH----ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH--TFFDHQD----QVWGVKYNGNGSK 304 (321)
T ss_dssp TCCEEEE--ECCC----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSS----CEEEEEECTTSSE
T ss_pred CcceeEE--EcCC----CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE--EEcCCCC----cEEEEEECCCCCE
Confidence 7654322 1110 000111222 256777777777899999988765332 2211111 1112222 25566
Q ss_pred EEEcCCCCCCCCeEEEeeecC
Q 016416 338 LVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 338 yv~GG~~~~~~~~~~i~~y~~ 358 (390)
++.||.++ .|.+||.
T Consensus 305 l~s~~~d~------~i~vwd~ 319 (321)
T 3ow8_A 305 IVSVGDDQ------EIHIYDC 319 (321)
T ss_dssp EEEEETTC------CEEEEEC
T ss_pred EEEEeCCC------eEEEEeC
Confidence 67777654 3667763
No 82
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.52 E-value=0.15 Score=44.86 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=91.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++..++.|+. ...+.+||..+.+....-... ...-..++. -+++.++.|+.+ ..+.+||..++.-...
T Consensus 34 ~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~-- 102 (312)
T 4ery_A 34 NGEWLASSSA--DKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSNLLVSASDD------KTLKIWDVSSGKCLKT-- 102 (312)
T ss_dssp TSSEEEEEET--TSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEE--
T ss_pred CCCEEEEeeC--CCeEEEEeCCCcccchhhccC-CCceEEEEEcCCCCEEEEECCC------CEEEEEECCCCcEEEE--
Confidence 3445555542 346788888877664432111 111112222 255666777654 3588899887764321
Q ss_pred CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCC
Q 016416 221 MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLT 297 (390)
Q Consensus 221 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~ 297 (390)
+.........+.. ++.+++.|+.++ .+..||+.+.+-... +..... ....++. .++.+++.++..
T Consensus 103 ~~~~~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~--~~~~~~----~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 103 LKGHSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKT--LPAHSD----PVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEE--ECCCSS----CEEEEEECTTSSEEEEEETT
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEE--ecCCCC----cEEEEEEcCCCCEEEEEeCC
Confidence 1111111122222 556666666543 477899987654321 111000 0001222 256777888888
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+..||..+.+-...-....... .......-+++.++.|+.++ .|.+||..+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~d~------~i~iwd~~~ 223 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGKYILAATLDN------TLKLWDYSK 223 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCC----EEEEEECTTSSEEEEEETTT------EEEEEETTT
T ss_pred CcEEEEECCCCceeeEEeccCCCc----eEEEEECCCCCEEEEEcCCC------eEEEEECCC
Confidence 899999998876433211111000 00111122556666666543 467777765
No 83
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.49 E-value=0.43 Score=42.57 Aligned_cols=225 Identities=12% Similarity=0.104 Sum_probs=108.4
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcE--eecCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSW--MKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W--~~~~~~~~ 175 (390)
..|...+....+..+|..+.+-... ++..... .....+..++.+++.|+. ...+.+||..+..- .....+..
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~~~~~~--~~~~~~~--v~~~~~s~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~~~~~ 141 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTTNKVHA--IPLRSSW--VMTCAYAPSGNYVACGGL--DNICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEE--EECSSSC--EEEEEECTTSSEEEEEET--TCEEEEEETTTCSBSCEEEEEEEC
T ss_pred CEEEEEeCCCcEEEEECCCCCcceE--eecCCcc--EEEEEECCCCCEEEEEeC--CCeEEEEECccCCCcceeEEEecC
Confidence 3444444566777888766543211 1111100 001112224555566653 45788888876431 11111111
Q ss_pred CCcce-eee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCc
Q 016416 176 PRCLF-GSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 176 ~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
..... .+. .-++. ++.|+.+ ..+.+||..++.-... +.........+.. ++++++.|+.++
T Consensus 142 h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d~------ 206 (340)
T 1got_B 142 HTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACDA------ 206 (340)
T ss_dssp CSSCEEEEEEEETTE-EEEEETT------SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CCccEEEEEECCCCc-EEEEECC------CcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCCC------
Confidence 11111 111 22455 4445433 3488899988765332 1111111222222 567777776543
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEE
Q 016416 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAF 330 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~ 330 (390)
.+..||+.+..-...- ... ......++. -++.+++.|+.-+.+..||..+++-...-..+... .+...
T Consensus 207 ~v~~wd~~~~~~~~~~--~~h----~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~-----~~v~~ 275 (340)
T 1got_B 207 SAKLWDVREGMCRQTF--TGH----ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-----CGITS 275 (340)
T ss_dssp CEEEEETTTCSEEEEE--CCC----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC-----SCEEE
T ss_pred cEEEEECCCCeeEEEE--cCC----cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc-----cceEE
Confidence 4677898876533211 110 000011222 25777788888889999999876532211111110 01112
Q ss_pred EE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 331 KA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 331 ~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+. -++++++.|+.++ .|.+||..+
T Consensus 276 ~~~s~~g~~l~~g~~d~------~i~vwd~~~ 301 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDF------NCNVWDALK 301 (340)
T ss_dssp EEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred EEECCCCCEEEEECCCC------eEEEEEccc
Confidence 22 2677788887653 588899865
No 84
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.46 E-value=0.062 Score=47.21 Aligned_cols=233 Identities=9% Similarity=-0.007 Sum_probs=114.2
Q ss_pred ccEEEEE--------eCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eC-CEEEEEcccccCCeEEEEECCCC
Q 016416 97 EHWVYLV--------CDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VG-SELLVFGRELFDFAIWKYSLVFR 165 (390)
Q Consensus 97 ~~~l~~~--------~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~-~~iy~~Gg~~~~~~~~~yd~~t~ 165 (390)
+..+|+. .....+..||+.+.++..+.. +..... ......++ .+ +.+|+... ...+++||+. +
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~-~~~~~~i~~~~~~g~l~v~~~---~~~l~~~d~~-g 101 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGY-GGIPAGCQCDRDANQLFVADM---RLGLLVVQTD-G 101 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTE-ECCEEEEEECSSSSEEEEEET---TTEEEEEETT-S
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCC-CCCCceEEEecCCCcEEEEEC---CCCEEEEeCC-C
Confidence 3456665 235678889988887765432 100000 00111222 24 67888653 2378999998 7
Q ss_pred cEeec-CCCCCC---Ccceeeee-eCCEEEEEeccCC---------CCCccceEEEEECCCCcEEEcCC-CCCCCcCceE
Q 016416 166 SWMKC-EGMNHP---RCLFGSGS-LGSIAIIAGGSDK---------NGHVLKSAELYDSTTGRWEMLPS-MHSPRRLCSG 230 (390)
Q Consensus 166 ~W~~~-~~~~~~---r~~~~~~~-~~~~lyv~GG~~~---------~~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~ 230 (390)
+...+ ...... .....++. -++.+|+...... .......+++||+. ++...+.. ... ....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~---~~~i 177 (314)
T 1pjx_A 102 TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF---PNGI 177 (314)
T ss_dssp CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS---EEEE
T ss_pred CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC---cceE
Confidence 76655 322111 11122222 2578887754220 01113568889887 65544311 111 1223
Q ss_pred EEE-----CC-EEEEEecccCCCccCceEEEEeCC-CCceEEc---cCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCe
Q 016416 231 FFM-----DG-KFYVIGGMSSPTVSLTCGEEFDLE-TRKWRKI---EGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNM 299 (390)
Q Consensus 231 ~~~-----~~-~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~---~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~ 299 (390)
+.. ++ .+|+.... ...+.+||+. +++.... ..++.... .....++. -+|.+|+.....+.
T Consensus 178 ~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 178 AVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHE---GGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSS---CEEEEEEEBTTCCEEEEEETTTE
T ss_pred EEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCC---CCCCceEECCCCCEEEEEcCCCE
Confidence 333 34 56776432 2457788875 4443211 11221100 00012222 35789988766678
Q ss_pred EEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCE-EEEEcCCCCCCCCeEEEeeecCCC
Q 016416 300 VKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNE-LLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 300 v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~-lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
|.+||+++++-...-..+... -.+++. -+++ ||+..... ..|++|+++.
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~------~~~i~~~~dg~~l~v~~~~~------~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEK------PSNLHFKPQTKTIFVTEHEN------NAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSC------EEEEEECTTSSEEEEEETTT------TEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCC------ceeEEECCCCCEEEEEeCCC------CeEEEEeCCC
Confidence 999999855432211222111 122222 2444 88876543 1588888876
No 85
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.46 E-value=0.81 Score=45.41 Aligned_cols=213 Identities=16% Similarity=0.172 Sum_probs=115.2
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCc----ccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--E
Q 016416 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDE----CFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--W 167 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~----~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W 167 (390)
.+..+|+......++++|..+. .|..-...+... +...........++.||+... ...++.+|..|++ |
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---DGRLIALDAATGKEVW 152 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---TSEEEEEETTTCCEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---CCEEEEEECCCCCEEe
Confidence 4677888766677899999866 487644332211 000111223456888888643 3578999998875 7
Q ss_pred eecCC-CCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCC---CC--------------
Q 016416 168 MKCEG-MNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHS---PR-------------- 225 (390)
Q Consensus 168 ~~~~~-~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~---~r-------------- 225 (390)
+.-.. -.. .......++.++.+|+..+.... .....+..||..+++ |+.-..-+. +.
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred eecCCcCcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 65322 111 11112334568888876432211 124579999999886 876321111 00
Q ss_pred --------c---CceEEEE---CCEEEEEeccc------------CCCccCceEEEEeCCCCc--eEEccCCCCCCCCcC
Q 016416 226 --------R---LCSGFFM---DGKFYVIGGMS------------SPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAA 277 (390)
Q Consensus 226 --------~---~~~~~~~---~~~iyv~GG~~------------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~ 277 (390)
. ......+ ++.||+-.+.. +...+...+..+|+.|++ |+.-...........
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 0 0011223 67888765432 222344579999999875 764321111000000
Q ss_pred CCCCEEEE--ECC---EEEEEecCCCeEEEEeCCCCc--eEE
Q 016416 278 QAPPLVAV--VDN---QLYAVEYLTNMVKKYDKLKNT--WDV 312 (390)
Q Consensus 278 ~~~~~~~~--~~g---~l~v~gg~~~~v~~yd~~~~~--W~~ 312 (390)
...+.++. .+| .+++++...+.++++|.++++ |..
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 11222332 256 567777777888888888875 544
No 86
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.46 E-value=0.44 Score=42.34 Aligned_cols=191 Identities=12% Similarity=-0.018 Sum_probs=97.8
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCC--cEEEcCCC------CCCC
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTG--RWEMLPSM------HSPR 225 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~------~~~r 225 (390)
..++++|+.+++....-....-....++++- ++.+|+.... ...+.+||+... .-..+... ....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 142 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCC
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecccCCCCCCcccc
Confidence 3689999988775432111111112233332 5779988643 246889998765 22222211 1111
Q ss_pred cCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCC---CCcCCCCCEEEEE-C-CEEEEEecCC
Q 016416 226 RLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNV---NRAAQAPPLVAVV-D-NQLYAVEYLT 297 (390)
Q Consensus 226 ~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~-~-g~l~v~gg~~ 297 (390)
.....+++ ++.||+..+.. ...|.+||+....-..+....... ...-.....+++- + |.||+.+...
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~ 217 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN 217 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred CCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence 22333333 68999986421 346888996544333332111100 0000011234443 3 8999999888
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCC-CCCeEEEeeecCCC
Q 016416 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGP-EGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~~~i~~y~~~~ 360 (390)
+.|.+||+++++....-..+..... . .+++...+.+|+..|..-. ......|.+||+.+
T Consensus 218 ~~I~~~~~~~G~~~~~~~~~~~~~~---~-~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 218 GRIQCFKTDTKEFVREIKHASFGRN---V-FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp TEEEEEETTTCCEEEEECCTTTTTC---E-EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred CEEEEEECCCCcEEEEEeccccCCC---c-ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 9999999987766543222211110 0 1233344777777764321 11223577888776
No 87
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.43 E-value=0.2 Score=44.53 Aligned_cols=196 Identities=14% Similarity=0.002 Sum_probs=101.5
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEccc---------------ccCCeEEEE
Q 016416 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRE---------------LFDFAIWKY 160 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~---------------~~~~~~~~y 160 (390)
+..||+......+..+|+.......+................+.. ++.||+.-.. .....+++|
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 456887755556888998766544432211111111111112223 5678886421 122568999
Q ss_pred ECCCCcEeecCC-CCCCCcceeeeee-C-CEEEEEeccCCCCCccceEEEEECCC---CcEEEcCCCCCCCcCceEEEE-
Q 016416 161 SLVFRSWMKCEG-MNHPRCLFGSGSL-G-SIAIIAGGSDKNGHVLKSAELYDSTT---GRWEMLPSMHSPRRLCSGFFM- 233 (390)
Q Consensus 161 d~~t~~W~~~~~-~~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~~~~~~~r~~~~~~~~- 233 (390)
|+.+++...+.. +..+ .+++.- + +.+|+.-.. ...+.+|++.. +..+.+..++. ...+.+
T Consensus 171 d~~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d 237 (322)
T 2fp8_A 171 DPSTKETTLLLKELHVP---GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRN 237 (322)
T ss_dssp ETTTTEEEEEEEEESCC---CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS----EEEEEEC
T ss_pred eCCCCEEEEeccCCccC---cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC----CCCeEEC
Confidence 998877654321 1112 122322 3 468887431 35688999875 23433322221 333444
Q ss_pred -CCEEEEEecccCCC----ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 016416 234 -DGKFYVIGGMSSPT----VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 234 -~~~iyv~GG~~~~~----~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~ 308 (390)
+|+||+........ .....+.+||+....-..+.. +.... ......++..+++||+.+...+.|.+|+++.+
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~~--~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL-PPPFA--GEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC-CTTTT--TSCCCEEEEETTEEEEECSSCSEEEEEEC---
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC-CCCCc--cccceEEEEeCCEEEEeecCCCceEEEecccc
Confidence 57898875431100 012458889987554444432 21100 01222455678999999877789999987644
No 88
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.43 E-value=0.44 Score=43.53 Aligned_cols=191 Identities=10% Similarity=0.097 Sum_probs=94.1
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+++.|+. ...+.+||..+++-...-.. ....-.+++.. ++.+++.|+.+ ..+.+||..+++-.. .
T Consensus 108 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~--~ 176 (420)
T 3vl1_A 108 QMRRFILGTT--EGDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGEALISSSQD------MQLKIWSVKDGSNPR--T 176 (420)
T ss_dssp SSCEEEEEET--TSCEEEECTTSCEEEEETTS-SSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCCCE--E
T ss_pred CCCEEEEEEC--CCCEEEEeCCCcceeeeccc-ccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCCcCce--E
Confidence 5666666653 45788999887655433111 11111122222 45566666643 358899988664211 1
Q ss_pred CCCCCcCceE-EEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC-CCCCc------------------CCC
Q 016416 221 MHSPRRLCSG-FFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP-NVNRA------------------AQA 279 (390)
Q Consensus 221 ~~~~r~~~~~-~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~------------------~~~ 279 (390)
+......... +.. +++.++.|+.++ .+..||+.+.+-...-.... ..... ...
T Consensus 177 ~~~h~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 177 LIGHRATVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp EECCSSCEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred EcCCCCcEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 1111111222 222 566666666543 46778888765332211110 00000 000
Q ss_pred CCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCE-EEEEcCCCCCCCCeEEEeeec
Q 016416 280 PPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNE-LLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 280 ~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~-lyv~GG~~~~~~~~~~i~~y~ 357 (390)
......-++++++.|+..+.+.+||..+.+-... +..... ..-.+++.. ++. +++.|+.++ .|.+||
T Consensus 251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg------~i~vwd 319 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ--LPSKFT---CSCNSLTVDGNNANYIYAGYENG------MLAQWD 319 (420)
T ss_dssp CTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE--ECCTTS---SCEEEEEECSSCTTEEEEEETTS------EEEEEE
T ss_pred cceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE--cccccC---CCceeEEEeCCCCCEEEEEeCCC------eEEEEE
Confidence 0001113677888888888899999987653221 111111 011222222 344 777777553 588899
Q ss_pred CCC
Q 016416 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
..+
T Consensus 320 ~~~ 322 (420)
T 3vl1_A 320 LRS 322 (420)
T ss_dssp TTC
T ss_pred cCC
Confidence 876
No 89
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.41 E-value=0.2 Score=42.98 Aligned_cols=190 Identities=11% Similarity=-0.061 Sum_probs=97.3
Q ss_pred EEeCCCeeEEEecCC-CceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccc--ccCCeEEEEECCCCcEeecCCCCCCCc
Q 016416 102 LVCDPRGWEAFDPMK-KKWMALPKIPCDECFNHADKESLAVGSELLVFGRE--LFDFAIWKYSLVFRSWMKCEGMNHPRC 178 (390)
Q Consensus 102 ~~~~~~~~~~~d~~~-~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~--~~~~~~~~yd~~t~~W~~~~~~~~~r~ 178 (390)
+++....++.+|+.+ .+...+...+...... ...+..++..++++.. .....++.++..+.....+.....
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--- 130 (297)
T 2ojh_A 57 LLNSEGLLYRLSLAGDPSPEKVDTGFATICNN---DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP--- 130 (297)
T ss_dssp EEEETTEEEEEESSSCCSCEECCCTTCCCBCS---CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS---
T ss_pred EEEcCCeEEEEeCCCCCCceEecccccccccc---ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC---
Confidence 334456788899888 7666554332111111 1123345555555442 235688899988776555443221
Q ss_pred ceeeeee-C-CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCE-EEEEecccCCCccCceE
Q 016416 179 LFGSGSL-G-SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGK-FYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 179 ~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~v 253 (390)
....... + ..+++.++.++ ...++.+|..++....+...+.. ...+.. +++ |++.+..++ ...+
T Consensus 131 ~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~----~~~i 199 (297)
T 2ojh_A 131 SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEGR---NDGPDYSPDGRWIYFNSSRTG----QMQI 199 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSSC---EEEEEECTTSSEEEEEECTTS----SCEE
T ss_pred ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCCc---cccceECCCCCEEEEEecCCC----CccE
Confidence 1122221 3 44555554332 24677788888777665433221 122222 554 444433232 3467
Q ss_pred EEEeCCCCceEEccCCCCCCCCcCCCCCEEE-EECCEEEEEecC-----------CCeEEEEeCCCCceEEccC
Q 016416 254 EEFDLETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYL-----------TNMVKKYDKLKNTWDVLGR 315 (390)
Q Consensus 254 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~-----------~~~v~~yd~~~~~W~~v~~ 315 (390)
+.+++.+.....+....... ..++ .-+|+.+++++. ...++.||..+++...+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~-------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 200 WRVRVDGSSVERITDSAYGD-------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp EEEETTSSCEEECCCCSEEE-------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred EEECCCCCCcEEEecCCccc-------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 77887777776654322100 0111 124544444321 2569999999888766554
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.40 E-value=0.044 Score=49.63 Aligned_cols=150 Identities=11% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc-EEEc
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEML 218 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~ 218 (390)
++.+++.|+. ...+.+||..++.|..+..+.........+.+ ++..++.|+.++ .+.+||..++. |...
T Consensus 22 ~g~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 22 QRTEFVTTTA--TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWKQT 93 (377)
T ss_dssp SSSEEECCCS--SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS------SEEEC------CCCCE
T ss_pred CCCEEEEecC--CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCceeee
Confidence 4555555543 35677888888888776665443332222222 456667776543 47888988776 5433
Q ss_pred CCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCc-eEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEe
Q 016416 219 PSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRK-WRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVE 294 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~g 294 (390)
..+.........+.. ++++++.|+.++ .+..||..+.+ |..+..+... +......++. -++++++.|
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLKRP---LRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEECSS---CCSCEEEEEECTTSSEEEEE
T ss_pred eEecccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEeecc---cCCCeEEEEEcCCCCEEEEE
Confidence 222222222222222 566666666533 36677877654 3222222210 0101111222 256777777
Q ss_pred cCCCeEEEEeCCCC
Q 016416 295 YLTNMVKKYDKLKN 308 (390)
Q Consensus 295 g~~~~v~~yd~~~~ 308 (390)
+..+.+.+||..+.
T Consensus 165 ~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 165 CADRKAYVLSAYVR 178 (377)
T ss_dssp ESSSCEEEEEECCS
T ss_pred eCCCEEEEEEEEec
Confidence 77788999998644
No 91
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.40 E-value=0.98 Score=45.65 Aligned_cols=241 Identities=10% Similarity=0.084 Sum_probs=120.1
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCCcEeecCCCC-
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN- 174 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~- 174 (390)
..|++......+..||+....+..+...+.+.......-..+.. ++.|++.. ...-+.+||+.++++......+
T Consensus 321 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt---~~~Gl~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 321 GGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGT---NDGGLNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp SCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEE---SSSCEEEECTTTCCEEEECCC--
T ss_pred cCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEE---CCCCeEEEcCCCCcEEEEecCCC
Confidence 33444433456778888777665554333211111111112222 45677632 1235789999999887764321
Q ss_pred ------CCCcceeeeee-CCE-EEEEeccCCCCCccceEEEEECCCCcEEEcCCCCC--CCcCceEEEE--CCEEEEEec
Q 016416 175 ------HPRCLFGSGSL-GSI-AIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHS--PRRLCSGFFM--DGKFYVIGG 242 (390)
Q Consensus 175 ------~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~--~r~~~~~~~~--~~~iyv~GG 242 (390)
....-.+++.- ++. |++ |... .-+.+||+.+++++....... +.....+... +|.|++...
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWi-gt~~------~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~ 470 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYI-GTHA------GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL 470 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEE-EETT------TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES
T ss_pred CcccCCCCccEEEEEEcCCCCEEEE-EeCc------CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec
Confidence 01111233322 456 665 3321 237899999998877643111 1111122222 567776432
Q ss_pred ccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCcccc
Q 016416 243 MSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRAD 321 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~ 321 (390)
..+.+||+.+++|...................+. ..+|+|++... +.+.+||+.++++ .+........
T Consensus 471 --------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~ 539 (795)
T 4a2l_A 471 --------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSN 539 (795)
T ss_dssp --------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCG
T ss_pred --------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCC
Confidence 2478899999999877533110000000001121 23577887654 6799999999888 4431100000
Q ss_pred CCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016416 322 LSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 322 ~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.......+++. .+|.|++-.. .+ +.+||+++ .+++...
T Consensus 540 l~~~~i~~i~~d~~g~lWigT~-~G-------l~~~d~~~------~~~~~~~ 578 (795)
T 4a2l_A 540 VTKLFTNCIYEASNGIIWVGTR-EG-------FYCFNEKD------KQIKRYN 578 (795)
T ss_dssp GGGSCEEEEEECTTSCEEEEES-SC-------EEEEETTT------TEEEEEC
T ss_pred CCCCeeEEEEECCCCCEEEEeC-CC-------ceeECCCC------CcEEEeC
Confidence 00011123333 3567777543 11 66788776 4565543
No 92
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=96.37 E-value=0.13 Score=45.73 Aligned_cols=153 Identities=10% Similarity=-0.008 Sum_probs=84.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEE-cC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-LP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~ 219 (390)
++.||+.+.. ...+++||+.+++...+.... .....+++. -++++|+....... ....+.+||+.++..+. +.
T Consensus 55 ~g~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 55 QGQLFLLDVF--EGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp TSCEEEEETT--TCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSCEEEEC
T ss_pred CCCEEEEECC--CCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCCEEEEEEc
Confidence 5677776542 357899999988876643211 112223332 26778887543211 12468999998887653 22
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECC-EEEEEec
Q 016416 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDN-QLYAVEY 295 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg 295 (390)
...... ....+.. +|++|+.............++.||+.+.+...+..... ....++. -+| .||+.+.
T Consensus 130 ~~~~~~-~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~i~~~~dg~~l~v~~~ 201 (333)
T 2dg1_A 130 DLSTAY-CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS-------VANGIALSTDEKVLWVTET 201 (333)
T ss_dssp SSSSCC-CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES-------SEEEEEECTTSSEEEEEEG
T ss_pred cCccCC-cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC-------cccceEECCCCCEEEEEeC
Confidence 211111 2222233 67888864321111123568899998877665432100 0012222 244 5888876
Q ss_pred CCCeEEEEeCCC
Q 016416 296 LTNMVKKYDKLK 307 (390)
Q Consensus 296 ~~~~v~~yd~~~ 307 (390)
..+.|++||+.+
T Consensus 202 ~~~~i~~~d~~~ 213 (333)
T 2dg1_A 202 TANRLHRIALED 213 (333)
T ss_dssp GGTEEEEEEECT
T ss_pred CCCeEEEEEecC
Confidence 667899999864
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.36 E-value=0.066 Score=48.45 Aligned_cols=223 Identities=9% Similarity=-0.021 Sum_probs=101.2
Q ss_pred CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCc-EeecCCCCCCCccee
Q 016416 105 DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRS-WMKCEGMNHPRCLFG 181 (390)
Q Consensus 105 ~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~~ 181 (390)
....+..||..+..|..+..+...... -..+. .++.+++.|+. +..+.+||..+++ |.....+........
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~s~--d~~v~vwd~~~~~~~~~~~~~~~~~~~v~ 104 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKI----VTCVDWAPKSNRIVTCSQ--DRNAYVYEKRPDGTWKQTLVLLRLNRAAT 104 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSC----EEEEEECTTTCCEEEEET--TSSEEEC------CCCCEEECCCCSSCEE
T ss_pred CCCEEEEEEccCCceEEEEEEecCCce----EEEEEEeCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEecccCCceE
Confidence 456677888888777766655432211 11222 24555555553 3578888988776 433322222222222
Q ss_pred eeee--CCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCCCCC-CCcCceEEEE--CCEEEEEecccCCCccCceEEE
Q 016416 182 SGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPSMHS-PRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEE 255 (390)
Q Consensus 182 ~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~ 255 (390)
.+.+ +++.++.|+.++ .+.+||..++. |.....+.. .......+.. ++++.+.|+.++ .+..
T Consensus 105 ~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~------~i~i 172 (377)
T 3dwl_C 105 FVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR------KAYV 172 (377)
T ss_dssp EEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS------CEEE
T ss_pred EEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC------EEEE
Confidence 2222 456666666543 37788887764 433222222 1122222222 566667666542 3666
Q ss_pred EeCCCCceEE----------------ccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCce--EEccCC
Q 016416 256 FDLETRKWRK----------------IEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTW--DVLGRL 316 (390)
Q Consensus 256 yd~~~~~W~~----------------~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W--~~v~~~ 316 (390)
||+.+..... +..+ . +......++. -++++++.++..+.|.+||..+.+- ..+..+
T Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P----SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp EEECCSSCC-CCCSCSSCSCCCEEEEEECC-C----CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEecccCCCccccccccccchhhhhhcc-c----CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 7775433211 1111 1 0000111221 2567777777778999999887653 223322
Q ss_pred CccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 317 PVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...... .......-++++++.|+.+ .+.+|+...
T Consensus 248 ~~~~~~---v~~~~~s~~~~~l~~~~~~-------~~~~~~~~~ 281 (377)
T 3dwl_C 248 KLSQLP---LRSLLWANESAIVAAGYNY-------SPILLQGNE 281 (377)
T ss_dssp ECSSSC---EEEEEEEETTEEEEEESSS-------SEEEECCCC
T ss_pred cCCCCc---eEEEEEcCCCCEEEEEcCC-------cEEEEEeCC
Confidence 221110 0111223477877777543 244666654
No 94
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.35 E-value=0.66 Score=43.13 Aligned_cols=184 Identities=11% Similarity=0.055 Sum_probs=95.1
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+++.|+. ...+.+||..+.+-...-..... .-.+++. -++..++.|+.++ .+.+||..+++-...
T Consensus 279 ~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~-- 347 (464)
T 3v7d_B 279 HGNIVVSGSY--DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDT------TIRIWDLENGELMYT-- 347 (464)
T ss_dssp ETTEEEEEET--TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEE--
T ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCcEEEE--
Confidence 4444455542 45788999887654322111111 1112222 2455666666543 488999988764321
Q ss_pred CCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeE
Q 016416 221 MHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMV 300 (390)
Q Consensus 221 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v 300 (390)
+.........+..++...+.|+.++ .+..||+.+..-........ .........++++++.|+ .+.+
T Consensus 348 ~~~h~~~v~~~~~~~~~l~s~s~dg------~v~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 348 LQGHTALVGLLRLSDKFLVSAAADG------SIRGWDANDYSRKFSYHHTN------LSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp ECCCSSCEEEEEECSSEEEEEETTS------EEEEEETTTCCEEEEEECTT------CCCEEEEEECSSEEEEEE-TTEE
T ss_pred EeCCCCcEEEEEEcCCEEEEEeCCC------cEEEEECCCCceeeeecCCC------CccEEEEEeCCCEEEEec-CCeE
Confidence 2222223344556677666666543 47789988765322111111 111234456777777776 6899
Q ss_pred EEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016416 301 KKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 301 ~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
.+||..+++-......+.. ..-.++...++.+++.++.++ ...++++|.
T Consensus 415 ~iwd~~~g~~~~~~~~~~~-----~~v~~v~~~~~~l~~~~~~~g----~~~i~~ldf 463 (464)
T 3v7d_B 415 NIYNLRSGKLVHANILKDA-----DQIWSVNFKGKTLVAAVEKDG----QSFLEILDF 463 (464)
T ss_dssp EEEETTTCCEEESCTTTTC-----SEEEEEEEETTEEEEEEEETT----EEEEEEEEC
T ss_pred EEEECCCCcEEehhhccCC-----CcEEEEEecCCEEEEEEEeCC----eEEEEEeec
Confidence 9999998875442112211 111333344666666665442 334556664
No 95
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.34 E-value=0.35 Score=44.58 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=104.8
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016416 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
+...+....+..+|..+.+.... +.. +...-..+. .++.+++.|+. +..+.+||..+.+-.. .+....
T Consensus 123 l~s~s~Dg~i~vwd~~~~~~~~~--l~~----h~~~V~~v~~~~~~~~l~sgs~--D~~i~iwd~~~~~~~~--~~~~h~ 192 (410)
T 1vyh_C 123 MVSASEDATIKVWDYETGDFERT--LKG----HTDSVQDISFDHSGKLLASCSA--DMTIKLWDFQGFECIR--TMHGHD 192 (410)
T ss_dssp EEEEESSSCEEEEETTTCCCCEE--ECC----CSSCEEEEEECTTSSEEEEEET--TSCCCEEETTSSCEEE--CCCCCS
T ss_pred EEEEeCCCeEEEEECCCCcEEEE--Eec----cCCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeE--EEcCCC
Confidence 33333456677888776543211 111 001111122 24566666653 3467778877654322 222211
Q ss_pred cceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceE
Q 016416 178 CLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 178 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 253 (390)
.....+.+ ++..++.|+.+ ..+.+||..++..... +.........+.. ++.+++.|+.++ .+
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D~------~v 258 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSNDQ------TV 258 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETTS------CE
T ss_pred CCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCCC------eE
Confidence 11222222 45566666644 3588899988764321 1111111222222 566777766543 36
Q ss_pred EEEeCCCCceEEc-cCCCCCC----------C----CcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCc
Q 016416 254 EEFDLETRKWRKI-EGMYPNV----------N----RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPV 318 (390)
Q Consensus 254 ~~yd~~~~~W~~~-~~~~~~~----------~----~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~ 318 (390)
..||..+...... ....... . .............|.+++.|+..+.|.+||..+.+-.. .+..
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~--~~~~ 336 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM--TLVG 336 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE--EEEC
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE--EEEC
Confidence 6688777654321 1100000 0 00000000111235677778778899999988764221 1111
Q ss_pred cccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 319 RADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.. ..-.+++. -+++.++.|+.++ .|.+||..+
T Consensus 337 h~----~~v~~v~~~~~g~~l~s~s~D~------~i~vwd~~~ 369 (410)
T 1vyh_C 337 HD----NWVRGVLFHSGGKFILSCADDK------TLRVWDYKN 369 (410)
T ss_dssp CS----SCEEEEEECSSSSCEEEEETTT------EEEEECCTT
T ss_pred CC----CcEEEEEEcCCCCEEEEEeCCC------eEEEEECCC
Confidence 11 11122222 2566667777553 588999876
No 96
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.32 E-value=0.22 Score=45.12 Aligned_cols=183 Identities=11% Similarity=-0.023 Sum_probs=94.8
Q ss_pred EEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcc-eeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 144 ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCL-FGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 144 ~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
.+++.|+. +..+.+||..+.+....-........ .+++.. ++.+++.|+.+ ..+.++|..+.....+..
T Consensus 87 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~ 158 (383)
T 3ei3_B 87 TTVAVGSK--GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQVFAK 158 (383)
T ss_dssp TEEEEEEB--TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEEEEEC
T ss_pred CEEEEEcC--CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceEEEec
Confidence 34555543 45788899988776544332112222 223332 34666666543 358889998776655433
Q ss_pred CCCCCcCceEE-E-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCE-EEEEecC
Q 016416 221 MHSPRRLCSGF-F-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQ-LYAVEYL 296 (390)
Q Consensus 221 ~~~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~-l~v~gg~ 296 (390)
..........+ . -++++++.|+.+ ..+..||+....-..+..... ....++.. ++. +++.++.
T Consensus 159 ~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~~~ 225 (383)
T 3ei3_B 159 TDSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHKA-------KVTHAEFNPRCDWLMATSSV 225 (383)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSSS-------CEEEEEECSSCTTEEEEEET
T ss_pred cCCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCCC-------cEEEEEECCCCCCEEEEEeC
Confidence 22211112222 2 256666666543 357789985444333322111 01112222 344 7777777
Q ss_pred CCeEEEEeCCC----CceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 297 TNMVKKYDKLK----NTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~----~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+.+||..+ ........... .-.++... ++.+++.|+.++ .|.+||..+
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~~l~~~~~d~------~i~iwd~~~ 282 (383)
T 3ei3_B 226 DATVKLWDLRNIKDKNSYIAEMPHEK-------PVNAAYFNPTDSTKLLTTDQRN------EIRVYSSYD 282 (383)
T ss_dssp TSEEEEEEGGGCCSTTCEEEEEECSS-------CEEEEEECTTTSCEEEEEESSS------EEEEEETTB
T ss_pred CCEEEEEeCCCCCcccceEEEecCCC-------ceEEEEEcCCCCCEEEEEcCCC------cEEEEECCC
Confidence 78999999887 33322211111 11222222 566777776553 577888766
No 97
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.31 E-value=0.63 Score=42.49 Aligned_cols=223 Identities=12% Similarity=0.024 Sum_probs=109.1
Q ss_pred EEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016416 99 WVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
.|...+....+..+|..+.+-...- .... ..-..+.. ++.+++.|+. ...+.+||..+.+-.. .+...
T Consensus 111 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~----~~v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~--~~~~h 180 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNFNLQREID--QAHV----SEITKLKFFPSGEALISSSQ--DMQLKIWSVKDGSNPR--TLIGH 180 (420)
T ss_dssp EEEEEETTSCEEEECTTSCEEEEET--TSSS----SCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCCCE--EEECC
T ss_pred EEEEEECCCCEEEEeCCCcceeeec--cccc----CccEEEEECCCCCEEEEEeC--CCeEEEEeCCCCcCce--EEcCC
Confidence 3333334567788888766443321 1110 11112222 4555555543 4578899987654211 11111
Q ss_pred Ccc-eeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEc-CCCCCCCcCceEE----------------------
Q 016416 177 RCL-FGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML-PSMHSPRRLCSGF---------------------- 231 (390)
Q Consensus 177 r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~---------------------- 231 (390)
... .+++.. ++..++.|+.++ .+.+||..+++-... .....+......+
T Consensus 181 ~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 181 RATVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 111 122222 455566666543 378899887753322 1111111111111
Q ss_pred -EECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCE-EEEEecCCCeEEEEeCCCC
Q 016416 232 -FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQ-LYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 232 -~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~-l~v~gg~~~~v~~yd~~~~ 308 (390)
.-++++.+.|+.++ .+..||+.+.+-........ ......++. -++. +++.|+..+.+.+||..+.
T Consensus 255 ~s~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSG------VITVHNVFSKEQTIQLPSKF-----TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp SSCTTEEEEEEETTS------CEEEEETTTCCEEEEECCTT-----SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred EcCCCCEEEEEcCCC------eEEEEECCCCceeEEccccc-----CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 12566777666543 47789998765322211111 000111222 2344 7777877889999999875
Q ss_pred ce--EEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 309 TW--DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 309 ~W--~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+- ..+..-.. ..-..+...++++++.|+.++ .|.+|+..+
T Consensus 324 ~~~~~~~~~~~~------~~v~~~~~~~~~~l~s~~~d~------~v~iw~~~~ 365 (420)
T 3vl1_A 324 ECPVGEFLINEG------TPINNVYFAAGALFVSSGFDT------SIKLDIISD 365 (420)
T ss_dssp TSCSEEEEESTT------SCEEEEEEETTEEEEEETTTE------EEEEEEECC
T ss_pred cCchhhhhccCC------CCceEEEeCCCCEEEEecCCc------cEEEEeccC
Confidence 42 22211011 111234455788888888663 578888765
No 98
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.30 E-value=0.079 Score=47.45 Aligned_cols=149 Identities=7% Similarity=-0.074 Sum_probs=75.5
Q ss_pred eEEEEECCCCcEeecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCC-cCceEEEE
Q 016416 156 AIWKYSLVFRSWMKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR-RLCSGFFM 233 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~~ 233 (390)
.++.+|..++++..+...........++ .-++++|+.+... ....+.+||..+++++.+....... .....+..
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred EEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 4677888888876543221111111122 2367788775421 1356889999888877654322111 11223333
Q ss_pred -CC-EEEEEecccCCCccCceEEEEeCC-CCceEEccCCCCCC-CC---cCCCCCE-EE-EECCEEEEEecCCCeEEEEe
Q 016416 234 -DG-KFYVIGGMSSPTVSLTCGEEFDLE-TRKWRKIEGMYPNV-NR---AAQAPPL-VA-VVDNQLYAVEYLTNMVKKYD 304 (390)
Q Consensus 234 -~~-~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~-~~---~~~~~~~-~~-~~~g~l~v~gg~~~~v~~yd 304 (390)
+| .||+.+.. ...+..||+. +.+...+....... .. .....+. ++ .-+|++|+.+...+.+.+||
T Consensus 95 pdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 95 EARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp TTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 45 46665422 2346677774 33444333221100 00 0000111 22 23677888777778899999
Q ss_pred CC-CCceEEcc
Q 016416 305 KL-KNTWDVLG 314 (390)
Q Consensus 305 ~~-~~~W~~v~ 314 (390)
.. +++...+.
T Consensus 169 ~~~~g~~~~~~ 179 (347)
T 3hfq_A 169 VSDAGQLSEQS 179 (347)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCcEEEee
Confidence 88 56665543
No 99
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.18 Score=46.09 Aligned_cols=145 Identities=13% Similarity=0.064 Sum_probs=71.0
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016416 140 AVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
..++. ++.|+. ...+.+||..+.+-...-... ......++. -++..++.|+.++ .+.+||..++.....
T Consensus 215 ~~~~~-~~~~~~--~g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~ 284 (425)
T 1r5m_A 215 VDDDK-FVIPGP--KGAIFVYQITEKTPTGKLIGH-HGPISVLEFNDTNKLLLSASDDG------TLRIWHGGNGNSQNC 284 (425)
T ss_dssp EETTE-EEEECG--GGCEEEEETTCSSCSEEECCC-SSCEEEEEEETTTTEEEEEETTS------CEEEECSSSBSCSEE
T ss_pred cCCCE-EEEEcC--CCeEEEEEcCCCceeeeeccC-CCceEEEEECCCCCEEEEEcCCC------EEEEEECCCCccceE
Confidence 33555 444442 357889998876432111111 111112222 2455666666432 478898876543221
Q ss_pred CCCCCCCcC-ceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEec
Q 016416 219 PSMHSPRRL-CSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEY 295 (390)
Q Consensus 219 ~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg 295 (390)
+...... ...+.. ++ +++.++.+ ..+..||+.+.+-...-..... ....++. -++++++.++
T Consensus 285 --~~~~~~~i~~~~~~~~~-~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 285 --FYGHSQSIVSASWVGDD-KVISCSMD------GSVRLWSLKQNTLLALSIVDGV------PIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp --ECCCSSCEEEEEEETTT-EEEEEETT------SEEEEEETTTTEEEEEEECTTC------CEEEEEECTTSSEEEEEE
T ss_pred --ecCCCccEEEEEECCCC-EEEEEeCC------CcEEEEECCCCcEeEecccCCc------cEEEEEEcCCCCEEEEEE
Confidence 1111111 222333 55 55555543 3578899887653322111110 0001222 2567777777
Q ss_pred CCCeEEEEeCCCCc
Q 016416 296 LTNMVKKYDKLKNT 309 (390)
Q Consensus 296 ~~~~v~~yd~~~~~ 309 (390)
..+.|.+||..+..
T Consensus 350 ~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 350 MDGQVNVYDLKKLN 363 (425)
T ss_dssp TTSCEEEEECHHHH
T ss_pred CCCeEEEEECCCCc
Confidence 77889999987654
No 100
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.28 E-value=0.53 Score=41.36 Aligned_cols=213 Identities=12% Similarity=0.018 Sum_probs=109.9
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCC
Q 016416 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN 174 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~ 174 (390)
..||+.. ....++.+|+... .......+.. ...++ .++.+|+.........++.+|+.+++...+...+
T Consensus 43 g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~-------p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~ 114 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDGN-QQIHATVEGK-------VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP 114 (306)
T ss_dssp SCEEEEETTTTEEEEECTTCC-EEEEEECSSE-------EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred CCEEEEeCCCCeEEEECCCCc-eEEEEeCCCC-------ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC
Confidence 4466664 4567888998764 2221112211 11223 3567887653222235888998888876655444
Q ss_pred CCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCc---EEEcCC----CCC-CCcCceEEEE-CCEEEEEeccc
Q 016416 175 HPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGR---WEMLPS----MHS-PRRLCSGFFM-DGKFYVIGGMS 244 (390)
Q Consensus 175 ~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~----~~~-~r~~~~~~~~-~~~iyv~GG~~ 244 (390)
..+...+.+ ..++.+|+.-. ....++++|+.++. |..-+. .+. .......+.. ++.||+.-.
T Consensus 115 ~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~-- 186 (306)
T 2p4o_A 115 DAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT-- 186 (306)
T ss_dssp TCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET--
T ss_pred CccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC--
Confidence 434333333 23566777632 12468999987652 221110 111 1112222233 458898732
Q ss_pred CCCccCceEEEEeCCC-Cce---EEccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCcc
Q 016416 245 SPTVSLTCGEEFDLET-RKW---RKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVR 319 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~-~~W---~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~ 319 (390)
..+.+.+||+.. .+. ..+..... + ..++ .-+|++|+.....+.|.+||++ .+-..+...+.+
T Consensus 187 ----~~~~I~~~~~~~~g~~~~~~~~~~~~~-----P---~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~ 253 (306)
T 2p4o_A 187 ----EKMLLLRIPVDSTDKPGEPEIFVEQTN-----I---DDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG 253 (306)
T ss_dssp ----TTTEEEEEEBCTTSCBCCCEEEEESCC-----C---SSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred ----CCCEEEEEEeCCCCCCCccEEEeccCC-----C---CCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence 245788899865 222 11111111 1 1233 3468899998777889999986 444444333322
Q ss_pred ccCCCcceeEEEEe-----CCEEEEEcCC
Q 016416 320 ADLSNGWGLAFKAC-----GNELLVVGGQ 343 (390)
Q Consensus 320 ~~~~~~~~~~~~~~-----~~~lyv~GG~ 343 (390)
... -.+++.- ++.|||....
T Consensus 254 ~~~----p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 254 VIG----STAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CTT----EEEEEECCSTTTTTEEEEEECT
T ss_pred cCC----ceEEEEecccCCCCEEEEECCC
Confidence 111 0223222 2689998763
No 101
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.27 E-value=0.53 Score=43.34 Aligned_cols=146 Identities=14% Similarity=0.068 Sum_probs=77.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+++.|+. +..+.+||..+++.... +....... +++. -++.+++.|+.++. +.+||..+..-..
T Consensus 119 ~~~~l~s~s~--Dg~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D~~------i~iwd~~~~~~~~-- 186 (410)
T 1vyh_C 119 VFSVMVSASE--DATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSADMT------IKLWDFQGFECIR-- 186 (410)
T ss_dssp SSSEEEEEES--SSCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETTSC------CCEEETTSSCEEE--
T ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCCCe------EEEEeCCCCceeE--
Confidence 4556666653 45788999887654322 11111111 2221 25667777776543 6678887665432
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEc-cCCCCCCCCcCCCCCEEE-EECCEEEEEec
Q 016416 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI-EGMYPNVNRAAQAPPLVA-VVDNQLYAVEY 295 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg 295 (390)
.+.........+.+ ++..++.|+.+ ..+..||+.+..-... ..... ....+. ..++.+++.|+
T Consensus 187 ~~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~h~~-------~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 187 TMHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFTGHRE-------WVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEECCSS-------CEEEEEECTTSSEEEEEE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEeCCCc-------cEEEEEECCCCCEEEEEc
Confidence 22222222223333 56666666654 3577899988754321 11110 000111 12567777787
Q ss_pred CCCeEEEEeCCCCceEE
Q 016416 296 LTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 296 ~~~~v~~yd~~~~~W~~ 312 (390)
.-+.|.+||..+.+...
T Consensus 254 ~D~~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKA 270 (410)
T ss_dssp TTSCEEEEETTTCCEEE
T ss_pred CCCeEEEEECCCCceee
Confidence 77889999988776443
No 102
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.24 E-value=0.09 Score=46.18 Aligned_cols=215 Identities=12% Similarity=0.105 Sum_probs=108.2
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC-
Q 016416 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH- 175 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~- 175 (390)
..||... ....++.||+.+.....+. .+... ....+..++.+++.. ...+++||+.+++++.+.....
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~-----~~i~~~~dG~l~v~~----~~~l~~~d~~~g~~~~~~~~~~~ 94 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPV-----SSVALRQSGGYVATI----GTKFCALNWKEQSAVVLATVDND 94 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEE-CSSCE-----EEEEEBTTSSEEEEE----TTEEEEEETTTTEEEEEEECCTT
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEe-CCCce-----EEEEECCCCCEEEEE----CCeEEEEECCCCcEEEEEecCCC
Confidence 4566554 3567889999877543322 11110 011222355666543 3578999999988876644321
Q ss_pred -CCcce-ee-eeeCCEEEEEeccCCC-----CCccceEEEEECCCCcEEEc-CCCCCCCcCceEEEE--CC-EEEEEecc
Q 016416 176 -PRCLF-GS-GSLGSIAIIAGGSDKN-----GHVLKSAELYDSTTGRWEML-PSMHSPRRLCSGFFM--DG-KFYVIGGM 243 (390)
Q Consensus 176 -~r~~~-~~-~~~~~~lyv~GG~~~~-----~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~--~~-~iyv~GG~ 243 (390)
+.... .+ +.-++++|+..-.... ......++.+|+. +....+ ..+. ....... ++ .+|+....
T Consensus 95 ~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~----~pngi~~spdg~~lyv~~~~ 169 (297)
T 3g4e_A 95 KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVD----ISNGLDWSLDHKIFYYIDSL 169 (297)
T ss_dssp CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEES----BEEEEEECTTSCEEEEEEGG
T ss_pred CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccc----cccceEEcCCCCEEEEecCC
Confidence 11112 22 2225777774311110 0123468888875 333322 1111 1122333 44 58887432
Q ss_pred cCCCccCceEEEEeC--CCCceEE---ccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCC
Q 016416 244 SSPTVSLTCGEEFDL--ETRKWRK---IEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLP 317 (390)
Q Consensus 244 ~~~~~~~~~v~~yd~--~~~~W~~---~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~ 317 (390)
...+++||. .+..... +..++... ...-.+++ .+|.||+.....+.|.+||+++.+-...-.+|
T Consensus 170 ------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~----~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 170 ------SYSVDAFDYDLQTGQISNRRSVYKLEKEE----QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp ------GTEEEEEEECTTTCCEEEEEEEEECCGGG----CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred ------CCcEEEEeccCCCCcccCcEEEEECCCCC----CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 345777765 5555431 11111100 00012333 46889988765678999999977655433344
Q ss_pred ccccCCCcceeEEEEeC----CEEEEEcCCC
Q 016416 318 VRADLSNGWGLAFKACG----NELLVVGGQR 344 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~~----~~lyv~GG~~ 344 (390)
... ...+..+ +.|||.....
T Consensus 240 ~~~-------~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 240 VDK-------TTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp SSB-------EEEEEEESGGGCEEEEEEBCT
T ss_pred CCC-------ceEEEEeCCCCCEEEEEcCCc
Confidence 221 1222332 5899988754
No 103
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.38 Score=42.72 Aligned_cols=235 Identities=11% Similarity=0.060 Sum_probs=107.5
Q ss_pred eCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCC-----cEeecCCCCCC
Q 016416 104 CDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFR-----SWMKCEGMNHP 176 (390)
Q Consensus 104 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~-----~W~~~~~~~~~ 176 (390)
+....+..+|........+..+... .+...-..+. .++.+++.|+. +..+.+||.... .+..+..+...
T Consensus 31 ~~D~~i~lw~~~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s~--D~~v~iw~~~~~~~~~~~~~~~~~~~~h 106 (330)
T 2hes_X 31 STDRKIKLVSVKYDDFTLIDVLDET--AHKKAIRSVAWRPHTSLLAAGSF--DSTVSIWAKEESADRTFEMDLLAIIEGH 106 (330)
T ss_dssp ESSSCEEEEECSSSCCEEEEEECTT--CCCSCEEEEEECTTSSEEEEEET--TSCEEEEEC-------CCCEEEEEEC--
T ss_pred cCCCEEEEEEecCCCeEEEEEEecC--CccCCEEEEEECCCCCEEEEEeC--CCcEEEEEcccCcCccccceeEEEEcCC
Confidence 3456677888776543322211110 0111111222 24566666653 356777876432 12221111111
Q ss_pred Ccceeeeee--CCEEEEEeccCCCCCccceEEEEECCC--CcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccC
Q 016416 177 RCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTT--GRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSL 250 (390)
Q Consensus 177 r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 250 (390)
......+.+ +++.++.|+.++ .+.++|... ..++.+..+.........+.. ++.+++.|+.++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~----- 175 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDK------SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD----- 175 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTS------CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS-----
T ss_pred CCcEEEEEECCCCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC-----
Confidence 111112222 566666676543 478888742 234433222222222222332 566666666543
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-C--CEEEEEecCCCeEEEEeCCCC------ceEEccCCCcccc
Q 016416 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-D--NQLYAVEYLTNMVKKYDKLKN------TWDVLGRLPVRAD 321 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~--g~l~v~gg~~~~v~~yd~~~~------~W~~v~~~~~~~~ 321 (390)
.+..+|..+..|..+..+..... ....+... + +..++.|+.-+.|.+||..+. .|..+..++....
T Consensus 176 -~i~iW~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~ 250 (330)
T 2hes_X 176 -TVRIWKDYDDDWECVAVLNGHEG----TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250 (330)
T ss_dssp -CEEEEEEETTEEEEEEEECCCSS----CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred -eEEEEECCCCCeeEEEEccCCCC----cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence 35667777777765544432110 00112222 2 345556666677888876542 4655544432111
Q ss_pred CCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016416 322 LSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 322 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
..-.++....+.+++.||.++ .|.+||..+ ..|+.+.
T Consensus 251 ---~~v~~v~~s~~~~l~s~~~dg------~v~iw~~~~------~~~~~~~ 287 (330)
T 2hes_X 251 ---RQVYNVAWGFNGLIASVGADG------VLAVYEEVD------GEWKVFA 287 (330)
T ss_dssp ---SCEEEEEECTTSCEEEEETTS------CEEEEEEET------TEEEEEE
T ss_pred ---cceEEEEEcCCCEEEEEeCCC------EEEEEEcCC------CceEEEe
Confidence 111223233445666666553 377888876 4575543
No 104
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.20 E-value=0.23 Score=43.90 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=114.4
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe----CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV----GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~----~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
..|...+....+..+|..+.....+..+..+. ..-..+.. ++.+++.|+ .+..+.+||..+.+|..+..+
T Consensus 26 ~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~----~~V~~v~~~~~~~~~~l~s~s--~D~~v~iWd~~~~~~~~~~~~ 99 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHE----GPVWQVAWAHPMYGNILASCS--YDRKVIIWREENGTWEKSHEH 99 (316)
T ss_dssp CEEEEEETTTEEEEEEEETTEEEEEEEEECCS----SCEEEEEECCGGGSSCEEEEE--TTSCEEEECCSSSCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC----ccEEEEEeCCCCCCCEEEEEE--CCCEEEEEECCCCcceEEEEc
Confidence 33444444567778887665432222121111 11112222 144555554 345788999988766543322
Q ss_pred CCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCC-cEEEcCCCCCCCcCceEEEE---------------
Q 016416 174 NHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTG-RWEMLPSMHSPRRLCSGFFM--------------- 233 (390)
Q Consensus 174 ~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~~~~~--------------- 233 (390)
.........+.+ + +.+++.|+.++ .+.++|..++ .|.....+.........+..
T Consensus 100 ~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 173 (316)
T 3bg1_A 100 AGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSG 173 (316)
T ss_dssp CCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCS
T ss_pred cCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccc
Confidence 222211112222 2 55666676543 3677777665 57543222111111111111
Q ss_pred ----CCEEEEEecccCCCccCceEEEEeCCC-CceEEccCCCCCCCCcCCCCCEEEEE-C----CEEEEEecCCCeEEEE
Q 016416 234 ----DGKFYVIGGMSSPTVSLTCGEEFDLET-RKWRKIEGMYPNVNRAAQAPPLVAVV-D----NQLYAVEYLTNMVKKY 303 (390)
Q Consensus 234 ----~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~-~----g~l~v~gg~~~~v~~y 303 (390)
.+++++.|+.++ .+..+|..+ ..|..+..+..... ....++.. + +.+++.++.-+.|.+|
T Consensus 174 ~~~~~~~~l~sgs~D~------~v~lWd~~~~~~~~~~~~l~~h~~----~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 174 QKPNYIKRFASGGCDN------LIKLWKEEEDGQWKEEQKLEAHSD----WVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp CCCCCCCBEECCBTTS------BCCEEEECTTSCEEEEECCBCCSS----CEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cCccccceEEEecCCC------eEEEEEeCCCCccceeeecccCCC----ceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 124555555432 344567653 45766554433110 00112211 2 2567777777889999
Q ss_pred eCCC---CceEE--ccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCc
Q 016416 304 DKLK---NTWDV--LGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQH 377 (390)
Q Consensus 304 d~~~---~~W~~--v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~ 377 (390)
|..+ +.|.. +.... ..-.++. .-++++++.||.++ .|.+|+...+ ..|..+..+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~-------~~v~~v~~sp~g~~las~~~D~------~v~lw~~~~~-----g~~~~~~~~~~ 305 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFN-------DVVWHVSWSITANILAVSGGDN------KVTLWKESVD-----GQWVCISDVNK 305 (316)
T ss_dssp ECSSTTCCCCBCCEEEECS-------SCEEEEEECTTTCCEEEEESSS------CEEEEEECTT-----SCEEEEEECC-
T ss_pred EccCccccchhhhhhhcCC-------CcEEEEEEcCCCCEEEEEcCCC------eEEEEEECCC-----CcEEEeeeccC
Confidence 9876 33431 11111 1111222 23577777787664 3778887642 47998887753
No 105
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.19 E-value=1.2 Score=44.40 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=70.5
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCC--------CcceeeeeeCCEEEEEeccCCCCCccceEEEE
Q 016416 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHP--------RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
++.++.||+.+. ...++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+..+
T Consensus 67 ~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~Al 136 (689)
T 1yiq_A 67 IVVDGVMYTTGP---FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLEAI 136 (689)
T ss_dssp EEETTEEEEECG---GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEEE
T ss_pred EEECCEEEEEcC---CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEEEE
Confidence 567899998765 3468899998775 8764332210 011234566888888642 2458999
Q ss_pred ECCCCc--EEEcCC-CCC--CCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEE
Q 016416 209 DSTTGR--WEMLPS-MHS--PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRK 265 (390)
Q Consensus 209 d~~t~~--W~~~~~-~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 265 (390)
|..|++ |+.-.. -+. .....+-++.++.+|+-.+.... .....++.||..|.+ |+.
T Consensus 137 Da~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 137 DAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEE
T ss_pred ECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEe
Confidence 999886 876432 111 11122345679999884332111 124578999999876 875
No 106
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.19 E-value=1 Score=43.78 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=66.6
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCC---Cc---ceeeeeeCCEEEEEeccCCCCCccceEEEEEC
Q 016416 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHP---RC---LFGSGSLGSIAIIAGGSDKNGHVLKSAELYDS 210 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~---r~---~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 210 (390)
+..++.||+.+.. ..++.+|..|++ |+.-...+.. .+ ..+.++.+++||+... ...+..+|.
T Consensus 65 ~v~~g~vyv~~~~---~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~AlD~ 134 (582)
T 1flg_A 65 IVSDGVIYVTASY---SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVVALNK 134 (582)
T ss_dssp EEETTEEEEEETT---TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEEEEES
T ss_pred EEECCEEEEEcCC---CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEEEEEEC
Confidence 5678999987653 248899998775 8664432211 11 1234567889988532 245899999
Q ss_pred CCCc--EEEcCCCCCCC--cCceEEEECC------EEEEEecccCCCccCceEEEEeCCCCc--eEE
Q 016416 211 TTGR--WEMLPSMHSPR--RLCSGFFMDG------KFYVIGGMSSPTVSLTCGEEFDLETRK--WRK 265 (390)
Q Consensus 211 ~t~~--W~~~~~~~~~r--~~~~~~~~~~------~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 265 (390)
.|++ |+.-..-+... ...+-++.++ .||+-..... ......++.||..+.+ |+.
T Consensus 135 ~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e-~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 135 NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDE-FGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGG-GCCBCEEEEECTTTCCEEEEE
T ss_pred CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccc-cCCCCEEEEEECCCCCEEeec
Confidence 9886 87632211111 1122334566 6665321110 1124568899998765 864
No 107
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.19 E-value=0.54 Score=40.53 Aligned_cols=189 Identities=11% Similarity=0.098 Sum_probs=99.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCC---CC-Ccceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN---HP-RCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~---~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
++.+|+.... ...+.+||+.......++... .. ....+++. -++.+|+.+... ...+.+||.....-
T Consensus 40 ~g~l~v~~~~--~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~g~~~ 112 (286)
T 1q7f_A 40 QNDIIVADTN--NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQYGQFV 112 (286)
T ss_dssp TCCEEEEEGG--GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTTSCEE
T ss_pred CCCEEEEECC--CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCCCcEE
Confidence 5678876532 357889998755444433211 11 12223444 368999886321 24588899554433
Q ss_pred EEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEE
Q 016416 216 EMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYA 292 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v 292 (390)
..+..... .....+.+ +|++|+.... ...+.+||+.......+...... .....++. -+|++|+
T Consensus 113 ~~~~~~~~--~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~-----~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 113 RKFGATIL--QHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHL-----EFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEECTTTC--SCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTC-----SSEEEEEECSSSEEEE
T ss_pred EEecCccC--CCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCcc-----CCcEEEEECCCCCEEE
Confidence 33322111 11223333 6788887532 24688899876544444221110 00112332 3589999
Q ss_pred EecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 293 VEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+...+.|.+||+..+.-..+..-.. .. .-.+++. -+|+||+.....+ ..|.+||++.
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~~g~-~~----~p~~i~~d~~G~l~v~~~~~~-----~~i~~~~~~g 238 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGGEGI-TN----YPIGVGINSNGEILIADNHNN-----FNLTIFTQDG 238 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESCTTT-SC----SEEEEEECTTCCEEEEECSSS-----CEEEEECTTS
T ss_pred EECCCCEEEEEcCCCCEEEEEccCCc-cC----CCcEEEECCCCCEEEEeCCCC-----EEEEEECCCC
Confidence 88777899999987665444432110 00 0022323 3678888875331 1477888754
No 108
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.17 E-value=0.31 Score=41.70 Aligned_cols=223 Identities=12% Similarity=-0.012 Sum_probs=108.7
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCC-CcEeecCCCCCCCcceeee-e
Q 016416 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVF-RSWMKCEGMNHPRCLFGSG-S 184 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t-~~W~~~~~~~~~r~~~~~~-~ 184 (390)
..++.+|+.+.+...+...+.. .....+..++..+++++ ...++++|..+ ++...+...........++ .
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~~-----v~~~~~spdg~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPEL-----FEAPNWSPDGKYLLLNS---EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESSC-----CEEEEECTTSSEEEEEE---TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred eeEEEEeCCCCceeeeccCCcc-----eEeeEECCCCCEEEEEc---CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 3456678877665543221111 00112233555555553 35899999998 7766554332211111122 2
Q ss_pred eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCE-EEEEecccCCCccCceEEEEeCCCCc
Q 016416 185 LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGK-FYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 185 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
-+++.+++++.... ....++.+|..++.-+.+..... ....+.. +++ |++.++.++ ...++.+|..+..
T Consensus 94 pdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 94 PDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGV 164 (297)
T ss_dssp TTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCC
T ss_pred CCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCc
Confidence 25555555553322 24678999988877655543221 1122222 444 554554432 2357777888777
Q ss_pred eEEccCCCCCCCCcCCCCCEEEE-ECCE-EEEEec--CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE-EeCCEE
Q 016416 263 WRKIEGMYPNVNRAAQAPPLVAV-VDNQ-LYAVEY--LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK-ACGNEL 337 (390)
Q Consensus 263 W~~~~~~~~~~~~~~~~~~~~~~-~~g~-l~v~gg--~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~-~~~~~l 337 (390)
...+....... ..+.. -+|+ |++.+. ....++.++..+.....+....... ..+. .-+++.
T Consensus 165 ~~~~~~~~~~~-------~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~s~dg~~ 230 (297)
T 2ojh_A 165 ETRLTHGEGRN-------DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD-------WFPHPSPSGDK 230 (297)
T ss_dssp EEECCCSSSCE-------EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE-------EEEEECTTSSE
T ss_pred ceEcccCCCcc-------ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc-------CCeEECCCCCE
Confidence 76655433211 01222 2454 444442 2456777777777766654322110 1111 224554
Q ss_pred EEEcCCCCCC-----CCeEEEeeecCCC
Q 016416 338 LVVGGQRGPE-----GENVVLNSWCPKS 360 (390)
Q Consensus 338 yv~GG~~~~~-----~~~~~i~~y~~~~ 360 (390)
+++++..+.. .....+++||.++
T Consensus 231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 231 VVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEEcCCCCCcccccCceEEEEEecCC
Confidence 4444433211 0235689999887
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.14 E-value=0.31 Score=44.57 Aligned_cols=190 Identities=11% Similarity=0.003 Sum_probs=94.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEee-----cCCCCCCCcce-eeeee-CC-EEEEEeccCCCCCccceEEEEECCCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMK-----CEGMNHPRCLF-GSGSL-GS-IAIIAGGSDKNGHVLKSAELYDSTTG 213 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~-----~~~~~~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~t~ 213 (390)
++.+++.|+. +..+.+||..++.... +..+....... .++.. ++ .+++.|+.++ .+.+||..++
T Consensus 93 ~~~~l~s~s~--dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~iwd~~~~ 164 (402)
T 2aq5_A 93 NDNVIASGSE--DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN------VILVWDVGTG 164 (402)
T ss_dssp CTTEEEEEET--TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS------CEEEEETTTT
T ss_pred CCCEEEEEeC--CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC------EEEEEECCCC
Confidence 4566666653 4578899988764421 11111111111 22222 22 4666666543 4889999988
Q ss_pred cEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEcc-CCCCCCCCcCCCCCEEEEECCEE
Q 016416 214 RWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIE-GMYPNVNRAAQAPPLVAVVDNQL 290 (390)
Q Consensus 214 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~g~l 290 (390)
+....-...........+.. ++++++.|+.+ ..+..||+.+.+-...- ..... .........-++++
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 234 (402)
T 2aq5_A 165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDRPHEG----TRPVHAVFVSEGKI 234 (402)
T ss_dssp EEEEEECTTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECSSCS----SSCCEEEECSTTEE
T ss_pred CccEEEecCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeeccCCCC----CcceEEEEcCCCcE
Confidence 75432110111112222333 66666766643 35788999887643221 11110 00111223346788
Q ss_pred EEEe---cCCCeEEEEeCCCCce-EEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 291 YAVE---YLTNMVKKYDKLKNTW-DVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 291 ~v~g---g~~~~v~~yd~~~~~W-~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++.| +..+.+.+||..+..- .....+.... ....+... +..|++.|+.++ .|.+||..+
T Consensus 235 l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~g~~dg------~i~i~d~~~ 299 (402)
T 2aq5_A 235 LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS-----GVLLPFFDPDTNIVYLCGKGDS------SIRYFEITS 299 (402)
T ss_dssp EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS-----SCEEEEEETTTTEEEEEETTCS------CEEEEEECS
T ss_pred EEEeccCCCCceEEEEcCccccCCceEEeccCCC-----ceeEEEEcCCCCEEEEEEcCCC------eEEEEEecC
Confidence 8887 5678899999877542 1111111111 01122222 445667775443 477888876
No 110
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.10 E-value=0.72 Score=41.66 Aligned_cols=115 Identities=11% Similarity=0.017 Sum_probs=58.1
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC-CCC---CcCceEEEE--CCEEEEEecccCCCccCceEEEEeCC
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM-HSP---RRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLE 259 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~ 259 (390)
++ +++.|+.+ ..+.+||..++.-...-.. ... ......+.. ++++++.|+.++ ....+..||+.
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~---~~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN---SFGCITLYETE 266 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET---TEEEEEEEETT
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC---CCceEEEEECC
Confidence 45 66666543 3588999987764332111 001 112223333 566666666541 11467889988
Q ss_pred CCceEEccCCCCCC-------CCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCce
Q 016416 260 TRKWRKIEGMYPNV-------NRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 260 ~~~W~~~~~~~~~~-------~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
+.+-...-..+... ..+......++. -++++++.++..+.|.+||..+.+-
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 76532221110000 000101112222 2567777787788999999987653
No 111
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.07 E-value=0.66 Score=40.50 Aligned_cols=187 Identities=9% Similarity=-0.003 Sum_probs=97.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+|+..- ....+++||+.++....... +.. ..+++. -++++|+.. ...+.+||+.+++++.+..
T Consensus 24 ~~~l~~~d~--~~~~i~~~d~~~~~~~~~~~-~~~--~~~i~~~~dG~l~v~~--------~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 24 SNSLLFVDI--PAKKVCRWDSFTKQVQRVTM-DAP--VSSVALRQSGGYVATI--------GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp TTEEEEEET--TTTEEEEEETTTCCEEEEEC-SSC--EEEEEEBTTSSEEEEE--------TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEC--CCCEEEEEECCCCcEEEEeC-CCc--eEEEEECCCCCEEEEE--------CCeEEEEECCCCcEEEEEe
Confidence 467777643 24578999999886644322 211 112222 256666653 1358899999998877644
Q ss_pred CCC--CCcCceEEEE--CCEEEEEecccCC-----CccCceEEEEeCCCCceEEccC-CCCCCCCcCCCCCEEEEE-CC-
Q 016416 221 MHS--PRRLCSGFFM--DGKFYVIGGMSSP-----TVSLTCGEEFDLETRKWRKIEG-MYPNVNRAAQAPPLVAVV-DN- 288 (390)
Q Consensus 221 ~~~--~r~~~~~~~~--~~~iyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~-~g- 288 (390)
... +......+.+ +|++|+..-.... ......++++|+.. +...+.. +.. ...++.. ++
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~--------pngi~~spdg~ 161 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDI--------SNGLDWSLDHK 161 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESB--------EEEEEECTTSC
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccc--------ccceEEcCCCC
Confidence 322 1111222333 6788774321110 01234688888753 3333221 111 0123332 34
Q ss_pred EEEEEecCCCeEEEEeC--CCCceEE---ccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 289 QLYAVEYLTNMVKKYDK--LKNTWDV---LGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 289 ~l~v~gg~~~~v~~yd~--~~~~W~~---v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.||+.+...+.|++||. ++..... +..++..... . -+++. -+|+||+.....+ .|.+||+++
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~---p-~g~~~d~~G~lwva~~~~~------~v~~~d~~t 229 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI---P-DGMCIDAEGKLWVACYNGG------RVIRLDPVT 229 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE---E-EEEEEBTTSCEEEEEETTT------EEEEECTTT
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC---C-CeeEECCCCCEEEEEcCCC------EEEEEcCCC
Confidence 68888877789999986 4554421 2222211110 0 12222 3678888753221 488999986
No 112
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.04 E-value=0.29 Score=42.80 Aligned_cols=194 Identities=13% Similarity=0.111 Sum_probs=100.1
Q ss_pred CCEEEEEcc-----cccCCeEEEEECCCCcEeecCCCC---CCCcceeeee-eC-CEEEEEeccCCCCCccceEEEEECC
Q 016416 142 GSELLVFGR-----ELFDFAIWKYSLVFRSWMKCEGMN---HPRCLFGSGS-LG-SIAIIAGGSDKNGHVLKSAELYDST 211 (390)
Q Consensus 142 ~~~iy~~Gg-----~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~-~~-~~lyv~GG~~~~~~~~~~~~~yd~~ 211 (390)
++.+|+.+. ......+++||+.++++..+.... ......+++. -+ +.+|+.... ..+.+||+.
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-------~~l~~~d~~ 100 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-------LGLLVVQTD 100 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-------TEEEEEETT
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-------CCEEEEeCC
Confidence 567887710 112457899999888886553210 0011123333 24 788887541 258899998
Q ss_pred CCcEEEc-CCCCCC--CcCceEEEE--CCEEEEEecccC---------CCccCceEEEEeCCCCceEEccCCCCCCCCcC
Q 016416 212 TGRWEML-PSMHSP--RRLCSGFFM--DGKFYVIGGMSS---------PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAA 277 (390)
Q Consensus 212 t~~W~~~-~~~~~~--r~~~~~~~~--~~~iyv~GG~~~---------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~ 277 (390)
++.+.+ ...... ......+.. +|++|+...... .......+++||+. .+...+.....
T Consensus 101 -g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~------ 172 (314)
T 1pjx_A 101 -GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ------ 172 (314)
T ss_dssp -SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES------
T ss_pred -CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC------
Confidence 777665 332211 111222333 678888754320 01112468889987 66554321100
Q ss_pred CCCCEEEEE-----CC-EEEEEecCCCeEEEEeCC-CCceEE---ccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCC
Q 016416 278 QAPPLVAVV-----DN-QLYAVEYLTNMVKKYDKL-KNTWDV---LGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGP 346 (390)
Q Consensus 278 ~~~~~~~~~-----~g-~l~v~gg~~~~v~~yd~~-~~~W~~---v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~ 346 (390)
....++.. +| .+|+.+...+.+++||+. +++... +..++..... .. ..++. -+|+||+.....+
T Consensus 173 -~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~p-~~i~~d~~G~l~v~~~~~~- 247 (314)
T 1pjx_A 173 -FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG--GA-DGMDFDEDNNLLVANWGSS- 247 (314)
T ss_dssp -SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC--EE-EEEEEBTTCCEEEEEETTT-
T ss_pred -CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC--CC-CceEECCCCCEEEEEcCCC-
Confidence 00123333 34 578877667899999976 444332 1122211000 00 12222 3678888753221
Q ss_pred CCCeEEEeeecCCC
Q 016416 347 EGENVVLNSWCPKS 360 (390)
Q Consensus 347 ~~~~~~i~~y~~~~ 360 (390)
.|.+||+++
T Consensus 248 -----~i~~~d~~~ 256 (314)
T 1pjx_A 248 -----HIEVFGPDG 256 (314)
T ss_dssp -----EEEEECTTC
T ss_pred -----EEEEEcCCC
Confidence 477888875
No 113
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.04 E-value=0.69 Score=40.43 Aligned_cols=224 Identities=11% Similarity=0.089 Sum_probs=105.7
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016416 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
...|...+....+..+|..+..-... +..... ......+..++.+++.|+. +..+.+||..+++-... +...
T Consensus 25 ~~~l~s~~~dg~v~lWd~~~~~~~~~--~~~~~~--~v~~~~~~~~~~~l~s~s~--d~~i~vwd~~~~~~~~~--~~~h 96 (304)
T 2ynn_A 25 EPWVLTTLYSGRVELWNYETQVEVRS--IQVTET--PVRAGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVD--FEAH 96 (304)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEE--EECCSS--CEEEEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEE--EECC
T ss_pred CCEEEEEcCCCcEEEEECCCCceeEE--eeccCC--cEEEEEEeCCCCEEEEECC--CCEEEEEECCCCcEEEE--EeCC
Confidence 34455444566778888876643221 111000 0001122334555555543 45788999887753221 1111
Q ss_pred Ccce-eeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCCccCc
Q 016416 177 RCLF-GSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 177 r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~ 251 (390)
.... +++. -++.+++.|+.++ .+.++|..++.= ....+.........+.. ++.+++.|+.++
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~------ 163 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR------ 163 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTTE-EEEEECCCCSCEEEEEECTTCTTEEEEEETTS------
T ss_pred CCcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCcc-hhhhhcccCCcEEEEEECCCCCCEEEEEeCCC------
Confidence 1111 2222 2455666666543 377888765521 11111111111222332 446667666543
Q ss_pred eEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEEE----CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcc
Q 016416 252 CGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAVV----DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 252 ~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~----~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 326 (390)
.+..||+.+..-. .+.... . ........ ++.+++.|+.-+.|.+||..+.+-.. .+..... .
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~------~-~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~--~~~~h~~----~ 230 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQ------E-RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA--TLEGHMS----N 230 (304)
T ss_dssp EEEEEETTCSSCSEEEECCC------T-TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE--EEECCSS----C
T ss_pred eEEEEECCCCCccceeccCC------c-CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce--eeCCCCC----C
Confidence 4677887654311 010000 0 00111111 45677777778899999998765322 2211111 1
Q ss_pred eeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 327 GLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 327 ~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
-..++. -++.+++.|+.++ .|.+||..+
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg------~i~iWd~~~ 259 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDG------TLKIWNSST 259 (304)
T ss_dssp EEEEEECSSSSEEEEEETTS------CEEEEETTT
T ss_pred EEEEEECCCCCEEEEEcCCC------eEEEEECCC
Confidence 112222 2556777777664 477898876
No 114
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.04 E-value=0.62 Score=39.88 Aligned_cols=185 Identities=11% Similarity=-0.065 Sum_probs=102.5
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.||+... ....++++++....-..+..... ....+++.- ++.||+.-.. ...+.++|+....-+.+.
T Consensus 47 ~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~ 117 (267)
T 1npe_A 47 DKVVYWTDI--SEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ------LDRIEVAKMDGTQRRVLF 117 (267)
T ss_dssp TTEEEEEET--TTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEE
T ss_pred CCEEEEEEC--CCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC------CCEEEEEEcCCCCEEEEE
Confidence 568888653 34578999987764333221111 122334432 6899998542 356888998754433332
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEec
Q 016416 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEY 295 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg 295 (390)
.... ......++- +++||+..... ....++++++....-..+..... .....+++- +++||+...
T Consensus 118 ~~~~-~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~~~------~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 118 DTGL-VNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQDNL------GLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp CSSC-SSEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECTTC------SCEEEEEEETTTTEEEEEET
T ss_pred ECCC-CCccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEECCC------CCCcEEEEcCCCCEEEEEEC
Confidence 1111 111233333 68999974221 13467888876544333321111 011134443 579999998
Q ss_pred CCCeEEEEeCCCCceEEcc-CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 296 LTNMVKKYDKLKNTWDVLG-RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 296 ~~~~v~~yd~~~~~W~~v~-~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..+.|.++|+.+..=..+. .+..+ .+++..++.||+..... ..|.++|+++
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~~P--------~gi~~d~~~lyva~~~~------~~v~~~d~~~ 238 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQYP--------FAVTSYGKNLYYTDWKT------NSVIAMDLAI 238 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCCSE--------EEEEEETTEEEEEETTT------TEEEEEETTT
T ss_pred CCCEEEEEecCCCceEEEecCCCCc--------eEEEEeCCEEEEEECCC------CeEEEEeCCC
Confidence 8899999999764322221 11111 23445689999977533 2588999976
No 115
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.03 E-value=0.52 Score=41.29 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccC
Q 016416 334 GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 334 ~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p 376 (390)
++++++.|+.++ .|.+||.+++ ..|..+..++
T Consensus 317 ~~~~l~s~~~dg------~v~iw~~~~~-----~~~~~~~~~~ 348 (351)
T 3f3f_A 317 TGTILSSAGDDG------KVRLWKATYS-----NEFKCMSVIT 348 (351)
T ss_dssp SSCCEEEEETTS------CEEEEEECTT-----SCEEEEEEEC
T ss_pred CCCEEEEecCCC------cEEEEecCcC-----cchhheeehc
Confidence 567777777664 4889998874 5788887663
No 116
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.03 E-value=0.76 Score=40.88 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=76.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.++ .|+ ....+.+||..+++-... +....... +++. -++.+++.|+.++ .+.+||..++.-...
T Consensus 154 ~~~l~-s~s--~d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~- 221 (340)
T 1got_B 154 DNQIV-TSS--GDTTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQT- 221 (340)
T ss_dssp TTEEE-EEE--TTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEE-
T ss_pred CCcEE-EEE--CCCcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEE-
Confidence 55543 333 245788999888764322 11111111 2222 2566777777543 478899887754321
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCE-EE-EECCEEEEEec
Q 016416 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPL-VA-VVDNQLYAVEY 295 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~~~g~l~v~gg 295 (390)
+.........+.. ++++++.|+.++ .+..||+.+.+-...-..... ..... ++ ..+|++++.|+
T Consensus 222 -~~~h~~~v~~v~~~p~~~~l~s~s~d~------~v~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 222 -FTGHESDINAICFFPNGNAFATGSDDA------TCRLFDLRADQELMTYSHDNI-----ICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp -ECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCTTC-----CSCEEEEEECTTSSEEEEEE
T ss_pred -EcCCcCCEEEEEEcCCCCEEEEEcCCC------cEEEEECCCCcEEEEEccCCc-----ccceEEEEECCCCCEEEEEC
Confidence 1111111222222 667777776543 467789887653222111110 00111 11 23677888888
Q ss_pred CCCeEEEEeCCCCc
Q 016416 296 LTNMVKKYDKLKNT 309 (390)
Q Consensus 296 ~~~~v~~yd~~~~~ 309 (390)
..+.|.+||..+.+
T Consensus 290 ~d~~i~vwd~~~~~ 303 (340)
T 1got_B 290 DDFNCNVWDALKAD 303 (340)
T ss_dssp TTSEEEEEETTTCC
T ss_pred CCCeEEEEEcccCc
Confidence 88899999987654
No 117
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.02 E-value=0.68 Score=40.29 Aligned_cols=200 Identities=9% Similarity=0.044 Sum_probs=93.9
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCc-EEE
Q 016416 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGR-WEM 217 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~ 217 (390)
+.+++.|+ .+..+.+||..+++|..+..+.........+.+ + +.+++.|+.+ ..+.+||..++. +..
T Consensus 67 g~~l~s~s--~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 67 GTILASCS--YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSP 138 (297)
T ss_dssp CSEEEEEE--TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCC
T ss_pred CCEEEEEc--CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceee
Confidence 45555555 346788999988777554332222222222222 1 4566666643 347778876552 211
Q ss_pred cCCCCCCCcCceEEEE---------------CCEEEEEecccCCCccCceEEEEeCCCC--ceEEccCCCCCCCCcCCCC
Q 016416 218 LPSMHSPRRLCSGFFM---------------DGKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~---------------~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~ 280 (390)
. .+.........+.. ++++++.|+.++ .+..||..+. .|.....+.... ...
T Consensus 139 ~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~------~v~lwd~~~~~~~~~~~~~l~~H~----~~V 207 (297)
T 2pm7_B 139 I-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHS----DWV 207 (297)
T ss_dssp E-EEECCSSCEEEEEECCCC------------CCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCS----SCE
T ss_pred e-eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC------cEEEEEEcCCCceEEEEEEecCCC----Cce
Confidence 0 00000001111111 235666666543 3555665543 354433332211 011
Q ss_pred CEEEEE-C---CEEEEEecCCCeEEEEeCCCC--ceEEccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEE
Q 016416 281 PLVAVV-D---NQLYAVEYLTNMVKKYDKLKN--TWDVLGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVL 353 (390)
Q Consensus 281 ~~~~~~-~---g~l~v~gg~~~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i 353 (390)
..++.. + +.+++.++.-+.|.+||..+. .|....-.... .. ..-.++. .-++++++.||.++ .|
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~-~~--~~v~~~~~s~~g~~las~~~D~------~v 278 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEK-FP--DVLWRASWSLSGNVLALSGGDN------KV 278 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC-CS--SCEEEEEECSSSCCEEEEETTS------CE
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeeccc-CC--CcEEEEEECCCCCEEEEEcCCC------cE
Confidence 112222 2 467777777788999988763 46542110000 00 1111121 23677777777654 37
Q ss_pred eeecCCCCCCCCCCceEEeccc
Q 016416 354 NSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 354 ~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
.+|+...+ ..|..+..+
T Consensus 279 ~lw~~~~~-----g~w~~~~~~ 295 (297)
T 2pm7_B 279 TLWKENLE-----GKWEPAGEV 295 (297)
T ss_dssp EEEEECTT-----SCEEEC---
T ss_pred EEEEECCC-----CcEEecccc
Confidence 78887642 479887765
No 118
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=96.01 E-value=0.85 Score=41.25 Aligned_cols=185 Identities=12% Similarity=0.090 Sum_probs=102.5
Q ss_pred cCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEE-EEECC-----CC-cEEEcCCCCCCCc--CceEEEECCEEEEE
Q 016416 170 CEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAE-LYDST-----TG-RWEMLPSMHSPRR--LCSGFFMDGKFYVI 240 (390)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~-~yd~~-----t~-~W~~~~~~~~~r~--~~~~~~~~~~iyv~ 240 (390)
++..|..-..|+.+.+++.-|++|-.+++.. ..++- .|-+. .. .=+.++.- ..+. .++.-.++|.+|+.
T Consensus 277 L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~-PRe~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyYdgvLyLt 354 (670)
T 3ju4_A 277 LGLIPSVTEVHSFATIDNNGFAMGYHQGDVA-PREVGLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPCIKYYDGVLYLI 354 (670)
T ss_dssp CCSCTTCSEEEEEEECSSSCEEEEEEECSSS-SCEEEEEEETTTTTCTTCCEEEECCGG-GCTTEEEEEEEEETTEEEEE
T ss_pred cccccceeeeeeeeEecCCceEEEeccCCCC-cceeeEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEE
Confidence 3444544566788888888888887665543 33333 33221 11 12233221 1111 12233579999999
Q ss_pred ecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec-------------------CCCeEE
Q 016416 241 GGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY-------------------LTNMVK 301 (390)
Q Consensus 241 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg-------------------~~~~v~ 301 (390)
.-...+...-+.+.+-+..-..|..+..... . .......+.+++.||++|. +....+
T Consensus 355 TRgt~~~~~GS~L~rs~d~Gq~w~slrfp~n-v---HhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~ 430 (670)
T 3ju4_A 355 TRGTRGDRLGSSLHRSRDIGQTWESLRFPHN-V---HHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFY 430 (670)
T ss_dssp EEESCTTSCCCEEEEESSTTSSCEEEECTTC-C---CSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCSSCBCCEEEE
T ss_pred ecCcCCCCCcceeeeecccCCchhheecccc-c---cccCCCcceeCCEEEEEeccccccccccCCCcccccccCCceEE
Confidence 7544443445667777888889998764322 1 1233447789999999973 111121
Q ss_pred -E-----EeCCCCceEEccC-CCccccCCCcceeEEE-EeCCEE-EEEcCCCC----------------CCCCeEEEeee
Q 016416 302 -K-----YDKLKNTWDVLGR-LPVRADLSNGWGLAFK-ACGNEL-LVVGGQRG----------------PEGENVVLNSW 356 (390)
Q Consensus 302 -~-----yd~~~~~W~~v~~-~~~~~~~~~~~~~~~~-~~~~~l-yv~GG~~~----------------~~~~~~~i~~y 356 (390)
+ |..+.-+|..|.+ +-......+.+|.+.+ +-++.| |+|||.+- ..+...+++||
T Consensus 431 ~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~~~~~~Ghp~dlY~~ 510 (670)
T 3ju4_A 431 ARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCY 510 (670)
T ss_dssp EEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCCTTSTTCCCCEEEEE
T ss_pred EEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccCccccCCCCcceEEE
Confidence 1 3445557887753 2222222233454444 447776 67887541 12456788888
Q ss_pred cCCC
Q 016416 357 CPKS 360 (390)
Q Consensus 357 ~~~~ 360 (390)
...-
T Consensus 511 ri~i 514 (670)
T 3ju4_A 511 KMKI 514 (670)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7654
No 119
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.68 Score=42.08 Aligned_cols=147 Identities=9% Similarity=-0.006 Sum_probs=75.4
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCC----Ccce-eeeee-C-CEEEEEeccCCCCCccceEEEEECCCCcE
Q 016416 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP----RCLF-GSGSL-G-SIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~----r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
+.+++.|+. ...+.+||..+.+....-..+.. .... .++.. + ..+++.|+.++. ...+.+||..+..-
T Consensus 178 ~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~ 252 (416)
T 2pm9_A 178 AHVFASAGS--SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANT 252 (416)
T ss_dssp TTEEEEESS--SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTS
T ss_pred CcEEEEEcC--CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCC
Confidence 456666653 45789999988765333222211 1112 22222 2 356666665431 12578899887531
Q ss_pred EEcCCCC-CCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEEE-ECC-
Q 016416 216 EMLPSMH-SPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVAV-VDN- 288 (390)
Q Consensus 216 ~~~~~~~-~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~-~~g- 288 (390)
.+..+. ........+.. ++++++.|+.+ ..+..||+.+.+-.. +..... ....++. -++
T Consensus 253 -~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~ 318 (416)
T 2pm9_A 253 -PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD------NTVLLWNPESAEQLSQFPARGN-------WCFKTKFAPEAP 318 (416)
T ss_dssp -CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS------SEEEEECSSSCCEEEEEECSSS-------CCCCEEECTTCT
T ss_pred -CcEEeecCccCceeEEEeCCCCCCeEEEEeCC------CCEEEeeCCCCccceeecCCCC-------ceEEEEECCCCC
Confidence 111122 11122223333 56777777654 347789988765322 111111 1112333 234
Q ss_pred EEEEEecCCCeEEEEeCCCC
Q 016416 289 QLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 289 ~l~v~gg~~~~v~~yd~~~~ 308 (390)
.+++.++.-+.|.+||..+.
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp TEEEECCSSSEEEEEESCCC
T ss_pred CEEEEEecCCcEEEEEccCC
Confidence 67777777788999987664
No 120
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.00 E-value=0.26 Score=43.82 Aligned_cols=186 Identities=9% Similarity=0.020 Sum_probs=91.9
Q ss_pred EEEEEcccc-cCCeEEEEECCCCcEeecCCCCCCCcceeeeee-C---CEEEEEeccCCCCCccceEEEEECCCCc--EE
Q 016416 144 ELLVFGREL-FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-G---SIAIIAGGSDKNGHVLKSAELYDSTTGR--WE 216 (390)
Q Consensus 144 ~iy~~Gg~~-~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~---~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~ 216 (390)
.+++.|+.. ....+.+||..+++............-.+++.. + +.+++.|+.++ .+.+||..++. -.
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~ 105 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG------NLHIWNLEAPEMPVY 105 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS------CEEEECTTSCSSCSE
T ss_pred eEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC------eEEEEeCCCCCccEE
Confidence 455555421 245788899888776443222111111122222 2 46667776543 47889988765 12
Q ss_pred EcCCCCCCCcCceEE--------EECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEE--
Q 016416 217 MLPSMHSPRRLCSGF--------FMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVA-- 284 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~--------~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~-- 284 (390)
.+. ........+ .-++...+.|+.++ .+..||+.+.. ...+....... ......++
T Consensus 106 ~~~---~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~~ 173 (357)
T 3i2n_A 106 SVK---GHKEIINAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPVQGEN---KRDCWTVAFG 173 (357)
T ss_dssp EEC---CCSSCEEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCCTTSC---CCCEEEEEEE
T ss_pred EEE---ecccceEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceeccccCCCC---CCceEEEEEE
Confidence 221 111111111 12455666666532 47778888764 33333222110 00111121
Q ss_pred ---EECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe----CCEEEEEcCCCCCCCCeEEEeeec
Q 016416 285 ---VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC----GNELLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 285 ---~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~i~~y~ 357 (390)
..++.+++.|+..+.+..||..+.+-......... -.++... ++..+++|+.++ .|.+||
T Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~l~~~~~dg------~i~i~d 240 (357)
T 3i2n_A 174 NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNG-------VCSLEFDRKDISMNKLVATSLEG------KFHVFD 240 (357)
T ss_dssp CCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSC-------EEEEEESCSSSSCCEEEEEESTT------EEEEEE
T ss_pred eccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCc-------eEEEEcCCCCCCCCEEEEECCCC------eEEEEe
Confidence 14677888888778999999988764332221111 1223232 456666666543 466777
Q ss_pred CCC
Q 016416 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
..+
T Consensus 241 ~~~ 243 (357)
T 3i2n_A 241 MRT 243 (357)
T ss_dssp EEE
T ss_pred CcC
Confidence 654
No 121
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.00 E-value=0.27 Score=42.91 Aligned_cols=195 Identities=10% Similarity=0.079 Sum_probs=91.1
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee----CCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL----GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++..++.|+. +..+.+||..+.....+..+.........+.+ ++.+++.|+.+ ..+.++|..++.|..
T Consensus 20 ~g~~las~s~--D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D------~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 20 YGKRMATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVMIWKEENGRWSQ 91 (297)
T ss_dssp TSSEEEEEET--TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------TEEEEEEBSSSCBCC
T ss_pred CCCEEEEEeC--CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC------CEEEEEEcCCCceEE
Confidence 4555555553 35678888765433222222211111122222 25666667654 348889998887755
Q ss_pred cCCCCCCCcCceEEEE--C--CEEEEEecccCCCccCceEEEEeCCCCc-eE--EccCCCCCCC---CcCCC----CCEE
Q 016416 218 LPSMHSPRRLCSGFFM--D--GKFYVIGGMSSPTVSLTCGEEFDLETRK-WR--KIEGMYPNVN---RAAQA----PPLV 283 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~--~~~~~~~~~~---~~~~~----~~~~ 283 (390)
+..+.........+.. + +.+.+.|+.+ ..+..||+.+.. +. .+........ ..+.. ....
T Consensus 92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--------
T ss_pred EEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCC
Confidence 4322222222223333 2 5566666543 246667776542 21 1110000000 00000 0000
Q ss_pred EEECCEEEEEecCCCeEEEEeCCCCc--eEEccCCCccccCCCcceeEEEEe-C---CEEEEEcCCCCCCCCeEEEeeec
Q 016416 284 AVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRADLSNGWGLAFKAC-G---NELLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 284 ~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~-~---~~lyv~GG~~~~~~~~~~i~~y~ 357 (390)
...++++++.|+.-+.|..||..+.. |..+..+..... .-.++... + +.+++.|+.++ .|.+||
T Consensus 166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~----~V~~v~~sp~~~~~~~las~s~D~------~v~iWd 235 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYMASVSQDR------TCIIWT 235 (297)
T ss_dssp ----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTS------CEEEEE
T ss_pred CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC----ceEEEEECCCCCCceEEEEEECCC------cEEEEE
Confidence 00124577778777889999876643 655443332111 11222222 2 47777777664 377888
Q ss_pred CCC
Q 016416 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
.++
T Consensus 236 ~~~ 238 (297)
T 2pm7_B 236 QDN 238 (297)
T ss_dssp ESS
T ss_pred eCC
Confidence 765
No 122
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.96 E-value=1.3 Score=43.39 Aligned_cols=189 Identities=9% Similarity=-0.125 Sum_probs=96.8
Q ss_pred CeEEEEECCC------CcEeecC-CCCCCCcceeeeeeCCEEEEEeccCCCCC--ccceEEEEECC-CC---cEEEcCCC
Q 016416 155 FAIWKYSLVF------RSWMKCE-GMNHPRCLFGSGSLGSIAIIAGGSDKNGH--VLKSAELYDST-TG---RWEMLPSM 221 (390)
Q Consensus 155 ~~~~~yd~~t------~~W~~~~-~~~~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~yd~~-t~---~W~~~~~~ 221 (390)
..++++|..+ +..+.+. .-. .........-+++..++...+.... ...+++++|.. ++ ..+.+..-
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCceeEEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5789999988 6665554 211 1111111122454444433322111 13579999998 57 34433211
Q ss_pred CCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCC---CCEEEEE-CCEEEEEecC
Q 016416 222 HSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA---PPLVAVV-DNQLYAVEYL 296 (390)
Q Consensus 222 ~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~-~g~l~v~gg~ 296 (390)
. .......+. -+|++|+.+..++ ...++.+|+.+.++..+......... +.. ...++.. ++++++.+..
T Consensus 240 ~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~-p~w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 240 P-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAG-PLWTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp T-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSC-CCCSTTCCSEEECTTSCEEEEEBS
T ss_pred C-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccC-ccccccCceEeEeCCCEEEEEEEc
Confidence 1 111112222 2778877765432 34689999989999887653321100 000 1123333 6777777654
Q ss_pred -CCeEEEEeCCCCceEEccCCCccccCCCcceeEE-EEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 297 -TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAF-KACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 -~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...++.+|..+++...+..-... ...+ ...++.++++.+.. .....++.+|+.+
T Consensus 314 ~~~~l~~~d~~~~~~~~l~~~~~~-------~~~~~s~~~~~~~~~~~~~---~~~~~i~~~d~~~ 369 (662)
T 3azo_A 314 GAAVLGILDPESGELVDAAGPWTE-------WAATLTVSGTRAVGVAASP---RTAYEVVELDTVT 369 (662)
T ss_dssp SSCEEEEEETTTTEEEECCSSCCE-------EEEEEEEETTEEEEEEEET---TEEEEEEEEETTT
T ss_pred CccEEEEEECCCCcEEEecCCCCe-------EEEEEecCCCEEEEEEcCC---CCCCEEEEEECCC
Confidence 33566669888887666432111 1122 34466766665432 1344677788766
No 123
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.88 E-value=0.21 Score=44.79 Aligned_cols=182 Identities=10% Similarity=0.100 Sum_probs=92.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCC-CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN-HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
++.+++.|+. +..+.+||..++.|.....+. ........+.+ ++..++.|+.++ .+.++|..++.+..+
T Consensus 27 ~g~~las~~~--D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 27 AGTLLASCGG--DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQDDFECV 98 (345)
T ss_dssp TSSCEEEEET--TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECCC-EEEE
T ss_pred CCCEEEEEcC--CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC------cEEEEEccCCCeEEE
Confidence 4555555553 356788888887764322211 11111122222 566677777543 367788777766544
Q ss_pred CCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCc-eEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEe
Q 016416 219 PSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRK-WRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVE 294 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~g 294 (390)
..+.........+.. ++++.+.|+.++ .+..||+.+.. +..+..+.... .....++. -++.+++.|
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNSHT----QDVKHVVWHPSQELLASA 168 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEECCCC----SCEEEEEECSSSSCEEEE
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEecCcC----CCeEEEEECCCCCEEEEE
Confidence 333322222223333 567777776543 36678876542 33222221110 00001221 256677777
Q ss_pred cCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCC
Q 016416 295 YLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRG 345 (390)
Q Consensus 295 g~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~ 345 (390)
+.-+.+..||..++.|..+..+..... .-.++.. -+++.++.|+.++
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~~h~~----~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLEGHES----TVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECTTSSEEEEEETTS
T ss_pred eCCCcEEEEEecCCCEEEEEEecCCCC----ceEEEEECCCCCEEEEEeCCC
Confidence 777889999999988876544432211 1112222 2566666776553
No 124
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.87 E-value=1.4 Score=42.66 Aligned_cols=213 Identities=11% Similarity=0.075 Sum_probs=113.4
Q ss_pred cccEEEEEeC-CCeeEEEec-CCC--ceeeCCCCCCCc----ccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc-
Q 016416 96 VEHWVYLVCD-PRGWEAFDP-MKK--KWMALPKIPCDE----CFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS- 166 (390)
Q Consensus 96 ~~~~l~~~~~-~~~~~~~d~-~~~--~W~~l~~~p~~~----~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~- 166 (390)
.+..+|+... ...++++|+ .+. .|..-...+... +........+..++.||+... ...++.+|..+++
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA---NGHLLALDAKTGKI 137 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TSEEEEEETTTCCE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---CCEEEEEECCCCCE
Confidence 4678888876 678999999 654 587643322110 000111223456888888653 3578999998875
Q ss_pred -EeecCCC-CCC-CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCC------C-----------
Q 016416 167 -WMKCEGM-NHP-RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHS------P----------- 224 (390)
Q Consensus 167 -W~~~~~~-~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~------~----------- 224 (390)
|+.-..- +.. ......++.++.+|+..+.... .....+..||..+++ |+.-...+. +
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEEecCCCCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 7643211 100 1111233468888876432110 013568999999886 865321110 0
Q ss_pred -----------C---cC---ceEEEE---CCEEEEEeccc---------CCCccCceEEEEeCCCCc--eEEccCCCCCC
Q 016416 225 -----------R---RL---CSGFFM---DGKFYVIGGMS---------SPTVSLTCGEEFDLETRK--WRKIEGMYPNV 273 (390)
Q Consensus 225 -----------r---~~---~~~~~~---~~~iyv~GG~~---------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~ 273 (390)
. .. .....+ .+.||+-.|.. +...+...++.+|+.+++ |+.-.......
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 0 00 011223 47888865532 112224579999998874 76432111000
Q ss_pred CCcCCCCCEEEE--ECC---EEEEEecCCCeEEEEeCCCCc--eEE
Q 016416 274 NRAAQAPPLVAV--VDN---QLYAVEYLTNMVKKYDKLKNT--WDV 312 (390)
Q Consensus 274 ~~~~~~~~~~~~--~~g---~l~v~gg~~~~v~~yd~~~~~--W~~ 312 (390)
.......+.++. .+| ++++++...+.++++|.++.+ |..
T Consensus 297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 000011223332 367 466667667789999988874 654
No 125
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.87 E-value=1.6 Score=43.22 Aligned_cols=116 Identities=14% Similarity=0.069 Sum_probs=69.9
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCC--------CcceeeeeeCCEEEEEeccCCCCCccceEEEE
Q 016416 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHP--------RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
+..++.||+... ...++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+..+
T Consensus 63 ~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~al 132 (668)
T 1kv9_A 63 LFHDGVIYTSMS---WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLIAL 132 (668)
T ss_dssp EEETTEEEEEEG---GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEEEE
T ss_pred EEECCEEEEECC---CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEEEE
Confidence 567899998764 3478889988775 8764332211 011234556888887532 2458999
Q ss_pred ECCCCc--EEEcCCCCC--CCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEE
Q 016416 209 DSTTGR--WEMLPSMHS--PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRK 265 (390)
Q Consensus 209 d~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~ 265 (390)
|..|++ |+.-..-+. .....+-++.++.||+..+.... .....++.||..+++ |+.
T Consensus 133 D~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 133 DAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY-GVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp ETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEE
T ss_pred ECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc-CCCCEEEEEECCCCcEEEEe
Confidence 999886 876432111 11222335678998875332111 124568999998875 875
No 126
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.86 E-value=0.89 Score=40.29 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=93.2
Q ss_pred cEEEEEeCCCeeEEEecCCCce-eeCCCCCCCcccCCCCeeEEEeC----CEEEEEcccccCCeEEEEECCCCcEee-cC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKW-MALPKIPCDECFNHADKESLAVG----SELLVFGRELFDFAIWKYSLVFRSWMK-CE 171 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W-~~l~~~p~~~~~~~~~~~~~~~~----~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~ 171 (390)
..++..++...+..||..+.+. ..+.....+..........+..+ +.+++.|+. ...+.+||..+.+-.. +.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS--RGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET--TCEEEEECTTTCCEEEEEE
T ss_pred ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC--CCEEEEEEchhceEeeeec
Confidence 4455555556788888875433 22221111000000101122233 456666653 4578899988765422 21
Q ss_pred CCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEc-CCCCCCCcCceEEEE--CCEEEEEecccCC
Q 016416 172 GMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML-PSMHSPRRLCSGFFM--DGKFYVIGGMSSP 246 (390)
Q Consensus 172 ~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 246 (390)
.. ...-.++... ++.+++.|+.++ .+.+||..+++-... ..+.........+.. ++..++.|+.++
T Consensus 113 ~~--~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 183 (366)
T 3k26_A 113 GH--GNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH- 183 (366)
T ss_dssp SC--CSCEEEEEECSSCTTEEEEEETTS------CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred CC--CCcEEEEEECCCCCCEEEEEeCCC------eEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCC-
Confidence 11 1111122222 566777776543 488999988765432 222222222233332 456666666532
Q ss_pred CccCceEEEEeCCCCceEEc-cC-------------------CCC--CCCCcCCCCCEEEEECCEEEEEecCCCeEEEEe
Q 016416 247 TVSLTCGEEFDLETRKWRKI-EG-------------------MYP--NVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYD 304 (390)
Q Consensus 247 ~~~~~~v~~yd~~~~~W~~~-~~-------------------~~~--~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd 304 (390)
.+..||+.+.+-... .. .+. ....+......+... +.+++.++..+.+.+||
T Consensus 184 -----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd 257 (366)
T 3k26_A 184 -----SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWK 257 (366)
T ss_dssp -----CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEE
T ss_pred -----CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEe
Confidence 467788876532110 00 000 000011122234444 66777777788999999
Q ss_pred CCCC
Q 016416 305 KLKN 308 (390)
Q Consensus 305 ~~~~ 308 (390)
..+.
T Consensus 258 ~~~~ 261 (366)
T 3k26_A 258 PGKM 261 (366)
T ss_dssp ESST
T ss_pred CCCc
Confidence 7664
No 127
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.1 Score=46.57 Aligned_cols=193 Identities=12% Similarity=0.157 Sum_probs=92.9
Q ss_pred CCEEEEEcccccCCeEEEEECCC--CcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVF--RSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t--~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++..++.|+. +..+.+||... ..+..+..+.........+.+ ++.+++.|+.++ .+.++|..++.|+.
T Consensus 118 ~g~~las~s~--D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 118 DGYYLATCSR--DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKDYDDDWEC 189 (330)
T ss_dssp TSCEEEEEET--TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEEETTEEEE
T ss_pred CCCEEEEEeC--CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC------eEEEEECCCCCeeE
Confidence 4555555553 45788888743 233332222222221222222 456667776543 37778877777765
Q ss_pred cCCCCCCCcCceEEEE--C--CEEEEEecccCCCccCceEEEEeCCC------CceEEccCCCCCCCCcCCCCCEEEEEC
Q 016416 218 LPSMHSPRRLCSGFFM--D--GKFYVIGGMSSPTVSLTCGEEFDLET------RKWRKIEGMYPNVNRAAQAPPLVAVVD 287 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
+..+.........+.. + +...+.|+.++ .+..||+.+ ..|.....++... ......++...
T Consensus 190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~------~v~iw~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~v~~s~ 260 (330)
T 2hes_X 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS------TVRVWKYMGDDEDDQQEWVCEAILPDVH---KRQVYNVAWGF 260 (330)
T ss_dssp EEEECCCSSCEEEEEECCSSSSCEEEEEETTS------CEEEEEEEEECTTSCEEEEEEEECCSCC---SSCEEEEEECT
T ss_pred EEEccCCCCcEEEEEecCCCCeeEEEEEeCCC------eEEEEEecCCCccccceeEEeeeccccc---ccceEEEEEcC
Confidence 5433322222222222 2 34445555432 244455432 2454443332200 11111233334
Q ss_pred CEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe----CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 288 NQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC----GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 288 g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+++.++.-+.|.+||..+++|..+........ ......+.. ++++++.|+.++ .|.+||.++
T Consensus 261 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~---~~~v~~v~~~~~~~~~~las~s~Dg------~v~~W~~~~ 328 (330)
T 2hes_X 261 NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHG---VYEINVVKWLELNGKTILATGGDDG------IVNFWSLEK 328 (330)
T ss_dssp TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTT---TSCEEEEEEC-----CCEEEEETTS------EEEEEEC--
T ss_pred CCEEEEEeCCCEEEEEEcCCCceEEEeccccccc---cceEEEEEEecCCCceEEEEecCCC------cEEEEEecc
Confidence 4566667777889999999888876543211111 001222222 467788888664 578888764
No 128
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.77 E-value=0.68 Score=40.66 Aligned_cols=148 Identities=13% Similarity=0.117 Sum_probs=72.0
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016416 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
+.+++.|+.+ ..+.+||..++.....-. ........+.+ ++++++.|+.++ .+..||+.+.+-.
T Consensus 185 ~~~~~s~~~d------~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~Dg------~i~iwd~~~~~~~ 250 (340)
T 4aow_A 185 NPIIVSCGWD------KLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDG------QAMLWDLNEGKHL 250 (340)
T ss_dssp SCEEEEEETT------SCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTC------EEEEEETTTTEEE
T ss_pred CcEEEEEcCC------CEEEEEECCCCceeeEec--CCCCcEEEEEECCCCCEEEEEeCCC------eEEEEEeccCcee
Confidence 3455556543 247889988776543211 11111222222 567777776543 4677888765432
Q ss_pred EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE-ccC-CC-ccccCCCcceeEEEE-eCCEEEEE
Q 016416 265 KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV-LGR-LP-VRADLSNGWGLAFKA-CGNELLVV 340 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~~-~~-~~~~~~~~~~~~~~~-~~~~lyv~ 340 (390)
. .+.... ....++...+..++.++..+.+.+||..+..-.. +.. .. .....+...-.+++. -+++.++.
T Consensus 251 ~--~~~~~~-----~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 251 Y--TLDGGD-----IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp E--EEECSS-----CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred e--eecCCc-----eEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 2 111110 1112333334445555566788899987765322 111 00 000111111122222 25677777
Q ss_pred cCCCCCCCCeEEEeeecCCCC
Q 016416 341 GGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 341 GG~~~~~~~~~~i~~y~~~~~ 361 (390)
|+.++ .|.+||.+++
T Consensus 324 gs~Dg------~v~iW~~~tG 338 (340)
T 4aow_A 324 GYTDN------LVRVWQVTIG 338 (340)
T ss_dssp EETTS------CEEEEEEEC-
T ss_pred EeCCC------EEEEEeCCCc
Confidence 87664 4889998773
No 129
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.76 E-value=1.6 Score=42.51 Aligned_cols=213 Identities=13% Similarity=0.043 Sum_probs=112.1
Q ss_pred cccEEEEEeC-CCeeEEEec-CCC--ceeeCCCCCCCcc----cCCCCeeEEE--eCCE----EEEEcccccCCeEEEEE
Q 016416 96 VEHWVYLVCD-PRGWEAFDP-MKK--KWMALPKIPCDEC----FNHADKESLA--VGSE----LLVFGRELFDFAIWKYS 161 (390)
Q Consensus 96 ~~~~l~~~~~-~~~~~~~d~-~~~--~W~~l~~~p~~~~----~~~~~~~~~~--~~~~----iy~~Gg~~~~~~~~~yd 161 (390)
....+|+... ...++++|. .+. .|..-...+.... .......... .++. ||+... ...++.+|
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~---dg~l~AlD 137 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL---DGNVAALN 137 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---TSEEEEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---CCEEEEEE
Confidence 4678888876 678999999 655 5876443322100 0000112233 4566 877643 35788999
Q ss_pred CCCCc--EeecCCCCCC--CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCC------C-----
Q 016416 162 LVFRS--WMKCEGMNHP--RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHS------P----- 224 (390)
Q Consensus 162 ~~t~~--W~~~~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~------~----- 224 (390)
..|++ |+.-..-+.. ......++.++.||+-.+.... .....+..||..+++ |+.-...+. +
T Consensus 138 a~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 138 AETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp TTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 98875 7643211100 1111234568888775321110 123568999999886 876322111 0
Q ss_pred -----------------Cc-------CceEEE--ECCEEEEEecccC---------CCccCceEEEEeCCCCc--eEEcc
Q 016416 225 -----------------RR-------LCSGFF--MDGKFYVIGGMSS---------PTVSLTCGEEFDLETRK--WRKIE 267 (390)
Q Consensus 225 -----------------r~-------~~~~~~--~~~~iyv~GG~~~---------~~~~~~~v~~yd~~~~~--W~~~~ 267 (390)
.+ ....+. -++.||+-.|... ...+...++.+|+.|.+ |+.-.
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 00 001111 3678888655421 12234689999999875 76432
Q ss_pred CCCCCCCCcCCCCCEEEE---ECC---EEEEEecCCCeEEEEeCCCCc--eEE
Q 016416 268 GMYPNVNRAAQAPPLVAV---VDN---QLYAVEYLTNMVKKYDKLKNT--WDV 312 (390)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~---~~g---~l~v~gg~~~~v~~yd~~~~~--W~~ 312 (390)
.............+.++. .+| .+++.+...+.++++|.++.+ |..
T Consensus 297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 211100000111223333 246 566666677788888888774 654
No 130
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.73 E-value=0.38 Score=43.15 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=22.0
Q ss_pred CC-EEEEEecCCCeEEEEeCCCCceEEccCC
Q 016416 287 DN-QLYAVEYLTNMVKKYDKLKNTWDVLGRL 316 (390)
Q Consensus 287 ~g-~l~v~gg~~~~v~~yd~~~~~W~~v~~~ 316 (390)
+| .+|+.+...+.+.+||..+++...+..+
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~ 251 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTV 251 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence 45 5777776678899999988877665543
No 131
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.68 E-value=1.2 Score=40.61 Aligned_cols=219 Identities=11% Similarity=0.035 Sum_probs=121.1
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE---eCCEEEEEcccccCCeEEEEECCCCcEeecCC-
Q 016416 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA---VGSELLVFGRELFDFAIWKYSLVFRSWMKCEG- 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~---~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~- 172 (390)
+++|+ +.....+..+|+.......+..-.. ....++ .++.||+.-- ....++++++.......+..
T Consensus 87 ~~~l~-~~~~~~I~~i~~~~~~~~~~~~~~~-------~~~gl~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 87 EPVLL-FANRIDIRQVLPHRSEYTLLLNNLE-------NAIALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CCEEE-EECBSCEEEECTTSCCCEEEECSCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCEEEEECS
T ss_pred cceeE-eecCccceeeccCCCcEEEEecCCC-------ccEEEEEecCCCeEEEEeC--CCCcEEEEecCCCCcEEEEeC
Confidence 34443 4455678888887765544322111 112333 2578887642 34578999998776554422
Q ss_pred -CCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEEE--CCEEEEEecccCCC
Q 016416 173 -MNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFFM--DGKFYVIGGMSSPT 247 (390)
Q Consensus 173 -~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~ 247 (390)
+..+ ...++...++.||+.-.. ...++++++....-+.+. .+..| ...++- ++.||+.-..
T Consensus 157 ~~~~p-~glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~---- 222 (386)
T 3v65_B 157 GLESP-GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWG---- 222 (386)
T ss_dssp SCSCC-CCEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECS----
T ss_pred CCCCc-cEEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccC----
Confidence 2222 112222247899998542 346888888755433321 12222 223333 6899997321
Q ss_pred ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEecCCCeEEEEeCCCCceEEccC--CCccccCC
Q 016416 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEYLTNMVKKYDKLKNTWDVLGR--LPVRADLS 323 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~--~~~~~~~~ 323 (390)
....|+++++....-..+..... .....+++ .+++||+.....+.|+++|+....=..+.. ++.+
T Consensus 223 -~~~~I~r~~~dG~~~~~~~~~~~------~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P---- 291 (386)
T 3v65_B 223 -NTPRIEASSMDGSGRRIIADTHL------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP---- 291 (386)
T ss_dssp -SSCEEEEEETTSCSCEEEECSSC------SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSE----
T ss_pred -CCCEEEEEeCCCCCcEEEEECCC------CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCc----
Confidence 13568899987654333322111 01113444 378999999888999999987644333322 2111
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++++.++.||+..-.. ..|..++..+
T Consensus 292 ----~giav~~~~ly~td~~~------~~V~~~~~~~ 318 (386)
T 3v65_B 292 ----FAITVFEDSLYWTDWHT------KSINSANKFT 318 (386)
T ss_dssp ----EEEEEETTEEEEEETTT------TEEEEEETTT
T ss_pred ----eEEEEECCEEEEeeCCC------CeEEEEECCC
Confidence 34555889999987432 1466777544
No 132
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.61 E-value=1.2 Score=40.07 Aligned_cols=229 Identities=10% Similarity=0.012 Sum_probs=103.4
Q ss_pred EEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016416 99 WVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
.++..+....+..+|..+.+.......+.... ...+.. ++.+++.|+. ...+.+||..+.+-... +..
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~v~~~d~~~~~~~~~--~~~ 184 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVY-----SHHMSPVSTKHCLVAVGTR--GPKVQLCDLKSGSCSHI--LQG 184 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEE-----EEEECSSCSSCCEEEEEES--SSSEEEEESSSSCCCEE--ECC
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCcee-----eeEeecCCCCCcEEEEEcC--CCeEEEEeCCCcceeee--ecC
Confidence 34443445677888887765433222221100 001111 2335555542 35788899876643211 111
Q ss_pred CCcce-eeeee-C-CEEEEEeccCCCCCccceEEEEECCCCc--EEEcCC--------C----CCCCcCceEEEE--CCE
Q 016416 176 PRCLF-GSGSL-G-SIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPS--------M----HSPRRLCSGFFM--DGK 236 (390)
Q Consensus 176 ~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~--------~----~~~r~~~~~~~~--~~~ 236 (390)
..... +++.. + ..+++.|+.++ .+.+||..+.. ...+.. . .........+.. +++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 11111 22222 2 33677776543 37888887653 122210 0 111111222233 566
Q ss_pred EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCC
Q 016416 237 FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRL 316 (390)
Q Consensus 237 iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~ 316 (390)
.++.|+.++ .+..||+.+.+-........................+..+++++..+.+.+||..+.+-.. .+
T Consensus 259 ~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~ 330 (408)
T 4a11_B 259 HLLTVGTDN------RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT--ML 330 (408)
T ss_dssp EEEEEETTS------CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE--EE
T ss_pred EEEEecCCC------eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee--ee
Confidence 666666542 4778998876532221111000000001111111223344444455788999987765332 22
Q ss_pred CccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 317 PVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..... .-.++. .-++++++.|+.++ .|.+||+++
T Consensus 331 ~~~~~----~v~~~~~s~~~~~l~s~~~dg------~i~iw~~~~ 365 (408)
T 4a11_B 331 KGHYK----TVDCCVFQSNFQELYSGSRDC------NILAWVPSL 365 (408)
T ss_dssp CCCSS----CEEEEEEETTTTEEEEEETTS------CEEEEEECC
T ss_pred ccCCC----eEEEEEEcCCCCEEEEECCCC------eEEEEeCCC
Confidence 11111 112222 23567777777664 477888876
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.60 E-value=1.1 Score=39.35 Aligned_cols=233 Identities=13% Similarity=0.104 Sum_probs=109.9
Q ss_pred cEEEEEeC-CCeeEEEecCCCce-e-eCCCCCCCcccCCCCeeEEEe-CCEEEEEcccc-cCCeEEEEECCCCcEeecCC
Q 016416 98 HWVYLVCD-PRGWEAFDPMKKKW-M-ALPKIPCDECFNHADKESLAV-GSELLVFGREL-FDFAIWKYSLVFRSWMKCEG 172 (390)
Q Consensus 98 ~~l~~~~~-~~~~~~~d~~~~~W-~-~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~-~~~~~~~yd~~t~~W~~~~~ 172 (390)
..+|+... ...++.+|+.+.+. . .+..-..+ .. ...+.. ++.+| .+... ....+.+||..+++....-+
T Consensus 52 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~--~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~ 125 (331)
T 3u4y_A 52 SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS---MA--DVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIP 125 (331)
T ss_dssp CEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC---CC--CEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCceeEEecccCCCC---cc--ceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEE
Confidence 45666654 56788899887653 2 11111110 00 012223 34556 33221 22289999998887644322
Q ss_pred CCCCCcceeeeee-CC-EEEEEeccCCCCCccceEEEEECCCCc-EEEc--CCCCCCCcCceEEEE-CC-EEEEEecccC
Q 016416 173 MNHPRCLFGSGSL-GS-IAIIAGGSDKNGHVLKSAELYDSTTGR-WEML--PSMHSPRRLCSGFFM-DG-KFYVIGGMSS 245 (390)
Q Consensus 173 ~~~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~--~~~~~~r~~~~~~~~-~~-~iyv~GG~~~ 245 (390)
. ......++.- ++ .+|+.+.... ..+.+|+...+. -... ..++........+.. +| .+|+.+..
T Consensus 126 ~--~~~~~~~~~spdg~~l~~~~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-- 196 (331)
T 3u4y_A 126 I--PYDAVGIAISPNGNGLILIDRSSA-----NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI-- 196 (331)
T ss_dssp C--CTTEEEEEECTTSSCEEEEEETTT-----TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT--
T ss_pred C--CCCccceEECCCCCEEEEEecCCC-----ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC--
Confidence 1 1112233322 34 5777754321 125666654322 1110 001111111222222 55 47776532
Q ss_pred CCccCceEEEEeCCCCce-EEccCCCCCCCCcCCCCCEEEE-ECCE-EEEEecCCCeEEEEeCCCCceEEccCCCcc--c
Q 016416 246 PTVSLTCGEEFDLETRKW-RKIEGMYPNVNRAAQAPPLVAV-VDNQ-LYAVEYLTNMVKKYDKLKNTWDVLGRLPVR--A 320 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~-~~g~-l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~--~ 320 (390)
...+.+||+.+.+. ..+..++... ....++. -+|+ +|+.....+.+.+||+++++...+...+.. .
T Consensus 197 ----~~~v~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 267 (331)
T 3u4y_A 197 ----GNSIGILETQNPENITLLNAVGTNN-----LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI 267 (331)
T ss_dssp ----TTEEEEEECSSTTSCEEEEEEECSS-----CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred ----CCeEEEEECCCCcccceeeeccCCC-----CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc
Confidence 24588899988775 1122222211 1112332 3455 777766567899999999887555433222 0
Q ss_pred cCCCcce---eEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 321 DLSNGWG---LAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 321 ~~~~~~~---~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
......+ .++..-+..||+.++..+ .|.+||.++
T Consensus 268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~------~v~v~d~~~ 304 (331)
T 3u4y_A 268 DPRPLFGANQMALNKTETKLFISANISR------ELKVFTISG 304 (331)
T ss_dssp CCGGGTTCCCEEECTTSSEEEEEETTTT------EEEEEETTS
T ss_pred CCCCcccccceEECCCCCEEEEecCCCC------cEEEEEecC
Confidence 0000011 122222456777765432 588899876
No 134
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.52 E-value=2.2 Score=42.26 Aligned_cols=209 Identities=13% Similarity=0.108 Sum_probs=110.6
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCccc----CCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--E
Q 016416 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECF----NHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--W 167 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~----~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W 167 (390)
.+..+|+......++++|..+. .|..-...+..... ..........++.||+... ...++.+|..|++ |
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---DGRLIALDAKTGKAIW 141 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---TSEEEEEETTTCCEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---CCEEEEEECCCCCEee
Confidence 4678888776678899998755 48764433221100 0011223446788887653 3578999998875 8
Q ss_pred eecCCCCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEc--CCCCCCC----------------
Q 016416 168 MKCEGMNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEML--PSMHSPR---------------- 225 (390)
Q Consensus 168 ~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~--~~~~~~r---------------- 225 (390)
+.-..-+. .......++.++.+|+..+.... .....+..||..+++ |+.- +.-|...
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY-GVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eeccCCCCCcceecCCCEEECCEEEEeCCCCCc-CCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 65432111 11112334568888875332111 124579999999886 8763 1111110
Q ss_pred ------cC---ceEEEE---CCEEEEEeccc------------CCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCC
Q 016416 226 ------RL---CSGFFM---DGKFYVIGGMS------------SPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQA 279 (390)
Q Consensus 226 ------~~---~~~~~~---~~~iyv~GG~~------------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~ 279 (390)
.. .....+ ++.+|+-.+.. +...+...++.+|+.|++ |+.-......... ...
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~-~~~ 299 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF-TAT 299 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC-CCC
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc-cCC
Confidence 00 011233 46777765432 112234579999999875 7643221110000 000
Q ss_pred CCEE---EEECCE---EEEEecCCCeEEEEeCCCCc
Q 016416 280 PPLV---AVVDNQ---LYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 280 ~~~~---~~~~g~---l~v~gg~~~~v~~yd~~~~~ 309 (390)
.+.+ ...+|+ +++++...+.++++|..+++
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 1111 124665 55556666778888877765
No 135
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.49 E-value=0.91 Score=40.73 Aligned_cols=226 Identities=14% Similarity=0.127 Sum_probs=106.3
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCC----C
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEG----M 173 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~----~ 173 (390)
..|...+....+..+|..+.+....-..+... .....+..++..++.||. ...+.+|+.....-..... +
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~----v~~~~~sp~g~~lasg~~--d~~i~v~~~~~~~~~~~~~~~~~~ 150 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTW----VMACAYAPSGCAIACGGL--DNKCSVYPLTFDKNENMAAKKKSV 150 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSC----CCEEEECTTSSEEEEEST--TSEEEEEECCCCTTCCSGGGCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEecCCCC----EEEEEECCCCCEEEEeeC--CCCEEEEEEeccccccccccceee
Confidence 34444444566777887655433221111110 111223335566666664 3566777765431100000 0
Q ss_pred CCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE----CCEEEEEecccCCC
Q 016416 174 NHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM----DGKFYVIGGMSSPT 247 (390)
Q Consensus 174 ~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~ 247 (390)
.........+.+ ++..++.|+.+ ..+.++|..+++-... +.........+.+ ++.+++.|+.++
T Consensus 151 ~~h~~~v~~~~~~~~~~~l~t~s~D------~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg-- 220 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDMQILTASGD------GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCDK-- 220 (354)
T ss_dssp EECSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETTS--
T ss_pred eccCCcEEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCCC--
Confidence 000011111111 33344445433 3588899988764332 1111111112222 356777776543
Q ss_pred ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcc
Q 016416 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 326 (390)
.+..||+.+.+....-.... .....++. -++.+++.|+.-+.+..||..++.-..+-...... .
T Consensus 221 ----~v~~wd~~~~~~~~~~~~h~------~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~-----~ 285 (354)
T 2pbi_B 221 ----KAMVWDMRSGQCVQAFETHE------SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII-----F 285 (354)
T ss_dssp ----CEEEEETTTCCEEEEECCCS------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC-----S
T ss_pred ----eEEEEECCCCcEEEEecCCC------CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc-----c
Confidence 47789998876543221111 00011222 25677777877788999998876432221111100 1
Q ss_pred eeEEEE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 327 GLAFKA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 327 ~~~~~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+...+. .++++++.|+.++ .|.+||..+
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~------~i~vwd~~~ 315 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDY------TINVWDVLK 315 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred ceeEEEEeCCCCEEEEEECCC------cEEEEECCC
Confidence 112222 3677777777553 477898866
No 136
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.49 E-value=0.25 Score=43.68 Aligned_cols=194 Identities=11% Similarity=0.115 Sum_probs=92.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++..++.|+ .+..+.+||..+++...+..+....... +++.. ++.+++.|+.++ .+.++|..++.|..
T Consensus 24 ~g~~lasgs--~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 24 YGTRLATCS--SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR------KVIIWREENGTWEK 95 (316)
T ss_dssp GGCEEEEEE--TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS------CEEEECCSSSCCCE
T ss_pred CCCEEEEEe--CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC------EEEEEECCCCcceE
Confidence 345555554 2457788887766543222222111111 22221 256666676543 48889998887754
Q ss_pred cCCCCCCCcCceEEEE--C--CEEEEEecccCCCccCceEEEEeCCCC-ceEEccCCCCCCCC------cCCCCCE-EE-
Q 016416 218 LPSMHSPRRLCSGFFM--D--GKFYVIGGMSSPTVSLTCGEEFDLETR-KWRKIEGMYPNVNR------AAQAPPL-VA- 284 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~------~~~~~~~-~~- 284 (390)
+..+.........+.. + +.+++.|+.++ .+..||..+. .|.....+...... .+..... ..
T Consensus 96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp EEEECCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred EEEccCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccc
Confidence 4322222222222322 2 55666666543 3566777665 46543322211000 0000000 00
Q ss_pred E------ECCEEEEEecCCCeEEEEeCCC-CceEEccCCCccccCCCcceeEEEEe--C----CEEEEEcCCCCCCCCeE
Q 016416 285 V------VDNQLYAVEYLTNMVKKYDKLK-NTWDVLGRLPVRADLSNGWGLAFKAC--G----NELLVVGGQRGPEGENV 351 (390)
Q Consensus 285 ~------~~g~l~v~gg~~~~v~~yd~~~-~~W~~v~~~~~~~~~~~~~~~~~~~~--~----~~lyv~GG~~~~~~~~~ 351 (390)
. ..+++++.|+.-+.|..||..+ +.|..+..+..... . ...+.. + +.+++.|+.++
T Consensus 170 ~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~----~-V~~v~~sp~~~~~~~~las~s~D~------ 238 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD----W-VRDVAWAPSIGLPTSTIASCSQDG------ 238 (316)
T ss_dssp -CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS----C-EEEEECCCCSSCSCCEEEEEETTC------
T ss_pred cccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC----c-eEEEEecCCCCCCCceEEEEcCCC------
Confidence 0 0135666677777888898864 46877655432211 1 112222 2 25666666553
Q ss_pred EEeeecCCC
Q 016416 352 VLNSWCPKS 360 (390)
Q Consensus 352 ~i~~y~~~~ 360 (390)
.|.+|+.++
T Consensus 239 ~v~iw~~~~ 247 (316)
T 3bg1_A 239 RVFIWTCDD 247 (316)
T ss_dssp EEEEEECSS
T ss_pred eEEEEEccC
Confidence 466777654
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.48 E-value=1.7 Score=43.03 Aligned_cols=185 Identities=10% Similarity=-0.086 Sum_probs=92.1
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCC-cEEEcCCCCCCCc---Cc
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEMLPSMHSPRR---LC 228 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~---~~ 228 (390)
..++++|..+++-..+............+.. +++.++++..+.. .....+.++|..++ ..+.+........ ..
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence 5789999998876555432111111122222 4543344333322 13467899999998 6655421111110 01
Q ss_pred eEE-EE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--C-CEEEEEecCC----C
Q 016416 229 SGF-FM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--D-NQLYAVEYLT----N 298 (390)
Q Consensus 229 ~~~-~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~-g~l~v~gg~~----~ 298 (390)
..+ .- +|++++.+..++ ...++.+|........+...... ....... + +.||+.+... .
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~~~~-------v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKGEWE-------VTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp CCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCSSSC-------EEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred CceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCCCeE-------EEeeeEEcCCCCEEEEEecCCCCceE
Confidence 122 23 778666554432 35678888777767666432110 0011122 3 3566665433 3
Q ss_pred eEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 299 MVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 299 ~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++.+|..+.+...+..... .......-+++.+++..... .....+++||.++
T Consensus 383 ~l~~~d~~~~~~~~l~~~~~-------~~~~~~spdg~~l~~~~~~~--~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLTPESG-------MHRTQLSPDGSAIIDIFQSP--TVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEEETTCCCCEESCCSSS-------EEEEEECTTSSEEEEEEECS--SCSCEEEEEESSS
T ss_pred EEEEEEcCCCCceeccCCCc-------eEEEEECCCCCEEEEEecCC--CCCcEEEEEECCC
Confidence 78899998887666642110 11111122455444443221 1223577888766
No 138
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.48 E-value=1.3 Score=39.47 Aligned_cols=185 Identities=9% Similarity=0.049 Sum_probs=91.3
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016416 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
|...+....+..+|....+|.....+... +...-..+. .++..++.|+. +..+.+||..+..+..+..+....
T Consensus 31 las~~~D~~i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~s~--D~~v~iw~~~~~~~~~~~~~~~h~ 105 (345)
T 3fm0_A 31 LASCGGDRRIRIWGTEGDSWICKSVLSEG---HQRTVRKVAWSPCGNYLASASF--DATTCIWKKNQDDFECVTTLEGHE 105 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECSS---CSSCEEEEEECTTSSEEEEEET--TSCEEEEEECCC-EEEEEEECCCS
T ss_pred EEEEcCCCeEEEEEcCCCcceeeeeeccc---cCCcEEEEEECCCCCEEEEEEC--CCcEEEEEccCCCeEEEEEccCCC
Confidence 33334456677788877766432111110 001111222 24555666653 346777887777664443333222
Q ss_pred cceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCce
Q 016416 178 CLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 178 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 252 (390)
.....+.+ ++.+++.|+.++ .+.++|..++. +..+..+.........+.. ++.+++.|+.++ .
T Consensus 106 ~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~------~ 173 (345)
T 3fm0_A 106 NEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD------T 173 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS------C
T ss_pred CCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC------c
Confidence 22222222 566777776543 37788876543 3322222222112222222 566666666543 4
Q ss_pred EEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeC
Q 016416 253 GEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDK 305 (390)
Q Consensus 253 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~ 305 (390)
+..||..+..|..+..+..... ....++. -+|+.++.|+.-+.|.+||.
T Consensus 174 i~~w~~~~~~~~~~~~~~~h~~----~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 174 VKLYREEEDDWVCCATLEGHES----TVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEEEEEETTEEEEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEEEecCCCEEEEEEecCCCC----ceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 6778888888865443332110 0011222 25667777777778888874
No 139
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.43 E-value=0.39 Score=48.42 Aligned_cols=186 Identities=10% Similarity=0.049 Sum_probs=92.1
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++..++.|+ ....+.+||..+++....-....... .+++ .-++..+++|+.+ ..+.+||..++.....-
T Consensus 24 ~~~~la~~~--~~g~v~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~- 93 (814)
T 3mkq_A 24 TEPWVLTTL--YSGRVEIWNYETQVEVRSIQVTETPV-RAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVVDF- 93 (814)
T ss_dssp SSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCE-EEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEEEE-
T ss_pred CCCEEEEEe--CCCEEEEEECCCCceEEEEecCCCcE-EEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEE-
Confidence 344444444 24578889988775432211111111 1121 2245566666643 35889999888764321
Q ss_pred CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecC
Q 016416 221 MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYL 296 (390)
Q Consensus 221 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~ 296 (390)
.........+.. ++...+.|+.+ ..+..||..++ |.....+... ......++.. ++.+++.++.
T Consensus 94 -~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~-~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 94 -EAHPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENN-WALEQTFEGH----EHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp -ECCSSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGT-SEEEEEEECC----SSCEEEEEEETTEEEEEEEEET
T ss_pred -ecCCCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCC-ceEEEEEcCC----CCcEEEEEEEcCCCCEEEEEeC
Confidence 111111222222 55555555543 35777888765 2221111110 0011123333 4678888888
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe---CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC---GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.|.+||..+..-........... . ..+... ++.++++|+.++ .|.+||..+
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~----v-~~~~~~~~~~~~~l~~~~~dg------~i~~~d~~~ 217 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERG----V-NYVDYYPLPDKPYMITASDDL------TIKIWDYQT 217 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTC----C-CEEEECCSTTCCEEEEECTTS------EEEEEETTT
T ss_pred CCeEEEEECCCCcceeEEecCCCCC----E-EEEEEEECCCCCEEEEEeCCC------EEEEEECCC
Confidence 8899999987654222111111000 0 112222 677777777653 578888866
No 140
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.40 E-value=1.3 Score=39.97 Aligned_cols=153 Identities=7% Similarity=-0.008 Sum_probs=74.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+++.|+. ...+.+||..+.+-...-..+........... ++.+++.|+.++ .+.+||..++.-...
T Consensus 111 ~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~~~~~~~~- 181 (408)
T 4a11_B 111 DTGMFTSSSF--DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLKSGSCSHI- 181 (408)
T ss_dssp CTTCEEEEET--TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS------SEEEEESSSSCCCEE-
T ss_pred CCcEEEEEeC--CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCCCcceeee-
Confidence 3445555542 45788999888765443322222221111111 344666666543 488899887643221
Q ss_pred CCCCCCcCceEEEE--CCE-EEEEecccCCCccCceEEEEeCCCCc--eEEccCCCC--------CCCCcCCCCCEEEE-
Q 016416 220 SMHSPRRLCSGFFM--DGK-FYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYP--------NVNRAAQAPPLVAV- 285 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~--------~~~~~~~~~~~~~~- 285 (390)
+.........+.. ++. +++.|+.++ .+..||+.+.. ...+..... ....+......++.
T Consensus 182 -~~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 182 -LQGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp -ECCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred -ecCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 1111112222222 333 666666543 36778887653 222211000 00000101111222
Q ss_pred ECCEEEEEecCCCeEEEEeCCCCce
Q 016416 286 VDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 286 ~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
-+++.++.++..+.+.+||..+.+-
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCB
T ss_pred CCCCEEEEecCCCeEEEEECCCCcc
Confidence 2566777777778899999987653
No 141
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.40 E-value=1.3 Score=39.09 Aligned_cols=216 Identities=11% Similarity=0.031 Sum_probs=116.3
Q ss_pred EEeCCCeeEEEecCCCceeeC-CCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCC----CcEeec-C-
Q 016416 102 LVCDPRGWEAFDPMKKKWMAL-PKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVF----RSWMKC-E- 171 (390)
Q Consensus 102 ~~~~~~~~~~~d~~~~~W~~l-~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t----~~W~~~-~- 171 (390)
++.....+..+|+.......+ +.+.. ...+.. ++.||+... ....++++++.. .....+ +
T Consensus 5 l~~~~~~I~~i~~~~~~~~~~~~~~~~--------p~g~~~d~~~~~ly~~D~--~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 5 FFTNRHEVRKMTLDRSEYTSLIPNLRN--------VVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp EEECBSSEEEEETTSCCCEEEECSCSS--------EEEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECS
T ss_pred EEECCCeEEEEECCCcceEehhcCCCc--------eEEEEEEeCCCEEEEEEC--CCCcEEEEECCCCCCCcccEEEEeC
Confidence 334456778889887765543 22211 122332 578888753 245788998876 222222 1
Q ss_pred CCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEE--ECCEEEEEecccC
Q 016416 172 GMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFF--MDGKFYVIGGMSS 245 (390)
Q Consensus 172 ~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~ 245 (390)
.+..+ .++++ .++.||+.-.. ...+.++|+....-+.+. .+..| ...++ .++.||+....
T Consensus 75 ~~~~p---~glavd~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~-- 140 (316)
T 1ijq_A 75 DIQAP---DGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG-- 140 (316)
T ss_dssp SCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS--
T ss_pred CCCCc---CEEEEeecCCeEEEEECC------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC--
Confidence 12222 23443 47899998432 356889998765433322 22222 23333 26899997421
Q ss_pred CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCC
Q 016416 246 PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLS 323 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~ 323 (390)
....|+++++....-..+..... .....+++- +++||+.....+.|+++|++...=+.+........
T Consensus 141 ---~~~~I~~~~~dG~~~~~~~~~~~------~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~-- 209 (316)
T 1ijq_A 141 ---TPAKIKKGGLNGVDIYSLVTENI------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA-- 209 (316)
T ss_dssp ---SSCEEEEEETTSCCEEEEECSSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS--
T ss_pred ---CCCeEEEEcCCCCCeEEEEECCC------CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccC--
Confidence 12468889886544333322111 011134544 68999999888999999997654344332111111
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.-.+++..+++||+.-... ..|.++++.+
T Consensus 210 --~P~giav~~~~ly~~d~~~------~~V~~~~~~~ 238 (316)
T 1ijq_A 210 --HPFSLAVFEDKVFWTDIIN------EAIFSANRLT 238 (316)
T ss_dssp --SEEEEEEETTEEEEEETTT------TEEEEEETTT
T ss_pred --CcEEEEEECCEEEEEECCC------CeEEEEeCCC
Confidence 0134555789999987432 1466666654
No 142
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=95.39 E-value=1.3 Score=39.12 Aligned_cols=221 Identities=7% Similarity=-0.060 Sum_probs=110.6
Q ss_pred eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--CCEEEEEcccccCCeEEEEECCCC--cEeecCCC------CCCC
Q 016416 108 GWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFGRELFDFAIWKYSLVFR--SWMKCEGM------NHPR 177 (390)
Q Consensus 108 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~~t~--~W~~~~~~------~~~r 177 (390)
.+..+|+.+.+......... + .....+++ ++.+|+... ....+.+||+... .-..+... ....
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~---~--~~p~gia~d~~g~l~v~d~--~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 142 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNL---F--YLPHGLSIDTDGNYWVTDV--ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142 (329)
T ss_dssp CEEEECTTTCCEEEEECTTT---C--SSEEEEEECTTSCEEEEET--TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCC
T ss_pred cEEEEECCCCeEEeccCCCc---c--CCceEEEECCCCCEEEEEC--CCCEEEEEeCCCCeEEEEEecccCCCCCCcccc
Confidence 47778887665432111000 0 01122333 567888654 2457899998654 22222210 1111
Q ss_pred -cceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC-------CCCCcCceEEEE--C-CEEEEEeccc
Q 016416 178 -CLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM-------HSPRRLCSGFFM--D-GKFYVIGGMS 244 (390)
Q Consensus 178 -~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-------~~~r~~~~~~~~--~-~~iyv~GG~~ 244 (390)
...++++- ++.+|+..++. ...+.+||+....-..+... +........+.+ + +.||+....
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~- 216 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE- 216 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-
T ss_pred CCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-
Confidence 12234443 68999997531 24588999654433333211 111122333433 4 899998532
Q ss_pred CCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec-------CCCeEEEEeCCCCceEEc-cCC
Q 016416 245 SPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY-------LTNMVKKYDKLKNTWDVL-GRL 316 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg-------~~~~v~~yd~~~~~W~~v-~~~ 316 (390)
...|.+||+.+++....-..+... .....++...+.+|...| ....+.+||..+++.... ...
T Consensus 217 -----~~~I~~~~~~~G~~~~~~~~~~~~----~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~ 287 (329)
T 3fvz_A 217 -----NGRIQCFKTDTKEFVREIKHASFG----RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV 287 (329)
T ss_dssp -----TTEEEEEETTTCCEEEEECCTTTT----TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS
T ss_pred -----CCEEEEEECCCCcEEEEEeccccC----CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC
Confidence 346888999877765432222110 000122333355555544 345899999888875553 211
Q ss_pred CccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 317 PVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.... .-.+++. -+|.|||....++ .|.+|+++.
T Consensus 288 ~~~~~----~p~~ia~~~dG~lyvad~~~~------~I~~~~~~~ 322 (329)
T 3fvz_A 288 RKHFD----MPHDIVASEDGTVYIGDAHTN------TVWKFTLTE 322 (329)
T ss_dssp SSCCS----SEEEEEECTTSEEEEEESSSC------CEEEEEEEE
T ss_pred CCccC----CeeEEEECCCCCEEEEECCCC------EEEEEeCCc
Confidence 11111 0122322 3678999886442 477787754
No 143
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.38 E-value=0.25 Score=47.68 Aligned_cols=242 Identities=8% Similarity=-0.059 Sum_probs=114.6
Q ss_pred ccEEEEEeCCCeeEEEec--CCCceeeCCCCCCCcccCCCCeeEEEe----CC-EEEEEcccccCCeEEEEECCCCcEee
Q 016416 97 EHWVYLVCDPRGWEAFDP--MKKKWMALPKIPCDECFNHADKESLAV----GS-ELLVFGRELFDFAIWKYSLVFRSWMK 169 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~--~~~~W~~l~~~p~~~~~~~~~~~~~~~----~~-~iy~~Gg~~~~~~~~~yd~~t~~W~~ 169 (390)
...+|+.+....+..||+ .+.+- +..++..... ....+.. ++ .+|+.+ .....+.++|..+.+-..
T Consensus 190 g~~l~v~~~d~~V~v~D~~~~t~~~--~~~i~~g~~p---~~va~sp~~~~dg~~l~v~~--~~~~~v~v~D~~t~~~~~ 262 (543)
T 1nir_A 190 GRYLLVIGRDARIDMIDLWAKEPTK--VAEIKIGIEA---RSVESSKFKGYEDRYTIAGA--YWPPQFAIMDGETLEPKQ 262 (543)
T ss_dssp SCEEEEEETTSEEEEEETTSSSCEE--EEEEECCSEE---EEEEECCSTTCTTTEEEEEE--EESSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECcCCCCcE--EEEEecCCCc---ceEEeCCCcCCCCCEEEEEE--ccCCeEEEEeccccccce
Confidence 456777766688889998 55432 2222221111 1122333 33 455533 234678899988775422
Q ss_pred -cCCC----------CCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCE
Q 016416 170 -CEGM----------NHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGK 236 (390)
Q Consensus 170 -~~~~----------~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~ 236 (390)
++.. +.++.......- +..+|+.... ...++++|..+..-..+..++..+..+..+. -+|+
T Consensus 263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR 336 (543)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred eecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence 2211 111222112222 4555555422 3468889987653211111122233333333 2555
Q ss_pred -EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEec-CCCeEEEEeCCCC-----
Q 016416 237 -FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEY-LTNMVKKYDKLKN----- 308 (390)
Q Consensus 237 -iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg-~~~~v~~yd~~~~----- 308 (390)
+|+.+.. .+.+.++|..+++-...-.... ..++..+.....- ++.+|+.+. ..+.|.+||..+.
T Consensus 337 ~l~va~~~------~~~v~v~D~~tg~l~~~i~~g~--~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 337 YFMTAANN------SNKVAVIDSKDRRLSALVDVGK--TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp EEEEEEGG------GTEEEEEETTTTEEEEEEECSS--SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred EEEEEecC------CCeEEEEECCCCeEEEeeccCC--CCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 5554322 3457779999987543222111 1011111112112 377888775 3578999998772
Q ss_pred ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCC
Q 016416 309 TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 309 ~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~ 361 (390)
.|+.+..++...... ...++..-+..||+-.-..........|.+||.++.
T Consensus 409 ~~~~v~~l~~~g~~~--~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 409 AWKKVAELQGQGGGS--LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp BTSEEEEEECSCSCC--CCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred cCeEEEEEEcCCCCc--eEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 388877665432110 112211123456654311111011335888998873
No 144
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.33 E-value=1.3 Score=40.87 Aligned_cols=186 Identities=8% Similarity=-0.053 Sum_probs=97.2
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCC-EEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee
Q 016416 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGS-ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL 185 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 185 (390)
..++.+|+.+.+...+...+.. .....+..++ .|++.+.......++++|..+++...+..... ......+
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~~-----~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~ 274 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPRH-----NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS---NNTEPTW 274 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSSC-----EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS---CEEEEEE
T ss_pred cEEEEEECCCCcEEEeecCCCc-----ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC---cccceEE
Confidence 4778888887766554332211 0011122244 45544443345679999999988766544321 1112222
Q ss_pred --CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc
Q 016416 186 --GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 186 --~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
+++.+++++... ....++++|..++.-+.+... .......+. -+|+..++++...+ ...++.+|+.+.+
T Consensus 275 spdg~~l~~~s~~~---g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 275 FPDSQNLAFTSDQA---GRPQVYKVNINGGAPQRITWE--GSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGG 346 (415)
T ss_dssp CTTSSEEEEEECTT---SSCEEEEEETTSSCCEECCCS--SSEEEEEEECTTSSEEEEEEECSS---CEEEEEEETTTCC
T ss_pred CCCCCEEEEEECCC---CCcEEEEEECCCCCEEEEecC--CCcccCeEECCCCCEEEEEECcCC---ceEEEEEECCCCC
Confidence 454444433221 134689999988875554321 111112222 25654444443321 3468899999988
Q ss_pred eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC---CeEEEEeCCCCceEEccC
Q 016416 263 WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT---NMVKKYDKLKNTWDVLGR 315 (390)
Q Consensus 263 W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~---~~v~~yd~~~~~W~~v~~ 315 (390)
...+..... . ......-+|+.+++++.. ..++.+|..++....+..
T Consensus 347 ~~~l~~~~~-----~--~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 347 VQVLSSTFL-----D--ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEECCCSSS-----C--EEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred EEEecCCCC-----c--CCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence 876543221 0 001222356655554332 278999988777666543
No 145
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.28 E-value=0.9 Score=41.41 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=74.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++..++.|+. +..+.+||..+.+-...-.- ....-.+++.. ++..++.|+.+ ..+.++|..++.....-.
T Consensus 134 dg~~l~s~~~--d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 134 DGKFLATGAE--DRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp TSSEEEEEET--TSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEcC--CCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCCeeEEEEE
Confidence 5566666653 45788999887764332111 11111122221 45555566543 358889998876543211
Q ss_pred CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC-CCCCcCCCCCEEEE-ECCEEEEEecC
Q 016416 221 MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP-NVNRAAQAPPLVAV-VDNQLYAVEYL 296 (390)
Q Consensus 221 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~~-~~g~l~v~gg~ 296 (390)
.... ....+.. ++++++.|+.++ .+..||+.+..-...-.... ....+......++. -+|++++.|+.
T Consensus 205 ~~~~--v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 205 IEDG--VTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp CSSC--EEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred cCCC--cEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 1111 1122222 567777776543 46778988776432211110 00000101111222 25677777877
Q ss_pred CCeEEEEeCCCC
Q 016416 297 TNMVKKYDKLKN 308 (390)
Q Consensus 297 ~~~v~~yd~~~~ 308 (390)
-+.|..||..+.
T Consensus 277 d~~v~~wd~~~~ 288 (393)
T 1erj_A 277 DRSVKLWNLQNA 288 (393)
T ss_dssp TSEEEEEEC---
T ss_pred CCEEEEEECCCC
Confidence 889999998654
No 146
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.25 E-value=0.74 Score=42.37 Aligned_cols=228 Identities=11% Similarity=0.070 Sum_probs=104.7
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcc
Q 016416 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCL 179 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 179 (390)
++.++....++.+|..+.+...+-.+..+.. ......+..++.+++.|+. +..+.+||..+++-..... .....
T Consensus 118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~--~V~sv~fspdg~~lasgs~--Dg~v~iWd~~~~~~~~~~~--~h~~~ 191 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGE--YISSVAWIKEGNYLAVGTS--SAEVQLWDVQQQKRLRNMT--SHSAR 191 (420)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTC--CEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEEC--CCSSC
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCC--cEEEEEECCCCCEEEEEEC--CCeEEEEEcCCCcEEEEEe--CCCCc
Confidence 4444556788889998877654433322111 0001112235566666653 4578899998876433222 22222
Q ss_pred eeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEe
Q 016416 180 FGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFD 257 (390)
Q Consensus 180 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd 257 (390)
..+...++.+.+.|+.+ ..+..+|..+...... .+........... -+++..+.|+.++ .+..+|
T Consensus 192 v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~~l~s~~~D~------~v~i~~ 258 (420)
T 4gga_A 192 VGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGNDN------LVNVWP 258 (420)
T ss_dssp EEEEEEETTEEEEEETT------SEEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEE
T ss_pred eEEEeeCCCEEEEEeCC------CceeEeeecccceeeE-EecccccceeeeeecCCCCeeeeeeccc------cceEEe
Confidence 33344566777777654 3467777665442211 1111111111121 2455555555432 355566
Q ss_pred CCCCce--EEccCCCCCCCCcCCCCCEEEEE--CCEEEEE-ecC-CCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016416 258 LETRKW--RKIEGMYPNVNRAAQAPPLVAVV--DNQLYAV-EYL-TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 258 ~~~~~W--~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~-gg~-~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
..+.+- ..+...... ......++.. ++.+++. +|. -+.|..||..+++-...-...... ......
T Consensus 259 ~~~~~~~~~~~~~~~~~----~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v-----~~~~~~ 329 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQH----QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV-----CSILWS 329 (420)
T ss_dssp SSCCSSCSCCSEEECCC----SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCE-----EEEEEE
T ss_pred eccccccceeeeeeccc----CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccce-----eeeeec
Confidence 655431 111111110 0000111211 3344444 443 468999999887644322111111 111111
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 332 ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++.+++.+|.... .|.+||..+
T Consensus 330 ~~~~~lv~~sg~~d~-----~I~iwd~~~ 353 (420)
T 4gga_A 330 PHYKELISGHGFAQN-----QLVIWKYPT 353 (420)
T ss_dssp TTTTEEEEEECTTTC-----CEEEEETTT
T ss_pred CCCCeEEEEEecCCC-----EEEEEECCC
Confidence 224566666564321 377888765
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.21 E-value=0.0075 Score=58.91 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=29.1
Q ss_pred CCCCCChHHHHHHHhhhcc-ccchhhhHhhcHHHHHH
Q 016416 45 SLLPGLVDDVALNCLAFAC-TSDYASLLFINKRFHKL 80 (390)
Q Consensus 45 ~~~~~LP~dl~~~iL~rlp-~~~l~~~~~V~k~w~~l 80 (390)
..|..||+|++..||.+|| .+.+.+++.|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 5688999999999999999 88999999999999988
No 148
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.21 E-value=1.5 Score=38.70 Aligned_cols=191 Identities=8% Similarity=-0.018 Sum_probs=89.6
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..|+..+....+..+|..+.+-... +.... .....+. .++..++.++. ...+.+||..+.+....-....
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~----~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~ 116 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNGERLGT--LDGHT----GTIWSIDVDCFTKYCVTGSA--DYSIKLWDVSNGQCVATWKSPV 116 (369)
T ss_dssp CEEEEEESSSCEEEEETTTCCEEEE--ECCCS----SCEEEEEECTTSSEEEEEET--TTEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEEeCCCEEEEEeCCCchhhhh--hhhcC----CcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEeecCC
Confidence 3444444456678888776543221 11111 0111222 24555555543 4578999988876533322221
Q ss_pred CCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCc----EEEcCCCCC-----CCc--CceEEEE--CCEEEEEe
Q 016416 176 PRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGR----WEMLPSMHS-----PRR--LCSGFFM--DGKFYVIG 241 (390)
Q Consensus 176 ~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~~~~~~-----~r~--~~~~~~~--~~~iyv~G 241 (390)
+. ..+.. -++..++.++.+.. .....+.+||..+.. +......+. ... ....+.. +++.+++|
T Consensus 117 ~v--~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 117 PV--KRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp CE--EEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred Ce--EEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 11 11221 24455555543311 123457777765442 221111110 000 2222222 55666666
Q ss_pred cccCCCccCceEEEEeCCC-CceE-EccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEE
Q 016416 242 GMSSPTVSLTCGEEFDLET-RKWR-KIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 242 G~~~~~~~~~~v~~yd~~~-~~W~-~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~ 312 (390)
+.+ ..+..||+.+ ..-. .+..... ....++. -++.+++.++..+.+.+||..+.+-..
T Consensus 194 ~~d------g~i~i~d~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 194 HKD------GKISKYDVSNNYEYVDSIDLHEK-------SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp ETT------SEEEEEETTTTTEEEEEEECCSS-------CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred cCC------CEEEEEECCCCcEeEEEEecCCC-------ceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 543 3578899987 3322 2221111 0011222 266777777777899999998876444
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.19 E-value=1 Score=39.61 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=72.0
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016416 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
..+|+.+ ....+..+|+.+.+....-..+..... ....+..+ +.+|+.+. ....+++||+.+++....-..+.
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGP---GTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSS---CEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEESCC
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCC---ceeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEEEEEccc
Confidence 4455543 567888999988765432222210000 11122233 35777653 34579999998876543222211
Q ss_pred C-----Ccceeeee--eCCEEEEEecc--CCCCC---ccceEEEEECCCCcEEE-cCCCCCCCcCceEEE-ECCEEEEEe
Q 016416 176 P-----RCLFGSGS--LGSIAIIAGGS--DKNGH---VLKSAELYDSTTGRWEM-LPSMHSPRRLCSGFF-MDGKFYVIG 241 (390)
Q Consensus 176 ~-----r~~~~~~~--~~~~lyv~GG~--~~~~~---~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~G 241 (390)
. .....++. -+..+|+.+.. ..... ....+.+||+.+++-.. +.....+....+.+. -+|++|+.+
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~ 165 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 165 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEcc
Confidence 0 00112222 13456665421 00000 12578999988743211 111111222222222 366777742
Q ss_pred cccCCCccCceEEEEeCCCCceE
Q 016416 242 GMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 242 G~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
+ .+.++|+.+.+-.
T Consensus 166 ~---------~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 166 P---------DIYKMDVKTGKYT 179 (349)
T ss_dssp S---------SEEEECTTTCCEE
T ss_pred C---------cEEEEeCCCCcee
Confidence 1 2777888776644
No 150
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.18 E-value=0.24 Score=44.76 Aligned_cols=185 Identities=10% Similarity=0.009 Sum_probs=85.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCC---CCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN---HPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++.++..+. ...+.+||..+++-....... ....-.+++. -+++.++.|+.++ .+.+||..+++-..
T Consensus 105 d~~~l~~s~---dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg------~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 105 EKGILVASD---SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF------SVKVWDLSQKAVLK 175 (357)
T ss_dssp TTEEEEEET---TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEETTTTEEEE
T ss_pred CCCEEEEEC---CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC------eEEEEECCCCcEEE
Confidence 566554433 357888888776532221110 0111112222 2566677776543 37889998876433
Q ss_pred cCCCCCCCcCceEEEE--CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE---CCEEE
Q 016416 218 LPSMHSPRRLCSGFFM--DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV---DNQLY 291 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~g~l~ 291 (390)
. +.........+.. ++ .+++.++.++ .+..||+.+.+-......... ......+.. ++.++
T Consensus 176 ~--~~~h~~~v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~~~~~~~~~~~~~-----~~~v~~v~~sp~~~~~l 242 (357)
T 4g56_B 176 S--YNAHSSEVNCVAACPGKDTIFLSCGEDG------RILLWDTRKPKPATRIDFCAS-----DTIPTSVTWHPEKDDTF 242 (357)
T ss_dssp E--ECCCSSCEEEEEECTTCSSCEEEEETTS------CEEECCTTSSSCBCBCCCTTC-----CSCEEEEEECTTSTTEE
T ss_pred E--EcCCCCCEEEEEEccCCCceeeeeccCC------ceEEEECCCCceeeeeeeccc-----cccccchhhhhcccceE
Confidence 2 1111112222222 33 4666666543 367788877653322111110 011112222 45677
Q ss_pred EEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 292 AVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.|+..+.|.+||..+.+=.. .+.... ..-.+++.. ++++++.|+.++ .|.+||.++
T Consensus 243 a~g~~d~~i~~wd~~~~~~~~--~~~~~~----~~v~~l~~sp~~~~~lasgs~D~------~i~iwd~~~ 301 (357)
T 4g56_B 243 ACGDETGNVSLVNIKNPDSAQ--TSAVHS----QNITGLAYSYHSSPFLASISEDC------TVAVLDADF 301 (357)
T ss_dssp EEEESSSCEEEEESSCGGGCE--EECCCS----SCEEEEEECSSSSCCEEEEETTS------CEEEECTTS
T ss_pred EEeecccceeEEECCCCcEeE--EEeccc----eeEEEEEEcCCCCCEEEEEeCCC------EEEEEECCC
Confidence 888777889999987754211 111111 111222221 346666676553 377888876
No 151
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.17 E-value=0.8 Score=40.61 Aligned_cols=64 Identities=8% Similarity=-0.062 Sum_probs=36.1
Q ss_pred CEEEEEecCCCeEEEEeCCCCceE--EccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016416 288 NQLYAVEYLTNMVKKYDKLKNTWD--VLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 288 g~l~v~gg~~~~v~~yd~~~~~W~--~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
+++++.|+..+.|.+||..+.+-. .+..+...... ..-..+.. -++++++.|+.++ .|.+||+.
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~ 365 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCG--AAIRQTSFSRDSSILIAVCDDA------SIWRWDRL 365 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCC--SCEEEEEECTTSSEEEEEETTS------EEEEEEC-
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcccccC--CceEEEEeCCCCCeEEEEeCCC------EEEEEEec
Confidence 778888888889999999876421 11122211000 01122222 2667777777664 58888875
No 152
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.14 E-value=1.8 Score=39.14 Aligned_cols=182 Identities=10% Similarity=-0.000 Sum_probs=88.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+++.|+. ...+.+||........+..... .-.+++.. ++..++.++.+ ..+.+||..++.....-.
T Consensus 119 ~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 119 DGNSIVTGVE--NGELRLWNKTGALLNVLNFHRA--PIVSVKWNKDGTHIISMDVE------NVTILWNVISGTVMQHFE 188 (425)
T ss_dssp TSSEEEEEET--TSCEEEEETTSCEEEEECCCCS--CEEEEEECTTSSEEEEEETT------CCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeC--CCeEEEEeCCCCeeeeccCCCc--cEEEEEECCCCCEEEEEecC------CeEEEEECCCCcEEEEee
Confidence 4556666653 3568888844433333322111 11122221 45555566543 347889988776543211
Q ss_pred CCCCC--------------cCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEE
Q 016416 221 MHSPR--------------RLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVA 284 (390)
Q Consensus 221 ~~~~r--------------~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~ 284 (390)
.+... ....... -++. +++|+.+ ..+..||+.+.+-.. +..... ....++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------g~i~~~d~~~~~~~~~~~~~~~-------~i~~~~ 254 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK------GAIFVYQITEKTPTGKLIGHHG-------PISVLE 254 (425)
T ss_dssp CC---------------CCCBSCCEEEETTE-EEEECGG------GCEEEEETTCSSCSEEECCCSS-------CEEEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC------CeEEEEEcCCCceeeeeccCCC-------ceEEEE
Confidence 11111 0122223 3444 5555543 347789988764221 111110 111222
Q ss_pred E-ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 285 V-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 285 ~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
. .++++++.++..+.+.+||..+.+-...- .... ..-..+... ++ +++.|+.++ .|.+||..+
T Consensus 255 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~----~~i~~~~~~~~~-~l~~~~~d~------~i~i~d~~~ 319 (425)
T 1r5m_A 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCF--YGHS----QSIVSASWVGDD-KVISCSMDG------SVRLWSLKQ 319 (425)
T ss_dssp EETTTTEEEEEETTSCEEEECSSSBSCSEEE--CCCS----SCEEEEEEETTT-EEEEEETTS------EEEEEETTT
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCccceEe--cCCC----ccEEEEEECCCC-EEEEEeCCC------cEEEEECCC
Confidence 2 25667777777788999998775422211 1111 111223333 45 666666553 588899876
No 153
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.14 E-value=1.2 Score=38.90 Aligned_cols=186 Identities=11% Similarity=0.086 Sum_probs=88.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++.+++.|+ .+..+.+||..+..-...-.............-+++.++.|+.+ ..+.+||..+++-... +
T Consensus 24 ~~~~l~s~~--~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~~~~~~--~ 93 (304)
T 2ynn_A 24 TEPWVLTTL--YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVVD--F 93 (304)
T ss_dssp SSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEEE--E
T ss_pred CCCEEEEEc--CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC------CEEEEEECCCCcEEEE--E
Confidence 444455554 24578888988765422111111111111112245566666643 3588899887764221 1
Q ss_pred CCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCC
Q 016416 222 HSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLT 297 (390)
Q Consensus 222 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~ 297 (390)
.........+.. ++.+.+.|+.++ .+..||..++. .....+... ......++.. ++.+++.|+.-
T Consensus 94 ~~h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~-~~~~~~~~h----~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNW-ALEQTFEGH----EHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTT-EEEEEECCC----CSCEEEEEECTTCTTEEEEEETT
T ss_pred eCCCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCc-chhhhhccc----CCcEEEEEECCCCCCEEEEEeCC
Confidence 111111222222 556666666543 46678876542 111111110 1011122222 45677788888
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe----CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC----GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.|.+||..+..=... +..... .+...+.. ++.+++.|+.++ .|.+||..+
T Consensus 163 ~~v~iwd~~~~~~~~~--~~~~~~----~~v~~~~~~~~~~~~~l~s~s~D~------~i~iWd~~~ 217 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFT--LTTGQE----RGVNYVDYYPLPDKPYMITASDDL------TIKIWDYQT 217 (304)
T ss_dssp SEEEEEETTCSSCSEE--EECCCT----TCEEEEEECCSTTCCEEEEEETTS------EEEEEETTT
T ss_pred CeEEEEECCCCCccce--eccCCc----CcEEEEEEEEcCCCCEEEEEcCCC------eEEEEeCCC
Confidence 8999999865431110 000000 01112222 455667776553 577888876
No 154
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.05 E-value=0.38 Score=42.63 Aligned_cols=227 Identities=11% Similarity=0.075 Sum_probs=108.5
Q ss_pred cEEEEEeC----CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe--C---CEEEEEcccccCCeEEEEECCCCc--
Q 016416 98 HWVYLVCD----PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--G---SELLVFGRELFDFAIWKYSLVFRS-- 166 (390)
Q Consensus 98 ~~l~~~~~----~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~--~---~~iy~~Gg~~~~~~~~~yd~~t~~-- 166 (390)
..+++.++ ...+..||..+.+.......... ..-..+.. + +.+++.|+. ...+.+||..+.+
T Consensus 31 ~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~ 103 (357)
T 3i2n_A 31 AKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA-----KPIKCGTFGATSLQQRYLATGDF--GGNLHIWNLEAPEMP 103 (357)
T ss_dssp SEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES-----SCEEEEECTTCCTTTCCEEEEET--TSCEEEECTTSCSSC
T ss_pred ceEEEecCccCCCcEEEEEeCCCCcccceeeeccc-----CcEEEEEEcCCCCCCceEEEecC--CCeEEEEeCCCCCcc
Confidence 34555442 45678888877665432211110 00112222 2 355555542 3578888887764
Q ss_pred EeecCCCCCCCcceeee-------eeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCC-CcCceEEE----
Q 016416 167 WMKCEGMNHPRCLFGSG-------SLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSP-RRLCSGFF---- 232 (390)
Q Consensus 167 W~~~~~~~~~r~~~~~~-------~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-r~~~~~~~---- 232 (390)
...+....... .++. .-++..++.|+.++ .+.+||..++. ...+...... ......+.
T Consensus 104 ~~~~~~~~~~v--~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 104 VYSVKGHKEII--NAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp SEEECCCSSCE--EEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred EEEEEecccce--EEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 12221111111 1111 12455666666543 48889988765 3333222211 11112222
Q ss_pred --ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE----CCEEEEEecCCCeEEEEeCC
Q 016416 233 --MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV----DNQLYAVEYLTNMVKKYDKL 306 (390)
Q Consensus 233 --~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~g~l~v~gg~~~~v~~yd~~ 306 (390)
-++.+++.|+.+ ..+..||+.+.+-........ ....++.. ++..++.|+..+.+..||..
T Consensus 176 ~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 176 YNQEERVVCAGYDN------GDIKLFDLRNMALRWETNIKN-------GVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp CC-CCCEEEEEETT------SEEEEEETTTTEEEEEEECSS-------CEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred cCCCCCEEEEEccC------CeEEEEECccCceeeecCCCC-------ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 366777766543 357889998876433222111 11123333 56777778778899999876
Q ss_pred CCceEEccCCCc-cccCCCcceeEEEEe-CCE-EEEEcCCCCCCCCeEEEeeecCCC
Q 016416 307 KNTWDVLGRLPV-RADLSNGWGLAFKAC-GNE-LLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 307 ~~~W~~v~~~~~-~~~~~~~~~~~~~~~-~~~-lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+ .+..++. ....+...-.++... ++. +++.|+.++ .|.+||..+
T Consensus 243 ~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~ 291 (357)
T 3i2n_A 243 TQH--PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG------GLHLWKYEY 291 (357)
T ss_dssp EEE--TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS------EEEEEEEEC
T ss_pred CCC--cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC------cEEEeecCC
Confidence 532 1111110 000000111223233 455 777777664 577888765
No 155
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.04 E-value=1.5 Score=37.82 Aligned_cols=210 Identities=8% Similarity=-0.106 Sum_probs=105.7
Q ss_pred EEEEEe-CCCeeEEEecCCCc--eeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCC
Q 016416 99 WVYLVC-DPRGWEAFDPMKKK--WMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGM 173 (390)
Q Consensus 99 ~l~~~~-~~~~~~~~d~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~ 173 (390)
.+++.+ +...+.++|+++.+ |..-..-.. ......+..++.+++.+ ...+..||+ +++ |+.-.
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~-----~~~~~~~~pdG~ilvs~----~~~V~~~d~-~G~~~W~~~~-- 73 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGW-----ECNSVAATKAGEILFSY----SKGAKMITR-DGRELWNIAA-- 73 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTC-----CCCEEEECTTSCEEEEC----BSEEEEECT-TSCEEEEEEC--
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccC-----CCcCeEECCCCCEEEeC----CCCEEEECC-CCCEEEEEcC--
Confidence 344443 46777889987664 654321100 01122334467777732 357899999 554 65432
Q ss_pred CCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCC-cEEEc-C-CCCCC--CcCceEEEECCEEEEEecccCCC
Q 016416 174 NHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEML-P-SMHSP--RRLCSGFFMDGKFYVIGGMSSPT 247 (390)
Q Consensus 174 ~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~-~-~~~~~--r~~~~~~~~~~~iyv~GG~~~~~ 247 (390)
+.....+++. ..++++++..... ...+..+|+... .|+.- . ..+.+ .........+|.+++....
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---- 144 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---- 144 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----
T ss_pred CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----
Confidence 1111122222 3366666664321 235778887433 24432 1 11111 1111223346777665432
Q ss_pred ccCceEEEEeCCCC-ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEcc-CCCccccCC
Q 016416 248 VSLTCGEEFDLETR-KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLG-RLPVRADLS 323 (390)
Q Consensus 248 ~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~-~~~~~~~~~ 323 (390)
...+.+||+.-+ .|+.-....+ .......+|.+++.+...+.|..+|+++++ |+.-. .++..+..
T Consensus 145 --~~~v~~~d~~G~~~w~~~~~~~~--------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~- 213 (276)
T 3no2_A 145 --TSEVREIAPNGQLLNSVKLSGTP--------FSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLF- 213 (276)
T ss_dssp --TTEEEEECTTSCEEEEEECSSCC--------CEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCS-
T ss_pred --CCEEEEECCCCCEEEEEECCCCc--------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccc-
Confidence 245888998732 3653322111 012333468888888777789999999664 77632 22211110
Q ss_pred CcceeEEEEeCCEEEEEc
Q 016416 324 NGWGLAFKACGNELLVVG 341 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~G 341 (390)
.........+|.+|+..
T Consensus 214 -~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 214 -FVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -EEEEEEECTTSCEEEEE
T ss_pred -ccccceEcCCCCEEEEe
Confidence 11122334588999887
No 156
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.03 E-value=1.3 Score=38.41 Aligned_cols=188 Identities=13% Similarity=0.037 Sum_probs=97.5
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
+.+|+.+.. ...+++||+.++ .+..... .. ...+++. -++++|+.... ...+.+||+.+++.+.+...
T Consensus 40 ~~l~~~~~~--~~~i~~~~~~~~-~~~~~~~-~~-~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~~~~~~ 108 (296)
T 3e5z_A 40 SAVIFSDVR--QNRTWAWSDDGQ-LSPEMHP-SH-HQNGHCLNKQGHLIACSHG------LRRLERQREPGGEWESIADS 108 (296)
T ss_dssp TEEEEEEGG--GTEEEEEETTSC-EEEEESS-CS-SEEEEEECTTCCEEEEETT------TTEEEEECSTTCCEEEEECE
T ss_pred CEEEEEeCC--CCEEEEEECCCC-eEEEECC-CC-CcceeeECCCCcEEEEecC------CCeEEEEcCCCCcEEEEeec
Confidence 347776642 357899999987 5554331 11 1123332 26778776431 24589999988887765321
Q ss_pred CCC----CcCceEEEECCEEEEE----ecccC-------CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-
Q 016416 222 HSP----RRLCSGFFMDGKFYVI----GGMSS-------PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV- 285 (390)
Q Consensus 222 ~~~----r~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~- 285 (390)
... +....++.-+|++|+. |.... .......++.||+. ++...+...... ...++.
T Consensus 109 ~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~-------~~gi~~s 180 (296)
T 3e5z_A 109 FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK-------PNGLAFL 180 (296)
T ss_dssp ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS-------EEEEEEC
T ss_pred cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC-------CccEEEC
Confidence 111 1111222237888886 33110 01113478889987 555544321110 012332
Q ss_pred ECCEEEEEecCCCeEEEEeCC-CCce-EEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 286 VDNQLYAVEYLTNMVKKYDKL-KNTW-DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 286 ~~g~l~v~gg~~~~v~~yd~~-~~~W-~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
-+|++++.+...+.|++||.. +++. .....+....... .+. +..-+|+||+..+ . .|.+||++.
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p--~~i-~~d~~G~l~v~~~-~-------~v~~~~~~g 246 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT--DGL-RVDAGGLIWASAG-D-------GVHVLTPDG 246 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC--CSE-EEBTTSCEEEEET-T-------EEEEECTTS
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC--CeE-EECCCCCEEEEcC-C-------eEEEECCCC
Confidence 356666666667899999986 4555 2111110010000 112 2234678888772 1 477888865
No 157
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.00 E-value=2.1 Score=39.11 Aligned_cols=171 Identities=11% Similarity=0.040 Sum_probs=95.7
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC--CCCCCcCceE
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS--MHSPRRLCSG 230 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~ 230 (390)
+.+.++++.......+... .....+++. .++.||+.--. ...+.++++.....+.+.. +..+ .+.
T Consensus 96 ~~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~~~~~p---~gl 164 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVSTGLESP---GGL 164 (386)
T ss_dssp SCEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCEEEEECSSCSCC---CCE
T ss_pred ccceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEeCC------CCcEEEEecCCCCcEEEEeCCCCCc---cEE
Confidence 4677788777665544321 122233333 36899998432 3568999998876655422 2222 223
Q ss_pred EE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCC-CeEEEEeC
Q 016416 231 FF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLT-NMVKKYDK 305 (390)
Q Consensus 231 ~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~-~~v~~yd~ 305 (390)
++ .+++||+.-.. ...|+++++....-..+...... ....+++- ++.||+..... ..|+++|+
T Consensus 165 avd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~~l~------~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 165 AVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLE------KPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp EEETTTTEEEEEETT------TTEEEECBTTSCSCEEEECSSCS------CEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeecCCCC------CCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 33 37899997432 34678888775543333221100 11134444 68999998655 89999998
Q ss_pred CCCceEEccC--CCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 306 LKNTWDVLGR--LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 306 ~~~~W~~v~~--~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
....=..+.. +..+ .|.++-..+++||+.-... ..|+.+|++.
T Consensus 233 dG~~~~~~~~~~~~~P------nGlavd~~~~~lY~aD~~~------~~I~~~d~dG 277 (386)
T 3v65_B 233 DGSGRRIIADTHLFWP------NGLTIDYAGRRMYWVDAKH------HVIERANLDG 277 (386)
T ss_dssp TSCSCEEEECSSCSCE------EEEEEEGGGTEEEEEETTT------TEEEEECTTS
T ss_pred CCCCcEEEEECCCCCe------eeEEEeCCCCEEEEEECCC------CEEEEEeCCC
Confidence 8754444321 2111 1233222478999986533 2577777654
No 158
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.95 E-value=0.84 Score=41.13 Aligned_cols=147 Identities=10% Similarity=-0.033 Sum_probs=78.1
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee-CCE-EEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSI-AIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 232 (390)
..++++|..+++...+...+.. .......- ++. |++... .........++++|..++.++.+.. ..+........
T Consensus 168 ~~l~~~d~~~g~~~~~~~~~~~-~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~ 244 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQDTAW-LGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEF 244 (396)
T ss_dssp EEEEEEETTTCCEEEEEEESSC-EEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEE
T ss_pred ceEEEEECCCCcEEeeccCCcc-cccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCccccceE
Confidence 4788999988877665432111 11111112 243 444432 2111122578999998888777654 21111111222
Q ss_pred E--CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEec-------------
Q 016416 233 M--DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEY------------- 295 (390)
Q Consensus 233 ~--~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg------------- 295 (390)
. +|+ |++.....+ . ....++.+|+.+++...+...+. . . ....- +|+++++.+
T Consensus 245 ~spdg~~l~~~~~~~~-~-~~~~l~~~d~~~g~~~~l~~~~~-----~--~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKG-Q-TDRVIYKANPETLENEEVMVMPP-----C--S-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp ECTTSSCEEEEEEETT-T-CCEEEEEECTTTCCEEEEEECCS-----E--E-EEEECSSSSEEEEEECCC----------
T ss_pred ECCCCCEEEEEecCCC-C-ccceEEEEECCCCCeEEeeeCCC-----C--C-CCccCCCCceEEEecCCcceeecccccc
Confidence 2 555 444432221 1 12348899999888776654332 1 1 23334 677666532
Q ss_pred ---CCCeEEEEeCCCCceEEcc
Q 016416 296 ---LTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 296 ---~~~~v~~yd~~~~~W~~v~ 314 (390)
....++.+|+.+++...+.
T Consensus 315 ~~~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp CCCCCCEEEEEETTTTBCCEEE
T ss_pred ccCCCCcEEEEecccCceEEcc
Confidence 2367999999888766654
No 159
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.95 E-value=3.4 Score=41.37 Aligned_cols=189 Identities=9% Similarity=0.002 Sum_probs=96.0
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcc-cCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCC------CcEe-
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDEC-FNHADKESLAV-GSELLVFGRELFDFAIWKYSLVF------RSWM- 168 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~-~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t------~~W~- 168 (390)
..|++.. ...+..||+.+.++........... ....-..+... ++.|++.. ...-+++||+.+ ..+.
T Consensus 384 g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT---~~~Gl~~~~~~~~~~~~~~~~~~ 459 (758)
T 3ott_A 384 QQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST---CLGGIFVVDKHKLMQSTSGQYIA 459 (758)
T ss_dssp SCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE---SSSCEEEEEHHHHHHCCSSEEEC
T ss_pred CCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE---CCCceEEEccccccccCCcceec
Confidence 4455544 3478899999888866532111000 00010112222 46677632 112467787653 1221
Q ss_pred --e---cCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCC-CcCceEEEE--CCEEEE
Q 016416 169 --K---CEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSP-RRLCSGFFM--DGKFYV 239 (390)
Q Consensus 169 --~---~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~~~--~~~iyv 239 (390)
. ...++.. .-.++.. -++.|++++|... -+.+||+.+++++.+..-... .....++.. +|.|++
T Consensus 460 ~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~~~t~~------Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi 532 (758)
T 3ott_A 460 EQNYSVHNGLSGM-FINQIIPDNEGNVWVLLYNNK------GIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV 532 (758)
T ss_dssp SEEECGGGTCSCS-CEEEEEECTTSCEEEEETTCS------SEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE
T ss_pred ccccccccccccc-eeeeEEEcCCCCEEEEccCCC------CcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE
Confidence 1 1112211 1112222 2578888666432 378999999998876321111 111222333 577776
Q ss_pred EecccCCCccCceEEEEeCCCCceEEcc--CCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEc
Q 016416 240 IGGMSSPTVSLTCGEEFDLETRKWRKIE--GMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 240 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
. .. ..+.+||+.++++.... .++.. ...++..-+|.|++-. .+.+.+||+++.+....
T Consensus 533 g-t~-------~Gl~~~~~~~~~~~~~~~~gl~~~------~i~~i~~~~g~lWi~t--~~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 533 G-FH-------GGVMRINPKDESQQSISFGSFSNN------EILSMTCVKNSIWVST--TNGLWIIDRKTMDARQQ 592 (758)
T ss_dssp E-ET-------TEEEEECC--CCCCBCCCCC---C------CEEEEEEETTEEEEEE--SSCEEEEETTTCCEEEC
T ss_pred E-ec-------CceEEEecCCCceEEecccCCCcc------ceEEEEECCCCEEEEC--CCCeEEEcCCCceeEEe
Confidence 4 21 23788999998876553 22211 1113444578888875 35699999999887654
No 160
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.90 E-value=1.5 Score=39.87 Aligned_cols=152 Identities=14% Similarity=0.063 Sum_probs=77.0
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEE-----cCCCCCCCcCceEEEE--CC-EEEEEecccCCCccCceEEEEe
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-----LPSMHSPRRLCSGFFM--DG-KFYVIGGMSSPTVSLTCGEEFD 257 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-----~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd 257 (390)
++.+++.|+.+ ..+.+||..++.... +..+.........+.. ++ .+++.|+.++ .+..||
T Consensus 93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN------VILVWD 160 (402)
T ss_dssp CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS------CEEEEE
T ss_pred CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC------EEEEEE
Confidence 56677777654 348889988775421 1111111112222222 33 4666666543 477899
Q ss_pred CCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEcc-CCCccccCCCcceeEEEEeCC
Q 016416 258 LETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLG-RLPVRADLSNGWGLAFKACGN 335 (390)
Q Consensus 258 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~-~~~~~~~~~~~~~~~~~~~~~ 335 (390)
+.+.+....-..... ......++. -++.+++.++..+.+.+||+.+.+-...- ....... .......-++
T Consensus 161 ~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 232 (402)
T 2aq5_A 161 VGTGAAVLTLGPDVH----PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR----PVHAVFVSEG 232 (402)
T ss_dssp TTTTEEEEEECTTTC----CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS----CCEEEECSTT
T ss_pred CCCCCccEEEecCCC----CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc----ceEEEEcCCC
Confidence 988765432210110 000111222 26777777877889999999887643321 1111110 0112223467
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 336 ELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++++|.... ....|.+||..+
T Consensus 233 ~~l~~g~~~~---~d~~i~iwd~~~ 254 (402)
T 2aq5_A 233 KILTTGFSRM---SERQVALWDTKH 254 (402)
T ss_dssp EEEEEEECTT---CCEEEEEEETTB
T ss_pred cEEEEeccCC---CCceEEEEcCcc
Confidence 7777772111 113588888876
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.88 E-value=0.77 Score=41.41 Aligned_cols=157 Identities=10% Similarity=-0.040 Sum_probs=76.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF- 232 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~- 232 (390)
..++++|..+++-+.+...+. ........- +++.+++............++.+|..+...+.+............+.
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred ceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 578999999887665543221 111222222 44443333222211124579999998877766644221111111122
Q ss_pred ECCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCc-CCCCCEEEEECCE-EEEEe--------cCCCeEE
Q 016416 233 MDGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRA-AQAPPLVAVVDNQ-LYAVE--------YLTNMVK 301 (390)
Q Consensus 233 ~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~g~-l~v~g--------g~~~~v~ 301 (390)
-+|+ |+.+....+. ....++.+|+.+++-..+...+...... ..... ...-+|+ |++.. .....|+
T Consensus 247 pdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~-~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 247 PDGSALVYVSYLKGS--PDRFIYSADPETLENRQLTSMPACSHLMSNYDGS-LMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp TTSSCEEEEEEETTC--CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS-EEEEEECCC------------CCCCEEE
T ss_pred CCCCEEEEEecCCCC--CcceEEEEecCCCceEEEEcCCCceeeeecCCCC-eEccCCCcceeEeeeccccccCCCCEEE
Confidence 2554 5444332221 1235889999998876654433200000 00011 2233333 33221 2346899
Q ss_pred EEeCCCCceEEccC
Q 016416 302 KYDKLKNTWDVLGR 315 (390)
Q Consensus 302 ~yd~~~~~W~~v~~ 315 (390)
.+|.++++-..+..
T Consensus 324 ~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 324 VFNMKNGTQHRVAR 337 (388)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEeccCCceEEecc
Confidence 99999887766653
No 162
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.84 E-value=1.2 Score=44.40 Aligned_cols=216 Identities=11% Similarity=0.006 Sum_probs=110.6
Q ss_pred CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE-eCCEEEEEcccccCCeEEEEECCCC----cEeec-C-CCCCCC
Q 016416 105 DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA-VGSELLVFGRELFDFAIWKYSLVFR----SWMKC-E-GMNHPR 177 (390)
Q Consensus 105 ~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~iy~~Gg~~~~~~~~~yd~~t~----~W~~~-~-~~~~~r 177 (390)
....+..+++.......+......+ . ...+. .++.||+.-. ....++++++.+. .-..+ . .+..+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p--~---gla~d~~~~~Ly~sD~--~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P- 455 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNV--V---ALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAP- 455 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTC--C---CCEEETTTTEEEECCT--TTTSBEEEESCCCCC-CCCCCBCCSCC--C-
T ss_pred CccceEEEeCCCCcceeeeccCcce--E---EEccccccCeEEEEec--CCCeEEEEecCCCCCCcceEEEEeCCCCCc-
Confidence 3456677787776665443221111 0 01122 2567887532 2346788887651 11111 1 11111
Q ss_pred cceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC--CCCCCcCceEEE--ECCEEEEEecccCCCccCc
Q 016416 178 CLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS--MHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 178 ~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 251 (390)
.++++ .++.||+.-.. ...+.++++....-+.+.. +..|+ ..++ .++.||+.--. ...
T Consensus 456 --~glavD~~~g~LY~tD~~------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~-----~~~ 519 (699)
T 1n7d_A 456 --DGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG-----TPA 519 (699)
T ss_dssp --CCEECCCSSSBCEECCTT------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS-----SSC
T ss_pred --ceEEEEeeCCcEEEEecc------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC-----CCC
Confidence 22332 46889987321 3458899987665444322 22222 2332 36788886311 124
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeE
Q 016416 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLA 329 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~ 329 (390)
.|+++++....-..+..... .....+++ .+++||+.....+.|+++|+....-..+........ ...+
T Consensus 520 ~I~~~~~dG~~~~~l~~~~l------~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~----~P~g 589 (699)
T 1n7d_A 520 KIKKGGLNGVDIYSLVTENI------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA----HPFS 589 (699)
T ss_dssp CEEBCCSSSCCCCEESCSSC------SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCS----SCCC
T ss_pred eEEEEeCCCCCeeEEEeCCC------CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCC----CceE
Confidence 57777765433322221111 01112444 368999999888999999997654444433211111 1123
Q ss_pred EEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 330 FKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 330 ~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++.+++||+.-...+ .|.++++.+
T Consensus 590 lavd~~~lywtd~~~~------~V~~~d~~~ 614 (699)
T 1n7d_A 590 LAVFEDKVFWTDIINE------AIFSANRLT 614 (699)
T ss_dssp CEEETTEEEEECSTTT------CEEEEETTT
T ss_pred eEEECCEEEEEeCCCC------eEEEEEccC
Confidence 4557889999984332 366777654
No 163
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=2.6 Score=39.06 Aligned_cols=199 Identities=8% Similarity=-0.040 Sum_probs=94.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEee--cCCCCCCCcce-eee-eeC---CEEEEEeccCCCCCccceEEEEECCCCc
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMK--CEGMNHPRCLF-GSG-SLG---SIAIIAGGSDKNGHVLKSAELYDSTTGR 214 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~--~~~~~~~r~~~-~~~-~~~---~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (390)
++..++.|+. ...++.++..+..... ...+....... +++ .-+ +++++.|+.+ ..+.+||..++.
T Consensus 160 ~~~~l~~~~~--~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~ 231 (450)
T 2vdu_B 160 DDTTVIIADK--FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCF 231 (450)
T ss_dssp TSSEEEEEET--TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTT
T ss_pred CCCEEEEEeC--CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCc
Confidence 4555555542 4568888876654321 11111111111 122 225 7777777754 348889987765
Q ss_pred EEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC---C---------------C-C
Q 016416 215 WEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP---N---------------V-N 274 (390)
Q Consensus 215 W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~---------------~-~ 274 (390)
....- +.........+.. ++++++.|+.+ ..+..||..+.+....-.... . . .
T Consensus 232 ~~~~~-~~~h~~~v~~~~~sd~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 232 IVDKW-LFGHKHFVSSICCGKDYLLLSAGGD------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp CEEEE-CCCCSSCEEEEEECSTTEEEEEESS------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred eeeee-ecCCCCceEEEEECCCCEEEEEeCC------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 43210 1111111122222 67777777643 357789998876432211100 0 0 0
Q ss_pred CcCCCCCEEEEE-CCEEEEEec-CCCeEEEEeC--CC-CceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCC-CC-
Q 016416 275 RAAQAPPLVAVV-DNQLYAVEY-LTNMVKKYDK--LK-NTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRG-PE- 347 (390)
Q Consensus 275 ~~~~~~~~~~~~-~g~l~v~gg-~~~~v~~yd~--~~-~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~- 347 (390)
........++.. +++.+++++ ..+.|.+||. .+ +.+..+..++... .-..++...+.+++..+... +.
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~-----~v~~~~~~~~~~~v~~~~~~~~~~ 379 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPY-----NVISLSAHNDEFQVTLDNKESSGV 379 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSS-----CEEEEEEETTEEEEEECCTTCCSS
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCC-----ceEEEEecCCcEEEEEecccCCCC
Confidence 000000111221 344444443 6788999998 33 4566655444321 11344455677777665432 21
Q ss_pred -CCeEEEeeecCCC
Q 016416 348 -GENVVLNSWCPKS 360 (390)
Q Consensus 348 -~~~~~i~~y~~~~ 360 (390)
...-.++.++.++
T Consensus 380 ~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 380 QKNFAKFIEYNLNE 393 (450)
T ss_dssp CCCSEEEEEEETTT
T ss_pred CCcceEEEEEEcCC
Confidence 2333566666665
No 164
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=94.75 E-value=2.1 Score=37.90 Aligned_cols=143 Identities=13% Similarity=0.007 Sum_probs=78.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.+|+.+.. ...+++||+.+++...... +. ...+++ .-++++++... ..+.+||+.+++.+.+..
T Consensus 60 ~~~l~~~d~~--~~~i~~~d~~~~~~~~~~~-~~--~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 60 SGTAWWFNIL--ERELHELHLASGRKTVHAL-PF--MGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp TTEEEEEEGG--GTEEEEEETTTTEEEEEEC-SS--CEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEEC
T ss_pred CCEEEEEECC--CCEEEEEECCCCcEEEEEC-CC--cceEEEEeCCCeEEEEEC--------CCEEEEECCCCcEEEEee
Confidence 3677776532 3579999999887654432 21 112222 23678877531 248999999998876643
Q ss_pred CCCC--CcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CC-EEEEEe
Q 016416 221 MHSP--RRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DN-QLYAVE 294 (390)
Q Consensus 221 ~~~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~v~g 294 (390)
.+.. ......+.+ +|++|+.............+++|| +.+...+..-.. ....++.. +| .+|+.+
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~-------~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS-------IPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES-------SEEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc-------ccCCeEEcCCCCEEEEEE
Confidence 3221 111222223 678877432111111235688888 466554421100 00123322 44 688887
Q ss_pred cCCCeEEEEeCC
Q 016416 295 YLTNMVKKYDKL 306 (390)
Q Consensus 295 g~~~~v~~yd~~ 306 (390)
...+.|++||..
T Consensus 198 ~~~~~I~~~d~~ 209 (326)
T 2ghs_A 198 TKVNRLMRVPLD 209 (326)
T ss_dssp TTTCEEEEEEBC
T ss_pred CCCCEEEEEEcc
Confidence 667899999975
No 165
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=94.75 E-value=0.035 Score=50.82 Aligned_cols=180 Identities=18% Similarity=0.141 Sum_probs=76.8
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCC--cE
Q 016416 140 AVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG--RW 215 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W 215 (390)
..++.||+.+. ...++.+|..+++ |+.-. . + .....+..++.+|+.++.+ ..+..+|..++ .|
T Consensus 7 v~~~~v~~gs~---dg~v~a~d~~tG~~~W~~~~--~-~-~~s~p~~~~g~~~v~~s~d------g~l~a~d~~tG~~~w 73 (369)
T 2hz6_A 7 LPETLLFVSTL---DGSLHAVSKRTGSIKWTLKE--D-P-VLQVPTHVEEPAFLPDPND------GSLYTLGSKNNEGLT 73 (369)
T ss_dssp -CTTEEEEEET---TSEEEEEETTTCCEEEEEEC--C-C-SCCCC-----CCEEECTTT------CCEEEC-----CCSE
T ss_pred eeCCEEEEEcC---CCEEEEEECCCCCEEEEecC--C-C-ceecceEcCCCEEEEeCCC------CEEEEEECCCCceee
Confidence 34667776543 3478999988875 75532 1 1 1112233466677776433 34888998766 46
Q ss_pred EEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEE
Q 016416 216 EMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYA 292 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 292 (390)
+.-...+... ..+.+. .++.||+ |+. ...++.+|+.+++ |+.-.... .+ .+..++.+|+
T Consensus 74 ~~~~~~~~~~-~~sp~~~~~~~v~~-g~~------dg~v~a~D~~tG~~~w~~~~~~~------~~----~~p~~~~v~~ 135 (369)
T 2hz6_A 74 KLPFTIPELV-QASPCRSSDGILYM-GKK------QDIWYVIDLLTGEKQQTLSSAFA------DS----LSPSTSLLYL 135 (369)
T ss_dssp ECSCCHHHHH-TTCSCC-----CCC-CEE------EEEEEEECCC--------------------------------EEE
T ss_pred eeeccCcccc-ccCceEecCCEEEE-EeC------CCEEEEEECCCCcEEEEecCCCc------cc----ccccCCEEEE
Confidence 5421111000 111111 4556654 322 2357889988764 65322110 01 1113445554
Q ss_pred EecCCCeEEEEeCCCCc--eEEcc-CCCccccCCCcceeEEE---EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCC
Q 016416 293 VEYLTNMVKKYDKLKNT--WDVLG-RLPVRADLSNGWGLAFK---ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGT 366 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~~--W~~v~-~~~~~~~~~~~~~~~~~---~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~ 366 (390)
+...+.+..||+.+++ |+.-. .... .++. ..++.+|+... ++ .++++|..+ +.
T Consensus 136 -~~~dg~v~a~d~~tG~~~W~~~~~~~~~---------~~~~~~~~~~~~v~~~~~-dg------~v~a~d~~t----G~ 194 (369)
T 2hz6_A 136 -GRTEYTITMYDTKTRELRWNATYFDYAA---------SLPEDDVDYKMSHFVSNG-DG------LVVTVDSES----GD 194 (369)
T ss_dssp -EEEEEEEECCCSSSSSCCCEEEEEEECC---------BCCCCCTTCCCCEEEEET-SC------EEEEECTTT----CC
T ss_pred -EecCCEEEEEECCCCCEEEeEecccccC---------ccccCCccccceEEEECC-CC------EEEEEECCC----Cc
Confidence 4444678999988764 87521 1100 0000 12366666432 21 588999887 45
Q ss_pred CceEE
Q 016416 367 LDWKV 371 (390)
Q Consensus 367 ~~W~~ 371 (390)
..|+.
T Consensus 195 ~~W~~ 199 (369)
T 2hz6_A 195 VLWIQ 199 (369)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 56874
No 166
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=94.75 E-value=1.8 Score=38.97 Aligned_cols=198 Identities=9% Similarity=-0.058 Sum_probs=92.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCc-------EeecCCCCCCCcceeeee-eC----C---EEEEEeccCCCCCccceEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRS-------WMKCEGMNHPRCLFGSGS-LG----S---IAIIAGGSDKNGHVLKSAE 206 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~-------W~~~~~~~~~r~~~~~~~-~~----~---~lyv~GG~~~~~~~~~~~~ 206 (390)
...+++.|+. +..+.+||..+.. -..+.....+ -..+.. -+ + .+++.|+.++ .+.
T Consensus 25 ~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~g~~~~~l~s~~~dg------~i~ 94 (397)
T 1sq9_A 25 CNSFTVSCSG--DGYLKVWDNKLLDNENPKDKSYSHFVHKSG--LHHVDVLQAIERDAFELCLVATTSFSG------DLL 94 (397)
T ss_dssp CSSEEEEEET--TSEEEEEESBCCTTCCGGGGEEEEECCTTC--EEEEEEEEEEETTTEEEEEEEEEETTS------CEE
T ss_pred cCCeEEEEcC--CCEEEEEECCCcccccCCCcceEEecCCCc--EEEEEEecccccCCccccEEEEEcCCC------CEE
Confidence 3355555543 4578889988765 2222211111 112222 23 5 7777776543 378
Q ss_pred EEECCCCc------EEEcCCCCCC--CcC-ceEEEE-----CCEE-EEEecccCCCccCceEEEEeCCC------Cc---
Q 016416 207 LYDSTTGR------WEMLPSMHSP--RRL-CSGFFM-----DGKF-YVIGGMSSPTVSLTCGEEFDLET------RK--- 262 (390)
Q Consensus 207 ~yd~~t~~------W~~~~~~~~~--r~~-~~~~~~-----~~~i-yv~GG~~~~~~~~~~v~~yd~~~------~~--- 262 (390)
+||..++. +..+...+.. ... .+++.. ++.. ++.|+.++ .+..||+.+ .+
T Consensus 95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG------TTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS------CEEEEEEESSSSHHHHTTTC
T ss_pred EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC------cEEEEeCCccccccccceee
Confidence 88887776 6665443211 111 222233 4565 66666542 356677665 21
Q ss_pred eEEccCCCC---CCCCcCCCCCEEEEE-CCEEEEEecCCCeEEEEeCCCCceEEccCC-CccccCCCcceeEEEE-eCCE
Q 016416 263 WRKIEGMYP---NVNRAAQAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKNTWDVLGRL-PVRADLSNGWGLAFKA-CGNE 336 (390)
Q Consensus 263 W~~~~~~~~---~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~~~~-~~~~ 336 (390)
|.....+.. ....+......++.. ++ +++.|+..+.+.+||..+.+-...-.. ...... ...-.++.. -+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~-~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN-SNSIRSVKFSPQGS 246 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC-CCCEEEEEECSSTT
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc-CCccceEEECCCCC
Confidence 111001100 000001111233333 46 777787788999999987754332111 000000 001122222 2566
Q ss_pred EEEEcCCCCCCCCeEEEeeecCCC
Q 016416 337 LLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 337 lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++.|+.++ ....|.+||..+
T Consensus 247 ~l~~~~~d~---~~g~i~i~d~~~ 267 (397)
T 1sq9_A 247 LLAIAHDSN---SFGCITLYETEF 267 (397)
T ss_dssp EEEEEEEET---TEEEEEEEETTT
T ss_pred EEEEEecCC---CCceEEEEECCC
Confidence 777776441 113688999876
No 167
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=94.73 E-value=2.3 Score=38.28 Aligned_cols=209 Identities=5% Similarity=-0.125 Sum_probs=101.4
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
.++.+.+++.......+.++|+.+.+-......... -.+++. -++++++.++. ..+.+++..++......
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~--V~~v~fspdg~~l~s~s~-------~~~~~~~~~~~~~~~~~ 213 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGE--VKDLHFSTDGKVVAYITG-------SSLEVISTVTGSCIARK 213 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSC--CCEEEECTTSSEEEEECS-------SCEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCc--eEEEEEccCCceEEeccc-------eeEEEEEeccCcceeee
Confidence 355555444333456789999988765433221111 112222 25666666542 23677887777654322
Q ss_pred CCCCCCcCceEE--EECCEEEEEecccCCCccCceEEEEeCCCCceEEccC--CCCCCCCcCCCCCEE-EEECCEEEEEe
Q 016416 220 SMHSPRRLCSGF--FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG--MYPNVNRAAQAPPLV-AVVDNQLYAVE 294 (390)
Q Consensus 220 ~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~-~~~~g~l~v~g 294 (390)
...........+ .-+++.++.++.++.. ...+..+|........... +.... ....++ ..-+|++++.|
T Consensus 214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~----~~V~~~~~Spdg~~lasg 287 (365)
T 4h5i_A 214 TDFDKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRF----KGITSMDVDMKGELAVLA 287 (365)
T ss_dssp CCCCTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSC----SCEEEEEECTTSCEEEEE
T ss_pred ecCCCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCC----CCeEeEEECCCCCceEEE
Confidence 222222222222 3478888887765432 2345667776665543221 11100 000012 22378888888
Q ss_pred cCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016416 295 YLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 295 g~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
+.-+.|.+||..+.+- +..+... +...-.+++. -++++++.|+.++ .|.+||...+.-..+..|+.+.
T Consensus 288 s~D~~V~iwd~~~~~~--~~~~~~g---H~~~V~~v~fSpdg~~laS~S~D~------tvrvw~ip~~~~~~~s~~~~l~ 356 (365)
T 4h5i_A 288 SNDNSIALVKLKDLSM--SKIFKQA---HSFAITEVTISPDSTYVASVSAAN------TIHIIKLPLNYANYTSMKQKIS 356 (365)
T ss_dssp ETTSCEEEEETTTTEE--EEEETTS---SSSCEEEEEECTTSCEEEEEETTS------EEEEEECCTTTTC---------
T ss_pred cCCCEEEEEECCCCcE--EEEecCc---ccCCEEEEEECCCCCEEEEEeCCC------eEEEEEcCCCCcCccCccccce
Confidence 8888999999987652 2221111 1111122222 2678888887664 5888987553333334566554
Q ss_pred cc
Q 016416 374 EK 375 (390)
Q Consensus 374 ~~ 375 (390)
.+
T Consensus 357 kl 358 (365)
T 4h5i_A 357 KL 358 (365)
T ss_dssp --
T ss_pred ee
Confidence 43
No 168
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.71 E-value=2 Score=37.56 Aligned_cols=190 Identities=9% Similarity=-0.047 Sum_probs=99.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.||+... ....++++|+....-... ..+ ...++++.. ++++|+...... ...+..||+.+++.+.+..
T Consensus 42 ~g~lyv~d~--~~~~I~~~d~~g~~~~~~-~~~--~~p~gia~~~dG~l~vad~~~~----~~~v~~~d~~~g~~~~~~~ 112 (306)
T 2p4o_A 42 DGTIFVTNH--EVGEIVSITPDGNQQIHA-TVE--GKVSGLAFTSNGDLVATGWNAD----SIPVVSLVKSDGTVETLLT 112 (306)
T ss_dssp TSCEEEEET--TTTEEEEECTTCCEEEEE-ECS--SEEEEEEECTTSCEEEEEECTT----SCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEeC--CCCeEEEECCCCceEEEE-eCC--CCceeEEEcCCCcEEEEeccCC----cceEEEEcCCCCeEEEEEe
Confidence 566777642 235789999876432221 111 122333332 577888753211 1247889988888776655
Q ss_pred CCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc---eEEccCCC--CCCCCcCCCCCEEEEECCEEEEEe
Q 016416 221 MHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK---WRKIEGMY--PNVNRAAQAPPLVAVVDNQLYAVE 294 (390)
Q Consensus 221 ~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~--~~~~~~~~~~~~~~~~~g~l~v~g 294 (390)
.+..+.....+. .++.+|+.-. ....++++|+.+.. |..-..+. ..... -.....+..-++.||+..
T Consensus 113 ~~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~-~~~pngis~dg~~lyv~d 185 (306)
T 2p4o_A 113 LPDAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESV-FPAANGLKRFGNFLYVSN 185 (306)
T ss_dssp CTTCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCC-SCSEEEEEEETTEEEEEE
T ss_pred CCCccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEECCccccccccCC-CCcCCCcCcCCCEEEEEe
Confidence 444333323332 3556777531 13468899987642 22111110 00000 001112433456899998
Q ss_pred cCCCeEEEEeCCC-Cce---EEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 295 YLTNMVKKYDKLK-NTW---DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 295 g~~~~v~~yd~~~-~~W---~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...+.|++||... .+. ..+..+..+ -+.+ +.-+|+||+.....+ .|.+||++.
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P------~gi~-vd~dG~l~va~~~~~------~V~~~~~~G 242 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNI------DDFA-FDVEGNLYGATHIYN------SVVRIAPDR 242 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCCC------SSEE-EBTTCCEEEECBTTC------CEEEECTTC
T ss_pred CCCCEEEEEEeCCCCCCCccEEEeccCCC------CCeE-ECCCCCEEEEeCCCC------eEEEECCCC
Confidence 8888999999875 221 222222111 1122 233678888865321 377888864
No 169
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=94.69 E-value=1.9 Score=37.90 Aligned_cols=233 Identities=10% Similarity=-0.025 Sum_probs=116.6
Q ss_pred EEEEEeCCCeeEEEecCCCceeeCCCCCCC------------c--ccCCCCeeEEEe--CCEEEEEcccccCCeEEEEEC
Q 016416 99 WVYLVCDPRGWEAFDPMKKKWMALPKIPCD------------E--CFNHADKESLAV--GSELLVFGRELFDFAIWKYSL 162 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~------------~--~~~~~~~~~~~~--~~~iy~~Gg~~~~~~~~~yd~ 162 (390)
.+|+-.....++.||+...++..+...... . ........+... ++.||+.... ..+.++|+
T Consensus 32 ~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~---~~i~~~d~ 108 (322)
T 2fp8_A 32 GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY---YHLSVVGS 108 (322)
T ss_dssp SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT---TEEEEECT
T ss_pred EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC---CCEEEEeC
Confidence 366544566788899987666543210000 0 000011122233 5788887432 34788998
Q ss_pred CCCcEeecCCCCCC---Ccceeeeee--CCEEEEEeccCCC-----------CCccceEEEEECCCCcEEEcC-CCCCCC
Q 016416 163 VFRSWMKCEGMNHP---RCLFGSGSL--GSIAIIAGGSDKN-----------GHVLKSAELYDSTTGRWEMLP-SMHSPR 225 (390)
Q Consensus 163 ~t~~W~~~~~~~~~---r~~~~~~~~--~~~lyv~GG~~~~-----------~~~~~~~~~yd~~t~~W~~~~-~~~~~r 225 (390)
.++..+.+...... .....+++- ++.+|+.-..... ......+++||+.++..+.+. .+..+
T Consensus 109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p- 187 (322)
T 2fp8_A 109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP- 187 (322)
T ss_dssp TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC-
T ss_pred CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccC-
Confidence 87655444321110 111233332 5788887432100 011356899999888765432 11111
Q ss_pred cCceEEEE-CC-EEEEEecccCCCccCceEEEEeCCCC---ceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecC---
Q 016416 226 RLCSGFFM-DG-KFYVIGGMSSPTVSLTCGEEFDLETR---KWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYL--- 296 (390)
Q Consensus 226 ~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~--- 296 (390)
...+.- ++ .||+.-.. ...|.+||+.+. ....+..++. + ..+++ -+|.||+....
T Consensus 188 --~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g-----P---~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 188 --GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN-----P---GNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp --CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS-----E---EEEEECTTSCEEEEEEEETT
T ss_pred --cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC-----C---CCeEECCCCCEEEEecCccc
Confidence 222332 34 58886321 356888998753 3433322211 1 01322 35788888643
Q ss_pred -------CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 297 -------TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 -------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.|.+||+....-..+.. +...... ....++..+++|||.+... ..|.+|++..
T Consensus 252 ~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~~~~--~~~~~~~~~g~L~v~~~~~------~~i~~~~~~~ 313 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDEFGNILEVIPL-PPPFAGE--HFEQIQEHDGLLYIGTLFH------GSVGILVYDK 313 (322)
T ss_dssp SSTTSCEEEEEEEECTTSCEEEEEEC-CTTTTTS--CCCEEEEETTEEEEECSSC------SEEEEEEC--
T ss_pred ccccCCCccEEEEECCCCCEEEEEEC-CCCCccc--cceEEEEeCCEEEEeecCC------CceEEEeccc
Confidence 4679999997554444432 2211010 1133445689999886533 2477888765
No 170
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=94.68 E-value=0.96 Score=41.20 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=75.8
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
+++.++.|+.++ .+.+||..+++-... +.........+.. ++...+.|+.+ ..+..||+.+.+.
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~~~ 199 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQC 199 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEE
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCCee
Confidence 566677776543 488999988765332 1111111222222 55555555543 3577889988765
Q ss_pred EEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEE-ccCCCccccCCCcceeEEEE-eCCEEEE
Q 016416 264 RKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDV-LGRLPVRADLSNGWGLAFKA-CGNELLV 339 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~-v~~~~~~~~~~~~~~~~~~~-~~~~lyv 339 (390)
...-..... ...++.. ++++++.|+..+.+..||..+..-.. +.........+...-.++.. -+++.++
T Consensus 200 ~~~~~~~~~-------v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 200 SLTLSIEDG-------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp EEEEECSSC-------EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred EEEEEcCCC-------cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 432221110 1112222 67888888888899999998876432 21110000111111122222 2566777
Q ss_pred EcCCCCCCCCeEEEeeecCCC
Q 016416 340 VGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 340 ~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.|+.++ .|.+||..+
T Consensus 273 s~s~d~------~v~~wd~~~ 287 (393)
T 1erj_A 273 SGSLDR------SVKLWNLQN 287 (393)
T ss_dssp EEETTS------EEEEEEC--
T ss_pred EEeCCC------EEEEEECCC
Confidence 777653 577888765
No 171
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.68 E-value=3.8 Score=40.64 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=110.0
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCccc----CCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--E
Q 016416 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECF----NHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--W 167 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~----~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W 167 (390)
.+..+|+......++++|..+. .|..-...+..... .......+..++.||+... ...++.+|..|++ |
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---dg~l~AlDa~TG~~~W 145 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---DGRLEAIDAKTGQRAW 145 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---CCEEEEEECCCCCEee
Confidence 4678888766677899998855 58764333211100 0011223456788887653 3578999998875 7
Q ss_pred eecCC-CCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEc--CCCCCCC---------------
Q 016416 168 MKCEG-MNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEML--PSMHSPR--------------- 225 (390)
Q Consensus 168 ~~~~~-~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~--~~~~~~r--------------- 225 (390)
+.-.. -+. .....+.++.++.+|+..+.... .....+..||..|++ |+.- +.-+...
T Consensus 146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eecCcCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 65432 111 11122334568888874332111 124579999999986 8753 1111100
Q ss_pred -------c---CceEEEE---CCEEEEEeccc------------CCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCC
Q 016416 226 -------R---LCSGFFM---DGKFYVIGGMS------------SPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQ 278 (390)
Q Consensus 226 -------~---~~~~~~~---~~~iyv~GG~~------------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~ 278 (390)
. ......+ ++.||+-.+.. +...+...+..+|+.|++ |+.-......... ..
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~-~~ 303 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY-TA 303 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC-CC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc-cC
Confidence 0 0012233 56777754432 112234579999999875 7643211110000 00
Q ss_pred CCCEEE---EECCE---EEEEecCCCeEEEEeCCCCc
Q 016416 279 APPLVA---VVDNQ---LYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 279 ~~~~~~---~~~g~---l~v~gg~~~~v~~yd~~~~~ 309 (390)
..+.+. ..+|+ +++++...+.++++|..+++
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 011111 23554 55566666778888877764
No 172
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.68 E-value=2.6 Score=38.75 Aligned_cols=150 Identities=10% Similarity=0.004 Sum_probs=84.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~ 220 (390)
++.||+... ....+.++|+.++.-..+..... ....+...-++.+|+..... ...++++|+.++. ...+..
T Consensus 141 ~g~lyv~d~--~~~~I~~id~~~g~~~~~~~~~~-~~~ia~~~~g~~l~~~d~~~-----~~~I~~~d~~~~~~~~~~g~ 212 (409)
T 3hrp_A 141 NNTVLAYQR--DDPRVRLISVDDNKVTTVHPGFK-GGKPAVTKDKQRVYSIGWEG-----THTVYVYMKASGWAPTRIGQ 212 (409)
T ss_dssp TTEEEEEET--TTTEEEEEETTTTEEEEEEETCC-BCBCEECTTSSEEEEEBSST-----TCEEEEEEGGGTTCEEEEEE
T ss_pred CCCEEEEec--CCCcEEEEECCCCEEEEeeccCC-CCceeEecCCCcEEEEecCC-----CceEEEEEcCCCceeEEeee
Confidence 578888764 34678999999877655432211 11122222245677764321 1268899987553 233311
Q ss_pred CC--CCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC-C-EEEEE--CCEEEE
Q 016416 221 MH--SPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP-P-LVAVV--DNQLYA 292 (390)
Q Consensus 221 ~~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~-~-~~~~~--~g~l~v 292 (390)
.. .....+..++. ++.||+... ...+++||+.+.....+........ .... . .+++. ++.||+
T Consensus 213 ~~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~--~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 213 LGSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGS--LGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp CCTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSC--CCCSSCCEEEEETTTTEEEE
T ss_pred ccchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCC--CCCCccccEEEeCCCCEEEE
Confidence 11 11122233333 689999421 2368899999887655422111100 1111 1 45554 589999
Q ss_pred EecCCCeEEEEeCCCC
Q 016416 293 VEYLTNMVKKYDKLKN 308 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~ 308 (390)
.+...+.|++||+...
T Consensus 284 ~d~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE 299 (409)
T ss_dssp EETTTTEEEEECTTCC
T ss_pred EeCCCCEEEEEecCCC
Confidence 9988889999998765
No 173
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.64 E-value=0.42 Score=42.85 Aligned_cols=147 Identities=13% Similarity=0.056 Sum_probs=66.9
Q ss_pred eEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEEC
Q 016416 156 AIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMD 234 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 234 (390)
.++.+|+.+++.+.+.........+.+..- +..||+.+..... ...-.++.+|..++..+.+...+........+..+
T Consensus 30 ~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~-~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~d 108 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKD-QAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTN 108 (361)
T ss_dssp EEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSST-TCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEEC
T ss_pred EEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCC-CCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEEC
Confidence 456668888887665443111111111122 3457776543211 11223455566667777665444322222222236
Q ss_pred CE-EEEEecccCCCccCceEEEEeCCCCc-eEEccC-------CCCCCCCcCCCCCEEEE-ECC-EEEEEecCCCeEEEE
Q 016416 235 GK-FYVIGGMSSPTVSLTCGEEFDLETRK-WRKIEG-------MYPNVNRAAQAPPLVAV-VDN-QLYAVEYLTNMVKKY 303 (390)
Q Consensus 235 ~~-iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~-------~~~~~~~~~~~~~~~~~-~~g-~l~v~gg~~~~v~~y 303 (390)
++ ||+.. .. ...+..||+.++. ...+.. -+..........+.++. -+| .+|+.+...+.+.+|
T Consensus 109 g~~l~~~~-~~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~ 182 (361)
T 3scy_A 109 GKNIVTAN-YS-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF 182 (361)
T ss_dssp SSEEEEEE-TT-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEE-CC-----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence 65 55543 22 2356778876432 111110 00000000001112222 245 477777667888888
Q ss_pred eCCCCc
Q 016416 304 DKLKNT 309 (390)
Q Consensus 304 d~~~~~ 309 (390)
+...+.
T Consensus 183 ~~~~~~ 188 (361)
T 3scy_A 183 NINPNA 188 (361)
T ss_dssp EECTTC
T ss_pred EEcCCC
Confidence 776544
No 174
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.57 E-value=0.6 Score=42.97 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=74.3
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE
Q 016416 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 231 (390)
.+.+++||..+++...+-.+........++.+ ++..++.|+.++ .+.++|..+++-... +........+.
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~--~~~h~~~v~~~ 195 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRN--MTSHSARVGSL 195 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEE--ECCCSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEE--EeCCCCceEEE
Confidence 46899999999887655443332222222222 567777777553 488999988764332 12222223344
Q ss_pred EECCEEEEEecccCCCccCceEEEEeCCCCceEE--ccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016416 232 FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK--IEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 232 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
..++.+.+.|+.+. .+..+|..+..... +....... .......++..++.++.-+.+.+||..+.+
T Consensus 196 s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~h~~~~------~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 196 SWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGHSQEV------CGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp EEETTEEEEEETTS------EEEEEETTSSSCEEEEEECCSSCE------EEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred eeCCCEEEEEeCCC------ceeEeeecccceeeEEecccccce------eeeeecCCCCeeeeeeccccceEEeecccc
Confidence 56777777766542 45667766543321 11111100 001112245666677777788889877653
No 175
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=94.55 E-value=2.6 Score=38.11 Aligned_cols=193 Identities=14% Similarity=0.096 Sum_probs=91.2
Q ss_pred CCEEEEEcccccCCeEEEEECCC----C-cEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc
Q 016416 142 GSELLVFGRELFDFAIWKYSLVF----R-SWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR 214 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t----~-~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (390)
++.+++.|+. ...+.+||..+ . .-..+.....+ -.++... ++.+++.|+.++ .+.+||..++.
T Consensus 78 ~~~~l~~~~~--dg~v~vw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~ 147 (416)
T 2pm9_A 78 NNKIIAGALD--NGSLELYSTNEANNAINSMARFSNHSSS--VKTVKFNAKQDNVLASGGNNG------EIFIWDMNKCT 147 (416)
T ss_dssp SSSCEEEEES--SSCEEEECCSSTTSCCCEEEECCCSSSC--CCEEEECSSSTTBEEEECSSS------CEEBCBTTTTS
T ss_pred CCCeEEEEcc--CCeEEEeecccccccccchhhccCCccc--eEEEEEcCCCCCEEEEEcCCC------eEEEEECCCCc
Confidence 4555555543 35788888876 1 22222211111 1122222 256777776543 48889988765
Q ss_pred ------EEE-cCCCCCCCcCceEEEE--C-CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE
Q 016416 215 ------WEM-LPSMHSPRRLCSGFFM--D-GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA 284 (390)
Q Consensus 215 ------W~~-~~~~~~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 284 (390)
-.. +............+.. + +.+++.|+.++ .+..||+.+.+-...-........+......++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 221 (416)
T 2pm9_A 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN------FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE 221 (416)
T ss_dssp SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEE
T ss_pred cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEEEECCCCCcceEEeccccccccCCceEEEE
Confidence 111 1111111112222322 3 56777766542 477899988765433222210000000011222
Q ss_pred EE-CC-EEEEEecCCC---eEEEEeCCCCceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeec
Q 016416 285 VV-DN-QLYAVEYLTN---MVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 285 ~~-~g-~l~v~gg~~~---~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~ 357 (390)
.. ++ .+++.++..+ .+.+||..+..- .+..+.. .+...-.++... ++.+++.|+.++ .|.+||
T Consensus 222 ~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~---~~~~~v~~~~~s~~~~~~l~s~~~dg------~v~~wd 291 (416)
T 2pm9_A 222 WHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQ---GHQKGILSLDWCHQDEHLLLSSGRDN------TVLLWN 291 (416)
T ss_dssp ECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCS---CCSSCEEEEEECSSCSSCEEEEESSS------EEEEEC
T ss_pred ECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeec---CccCceeEEEeCCCCCCeEEEEeCCC------CEEEee
Confidence 22 23 4666666555 899999887531 1111110 000111222222 677777777653 477888
Q ss_pred CCC
Q 016416 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
..+
T Consensus 292 ~~~ 294 (416)
T 2pm9_A 292 PES 294 (416)
T ss_dssp SSS
T ss_pred CCC
Confidence 866
No 176
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.88 Score=40.31 Aligned_cols=193 Identities=10% Similarity=-0.001 Sum_probs=89.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce-eeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF-GSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+++.|+. ...+.+||..+.+-... +....... +++.. ++..++.|+.+ ..+.+||..+++....-
T Consensus 43 ~~~~l~~~~~--dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 43 EGDLLFSCSK--DSSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSNGQCVATW 112 (369)
T ss_dssp TSCEEEEEES--SSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------TEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEeC--CCEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEe
Confidence 4445555542 35788899877654322 11111111 22222 45566666643 35889999887654432
Q ss_pred CCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc----eEEccCCCCCC-CCcCC-CCCEEE--EECCEE
Q 016416 220 SMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK----WRKIEGMYPNV-NRAAQ-APPLVA--VVDNQL 290 (390)
Q Consensus 220 ~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~~-~~~~~-~~~~~~--~~~g~l 290 (390)
....+ -..... -+++.++.++.+.. .....+..||+.+.. +......+... ..+.. ...... ..+++.
T Consensus 113 ~~~~~--v~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (369)
T 3zwl_B 113 KSPVP--VKRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY 189 (369)
T ss_dssp ECSSC--EEEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE
T ss_pred ecCCC--eEEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE
Confidence 21111 111222 25555555544311 112456667665442 22111111100 00000 011111 125667
Q ss_pred EEEecCCCeEEEEeCCC-CceEE-ccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 291 YAVEYLTNMVKKYDKLK-NTWDV-LGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 291 ~v~gg~~~~v~~yd~~~-~~W~~-v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++++..+.|.+||..+ .+-.. +...... -..+.. -++.+++.|+.++ .|.+||..+
T Consensus 190 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~d~------~i~v~d~~~ 249 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKS-------ISDMQFSPDLTYFITSSRDT------NSFLVDVST 249 (369)
T ss_dssp EEEEETTSEEEEEETTTTTEEEEEEECCSSC-------EEEEEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred EEEEcCCCEEEEEECCCCcEeEEEEecCCCc-------eeEEEECCCCCEEEEecCCc------eEEEEECCC
Confidence 77777778999999987 33222 2111111 112222 2566666666543 477888766
No 177
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.44 E-value=2.2 Score=36.74 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=98.0
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc-EeecCCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS-WMKCEGMNHP 176 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~~~~~~ 176 (390)
..++..+....+..+|..+..-...-..... ......+..++.+++.|+. ...+.+|+..... ...+..+...
T Consensus 30 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~--dg~i~~~~~~~~~~~~~~~~~~~~ 103 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQG----FLNSVCYDSEKELLLFGGK--DTMINGVPLFATSGEDPLYTLIGH 103 (313)
T ss_dssp TEEEEEETTSEEEEEEESSSEEEEEEEECSS----CEEEEEEETTTTEEEEEET--TSCEEEEETTCCTTSCC-CEECCC
T ss_pred CEEEEEEcCCcEEEEECCCCEEEEEeecCCc----cEEEEEECCCCCEEEEecC--CCeEEEEEeeecCCCCcccchhhc
Confidence 3444444456777888766543221111110 0001122235555565553 3456677765432 1111112212
Q ss_pred CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-E-CCEEEEEecccCCCccCceEE
Q 016416 177 RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-M-DGKFYVIGGMSSPTVSLTCGE 254 (390)
Q Consensus 177 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~v~ 254 (390)
.........++..++.|+.+ ..+.+||.......... .... -..... - ++..++.|+.++ .+.
T Consensus 104 ~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~--~~~~-v~~~~~~~~~~~~l~~~~~d~------~i~ 168 (313)
T 3odt_A 104 QGNVCSLSFQDGVVISGSWD------KTAKVWKEGSLVYNLQA--HNAS-VWDAKVVSFSENKFLTASADK------TIK 168 (313)
T ss_dssp SSCEEEEEEETTEEEEEETT------SEEEEEETTEEEEEEEC--CSSC-EEEEEEEETTTTEEEEEETTS------CEE
T ss_pred ccCEEEEEecCCEEEEEeCC------CCEEEEcCCcEEEeccc--CCCc-eeEEEEccCCCCEEEEEECCC------CEE
Confidence 22222233355566666643 34777882222222111 1111 111222 2 566666666543 366
Q ss_pred EEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-
Q 016416 255 EFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC- 333 (390)
Q Consensus 255 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~- 333 (390)
.||..... ..+...... ........-++. ++.++..+.+.+||..+.+-.. .+.... ..-.++...
T Consensus 169 i~d~~~~~-~~~~~~~~~-----~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~--~~~~~~----~~i~~~~~~~ 235 (313)
T 3odt_A 169 LWQNDKVI-KTFSGIHND-----VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR--TYEGHE----SFVYCIKLLP 235 (313)
T ss_dssp EEETTEEE-EEECSSCSS-----CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE--EEECCS----SCEEEEEECT
T ss_pred EEecCceE-EEEeccCcc-----cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh--hhhcCC----ceEEEEEEec
Confidence 78733221 111111110 001122334677 6777778899999998765322 111111 111223333
Q ss_pred CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 334 GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 334 ~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++ ++.|+.++ .|.+||..+
T Consensus 236 ~~~-l~~~~~dg------~v~iwd~~~ 255 (313)
T 3odt_A 236 NGD-IVSCGEDR------TVRIWSKEN 255 (313)
T ss_dssp TSC-EEEEETTS------EEEEECTTT
T ss_pred CCC-EEEEecCC------EEEEEECCC
Confidence 444 55565443 588899877
No 178
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=94.44 E-value=3 Score=39.94 Aligned_cols=143 Identities=11% Similarity=0.088 Sum_probs=77.0
Q ss_pred CEEEEEecc-CCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016416 187 SIAIIAGGS-DKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 187 ~~lyv~GG~-~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
+..++.|+. + ..+.+||..++.... ..+.........+.. ++++.+.|+.++ .+..||..+.+-
T Consensus 456 ~~~l~~~~~~d------~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg------~i~iw~~~~~~~ 522 (615)
T 1pgu_A 456 QNYVAVGLEEG------NTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMG------KILLYDLQSREV 522 (615)
T ss_dssp SSEEEEEETTT------SCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEE
T ss_pred CCEEEEeecCC------CeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCC------eEEEeeCCCCcc
Confidence 555666654 3 348899998876643 222222222333333 777777776543 477899987654
Q ss_pred EEccCCCCCCCCcCCCCCEEEE-E----------CCEEEEEecCCCeEEEEeCCCC-c-eEEccCCCccccCCCcceeEE
Q 016416 264 RKIEGMYPNVNRAAQAPPLVAV-V----------DNQLYAVEYLTNMVKKYDKLKN-T-WDVLGRLPVRADLSNGWGLAF 330 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-~----------~g~l~v~gg~~~~v~~yd~~~~-~-W~~v~~~~~~~~~~~~~~~~~ 330 (390)
.. .+... +......++. - ++++++.++..+.|.+||..+. + ...+..-... .....
T Consensus 523 ~~--~~~~~---h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~------v~~l~ 591 (615)
T 1pgu_A 523 KT--SRWAF---RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG------VNNLL 591 (615)
T ss_dssp EE--CCSCC---CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC------EEEEE
T ss_pred ee--EeecC---CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccc------eEEEE
Confidence 32 22210 0001111222 2 6788888888889999999886 2 2222211111 11112
Q ss_pred EEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 331 KACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 331 ~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..-+++ ++.+|.++ .|.+|+.++
T Consensus 592 ~s~~~~-l~s~~~d~------~v~iw~~~~ 614 (615)
T 1pgu_A 592 WETPST-LVSSGADA------CIKRWNVVL 614 (615)
T ss_dssp EEETTE-EEEEETTS------CEEEEEEC-
T ss_pred EcCCCC-eEEecCCc------eEEEEeeec
Confidence 234777 77777654 377888764
No 179
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.15 E-value=1.9 Score=38.57 Aligned_cols=186 Identities=8% Similarity=-0.045 Sum_probs=89.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCC--CCCCCcc-eeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEG--MNHPRCL-FGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~--~~~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++.+ +.|+ ....+.+||..+++-..... +...... .+++. -+++.++.|+.++ .+.++|..+++-..
T Consensus 93 d~~l-~~~s--~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~------~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 93 ERGI-LVAS--DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI------CIKVWDLAQQVVLS 163 (344)
T ss_dssp TTEE-EEEE--TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEE
T ss_pred CCeE-EEEE--CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC------eEEEEECCCCcEEE
Confidence 3443 4443 24578889988765321111 0011111 12222 2566777776543 48889998876433
Q ss_pred cCCCCCCCcCceEEEE--CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEE
Q 016416 218 LPSMHSPRRLCSGFFM--DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYA 292 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v 292 (390)
. +.........+.. ++ .+++.|+.++ .+..||+.+.+-...-..... ......++.. ++++++
T Consensus 164 ~--~~~h~~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 164 S--YRAHAAQVTCVAASPHKDSVFLSCSEDN------RILLWDTRCPKPASQIGCSAP----GYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp E--ECCCSSCEEEEEECSSCTTEEEEEETTS------CEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEE
T ss_pred E--EcCcCCceEEEEecCCCCCceeeecccc------ccccccccccceeeeeeccee----eccceeeeecCCCCcceE
Confidence 2 1211112222222 33 5666666543 467799987764332111110 0000112222 566788
Q ss_pred EecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-C-CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 293 VEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-G-NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~-~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.|+..+.|.+||..+.+- +..+.... ..-.+++.. + .++++.|+.++ .|.+||..+
T Consensus 232 sg~~dg~v~~wd~~~~~~--~~~~~~h~----~~v~~v~fsp~g~~~lasgs~D~------~i~vwd~~~ 289 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSC--VLSSAVHS----QCVTGLVFSPHSVPFLASLSEDC------SLAVLDSSL 289 (344)
T ss_dssp EEETTSEEEEEESCC--C--CEEEECCS----SCEEEEEECSSSSCCEEEEETTS------CEEEECTTC
T ss_pred EeccCCcEEEEECCCCcE--EEEEcCCC----CCEEEEEEccCCCeEEEEEeCCC------eEEEEECCC
Confidence 888888999999877542 21121111 111222222 3 35666676553 377888766
No 180
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.10 E-value=0.81 Score=41.26 Aligned_cols=144 Identities=10% Similarity=-0.017 Sum_probs=77.6
Q ss_pred EEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE-EE--CCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016416 188 IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF-FM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 188 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
.+++.|+.++ .+.+||..++.....-...........+ .. ++.+++.|+.+ ..+..||+.+....
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~ 154 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQ 154 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEE
T ss_pred CEEEEEcCCC------eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceE
Confidence 4666666543 4889999888766543322222222222 33 34666666543 35778999887666
Q ss_pred EccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-CCE-EEEEc
Q 016416 265 KIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-GNE-LLVVG 341 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~~~-lyv~G 341 (390)
.+........ ....++ .-++++++.|+..+.+..||.....-..+..-.. .-.++... ++. +++.|
T Consensus 155 ~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 155 VFAKTDSWDY----WYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKA-------KVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp EEECCCCSSC----CEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSS-------CEEEEEECSSCTTEEEEE
T ss_pred EEeccCCCCC----CeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCC-------cEEEEEECCCCCCEEEEE
Confidence 5543322100 001122 2356777778888899999986544333322111 11222222 344 77777
Q ss_pred CCCCCCCCeEEEeeecCCC
Q 016416 342 GQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 342 G~~~~~~~~~~i~~y~~~~ 360 (390)
+.++ .|.+||..+
T Consensus 224 ~~d~------~i~iwd~~~ 236 (383)
T 3ei3_B 224 SVDA------TVKLWDLRN 236 (383)
T ss_dssp ETTS------EEEEEEGGG
T ss_pred eCCC------EEEEEeCCC
Confidence 6553 577888765
No 181
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=93.98 E-value=2.6 Score=35.87 Aligned_cols=187 Identities=12% Similarity=-0.033 Sum_probs=100.8
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCCcEeecCC
Q 016416 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFRSWMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~ 172 (390)
...||+.. +...+..+|+....-..+..... .....++. ++.||+... ....+.++++....-..+..
T Consensus 47 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------~~p~~ia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~ 118 (267)
T 1npe_A 47 DKVVYWTDISEPSIGRASLHGGEPTTIIRQDL------GSPEGIALDHLGRTIFWTDS--QLDRIEVAKMDGTQRRVLFD 118 (267)
T ss_dssp TTEEEEEETTTTEEEEEESSSCCCEEEECTTC------CCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEC
T ss_pred CCEEEEEECCCCEEEEEecCCCCcEEEEECCC------CCccEEEEEecCCeEEEEEC--CCCEEEEEEcCCCCEEEEEE
Confidence 45677664 35678888887553222211100 01112232 578888753 24578888886543322221
Q ss_pred CCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCC
Q 016416 173 MNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPT 247 (390)
Q Consensus 173 ~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~ 247 (390)
... ....++++- ++.||+..... ....++++++....-+.+.... ........+ +++||+.-.
T Consensus 119 ~~~-~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~----- 186 (267)
T 1npe_A 119 TGL-VNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQDN--LGLPNGLTFDAFSSQLCWVDA----- 186 (267)
T ss_dssp SSC-SSEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECTT--CSCEEEEEEETTTTEEEEEET-----
T ss_pred CCC-CCccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEECC--CCCCcEEEEcCCCCEEEEEEC-----
Confidence 111 111233332 68999985321 1246888887654333332111 112333333 568999742
Q ss_pred ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceE
Q 016416 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWD 311 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~ 311 (390)
..+.+.+||+....-..+.. .. .....++..++.||+.....+.|.++|+.+.+-.
T Consensus 187 -~~~~I~~~~~~g~~~~~~~~--~~-----~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 187 -GTHRAECLNPAQPGRRKVLE--GL-----QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp -TTTEEEEEETTEEEEEEEEE--CC-----CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEE
T ss_pred -CCCEEEEEecCCCceEEEec--CC-----CCceEEEEeCCEEEEEECCCCeEEEEeCCCCCce
Confidence 23578889987643222211 10 0112466678999999887889999999877643
No 182
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.94 E-value=4.9 Score=38.95 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=64.1
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcc--cCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--Eee
Q 016416 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDEC--FNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMK 169 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~--~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~ 169 (390)
.+..+|+......++++|..+. .|..-...+.... ...........++.||+... ...++.+|..|++ |+.
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~---dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL---DASVVALNKNTGKVVWKK 143 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET---TTEEEEEESSSCCEEEEE
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC---CCEEEEEECCCCCEEeee
Confidence 4678888776456999999855 4875433322110 00001223456888887542 3578999998885 765
Q ss_pred cCCCCCCC--cceeeeeeCC------EEEEEeccCCCCCccceEEEEECCCCc--EEE
Q 016416 170 CEGMNHPR--CLFGSGSLGS------IAIIAGGSDKNGHVLKSAELYDSTTGR--WEM 217 (390)
Q Consensus 170 ~~~~~~~r--~~~~~~~~~~------~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 217 (390)
-...+... .....++.++ .||+ |...........+..||..+++ |+.
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 32211100 1112233455 6655 3221110124568999999886 865
No 183
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=93.93 E-value=3.3 Score=36.96 Aligned_cols=135 Identities=14% Similarity=0.126 Sum_probs=71.8
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeee----CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCce
Q 016416 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL----GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCS 229 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~ 229 (390)
+..+.+||..+++-... +........+..+ ++..++.|+.++ .+.+||..+++....- ........
T Consensus 175 D~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~--~~h~~~v~ 244 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAF--ETHESDVN 244 (354)
T ss_dssp TSEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEE--CCCSSCEE
T ss_pred CCcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEe--cCCCCCeE
Confidence 45788999988764321 1111111111111 346777777653 4889999888754321 11111222
Q ss_pred EEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE--EECCEEEEEecCCCeEEEEeC
Q 016416 230 GFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA--VVDNQLYAVEYLTNMVKKYDK 305 (390)
Q Consensus 230 ~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~g~l~v~gg~~~~v~~yd~ 305 (390)
.+.. ++..++.|+.++ .+..||+.+..-...-..... ......+ ..+|++++.|+..+.|.+||.
T Consensus 245 ~v~~~p~~~~l~s~s~D~------~v~lwd~~~~~~~~~~~~~~~-----~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 245 SVRYYPSGDAFASGSDDA------TCRLYDLRADREVAIYSKESI-----IFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp EEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCTTC-----CSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeCCCCEEEEEeCCC------eEEEEECCCCcEEEEEcCCCc-----ccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 3333 566677766543 467789887643322111110 0111122 235777888877789999998
Q ss_pred CCCc
Q 016416 306 LKNT 309 (390)
Q Consensus 306 ~~~~ 309 (390)
.+.+
T Consensus 314 ~~~~ 317 (354)
T 2pbi_B 314 LKGS 317 (354)
T ss_dssp TTCS
T ss_pred CCCc
Confidence 7654
No 184
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.93 E-value=2.7 Score=36.04 Aligned_cols=183 Identities=11% Similarity=0.097 Sum_probs=85.4
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 140 AVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
..++..++.|+. ...+.+||........ .....+.........++..++.|+.++ .+.+||..... ....
T Consensus 111 ~~~~~~l~~~~~--d~~i~~~d~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~-~~~~ 180 (313)
T 3odt_A 111 SFQDGVVISGSW--DKTAKVWKEGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADK------TIKLWQNDKVI-KTFS 180 (313)
T ss_dssp EEETTEEEEEET--TSEEEEEETTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTS------CEEEEETTEEE-EEEC
T ss_pred EecCCEEEEEeC--CCCEEEEcCCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCC------CEEEEecCceE-EEEe
Confidence 334445555543 4567888832222211 111111111111222556666666543 37788833221 2222
Q ss_pred CCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCC
Q 016416 220 SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLT 297 (390)
Q Consensus 220 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~ 297 (390)
.............-++. ++.|+.+ ..+..||..+.+-.. +..... ....++.. ++ .++.++..
T Consensus 181 ~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~-~l~~~~~d 245 (313)
T 3odt_A 181 GIHNDVVRHLAVVDDGH-FISCSND------GLIKLVDMHTGDVLRTYEGHES-------FVYCIKLLPNG-DIVSCGED 245 (313)
T ss_dssp SSCSSCEEEEEEEETTE-EEEEETT------SEEEEEETTTCCEEEEEECCSS-------CEEEEEECTTS-CEEEEETT
T ss_pred ccCcccEEEEEEcCCCe-EEEccCC------CeEEEEECCchhhhhhhhcCCc-------eEEEEEEecCC-CEEEEecC
Confidence 11111111112234677 5555543 357889988765322 111111 01123332 44 35567777
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+.+||..+.+-...-..+... -.++.. -+++ ++.|+.++ .|.+||.++
T Consensus 246 g~v~iwd~~~~~~~~~~~~~~~~------i~~~~~~~~~~-~~~~~~dg------~i~iw~~~~ 296 (313)
T 3odt_A 246 RTVRIWSKENGSLKQVITLPAIS------IWSVDCMSNGD-IIVGSSDN------LVRIFSQEK 296 (313)
T ss_dssp SEEEEECTTTCCEEEEEECSSSC------EEEEEECTTSC-EEEEETTS------CEEEEESCG
T ss_pred CEEEEEECCCCceeEEEeccCce------EEEEEEccCCC-EEEEeCCC------cEEEEeCCC
Confidence 89999999888654432222111 122222 2556 45566553 488999987
No 185
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=93.93 E-value=6 Score=39.92 Aligned_cols=217 Identities=10% Similarity=-0.022 Sum_probs=116.3
Q ss_pred EeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCC----c-EeecC-CC
Q 016416 103 VCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFR----S-WMKCE-GM 173 (390)
Q Consensus 103 ~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~----~-W~~~~-~~ 173 (390)
+.....+..+++....+..+..... ....+.+ ++.||+.-.. ...++++++... . ...+. .+
T Consensus 400 ~an~~~Ir~i~l~~~~~~~l~~~~~-------~~~gl~~d~~~~~lY~sD~~--~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 400 FTNRHEVRKMTLDRSEYTSLIPNLR-------NVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EECBSSEEEECTTSCCCEEEECSCS-------SEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSC
T ss_pred cccccceeEeeccCCcceeeecCCC-------ceEEEeecccCCeeEEeecc--ceeEEEEeccCCCCCcceeEEEecCC
Confidence 3345566777776665554422111 1122332 5788876532 356777776542 2 22222 12
Q ss_pred CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEEE---CCEEEEEecccCCCc
Q 016416 174 NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFFM---DGKFYVIGGMSSPTV 248 (390)
Q Consensus 174 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~ 248 (390)
..+. ..++-..+++||+.-.. ...|+++++....-+.+. .+.. ...+++ ++.||+.--.
T Consensus 471 ~~P~-GLAvD~~~~~LY~tD~~------~~~I~v~~ldG~~~~~l~~~~l~~----P~gIaVDp~~g~LYwtD~g----- 534 (791)
T 3m0c_C 471 QAPD-GLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSK----PRAIVVDPVHGFMYWTDWG----- 534 (791)
T ss_dssp SCCC-EEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEEECTTCC----EEEEEEETTTTEEEEEECS-----
T ss_pred CCcc-eeeeeecCCcEEEEecC------CCeEEEEeCCCCeEEEEEeCCCCC----cceEEEecCCCCEEEecCC-----
Confidence 2221 12222247899998532 356899998866654442 2222 233333 6899997311
Q ss_pred cCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcc
Q 016416 249 SLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 249 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 326 (390)
....|+++++....=..+..-.. ....++++- +++||+.......|+++|+....=..+....... ..
T Consensus 535 ~~~~I~~~~~dG~~~~~lv~~~l------~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l----~~ 604 (791)
T 3m0c_C 535 TPAKIKKGGLNGVDIYSLVTENI------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL----AH 604 (791)
T ss_dssp SSCEEEEEETTSCCEEEEECSSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT----SS
T ss_pred CCCeEEEEecCCCceEEEEeCCC------CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCcc----CC
Confidence 12468888887654443322111 011134443 7899999988899999999765433332211111 01
Q ss_pred eeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 327 GLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 327 ~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++++.+++||+.-... ..|+..+..+
T Consensus 605 P~glav~~~~lYwtD~~~------~~I~~~dk~t 632 (791)
T 3m0c_C 605 PFSLAVFEDKVFWTDIIN------EAIFSANRLT 632 (791)
T ss_dssp EEEEEEETTEEEEEETTT------TEEEEEETTT
T ss_pred CCEEEEeCCEEEEEECCC------CEEEEEeCCC
Confidence 245667899999988543 2466666554
No 186
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.91 E-value=3.5 Score=37.17 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=93.3
Q ss_pred CCeEEEEECCCCcEeecC--CCCCCC-cce-eeee--eCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCC
Q 016416 154 DFAIWKYSLVFRSWMKCE--GMNHPR-CLF-GSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPR 225 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~--~~~~~r-~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r 225 (390)
+..+.+||..+++-...- ..+... ... .+.. .++.+++.|+.++ .+.+||..... -..+. ...
T Consensus 179 D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~---~h~ 249 (380)
T 3iz6_a 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRAVRTYH---GHE 249 (380)
T ss_dssp TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCCCEEEC---CCS
T ss_pred CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcceEEEC---CcC
Confidence 457888998887653321 111111 111 1111 2567888887654 37888986321 11111 111
Q ss_pred cCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCC-CCcCCCCCEEE-EECCEEEEEecCCCeEE
Q 016416 226 RLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNV-NRAAQAPPLVA-VVDNQLYAVEYLTNMVK 301 (390)
Q Consensus 226 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~~~~~~~-~~~g~l~v~gg~~~~v~ 301 (390)
.....+.. +++.++.|+.++ .+..||+.+..-...-...... .........++ ..+|++++.|+..+.+.
T Consensus 250 ~~v~~v~~~p~~~~l~s~s~D~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 323 (380)
T 3iz6_a 250 GDINSVKFFPDGQRFGTGSDDG------TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323 (380)
T ss_dssp SCCCEEEECTTSSEEEEECSSS------CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred CCeEEEEEecCCCeEEEEcCCC------eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence 11122222 567777766543 4677999887543322111110 00000111222 34678888888888999
Q ss_pred EEeCCCCceEE-ccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 302 KYDKLKNTWDV-LGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 302 ~yd~~~~~W~~-v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+||..+.+-.. +..+..... +.-.++. .-++..++.|+.++ .|.+|+...
T Consensus 324 vwd~~~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~~l~sgs~D~------~i~iW~~~~ 375 (380)
T 3iz6_a 324 VWDTLLAEMVLNLGTLQNSHE---GRISCLGLSSDGSALCTGSWDK------NLKIWAFSG 375 (380)
T ss_dssp EEETTTCCEEEEECCSCSSCC---CCCCEEEECSSSSEEEEECTTS------CEEEEECCS
T ss_pred EEECCCCceEEEEecccCCCC---CceEEEEECCCCCEEEEeeCCC------CEEEEecCC
Confidence 99987766433 222211111 1111222 23677888888764 377888765
No 187
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=93.90 E-value=3 Score=36.42 Aligned_cols=185 Identities=11% Similarity=-0.030 Sum_probs=87.1
Q ss_pred cEEEEEeCCCeeEEEecCCCc----eeeCCCCCCCcccCCCCeeEEEeCCE-EEEEcccccCCeEEEEEC-CCCcEeecC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKK----WMALPKIPCDECFNHADKESLAVGSE-LLVFGRELFDFAIWKYSL-VFRSWMKCE 171 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~----W~~l~~~p~~~~~~~~~~~~~~~~~~-iy~~Gg~~~~~~~~~yd~-~t~~W~~~~ 171 (390)
..|+..+....+..||..... ...+..... ......+..++. .++.|+. ...+.+||. .+.+...+.
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~ 96 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVGTV--QGEILKVDLIGSPSFQALT 96 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEEET--TSCEEEECSSSSSSEEECB
T ss_pred CEEEEEcCCCeEEEEEeCCCCccccceeeeecCC-----ceEEEEECCCCCcEEEEEcC--CCeEEEEEeccCCceEecc
Confidence 445444455667778776554 221110000 000112223555 5555553 457899999 887765554
Q ss_pred CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-------EEEcCCCCCCCcCceEEEECCEEEEEeccc
Q 016416 172 GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-------WEMLPSMHSPRRLCSGFFMDGKFYVIGGMS 244 (390)
Q Consensus 172 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-------W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 244 (390)
..+....-.++....+..++.|+.+ ..+.+||..+.. .+.+..+.....-.+.....+. +++|+.+
T Consensus 97 ~~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d 169 (342)
T 1yfq_A 97 NNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNN 169 (342)
T ss_dssp SCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEEST
T ss_pred ccCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCC
Confidence 4111111122222224455555543 347788876400 2222222212111222333445 4444432
Q ss_pred CCCccCceEEEEeCCC-Cc--eEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCC
Q 016416 245 SPTVSLTCGEEFDLET-RK--WRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~-~~--W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~ 308 (390)
..+..||..+ .. ......... .....++.. ++.+++.|+..+.+.+||....
T Consensus 170 ------~~i~i~d~~~~~~~~~~~~~~~~~------~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 170 ------SQVQWFRLPLCEDDNGTIEESGLK------YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp ------TEEEEEESSCCTTCCCEEEECSCS------SCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred ------CeEEEEECCccccccceeeecCCC------CceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 3577899887 33 222211111 001123333 5778888887788888776554
No 188
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.87 E-value=2.6 Score=36.74 Aligned_cols=147 Identities=15% Similarity=0.043 Sum_probs=71.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++.+++.|+. +..+..++.......................-.+..++.|+.++ .+.++|.....-.....
T Consensus 97 dg~~l~s~~~--d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~------~~~~~d~~~~~~~~~~~- 167 (340)
T 4aow_A 97 DGQFALSGSW--DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK------TIKLWNTLGVCKYTVQD- 167 (340)
T ss_dssp TSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCEEEEECS-
T ss_pred CCCEEEEEcc--cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC------eEEEEEeCCCceEEEEe-
Confidence 4555555543 34677788777655443322222222122222445555665443 36677766543322211
Q ss_pred CCCCcCceEEEE----CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecC
Q 016416 222 HSPRRLCSGFFM----DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYL 296 (390)
Q Consensus 222 ~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~ 296 (390)
.........+.+ .+.+++.|+.+ ..+..||..+.+....-..... ....++. -++++++.|+.
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~~h~~------~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWD------KLVKVWNLANCKLKTNHIGHTG------YLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTTEEEEEECCCSS------CEEEEEECTTSSEEEEEET
T ss_pred ccccCcccceEEccCCCCcEEEEEcCC------CEEEEEECCCCceeeEecCCCC------cEEEEEECCCCCEEEEEeC
Confidence 111111222222 22455555543 2467788887664332111110 0011222 25777888888
Q ss_pred CCeEEEEeCCCCc
Q 016416 297 TNMVKKYDKLKNT 309 (390)
Q Consensus 297 ~~~v~~yd~~~~~ 309 (390)
-+.+.+||..+.+
T Consensus 236 Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 236 DGQAMLWDLNEGK 248 (340)
T ss_dssp TCEEEEEETTTTE
T ss_pred CCeEEEEEeccCc
Confidence 8899999987754
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.85 E-value=0.39 Score=42.44 Aligned_cols=113 Identities=10% Similarity=-0.072 Sum_probs=65.1
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++++|+.+... ..+.+||+.+++.+.+...+ . .....+.. +|++|+....... ....+++||+.+...
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~-~-~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSH-K-ANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNL 124 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEECS-S-SSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEeeCC-C-CCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCCEE
Confidence 57788876532 35899999998877643111 1 12223333 6788887533211 124688999998876
Q ss_pred EEc-cCCCCCCCCcCCCCCEEE-EECCEEEEEecC------CCeEEEEeCCCCceEEc
Q 016416 264 RKI-EGMYPNVNRAAQAPPLVA-VVDNQLYAVEYL------TNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~------~~~v~~yd~~~~~W~~v 313 (390)
..+ ...... .....++ .-+|++|+.... ...+++||+++++...+
T Consensus 125 ~~~~~~~~~~-----~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 125 QDIIEDLSTA-----YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp EEEECSSSSC-----CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred EEEEccCccC-----CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 533 211111 0111122 236788887542 35799999988776654
No 190
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=93.84 E-value=2.5 Score=36.43 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=100.9
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcc
Q 016416 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCL 179 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 179 (390)
++..+....+..+|..+.+...+-.+..+.. ......+..++..++.|+. +..+.+||..+++-........ ..
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~--~V~~v~~~~~~~~l~sgs~--Dg~v~iw~~~~~~~~~~~~~h~--~~ 111 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGE--YISSVAWIKEGNYLAVGTS--SAEVQLWDVQQQKRLRNMTSHS--AR 111 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTC--CEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEECCS--SC
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCC--eEEEEEECCCCCEEEEEEC--CCcEEEeecCCceeEEEecCcc--ce
Confidence 4444546678889998876554322221110 0000112225566666653 4578899998876433211111 11
Q ss_pred eeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE--EECCEEEEEecccCCCccCceEEEEe
Q 016416 180 FGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF--FMDGKFYVIGGMSSPTVSLTCGEEFD 257 (390)
Q Consensus 180 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd 257 (390)
.......+.+.+.|+..+ .+..++..+...... .+.......... ..+++..+.|+.++ .+..||
T Consensus 112 ~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd 178 (318)
T 4ggc_A 112 VGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGNDN------LVNVWP 178 (318)
T ss_dssp EEEEEEETTEEEEEETTS------EEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEE
T ss_pred EEEeecCCCEEEEEecCC------ceEeeecCCCceeEE-EEcCccCceEEEEEcCCCCEEEEEecCc------ceeEEE
Confidence 222333455555555432 345555554432211 111111111111 22555555555432 366788
Q ss_pred CCCCceEE--ccCCCCCCCCcCCCCCEEEEE--CCEE-EEEe-cCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016416 258 LETRKWRK--IEGMYPNVNRAAQAPPLVAVV--DNQL-YAVE-YLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 258 ~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~--~g~l-~v~g-g~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
..+.+-.. ....... .......+.. ++.+ ++.+ ...+.+..||.....-.......... ......
T Consensus 179 ~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v-----~~~~~~ 249 (318)
T 4ggc_A 179 SAPGEGGWVPLQTFTQH----QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV-----CSILWS 249 (318)
T ss_dssp SSCBTTBSCCSEEECCC----CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCE-----EEEEEE
T ss_pred CCCCcccccceeeeccc----CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeee-----eeeeec
Confidence 87653211 1000000 0000011111 2233 3333 34567889998877654432222111 112222
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 332 ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++.+++.+|.... .|.+||..+
T Consensus 250 ~~~~~~~~~sg~~d~-----~i~iwd~~~ 273 (318)
T 4ggc_A 250 PHYKELISGHGFAQN-----QLVIWKYPT 273 (318)
T ss_dssp TTTTEEEEEECTTTC-----CEEEEETTT
T ss_pred ccccceEEEEEcCCC-----EEEEEECCC
Confidence 235566666554321 477898866
No 191
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.81 E-value=4 Score=37.53 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=49.7
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016416 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
.++.+++.|+. ...+.+||...+.-. .+.........+.+ +..+++.|+.++ .+.+||..+..-..
T Consensus 219 ~~~~~l~~g~~--dg~i~~wd~~~~~~~---~~~~h~~~v~~v~~~p~~~~~~~s~s~d~------~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 219 ASSRMVVTGDN--VGNVILLNMDGKELW---NLRMHKKKVTHVALNPCCDWFLATASVDQ------TVKIWDLRQVRGKA 287 (435)
T ss_dssp TTTTEEEEECS--SSBEEEEESSSCBCC---CSBCCSSCEEEEEECTTCSSEEEEEETTS------BCCEEETTTCCSSS
T ss_pred CCCCEEEEEeC--CCcEeeeccCcceeE---EEecccceEEeeeecCCCceEEEEecCcc------eeeEEecccccccc
Confidence 35566666653 357888897654322 22211111222222 345666666543 36678887654321
Q ss_pred cC-CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCc
Q 016416 218 LP-SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 218 ~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
.- ...........+.. +|...+.|+.++ .+..||..+..
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~------~i~iwd~~~~~ 329 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKS------EIRVYSASQWD 329 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEESSS------CEEEEESSSSS
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcCCC------EEEEEECCCCc
Confidence 10 00111111111221 566666666543 36678877643
No 192
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.81 E-value=0.42 Score=44.33 Aligned_cols=108 Identities=7% Similarity=-0.035 Sum_probs=59.5
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016416 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
+.+++.|+.++ .+.++|..++.-..+-........-..+.. ++.+++.|+.++ .+.++|+.++..
T Consensus 132 ~~~lasGs~dg------~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~~~~~ 199 (435)
T 4e54_B 132 PSTVAVGSKGG------DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFKGNIL 199 (435)
T ss_dssp TTCEEEEETTS------CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETTSCEE
T ss_pred CCEEEEEeCCC------EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeeccCCce
Confidence 44566676543 378888877654332222212222222322 566666666543 467789988766
Q ss_pred EEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016416 264 RKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
..+....... ..........++.+++.|+..+.|..||...+.
T Consensus 200 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~ 242 (435)
T 4e54_B 200 RVFASSDTIN---IWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242 (435)
T ss_dssp EEEECCSSCS---CCCCCEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred eEEeccCCCC---ccEEEEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence 5544322211 001112233467788888888899999987653
No 193
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.76 E-value=3.6 Score=36.85 Aligned_cols=173 Identities=10% Similarity=0.030 Sum_probs=95.6
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC--CCCCCcCceE
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS--MHSPRRLCSG 230 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~ 230 (390)
+.+.++++.......+..- .....+++. .++.||+.--. ...+.++++....-+.+.. +..+ .+.
T Consensus 53 ~~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~~~~~p---~gl 121 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVSTGLESP---GGL 121 (349)
T ss_dssp SCEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSSCSCC---CEE
T ss_pred cceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEecc------CCceEEEecCCCCceEEEeCCCCCc---cEE
Confidence 3577777777666554321 112223333 36899998432 3568899998776554321 2222 233
Q ss_pred EE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCC-CeEEEEeC
Q 016416 231 FF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLT-NMVKKYDK 305 (390)
Q Consensus 231 ~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~-~~v~~yd~ 305 (390)
++ .+++||+.-.. ...|+++++....-..+...... ....+++- +|.||+.+... ..|+++|+
T Consensus 122 avd~~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~~~l~------~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 122 AVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLE------KPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECTTCS------CEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEecCCCeEEEEcCC------CCeEEEEcCCCCceEEEEeCCCC------CcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 33 37899997432 34688888876543333211100 01134544 68999998655 89999998
Q ss_pred CCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 306 LKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 306 ~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+...-..+..-. .... .|.++-..+++||+.-... ..|+++|++.
T Consensus 190 dG~~~~~~~~~~--~~~P--nGla~d~~~~~lY~aD~~~------~~I~~~~~dG 234 (349)
T 3v64_C 190 DGSGRRIIADTH--LFWP--NGLTIDYAGRRMYWVDAKH------HVIERANLDG 234 (349)
T ss_dssp TSCSCEESCCSS--CSCE--EEEEEETTTTEEEEEETTT------TEEEEEETTS
T ss_pred CCCCcEEEEECC--CCCc--ceEEEeCCCCEEEEEECCC------CEEEEEeCCC
Confidence 876544442211 1100 1222222478999986532 2477777654
No 194
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=93.63 E-value=5.2 Score=38.26 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=75.8
Q ss_pred EEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCc---CceEEEE--C-CEEEEEecccCCCccCceEEEEeCCCCc
Q 016416 189 AIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRR---LCSGFFM--D-GKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 189 lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~---~~~~~~~--~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
+++.|+.+ ..+.+||..+.+-... +..... ....+.. + ++.++.|+.++ .+..||..+.+
T Consensus 175 ~l~~~~~d------~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGDD------GSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKSGE 240 (615)
T ss_dssp EEEEEETT------TEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTTCC
T ss_pred EEEEEeCC------CcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCCC------eEEEEECCCCC
Confidence 66666643 3588899876654322 221111 2223332 4 67777766543 47789988876
Q ss_pred eEEccCCC--CCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEE
Q 016416 263 WRKIEGMY--PNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVV 340 (390)
Q Consensus 263 W~~~~~~~--~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~ 340 (390)
....-..+ .. ......+...++..++.++..+.+.+||..+.+-...-..+..... ....++...++..++.
T Consensus 241 ~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 241 FLKYIEDDQEPV----QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG--NQQVGVVATGNGRIIS 314 (615)
T ss_dssp EEEECCBTTBCC----CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG--GCEEEEEEEETTEEEE
T ss_pred EeEEeccccccc----CCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCccc--CceeEEEeCCCCeEEE
Confidence 54322110 10 0011112222777888888778999999987764432222210000 0112222336666666
Q ss_pred cCCCCCCCCeEEEeeecCCC
Q 016416 341 GGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 341 GG~~~~~~~~~~i~~y~~~~ 360 (390)
|+.++ .|.+||..+
T Consensus 315 ~~~~g------~i~~~d~~~ 328 (615)
T 1pgu_A 315 LSLDG------TLNFYELGH 328 (615)
T ss_dssp EETTS------CEEEEETTE
T ss_pred EECCC------CEEEEECCC
Confidence 76553 477888754
No 195
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.56 E-value=4.1 Score=43.26 Aligned_cols=226 Identities=10% Similarity=-0.002 Sum_probs=104.1
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016416 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
+...+....+..+|..+.+.... +..+. ..-..++ .++.+++.|+. +..+.+||..+++....-. ...
T Consensus 630 l~s~~~d~~i~vw~~~~~~~~~~--~~~h~----~~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~--~~~ 699 (1249)
T 3sfz_A 630 IASCGADKTLQVFKAETGEKLLD--IKAHE----DEVLCCAFSSDDSYIATCSA--DKKVKIWDSATGKLVHTYD--EHS 699 (1249)
T ss_dssp EEEEETTSCEEEEETTTCCEEEE--ECCCS----SCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEE--CCS
T ss_pred EEEEeCCCeEEEEECCCCCEEEE--eccCC----CCEEEEEEecCCCEEEEEeC--CCeEEEEECCCCceEEEEc--CCC
Confidence 33333456677888776543221 11110 0111222 25555666552 4578999998876432211 111
Q ss_pred cceeeeee----CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCc
Q 016416 178 CLFGSGSL----GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLT 251 (390)
Q Consensus 178 ~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 251 (390)
.....+.+ ++.+++.|+.+ ..+.+||..++.....- .........+.. ++...+.|+.+ .
T Consensus 700 ~~v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~~~--~~h~~~v~~~~~sp~~~~l~s~s~d------g 765 (1249)
T 3sfz_A 700 EQVNCCHFTNKSNHLLLATGSND------FFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDELLASCSAD------G 765 (1249)
T ss_dssp SCEEEEEECSSSSCCEEEEEETT------SCEEEEETTSSSEEEEE--CCCSSCEEEEEECSSTTEEEEEESS------S
T ss_pred CcEEEEEEecCCCceEEEEEeCC------CeEEEEECCCcchhhee--cCCCCCEEEEEEecCCCEEEEEECC------C
Confidence 11122222 33455555543 34888999887654321 111112222222 56666666543 2
Q ss_pred eEEEEeCCCCceEEccCCCC---C-----CCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCC
Q 016416 252 CGEEFDLETRKWRKIEGMYP---N-----VNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLS 323 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~---~-----~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~ 323 (390)
.+..||..+..-........ . .............-+|+.+++++ .+.+..||..+..............
T Consensus 766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~-- 842 (1249)
T 3sfz_A 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHST-- 842 (1249)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSC--
T ss_pred eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCc--
Confidence 46678877654322111000 0 00000000011123455555544 4789999988876544321111111
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.......-++.++++|+.++ .|.+||.++
T Consensus 843 --v~~~~~sp~~~~l~~~~~dg------~v~vwd~~~ 871 (1249)
T 3sfz_A 843 --IQYCDFSPYDHLAVIALSQY------CVELWNIDS 871 (1249)
T ss_dssp --CCEEEECSSTTEEEEECSSS------CEEEEETTT
T ss_pred --eEEEEEcCCCCEEEEEeCCC------eEEEEEcCC
Confidence 00112223567777777553 377888765
No 196
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.55 E-value=3.2 Score=36.55 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=71.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee---eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG---SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~---~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
++..++.|+ ....+.+||..+.+.........+ -.++. .-++.+++.|+.+ ..+.+||..+++-...
T Consensus 97 ~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 97 DGSKVFTAS--CDKTAKMWDLSSNQAIQIAQHDAP--VKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSNPMMV 166 (368)
T ss_dssp TSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSC--EEEEEEEECSSCEEEEEEETT------SEEEEECSSCSSCSEE
T ss_pred CCCEEEEEc--CCCcEEEEEcCCCCceeeccccCc--eEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCcEEEE
Confidence 455555554 245789999988876553221111 11222 2356777777654 3488899887653221
Q ss_pred CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEE-EEC----CEEE
Q 016416 219 PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVA-VVD----NQLY 291 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~-~~~----g~l~ 291 (390)
+..+............+++.++ + ..+..||..... +..+....... ...+. ..+ ...+
T Consensus 167 --~~~~~~~~~~~~~~~~~~~~~~-~------~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 167 --LQLPERCYCADVIYPMAVVATA-E------RGLIVYQLENQPSEFRRIESPLKHQ------HRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp --EECSSCEEEEEEETTEEEEEEG-G------GCEEEEECSSSCEEEEECCCSCSSC------EEEEEEEECTTSCEEEE
T ss_pred --EecCCCceEEEecCCeeEEEeC-C------CcEEEEEeccccchhhhccccccCC------CceEEEcccCCCCCCeE
Confidence 1111112223334555444433 2 236667776543 33333221110 00111 122 2336
Q ss_pred EEecCCCeEEEEeCCCC
Q 016416 292 AVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~ 308 (390)
+.|+..+.+.+||....
T Consensus 232 ~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINPP 248 (368)
T ss_dssp EEEETTSEEEEEESSCS
T ss_pred EEecCCCcEEEEecCCC
Confidence 77777888999998775
No 197
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.47 E-value=4.2 Score=36.64 Aligned_cols=231 Identities=15% Similarity=0.141 Sum_probs=108.9
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
..|...+....+..+|..+.+-...-...... .....+..++..++.||.+ ..+.+||..+..-.. ..++..+
T Consensus 79 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~----v~~~~~s~~g~~las~~~d--~~v~iw~~~~~~~~~-~~~~~~~ 151 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALTSQKTHAIKLHCPW----VMECAFAPNGQSVACGGLD--SACSIFNLSSQADRD-GNMPVSR 151 (380)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEEECCCTT----CCCCEECTTSSEEEECCSS--SCCEEEECCCCSSCC-CSSTTCC
T ss_pred CEEEEEeCCCeEEEEECCCCccceEEecCCCC----EEEEEECCCCCEEEEeeCC--CcEEEEECCCCcccc-CCcccee
Confidence 34444444566777887765432211111110 0111334456666777643 456677765432111 0111111
Q ss_pred --cce-----eeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcC-ceEEEE---CCEEEEEec
Q 016416 178 --CLF-----GSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRL-CSGFFM---DGKFYVIGG 242 (390)
Q Consensus 178 --~~~-----~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~-~~~~~~---~~~iyv~GG 242 (390)
..| .+... ++..++.|+.+ ..+.+||..++.-...- ..+..+.. ...+.. ++.+++.|+
T Consensus 152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 152 VLTGHKGYASSCQYVPDQETRLITGSGD------QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp BCCCCSSCCCCCBCCSSSSSCEEEECTT------SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred eccCCCcceEEEEEecCCCCEEEEECCC------CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 111 11111 23345555543 34888999888754321 22222221 122222 667888777
Q ss_pred ccCCCccCceEEEEeCCCC--ceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEccCC-Cc
Q 016416 243 MSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRL-PV 318 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~-~~ 318 (390)
.++ .+..||+... .-..+..... ....++. -++..++.|+.-+.+.+||..++.-..+-.. +.
T Consensus 226 ~D~------~v~~wd~~~~~~~~~~~~~h~~-------~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 292 (380)
T 3iz6_a 226 CDT------TVRLWDLRITSRAVRTYHGHEG-------DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292 (380)
T ss_dssp TTS------CEEEEETTTTCCCCEEECCCSS-------CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred CCC------eEEEEECCCCCcceEEECCcCC-------CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc
Confidence 653 4677887632 1122211111 1112332 3567778888888999999988754332211 11
Q ss_pred cccCCCcceeEE-EEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 319 RADLSNGWGLAF-KACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 319 ~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
........-.++ ...++++++.|+.++ .|.+||..+
T Consensus 293 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg------~i~vwd~~~ 329 (380)
T 3iz6_a 293 RNDNELPIVTSVAFSISGRLLFAGYSNG------DCYVWDTLL 329 (380)
T ss_dssp SSCCSSCSCSEEEECSSSSEEEEECTTS------CEEEEETTT
T ss_pred ccccccCceEEEEECCCCCEEEEEECCC------CEEEEECCC
Confidence 100000000112 223677777777654 478898766
No 198
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=93.45 E-value=1.1 Score=39.15 Aligned_cols=175 Identities=11% Similarity=0.058 Sum_probs=84.1
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE-eCCEEEEEcccccCCeEEEEECCCC-cEeecCCCC
Q 016416 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA-VGSELLVFGRELFDFAIWKYSLVFR-SWMKCEGMN 174 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~iy~~Gg~~~~~~~~~yd~~t~-~W~~~~~~~ 174 (390)
+..+|+......+.+|| .+.+-.....++.... ...+. .++.||+... . ++.||+..+ .|.... +
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~-----~~~~~~~~g~l~v~t~----~-l~~~d~~g~~~~~~~~--~ 96 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIE-----CRPSIGKDGTIYFGSD----K-VYAINPDGTEKWRFDT--K 96 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEE-----ECCEETTTTEECCSSC----E-EEEECCCGGGGGGSCC---
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcc-----cceEEecCCcEEEecC----c-EEEECCCCcEEEEEEC--C
Confidence 45566654455688899 5443221111221100 11122 2566665322 2 888997422 243221 1
Q ss_pred CCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECC-CCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCce
Q 016416 175 HPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDST-TGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 175 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 252 (390)
... ....+..++.||+... ...+..||+. ...|+...+.+ . ..+.+.. ++.||+.. . ...
T Consensus 97 ~~~-~~~~~~~~~~l~v~t~-------~~~l~~~d~~g~~~~~~~~~~~--~-~~~~~~~~~g~l~vgt-~------~~~ 158 (330)
T 3hxj_A 97 KAI-VSDFTIFEDILYVTSM-------DGHLYAINTDGTEKWRFKTKKA--I-YATPIVSEDGTIYVGS-N------DNY 158 (330)
T ss_dssp -----CCEEEETTEEEEECT-------TSEEEEECTTSCEEEEEECSSC--C-CSCCEECTTSCEEEEC-T------TSE
T ss_pred CCc-ccCceEECCEEEEEec-------CCEEEEEcCCCCEEEEEcCCCc--e-eeeeEEcCCCEEEEEc-C------CCE
Confidence 111 1122334888887531 2347889987 22476543211 1 1122333 67777742 1 235
Q ss_pred EEEEeCCCC-ceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCC-ceEEc
Q 016416 253 GEEFDLETR-KWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKN-TWDVL 313 (390)
Q Consensus 253 v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~-~W~~v 313 (390)
++.||+... .|..-..... . ..++. .+|.||+.. +.+++||.... .|..-
T Consensus 159 l~~~d~~g~~~~~~~~~~~~-------~-~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 159 LYAINPDGTEKWRFKTNDAI-------T-SAASIGKDGTIYFGS---DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp EEEECTTSCEEEEEECSSCC-------C-SCCEECTTCCEEEES---SSEEEECTTSCEEEEEC
T ss_pred EEEECCCCCEeEEEecCCCc-------e-eeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEc
Confidence 788998722 3654321111 1 11233 467777765 78999994432 47654
No 199
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.43 E-value=4.1 Score=36.47 Aligned_cols=219 Identities=11% Similarity=0.028 Sum_probs=121.6
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE---eCCEEEEEcccccCCeEEEEECCCCcEeecCC-
Q 016416 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA---VGSELLVFGRELFDFAIWKYSLVFRSWMKCEG- 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~---~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~- 172 (390)
+++|+ +.....+..+++.......+..-.. ....++ .++.||+.-- ....++++++.......+..
T Consensus 44 ~~~ll-~~~~~~I~~i~~~g~~~~~~~~~~~-------~~~~l~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 44 EPVLL-FANRIDIRQVLPHRSEYTLLLNNLE-------NAIALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp CCEEE-EECBSCEEEECTTSCCEEEEECSCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECS
T ss_pred CceeE-eecccceEEEeCCCCeeEEeecCCC-------ceEEEEEeccccEEEEEec--cCCceEEEecCCCCceEEEeC
Confidence 34443 4455678888888766654422111 112233 2578887642 24578899988765444322
Q ss_pred -CCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEEE--CCEEEEEecccC
Q 016416 173 -MNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFFM--DGKFYVIGGMSS 245 (390)
Q Consensus 173 -~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~ 245 (390)
+..+ .++++ .++.||+.-.. ...++++++....-+.+. .+..| ...++- ++.||+.-...
T Consensus 114 ~~~~p---~glavd~~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~- 180 (349)
T 3v64_C 114 GLESP---GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN- 180 (349)
T ss_dssp SCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS-
T ss_pred CCCCc---cEEEEecCCCeEEEEcCC------CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC-
Confidence 2222 23333 47899998542 346889998765433331 22222 223333 68999974211
Q ss_pred CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCC
Q 016416 246 PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLS 323 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~ 323 (390)
...|+++++....-+.+..-.. .....+++ .+++||+.....+.|+++|++...=..+...... .
T Consensus 181 ----~~~I~r~~~dG~~~~~~~~~~~------~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-~-- 247 (349)
T 3v64_C 181 ----TPRIEASSMDGSGRRIIADTHL------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-H-- 247 (349)
T ss_dssp ----SCEEEEEETTSCSCEESCCSSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-S--
T ss_pred ----CCEEEEEeCCCCCcEEEEECCC------CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-C--
Confidence 2568899987654444322111 01113444 3789999998889999999876543333221111 0
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
-.++++.++.||+.....+ .|..++..+
T Consensus 248 ---P~giav~~~~ly~td~~~~------~V~~~~~~~ 275 (349)
T 3v64_C 248 ---PFAITVFEDSLYWTDWHTK------SINSANKFT 275 (349)
T ss_dssp ---EEEEEEETTEEEEEETTTT------EEEEEETTT
T ss_pred ---ceEEEEECCEEEEecCCCC------eEEEEEccC
Confidence 1345557899999875332 466666443
No 200
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.38 E-value=4.5 Score=42.90 Aligned_cols=69 Identities=6% Similarity=0.018 Sum_probs=40.7
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEc
Q 016416 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
+++..++|+.++ .+..||..+.+......... ..-......-+|+.++.++..+.+.+||..+++...+
T Consensus 972 ~g~~l~~g~~~g------~i~i~d~~~~~~~~~~~~h~-----~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A 972 HLEYVAFGDEDG------AIKIIELPNNRVFSSGVGHK-----KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp TSSEEEEEETTS------CCEEEETTTTSCEEECCCCS-----SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC
T ss_pred CCCEEEEEcCCC------CEEEEEcCCCceeeecccCC-----CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence 556666665432 46778888765433211111 1111122334677777788888999999998876643
No 201
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=93.07 E-value=5.7 Score=38.74 Aligned_cols=143 Identities=13% Similarity=0.017 Sum_probs=82.3
Q ss_pred CeEEEEECC-CC---cEeecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCC----
Q 016416 155 FAIWKYSLV-FR---SWMKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR---- 225 (390)
Q Consensus 155 ~~~~~yd~~-t~---~W~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r---- 225 (390)
..++++|.. ++ ....+..-. .......+ .-++++|+.+..++ ...++.+|+.++.++.+.+.....
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~ 291 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPL 291 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCC
T ss_pred cEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCcc
Confidence 579999988 56 343332211 11111222 22677777765432 246999999899998875432211
Q ss_pred c---CceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEE-EEECCEEEEEecC---C
Q 016416 226 R---LCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLV-AVVDNQLYAVEYL---T 297 (390)
Q Consensus 226 ~---~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~g~l~v~gg~---~ 297 (390)
. ....+.. ++++++.+.. + ...++.+|..++....+...... ...+ ..-++.+++..+. .
T Consensus 292 w~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~d~~~~~~~~l~~~~~~-------~~~~~s~~~~~~~~~~~~~~~~ 359 (662)
T 3azo_A 292 WTPGMRWFAPLANGLIAVVHGK-G----AAVLGILDPESGELVDAAGPWTE-------WAATLTVSGTRAVGVAASPRTA 359 (662)
T ss_dssp CSTTCCSEEECTTSCEEEEEBS-S----SCEEEEEETTTTEEEECCSSCCE-------EEEEEEEETTEEEEEEEETTEE
T ss_pred ccccCceEeEeCCCEEEEEEEc-C----ccEEEEEECCCCcEEEecCCCCe-------EEEEEecCCCEEEEEEcCCCCC
Confidence 1 1123333 6787777654 2 34678889988887766432110 0123 3446666666543 2
Q ss_pred CeEEEEeCCCCceEEcc
Q 016416 298 NMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~ 314 (390)
..++.+|..+++...+.
T Consensus 360 ~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 360 YEVVELDTVTGRARTIG 376 (662)
T ss_dssp EEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCceEEee
Confidence 47888899888887764
No 202
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.79 E-value=5.1 Score=40.08 Aligned_cols=149 Identities=10% Similarity=0.029 Sum_probs=81.2
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC-
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS- 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~- 220 (390)
++.|++.. ..-+++||+.+.++...... ....-.....-++.|++.. ...+.+||+.+++.+....
T Consensus 73 ~g~lWigT----~~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~~g~lWigt--------~~Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 73 NTYLYMGT----DNGILVYNYRADRYEQPETD-FPTDVRTMALQGDTLWLGA--------LNGLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp TTEEEEEE----TTEEEEEETTTTEECCCSCC-CCSCEEEEEEETTEEEEEE--------TTEEEEEETTTCCEEEECHH
T ss_pred CCcEEEEe----CCCeEEEeCCCCEEECcccC-CCceEEEEEecCCcEEEEc--------CCcceeEeCCCCeEEEeccC
Confidence 56677643 23578999999887652111 1111112233477777742 1247899999988876521
Q ss_pred ---CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-C-CEEEEE
Q 016416 221 ---MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-D-NQLYAV 293 (390)
Q Consensus 221 ---~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~-g~l~v~ 293 (390)
++.. ....... +|.|++.. ...+.+||+.++++..+...... .........+..- + +.|++.
T Consensus 140 ~~~l~~~--~i~~i~~d~~g~lWigt--------~~Gl~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~~~~lWig 208 (758)
T 3ott_A 140 RNGLPNN--TIYSIIRTKDNQIYVGT--------YNGLCRYIPSNGKFEGIPLPVHS-SQSNLFVNSLLEDTTRQCVWIG 208 (758)
T ss_dssp HHCCSCS--CEEEEEECTTCCEEEEE--------TTEEEEEETTTTEEEEECCCCCT-TCSSCCEEEEEEETTTTEEEEE
T ss_pred CCCcCCC--eEEEEEEcCCCCEEEEe--------CCCHhhCccCCCceEEecCCCcc-ccccceeEEEEEECCCCEEEEE
Confidence 2211 1122222 57777732 12477899999888765321110 0000001122222 2 457764
Q ss_pred ecCCCeEEEEeCCCCceEEccCC
Q 016416 294 EYLTNMVKKYDKLKNTWDVLGRL 316 (390)
Q Consensus 294 gg~~~~v~~yd~~~~~W~~v~~~ 316 (390)
. .+.+..||+.++++.....+
T Consensus 209 t--~~Gl~~~~~~~~~~~~~~~l 229 (758)
T 3ott_A 209 T--EGYLFQYFPSTGQIKQTEAF 229 (758)
T ss_dssp E--EEEEEEEETTTTEEEEEEEE
T ss_pred E--CCCCeEEcCCCCeEEeccCC
Confidence 3 24689999999988765443
No 203
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=92.70 E-value=1.9 Score=41.64 Aligned_cols=245 Identities=11% Similarity=-0.031 Sum_probs=113.7
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE-----eCCEEEEEcccccCCeEEEEECCCCcEee-cC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA-----VGSELLVFGRELFDFAIWKYSLVFRSWMK-CE 171 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~-----~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~ 171 (390)
..+|+.+....+..+|+...+-..+..++..... ....+. -+..+|+..- ..+.+.++|..+.+-.. ++
T Consensus 209 r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P---~~ia~s~~~~pDGk~l~v~n~--~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 209 RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA---RSIETSKMEGWEDKYAIAGAY--WPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE---EEEEECCSTTCTTTEEEEEEE--ETTEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC---ceeEEccccCCCCCEEEEEEc--cCCeEEEEECCCCcEEEEEe
Confidence 5566665556788888851111222222221111 011233 1345666542 34678889987765422 22
Q ss_pred CC----------CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEE
Q 016416 172 GM----------NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVI 240 (390)
Q Consensus 172 ~~----------~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~ 240 (390)
.. |.+|........++..+++--. ....+++.|..+.....+..++..+..+.... -+|+.+++
T Consensus 284 ~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~v 358 (567)
T 1qks_A 284 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFIT 358 (567)
T ss_dssp CCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred ccccccccccccCCCceEEEEEcCCCCEEEEEec-----CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEE
Confidence 11 1222222122222222332111 13457888887665544444444444444443 35554333
Q ss_pred ecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEec-CCCeEEEEeCCCC-----ceEEc
Q 016416 241 GGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEY-LTNMVKKYDKLKN-----TWDVL 313 (390)
Q Consensus 241 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg-~~~~v~~yd~~~~-----~W~~v 313 (390)
... ..+.+.++|..+++=...-+.. ....++..+.....- ++.+|+.+. ..+.|.++|..+. .|+.+
T Consensus 359 a~~-----~sn~V~ViD~~t~kl~~~i~vg-g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 359 AAN-----ARNKLVVIDTKEGKLVAIEDTG-GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEG-----GGTEEEEEETTTTEEEEEEECS-SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EeC-----CCCeEEEEECCCCcEEEEEecc-CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence 322 2456888999988643222220 111111112222222 367887763 3468999987763 39888
Q ss_pred cCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 314 GRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++...... ......--+.++|+---.........+|.+||..+
T Consensus 433 ~~i~~~g~g~--~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 433 DSFPALGGGS--LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp EEEECSCSCC--CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred EEEecCCCCC--EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 7665432110 11111112347887552221101123577888765
No 204
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.46 E-value=0.047 Score=53.21 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.6
Q ss_pred CCChHHHHHHHhhhc-cccchhhhHhhcHHHHHHh
Q 016416 48 PGLVDDVALNCLAFA-CTSDYASLLFINKRFHKLI 81 (390)
Q Consensus 48 ~~LP~dl~~~iL~rl-p~~~l~~~~~V~k~w~~l~ 81 (390)
..||||++..||.+| |.+...++..|||+|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 479999999999999 8999999999999999874
No 205
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=92.23 E-value=8.6 Score=37.07 Aligned_cols=246 Identities=11% Similarity=-0.041 Sum_probs=115.9
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECC--CCcEeecCC
Q 016416 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLV--FRSWMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~--t~~W~~~~~ 172 (390)
.+.+|+.. +...+..+|+.+.+-.. .++.....+ ...+.. +..+|+.+. ...+.+||+. +.+- +..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~--~i~~g~~p~---~v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~~--v~~ 235 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKT--VLDTGYAVH---ISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTT--VAE 235 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEE--EEECSSCEE---EEEECTTSCEEEEEET---TSEEEEEETTSSSCCE--EEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEE--EEeCCCCcc---ceEECCCCCEEEEEcC---CCeEEEEECCCCCCcE--eEE
Confidence 34566654 46788899998775432 122211111 112222 456777653 4589999985 4432 222
Q ss_pred CCCCCcceeeeee------CCEEEEEeccCCCCCccceEEEEECCCCcEEE-cC--CCC--------CCCcCceEEEECC
Q 016416 173 MNHPRCLFGSGSL------GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-LP--SMH--------SPRRLCSGFFMDG 235 (390)
Q Consensus 173 ~~~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~--~~~--------~~r~~~~~~~~~~ 235 (390)
++.......++.- +..+|+.... ...+.++|..+.+=.. ++ .++ .+|...-.+..++
T Consensus 236 i~~G~~P~~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 236 IKIGSEARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred EecCCCCceeEEccccCCCCCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 2222222233332 3467776432 3567889977765322 11 111 1221111111233
Q ss_pred EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEE-EEECCE-EEEEecCCCeEEEEeCCCCceEEc
Q 016416 236 KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLV-AVVDNQ-LYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 236 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~g~-l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
..+++.-. ....+...|..+.....+..++... ..+.. ..-+|+ +|+.....+.|.++|..+++=..
T Consensus 310 ~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~i~~~~-----~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~- 378 (567)
T 1qks_A 310 PEFIVNVK-----ETGKILLVDYTDLNNLKTTEISAER-----FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA- 378 (567)
T ss_dssp SEEEEEET-----TTTEEEEEETTCSSEEEEEEEECCS-----SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-
T ss_pred CEEEEEec-----CCCeEEEEecCCCccceeeeeeccc-----cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE-
Confidence 33333211 1345777787776554443333211 11112 223444 55555567899999999885322
Q ss_pred cCCCc-cccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccC
Q 016416 314 GRLPV-RADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 314 ~~~~~-~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p 376 (390)
..+. ....+.+.|..+..- ++.+|+.+-... ..|-++|.+++.. ....|+++..++
T Consensus 379 -~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~-----~~Vsvid~~~~~~-~~~~~kvv~~i~ 436 (567)
T 1qks_A 379 -IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD-----DSVALIGTDPEGH-PDNAWKILDSFP 436 (567)
T ss_dssp -EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS-----SEEEEEECCTTTC-TTTBTSEEEEEE
T ss_pred -EEeccCcCCCCccceeeECCCCCcEEEeCCCCC-----CeEEEecCCCCCC-ccccCEEEEEEe
Confidence 2222 111111223333222 367777663211 1466777665211 123488877654
No 206
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=92.13 E-value=0.68 Score=40.85 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=58.0
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCCccCceEEEEeCCCCce
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++.+|+.++.+ ..+.++|+.+++....-+.+........+.. ++ .+|+.+.. ...+..||+.+.+-
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKN 77 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTTTEE
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCCCcE
Confidence 67888887643 4689999998875432222221012233332 45 57776532 24688899988765
Q ss_pred EEccCCCCCCCCcCCCCCEEEE-ECC-EEEEEecC-----------CCeEEEEeCCCCc
Q 016416 264 RKIEGMYPNVNRAAQAPPLVAV-VDN-QLYAVEYL-----------TNMVKKYDKLKNT 309 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg~-----------~~~v~~yd~~~~~ 309 (390)
...-..+............++. -+| .+|+.+.. .+.+.+||.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 4322221100000000112332 245 45555422 4789999988743
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=92.12 E-value=5.8 Score=34.88 Aligned_cols=189 Identities=12% Similarity=0.019 Sum_probs=93.8
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016416 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
..+|... ....++.||+.+.+...+. .+... .......++.+++.. ...+++||+.+++...+...+..
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v-----~~i~~~~dg~l~v~~----~~gl~~~d~~~g~~~~~~~~~~~ 130 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTVHA-LPFMG-----SALAKISDSKQLIAS----DDGLFLRDTATGVLTLHAELESD 130 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCE-----EEEEEEETTEEEEEE----TTEEEEEETTTCCEEEEECSSTT
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEE-CCCcc-----eEEEEeCCCeEEEEE----CCCEEEEECCCCcEEEEeeCCCC
Confidence 4555554 3567888999877554332 12110 011233467777754 23589999999888766443211
Q ss_pred --Ccce-ee-eeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCCccC
Q 016416 177 --RCLF-GS-GSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTVSL 250 (390)
Q Consensus 177 --r~~~-~~-~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~ 250 (390)
.... .. ..-++++|+.............+++|| +++.+.+.. ........+.. ++ .+|+.... .
T Consensus 131 ~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~------~ 200 (326)
T 2ghs_A 131 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTK------V 200 (326)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETT------T
T ss_pred CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECC------C
Confidence 1111 12 222567776432111111245688888 566554321 00011122222 45 57776322 2
Q ss_pred ceEEEEeCC--CC-c------eEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEc
Q 016416 251 TCGEEFDLE--TR-K------WRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 251 ~~v~~yd~~--~~-~------W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
..+++||.. ++ . +..+..... .+ ..++. -+|.+|+.....+.|.+||+....-..+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~----~p---~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKG----GM---DGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARY 266 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSS----EE---EEEEECTTSCEEEEEETTTEEEEECTTCCEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCC----CC---CeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEE
Confidence 468888875 44 2 222111000 00 01222 3578888764457899999954433333
No 208
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=91.86 E-value=7.4 Score=35.49 Aligned_cols=152 Identities=8% Similarity=0.003 Sum_probs=79.3
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++.+++.|+.+ ..+.+||..+++-...-..+........+.. ++++.+.|+.++ .+..||+.+.+.
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~ 248 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRFNVL 248 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTTTEE
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCCccE
Confidence 46777777654 3588999988764322111111112223333 667777776543 477899988654
Q ss_pred EEccCCCCCCCCcCCCCCEEEE-----ECCEEEEEecCCCeEEEEeCCCCceEEc-cCC---Cc----cc----------
Q 016416 264 RKIEGMYPNVNRAAQAPPLVAV-----VDNQLYAVEYLTNMVKKYDKLKNTWDVL-GRL---PV----RA---------- 320 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-----~~g~l~v~gg~~~~v~~yd~~~~~W~~v-~~~---~~----~~---------- 320 (390)
...-...... . ...++. .++.+++.|+..+.|.+||..+.+-... ... +. .+
T Consensus 249 ~~~~~~~~~~---~--v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 249 IRSWSFGDHA---P--ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp EEEEBCTTCE---E--EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred EEEEecCCCC---c--eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccccee
Confidence 3321111100 0 001111 1355666777777899999987653221 100 00 00
Q ss_pred cC--CCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 321 DL--SNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 321 ~~--~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.. +...-.+++..++++++.||.++ .|.+||..+
T Consensus 324 ~~~~~~~~v~~l~~~~~~~l~s~~~d~------~i~~wd~~~ 359 (437)
T 3gre_A 324 CGIRSLNALSTISVSNDKILLTDEATS------SIVMFSLNE 359 (437)
T ss_dssp CCCCSGGGGCCEEEETTEEEEEEGGGT------EEEEEETTC
T ss_pred cccccCCceEEEEECCceEEEecCCCC------eEEEEECCC
Confidence 00 00111233344788888888764 588999877
No 209
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=91.76 E-value=4.5 Score=35.93 Aligned_cols=128 Identities=14% Similarity=0.075 Sum_probs=63.3
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecC-----CCeEEEEeCCC
Q 016416 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYL-----TNMVKKYDKLK 307 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~-----~~~v~~yd~~~ 307 (390)
+|++|+.......+. ..++.++ +.+-...+.........-.....+++- +|+||+++.. ...|.+||+.+
T Consensus 27 ~g~~~v~~~~~~~~~--~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t 102 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPE--MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN 102 (343)
T ss_dssp TSCEEEEECGGGCCS--CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCc--eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC
Confidence 789998853221111 4566677 444333322111100001111223332 4899999743 47899999998
Q ss_pred CceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016416 308 NTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 308 ~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
++-...-.++.........-..+++. ++.+|+.....+ ....|.+||+.++ ..|..+.
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~---~~~~i~v~d~~~g-----~~~r~~~ 162 (343)
T 2qe8_A 103 NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD---DKAALIRVDLQTG-----LAARVLQ 162 (343)
T ss_dssp TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG---GGCEEEEEETTTC-----CEEEECT
T ss_pred CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC---CCCeEEEEECCCC-----CEEEEec
Confidence 87443222321110000010223333 578998853110 1235889998763 4577663
No 210
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=91.73 E-value=6 Score=34.23 Aligned_cols=113 Identities=17% Similarity=0.077 Sum_probs=54.5
Q ss_pred EEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCC-EEEEEcccccCCeEEEEECCCCcEeecCCCCCCC-
Q 016416 100 VYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGS-ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR- 177 (390)
Q Consensus 100 l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r- 177 (390)
++.......+..+|+.+.+....-.++.... ......+..++ .+|+.+. ....++++|+.+.+-...-..+.+-
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGP--TPMVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTT--CCCCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcCCCCC--CccceEEcCCCCEEEEEeC--CCCeEEEEECCCCCeEeeEEcCCccc
Confidence 3343456778889988765432211222000 00011233344 6777654 2457999999887653321111100
Q ss_pred ---cceeeeee--CCEEEEEeccC---CCCC--ccceEEEEECCCCcEE
Q 016416 178 ---CLFGSGSL--GSIAIIAGGSD---KNGH--VLKSAELYDSTTGRWE 216 (390)
Q Consensus 178 ---~~~~~~~~--~~~lyv~GG~~---~~~~--~~~~~~~yd~~t~~W~ 216 (390)
....++.- +..+|+..... .... ....+.+||..+++..
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 128 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR 128 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence 11122222 34777764210 0000 1367899999887654
No 211
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=91.73 E-value=4.4 Score=35.40 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=70.6
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++..++.|+.+ ..+.+||..+++-... +.........+.. ++.+.+.|+.++ .+..||+....-
T Consensus 76 dg~~l~s~s~D------~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D~------~i~vwd~~~~~~ 141 (319)
T 3frx_A 76 DGAYALSASWD------KTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRDK------TIKVWTIKGQCL 141 (319)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETTS------CEEEEETTSCEE
T ss_pred CCCEEEEEeCC------CEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCeE
Confidence 55666666654 3588999988764221 1111111222222 566666666543 366688765443
Q ss_pred EEccCCCCCCCCcCCCCCEEEE-------ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCC
Q 016416 264 RKIEGMYPNVNRAAQAPPLVAV-------VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGN 335 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-------~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~ 335 (390)
..+...... ...+.. .++.+++.++.-+.+..||..+.+-.. .+.... ..-.+++. -++
T Consensus 142 ~~~~~h~~~-------v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~h~----~~v~~~~~sp~g 208 (319)
T 3frx_A 142 ATLLGHNDW-------VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA--DFIGHN----SNINTLTASPDG 208 (319)
T ss_dssp EEECCCSSC-------EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE--EECCCC----SCEEEEEECTTS
T ss_pred EEEeccCCc-------EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe--eecCCC----CcEEEEEEcCCC
Confidence 333211110 001111 134456667777889999987754332 111111 01112222 256
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 336 ELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++++.|+.++ .|.+||..+
T Consensus 209 ~~l~s~~~dg------~i~iwd~~~ 227 (319)
T 3frx_A 209 TLIASAGKDG------EIMLWNLAA 227 (319)
T ss_dssp SEEEEEETTC------EEEEEETTT
T ss_pred CEEEEEeCCC------eEEEEECCC
Confidence 6777777653 466777765
No 212
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=91.53 E-value=2.1 Score=42.67 Aligned_cols=172 Identities=11% Similarity=0.015 Sum_probs=87.9
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCC----cEEEcCCCCCCC-cC
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTG----RWEMLPSMHSPR-RL 227 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~r-~~ 227 (390)
..+.+++..+.....+... .....++++ .++.||+.-.. ...+.++++.+. .-..+ +.... ..
T Consensus 386 ~~I~~id~~~~~~~~~~~~--~~~p~gla~d~~~~~Ly~sD~~------~~~I~~~~~~g~~~~~~~~~~--i~~~~~~P 455 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTV--ISRDIQAP 455 (699)
T ss_dssp TC-CEECTTSCCEECCSCC--CTTCCCCEEETTTTEEEECCTT------TTSBEEEESCCCCC-CCCCCB--CCSCC--C
T ss_pred cceEEEeCCCCcceeeecc--CcceEEEccccccCeEEEEecC------CCeEEEEecCCCCCCcceEEE--EeCCCCCc
Confidence 3566777776666544322 122233333 26789987432 345788888751 11111 11111 11
Q ss_pred ceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEecC-CCeEEE
Q 016416 228 CSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEYL-TNMVKK 302 (390)
Q Consensus 228 ~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg~-~~~v~~ 302 (390)
.+.++ .+++||+.-. ....|.++|+....-..+...... ....+++ .++.||+.... ...|++
T Consensus 456 ~glavD~~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~~~~------~P~giavDp~~g~ly~td~~~~~~I~~ 523 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFREQGS------KPRAIVVDPVHGFMYWTDWGTPAKIKK 523 (699)
T ss_dssp CCEECCCSSSBCEECCT------TTSCEEEEBSSSCCEEEECCCSSC------CCCCEECCSSSSCCEECCCSSSCCEEB
T ss_pred ceEEEEeeCCcEEEEec------cCCeEEEEecCCCceEEEEeCCCC------CcceEEEccCCCcEEEcccCCCCeEEE
Confidence 22332 4678999621 234678898877654444321110 0112443 36889988743 378999
Q ss_pred EeCCCCceEEcc--CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 303 YDKLKNTWDVLG--RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 303 yd~~~~~W~~v~--~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++....-..+. .+..+ .|.++-..+++||+.-... ..|++++++.
T Consensus 524 ~~~dG~~~~~l~~~~l~~P------nGlavd~~~~~LY~aD~~~------~~I~~~d~dG 571 (699)
T 1n7d_A 524 GGLNGVDIYSLVTENIQWP------NGITLDLLSGRLYWVDSKL------HSISSIDVNG 571 (699)
T ss_dssp CCSSSCCCCEESCSSCSSC------CCEEECTTTCCEEEEETTT------TEEEEECSSS
T ss_pred EeCCCCCeeEEEeCCCCCc------cEEEEeccCCEEEEEecCC------CeEEEEccCC
Confidence 988765433332 12111 1233222368899887533 2577777754
No 213
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=91.42 E-value=4.3 Score=35.65 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=74.3
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016416 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
+..++.|+.++ .+.+||..++.......+.........+.. +++..+.|+.+ ..+..||..+.+..
T Consensus 54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~ 121 (368)
T 3mmy_A 54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD------KTAKMWDLSSNQAI 121 (368)
T ss_dssp SEEEEEEETTS------EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEE
T ss_pred ceEEEEECCCC------cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC------CcEEEEEcCCCCce
Confidence 47777777543 478888876332221111111112222222 56666666543 35778999988765
Q ss_pred EccCCCCCCCCcCCCCCEEEE---ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEc
Q 016416 265 KIEGMYPNVNRAAQAPPLVAV---VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVG 341 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~---~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~G 341 (390)
.+...... ...+.. .++.+++.++..+.+.+||..+.+-...-..+. ...++....+.+++.+
T Consensus 122 ~~~~~~~~-------v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 187 (368)
T 3mmy_A 122 QIAQHDAP-------VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-------RCYCADVIYPMAVVAT 187 (368)
T ss_dssp EEEECSSC-------EEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-------CEEEEEEETTEEEEEE
T ss_pred eeccccCc-------eEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-------CceEEEecCCeeEEEe
Confidence 54321111 112222 367788888888899999988765222111111 1133334455555544
Q ss_pred CCCCCCCCeEEEeeecCCC
Q 016416 342 GQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 342 G~~~~~~~~~~i~~y~~~~ 360 (390)
+.. .+.+|+...
T Consensus 188 ~~~-------~i~~~~~~~ 199 (368)
T 3mmy_A 188 AER-------GLIVYQLEN 199 (368)
T ss_dssp GGG-------CEEEEECSS
T ss_pred CCC-------cEEEEEecc
Confidence 422 366787765
No 214
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=91.32 E-value=7.6 Score=38.25 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=73.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcc-eeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCL-FGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+++.|+. +..+.+||..+++-... +...... .+++. -++..++.|+.++ .+.++|.....-..+.
T Consensus 441 ~g~~l~sgs~--Dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 441 DGQFALSGSW--DGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRDR------TIKLWNTLGECKYTIS 510 (694)
T ss_dssp TSSEEEEEET--TSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCEEEEEC
T ss_pred CCCEEEEEeC--CCcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCCCEEEEEeCCC------EEEEEECCCCcceeec
Confidence 5566666653 45788999887654221 1111111 11221 2455666666543 4777887554322222
Q ss_pred CCCC-CCcCceEEEE--CC--EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEE
Q 016416 220 SMHS-PRRLCSGFFM--DG--KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAV 293 (390)
Q Consensus 220 ~~~~-~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~ 293 (390)
.... .+....++.. ++ .+++.|+.+ ..+..||+.+.+-...- ... ......++. -++++++.
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~--~~h----~~~v~~v~~spdg~~l~s 578 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLRSTL--AGH----TGYVSTVAVSPDGSLCAS 578 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEEEEE--CCC----SSCEEEEEECTTSSEEEE
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEEEEE--cCC----CCCEEEEEEeCCCCEEEE
Confidence 2111 2222233333 22 345555543 24777898876543221 110 000111222 25777888
Q ss_pred ecCCCeEEEEeCCCCc
Q 016416 294 EYLTNMVKKYDKLKNT 309 (390)
Q Consensus 294 gg~~~~v~~yd~~~~~ 309 (390)
|+.-+.|.+||..+.+
T Consensus 579 g~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 579 GGKDGVVLLWDLAEGK 594 (694)
T ss_dssp EETTSBCEEEETTTTE
T ss_pred EeCCCeEEEEECCCCc
Confidence 8888899999998775
No 215
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=91.12 E-value=12 Score=36.68 Aligned_cols=146 Identities=13% Similarity=0.111 Sum_probs=70.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCC-CCCCCcceeeeee--C--CEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEG-MNHPRCLFGSGSL--G--SIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
++..++.|+. +..+.+||.....-..+.. ....+....++.+ + ...++.|+.+ ..+.+||..++.-.
T Consensus 483 ~~~~l~s~s~--D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 483 DNRQIVSASR--DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLR 554 (694)
T ss_dssp TSSCEEEEET--TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEE
T ss_pred CCCEEEEEeC--CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEE
Confidence 4444555542 3567788865543222221 1111222222222 2 2355566544 34888998877643
Q ss_pred EcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEe
Q 016416 217 MLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE 294 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~g 294 (390)
.. +.........+.. ++++++.|+.++ .+..||+.+.+-. ..+.... ....++...+..++.+
T Consensus 555 ~~--~~~h~~~v~~v~~spdg~~l~sg~~Dg------~i~iwd~~~~~~~--~~~~~~~-----~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 555 ST--LAGHTGYVSTVAVSPDGSLCASGGKDG------VVLLWDLAEGKKL--YSLEANS-----VIHALCFSPNRYWLCA 619 (694)
T ss_dssp EE--ECCCSSCEEEEEECTTSSEEEEEETTS------BCEEEETTTTEEE--ECCBCSS-----CEEEEEECSSSSEEEE
T ss_pred EE--EcCCCCCEEEEEEeCCCCEEEEEeCCC------eEEEEECCCCceE--EEecCCC-----cEEEEEEcCCCcEEEE
Confidence 32 1111122222332 677777776543 4667888876532 2222110 1112333333334444
Q ss_pred cCCCeEEEEeCCCCce
Q 016416 295 YLTNMVKKYDKLKNTW 310 (390)
Q Consensus 295 g~~~~v~~yd~~~~~W 310 (390)
+..+.|.+||..+++-
T Consensus 620 ~~~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 620 ATEHGIKIWDLESKSI 635 (694)
T ss_dssp EETTEEEEEETTTTEE
T ss_pred EcCCCEEEEECCCCCC
Confidence 4456789999887754
No 216
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=91.08 E-value=8.6 Score=34.75 Aligned_cols=106 Identities=12% Similarity=-0.029 Sum_probs=53.8
Q ss_pred cEEEEEeC-CC----eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEccc-------ccCCeEEEEECCC
Q 016416 98 HWVYLVCD-PR----GWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRE-------LFDFAIWKYSLVF 164 (390)
Q Consensus 98 ~~l~~~~~-~~----~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~-------~~~~~~~~yd~~t 164 (390)
.++|+... .. .+..||+.+.+- +..+|..... ...+.. +..+|+..-. ...+.+.+||+.+
T Consensus 33 ~~~yv~~~~~~~~~~~v~v~D~~t~~~--~~~i~~g~~p----~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 33 RRSYINLPAHHSAIIQQWVLDAGSGSI--LGHVNGGFLP----NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CEEEEeCCcccCCccEEEEEECCCCeE--EEEecCCCCC----CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 45666642 22 567899887653 2333332111 112333 5678876421 1235688999987
Q ss_pred CcEe-ecCCCC-CCC-------cceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016416 165 RSWM-KCEGMN-HPR-------CLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 165 ~~W~-~~~~~~-~~r-------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
.+-. .++ ++ ..| .......-+..+|+..-. ..+.+.++| .+++-.
T Consensus 107 ~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-----~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 107 FLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFA-----AGPAVGLVV-QGGSSD 160 (373)
T ss_pred CcEEEEEE-CCCccccccCCCccceEECCCCCEEEEEecC-----CCCeEEEEE-CCCCEE
Confidence 6532 222 11 111 112222235677776321 135688899 887643
No 217
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=91.06 E-value=6.8 Score=33.57 Aligned_cols=185 Identities=8% Similarity=-0.027 Sum_probs=93.0
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEE----cccc-----------cCCeEEEE
Q 016416 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVF----GREL-----------FDFAIWKY 160 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~----Gg~~-----------~~~~~~~y 160 (390)
+..+|+... ...+..||+.+.+...+................+..++.+|+. |... ....++.+
T Consensus 79 dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 79 QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEE
Confidence 344666543 4678899998777665432211111111111223346778875 3210 13478999
Q ss_pred ECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECC-CCcE---EEcCCCCCCCcCceEEE-EC
Q 016416 161 SLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDST-TGRW---EMLPSMHSPRRLCSGFF-MD 234 (390)
Q Consensus 161 d~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W---~~~~~~~~~r~~~~~~~-~~ 234 (390)
|+. ++...+.... ....+++. -++++++.... ...+++||.. +++. ..+-..... ...+.+. -+
T Consensus 159 ~~~-g~~~~~~~~~--~~~~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~-~p~~i~~d~~ 228 (296)
T 3e5z_A 159 APD-GTLSAPIRDR--VKPNGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHFTVEPG-KTDGLRVDAG 228 (296)
T ss_dssp CTT-SCEEEEECCC--SSEEEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEECCSSS-CCCSEEEBTT
T ss_pred CCC-CCEEEeecCC--CCCccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEeeCCCC-CCCeEEECCC
Confidence 987 5554432211 11122222 24555544322 2468888876 5555 111111111 1112232 37
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--C-CEEEEEecCCCeEEEEeCCCCc
Q 016416 235 GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--D-NQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~-g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
|+||+.. ...+.+||+.......+.. +.. ...++.. + +.||+... +.+++|+++++.
T Consensus 229 G~l~v~~--------~~~v~~~~~~g~~~~~~~~-~~~-------~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~~ 288 (296)
T 3e5z_A 229 GLIWASA--------GDGVHVLTPDGDELGRVLT-PQT-------TSNLCFGGPEGRTLYMTVS--TEFWSIETNVRG 288 (296)
T ss_dssp SCEEEEE--------TTEEEEECTTSCEEEEEEC-SSC-------CCEEEEESTTSCEEEEEET--TEEEEEECSCCB
T ss_pred CCEEEEc--------CCeEEEECCCCCEEEEEEC-CCC-------ceeEEEECCCCCEEEEEcC--CeEEEEEccccc
Confidence 8888875 1357889998655444432 211 1123332 2 35777653 589999998765
No 218
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=91.04 E-value=9.1 Score=34.97 Aligned_cols=222 Identities=10% Similarity=-0.006 Sum_probs=119.0
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCC----cEeec
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFR----SWMKC 170 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~----~W~~~ 170 (390)
++|+ +.....+..+|+....+..+.+-.. ....+.. ++.||+.-- ....++++++... ....+
T Consensus 84 ~~ll-~~~~~~I~~i~l~~~~~~~~~~~~~-------~~~~l~~d~~~~~lywsD~--~~~~I~~~~~~g~~~~~~~~~~ 153 (400)
T 3p5b_L 84 AYLF-FTNRHEVRKMTLDRSEYTSLIPNLR-------NVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTV 153 (400)
T ss_dssp CEEE-EEETTEEEEECTTSCSCEEEECSCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEEC------CCCEEE
T ss_pred ceeE-EeccceeEEEccCCcceeEeccccC-------cceEEeeeeccCceEEEec--CCCeEEEEEcccCCCCCcceEE
Confidence 4444 3456788888988776655422111 1122332 578888643 2357888887652 12222
Q ss_pred CCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEE--ECCEEEEEeccc
Q 016416 171 EGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFF--MDGKFYVIGGMS 244 (390)
Q Consensus 171 ~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~ 244 (390)
... ......++++ .++.||+.-.. ...++++|+....-+.+. .+..| .+.++ .++.||+.--.
T Consensus 154 ~~~-~~~~p~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~- 222 (400)
T 3p5b_L 154 ISR-DIQAPDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG- 222 (400)
T ss_dssp ECS-SCSCEEEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECS-
T ss_pred EeC-CCCCcccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCC-
Confidence 110 1111223333 47899998532 346889998876554432 22222 22333 26899997311
Q ss_pred CCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccC
Q 016416 245 SPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADL 322 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~ 322 (390)
....|+++++....=..+..-.. .....+++- +++||+.+.....|+++|.+...-..+...+....
T Consensus 223 ----~~~~I~~~~~dG~~~~~~~~~~l------~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~- 291 (400)
T 3p5b_L 223 ----TPAKIKKGGLNGVDIYSLVTENI------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA- 291 (400)
T ss_dssp ----SSCCEEEEETTSCSCEEEECSSC------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTS-
T ss_pred ----CCCEEEEEeCCCCccEEEEECCC------CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCC-
Confidence 12458888887543333321110 011134444 68999999888999999987654444432111111
Q ss_pred CCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 323 SNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 323 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...++++.+++||+..-..+ .|+.+|+.+
T Consensus 292 ---~P~gl~v~~~~lywtd~~~~------~V~~~~~~~ 320 (400)
T 3p5b_L 292 ---HPFSLAVFEDKVFWTDIINE------AIFSANRLT 320 (400)
T ss_dssp ---SEEEEEEETTEEEEEESSSC------SEEEEESSS
T ss_pred ---CCEEEEEeCCEEEEecCCCC------eEEEEEcCC
Confidence 11456668999999874321 366677555
No 219
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=90.99 E-value=10 Score=35.43 Aligned_cols=181 Identities=16% Similarity=0.195 Sum_probs=93.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeec--CCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-----
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKC--EGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR----- 214 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~----- 214 (390)
++.+|+|.|. ..|.||..+++.... +-++ . .-++....+++|+|-|. ..+.||+.+++
T Consensus 158 ~~~~yfFkG~----~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~v~~gy 222 (460)
T 1qhu_A 158 DEGILFFQGN----RKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGEVPPGY 222 (460)
T ss_dssp SSEEEEEETT----EEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEETT--------EEEEECTTTCCCCTTC
T ss_pred CCeEEEEecc----cEEEEecccceeecccCCCCC--c-cchheeeCCceEEEECC--------EEEEEcCccCcccCCC
Confidence 6788888773 679999988765321 2222 2 22444457899999763 36777765543
Q ss_pred -------EEEcCCC------------------CCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceE--E
Q 016416 215 -------WEMLPSM------------------HSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR--K 265 (390)
Q Consensus 215 -------W~~~~~~------------------~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~--~ 265 (390)
|-.++.. ..+....-++. .+|++|++-|. ..+++|...+.+. .
T Consensus 223 Pk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~--------~yWR~~~~~~~~~p~~ 294 (460)
T 1qhu_A 223 PLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS--------HYWRLDTNRDGWHSWP 294 (460)
T ss_dssp CEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT--------EEEECTTGGGCCCCEE
T ss_pred CcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC--------EEEEEecCCCCcCccc
Confidence 2221110 01111222333 46899998553 3455655443221 1
Q ss_pred ccC-CCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCcc--------ccC-CCcceeEEEE-eC
Q 016416 266 IEG-MYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVR--------ADL-SNGWGLAFKA-CG 334 (390)
Q Consensus 266 ~~~-~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~--------~~~-~~~~~~~~~~-~~ 334 (390)
+.. .+.. +...-++...++++|++-| +.+++|+..+ ..+.+..-|.. ... ....-+++.. .+
T Consensus 295 Is~~Wpgl----P~~IDAAf~~~~~~yfFkG--~~yw~f~~~~-g~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~~~~~ 367 (460)
T 1qhu_A 295 IAHQWPQG----PSTVDAAFSWEDKLYLIQD--TKVYVFLTKG-GYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGS 367 (460)
T ss_dssp GGGTCTTS----CSSCSEEEEETTEEEEEET--TEEEEEECSB-SCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTC
T ss_pred hhhhccCC----CCCCcEEEEECCeEEEEeC--CEEEEEeCCC-CceecCCCCeEHHHhccCCCccccCcccEEEEeCCC
Confidence 111 1110 1112245567899999955 5789998653 12333221111 110 0011233322 36
Q ss_pred CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 335 NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 335 ~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++|++-|.. .+.||...
T Consensus 368 ~ktyfFkG~~--------ywryd~~~ 385 (460)
T 1qhu_A 368 SRLHIMAGRR--------LWWLDLKS 385 (460)
T ss_dssp CEEEEEETTE--------EEEEEGGG
T ss_pred CEEEEEECCE--------EEEEECCC
Confidence 8999998843 66777654
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=90.93 E-value=0.16 Score=46.34 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=59.7
Q ss_pred eeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCC
Q 016416 183 GSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 183 ~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
++.++.||+.+. + ..+..+|..+++ |+.-. .+ ...+.+..++++|+.++.+ ..++++|..+
T Consensus 6 ~v~~~~v~~gs~-d------g~v~a~d~~tG~~~W~~~~---~~-~~s~p~~~~g~~~v~~s~d------g~l~a~d~~t 68 (369)
T 2hz6_A 6 TLPETLLFVSTL-D------GSLHAVSKRTGSIKWTLKE---DP-VLQVPTHVEEPAFLPDPND------GSLYTLGSKN 68 (369)
T ss_dssp --CTTEEEEEET-T------SEEEEEETTTCCEEEEEEC---CC-SCCCC-----CCEEECTTT------CCEEEC----
T ss_pred eeeCCEEEEEcC-C------CEEEEEECCCCCEEEEecC---CC-ceecceEcCCCEEEEeCCC------CEEEEEECCC
Confidence 344677776532 2 358899998885 87643 11 1122234567788876433 3478899865
Q ss_pred C--ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEccCCCccccCCCcceeEEEEeCCE
Q 016416 261 R--KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRADLSNGWGLAFKACGNE 336 (390)
Q Consensus 261 ~--~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~ 336 (390)
+ .|..-...+... ...+ +...++.+| +|...+.++.+|+.+++ |+.-... . ...+..++.
T Consensus 69 G~~~w~~~~~~~~~~----~~sp-~~~~~~~v~-~g~~dg~v~a~D~~tG~~~w~~~~~~--~--------~~~~p~~~~ 132 (369)
T 2hz6_A 69 NEGLTKLPFTIPELV----QASP-CRSSDGILY-MGKKQDIWYVIDLLTGEKQQTLSSAF--A--------DSLSPSTSL 132 (369)
T ss_dssp -CCSEECSCCHHHHH----TTCS-CC-----CC-CCEEEEEEEEECCC--------------------------------
T ss_pred CceeeeeeccCcccc----ccCc-eEecCCEEE-EEeCCCEEEEEECCCCcEEEEecCCC--c--------ccccccCCE
Confidence 4 565322111100 0111 111345554 34444678899988764 6542211 0 011123555
Q ss_pred EEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016416 337 LLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 337 lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
||+.+ .+ ..+++||+.+ ++..|+.
T Consensus 133 v~~~~-~d------g~v~a~d~~t----G~~~W~~ 156 (369)
T 2hz6_A 133 LYLGR-TE------YTITMYDTKT----RELRWNA 156 (369)
T ss_dssp EEEEE-EE------EEEECCCSSS----SSCCCEE
T ss_pred EEEEe-cC------CEEEEEECCC----CCEEEeE
Confidence 55543 22 2588999988 4556874
No 221
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=90.92 E-value=13 Score=36.42 Aligned_cols=219 Identities=11% Similarity=0.046 Sum_probs=120.7
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCCcEeecCCC
Q 016416 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~ 173 (390)
+++| ++.....+...|+....-..+.+++... ....+.. ++.||+... ....++++++.......+-..
T Consensus 6 ~~~L-l~s~~~~I~~i~l~~~~~~~~~~~~~~~-----~~~~l~~d~~~~~lywtD~--~~~~I~r~~~~g~~~~~v~~~ 77 (628)
T 4a0p_A 6 EAFL-LFSRRADIRRISLETNNNNVAIPLTGVK-----EASALDFDVTDNRIYWTDI--SLKTISRAFMNGSALEHVVEF 77 (628)
T ss_dssp CCEE-EEEETTEEEEEESSCTTCEEECCCCSCS-----CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECS
T ss_pred CcEE-EEEeCCcEEEEECCCCCcceEEEcCCCC-----ceEEEEEECCCCEEEEEEC--CCCeEEEEECCCCCcEEEEeC
Confidence 3433 3345677888888765433322222111 1122332 578888643 245788888876555443221
Q ss_pred CCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEc--CCCCCCCcCceEEEE--CCEEEEEecccCCC
Q 016416 174 NHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML--PSMHSPRRLCSGFFM--DGKFYVIGGMSSPT 247 (390)
Q Consensus 174 ~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~ 247 (390)
.. ....++++ .+++||+.-.. ...++++++....-+.+ ..+..| ...++- +|.||+.-- +
T Consensus 78 g~-~~P~GlAvD~~~~~LY~tD~~------~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~---g- 143 (628)
T 4a0p_A 78 GL-DYPEGMAVDWLGKNLYWADTG------TNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEW---G- 143 (628)
T ss_dssp SC-SCCCEEEEETTTTEEEEEETT------TTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEEC---S-
T ss_pred CC-CCcceEEEEeCCCEEEEEECC------CCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCC---C-
Confidence 11 11123444 57899998432 35789999875543332 223222 233333 689999731 0
Q ss_pred ccCceEEEEeCCCCceEEccC-CCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccC-CCccccCC
Q 016416 248 VSLTCGEEFDLETRKWRKIEG-MYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGR-LPVRADLS 323 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~-~~~~~~~~ 323 (390)
....|+++++....-..+.. +.. ...+++- +++||+.....+.|+++|+....=+.+.. ++.+
T Consensus 144 -~~~~I~r~~~dG~~~~~l~~~~~~--------P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P---- 210 (628)
T 4a0p_A 144 -GKPKIDRAAMDGSERTTLVPNVGR--------ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHP---- 210 (628)
T ss_dssp -SSCEEEEEETTSCSCEEEECSCSS--------EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCE----
T ss_pred -CCCEEEEEeCCCCceEEEECCCCC--------cceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCc----
Confidence 13468888887665554432 111 1124433 68999999888999999987643233322 2211
Q ss_pred CcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 324 NGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++++.+++||+.--..+ .|+..|..+
T Consensus 211 ----~glav~~~~ly~tD~~~~------~I~~~dk~t 237 (628)
T 4a0p_A 211 ----FGLTQYQDYIYWTDWSRR------SIERANKTS 237 (628)
T ss_dssp ----EEEEEETTEEEEEETTTT------EEEEEETTT
T ss_pred ----eEEEEECCEEEEecCCCC------EEEEEECCC
Confidence 345667899998874321 355555544
No 222
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=90.59 E-value=10 Score=34.74 Aligned_cols=197 Identities=13% Similarity=0.044 Sum_probs=102.0
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCc-EeecCCC
Q 016416 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRS-WMKCEGM 173 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~~~ 173 (390)
+..||+... ...+..+|+.+..-..+....... ...+.. ++.+|+.... ....++++++.+.. ...+...
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~------~ia~~~~g~~l~~~d~~-~~~~I~~~d~~~~~~~~~~g~~ 213 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG------KPAVTKDKQRVYSIGWE-GTHTVYVYMKASGWAPTRIGQL 213 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC------BCEECTTSSEEEEEBSS-TTCEEEEEEGGGTTCEEEEEEC
T ss_pred CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC------ceeEecCCCcEEEEecC-CCceEEEEEcCCCceeEEeeec
Confidence 355777653 467888999876554432221111 012222 3456665432 12278899987653 2233111
Q ss_pred -C-CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC---CCCCCCcC-c-eEEEE--CCEEEEEec
Q 016416 174 -N-HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP---SMHSPRRL-C-SGFFM--DGKFYVIGG 242 (390)
Q Consensus 174 -~-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~-~-~~~~~--~~~iyv~GG 242 (390)
+ .....+++++. ++.||+... ...+++||+.++....+. ........ . ..+.. ++.||+.-.
T Consensus 214 ~~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 214 GSTFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp CTTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred cchhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 1 11112233332 689999421 236899999888755441 11111222 2 44444 589999732
Q ss_pred ccCCCccCceEEEEeCCCCceEEccCCC-C-CCC-----CcCCCCC-EEEE-ECCEEEEEec-CCCeEEEEeCCCCceEE
Q 016416 243 MSSPTVSLTCGEEFDLETRKWRKIEGMY-P-NVN-----RAAQAPP-LVAV-VDNQLYAVEY-LTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~-~~~-----~~~~~~~-~~~~-~~g~l~v~gg-~~~~v~~yd~~~~~W~~ 312 (390)
....|++||+... ...+.... . ... .+.-..+ .+++ -+|.||+.+. ....|.+||+.++.-..
T Consensus 287 ------~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 287 ------NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp ------TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred ------CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence 2356888987754 22222111 0 000 0000112 2333 2578999998 88999999977776665
Q ss_pred cc
Q 016416 313 LG 314 (390)
Q Consensus 313 v~ 314 (390)
+.
T Consensus 360 ~~ 361 (409)
T 3hrp_A 360 VA 361 (409)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=90.46 E-value=4.7 Score=34.98 Aligned_cols=185 Identities=11% Similarity=0.055 Sum_probs=92.3
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
+.||+.+. ....+++|++ +++....... ... ..+.+. -++++|+.... ...+.+||+. ++.+.+...
T Consensus 57 ~~l~~~d~--~~~~i~~~~~-~g~~~~~~~~-~~~-~~gl~~d~dG~l~v~~~~------~~~v~~~~~~-g~~~~~~~~ 124 (305)
T 3dr2_A 57 RTLVWSDL--VGRRVLGWRE-DGTVDVLLDA-TAF-TNGNAVDAQQRLVHCEHG------RRAITRSDAD-GQAHLLVGR 124 (305)
T ss_dssp TEEEEEET--TTTEEEEEET-TSCEEEEEES-CSC-EEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEECE
T ss_pred CEEEEEEC--CCCEEEEEeC-CCCEEEEeCC-CCc-cceeeECCCCCEEEEECC------CCEEEEECCC-CCEEEEEec
Confidence 44666542 2356888888 4444333221 111 112222 25778776321 2358888886 666554321
Q ss_pred CCC-C--cCceEEE-ECCEEEEE----ecccC-------CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-
Q 016416 222 HSP-R--RLCSGFF-MDGKFYVI----GGMSS-------PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV- 285 (390)
Q Consensus 222 ~~~-r--~~~~~~~-~~~~iyv~----GG~~~-------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~- 285 (390)
... + .....+. -+|+||+. |.... .......+++||+.+++++.+. ... ....++.
T Consensus 125 ~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~------~p~gl~~s 196 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD------HPNGLAFS 196 (305)
T ss_dssp ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES------SEEEEEEC
T ss_pred cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC------CCcceEEc
Confidence 111 1 1112222 37888885 32110 0011356899999888887664 110 0012333
Q ss_pred ECC-EEEEEecC-----CCeEEEEeCCCCceEE---ccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeee
Q 016416 286 VDN-QLYAVEYL-----TNMVKKYDKLKNTWDV---LGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSW 356 (390)
Q Consensus 286 ~~g-~l~v~gg~-----~~~v~~yd~~~~~W~~---v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y 356 (390)
-++ .||+.... .+.|++||...+.... +...+... . -+. .+.-+|+||+..+ . .|++|
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~--p--dgi-~~d~~G~lwv~~~-~-------gv~~~ 263 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL--P--DGF-CVDRGGWLWSSSG-T-------GVCVF 263 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC--C--CSE-EECTTSCEEECCS-S-------EEEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC--C--CeE-EECCCCCEEEecC-C-------cEEEE
Confidence 244 58887654 2689999987664321 11111110 0 112 2234677877652 1 38889
Q ss_pred cCCC
Q 016416 357 CPKS 360 (390)
Q Consensus 357 ~~~~ 360 (390)
+++.
T Consensus 264 ~~~g 267 (305)
T 3dr2_A 264 DSDG 267 (305)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 9865
No 224
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=89.91 E-value=18 Score=36.49 Aligned_cols=170 Identities=12% Similarity=0.057 Sum_probs=89.4
Q ss_pred eEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCC----cEEE-cC-CCCCCCcC
Q 016416 156 AIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTG----RWEM-LP-SMHSPRRL 227 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~----~W~~-~~-~~~~~r~~ 227 (390)
.+..++.....+..+... .....++++ .++.||+.-.. ...+.++++... .... +. .+..+
T Consensus 405 ~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~~lY~sD~~------~~~I~~~~l~g~~~~~~~~~vi~~~l~~P--- 473 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQAP--- 473 (791)
T ss_dssp SEEEECTTSCCCEEEECS--CSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEEEECSSCSCC---
T ss_pred ceeEeeccCCcceeeecC--CCceEEEeecccCCeeEEeecc------ceeEEEEeccCCCCCcceeEEEecCCCCc---
Confidence 455555555555443221 122223333 26889998542 245777777642 2222 22 22222
Q ss_pred ceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEec-CCCeEEE
Q 016416 228 CSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEY-LTNMVKK 302 (390)
Q Consensus 228 ~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg-~~~~v~~ 302 (390)
.++++ .+++||+.-. ....|+++|+....-..+...... ....+++ .+|.||+... ....|++
T Consensus 474 ~GLAvD~~~~~LY~tD~------~~~~I~v~~ldG~~~~~l~~~~l~------~P~gIaVDp~~g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGS------KPRAIVVDPVHGFMYWTDWGTPAKIKK 541 (791)
T ss_dssp CEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEECTTC------CEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred ceeeeeecCCcEEEEec------CCCeEEEEeCCCCeEEEEEeCCCC------CcceEEEecCCCCEEEecCCCCCeEEE
Confidence 22333 3679999832 245788899887665544321110 0113444 3689999984 4478999
Q ss_pred EeCCCCceEEccC--CCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 303 YDKLKNTWDVLGR--LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 303 yd~~~~~W~~v~~--~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++....=..+.. +..+ .|.++-..+++||+.-... ..|++++++.
T Consensus 542 ~~~dG~~~~~lv~~~l~~P------~GLavD~~~~~LYwaD~~~------~~I~~~d~dG 589 (791)
T 3m0c_C 542 GGLNGVDIYSLVTENIQWP------NGITLDLLSGRLYWVDSKL------HSISSIDVNG 589 (791)
T ss_dssp EETTSCCEEEEECSSCSCE------EEEEEETTTTEEEEEETTT------TEEEEEETTS
T ss_pred EecCCCceEEEEeCCCCCc------eEEEEecCCCeEEEEeCCC------CcEEEEecCC
Confidence 9987765444322 2111 1233323478999996432 2577888765
No 225
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=89.83 E-value=3 Score=36.22 Aligned_cols=103 Identities=14% Similarity=0.001 Sum_probs=52.1
Q ss_pred ceEEEEECCCCcEEEcCCCCCCC-cCceEEE-ECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCC
Q 016416 203 KSAELYDSTTGRWEMLPSMHSPR-RLCSGFF-MDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA 279 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~-~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 279 (390)
..+.++|+.+++-...-..+... .....+. -++ .+|+.+.. ...+..||+.+.+-...-..+..... ...
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~-~~~ 83 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLSTPEER-VKS 83 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCBTTEE-EEC
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEcCCcccc-ccc
Confidence 45889999887654322222210 1122332 255 67776542 24588899988765432111110000 000
Q ss_pred CCEEEE-ECC-EEEEEec-----------CCCeEEEEeCCCCceEE
Q 016416 280 PPLVAV-VDN-QLYAVEY-----------LTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 280 ~~~~~~-~~g-~l~v~gg-----------~~~~v~~yd~~~~~W~~ 312 (390)
...++. -+| .+|+... ..+.+.+||..+.+...
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 112333 244 6666641 24789999998876543
No 226
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=89.46 E-value=10 Score=33.17 Aligned_cols=171 Identities=12% Similarity=0.043 Sum_probs=91.6
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCC----CcEEEc-C-CCCCCCc
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTT----GRWEML-P-SMHSPRR 226 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~-~-~~~~~r~ 226 (390)
+.+.++|+.+.....+-+ ......+.+.. ++.||+.... ...+.++|+.+ ..-+.+ . .+..+
T Consensus 10 ~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p-- 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQAP-- 79 (316)
T ss_dssp SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEEEECSSCSCC--
T ss_pred CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECC------CCcEEEEECCCCCCCcccEEEEeCCCCCc--
Confidence 457778887776544322 12222344433 6799998542 35688898876 222222 1 12222
Q ss_pred CceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCC-CeEE
Q 016416 227 LCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLT-NMVK 301 (390)
Q Consensus 227 ~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~-~~v~ 301 (390)
.+.++ .+++||+.-. ....|.++|+....-..+...... ....+++- ++.||+.+... ..|+
T Consensus 80 -~glavd~~~~~ly~~d~------~~~~I~~~~~~g~~~~~~~~~~~~------~P~~iavdp~~g~ly~~d~~~~~~I~ 146 (316)
T 1ijq_A 80 -DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGS------KPRAIVVDPVHGFMYWTDWGTPAKIK 146 (316)
T ss_dssp -CEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEECTTC------CEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred -CEEEEeecCCeEEEEEC------CCCEEEEEeCCCCceEEEEECCCC------CcceEEeCCCCCEEEEEccCCCCeEE
Confidence 23343 3789999732 235688898876543333211100 11134443 78999997543 7899
Q ss_pred EEeCCCCceEEccCCCccccCCCcceeEEEE--eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 302 KYDKLKNTWDVLGRLPVRADLSNGWGLAFKA--CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 302 ~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++++...=..+.... .. +-.+++. .+++||+.-... ..|+++|++.
T Consensus 147 ~~~~dG~~~~~~~~~~--~~----~P~gla~d~~~~~lY~~D~~~------~~I~~~d~dg 195 (316)
T 1ijq_A 147 KGGLNGVDIYSLVTEN--IQ----WPNGITLDLLSGRLYWVDSKL------HSISSIDVNG 195 (316)
T ss_dssp EEETTSCCEEEEECSS--CS----CEEEEEEETTTTEEEEEETTT------TEEEEEETTS
T ss_pred EEcCCCCCeEEEEECC--CC----CceEEEEeccCCEEEEEECCC------CeEEEEecCC
Confidence 9998765444332111 11 1123333 378999987533 2577888764
No 227
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.31 E-value=11 Score=33.16 Aligned_cols=152 Identities=11% Similarity=0.010 Sum_probs=75.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEE--Ec
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE--ML 218 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~ 218 (390)
++.+++.|+ .+..+.+||..+.+-.............+++. -++.+++.|+.++ .+.+||..++.-. .+
T Consensus 138 ~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg------~i~iwd~~~~~~~~~~~ 209 (343)
T 3lrv_A 138 NTEYFIWAD--NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG------ILDVYNLSSPDQASSRF 209 (343)
T ss_dssp -CCEEEEEE--TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS------CEEEEESSCTTSCCEEC
T ss_pred CCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC------EEEEEECCCCCCCccEE
Confidence 344555554 34578899988877643322221111112222 2677777777543 4889999887642 22
Q ss_pred CCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceE-EccCCCCCCCCcCCCCCEEEE-ECCEEEEEe
Q 016416 219 PSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-KIEGMYPNVNRAAQAPPLVAV-VDNQLYAVE 294 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~g 294 (390)
.. ........+.. ++...+.|+ ++ .+..||+.+.+-. .+..+..... ......++. .+|+.++.+
T Consensus 210 ~~--~h~~~v~~l~fs~~g~~l~s~~-~~------~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 210 PV--DEEAKIKEVKFADNGYWMVVEC-DQ------TVVCFDLRKDVGTLAYPTYTIPEF--KTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp CC--CTTSCEEEEEECTTSSEEEEEE-SS------BEEEEETTSSTTCBSSCCCBC-------CCEEEEECTTSSEEEEE
T ss_pred ec--cCCCCEEEEEEeCCCCEEEEEe-CC------eEEEEEcCCCCcceeecccccccc--cccceEEEECCCCCEEEEe
Confidence 11 01112222333 566556555 21 4778998875421 1111111000 000001222 246666665
Q ss_pred cC-CCeEEEEeC--CCCceEE
Q 016416 295 YL-TNMVKKYDK--LKNTWDV 312 (390)
Q Consensus 295 g~-~~~v~~yd~--~~~~W~~ 312 (390)
+. .+.+.+|+. ....|..
T Consensus 279 s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp ETTTTEEEEEEECTTTCSEEE
T ss_pred cCCCCcEEEEEEcccccceEe
Confidence 44 667777776 5567987
No 228
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=89.05 E-value=4.2 Score=37.37 Aligned_cols=103 Identities=7% Similarity=0.010 Sum_probs=50.8
Q ss_pred EEEEeccCCCCCccceEEEEECCCCc---EEE--cCCCCCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCC
Q 016416 189 AIIAGGSDKNGHVLKSAELYDSTTGR---WEM--LPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 189 lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~--~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
+++.|+.++ .+.+||..++. +.. .............+.. ++.+++.|+.+ ..+..||+.+
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTC
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCC
Confidence 666666543 37889987632 211 1111111111222222 45666666543 3577899886
Q ss_pred Cc-eEEccCCCCCCCCcCCCCCEEEEE-CC-EEEEEecCCCeEEEEeCCC
Q 016416 261 RK-WRKIEGMYPNVNRAAQAPPLVAVV-DN-QLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 261 ~~-W~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~v~gg~~~~v~~yd~~~ 307 (390)
.. ...+..+... ......++.. ++ .+++.|+..+.|.+||..+
T Consensus 264 ~~~~~~~~~~~~~----~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 264 NNTSKPSHTVDAH----TAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp SCSSSCSEEEECC----SSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCcceeEeecC----CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 52 1111111110 0001112222 23 4788888888999999876
No 229
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=89.02 E-value=12 Score=33.40 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCEEEEEec----------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeee
Q 016416 287 DNQLYAVEY----------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSW 356 (390)
Q Consensus 287 ~g~l~v~gg----------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y 356 (390)
++++|+... ..+.|++||.++.+ .+..++... . ++.++..-+.+||+.++ ..|.+|
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~-p---~~ia~spdg~~l~v~n~--------~~v~v~ 330 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD-A---LSMTIDQQRNLMLTLDG--------GNVNVY 330 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT-C---CEEEEETTTTEEEEECS--------SCEEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC-e---eEEEECCCCCEEEEeCC--------CeEEEE
Confidence 478998753 13589999988875 444444333 1 23333333567777664 147789
Q ss_pred cCCCCCCCCCCce--EEecccCccCeEEeee
Q 016416 357 CPKSGVNNGTLDW--KVLAEKQHVGVFVYNC 385 (390)
Q Consensus 357 ~~~~~~~~~~~~W--~~~~~~p~~~~~~~~~ 385 (390)
|.++ + +.++..+..+..+...
T Consensus 331 D~~t--------~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 331 DISQ--------PEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp ECSS--------SSCEEEEEETTSCSSEEEE
T ss_pred ECCC--------CcceeeEEeccCCCCcEEE
Confidence 8865 6 7777754444444433
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=88.91 E-value=11 Score=32.65 Aligned_cols=195 Identities=10% Similarity=0.092 Sum_probs=96.6
Q ss_pred ccEEEEEeCCCeeEEEecC-CCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCc--EeecCC
Q 016416 97 EHWVYLVCDPRGWEAFDPM-KKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRS--WMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~-~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~ 172 (390)
+..+|+......+++||+. ...|..-...+. . ...+.. ++.||+... ...++.||+. ++ |.....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~---~----~~~~~~~~g~l~vgt~---~~~l~~~d~~-g~~~~~~~~~ 175 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAI---Y----ATPIVSEDGTIYVGSN---DNYLYAINPD-GTEKWRFKTN 175 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCC---C----SCCEECTTSCEEEECT---TSEEEEECTT-SCEEEEEECS
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCce---e----eeeEEcCCCEEEEEcC---CCEEEEECCC-CCEeEEEecC
Confidence 5667776556778999988 335654322111 0 112233 566766432 3578899988 43 544321
Q ss_pred CCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCC-CcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCcc
Q 016416 173 MNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTT-GRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 173 ~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 249 (390)
... ....+. -++.+|+.. ..+..||... ..|+..... .. ..+.+.. +|.||+...
T Consensus 176 --~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~~--~~-~~~~~~~~~g~l~v~t~------- 233 (330)
T 3hxj_A 176 --DAI-TSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAGY--WT-VTRPAISEDGTIYVTSL------- 233 (330)
T ss_dssp --SCC-CSCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCSS--CC-CSCCEECTTSCEEEEET-------
T ss_pred --CCc-eeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccCC--cc-eeceEECCCCeEEEEcC-------
Confidence 111 112223 367777653 2378888432 247654221 11 1122222 557777531
Q ss_pred CceEEEEeCCCCc-eEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCCCeEEEEeCCCC-ceEEccCCCccccCCCcc
Q 016416 250 LTCGEEFDLETRK-WRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKN-TWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 250 ~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~-~W~~v~~~~~~~~~~~~~ 326 (390)
...+.+||+.... |..-..... .. ..+.. +|.||+.. ..+.+++||+..+ .|..- ++....
T Consensus 234 ~~gl~~~~~~g~~~~~~~~~~~~-------~~-~~~~~~~g~l~v~t-~~ggl~~~d~~g~~~~~~~--~~~~~~----- 297 (330)
T 3hxj_A 234 DGHLYAINPDGTEKWRFKTGKRI-------ES-SPVIGNTDTIYFGS-YDGHLYAINPDGTEKWNFE--TGSWII----- 297 (330)
T ss_dssp TTEEEEECTTSCEEEEEECSSCC-------CS-CCEECTTSCEEEEC-TTCEEEEECTTSCEEEEEE--CSSCCC-----
T ss_pred CCeEEEECCCCCEeEEeeCCCCc-------cc-cceEcCCCeEEEec-CCCCEEEECCCCcEEEEEE--cCCccc-----
Confidence 1347778875443 543221111 01 12333 67777653 3457999997544 46542 221111
Q ss_pred eeEEEE-eCCEEEEEc
Q 016416 327 GLAFKA-CGNELLVVG 341 (390)
Q Consensus 327 ~~~~~~-~~~~lyv~G 341 (390)
.+.+. .+++||+-+
T Consensus 298 -~~~~~d~~g~l~~gt 312 (330)
T 3hxj_A 298 -ATPVIDENGTIYFGT 312 (330)
T ss_dssp -SCCEECTTCCEEEEC
T ss_pred -cceEEcCCCEEEEEc
Confidence 12333 577888743
No 231
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=88.84 E-value=11 Score=32.74 Aligned_cols=143 Identities=10% Similarity=0.064 Sum_probs=70.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++..++.|+ .+..+.+||..+++-... +.........+.+ ++.+++.|+.++ .+.++|.....-..+.
T Consensus 76 dg~~l~s~s--~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D~------~i~vwd~~~~~~~~~~ 145 (319)
T 3frx_A 76 DGAYALSAS--WDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRDK------TIKVWTIKGQCLATLL 145 (319)
T ss_dssp TSSEEEEEE--TTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETTS------CEEEEETTSCEEEEEC
T ss_pred CCCEEEEEe--CCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCeEEEEe
Confidence 455555554 346788999988754221 1111111111222 456677776543 3778887654433321
Q ss_pred CCCCCCcCceEEEE--------CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE-EECCEE
Q 016416 220 SMHSPRRLCSGFFM--------DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQL 290 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--------~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~l 290 (390)
. .......+.. ++.+++.|+.+ ..+..||+.+.+-... +... ......++ .-+|++
T Consensus 146 ~---h~~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~--~~~h----~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 146 G---HNDWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEAD--FIGH----NSNINTLTASPDGTL 210 (319)
T ss_dssp C---CSSCEEEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEEE--ECCC----CSCEEEEEECTTSSE
T ss_pred c---cCCcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhhee--ecCC----CCcEEEEEEcCCCCE
Confidence 1 1111111111 23345555543 2467788876543221 1110 00001122 235777
Q ss_pred EEEecCCCeEEEEeCCCCc
Q 016416 291 YAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 291 ~v~gg~~~~v~~yd~~~~~ 309 (390)
++.|+.-+.|.+||..+.+
T Consensus 211 l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp EEEEETTCEEEEEETTTTE
T ss_pred EEEEeCCCeEEEEECCCCc
Confidence 7888888899999988765
No 232
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=88.76 E-value=11 Score=32.63 Aligned_cols=219 Identities=8% Similarity=-0.001 Sum_probs=99.7
Q ss_pred EEEEEeCCCeeEEEec-CCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCc-------Eee
Q 016416 99 WVYLVCDPRGWEAFDP-MKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRS-------WMK 169 (390)
Q Consensus 99 ~l~~~~~~~~~~~~d~-~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~-------W~~ 169 (390)
.++..+....+..+|. ...+...+...+... .-..+.. .+.+++.|+. ...+.+||..+.. ...
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~ 143 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANL-----GICRICKYGDDKLIAASW--DGLIEVIDPRNYGDGVIAVKNLN 143 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCCCCS-----CEEEEEEETTTEEEEEET--TSEEEEECHHHHTTBCEEEEESC
T ss_pred EEEEEcCCCeEEEEEeccCCceEeccccCCCC-----ceEEEEeCCCCEEEEEcC--CCeEEEEcccccccccccccCCe
Confidence 4555555677888998 777655543310110 0111221 1444444442 3577888876400 222
Q ss_pred cCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCC-Cc--EEEcCCCCCCCcCceEEEE--CCEEEEEeccc
Q 016416 170 CEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT-GR--WEMLPSMHSPRRLCSGFFM--DGKFYVIGGMS 244 (390)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~--W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 244 (390)
+..+.......++....+. ++.|+.+ ..+.+||..+ .. ...... +....-.+.+.. ++++++.|+.+
T Consensus 144 ~~~~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d 215 (342)
T 1yfq_A 144 SNNTKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp SSSSSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETT
T ss_pred eeEEeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecC
Confidence 2222222222233333445 5555432 3588999887 43 222111 111111122232 46777777653
Q ss_pred CCCccCceEEEEeCCCC-------ceEEccCCCC-CCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016416 245 SPTVSLTCGEEFDLETR-------KWRKIEGMYP-NVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~-------~W~~~~~~~~-~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
+ .+..||.... .-..+..... ............+.. ++++++.|+..+.|.+||..+.+-..
T Consensus 216 g------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-- 287 (342)
T 1yfq_A 216 G------RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK-- 287 (342)
T ss_dssp S------EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE--
T ss_pred C------cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh--
Confidence 2 3444444432 1111111110 000000001112222 57777777777899999998776432
Q ss_pred CCCcc-ccCCCcceeEEEEeCCEEEEEcCCCC
Q 016416 315 RLPVR-ADLSNGWGLAFKACGNELLVVGGQRG 345 (390)
Q Consensus 315 ~~~~~-~~~~~~~~~~~~~~~~~lyv~GG~~~ 345 (390)
.+... . ..-.+++ .++++++.|+.++
T Consensus 288 ~~~~~h~----~~v~~~~-~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 288 NFAKFNE----DSVVKIA-CSDNILCLATSDD 314 (342)
T ss_dssp ECCCCSS----SEEEEEE-ECSSEEEEEEECT
T ss_pred hhhcccC----CCceEec-CCCCeEEEEecCC
Confidence 22221 1 1113344 7777888887664
No 233
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=88.72 E-value=14 Score=33.70 Aligned_cols=171 Identities=11% Similarity=0.031 Sum_probs=92.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCC----cEEE-cC-CCCCCCc
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTG----RWEM-LP-SMHSPRR 226 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~----~W~~-~~-~~~~~r~ 226 (390)
..+.+.++....+..+.+ ......+++.. ++.||+.--. ...+.++++... .... +. .+..
T Consensus 92 ~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~~--- 160 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTVISRDIQA--- 160 (400)
T ss_dssp TEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETT------TTEEEEEEC------CCCEEEECSSCSC---
T ss_pred ceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecC------CCeEEEEEcccCCCCCcceEEEeCCCCC---
Confidence 467777777766655432 12222334332 6899998432 345888888652 1222 22 1111
Q ss_pred CceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEe-cCCCeEE
Q 016416 227 LCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVE-YLTNMVK 301 (390)
Q Consensus 227 ~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~g-g~~~~v~ 301 (390)
..+.++ .+++||+.-.. ...|+++|+....-..+...... ....+++ .+|.||+.. +....|+
T Consensus 161 p~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~~~~------~P~~iavdp~~g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGS------KPRAIVVDPVHGFMYWTDWGTPAKIK 228 (400)
T ss_dssp EEEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEECSSC------CEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred cccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeCCCC------CcceEEEecccCeEEEEeCCCCCEEE
Confidence 123333 37899998432 34688899887665444321110 0113444 368999997 4457899
Q ss_pred EEeCCCCceEEcc--CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 302 KYDKLKNTWDVLG--RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 302 ~yd~~~~~W~~v~--~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++++...=..+. .+..+ .|.++-..+++||+.-... ..|+.+|++.
T Consensus 229 ~~~~dG~~~~~~~~~~l~~P------~glavd~~~~~lY~aD~~~------~~I~~~d~dG 277 (400)
T 3p5b_L 229 KGGLNGVDIYSLVTENIQWP------NGITLDLLSGRLYWVDSKL------HSISSIDVNG 277 (400)
T ss_dssp EEETTSCSCEEEECSSCSCE------EEEEEETTTTEEEEEETTT------TEEEEEETTS
T ss_pred EEeCCCCccEEEEECCCCce------EEEEEEeCCCEEEEEECCC------CEEEEEeCCC
Confidence 9998765433332 12111 1233322478999986532 2588888765
No 234
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=88.60 E-value=17 Score=34.45 Aligned_cols=178 Identities=11% Similarity=0.072 Sum_probs=85.6
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++..++.|+. ...+.+||.....-..+... ......+. -+++.++.|+.+ ..+.+||.....-..+.
T Consensus 355 ~g~~l~~~~~--dg~v~~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~~~~~d------~~v~~~~~~~~~~~~~~ 423 (577)
T 2ymu_A 355 DGQTIASASD--DKTVKLWNRNGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTLT 423 (577)
T ss_dssp TSSEEEEEET--TSEEEEEETTCCEEEEEECC---SSCEEEEEECTTSSCEEEEETT------SEEEEECTTCCEEEEEE
T ss_pred CCCEEEEEeC--CCEEEEEcCCCCEEEEecCC---CCCeEEEEECCCCCEEEEEeCC------CEEEEEeCCCCEEEEec
Confidence 4555555542 34677888654433333221 11111122 255666666543 34777885433322221
Q ss_pred CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE-EECCEEEEEecC
Q 016416 220 SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYL 296 (390)
Q Consensus 220 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~ 296 (390)
. .......+.+ ++++.+.++.+ ..+..||.....-..+...... ...++ .-++++++.++.
T Consensus 424 ~---~~~~v~~~~~s~d~~~l~~~~~d------~~v~~w~~~~~~~~~~~~~~~~-------v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 424 G---HSSSVWGVAFSPDDQTIASASDD------KTVKLWNRNGQLLQTLTGHSSS-------VRGVAFSPDGQTIASASD 487 (577)
T ss_dssp C---CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTSCEEEEEECCSSC-------EEEEEECTTSCEEEEEET
T ss_pred C---CCCCeEEEEECCCCCEEEEEcCC------CEEEEEECCCCEEEEEcCCCCC-------EEEEEEcCCCCEEEEEeC
Confidence 1 1111122222 56666666543 2467788765444433322111 01122 236777888877
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016416 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
.+.|.+||...+.-..+.. .. ..-.+++. -++++++.|+.++ .|.+||..
T Consensus 488 d~~i~iw~~~~~~~~~~~~---h~----~~v~~l~~s~dg~~l~s~~~dg------~v~lwd~~ 538 (577)
T 2ymu_A 488 DKTVKLWNRNGQLLQTLTG---HS----SSVRGVAFSPDGQTIASASDDK------TVKLWNRN 538 (577)
T ss_dssp TSEEEEEETTSCEEEEEEC---CS----SCEEEEEECTTSSCEEEEETTS------EEEEECTT
T ss_pred CCEEEEEcCCCCEEEEEeC---CC----CCEEEEEEcCCCCEEEEEECcC------EEEEEeCC
Confidence 7889999965433222221 11 01112222 2667777777653 57788864
No 235
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=88.54 E-value=15 Score=33.76 Aligned_cols=151 Identities=9% Similarity=-0.047 Sum_probs=74.8
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeec-CCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 143 SELLVFGRELFDFAIWKYSLVFRSWMKC-EGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
+.+++.|+. ...+.+||..+.+.... ..-..... .+++..++..++.|+.+ ..+.+||..+++....-..
T Consensus 210 ~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v-~~~~~sd~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 210 HQFIITSDR--DEHIKISHYPQCFIVDKWLFGHKHFV-SSICCGKDYLLLSAGGD------DKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp CEEEEEEET--TSCEEEEEESCTTCEEEECCCCSSCE-EEEEECSTTEEEEEESS------SEEEEEETTTCCEEEEEEC
T ss_pred CcEEEEEcC--CCcEEEEECCCCceeeeeecCCCCce-EEEEECCCCEEEEEeCC------CeEEEEECCCCcEeeeecc
Confidence 666666653 35788899877653221 11111111 11111166667777643 3588999988774332110
Q ss_pred C-----------------------CCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeC--C-CCceEEccCCCCCC
Q 016416 222 H-----------------------SPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDL--E-TRKWRKIEGMYPNV 273 (390)
Q Consensus 222 ~-----------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~--~-~~~W~~~~~~~~~~ 273 (390)
. ........+.. +++..++++.. ...+..||. . ..++..+..+....
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-----d~~i~iw~~~~~~~~~l~~~~~~~~~~ 355 (450)
T 2vdu_B 281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA-----TKCIIILEMSEKQKGDLALKQIITFPY 355 (450)
T ss_dssp HHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT-----CSEEEEEEECSSSTTCEEEEEEEECSS
T ss_pred hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC-----CCeEEEEEeccCCCCceeeccEeccCC
Confidence 0 00011112222 34444444321 235777887 3 34555554433321
Q ss_pred CCcCCCCCEEEEECCEEEEEecCC-------C--eEEEEeCCCCceEE
Q 016416 274 NRAAQAPPLVAVVDNQLYAVEYLT-------N--MVKKYDKLKNTWDV 312 (390)
Q Consensus 274 ~~~~~~~~~~~~~~g~l~v~gg~~-------~--~v~~yd~~~~~W~~ 312 (390)
....++...+.+++..+.. + .++.++.+++.|..
T Consensus 356 -----~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 398 (450)
T 2vdu_B 356 -----NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVV 398 (450)
T ss_dssp -----CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEE
T ss_pred -----ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEE
Confidence 1123555667777765432 2 66777888888863
No 236
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=88.08 E-value=15 Score=33.32 Aligned_cols=152 Identities=10% Similarity=0.022 Sum_probs=77.4
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
+.+++.|+. ...+.+||..+.+-...-..+........+.+ ++..++.|+.++ .+.+||..++.....-.
T Consensus 182 ~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~ 253 (437)
T 3gre_A 182 KSLLVALTN--LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRFNVLIRSWS 253 (437)
T ss_dssp CEEEEEEET--TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTTTEEEEEEB
T ss_pred CCEEEEEeC--CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCCccEEEEEe
Confidence 556666653 46789999987654222111101111222222 566777776543 48899998876533111
Q ss_pred CCCCCcCceEE-EE-----CCEEEEEecccCCCccCceEEEEeCCCCceEEc-cCC---CC-------C-------CC--
Q 016416 221 MHSPRRLCSGF-FM-----DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI-EGM---YP-------N-------VN-- 274 (390)
Q Consensus 221 ~~~~r~~~~~~-~~-----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~---~~-------~-------~~-- 274 (390)
.+.. .....+ .. ++.+.+.|+.+ ..+..||..+.+-... ... +. . ..
T Consensus 254 ~~~~-~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (437)
T 3gre_A 254 FGDH-APITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI 326 (437)
T ss_dssp CTTC-EEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred cCCC-CceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence 1111 111111 11 24455555433 2477788877653221 100 00 0 00
Q ss_pred CcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016416 275 RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 275 ~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
.+......++..++++++.|+..+.|.+||..+.+
T Consensus 327 ~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 327 RSLNALSTISVSNDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGG
T ss_pred ccCCceEEEEECCceEEEecCCCCeEEEEECCCcc
Confidence 00111223455588888888888999999988765
No 237
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=88.02 E-value=14 Score=32.84 Aligned_cols=201 Identities=11% Similarity=-0.068 Sum_probs=96.4
Q ss_pred eCCEEEEEccc-ccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCC-EEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016416 141 VGSELLVFGRE-LFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGS-IAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 141 ~~~~iy~~Gg~-~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
.+++.+++... .....++++|+.+++-..+...+..........-++ .|+.... ...++++|+.+++-+.+
T Consensus 45 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 45 RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-------GRNLMRVDLATLEENVV 117 (388)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-------TTEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-------CCeEEEEECCCCcceee
Confidence 34443333332 334579999999988877655432221111222244 4544432 13688999998876655
Q ss_pred CCCCCCCcCceEEE--ECCEEEEEecccC----------------CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016416 219 PSMHSPRRLCSGFF--MDGKFYVIGGMSS----------------PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 219 ~~~~~~r~~~~~~~--~~~~iyv~GG~~~----------------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
...+.......... -+++.++...... .......++.+|+.+++-..+...... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~------~~ 191 (388)
T 3pe7_A 118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW------LG 191 (388)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC------EE
T ss_pred eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc------cc
Confidence 44443321111111 2444333211000 011235788999998876655432211 00
Q ss_pred CEEEEE-CCEEEEE-e-cC----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCE-EEEEcCCCCCCCCeEE
Q 016416 281 PLVAVV-DNQLYAV-E-YL----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNE-LLVVGGQRGPEGENVV 352 (390)
Q Consensus 281 ~~~~~~-~g~l~v~-g-g~----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~ 352 (390)
.....- +|+.+++ . +. ...++.+|.++.....+........ .......-+|+ |+.+....+. ....
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~--~~~~ 265 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGES----CTHEFWVPDGSALVYVSYLKGS--PDRF 265 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEE----EEEEEECTTSSCEEEEEEETTC--CCEE
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcc----cccceECCCCCEEEEEecCCCC--Ccce
Confidence 112222 4553333 2 11 4589999998877766654221100 00111122444 5444432221 1235
Q ss_pred EeeecCCC
Q 016416 353 LNSWCPKS 360 (390)
Q Consensus 353 i~~y~~~~ 360 (390)
|++||+++
T Consensus 266 l~~~d~~~ 273 (388)
T 3pe7_A 266 IYSADPET 273 (388)
T ss_dssp EEEECTTT
T ss_pred EEEEecCC
Confidence 88999987
No 238
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=87.89 E-value=2.9 Score=38.74 Aligned_cols=144 Identities=9% Similarity=-0.020 Sum_probs=78.9
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEE---
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE--- 216 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~--- 216 (390)
++.||+.-.. ..+.++|+.++....+... ..+ ..++++ -++.||+....... ....+..++.. +.|.
T Consensus 149 ~g~Lyv~d~~---~~I~~id~~~~~v~~~~~~-~~~-P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~-g~~~~~~ 220 (430)
T 3tc9_A 149 HNHLYLVGEQ---HPTRLIDFEKEYVSTVYSG-LSK-VRTICWTHEADSMIITNDQNNN--DRPNNYILTRE-SGFKVIT 220 (430)
T ss_dssp EEEEEEEEBT---EEEEEEETTTTEEEEEECC-CSC-EEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGG-GTSCSEE
T ss_pred CCeEEEEeCC---CcEEEEECCCCEEEEEecC-CCC-cceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCC-Cceeeee
Confidence 3678876532 6889999999887665431 111 112222 23459998653321 12345666653 3332
Q ss_pred EcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECC-EEEE
Q 016416 217 MLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDN-QLYA 292 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g-~l~v 292 (390)
.++.+..+ +..++. +|.||+.-- ....+++||+.+..-..+...+... ....+++ -+| .||+
T Consensus 221 ~l~~~~~p---~giavdp~~g~lyv~d~------~~~~V~~~~~~~~~~~~~~~~~~~~-----~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 221 ELTKGQNC---NGAETHPINGELYFNSW------NAGQVFRYDFTTQETTPLFTIQDSG-----WEFHIQFHPSGNYAYI 286 (430)
T ss_dssp EEEECSSC---CCEEECTTTCCEEEEET------TTTEEEEEETTTTEEEEEEECSSSS-----CCEEEEECTTSSEEEE
T ss_pred eeccCCCc---eEEEEeCCCCEEEEEEC------CCCEEEEEECCCCcEEEEEEcCCCC-----cceeEEEcCCCCEEEE
Confidence 33322222 334433 678998732 2346899999877653333222210 1112333 244 4999
Q ss_pred EecCCCeEEEEeCCC
Q 016416 293 VEYLTNMVKKYDKLK 307 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~ 307 (390)
.....+.|+++|.+.
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 988888999977653
No 239
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.61 E-value=15 Score=32.66 Aligned_cols=153 Identities=8% Similarity=-0.081 Sum_probs=75.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee--CCE-EEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSI-AIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 231 (390)
..++++|..+..+..+.. ..+........+ +++ |++.....+ .....++++|+.+++.+.+...+. .. ...
T Consensus 216 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~ 289 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKG--QTDRVIYKANPETLENEEVMVMPP--CS-HLM 289 (396)
T ss_dssp CCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETT--TCCEEEEEECTTTCCEEEEEECCS--EE-EEE
T ss_pred ceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCC--CccceEEEEECCCCCeEEeeeCCC--CC-CCc
Confidence 578999998877766644 211111111222 444 444432221 112459999999888776644332 11 122
Q ss_pred EE-CCEEEEEecccCC----------CccCceEEEEeCCCCceEEccCCCCCC------CCcCCCCCEEEEECC-EEEEE
Q 016416 232 FM-DGKFYVIGGMSSP----------TVSLTCGEEFDLETRKWRKIEGMYPNV------NRAAQAPPLVAVVDN-QLYAV 293 (390)
Q Consensus 232 ~~-~~~iyv~GG~~~~----------~~~~~~v~~yd~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~g-~l~v~ 293 (390)
.- +|+++++.+.... ......++.+|+.+++...+....... .......+ ...-+| .|+..
T Consensus 290 s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~ 368 (396)
T 3c5m_A 290 SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHP-SFTPNDDGVLFT 368 (396)
T ss_dssp ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCC-EECTTSSEEEEE
T ss_pred cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCc-eEccCCCeEEEE
Confidence 23 7776666542210 012357889999888765554322100 00000111 222344 45544
Q ss_pred ec--CCCeEEEEeCCCCceEEcc
Q 016416 294 EY--LTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 294 gg--~~~~v~~yd~~~~~W~~v~ 314 (390)
.. ....++.+|..+..++.+.
T Consensus 369 s~~~~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 369 SDFEGVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp ECTTSSCEEEEEECCTTCC----
T ss_pred ecCCCCceEEEEEEccccccccc
Confidence 42 2346888888887777653
No 240
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=87.61 E-value=17 Score=33.50 Aligned_cols=108 Identities=10% Similarity=-0.096 Sum_probs=56.8
Q ss_pred ccEEEEEeCC-----CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEccc-------ccCCeEEEEECC
Q 016416 97 EHWVYLVCDP-----RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRE-------LFDFAIWKYSLV 163 (390)
Q Consensus 97 ~~~l~~~~~~-----~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~-------~~~~~~~~yd~~ 163 (390)
...+|+.... ..+..+|+.+.+-. ..++..... ...+.. +..+|+.... ...+.+.++|+.
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv--~~I~vG~~P----gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRIL--GMTDGGFLP----HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEE--EEEEECSSC----EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEE--EEEECCCCC----ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 3567777532 57888999877542 222221111 112222 4567776421 123578999999
Q ss_pred CCcEeecCCCC-CCC-----cceeee--eeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016416 164 FRSWMKCEGMN-HPR-----CLFGSG--SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 164 t~~W~~~~~~~-~~r-----~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
+++-...-+++ ..| ..+.++ .-+..+|+..-. ..+.+.++|..+++=
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-----~~~~VsVID~~t~kv 212 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-----PAPAVGVVDLEGKTF 212 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-----CCCeEEEEECCCCeE
Confidence 98753211111 111 112222 235688887321 135688999988764
No 241
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=87.53 E-value=14 Score=32.39 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=32.2
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCC
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
++.+++.|+.+ ..+.++|..+++.... +.........+.. +++..+.|+.++ .+..||+...
T Consensus 87 ~~~~l~s~s~D------~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~~~d~------~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWD------KTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDNRQILSAGAER------EIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETT------SEEEEEETTSSCEEEE--EECCCSCEEEEEECSSTTEEEEEETTS------CEEEEESSSC
T ss_pred CCCEEEEEcCC------CcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCCCEEEEEcCCC------EEEEEeccCC
Confidence 45555666543 3588899988764321 1111111222222 566666666543 4666787643
No 242
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=87.50 E-value=21 Score=34.39 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=92.0
Q ss_pred EEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC-C-
Q 016416 145 LLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP-S- 220 (390)
Q Consensus 145 iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~- 220 (390)
.++.|+. +..+.+||..+.+... .+.........+.+ ++++++.|+.++ .+.++|..+++....- .
T Consensus 162 ~l~s~s~--D~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D~------~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 162 RIISGSD--DNTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGDG------TIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp EEEEEET--TSCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEECBCT
T ss_pred EEEEEeC--CCeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECCC------cEEEEECCCCcEeeeeccc
Confidence 3444443 3567788866544322 12222222222222 567777777543 4788998877654321 1
Q ss_pred -CCC-CCc-CceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016416 221 -MHS-PRR-LCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 221 -~~~-~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
+.. .+. ....+.. +++..+.|+.+ ..+..+|+.+.+....-...... . .....+..++..++.++
T Consensus 232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 232 SLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVEKTIPVGTRI---E-DQQLGIIWTKQALVSIS 301 (611)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSG---G-GCEEEEEECSSCEEEEE
T ss_pred cccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeCCCCceeeeecCCCCc---c-ceeEEEEEcCCEEEEEe
Confidence 000 111 1122222 66766766654 35778999887764332211110 0 01123334666666676
Q ss_pred CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 296 LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 296 ~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..+.+..||+.+.+-... +.... ..-.+++. -+++.++.|+.++ .|.+||..+
T Consensus 302 ~d~~i~~~~~~~~~~~~~--~~gh~----~~v~~l~~spdg~~l~s~s~D~------~v~~Wd~~~ 355 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQV--RYGHN----KAITALSSSADGKTLFSADAEG------HINSWDIST 355 (611)
T ss_dssp TTCCEEEEETTTTEEEEE--ECCCS----SCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCcEEEEeCCCCCcceE--EcCCC----CCEEEEEEeCCCCEEEEEeCCC------cEEEEECCC
Confidence 778899999887653222 11110 11112222 2566666776553 366777765
No 243
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=87.44 E-value=11 Score=30.96 Aligned_cols=148 Identities=10% Similarity=0.059 Sum_probs=78.2
Q ss_pred eEEEeCCEEEEEcccccCCeEEEEECCCCcEe--ec----CCCCCCCcceeee-ee--CCEEEEEeccCCCCCccceEEE
Q 016416 137 ESLAVGSELLVFGRELFDFAIWKYSLVFRSWM--KC----EGMNHPRCLFGSG-SL--GSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 137 ~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~--~~----~~~~~~r~~~~~~-~~--~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
++...++.+|+|-| ..+|+++.....+. .+ +.+|. ...++ .. ++++|+|-| +.+|+
T Consensus 28 Ai~~~~g~~y~Fkg----~~~wr~~~~~~~~~p~~I~~~wp~Lp~---~iDAa~~~~~~~~iyfFkG--------~~~w~ 92 (207)
T 1pex_A 28 AITSLRGETMIFKD----RFFWRLHPQQVDAELFLTKSFWPELPN---RIDAAYEHPSHDLIFIFRG--------RKFWA 92 (207)
T ss_dssp EEEEETTEEEEEET----TEEEEECSSSSCCEEEEHHHHCTTSCS---SCCEEEEETTTTEEEEEET--------TEEEE
T ss_pred EEEeCCCcEEEEEC----CEEEEEeCCCcCCCceehhHhccCCCC---CccEEEEeccCCcEEEEcc--------CEEEE
Confidence 34457889999876 35677766543321 11 23332 22222 22 589999966 34677
Q ss_pred EECCCCcE---EEcCCCCCCC--cCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCC----CC
Q 016416 208 YDSTTGRW---EMLPSMHSPR--RLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNV----NR 275 (390)
Q Consensus 208 yd~~t~~W---~~~~~~~~~r--~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~----~~ 275 (390)
|+..+-.- +.+..+..+. ...-+|.. ++++|++-| +..++||..+++=. +.-|... ..
T Consensus 93 ~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~~~d--~gyPr~i~~~~~G 162 (207)
T 1pex_A 93 LNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHIMD--KDYPRLIEEDFPG 162 (207)
T ss_dssp ESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTEEC--SSCCCBHHHHSTT
T ss_pred EeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCcccc--CCCCccHHHcCCC
Confidence 76432111 2333322221 12233332 589999955 34788998765311 1111100 00
Q ss_pred cCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceE
Q 016416 276 AAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWD 311 (390)
Q Consensus 276 ~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~ 311 (390)
.+...-++...+|.+|.+-| +..++||..+++=.
T Consensus 163 ip~~iDaAf~~~g~~YfFkg--~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 163 IGDKVDAVYEKNGYIYFFNG--PIQFEYSIWSNRIV 196 (207)
T ss_dssp SCSCCSEEEEETTEEEEEET--TEEEEEETTTTEEE
T ss_pred CCCCccEEEEcCCcEEEEEC--CEEEEEeCCccEEe
Confidence 01112245557899999965 58999998776533
No 244
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=87.29 E-value=12 Score=32.01 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=71.0
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016416 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
+++.++|..+++...+-.+..+...-..+.. +++..+.|+.++ .+..+|..+++-........ ..
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~~~~~~h~-------~~ 111 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMTSHS-------AR 111 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEEECCS-------SC
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeEEEecCcc-------ce
Confidence 4588999999887654333322222223332 667777776543 47778988876432211111 11
Q ss_pred CEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 281 PLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 281 ~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
......++.+.+.|+..+.+..++..+....... +...... ........+++.++.|+.++ .|.+||..+
T Consensus 112 ~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~ 181 (318)
T 4ggc_A 112 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT-LSGHSQE---VCGLRWAPDGRHLASGGNDN------LVNVWPSAP 181 (318)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE-EECCSSC---EEEEEECTTSSEEEEEETTS------CEEEEESSC
T ss_pred EEEeecCCCEEEEEecCCceEeeecCCCceeEEE-EcCccCc---eEEEEEcCCCCEEEEEecCc------ceeEEECCC
Confidence 1234455666777777777878877665433221 1111100 00112223556666666553 367888776
No 245
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=85.81 E-value=8 Score=32.23 Aligned_cols=59 Identities=19% Similarity=0.078 Sum_probs=37.7
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEE----cc-CCCcc-----ccCCCcceeEEEE--eCCEEEEEcCCCCCCCCeEEEe
Q 016416 287 DNQLYAVEYLTNMVKKYDKLKNTWDV----LG-RLPVR-----ADLSNGWGLAFKA--CGNELLVVGGQRGPEGENVVLN 354 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~W~~----v~-~~~~~-----~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~i~ 354 (390)
++++|++-| +..|+||..+++-.. |. .+|.. .. .. -++.. .++++|++-|. ..+
T Consensus 127 ~gk~yfFkG--~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~---~i-DAAf~~~~~g~~YfFkG~--------~yw 192 (225)
T 3oyo_A 127 GKEVYLFKG--NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFES---GI-DACFASHKEPEAYLFKGQ--------NYV 192 (225)
T ss_dssp TTEEEEEET--TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTT---CC-SEEEECSSTTEEEEEETT--------EEE
T ss_pred CCcEEEEeC--CeEEEEECCCCeecCCCcchhhcCCCcccccCCC---Cc-CEEEEeCCCCEEEEEECC--------EEE
Confidence 689999966 589999987765543 22 12211 11 11 23334 48999999984 377
Q ss_pred eecCC
Q 016416 355 SWCPK 359 (390)
Q Consensus 355 ~y~~~ 359 (390)
.||..
T Consensus 193 r~d~~ 197 (225)
T 3oyo_A 193 RIDFT 197 (225)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 88887
No 246
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=85.72 E-value=29 Score=34.18 Aligned_cols=145 Identities=12% Similarity=0.003 Sum_probs=80.2
Q ss_pred CCeEEEEECCC------C--cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCC---cEEEcCCCC
Q 016416 154 DFAIWKYSLVF------R--SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG---RWEMLPSMH 222 (390)
Q Consensus 154 ~~~~~~yd~~t------~--~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~ 222 (390)
.+.++++|..+ . .+..+....... ......-++.+|+.+.... ....++++|..+. .|+.+.+-.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHS---PNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCcccceeccCCC
Confidence 56899999876 4 566654322111 1122334678888865432 2457899998876 487764321
Q ss_pred CCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCc-eEEccCCCCCCCCcCCCCCEEEEE--CC-EEEEEe-c-
Q 016416 223 SPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRK-WRKIEGMYPNVNRAAQAPPLVAVV--DN-QLYAVE-Y- 295 (390)
Q Consensus 223 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~--~g-~l~v~g-g- 295 (390)
....-...... ++.+++....++ ...++.+|+.+++ ...+.. +.. . ...+.. ++ .+++.. +
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~g~~~~~l~~-~~~----~---v~~~~~s~d~~~l~~~~ss~ 401 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHDLATGALLKIFPL-EVG----S---VVGYSGQKKDTEIFYQFTSF 401 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEETT----EEEEEEEETTTCCEEEEECC-CSS----E---EEEEECCTTCSEEEEEEECS
T ss_pred CCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEECCCCCEEEecCC-CCc----e---EEEEecCCCCCEEEEEEeCC
Confidence 11111223445 678887765442 3468889986654 444432 211 0 011111 33 455443 2
Q ss_pred -CCCeEEEEeCCCCc--eEEcc
Q 016416 296 -LTNMVKKYDKLKNT--WDVLG 314 (390)
Q Consensus 296 -~~~~v~~yd~~~~~--W~~v~ 314 (390)
....++.||..+++ .+.+.
T Consensus 402 ~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 402 LSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp SCCCEEEEEETTSSSCCCEEEE
T ss_pred CCCCEEEEEECCCCccceEEee
Confidence 34689999998877 66554
No 247
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=85.53 E-value=5.9 Score=37.98 Aligned_cols=98 Identities=11% Similarity=-0.025 Sum_probs=56.1
Q ss_pred EEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE
Q 016416 205 AELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA 284 (390)
Q Consensus 205 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 284 (390)
+.+||..++.-+.+...+. ......-+|+..++++.+..+ ...++.+|+.++++..+....... .....
T Consensus 134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~~~~~------~~~~~ 202 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSGEGSF------SSASI 202 (582)
T ss_dssp EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCSSCEE------EEEEE
T ss_pred ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecCCCcc------ccceE
Confidence 3478988888766643332 112223466655555443222 245899999999988775432210 00122
Q ss_pred EECCEEEEEecCCC--eEEEEeCCCCceEEc
Q 016416 285 VVDNQLYAVEYLTN--MVKKYDKLKNTWDVL 313 (390)
Q Consensus 285 ~~~g~l~v~gg~~~--~v~~yd~~~~~W~~v 313 (390)
.-+|+.++.+...+ .|+.||.++++...+
T Consensus 203 SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~ 233 (582)
T 3o4h_A 203 SPGMKVTAGLETAREARLVTVDPRDGSVEDL 233 (582)
T ss_dssp CTTSCEEEEEECSSCEEEEEECTTTCCEEEC
T ss_pred CCCCCEEEEccCCCeeEEEEEcCCCCcEEEc
Confidence 23565444544444 799999999887733
No 248
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.38 E-value=21 Score=32.23 Aligned_cols=220 Identities=10% Similarity=0.103 Sum_probs=110.9
Q ss_pred ccEEEEEeCCCeeEEEecCC--CceeeCCCCCCCcccCCCCeeEEEe----CCEEEEEcccc-cCCeEEEEECCCCcEee
Q 016416 97 EHWVYLVCDPRGWEAFDPMK--KKWMALPKIPCDECFNHADKESLAV----GSELLVFGREL-FDFAIWKYSLVFRSWMK 169 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~--~~W~~l~~~p~~~~~~~~~~~~~~~----~~~iy~~Gg~~-~~~~~~~yd~~t~~W~~ 169 (390)
+..||+.. ...+..++... .+|..+.+..... ....++. .+.||+.+... ....+++.+....+|+.
T Consensus 22 ~g~l~vgt-~~Gl~~~~~~~~g~~W~~~~~~~~~~-----~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~ 95 (394)
T 3b7f_A 22 PVMLLVAT-IKGAWFLASDPARRTWELRGPVFLGH-----TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTE 95 (394)
T ss_dssp CCEEEEEE-TTEEEEEEECTTSCSEEEEEEESTTS-----EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEE
T ss_pred CCEEEEEe-cCceEEEECCCCCCCceECCccCCCC-----ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceE
Confidence 34566654 34566777654 6898753111110 1122332 46777765321 11257777777789988
Q ss_pred cCCC---CCCC---------cceeeeee----CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC---CC-------
Q 016416 170 CEGM---NHPR---------CLFGSGSL----GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM---HS------- 223 (390)
Q Consensus 170 ~~~~---~~~r---------~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~------- 223 (390)
+... +... ...+++.. .+.+|+.+. ...+++.+-...+|+.+... |.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~ 168 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGG 168 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCC
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCccccccccc
Confidence 7532 1110 11122222 467776542 12367776677789987432 21
Q ss_pred ------CCcCceEEEE----CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC------CCCCcCCCCCEEEEEC
Q 016416 224 ------PRRLCSGFFM----DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP------NVNRAAQAPPLVAVVD 287 (390)
Q Consensus 224 ------~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~~~~~~~~~~~ 287 (390)
.......+.. .+.||+.... ..+++.+-...+|+.+..... ...........++...
T Consensus 169 ~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~ 241 (394)
T 3b7f_A 169 EQDGTPDGPKMHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHP 241 (394)
T ss_dssp C----CCCCEEEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECS
T ss_pred cccCCCCCCceeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECC
Confidence 0011122333 2567775432 236777777789998753211 0000001112233321
Q ss_pred ---CEEEEEecCCCeEEEEeCCCCceEEccC-CCccccCCCcceeEEEE---eCCEEEEEc
Q 016416 288 ---NQLYAVEYLTNMVKKYDKLKNTWDVLGR-LPVRADLSNGWGLAFKA---CGNELLVVG 341 (390)
Q Consensus 288 ---g~l~v~gg~~~~v~~yd~~~~~W~~v~~-~~~~~~~~~~~~~~~~~---~~~~lyv~G 341 (390)
+.||+.. ...|++++-...+|+.+.. ++.... .++..+.. ..+.||+..
T Consensus 242 ~~~~~l~vg~--~~gl~~s~D~G~tW~~~~~~l~~~~~---~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 242 AAPDILYQQN--HCGIYRMDRREGVWKRIGDAMPREVG---DIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp SSTTEEEEEE--TTEEEEEETTTTEEECGGGGSCTTTC---SCEEEEEECSSCTTCEEEEE
T ss_pred CCCCEEEEEc--CCeEEEeCCCCCcceECCCCCCCCCc---cceEEEEECCCCCCEEEEEe
Confidence 6777753 3568888888899999864 443110 11233333 246788864
No 249
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=84.83 E-value=4.3 Score=37.58 Aligned_cols=144 Identities=10% Similarity=0.027 Sum_probs=77.8
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CC-EEEEEecccCCCccCceEEEEeCCCCc
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DG-KFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
++.||+.--. ..+.++|+.++..+.+.. .......+.+ ++ .||+....... ....+..++.. ..
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNN--DRPNNYILTRE-SG 215 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGG-GT
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCC-Cc
Confidence 4788988431 678999999988776643 1112233333 34 48988543221 12345556653 33
Q ss_pred eE---EccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEE
Q 016416 263 WR---KIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNEL 337 (390)
Q Consensus 263 W~---~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~l 337 (390)
|. .++.+.. ...+++. +|.||+.....+.|++||+.+..-..+...+..... .+.++...++.|
T Consensus 216 ~~~~~~l~~~~~--------p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P---~gia~~pdG~~l 284 (430)
T 3tc9_A 216 FKVITELTKGQN--------CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE---FHIQFHPSGNYA 284 (430)
T ss_dssp SCSEEEEEECSS--------CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCC---EEEEECTTSSEE
T ss_pred eeeeeeeccCCC--------ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc---eeEEEcCCCCEE
Confidence 32 2222111 1224443 689999987778999999988765343333221111 112221224459
Q ss_pred EEEcCCCCCCCCeEEEeeecCC
Q 016416 338 LVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 338 yv~GG~~~~~~~~~~i~~y~~~ 359 (390)
|+..... ..|++++++
T Consensus 285 yv~d~~~------~~I~~~~~d 300 (430)
T 3tc9_A 285 YIVVVNQ------HYILRSDYD 300 (430)
T ss_dssp EEEETTT------TEEEEEEEE
T ss_pred EEEECCC------CEEEEEeCC
Confidence 9986432 146666654
No 250
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=84.72 E-value=21 Score=35.16 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=80.3
Q ss_pred CCeEEEEECCCC--cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCC---cEEEcCCCCCCCcCc
Q 016416 154 DFAIWKYSLVFR--SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG---RWEMLPSMHSPRRLC 228 (390)
Q Consensus 154 ~~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~ 228 (390)
.+.++++|..+. .|..+..-..... ......++.+|+....+. ....+...|+.+. .|+.+.+-.... .
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~ 331 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADV-SLVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPERQQV--L 331 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCE-EEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCCSSC--E
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceE-EEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecCCCCE--E
Confidence 358899997665 5666543221111 123345788988875432 2457889998764 387753322221 2
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-----CCEEEEEe-c--CCCeE
Q 016416 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-----DNQLYAVE-Y--LTNMV 300 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-----~g~l~v~g-g--~~~~v 300 (390)
.....++.|++....++ ...++.+|........+.. +... .+..+ ++.+++.. + ....+
T Consensus 332 ~~s~~g~~lv~~~~~~g----~~~l~~~d~~g~~~~~l~~-p~~~--------~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 332 TVHSGSGYLFAEYMVDA----TARVEQFDYEGKRVREVAL-PGLG--------SVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp EEEEETTEEEEEEEETT----EEEEEEECTTSCEEEEECC-SSSS--------EEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred EEEEECCEEEEEEEECC----eeEEEEEECCCCeeEEeec-CCCc--------eEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 33345667666543332 3467889988665555532 2210 11111 23444443 2 23789
Q ss_pred EEEeCCCCceEEccCC
Q 016416 301 KKYDKLKNTWDVLGRL 316 (390)
Q Consensus 301 ~~yd~~~~~W~~v~~~ 316 (390)
+.||..+++++.+...
T Consensus 399 ~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 399 YRFEPKSGAISLYRAS 414 (693)
T ss_dssp EEECTTTCCEEEEECC
T ss_pred EEEECCCCeEEEEEeC
Confidence 9999999888876543
No 251
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=84.37 E-value=33 Score=33.68 Aligned_cols=186 Identities=11% Similarity=-0.015 Sum_probs=94.8
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCC-------CccceEEEEECCCCcE--EEcCCCCCC
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNG-------HVLKSAELYDSTTGRW--EMLPSMHSP 224 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~-------~~~~~~~~yd~~t~~W--~~~~~~~~~ 224 (390)
..++++|..+++......++.... ...+. -+++.++++..+... .....+++++..++.- +.+...+..
T Consensus 147 ~~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~ 225 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD 225 (695)
T ss_dssp CEEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC
T ss_pred EEEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC
Confidence 589999999987641111221111 12222 255555555443221 1356699999887763 223222222
Q ss_pred -CcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec---CCCe
Q 016416 225 -RRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY---LTNM 299 (390)
Q Consensus 225 -r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg---~~~~ 299 (390)
....+... -+|+..++...... ....++.+|..+..|..+...... ....+..+|.+|+... ....
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~-------~~~~~~~~g~l~~~s~~~~~~~~ 296 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGVGA-------KYEVHAWKDRFYVLTDEGAPRQR 296 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECSSC-------CEEEEEETTEEEEEECTTCTTCE
T ss_pred CEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCCCc-------eEEEEecCCcEEEEECCCCCCCE
Confidence 11122222 25654444433321 234677778777788877543221 1122335677655543 3478
Q ss_pred EEEEeCCCCc---eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016416 300 VKKYDKLKNT---WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 300 v~~yd~~~~~---W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
|+.+|.++.+ |..+..-..... -..+...+++|++....++ ...++.++++
T Consensus 297 l~~~d~~~~~~~~~~~l~~~~~~~~-----l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~ 350 (695)
T 2bkl_A 297 VFEVDPAKPARASWKEIVPEDSSAS-----LLSVSIVGGHLSLEYLKDA----TSEVRVATLK 350 (695)
T ss_dssp EEEEBTTBCSGGGCEEEECCCSSCE-----EEEEEEETTEEEEEEEETT----EEEEEEEETT
T ss_pred EEEEeCCCCCccCCeEEecCCCCCe-----EEEEEEECCEEEEEEEECC----EEEEEEEeCC
Confidence 9999987754 887643211110 0123334888887775442 2346666653
No 252
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=84.21 E-value=15 Score=29.71 Aligned_cols=143 Identities=13% Similarity=0.132 Sum_probs=76.5
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCC--cE--eec----CCCCCCCcceeeee-e--CCEEEEEeccCCCCCccceEE
Q 016416 138 SLAVGSELLVFGRELFDFAIWKYSLVFR--SW--MKC----EGMNHPRCLFGSGS-L--GSIAIIAGGSDKNGHVLKSAE 206 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~--~W--~~~----~~~~~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~ 206 (390)
+...++.+|+|-|. .+|+++.... .. ..+ +.+|.. ..++. . ++++|+|-| +..|
T Consensus 12 i~~~~g~~yfFkg~----~~Wr~~~~~~~~~~~p~~Is~~w~glP~~---IDAa~~~~~~~~~yfFkG--------~~yw 76 (195)
T 1itv_A 12 IAEIGNQLYLFKDG----KYWRFSEGRGSRPQGPFLIADKWPALPRK---LDSVFEEPLSKKLFFFSG--------RQVW 76 (195)
T ss_dssp EEEETTEEEEEETT----EEEEECCSSSCCCEEEEEHHHHCTTSCSS---CSEEEECTTTCCEEEEET--------TEEE
T ss_pred EEEeCCEEEEEECC----EEEEEECCccccCCCcEEhhhccCCCCCC---ccEEEEECCCCeEEEEeC--------CEEE
Confidence 45578999998763 5777776542 11 111 233432 22232 2 688999966 3367
Q ss_pred EEECCCCcE-EEcCC--CCCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceE-----Ecc-CCCCCCCC
Q 016416 207 LYDSTTGRW-EMLPS--MHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-----KIE-GMYPNVNR 275 (390)
Q Consensus 207 ~yd~~t~~W-~~~~~--~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~-~~~~~~~~ 275 (390)
+|+..+-.- +.+.. +|......-+|. .++++|++-|. ..++||..+++=. .+. ..+. .
T Consensus 77 ~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~--------~ywr~d~~~~~~~~gyPr~i~~~w~G-v-- 145 (195)
T 1itv_A 77 VYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEVDRMFPG-V-- 145 (195)
T ss_dssp EEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEHHHHSTT-S--
T ss_pred EEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC--------EEEEEeCCcccccCCCccChhhcCCC-C--
Confidence 776432110 11222 222111222333 37899999552 4688998775421 111 1111 0
Q ss_pred cCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016416 276 AAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 276 ~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
+...-++...+|.+|.+-| +..++||..+..
T Consensus 146 -p~~idaa~~~~g~~Yffkg--~~y~~~~~~~~~ 176 (195)
T 1itv_A 146 -PLDTHDVFQFREKAYFCQD--RFYWRVSSRSEL 176 (195)
T ss_dssp -CSSCSEEEEETTEEEEEET--TEEEEEECCTTC
T ss_pred -CCCCCEEEEeCCeEEEEeC--CEEEEEECCccE
Confidence 1112245566899999966 578999987765
No 253
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=83.97 E-value=34 Score=33.59 Aligned_cols=71 Identities=13% Similarity=-0.021 Sum_probs=38.6
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCC---cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016416 139 LAVGSELLVFGRELFDFAIWKYSLVFR---SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
+..+++.++++.. ..++++|..++ .-..+...... .......-+++.++++.. ..++++|..++..
T Consensus 116 ~SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~~~~~-~~~~~~SPDG~~la~~~~-------~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 116 WSPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTHGEGF-ATDAKLSPKGGFVSFIRG-------RNLWVIDLASGRQ 184 (741)
T ss_dssp ECTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCCSSSC-EEEEEECTTSSEEEEEET-------TEEEEEETTTTEE
T ss_pred ECCCCCEEEEEeC---CcEEEEECCCCCcceEEEcccCCcc-cccccCCCCCCEEEEEeC-------CcEEEEecCCCCE
Confidence 3445554444433 68999999887 54443322111 111111224554444321 2699999999887
Q ss_pred EEcCC
Q 016416 216 EMLPS 220 (390)
Q Consensus 216 ~~~~~ 220 (390)
..+..
T Consensus 185 ~~~~~ 189 (741)
T 2ecf_A 185 MQLTA 189 (741)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 76643
No 254
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=83.70 E-value=22 Score=31.16 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=100.4
Q ss_pred CCEEEEEcccccCCeEEEEECCCCc---EeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRS---WMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~---W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
++.||..-- ....++++++.... +.....+..+ .+.++ .++.||+.-.. ...++++++....-+
T Consensus 46 ~~~lyw~D~--~~~~I~r~~~~g~~~~~~~~~~~l~~p---~glavd~~~g~ly~~d~~------~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 46 HGLIYWSDV--SEEAIKRTEFNKTESVQNVVVSGLLSP---DGLACDWLGEKLYWTDSE------TNRIEVSNLDGSLRK 114 (318)
T ss_dssp GTEEEEEET--TTTEEEEEETTSSSCCCEEEEECCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSCSCE
T ss_pred CCEEEEEEC--CCCcEEEEEccCCCceEEEEcCCCCCc---cEEEEEcCCCeEEEEECC------CCEEEEEECCCCcEE
Confidence 477887642 24578888887652 2111222222 13333 47899998432 356889998755433
Q ss_pred EcCCCCCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEE
Q 016416 217 MLPSMHSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLY 291 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~ 291 (390)
.+.. .....+..+++ +|.||+.--. ....|+++++....=+.+..... .....+++- +++||
T Consensus 115 ~l~~--~~~~~P~giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~~~~~~~l------~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 115 VLFW--QELDQPRAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSSRFIIINSEI------YWPNGLTLDYEEQKLY 181 (318)
T ss_dssp EEEC--SSCSSEEEEEEEGGGTEEEEEECS-----SSCEEEEEETTSCSCEEEECSSC------SCEEEEEEETTTTEEE
T ss_pred EEEe--CCCCCccEEEEeCCCCEEEEEecC-----CCCEEEEEEcCCCCeEEEEECCC------CCccEEEEeccCCEEE
Confidence 3311 11112233333 5899997311 13568889886543233211110 011134543 78999
Q ss_pred EEecCCCeEEEEeCCCCceEEccC--CCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 292 AVEYLTNMVKKYDKLKNTWDVLGR--LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~~W~~v~~--~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+...+.|+++|++...=+.+.. +..+ .++++.++.||+..-.. ..|.++++.+
T Consensus 182 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P--------~glav~~~~lywtd~~~------~~V~~~~~~~ 238 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTNRQAVVKGSLPHP--------FALTLFEDILYWTDWST------HSILACNKYT 238 (318)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSCCSCE--------EEEEEETTEEEEEETTT------TEEEEEETTT
T ss_pred EEECCCCEEEEEcCCCCceEEEecCCCCCc--------eEEEEeCCEEEEEecCC------CeEEEEECCC
Confidence 999888999999987654444432 1111 34556788999985422 2477777755
No 255
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=83.66 E-value=28 Score=32.40 Aligned_cols=175 Identities=13% Similarity=0.179 Sum_probs=91.5
Q ss_pred CCEEEEEcccccCCeEEEEECCCCc--E-eec----CCCCCCCcceeeee-------eCCEEEEEeccCCCCCccceEEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRS--W-MKC----EGMNHPRCLFGSGS-------LGSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~--W-~~~----~~~~~~r~~~~~~~-------~~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
++++|+|-| +.+|+|+-.... . +.+ +-+|. ...++. .++++|++-| +..|.
T Consensus 107 ~g~~yfFkG----~~yW~~~~~~~~~GYPk~I~~~fpGlp~---~IDAA~~~~~~~~~~~~~yfFkG--------~~yw~ 171 (460)
T 1qhu_A 107 HTSVYLIKG----DKVWVYTSEKNEKVYPKSLQDEFPGIPF---PLDAAVECHRGECQDEGILFFQG--------NRKWF 171 (460)
T ss_dssp TTEEEEEET----TEEEEECC-------CEEHHHHSTTCCS---SCCEEEEECBBTBSSSEEEEEET--------TEEEE
T ss_pred CCcEEEEec----cEEEEEeCCcccCCCCeEhhhccCCCCC---CeeEEEECCccCCCCCeEEEEec--------ccEEE
Confidence 589999877 367777533211 0 111 12222 122332 2678898866 24789
Q ss_pred EECCCCcEEEc--CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc------------eEEccCCC---
Q 016416 208 YDSTTGRWEML--PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK------------WRKIEGMY--- 270 (390)
Q Consensus 208 yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~------------W~~~~~~~--- 270 (390)
||..+++...- +.++. --++...+|++|++-|. ..++||..+.+ |..++...
T Consensus 172 yd~~~~~~~~~~w~gi~~---iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~v~~gyPk~is~~w~~c~~~g~~~ 240 (460)
T 1qhu_A 172 WDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQGN--------QFLRFNPVSGEVPPGYPLDVRDYFLSCPGRGHRS 240 (460)
T ss_dssp EETTTTEEEEECCTTSCC---CSEEEEETTEEEEEETT--------EEEEECTTTCCCCTTCCEEHHHHTSCCTTCCSCC
T ss_pred EecccceeecccCCCCCc---cchheeeCCceEEEECC--------EEEEEcCccCcccCCCCcchhhcccCCCCCCCcc
Confidence 99987765431 22332 23444568999999664 35678776543 21111100
Q ss_pred -----------CCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEE--cc----CCCccccCCCcceeEEEE
Q 016416 271 -----------PNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDV--LG----RLPVRADLSNGWGLAFKA 332 (390)
Q Consensus 271 -----------~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~--v~----~~~~~~~~~~~~~~~~~~ 332 (390)
+..+......-++.. .+|++|.+-| +..+++|...+.+.. |. .+|... -++..
T Consensus 241 ~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg--~~yWR~~~~~~~~~p~~Is~~WpglP~~I-------DAAf~ 311 (460)
T 1qhu_A 241 SHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG--SHYWRLDTNRDGWHSWPIAHQWPQGPSTV-------DAAFS 311 (460)
T ss_dssp -------CCCTTTTTCTTCCCCEEEECTTCCEEEEET--TEEEECTTGGGCCCCEEGGGTCTTSCSSC-------SEEEE
T ss_pred ccccCCccccccccccCCCCcCEEEecCCCeEEEEeC--CEEEEEecCCCCcCccchhhhccCCCCCC-------cEEEE
Confidence 000000011223333 4689999965 578888875543321 21 233222 23445
Q ss_pred eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016416 333 CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 333 ~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
.++++|+|-|.. +++|+..
T Consensus 312 ~~~~~yfFkG~~--------yw~f~~~ 330 (460)
T 1qhu_A 312 WEDKLYLIQDTK--------VYVFLTK 330 (460)
T ss_dssp ETTEEEEEETTE--------EEEEECS
T ss_pred ECCeEEEEeCCE--------EEEEeCC
Confidence 689999998743 6666654
No 256
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=83.25 E-value=29 Score=34.10 Aligned_cols=147 Identities=8% Similarity=-0.034 Sum_probs=76.3
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc---EEEcCCCCCCCcCceE
Q 016416 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR---WEMLPSMHSPRRLCSG 230 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~~~~r~~~~~ 230 (390)
...++++|..+..++.+..-... ....+.-++.+|+....+. ....++.+|..+.. |+.+-+-.....-...
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~ 325 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVGA--KYEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVPEDSSASLLSV 325 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSSC--CEEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE
T ss_pred ceEEEEEcCCCCceEEeecCCCc--eEEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE
Confidence 35777787767777766432211 1222224556666543321 24678899987765 8776332111111223
Q ss_pred EEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEec---CCCeEEEEeCC
Q 016416 231 FFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEY---LTNMVKKYDKL 306 (390)
Q Consensus 231 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg---~~~~v~~yd~~ 306 (390)
...++++++....++ ...++.+|+....-..+. ++...... .. ...-++ .+++... ....++.||..
T Consensus 326 ~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~~v~---~~-~~s~d~~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 326 SIVGGHLSLEYLKDA----TSEVRVATLKGKPVRTVQ-LPGVGAAS---NL-MGLEDLDDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp EEETTEEEEEEEETT----EEEEEEEETTCCEEEECC-CSSSSEEC---CC-BSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred EEECCEEEEEEEECC----EEEEEEEeCCCCeeEEec-CCCCeEEE---Ee-ecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 345888888766543 346778887654444443 22110000 00 001133 4444432 23578999999
Q ss_pred CCceEEcc
Q 016416 307 KNTWDVLG 314 (390)
Q Consensus 307 ~~~W~~v~ 314 (390)
+++.+.+.
T Consensus 397 ~g~~~~l~ 404 (695)
T 2bkl_A 397 TGKSELWA 404 (695)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEEe
Confidence 88876654
No 257
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=83.03 E-value=30 Score=32.19 Aligned_cols=164 Identities=12% Similarity=-0.019 Sum_probs=78.6
Q ss_pred CCEEEEEcccccCCeEEEEECCCC----cEeecCC---C----CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEEC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFR----SWMKCEG---M----NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDS 210 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~----~W~~~~~---~----~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 210 (390)
.+++|+-|.. ++.++++|..++ +-...-. + ...+-.+..+.-++ |||..--+..+.....+.++|.
T Consensus 95 r~~l~v~~l~--s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 95 RRFLIVPGLR--SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp SCEEEEEBTT--TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred CCEEEEccCC--CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 5667776653 468999998765 2222110 1 11121222333355 7775322212234578999999
Q ss_pred CCCcEEE-cC--CCCCCCcCceEE-EECCEEEEEec----------ccCCC---ccCceEEEEeCCCCceEEccCCCCCC
Q 016416 211 TTGRWEM-LP--SMHSPRRLCSGF-FMDGKFYVIGG----------MSSPT---VSLTCGEEFDLETRKWRKIEGMYPNV 273 (390)
Q Consensus 211 ~t~~W~~-~~--~~~~~r~~~~~~-~~~~~iyv~GG----------~~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~~ 273 (390)
.|.+=.. ++ ..+... ..... .-++++++... ..... ...+.+.+||..+.+ .++.++...
T Consensus 172 ~T~~v~~~~~~~~~~~~~-~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~ 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYL-AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGE 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCC-CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCT
T ss_pred CCCeEEEEEccCCCCccc-cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCC
Confidence 9876322 21 111111 11121 22444555442 11110 246789999998763 333332210
Q ss_pred C-CcCCCCCEEEE----ECCEEEEEec-----CCCeEEEEeCCCCceEEcc
Q 016416 274 N-RAAQAPPLVAV----VDNQLYAVEY-----LTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 274 ~-~~~~~~~~~~~----~~g~l~v~gg-----~~~~v~~yd~~~~~W~~v~ 314 (390)
. ..++ .+.. -+..+|+... ..+.|++|..+.++|+.+.
T Consensus 249 ~g~~P~---~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 249 ENRMAL---ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp TEEEEE---EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred CCCccc---eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 0 0010 0111 1346777766 6667777665567887644
No 258
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=82.74 E-value=9.4 Score=34.92 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=35.7
Q ss_pred CCEEEEEecCCCeEEEEeCCCCc-eEEccCCCccccCCCcceeEEEEe---CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 287 DNQLYAVEYLTNMVKKYDKLKNT-WDVLGRLPVRADLSNGWGLAFKAC---GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~-W~~v~~~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++.+++.++..+.|.+||..+.. ...+..+.... .....+.. +..+++.|+.++ .|.+||..+
T Consensus 243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~i~~~p~~~~~l~tg~~dg------~v~vwd~~~ 309 (430)
T 2xyi_A 243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-----AEVNCLSFNPYSEFILATGSADK------TVALWDLRN 309 (430)
T ss_dssp CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS-----SCEEEEEECSSCTTEEEEEETTS------EEEEEETTC
T ss_pred CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC-----CCeEEEEeCCCCCCEEEEEeCCC------eEEEEeCCC
Confidence 56778888888899999998652 11111111000 01122222 334788887664 477888765
No 259
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=81.98 E-value=26 Score=30.72 Aligned_cols=233 Identities=12% Similarity=0.064 Sum_probs=112.1
Q ss_pred ccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCC-C
Q 016416 97 EHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN-H 175 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~-~ 175 (390)
...+|+.+....++.-.-.-.+|..+.......... ...+....+.+|+.|. ...+++-.-.-.+|+.+.... .
T Consensus 46 ~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~--~~~i~~~~~~~~~~g~---~g~i~~S~DgG~tW~~~~~~~~~ 120 (327)
T 2xbg_A 46 RHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYR--FNSVSFQGNEGWIVGE---PPIMLHTTDGGQSWSQIPLDPKL 120 (327)
T ss_dssp SSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCE--EEEEEEETTEEEEEEE---TTEEEEESSTTSSCEECCCCTTC
T ss_pred CCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCcc--EEEEEecCCeEEEEEC---CCeEEEECCCCCCceECccccCC
Confidence 344555554444444444456898875321111111 1123334677887653 224444333356898876431 1
Q ss_pred CCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceE
Q 016416 176 PRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 176 ~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v 253 (390)
+-....++. -++.+|+.|.. + .+++-+-.-.+|+.+.... +...+.++.. ++.+|++|.. + .+
T Consensus 121 ~~~~~~i~~~~~~~~~~~~~~---g----~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~-G------~~ 185 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMITNV---G----AIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSSR-G------SF 185 (327)
T ss_dssp SSCEEEEEEEETTEEEEEETT---C----CEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEETT-S------SE
T ss_pred CCCeEEEEEECCCCEEEEeCC---c----cEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEECC-C------cE
Confidence 222233333 36788887641 1 1333222345798875422 2222333332 5667766522 1 23
Q ss_pred EEE-eCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCC-CCceEEccCC--CccccCCCccee
Q 016416 254 EEF-DLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKL-KNTWDVLGRL--PVRADLSNGWGL 328 (390)
Q Consensus 254 ~~y-d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~-~~~W~~v~~~--~~~~~~~~~~~~ 328 (390)
+.- |..-.+|+.+...... ....++. -++++|+++. .+.++..+.. ..+|+.+... +.... ..
T Consensus 186 ~~S~d~gG~tW~~~~~~~~~------~~~~~~~~~~g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~~~~~~~-----~~ 253 (327)
T 2xbg_A 186 YSTWEPGQTAWEPHNRTTSR------RLHNMGFTPDGRLWMIVN-GGKIAFSDPDNSENWGELLSPLRRNSVG-----FL 253 (327)
T ss_dssp EEEECTTCSSCEEEECCSSS------CEEEEEECTTSCEEEEET-TTEEEEEETTEEEEECCCBCTTSSCCSC-----EE
T ss_pred EEEeCCCCCceeECCCCCCC------ccceeEECCCCCEEEEeC-CceEEEecCCCCCeeEeccCCcccCCcc-----eE
Confidence 333 3335789987542221 1112222 3578887764 3456666433 5689987532 22110 12
Q ss_pred EEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecc
Q 016416 329 AFKAC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAE 374 (390)
Q Consensus 329 ~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~ 374 (390)
+++.. ++.+|++|+.. .++ ...+. ..+|+.+..
T Consensus 254 ~v~~~~~~~~~~~g~~g-------~i~-~S~Dg-----G~tW~~~~~ 287 (327)
T 2xbg_A 254 DLAYRTPNEVWLAGGAG-------ALL-CSQDG-----GQTWQQDVD 287 (327)
T ss_dssp EEEESSSSCEEEEESTT-------CEE-EESST-----TSSCEECGG
T ss_pred EEEecCCCEEEEEeCCC-------eEE-EeCCC-----CcccEEcCc
Confidence 23222 67899988632 122 22222 258998864
No 260
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=81.18 E-value=29 Score=34.40 Aligned_cols=146 Identities=10% Similarity=-0.060 Sum_probs=80.2
Q ss_pred CCeEEEEECCCC--c-EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCC--CcEEEcCCCCCCCcCc
Q 016416 154 DFAIWKYSLVFR--S-WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT--GRWEMLPSMHSPRRLC 228 (390)
Q Consensus 154 ~~~~~~yd~~t~--~-W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~r~~~ 228 (390)
.+.++++|..+. . |+.+......... .....++.+|+...... ....++++|..+ ..|+.+-+-.... -.
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-~~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~~-l~ 367 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWD-FVDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVVPESKDN-LE 367 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEE-EEEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEECCCSSE-EE
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEE-EEeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEecCCCCe-EE
Confidence 468899998876 6 7766542222211 22235677777754322 245689999887 5788764322111 11
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECC-EEEEEe-c--CCCeEEE
Q 016416 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDN-QLYAVE-Y--LTNMVKK 302 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g-~l~v~g-g--~~~~v~~ 302 (390)
.....++++++....++ ...++.+|+....-..+. ++... . ..... -++ .|++.. . ....++.
T Consensus 368 ~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~---~---v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 368 SVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVS-LPGIG---S---ASGLSGRPGDRHAYLSFSSFTQPATVLA 436 (741)
T ss_dssp EEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECB-CSSSC---E---EEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred EEEEECCEEEEEEEECC----EEEEEEEeCCCCceeecc-CCCCe---E---EEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 22345888888765543 345788887655444443 12110 0 00111 133 344432 2 2368999
Q ss_pred EeCCCCceEEccC
Q 016416 303 YDKLKNTWDVLGR 315 (390)
Q Consensus 303 yd~~~~~W~~v~~ 315 (390)
||..+++.+.+..
T Consensus 437 ~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 437 LDPATAKTTPWEP 449 (741)
T ss_dssp EETTTTEEEECSC
T ss_pred EECCCCcEEEEec
Confidence 9999988777654
No 261
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=79.85 E-value=41 Score=34.87 Aligned_cols=140 Identities=18% Similarity=0.095 Sum_probs=74.9
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEE-EEECCCCcEEEcCCCCCCCcCceEEE
Q 016416 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAE-LYDSTTGRWEMLPSMHSPRRLCSGFF 232 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~-~yd~~t~~W~~~~~~~~~r~~~~~~~ 232 (390)
...+++++..+.....+...+..+....... +++.+++++. ...++ +||..++.-+.+. ... .....+.
T Consensus 316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~--~~~-~~~~~~~ 385 (1045)
T 1k32_A 316 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFE--ENL-GNVFAMG 385 (1045)
T ss_dssp TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECC--CCC-CSEEEEE
T ss_pred cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEec--CCc-cceeeeE
Confidence 3478888887776655433222111111222 5554444432 24688 8999888776664 111 1222222
Q ss_pred E--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC----------CCeE
Q 016416 233 M--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL----------TNMV 300 (390)
Q Consensus 233 ~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~----------~~~v 300 (390)
. +|+..++++.+ ..++.+|+.+++-..+...... ........-+|+.+++++. ...+
T Consensus 386 ~SpDG~~la~~~~~------~~v~~~d~~tg~~~~~~~~~~~-----~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i 454 (1045)
T 1k32_A 386 VDRNGKFAVVANDR------FEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 454 (1045)
T ss_dssp ECTTSSEEEEEETT------SEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred ECCCCCEEEEECCC------CeEEEEECCCCceEEeccCCCC-----CccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence 2 66655555432 3688999998887655421111 0111233346665555432 2489
Q ss_pred EEEeCCCCceEEcc
Q 016416 301 KKYDKLKNTWDVLG 314 (390)
Q Consensus 301 ~~yd~~~~~W~~v~ 314 (390)
+.||..+.+...+.
T Consensus 455 ~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 455 HVYDMEGRKIFAAT 468 (1045)
T ss_dssp EEEETTTTEEEECS
T ss_pred EEEECCCCcEEEee
Confidence 99999988755544
No 262
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=78.87 E-value=37 Score=30.59 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=16.0
Q ss_pred CCEEEEEecCCCeEEEEeCCC
Q 016416 287 DNQLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~ 307 (390)
+|++++.++. +.|.+||..+
T Consensus 296 ~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 296 SGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp TSSEEEEEES-SEEEEEETTC
T ss_pred CCCEEEEeeC-CeEEEEeCCC
Confidence 5677777777 9999999876
No 263
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=78.46 E-value=31 Score=29.55 Aligned_cols=184 Identities=9% Similarity=-0.024 Sum_probs=86.0
Q ss_pred cEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEE----cccc-----------cCCeEEEEE
Q 016416 98 HWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVF----GREL-----------FDFAIWKYS 161 (390)
Q Consensus 98 ~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~----Gg~~-----------~~~~~~~yd 161 (390)
..+++... ...+..||+. .+...+................+..++.+|+. |-.. ....+++||
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 34555432 3567778875 44444322111111111111223346778874 3210 135789999
Q ss_pred CCCCcEeecCCCCCCCcceeeeee-C-CEEEEEeccCCCCCccceEEEEECCCCcEEE---cCCCCCCCcCceEEE-ECC
Q 016416 162 LVFRSWMKCEGMNHPRCLFGSGSL-G-SIAIIAGGSDKNGHVLKSAELYDSTTGRWEM---LPSMHSPRRLCSGFF-MDG 235 (390)
Q Consensus 162 ~~t~~W~~~~~~~~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~---~~~~~~~r~~~~~~~-~~~ 235 (390)
+.+++...+..+ . ...+.+.. + ..+|+....... .....+++||...+.... ....+... ....+. -+|
T Consensus 176 ~~~g~~~~~~~~--~-~p~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~-pdgi~~d~~G 250 (305)
T 3dr2_A 176 PDGSPLQRMADL--D-HPNGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGL-PDGFCVDRGG 250 (305)
T ss_dssp SSSCCCEEEEEE--S-SEEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSC-CCSEEECTTS
T ss_pred CCCCcEEEEecC--C-CCcceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCC-CCeEEECCCC
Confidence 988877665311 1 11122222 3 458887532110 012568889877554211 11111111 112222 367
Q ss_pred EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEecCCCeEEEEeC
Q 016416 236 KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEYLTNMVKKYDK 305 (390)
Q Consensus 236 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg~~~~v~~yd~ 305 (390)
+||+.. ...+.+||+....-..+.. +.. ...++. -++.||+... ..+++++.
T Consensus 251 ~lwv~~--------~~gv~~~~~~g~~~~~~~~-~~~-------~~~~~f~~d~~~L~it~~--~~l~~~~~ 304 (305)
T 3dr2_A 251 WLWSSS--------GTGVCVFDSDGQLLGHIPT-PGT-------ASNCTFDQAQQRLFITGG--PCLWMLPL 304 (305)
T ss_dssp CEEECC--------SSEEEEECTTSCEEEEEEC-SSC-------CCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred CEEEec--------CCcEEEECCCCCEEEEEEC-CCc-------eeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence 888753 1248889997665554432 211 111222 1346777643 46777654
No 264
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=78.31 E-value=52 Score=31.97 Aligned_cols=209 Identities=14% Similarity=0.033 Sum_probs=105.0
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE---eCCEEEEEcccccCCeEEEEECCCCc-EeecCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA---VGSELLVFGRELFDFAIWKYSLVFRS-WMKCEGM 173 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~---~~~~iy~~Gg~~~~~~~~~yd~~t~~-W~~~~~~ 173 (390)
..++++....++...|+....-......+... ....+. .++.||+.- .....++++++.... +..+-..
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-----~~~~ld~~~~~~~ly~sD--~~~~~I~r~~~~g~~~~~~v~~~ 81 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGKENATIVVGGLE-----DAAAVDFVFSHGLIYWSD--VSEEAIKRTEFNKTESVQNVVVS 81 (619)
T ss_dssp -CCEEEECSSBEEEECCC---------CBCCS-----CEEEEEEETTTTEEEEEE--TTTTEEEEEEC-----CEEEECS
T ss_pred CceEEEeccccEEEEeCCCCcceEEEEEcCCC-----ceEEEEEEeCCCEEEEEE--CCCCeEEEEEccCCCceEEEEeC
Confidence 34556666788888888654211111111100 011222 267888753 234577888876542 2222111
Q ss_pred CCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEc--CCCCCCCcCceEEE--ECCEEEEEecccCCC
Q 016416 174 NHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML--PSMHSPRRLCSGFF--MDGKFYVIGGMSSPT 247 (390)
Q Consensus 174 ~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~ 247 (390)
.. ....++++ .+++||+.-.. ...++++|+....-+.+ ..+..|+ ..++ .+|.||+.--.
T Consensus 82 ~~-~~P~GlAvD~~~~~ly~~d~~------~~~I~v~~~dG~~~~~l~~~~l~~P~---~Iavdp~~g~ly~tD~g---- 147 (619)
T 3s94_A 82 GL-LSPDGLACDWLGEKLYWTDSE------TNRIEVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWG---- 147 (619)
T ss_dssp SC-SCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSSCSCCC---CEEEETTTTEEEEEECS----
T ss_pred CC-CCcCeEEEEecCCEEEEEeCC------CCEEEEEECCCCCEEEEEeCCCCCCc---eEEEecCCCeEEEeccC----
Confidence 10 12224443 37899998532 35689999876543333 2333343 3343 36899997411
Q ss_pred ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEcc--CCCccccCC
Q 016416 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLG--RLPVRADLS 323 (390)
Q Consensus 248 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~--~~~~~~~~~ 323 (390)
....|++.++....-..+..... ....++++- +++||+.....+.|+++|.+...=..+. .++.+
T Consensus 148 -~~~~I~r~~~dG~~~~~l~~~~~------~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P---- 216 (619)
T 3s94_A 148 -EVPKIERAGMDGSSRFIIINSEI------YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP---- 216 (619)
T ss_dssp -SSCEEEEEETTSCSCEEEECSSC------SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------C----
T ss_pred -CCCEEEEEECCCCceEEEEeCCC------CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCc----
Confidence 12467888876544443321111 011134444 6899999988899999998764322222 12111
Q ss_pred CcceeEEEEeCCEEEEEcC
Q 016416 324 NGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 324 ~~~~~~~~~~~~~lyv~GG 342 (390)
.+++..+++||+..-
T Consensus 217 ----~gi~~~~~~ly~td~ 231 (619)
T 3s94_A 217 ----FALTLFEDILYWTDW 231 (619)
T ss_dssp ----CCEEESSSEEEEECT
T ss_pred ----eEEEEeCCEEEEecC
Confidence 235567788988864
No 265
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=78.17 E-value=68 Score=33.25 Aligned_cols=140 Identities=11% Similarity=-0.064 Sum_probs=71.2
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEE-EEeCCCCceEEccCCCCCCCCcCCCCC
Q 016416 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGE-EFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~-~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..+++++..++.-..+..-+..+....... +|+.+++++. ...++ .||..+.+-..+..... ....
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~~~~~------~~~~ 383 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFEENLG------NVFA 383 (1045)
T ss_dssp TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECCCCCC------SEEE
T ss_pred CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEecCCcc------ceee
Confidence 357888887777655432221011111113 6654444432 23677 89998887666541111 0001
Q ss_pred EEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCC----CCCCeEEEeeec
Q 016416 282 LVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRG----PEGENVVLNSWC 357 (390)
Q Consensus 282 ~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~----~~~~~~~i~~y~ 357 (390)
....-+|+.++++...+.++.||.++++-..+..-..... ...+ ..-+++.+++++..+ .......|++||
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v----~~~~-~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI----TDFT-ISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC----CCEE-ECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc----cceE-ECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 1222366766676666799999999887666542111110 1111 123555445544321 112234688888
Q ss_pred CCC
Q 016416 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
.++
T Consensus 459 ~~~ 461 (1045)
T 1k32_A 459 MEG 461 (1045)
T ss_dssp TTT
T ss_pred CCC
Confidence 776
No 266
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=77.59 E-value=56 Score=32.04 Aligned_cols=187 Identities=10% Similarity=-0.033 Sum_probs=94.5
Q ss_pred eEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCC----------CCccceEEEEECCCCcEE--EcCCCC
Q 016416 156 AIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKN----------GHVLKSAELYDSTTGRWE--MLPSMH 222 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~----------~~~~~~~~~yd~~t~~W~--~~~~~~ 222 (390)
.++++|..+++......... . ....+.. +++.++++..... ......+++++..++..+ .+...+
T Consensus 152 ~i~v~d~~tg~~~~~~~~~~-~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~ 229 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLERV-K-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP 229 (710)
T ss_dssp EEEEEETTTTEEEEEEEEEE-C-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred EEEEEECCCCCCCcccccCc-c-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC
Confidence 78999999988765321111 1 1112222 4443333333221 012456888999887632 221212
Q ss_pred C-CCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCC------C--ceEEccCCCCCCCCcCCCCCEEEEECCEEEE
Q 016416 223 S-PRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLET------R--KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYA 292 (390)
Q Consensus 223 ~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~------~--~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 292 (390)
. +........ -+|+..++...... .....++.+|..+ . .+..+....... ......-++.||+
T Consensus 230 ~~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~------~~~~s~dg~~l~~ 302 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGRYVLLSIREGC-DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE------YDYVTNEGTVFTF 302 (710)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECSS-SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC------EEEEEEETTEEEE
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEccC-CCccEEEEEECcccccccCCccceEEeeCCCCcE------EEEEeccCCEEEE
Confidence 1 221122222 25554444332211 1146788899876 4 577765432211 1123345677888
Q ss_pred Eec---CCCeEEEEeCCCC---ceEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 293 VEY---LTNMVKKYDKLKN---TWDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 293 ~gg---~~~~v~~yd~~~~---~W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+. ....|+.+|..+. .|+.+..-..... -..+... +++|++....++ ...|+++++.+
T Consensus 303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~ 368 (710)
T 2xdw_A 303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV-----LEWVACVRSNFLVLCYLHDV----KNTLQLHDLAT 368 (710)
T ss_dssp EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-----EEEEEEETTTEEEEEEEETT----EEEEEEEETTT
T ss_pred EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe-----EEEEEEEcCCEEEEEEEECC----EEEEEEEECCC
Confidence 764 2457999998875 5887643211100 0123334 778877765442 33577888754
No 267
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=77.50 E-value=36 Score=29.69 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=16.7
Q ss_pred CCEEEEEecCCCeEEEEeCCC
Q 016416 287 DNQLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~ 307 (390)
+|+.++.|+.-+.|.+||...
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSC
T ss_pred CCCEEEEEcCCCeEEEEECCC
Confidence 677777888888999999843
No 268
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=77.45 E-value=37 Score=29.87 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=37.4
Q ss_pred CCEEEEEecCCCe-EEEEeCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 287 DNQLYAVEYLTNM-VKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 287 ~g~l~v~gg~~~~-v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+|++++.|+.-+. +.+||..+.+-.. .+...... ..-.++.. -++++++.|+.++ .|.+||..+
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~~~~~~--~~~~g~h~--~~v~~~~~s~~~~~l~s~s~d~------~v~iw~~~~ 271 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTEDGVLVR--EFRRGLDR--ADVVDMKWSTDGSKLAVVSDKW------TLHVFEIFN 271 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTTCCEEE--EEECTTCC--SCEEEEEECTTSCEEEEEETTC------EEEEEESSC
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEE--EEEcCCCC--CcEEEEEECCCCCEEEEEECCC------EEEEEEccC
Confidence 6777777777787 9999998765332 22211000 11112222 2577777777653 588898876
No 269
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=76.44 E-value=37 Score=29.36 Aligned_cols=101 Identities=9% Similarity=-0.012 Sum_probs=52.6
Q ss_pred CeEEEEECCCCcE-eecCCCCCCCcceeeee-eCCEEEEEeccCCCCC--c-cceEEEEECCCCcEEEcCCCCCCCcCce
Q 016416 155 FAIWKYSLVFRSW-MKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGH--V-LKSAELYDSTTGRWEMLPSMHSPRRLCS 229 (390)
Q Consensus 155 ~~~~~yd~~t~~W-~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~--~-~~~~~~yd~~t~~W~~~~~~~~~r~~~~ 229 (390)
..++++|..+++. +.+.. + .....+. -++ +++.+....... . ...++.+| ++.++.+..- ....
T Consensus 152 ~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~ 220 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFY 220 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEE
T ss_pred ceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC----ccee
Confidence 5688999988877 55544 2 1122222 244 555554332111 1 45788888 7777765431 1222
Q ss_pred EEEECCE-EEEEecccC-CCccCceEEEEeCCCCceEEccC
Q 016416 230 GFFMDGK-FYVIGGMSS-PTVSLTCGEEFDLETRKWRKIEG 268 (390)
Q Consensus 230 ~~~~~~~-iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~ 268 (390)
...-+|+ |++.+.... .......++.+| ++++..+..
T Consensus 221 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 221 AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc
Confidence 2244665 444432221 111245788898 667766543
No 270
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=76.37 E-value=35 Score=29.04 Aligned_cols=108 Identities=12% Similarity=0.172 Sum_probs=55.5
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCC--cEEEcCCCCCCCcCceEEEE----CCEEEEEecccCCCccCceEEEEeCC
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTG--RWEMLPSMHSPRRLCSGFFM----DGKFYVIGGMSSPTVSLTCGEEFDLE 259 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~ 259 (390)
++.+++.|+.+ ..+.+||..++ .++.+..+.........+.. ++.+++.|+.++ .+..||+.
T Consensus 22 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg------~v~vwd~~ 89 (351)
T 3f3f_A 22 YGRHVATCSSD------QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK------TVKLWEED 89 (351)
T ss_dssp SSSEEEEEETT------SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEEC
T ss_pred CCCEEEEeeCC------CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC------eEEEEecC
Confidence 45556666543 24677776643 34443322222222233333 367777776543 36667776
Q ss_pred CC-------ceEEccCCCCCCCCcCCCCCEEEEE-C--CEEEEEecCCCeEEEEeCCCCc
Q 016416 260 TR-------KWRKIEGMYPNVNRAAQAPPLVAVV-D--NQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 260 ~~-------~W~~~~~~~~~~~~~~~~~~~~~~~-~--g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
+. .|..+..+..... ....++.. + +.+++.++..+.+.+||..+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKG----SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSS----CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred CCcccccccCcceeeeecccCC----ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 54 3343333222110 11122222 2 6677777778899999987653
No 271
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=76.30 E-value=72 Score=32.56 Aligned_cols=193 Identities=7% Similarity=-0.048 Sum_probs=89.5
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
++.+++.|+. +..+.+||..+.+-... ++....-..++...++..+.|+.+ ..+.++|..+++-...-..
T Consensus 28 dg~~lAsgs~--Dg~I~lw~~~~~~~~~~--~~~~~~V~~l~fspg~~L~S~s~D------~~v~lWd~~~~~~~~~~~~ 97 (902)
T 2oaj_A 28 TQNLLAIATV--TGEVHIYGQQQVEVVIK--LEDRSAIKEMRFVKGIYLVVINAK------DTVYVLSLYSQKVLTTVFV 97 (902)
T ss_dssp TTTEEEEEET--TSEEEEECSTTCEEEEE--CSSCCCEEEEEEETTTEEEEEETT------CEEEEEETTTCSEEEEEEC
T ss_pred CCCEEEEEeC--CCEEEEEeCCCcEEEEE--cCCCCCEEEEEEcCCCEEEEEECc------CeEEEEECCCCcEEEEEcC
Confidence 4445555542 34677777665543222 111111112222224444444432 4588899987764321111
Q ss_pred CCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEcc--CCC---CCCCCcCCCCCEEEEEC--CEEEE
Q 016416 222 HSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIE--GMY---PNVNRAAQAPPLVAVVD--NQLYA 292 (390)
Q Consensus 222 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~---~~~~~~~~~~~~~~~~~--g~l~v 292 (390)
+ .....+.. +++..+.|+.+ ..+..||+.+..-.... ... .....+......++..- +.+++
T Consensus 98 ~---~~V~~v~~sp~g~~l~sgs~d------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 98 P---GKITSIDTDASLDWMLIGLQN------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp S---SCEEEEECCTTCSEEEEEETT------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred C---CCEEEEEECCCCCEEEEEcCC------CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 1 11222222 55555555543 24677998887643111 000 00000111122344442 35777
Q ss_pred EecCCCeEEEEeCCCCceEEccCCC--cc-c---------cCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016416 293 VEYLTNMVKKYDKLKNTWDVLGRLP--VR-A---------DLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~~W~~v~~~~--~~-~---------~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
.|+..+.+ .||..+++-...-... .. . ..+...-.+++. -++..++.|+.++ .|.+||..
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg------~i~lWd~~ 241 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN------SLVFWDAN 241 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC------CEEEEETT
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC------eEEEEECC
Confidence 78777888 9999887644321111 00 0 000011112222 2677778887664 47788886
Q ss_pred C
Q 016416 360 S 360 (390)
Q Consensus 360 ~ 360 (390)
+
T Consensus 242 ~ 242 (902)
T 2oaj_A 242 S 242 (902)
T ss_dssp T
T ss_pred C
Confidence 6
No 272
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=75.95 E-value=39 Score=29.38 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=56.4
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
++..++.|+.++ .+.+||..++.-..+........-.+++. -++.+++.|+.++ .+..||+.+.+-.
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg------~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG------ILDVYNLSSPDQA 205 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS------CEEEEESSCTTSC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC------EEEEEECCCCCCC
Confidence 456677677543 48899998887644322221111222232 2677777776543 4778999877532
Q ss_pred --EccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCCCeEEEEeCCCCc
Q 016416 265 --KIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 265 --~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
.+.. . +......++.. +|..++.++ .+.|.+||..+.+
T Consensus 206 ~~~~~~-~-----h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 206 SSRFPV-D-----EEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV 246 (343)
T ss_dssp CEECCC-C-----TTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred ccEEec-c-----CCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence 2221 0 01011122222 456566655 4589999987754
No 273
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=75.71 E-value=62 Score=31.52 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=73.7
Q ss_pred cceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCC-ceEEccCCCCCCCCcCC
Q 016416 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETR-KWRKIEGMYPNVNRAAQ 278 (390)
Q Consensus 202 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~ 278 (390)
...++++|..+++-..+............+.. +|+..+++..+... ....+..+|+.+. ....+......... ..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~~~~~-~~ 311 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETDKHYV-EP 311 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEECSSCC-CC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccCCCeE-Cc
Confidence 46799999998886665432111112222222 66544443333211 2457888999988 66655321111000 00
Q ss_pred CCCEEEEE--CCEEEEEecC--CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe---CCEEEEEcCCCCCCCCeE
Q 016416 279 APPLVAVV--DNQLYAVEYL--TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC---GNELLVVGGQRGPEGENV 351 (390)
Q Consensus 279 ~~~~~~~~--~g~l~v~gg~--~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~ 351 (390)
.......- +|++++.+.. ...++.+|...+....+..-.... ...+.. ++.||+.+...+. ...
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v-------~~~~~~spdg~~l~~~~~~~~~--~~~ 382 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV-------TNFAGFDPKGTRLYFESTEASP--LER 382 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE-------EEEEEECTTSSEEEEEESSSCT--TCB
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE-------EeeeEEcCCCCEEEEEecCCCC--ceE
Confidence 01112233 7776665532 356788887777676664321111 111122 3467666654321 123
Q ss_pred EEeeecCCC
Q 016416 352 VLNSWCPKS 360 (390)
Q Consensus 352 ~i~~y~~~~ 360 (390)
.|+.+|.++
T Consensus 383 ~l~~~d~~~ 391 (706)
T 2z3z_A 383 HFYCIDIKG 391 (706)
T ss_dssp EEEEEETTC
T ss_pred EEEEEEcCC
Confidence 577888766
No 274
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=75.38 E-value=55 Score=30.76 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=84.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++..++.++. ...+.+||.....-..+.....+ ..+++. -+++.++.|+.+ ..+.+||.....-..+..
T Consensus 314 ~~~~l~t~~~--d~~i~~w~~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~~~~d------g~v~~~~~~~~~~~~~~~ 383 (577)
T 2ymu_A 314 DGQTIASASD--DKTVKLWNRNGQHLQTLTGHSSS--VWGVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTLTG 383 (577)
T ss_dssp TSSEEEEEET--TSCEEEEETTSCEEEEECCCSSC--EEEEEECTTSSEEEEEETT------SEEEEEETTCCEEEEEEC
T ss_pred CCCEEEEEeC--CCeEEEEeCCCCeeEEEeCCCCC--EEEEEECCCCCEEEEEeCC------CEEEEEcCCCCEEEEecC
Confidence 4455555542 34677788766554443321111 112222 255666666543 246778865443333221
Q ss_pred CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCC
Q 016416 221 MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLT 297 (390)
Q Consensus 221 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~ 297 (390)
.......+.+ +++..+.|+.+ ..+..||.....-..+...... ...++. -++++++.++..
T Consensus 384 ---~~~~v~~~~~s~dg~~l~~~~~d------~~v~~~~~~~~~~~~~~~~~~~-------v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 384 ---HSSSVRGVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTLTGHSSS-------VWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp ---CSSCEEEEEECTTSSCEEEEETT------SEEEEECTTCCEEEEEECCSSC-------EEEEEECTTSSEEEEEETT
T ss_pred ---CCCCeEEEEECCCCCEEEEEeCC------CEEEEEeCCCCEEEEecCCCCC-------eEEEEECCCCCEEEEEcCC
Confidence 1112222222 56666666543 2466787654333332221110 011222 356777777777
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016416 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
+.+..||.....-..+..-.... .+++ .-++++++.|+.++ .|.+||.
T Consensus 448 ~~v~~w~~~~~~~~~~~~~~~~v-------~~~~~spd~~~las~~~d~------~i~iw~~ 496 (577)
T 2ymu_A 448 KTVKLWNRNGQLLQTLTGHSSSV-------RGVAFSPDGQTIASASDDK------TVKLWNR 496 (577)
T ss_dssp SEEEEEETTSCEEEEEECCSSCE-------EEEEECTTSCEEEEEETTS------EEEEEET
T ss_pred CEEEEEECCCCEEEEEcCCCCCE-------EEEEEcCCCCEEEEEeCCC------EEEEEcC
Confidence 88999997665444332211111 1122 22566667666543 4666664
No 275
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=75.13 E-value=46 Score=29.76 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=50.0
Q ss_pred ceEEEE--ECCCCcEEEcCCC--C--CC-CcCceEEEE----CCEEEEEecccCCCccCceEEEEeC---CCCceE--Ec
Q 016416 203 KSAELY--DSTTGRWEMLPSM--H--SP-RRLCSGFFM----DGKFYVIGGMSSPTVSLTCGEEFDL---ETRKWR--KI 266 (390)
Q Consensus 203 ~~~~~y--d~~t~~W~~~~~~--~--~~-r~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~yd~---~~~~W~--~~ 266 (390)
+++.+| |+.++.++.+... | .. +...+.+.+ .+++|++-.... ..++.|++ ...+.+ .+
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-----G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-----GEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-----SEEEEEEEEECTTSCEEEEEE
T ss_pred CeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-----CeEEEEEEEeCCCCcccceEE
Confidence 456666 8889999998654 4 33 444445543 366666643332 13444444 343332 22
Q ss_pred cCCCCCCCCcCCCCCEEEEE---CCEEEEEecCCCeEEEEeCC
Q 016416 267 EGMYPNVNRAAQAPPLVAVV---DNQLYAVEYLTNMVKKYDKL 306 (390)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~---~g~l~v~gg~~~~v~~yd~~ 306 (390)
..++... .+-.+++ .++||+-... ..||+||.+
T Consensus 174 R~f~lgs------q~EgcvvDd~~g~Lyv~eEd-~GIw~~da~ 209 (355)
T 3amr_A 174 RAFKMNS------QTEGMAADDEYGRLYIAEED-EAIWKFSAE 209 (355)
T ss_dssp EEEECSS------CEEEEEEETTTTEEEEEETT-TEEEEEECS
T ss_pred EEecCCC------CcceEEEcCCCCeEEEeccc-ceEEEEeCC
Confidence 3332211 1123444 3788888765 459999954
No 276
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=74.66 E-value=59 Score=30.81 Aligned_cols=131 Identities=11% Similarity=-0.039 Sum_probs=66.2
Q ss_pred ceEEEEEC--CCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCC
Q 016416 203 KSAELYDS--TTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA 279 (390)
Q Consensus 203 ~~~~~yd~--~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 279 (390)
..++..+. .... ..+......+ ......++ .++++.+... .+..||+.+++-..+...+.
T Consensus 90 ~~l~~~~~~~~g~~-~~l~~~~~~~--~~~~s~dg~~~~~~s~~~~------~~~l~d~~~g~~~~l~~~~~-------- 152 (582)
T 3o4h_A 90 HALFKVNTSRPGEE-QRLEAVKPMR--ILSGVDTGEAVVFTGATED------RVALYALDGGGLRELARLPG-------- 152 (582)
T ss_dssp EEEEEEETTSTTCC-EECTTSCSBE--EEEEEECSSCEEEEEECSS------CEEEEEEETTEEEEEEEESS--------
T ss_pred eEEEEEeccCCCcc-ccccCCCCce--eeeeCCCCCeEEEEecCCC------CceEEEccCCcEEEeecCCC--------
Confidence 45777776 3332 2333222211 22334444 4555544322 23367888887766543222
Q ss_pred CCEEEEECCEEEEEec----CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEee
Q 016416 280 PPLVAVVDNQLYAVEY----LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNS 355 (390)
Q Consensus 280 ~~~~~~~~g~l~v~gg----~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~ 355 (390)
......-+|+..+++. ....++.+|..++++..+..-+... . .....-+|+.++.+..+ ....|++
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~-----~-~~~~SpDG~~l~~~~~~----~~~~i~~ 222 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSF-----S-SASISPGMKVTAGLETA----REARLVT 222 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEE-----E-EEEECTTSCEEEEEECS----SCEEEEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCcc-----c-cceECCCCCEEEEccCC----CeeEEEE
Confidence 1123345666555432 2257999999999988765322111 0 11112255544444322 2246889
Q ss_pred ecCCC
Q 016416 356 WCPKS 360 (390)
Q Consensus 356 y~~~~ 360 (390)
||.++
T Consensus 223 ~d~~~ 227 (582)
T 3o4h_A 223 VDPRD 227 (582)
T ss_dssp ECTTT
T ss_pred EcCCC
Confidence 99887
No 277
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=74.11 E-value=73 Score=31.62 Aligned_cols=250 Identities=14% Similarity=0.095 Sum_probs=122.7
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe----CCEEEEEccccc------CCeEEEEECCCCcE
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV----GSELLVFGRELF------DFAIWKYSLVFRSW 167 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~----~~~iy~~Gg~~~------~~~~~~yd~~t~~W 167 (390)
..+|+......+++.+-.-.+|..+...+............++. .+.||+..+... ...+++=.-.-.+|
T Consensus 36 ~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW 115 (737)
T 2cn3_A 36 DLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETW 115 (737)
T ss_dssp TCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSC
T ss_pred CEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCc
Confidence 56777665667888888888999976533211111111223333 357887754211 12344434445679
Q ss_pred eecCCC-CC-----CC-cceeeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCC------------
Q 016416 168 MKCEGM-NH-----PR-CLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR------------ 225 (390)
Q Consensus 168 ~~~~~~-~~-----~r-~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r------------ 225 (390)
+.+... +. .+ ..+.+++. .+.||+.. ..+ ..+++=+=.-.+|+.+..+|...
T Consensus 116 ~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~-~~g-----~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~ 189 (737)
T 2cn3_A 116 EKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT-RCG-----NGLWRSTDYGVTWSKVESFPNPGTYIYDPNFDYTK 189 (737)
T ss_dssp EEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC-STT-----CCEEEESSTTSSCEECTTCCCCCCCBSCTTSTTTC
T ss_pred ccCCCCcccCCCcCcccccceEEECCCCCCEEEEee-ccC-----CcEEEeCCCCcceecccCCCCCcccccCccccccc
Confidence 876431 10 11 11233321 25666642 111 12332222234799987655421
Q ss_pred --cCceEEEEC----------CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEE
Q 016416 226 --RLCSGFFMD----------GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYA 292 (390)
Q Consensus 226 --~~~~~~~~~----------~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v 292 (390)
.....+.++ +.||+...... ..+++=.-.-.+|+.+..+|... ..+.++.. ++.+|+
T Consensus 190 ~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~-----~~v~~S~DgG~tW~~~~~~p~~~-----~~~~~~~~~~~~l~~ 259 (737)
T 2cn3_A 190 DIIGVVWVVFDKSSSTPGNPTKTIYVGVADKN-----ESIYRSTDGGVTWKAVPGQPKGL-----LPHHGVLASNGMLYI 259 (737)
T ss_dssp SBCCEEEEEECGGGSCTTSCCSCEEEEESCSS-----CCEEEESSTTSCCEECTTCCCSS-----EEEEEEECTTSEEEE
T ss_pred CCCCEEEEEcCCCCcccCCCCCEEEEEecCCC-----ccEEEEcCCCCceEECCCCCCcc-----cceEEEECCCCeEEE
Confidence 011223332 26776532111 12333222345799988655421 11112222 678888
Q ss_pred Eec---------CCCeEEEEeCCCCceEEccCCCccc-cCCCcceeEEEEe---CCEEEEEcCCCCCCCCeEEEeeecCC
Q 016416 293 VEY---------LTNMVKKYDKLKNTWDVLGRLPVRA-DLSNGWGLAFKAC---GNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 293 ~gg---------~~~~v~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
..+ ....+++++-...+|+.+...|... ..+.++ ..+++. .+.||+.+...- ..+..+|-..
T Consensus 260 ~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~-~~i~v~p~~~~~ly~~~~~~~----~~~~~l~~S~ 334 (737)
T 2cn3_A 260 TYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCF-AGLAVDRQNPDIIMVTSMNAW----WPDEYIFRST 334 (737)
T ss_dssp EEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEE-EEEEECTTCTTCEEEEEECCC----SSCCCEEEES
T ss_pred EecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCccccccc-ccEEEcCCCCCEEEEEecccC----CCCccEEEeC
Confidence 742 3357899999999999998765430 111112 123222 367888875411 0112234333
Q ss_pred CCCCCCCCceEEe
Q 016416 360 SGVNNGTLDWKVL 372 (390)
Q Consensus 360 ~~~~~~~~~W~~~ 372 (390)
+ +..+|+.+
T Consensus 335 D----gG~tW~~~ 343 (737)
T 2cn3_A 335 D----GGATWKNI 343 (737)
T ss_dssp S----TTSSCEES
T ss_pred C----CCccccch
Confidence 3 34689988
No 278
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=74.02 E-value=35 Score=27.86 Aligned_cols=140 Identities=13% Similarity=0.012 Sum_probs=73.9
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE--Ec----CCCCCCCcCceEEEE--CCEEEEEecccCCCccCce
Q 016416 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE--ML----PSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 252 (390)
+++...+++|+|=| ..+|.++.....+. .+ +.+|.. .. ++... ++++|++-|. .
T Consensus 28 Ai~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~iyfFkG~--------~ 89 (207)
T 1pex_A 28 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRGR--------K 89 (207)
T ss_dssp EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEETT--------E
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCcEEEEccC--------E
Confidence 44557899999955 23666665433321 11 234422 11 22223 6899999553 3
Q ss_pred EEEEeCCCCc---eEEccC--CCCCCCCcCCCCCEEEEE---CCEEEEEecCCCeEEEEeCCCCceEE-----c----cC
Q 016416 253 GEEFDLETRK---WRKIEG--MYPNVNRAAQAPPLVAVV---DNQLYAVEYLTNMVKKYDKLKNTWDV-----L----GR 315 (390)
Q Consensus 253 v~~yd~~~~~---W~~~~~--~~~~~~~~~~~~~~~~~~---~g~l~v~gg~~~~v~~yd~~~~~W~~-----v----~~ 315 (390)
+++|+-.+-. =..+.. +|.. . ...-+++. +|++|++-| +..++||..+++=.. | ..
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~GlP~~----~-~~IDAA~~~~~~gk~yfFkG--~~ywr~d~~~~~~d~gyPr~i~~~~~G 162 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELGLPKE----V-KKISAAVHFEDTGKTLLFSG--NQVWRYDDTNHIMDKDYPRLIEEDFPG 162 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTT----C-CCCCEEEECTTTSEEEEEET--TEEEEEETTTTEECSSCCCBHHHHSTT
T ss_pred EEEEeCCeeccCCceeccccCCCCC----C-ccccEEEEeCCCCEEEEEeC--CEEEEEeCcCccccCCCCccHHHcCCC
Confidence 5666532211 112222 1110 0 11223332 489999966 688999987653110 1 11
Q ss_pred CCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 316 LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+|.. . -++...++++|.+-|.. .+.||..+
T Consensus 163 ip~~------i-DaAf~~~g~~YfFkg~~--------y~rf~~~~ 192 (207)
T 1pex_A 163 IGDK------V-DAVYEKNGYIYFFNGPI--------QFEYSIWS 192 (207)
T ss_dssp SCSC------C-SEEEEETTEEEEEETTE--------EEEEETTT
T ss_pred CCCC------c-cEEEEcCCcEEEEECCE--------EEEEeCCc
Confidence 2211 1 23445699999998843 77888866
No 279
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=72.91 E-value=57 Score=31.82 Aligned_cols=57 Identities=2% Similarity=-0.253 Sum_probs=31.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCC--cceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPR--CLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
..++++|..+++-+.+....... .......-+++.++++.. ..++++|..++.-+.+
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------~~i~~~~~~~g~~~~~ 149 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------NNIYYCAHVGKQAIRV 149 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-------TEEEEESSSSSCCEEE
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-------CeEEEEECCCCceEEE
Confidence 68899999988765554432211 111111224444444331 3588888887766554
No 280
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=71.58 E-value=79 Score=30.92 Aligned_cols=107 Identities=8% Similarity=-0.065 Sum_probs=53.1
Q ss_pred ceEEEEECCC-CcEEEcCCCCCC-Cc-CceEEEECCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCC
Q 016416 203 KSAELYDSTT-GRWEMLPSMHSP-RR-LCSGFFMDGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQ 278 (390)
Q Consensus 203 ~~~~~yd~~t-~~W~~~~~~~~~-r~-~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 278 (390)
..++++|..+ ++-+.+...... .. ..... -+|+ |++....... ....++.+|+.+.+...+......... ..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~-~~ 338 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ--KKLDLVEVTLASNQQRVLAHETSPTWV-PL 338 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS--SEEEEEEEETTTCCEEEEEEEECSSCC-CC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC--CeEEEEEEECCCCceEEEEEcCCCCcC-Cc
Confidence 3788889888 765554322111 11 11122 4444 4444332221 245788999999887665322111000 00
Q ss_pred CCCEEEEECCEEEEEecCC--CeEEEEeCCCCceEEcc
Q 016416 279 APPLVAVVDNQLYAVEYLT--NMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 279 ~~~~~~~~~g~l~v~gg~~--~~v~~yd~~~~~W~~v~ 314 (390)
.......-+|++++.+... ..++.+|.... ...+.
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence 0111333467766665433 47888887666 55554
No 281
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=71.49 E-value=49 Score=28.53 Aligned_cols=139 Identities=16% Similarity=0.014 Sum_probs=71.5
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeee-eCC-EEEEEeccC-C--------------CC-----CccceEEEEECCC
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGS-IAIIAGGSD-K--------------NG-----HVLKSAELYDSTT 212 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~-~lyv~GG~~-~--------------~~-----~~~~~~~~yd~~t 212 (390)
..++++|..+++...+...+. ...... -++ .|++..... . ++ .....++++|+.+
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp EEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred ceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 468899998887766544332 112222 144 444443210 0 00 0136789999999
Q ss_pred CcE-EEcCCCCCCCcCceEEEE-CCEEEEEecccCCCc--c-CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC
Q 016416 213 GRW-EMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTV--S-LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD 287 (390)
Q Consensus 213 ~~W-~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~--~-~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
++. +.+.. + .....+.. +| +++.+..+.... . ...++.+| ++++..+... . . .... .-+
T Consensus 162 ~~~~~~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~-----~--~~~~-spd 225 (347)
T 2gop_A 162 EEVIEEFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-V-----S--FYAV-DSD 225 (347)
T ss_dssp TEEEEEEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-E-----S--EEEE-EEC
T ss_pred CeEEeeecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-c-----c--eeeE-CCC
Confidence 887 66544 2 22233333 55 555554332111 1 34678888 6677665432 1 1 0012 446
Q ss_pred CE-EEEEec-------CCCeEEEEeCCCCceEEcc
Q 016416 288 NQ-LYAVEY-------LTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 288 g~-l~v~gg-------~~~~v~~yd~~~~~W~~v~ 314 (390)
|+ |++.+. ....++.+| ++++..+.
T Consensus 226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred CCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 65 444432 135799999 66776654
No 282
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=71.43 E-value=52 Score=28.77 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=65.2
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC----CCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCC
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH----SPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLE 259 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~ 259 (390)
++++|+.......+. ..++.++ +++-...+... ........+.+ +|+||++..... ......+.+||+.
T Consensus 27 ~g~~~v~~~~~~~~~--~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~-~~~~~~i~~~d~~ 101 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPE--MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ-SKSVPKLVAWDTL 101 (343)
T ss_dssp TSCEEEEECGGGCCS--CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH-HTSCCEEEEEETT
T ss_pred CCCEEEEeCCCCCCc--eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC-cCCCCeEEEEECC
Confidence 678888753211111 4567777 45544333211 11122333444 589999842110 0013568899999
Q ss_pred CCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEec---CCCeEEEEeCCCCc-eEEc
Q 016416 260 TRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEY---LTNMVKKYDKLKNT-WDVL 313 (390)
Q Consensus 260 ~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg---~~~~v~~yd~~~~~-W~~v 313 (390)
+++-...-.++............+++- ++.+|+.+. ....+.+||+.+++ |..+
T Consensus 102 tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 102 NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 887433222221110111122345554 578999976 66899999998664 6655
No 283
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=71.39 E-value=39 Score=27.27 Aligned_cols=147 Identities=11% Similarity=-0.001 Sum_probs=71.2
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCC---CcEEEc----CCCCCCCcCceEEEECCEEEEEecccCCCccCceE
Q 016416 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT---GRWEML----PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v 253 (390)
+++..++++|+|-|. .+|+++... +.=+.+ +.+|.. ..++....+|++|++-| +.+
T Consensus 10 A~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~~-iDAa~~~~~g~~yfFkg--------~~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPAS-INTAYERKDGKFVFFKG--------DKH 72 (196)
T ss_dssp EEEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCSS-CCEEEECTTSCEEEEET--------TEE
T ss_pred EEEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCCC-ccEEEEeCCCcEEEecC--------CEE
Confidence 344668999999652 366665321 100111 233432 22211124788999854 246
Q ss_pred EEEeCCCCce---EEccCCCCCCCCcCCCCCEEEE-E--CCEEEEEecCCCeEEEEeCCCCceE-----EccCCCccccC
Q 016416 254 EEFDLETRKW---RKIEGMYPNVNRAAQAPPLVAV-V--DNQLYAVEYLTNMVKKYDKLKNTWD-----VLGRLPVRADL 322 (390)
Q Consensus 254 ~~yd~~~~~W---~~~~~~~~~~~~~~~~~~~~~~-~--~g~l~v~gg~~~~v~~yd~~~~~W~-----~v~~~~~~~~~ 322 (390)
++||..+... ..+..+-+.. +....-+|. . ++++|++-| +..++||..+++-. .|...+..+.
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~gl---P~~~IDAA~~~~~~g~~yfFkG--~~yw~yd~~~~~v~~gyPk~i~~~~gip~- 146 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGL---PTDKIDAALFWMPNGKTYFFRG--NKYYRFNEELRAVDSEYPKNIKVWEGIPE- 146 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSC---CSSCCSEEEEETTTTEEEEEET--TEEEEEETTTTEECTTCSEEGGGSBTCCS-
T ss_pred EEEeCCcccCCCCeEhhhcCCCC---CCCcccEEEEEccCCEEEEEEC--CEEEEEeCCcccccCCCCccHHHCCCcCC-
Confidence 7777542110 1222211000 101122333 2 589999965 57899998775321 1211111111
Q ss_pred CCcceeEEEEeCC-EEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 323 SNGWGLAFKACGN-ELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 323 ~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..-+++...++ ++|.+-|.. .+.||..+
T Consensus 147 --~idaAf~~~~~~~~YfFkg~~--------y~r~d~~~ 175 (196)
T 3c7x_A 147 --SPRGSFMGSDEVFTYFYKGNK--------YWKFNNQK 175 (196)
T ss_dssp --SCSEEEECTTSSEEEEEETTE--------EEEEETTT
T ss_pred --CcceeEEecCCCEEEEEECCE--------EEEEECCc
Confidence 11133322244 999998843 67888765
No 284
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=70.62 E-value=78 Score=30.46 Aligned_cols=110 Identities=6% Similarity=-0.075 Sum_probs=58.8
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC-CCCCC-CcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP-SMHSP-RRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
+++..+.++.++ .+.++|..+ .+..+. .++.+ +..++.+. -+|++.+.||.++ .+..||+.++.
T Consensus 96 dG~~LAs~s~dg------~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DG------tVkIWd~~~~~ 162 (588)
T 2j04_A 96 IDDWMAVLSNNG------NVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDG------ELQFFSIRKNS 162 (588)
T ss_dssp SSSCEEEEETTS------CEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTS------EEEEEECCCCT
T ss_pred CCCEEEEEeCCC------cEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCC------EEEEEECCCCc
Confidence 566666666543 367777443 444433 22212 22333333 3788888887653 47789988864
Q ss_pred e-----EEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016416 263 W-----RKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 263 W-----~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
- -.+..+......+......++...+. ++.++.-+.+..||..++.
T Consensus 163 l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 163 ENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp TTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSS
T ss_pred cccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCc
Confidence 1 11111111000011122234555555 6677778899999988766
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=69.45 E-value=47 Score=30.53 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=75.3
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016416 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
+.||+.-.. ..+.++|+.++..+.+.. .......+.+ +|.||+.-.... .....++.++... .|.
T Consensus 153 g~Lyv~D~~-------~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~~--~~~~gv~~~~~~~-~~~ 219 (433)
T 4hw6_A 153 DDLYWVGQR-------DAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQSS--DTNTGIYLFTRAS-GFT 219 (433)
T ss_dssp CEEEEECBT-------SCEEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCSC--TTSEEEEEECGGG-TTC
T ss_pred CEEEEEeCC-------CCEEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCCC--cccceEEEEECCC-Cee
Confidence 889998321 569999999888776643 1112233333 567888753221 1123355555432 222
Q ss_pred ---EccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCce-EEccCCCccccCCCcceeEEEEeCCEEE
Q 016416 265 ---KIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTW-DVLGRLPVRADLSNGWGLAFKACGNELL 338 (390)
Q Consensus 265 ---~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W-~~v~~~~~~~~~~~~~~~~~~~~~~~ly 338 (390)
.++.+.. + ..+++. +|.||+.....+.|++||+.+..- ..+........ ..+.++...++.||
T Consensus 220 ~~~~~~~~~~-----P---~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~---~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 220 ERLSLCNARG-----A---KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGS---NFHIVWHPTGDWAY 288 (433)
T ss_dssp CEEEEEECSS-----B---CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSS---CEEEEECTTSSEEE
T ss_pred ccccccccCC-----C---CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCC---cccEEEeCCCCEEE
Confidence 2221111 1 123332 689999987778999999987665 33322111111 11222222244699
Q ss_pred EEcCCCCCCCCeEEEeeecCC
Q 016416 339 VVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 339 v~GG~~~~~~~~~~i~~y~~~ 359 (390)
+.--.. +.|++++++
T Consensus 289 vad~~~------~~I~~~~~d 303 (433)
T 4hw6_A 289 IIYNGK------HCIYRVDYN 303 (433)
T ss_dssp EEETTT------TEEEEEEBC
T ss_pred EEeCCC------CEEEEEeCC
Confidence 886432 247775554
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=69.36 E-value=53 Score=30.16 Aligned_cols=142 Identities=11% Similarity=0.010 Sum_probs=75.4
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEE---Ec
Q 016416 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE---ML 218 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~---~~ 218 (390)
+.||+.-.. ..+.++|+.+++...+... .. ...+++. -++.||+....... ....+..++... .+. .+
T Consensus 153 g~Lyv~D~~---~~I~~id~~~g~v~~~~~~-~~-~P~giavd~dG~lyVad~~~~~--~~~gv~~~~~~~-~~~~~~~~ 224 (433)
T 4hw6_A 153 DDLYWVGQR---DAFRHVDFVNQYVDIKTTN-IG-QCADVNFTLNGDMVVVDDQSSD--TNTGIYLFTRAS-GFTERLSL 224 (433)
T ss_dssp CEEEEECBT---SCEEEEETTTTEEEEECCC-CS-CEEEEEECTTCCEEEEECCSCT--TSEEEEEECGGG-TTCCEEEE
T ss_pred CEEEEEeCC---CCEEEEECCCCEEEEeecC-CC-CccEEEECCCCCEEEEcCCCCc--ccceEEEEECCC-Ceeccccc
Confidence 788887543 6899999988887766431 11 1122222 24559988532211 123355555432 221 22
Q ss_pred CCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCce-EEccCCCCCCCCcCCCCCEEEE-ECC-EEEEE
Q 016416 219 PSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKW-RKIEGMYPNVNRAAQAPPLVAV-VDN-QLYAV 293 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~-~~g-~l~v~ 293 (390)
+.+..| ...++. +|.||+.-. ....+++||+.+.+- ..+...... . ....+++ -+| .||+.
T Consensus 225 ~~~~~P---~giavd~~~G~lyv~d~------~~~~V~~~d~~~g~~~~~~~~~~~~----~-~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 225 CNARGA---KTCAVHPQNGKIYYTRY------HHAMISSYDPATGTLTEEEVMMDTK----G-SNFHIVWHPTGDWAYII 290 (433)
T ss_dssp EECSSB---CCCEECTTTCCEEECBT------TCSEEEEECTTTCCEEEEEEECSCC----S-SCEEEEECTTSSEEEEE
T ss_pred cccCCC---CEEEEeCCCCeEEEEEC------CCCEEEEEECCCCeEEEEEeccCCC----C-CcccEEEeCCCCEEEEE
Confidence 221111 223332 688998622 234689999987765 333221111 0 1112333 234 59999
Q ss_pred ecCCCeEEEEeCC
Q 016416 294 EYLTNMVKKYDKL 306 (390)
Q Consensus 294 gg~~~~v~~yd~~ 306 (390)
....+.|+++|..
T Consensus 291 d~~~~~I~~~~~d 303 (433)
T 4hw6_A 291 YNGKHCIYRVDYN 303 (433)
T ss_dssp ETTTTEEEEEEBC
T ss_pred eCCCCEEEEEeCC
Confidence 9888899997754
No 287
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=69.08 E-value=22 Score=34.34 Aligned_cols=258 Identities=9% Similarity=-0.013 Sum_probs=128.5
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEE---EeCCEEEEEcccc---------------cCCeE
Q 016416 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESL---AVGSELLVFGREL---------------FDFAI 157 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~---~~~~~iy~~Gg~~---------------~~~~~ 157 (390)
..++|+... ...+...|+.+.+-..+-.+|.....+. ..+ .-++++|+.+.+. ..+.+
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg---~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHG---LRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEE---EEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcc---eeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 366777542 5568889999877544334443222211 111 2367888875321 23467
Q ss_pred EEEECCCCc--EeecCCCCCCCcceeeee-eCCEEEEEeccC-------------------------------CCCCccc
Q 016416 158 WKYSLVFRS--WMKCEGMNHPRCLFGSGS-LGSIAIIAGGSD-------------------------------KNGHVLK 203 (390)
Q Consensus 158 ~~yd~~t~~--W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~-------------------------------~~~~~~~ 203 (390)
.+.|..+.+ |+..-. ..+ ....+. -+..+|+.--.. +.....+
T Consensus 178 tvID~~t~~v~~qI~Vg-g~p--d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVS-GNL--DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEEEEEEEES-SCC--CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeEEEEEEeC-CCc--cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 888988865 432211 111 111111 133444443111 1111235
Q ss_pred eEEEEECCCCcEEE-cCCCCCCCcCceEEEE-CCE-EEEEecccCCCccCceEEEEeCCCCc-e---------EEccCCC
Q 016416 204 SAELYDSTTGRWEM-LPSMHSPRRLCSGFFM-DGK-FYVIGGMSSPTVSLTCGEEFDLETRK-W---------RKIEGMY 270 (390)
Q Consensus 204 ~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~-W---------~~~~~~~ 270 (390)
.+-+.|..+.+.+. +.-+|.+...|++... +|+ +|+.+. ..+.+.+||..+.+ + ..+...+
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~------~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK------LSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECT------TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCC------CCCeEEEEECcccccccccccCcccceEEEcC
Confidence 68888988733222 2223444444555554 565 555433 24567889988642 1 0111222
Q ss_pred CCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCC--------CceEEccCCCccccC---CCcceeEEEEeCCEEEE
Q 016416 271 PNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLK--------NTWDVLGRLPVRADL---SNGWGLAFKACGNELLV 339 (390)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~--------~~W~~v~~~~~~~~~---~~~~~~~~~~~~~~lyv 339 (390)
.... ++ +.+..-+|.+|+.-...+.|.+||.++ +.+..+..++..-.. ....|.....-+..||+
T Consensus 329 vG~g--P~--h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 329 LGLG--PL--HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp CCSC--EE--EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred CCCC--cc--eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 2110 11 123334578888887788999999876 336666655543210 00001111133667888
Q ss_pred EcCCCCCCC------CeEEEeeecCCCCCCCCCCceEEecccC
Q 016416 340 VGGQRGPEG------ENVVLNSWCPKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 340 ~GG~~~~~~------~~~~i~~y~~~~~~~~~~~~W~~~~~~p 376 (390)
..+...+.- ...+-.+||++. .+=+.+...|
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~ql~dis~------~~m~lv~d~p 441 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPENDQLIDISG------DKMVLVHDGP 441 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEEEEEECSS------SSCEEEEEEE
T ss_pred cCCCCccccccCCCCCCCcceEEEcCC------CcEEEEEEEc
Confidence 888764331 112335788865 4556665554
No 288
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=68.45 E-value=49 Score=27.33 Aligned_cols=145 Identities=11% Similarity=0.112 Sum_probs=73.9
Q ss_pred eCCEEEEEcccccCCeEEEEEC---------------CCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccc
Q 016416 141 VGSELLVFGRELFDFAIWKYSL---------------VFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLK 203 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~---------------~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~ 203 (390)
.++.+|+|-|. .+|+++. .+..|..+|..+.......++. .++++|+|-| +
T Consensus 12 ~~ge~~fFk~~----~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg--------~ 79 (225)
T 3oyo_A 12 SEYEVYFFAKN----KYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG--------N 79 (225)
T ss_dssp STTEEEEEETT----EEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET--------T
T ss_pred CCCEEEEEECC----EEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC--------C
Confidence 36888888762 4566661 1223444432111112333333 4799999965 3
Q ss_pred eEEEEECCCC----cEEE--------cCCCCCC--CcCceEEE---ECCEEEEEecccCCCccCceEEEEeCCCCceEE-
Q 016416 204 SAELYDSTTG----RWEM--------LPSMHSP--RRLCSGFF---MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK- 265 (390)
Q Consensus 204 ~~~~yd~~t~----~W~~--------~~~~~~~--r~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~- 265 (390)
.+|+||..++ .... .+.+|.. ....-+|. .++++|++-|. ..++||..+++-..
T Consensus 80 ~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~--------~yw~~d~~~~~~~~g 151 (225)
T 3oyo_A 80 HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN--------KYVRIAYDSKQLVGN 151 (225)
T ss_dssp EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT--------EEEEEETTTTEEEEE
T ss_pred EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC--------eEEEEECCCCeecCC
Confidence 4788876332 1111 1223321 00222333 27899999653 47889877665443
Q ss_pred ---cc-CCCCCCC-CcCCCCCEEEE--ECCEEEEEecCCCeEEEEeCCC
Q 016416 266 ---IE-GMYPNVN-RAAQAPPLVAV--VDNQLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 266 ---~~-~~~~~~~-~~~~~~~~~~~--~~g~l~v~gg~~~~v~~yd~~~ 307 (390)
+. ..|.... ......-++.. .++++|++-| +..++||..+
T Consensus 152 Pk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG--~~ywr~d~~~ 198 (225)
T 3oyo_A 152 IRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG--QNYVRIDFTP 198 (225)
T ss_dssp EEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET--TEEEEEECCT
T ss_pred CcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC--CEEEEEeCCc
Confidence 11 1111000 00111112333 3789999966 5899999873
No 289
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=68.35 E-value=67 Score=28.80 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=18.1
Q ss_pred EEEEEecCCCeEEEEeCCCCce
Q 016416 289 QLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 289 ~l~v~gg~~~~v~~yd~~~~~W 310 (390)
.+++.|+..+.|.+||..+.+-
T Consensus 240 ~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 240 NTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp TEEEEEETTSCEEEEETTTCSS
T ss_pred cEEEEEeCCCeEEEEECcCCcc
Confidence 6788888888999999988763
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=67.89 E-value=92 Score=30.24 Aligned_cols=173 Identities=10% Similarity=-0.066 Sum_probs=96.4
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 232 (390)
.++...|..+..-..+.+++......+++.. ++.||+.-.. ...+.++++.....+.+...... ...+.++
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~------~~~I~r~~~~g~~~~~v~~~g~~-~P~GlAv 87 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS------LKTISRAFMNGSALEHVVEFGLD-YPEGMAV 87 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSSCS-CCCEEEE
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC------CCeEEEEECCCCCcEEEEeCCCC-CcceEEE
Confidence 4566777765543332232222233333332 6899998542 35688888876655544221111 1123333
Q ss_pred --ECCEEEEEecccCCCccCceEEEEeCCCCceEEcc--CCCCCCCCcCCCCCEEEEE--CCEEEEEe-cCCCeEEEEeC
Q 016416 233 --MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIE--GMYPNVNRAAQAPPLVAVV--DNQLYAVE-YLTNMVKKYDK 305 (390)
Q Consensus 233 --~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~--~g~l~v~g-g~~~~v~~yd~ 305 (390)
.+++||+.-. ....|+++|+....=+.+. .+.. + ..+++- +|.||... |....|++.++
T Consensus 88 D~~~~~LY~tD~------~~~~I~v~~~dG~~~~~l~~~~l~~-----P---~~iavdp~~G~lY~tD~g~~~~I~r~~~ 153 (628)
T 4a0p_A 88 DWLGKNLYWADT------GTNRIEVSKLDGQHRQVLVWKDLDS-----P---RALALDPAEGFMYWTEWGGKPKIDRAAM 153 (628)
T ss_dssp ETTTTEEEEEET------TTTEEEEEETTSTTCEEEECSSCCC-----E---EEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EeCCCEEEEEEC------CCCEEEEEecCCCcEEEEEeCCCCC-----c---ccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence 3689999732 2357888988654433332 1111 1 135554 68999998 55689999999
Q ss_pred CCCceEEcc-CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 306 LKNTWDVLG-RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 306 ~~~~W~~v~-~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+...-..+. .+..+ .|.++-..+++||+.-... ..|+++|++.
T Consensus 154 dG~~~~~l~~~~~~P------~GlalD~~~~~LY~aD~~~------~~I~~~d~dG 197 (628)
T 4a0p_A 154 DGSERTTLVPNVGRA------NGLTIDYAKRRLYWTDLDT------NLIESSNMLG 197 (628)
T ss_dssp TSCSCEEEECSCSSE------EEEEEETTTTEEEEEETTT------TEEEEEETTS
T ss_pred CCCceEEEECCCCCc------ceEEEccccCEEEEEECCC------CEEEEEcCCC
Confidence 877655543 22221 1233222368999987533 2577777754
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=63.72 E-value=74 Score=27.67 Aligned_cols=144 Identities=12% Similarity=0.039 Sum_probs=82.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeec--CCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKC--EGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
++.||+.-. ....+.++++....-+.+ ..+..|+ +.++ .++.||+.--. ....++++++....-+.
T Consensus 90 ~g~ly~~d~--~~~~I~~~~~dG~~~~~l~~~~~~~P~---giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 90 GEKLYWTDS--ETNRIEVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWG-----EVPKIERAGMDGSSRFI 159 (318)
T ss_dssp TTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSEE---EEEEEGGGTEEEEEECS-----SSCEEEEEETTSCSCEE
T ss_pred CCeEEEEEC--CCCEEEEEECCCCcEEEEEeCCCCCcc---EEEEeCCCCEEEEEecC-----CCCEEEEEEcCCCCeEE
Confidence 678887643 235788888875433333 2222222 3333 36899997421 13568899886433222
Q ss_pred cCCCCCCCcC-ceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEe
Q 016416 218 LPSMHSPRRL-CSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE 294 (390)
Q Consensus 218 ~~~~~~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~g 294 (390)
+.. ..... .+.+.- +++||+.=. ....|+++|+....-+.+..... ....++++.++.+|+..
T Consensus 160 ~~~--~~l~~Pnglavd~~~~~lY~aD~------~~~~I~~~d~dG~~~~~~~~~~~------~~P~glav~~~~lywtd 225 (318)
T 3sov_A 160 IIN--SEIYWPNGLTLDYEEQKLYWADA------KLNFIHKSNLDGTNRQAVVKGSL------PHPFALTLFEDILYWTD 225 (318)
T ss_dssp EEC--SSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEECSCC------SCEEEEEEETTEEEEEE
T ss_pred EEE--CCCCCccEEEEeccCCEEEEEEC------CCCEEEEEcCCCCceEEEecCCC------CCceEEEEeCCEEEEEe
Confidence 211 11112 233332 689999832 24678899987543333322111 11235777899999998
Q ss_pred cCCCeEEEEeCCCCc
Q 016416 295 YLTNMVKKYDKLKNT 309 (390)
Q Consensus 295 g~~~~v~~yd~~~~~ 309 (390)
-..+.|.++|+.+++
T Consensus 226 ~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 226 WSTHSILACNKYTGE 240 (318)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred cCCCeEEEEECCCCC
Confidence 888899999997654
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=63.18 E-value=81 Score=27.89 Aligned_cols=229 Identities=11% Similarity=0.050 Sum_probs=107.6
Q ss_pred cEEEEEe-CCCeeEEEecCCCceeeCCCCCCCc---ccCCCCeeEEE----eCCEEEEEccc-----------ccCCeEE
Q 016416 98 HWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDE---CFNHADKESLA----VGSELLVFGRE-----------LFDFAIW 158 (390)
Q Consensus 98 ~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~---~~~~~~~~~~~----~~~~iy~~Gg~-----------~~~~~~~ 158 (390)
..+|+.. -...+..+||..+.-..+ .++... ........+.. ..+.|+++... .....+.
T Consensus 25 g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~ 103 (334)
T 2p9w_A 25 QVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFH 103 (334)
T ss_dssp TEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEE
T ss_pred CEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEE
Confidence 4455543 256788899986554444 233210 00001112223 24677775210 0135789
Q ss_pred EEECC---CC--cEee-cCCCCC--------CCcce-eeee-eCCEEEEEeccCCCCCccceEEEEECCCCc---EEEcC
Q 016416 159 KYSLV---FR--SWMK-CEGMNH--------PRCLF-GSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGR---WEMLP 219 (390)
Q Consensus 159 ~yd~~---t~--~W~~-~~~~~~--------~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~ 219 (390)
+||+. ++ .|.. ++.... ..... .+++ -++.+||.+... ...++++|+.... |-.-.
T Consensus 104 ~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~-----~~~I~rV~pdG~~~~~~~~~~ 178 (334)
T 2p9w_A 104 SFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG-----MPAIARVSADGKTVSTFAWES 178 (334)
T ss_dssp EEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES-----SCEEEEECTTSCCEEEEEECC
T ss_pred EEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC-----CCeEEEEeCCCCEEeeeeecC
Confidence 99987 44 3532 111110 11112 2222 268999986542 1458888887542 54333
Q ss_pred CCCCCCcCceEEE-E-CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCC--CCC-cCCCCCE--EEEECCEEE
Q 016416 220 SMHSPRRLCSGFF-M-DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPN--VNR-AAQAPPL--VAVVDNQLY 291 (390)
Q Consensus 220 ~~~~~r~~~~~~~-~-~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--~~~-~~~~~~~--~~~~~g~l~ 291 (390)
+....+.+..+++ . +| .|++..+ ...+++||+.+-...++ +.. ... .....-. ..-.+|++.
T Consensus 179 ~~~~~~~G~nGIv~~pdg~~Liv~~~-------~g~L~~fD~~~pv~~~v---~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 179 GNGGQRPGYSGITFDPHSNKLIAFGG-------PRALTAFDVSKPYAWPE---PVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CCSSSCCSCSEEEEETTTTEEEEESS-------SSSEEEEECSSSSCCCE---ECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred CCcccccCcceEEEeCCCCEEEEEcC-------CCeEEEEcCCCCcceee---cccccCCcccccCcccccccccCCEEE
Confidence 2233354555544 4 45 4555533 23478899874322011 110 000 0000112 223689986
Q ss_pred EEecCCCeEEEEeCCCCceEEcc---CCCccccCCCcceeEEEE---eCCEEEEEcCCC
Q 016416 292 AVEYLTNMVKKYDKLKNTWDVLG---RLPVRADLSNGWGLAFKA---CGNELLVVGGQR 344 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~~W~~v~---~~~~~~~~~~~~~~~~~~---~~~~lyv~GG~~ 344 (390)
++....+.+..+-...+ |.... ..|.... ..+...++++ .+++||++.+.-
T Consensus 249 lV~~~~~~~~~l~S~Dg-W~sa~~~g~~~~~~~-~~g~tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN-WKSANIKKTKRSELQ-NSGFTAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp EEEEETTEEEEEECSST-TSEEEEEEEECGGGG-SSCEEEEEEEEETTEEEEEEEECCG
T ss_pred EEEcCCCCEEEEECCCC-cceeEEeeeecCccc-cCceeEEEEeccccCCeEEEEeeec
Confidence 66543344444433334 98743 2222211 1233333332 689999999754
No 293
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=63.08 E-value=1.2e+02 Score=29.72 Aligned_cols=102 Identities=11% Similarity=-0.002 Sum_probs=60.9
Q ss_pred cceEEEEECCCC--cEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCC---ceEEccCCCCCCCCc
Q 016416 202 LKSAELYDSTTG--RWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR---KWRKIEGMYPNVNRA 276 (390)
Q Consensus 202 ~~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~~~~~ 276 (390)
.++++++|..+. .|+.+..-...... ....-++.||+....+. ....++..|+.+. .|+.+.+-...
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~---- 329 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPERQQ---- 329 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCCSS----
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecCCCC----
Confidence 368999998766 67776432222111 12345789999876543 2456888998763 48876443321
Q ss_pred CCCCCEEEEECCEEEEEec--CCCeEEEEeCCCCceEEcc
Q 016416 277 AQAPPLVAVVDNQLYAVEY--LTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 277 ~~~~~~~~~~~g~l~v~gg--~~~~v~~yd~~~~~W~~v~ 314 (390)
.. .....++.|++... ....++++|..++....+.
T Consensus 330 --~~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 330 --VL-TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVA 366 (693)
T ss_dssp --CE-EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEEC
T ss_pred --EE-EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEee
Confidence 11 35556677666542 3347899998866555553
No 294
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=61.54 E-value=91 Score=27.93 Aligned_cols=148 Identities=10% Similarity=0.018 Sum_probs=76.8
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCCcE--eec----CCCCCCCcceeee-e--eCCEEEEEeccCCCCCccceEEEE
Q 016416 138 SLAVGSELLVFGRELFDFAIWKYSLVFRSW--MKC----EGMNHPRCLFGSG-S--LGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W--~~~----~~~~~~r~~~~~~-~--~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
+...++.+|+|-|. .+|+++.....- ..+ +.+|. ...++ . .++++|+|-| +..|+|
T Consensus 186 v~~~~g~~~fFkg~----~~Wr~~~~~~~~~p~~I~~~wpgLP~---~iDAa~~~~~~g~~~fFkg--------~~yWr~ 250 (365)
T 3ba0_A 186 VTTVGNKIFFFKDR----FFWLKVSERPKTSVNLISSLWPTLPS---GIEAAYEIEARNQVFLFKD--------DKYWLI 250 (365)
T ss_dssp EEEETTEEEEEETT----EEEECCSSCCCCCEEEHHHHCSSCCS---SCCEEEEEGGGTEEEEEET--------TEEEEC
T ss_pred EEEcCCeEEEEeCC----EEEEEcCCCccCCccchhhhccCCCC---CccEEEEecCCCEEEEEeC--------CEEEEE
Confidence 45568899988763 566665443211 111 22332 22222 2 2789999965 346777
Q ss_pred ECCCCc--E-EEcCC--CCCCCcCceEE-EE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCC----CCc
Q 016416 209 DSTTGR--W-EMLPS--MHSPRRLCSGF-FM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNV----NRA 276 (390)
Q Consensus 209 d~~t~~--W-~~~~~--~~~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~----~~~ 276 (390)
+...-. + +.+.. +|..-...-+| .. ++++|++-| +..++||..+++-.. .-|... ...
T Consensus 251 ~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~--gyPk~I~~~f~g~ 320 (365)
T 3ba0_A 251 SNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDP--GYPKLITKNFQGI 320 (365)
T ss_dssp STTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECS--SCCCCHHHHSTTC
T ss_pred cCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCcceecC--CCCcchhhcCCCC
Confidence 643211 1 23333 23211122233 33 589999954 347889987654221 111100 000
Q ss_pred CCCCCEEEEE-CCEEEEEecCCCeEEEEeCCCCceEE
Q 016416 277 AQAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 277 ~~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~W~~ 312 (390)
+...-++... +|++|.+-| +..++||..+.+-..
T Consensus 321 p~~iDaA~~~~~g~~YfFkg--~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 321 GPKIDAVFYSKNKYYYFFQG--SNQFEYDFLLQRITK 355 (365)
T ss_dssp CSSCSEEEEETTTEEEEEET--TEEEEEETTTTEEEE
T ss_pred CCccceeeEecCCcEEEEeC--CEEEEEECCccEEec
Confidence 1112234445 789999966 589999998876554
No 295
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=61.18 E-value=27 Score=31.07 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=31.4
Q ss_pred eEEEEeCCCC--ceEEccC--CCCCCCCcCCCCCEEEEECCEEEEEe-cCCCeEEEEeCCCCceEE
Q 016416 252 CGEEFDLETR--KWRKIEG--MYPNVNRAAQAPPLVAVVDNQLYAVE-YLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 252 ~v~~yd~~~~--~W~~~~~--~~~~~~~~~~~~~~~~~~~g~l~v~g-g~~~~v~~yd~~~~~W~~ 312 (390)
.++.+|..++ .|+.-.. .|.-. .+... ...++.+|++. ...+.++.||.+++.|.-
T Consensus 21 ~l~Ald~~tG~~~W~~~~~~~~p~~~---~~~~~--~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 21 GLHAVDRRNGHIIWSIEPENFQPLIE---IQEPS--RLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp CEEEEETTTTEEEEEECGGGSCCSEE---CCCSC--TTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred eEEEEECCCCcEEEEecCCccCCcEE---ecCCc--cccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 4677887766 4875432 11100 00000 01356777776 356889999988876543
No 296
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=59.38 E-value=97 Score=27.60 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=38.7
Q ss_pred CCEEEEEecccCC---CccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE--EEEEecCCCeEEEEeCCCC
Q 016416 234 DGKFYVIGGMSSP---TVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ--LYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 234 ~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~--l~v~gg~~~~v~~yd~~~~ 308 (390)
++++|+....... ....+.+.++|+.+.+=. ..++.... .......-+|+ +|+.....+.|.+||..+.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv--~~i~~g~~----p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS--SQISLGHD----VDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEE--EEEECCCC----cCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 4688987542111 112467999999886542 22222110 11123334554 5555445789999998876
Q ss_pred c
Q 016416 309 T 309 (390)
Q Consensus 309 ~ 309 (390)
+
T Consensus 352 ~ 352 (373)
T 2mad_H 352 D 352 (373)
T ss_pred C
Confidence 5
No 297
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=59.04 E-value=69 Score=25.75 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=73.0
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCC--c-Eeec----CCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEE
Q 016416 138 SLAVGSELLVFGRELFDFAIWKYSLVFR--S-WMKC----EGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~--~-W~~~----~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
+...++.+|+|-|. .+|+++.... . =..+ +.+|. ...++. .++++|+|-| +..|+|
T Consensus 11 ~~~~~g~~~fFkg~----~~w~~~~~~~~~gyP~~I~~~w~glP~---~iDAa~~~~~g~~yfFkg--------~~yw~~ 75 (196)
T 3c7x_A 11 VAMLRGEMFVFKER----WFWRVRNNQVMDGYPMPIGQFWRGLPA---SINTAYERKDGKFVFFKG--------DKHWVF 75 (196)
T ss_dssp EEEETTEEEEEETT----EEEEEETTEECTTCSEEHHHHSTTCCS---SCCEEEECTTSCEEEEET--------TEEEEE
T ss_pred EEEcCCEEEEEECC----EEEEEECCccCCCCceEhhHhccCCCC---CccEEEEeCCCcEEEecC--------CEEEEE
Confidence 44668899998763 5677754310 0 0111 12333 222222 4688999965 346888
Q ss_pred ECCCCcE---EEcCC----CCCCCcCceEEE-E--CCEEEEEecccCCCccCceEEEEeCCCCceE-----EccCCCCCC
Q 016416 209 DSTTGRW---EMLPS----MHSPRRLCSGFF-M--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-----KIEGMYPNV 273 (390)
Q Consensus 209 d~~t~~W---~~~~~----~~~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~~~~~~~ 273 (390)
+..+... +.+.. +|... .-+|. . ++++|++-|. ..++||..+++-. .+...+. .
T Consensus 76 ~~~~~~~gyPk~I~~~~~glP~~~--IDAA~~~~~~g~~yfFkG~--------~yw~yd~~~~~v~~gyPk~i~~~~g-i 144 (196)
T 3c7x_A 76 DEASLEPGYPKHIKELGRGLPTDK--IDAALFWMPNGKTYFFRGN--------KYYRFNEELRAVDSEYPKNIKVWEG-I 144 (196)
T ss_dssp ETTEECTTCSEEGGGTCBSCCSSC--CSEEEEETTTTEEEEEETT--------EEEEEETTTTEECTTCSEEGGGSBT-C
T ss_pred eCCcccCCCCeEhhhcCCCCCCCc--ccEEEEEccCCEEEEEECC--------EEEEEeCCcccccCCCCccHHHCCC-c
Confidence 7542110 12222 33222 22333 2 6899999553 4688998775321 1111111 0
Q ss_pred CCcCCCCCEEEEE-CC-EEEEEecCCCeEEEEeCCCCc
Q 016416 274 NRAAQAPPLVAVV-DN-QLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 274 ~~~~~~~~~~~~~-~g-~l~v~gg~~~~v~~yd~~~~~ 309 (390)
+...-++... ++ ++|.+-| +..++||..+++
T Consensus 145 ---p~~idaAf~~~~~~~~YfFkg--~~y~r~d~~~~~ 177 (196)
T 3c7x_A 145 ---PESPRGSFMGSDEVFTYFYKG--NKYWKFNNQKLK 177 (196)
T ss_dssp ---CSSCSEEEECTTSSEEEEEET--TEEEEEETTTTE
T ss_pred ---CCCcceeEEecCCCEEEEEEC--CEEEEEECCcce
Confidence 1111223333 44 8999965 578999987764
No 298
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=58.14 E-value=1.2e+02 Score=28.13 Aligned_cols=147 Identities=10% Similarity=-0.007 Sum_probs=76.1
Q ss_pred eEEEeCCEEEEEcccccCCeEEEEECCCCcEe--ec----CCCCCCCcceeeee---eCCEEEEEeccCCCCCccceEEE
Q 016416 137 ESLAVGSELLVFGRELFDFAIWKYSLVFRSWM--KC----EGMNHPRCLFGSGS---LGSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 137 ~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~--~~----~~~~~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
++...++.+|+|-|. .+|+++.....+. .+ +.+|. ...++. .++++|+|-| +.+|+
T Consensus 267 Ai~~~~ge~y~Fkg~----~~wr~~~~~~~~~p~~I~~~Wp~LP~---~iDAa~~~~~~g~~~fFKg--------~~~W~ 331 (450)
T 1su3_A 267 AITTIRGEVMFFKDR----FYMRTNPFYPEVELNFISVFWPQLPN---GLEAAYEFADRDEVRFFKG--------NKYWA 331 (450)
T ss_dssp EEEEETTEEEEEETT----EEEECCTTSSSCEEEEGGGTCTTSCS---SCCEEEEEGGGTEEEEEET--------TEEEE
T ss_pred eEEecCCeEEEEeCC----EEEEEcCCCCcccceehhHhccCCCC---CeeEEEEEcCCCeEEEEeC--------CEEEE
Confidence 445678999998763 4566654432221 11 12232 222222 3689999965 34677
Q ss_pred EECCCC--cE-EEcC---CCCCCCcCceEE-EE--CCEEEEEecccCCCccCceEEEEeCCCCceE-----Ecc-CCCCC
Q 016416 208 YDSTTG--RW-EMLP---SMHSPRRLCSGF-FM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-----KIE-GMYPN 272 (390)
Q Consensus 208 yd~~t~--~W-~~~~---~~~~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~-~~~~~ 272 (390)
|+..+- .+ +.+. .+|......-+| .. ++++|+|-| +..++||..+++-. .+. ..+.-
T Consensus 332 ~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG--------~~yw~yd~~~~~~~~gYPk~I~~~fpgi 403 (450)
T 1su3_A 332 VQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA--------NKYWRYDEYKRSMDPGYPKMIAHDFPGI 403 (450)
T ss_dssp EETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred ecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC--------CEEEEEeCCCccccCCCCcchhhcCCCC
Confidence 764321 00 1111 122211112223 33 689999955 35788987654321 111 01110
Q ss_pred CCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE
Q 016416 273 VNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 273 ~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~ 312 (390)
+...-++...+|++|.+-| +..|+||..+.+=..
T Consensus 404 ----p~~iDAA~~~~g~~YFFkg--~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 404 ----GHKVDAVFMKDGFFYFFHG--TRQYKFDPKTKRILT 437 (450)
T ss_dssp ----CSCCSEEEEETTEEEEEET--TEEEEEETTTTEEEE
T ss_pred ----CCCccEEEEcCCeEEEEeC--CEEEEEECCcceEec
Confidence 1112245567899999965 578999988776443
No 299
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=57.59 E-value=1.4e+02 Score=28.91 Aligned_cols=66 Identities=8% Similarity=-0.191 Sum_probs=34.3
Q ss_pred CeEEEEECCCCcEeecCCCCCC---CcceeeeeeCCEEEEEeccCCCC---CccceEEEEECCCCcEEEcCC
Q 016416 155 FAIWKYSLVFRSWMKCEGMNHP---RCLFGSGSLGSIAIIAGGSDKNG---HVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~---r~~~~~~~~~~~lyv~GG~~~~~---~~~~~~~~yd~~t~~W~~~~~ 220 (390)
..++++|..+++-..+-..... ........-+++.++++...... .....++++|..+++-+.+..
T Consensus 37 g~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 108 (723)
T 1xfd_A 37 GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP 108 (723)
T ss_dssp SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC
T ss_pred CCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC
Confidence 4678888887765433221111 01111122255555554432211 124679999999887666643
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=57.03 E-value=1.4e+02 Score=28.80 Aligned_cols=170 Identities=12% Similarity=0.004 Sum_probs=95.5
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.||+.-- ....++++++.......+-..... ...++++ .++.||+.-. ....+++.++....-+.+.
T Consensus 360 ~~~ly~sD~--~~~~I~r~~~~g~~~~~v~~~~~~-~p~GlAvD~~~~~lY~tD~------~~~~I~v~~~~G~~~~~l~ 430 (619)
T 3s94_A 360 EGYIYWTDD--EVRAIRRSFIDGSGSQFVVTAQIA-HPDGIAVDWVARNLYWTDT------GTDRIEVTRLNGTMRKILI 430 (619)
T ss_dssp TTEEEEEET--TTTEEEEEETTSCSCEEEECSSCS-CCCEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEE
T ss_pred CCeEEEEeC--CCCeEEEEEcCCCccEEEEECCCC-CcCceEEecccCcEEEEeC------CCCcEEEEeCCCCeEEEEE
Confidence 578888642 345788888877655544321111 1123444 4789999842 1356888988765433332
Q ss_pred --CCCCCCcCceEEEE--CCEEEEEe-cccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE--CCEEEE
Q 016416 220 --SMHSPRRLCSGFFM--DGKFYVIG-GMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYA 292 (390)
Q Consensus 220 --~~~~~r~~~~~~~~--~~~iyv~G-G~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v 292 (390)
.+..| .+.++. +|.||+.- |. ...|++.++....=..+..-.. ....++++- +++||+
T Consensus 431 ~~~l~~P---~~iavdp~~G~ly~tD~g~------~~~I~r~~~dG~~~~~l~~~~l------~~P~GlalD~~~~~LY~ 495 (619)
T 3s94_A 431 SEDLEEP---RAIVLDPMVGYMYWTDWGE------IPKIERAALDGSDRVVLVNTSL------GWPNGLALDYDEGKIYW 495 (619)
T ss_dssp CTTCCSE---EEEEEETTTTEEEEEECSS------SCEEEEEETTSCSCEEEECSSC------SCEEEEEEETTTTEEEE
T ss_pred ECCCCCe---eeEEEEcCCCcEEEecCCC------CCEEEEEccCCCccEEEEeCCC------CCCeeeEEcccCCEEEE
Confidence 22222 223333 58999973 21 2457777765433222221100 011134443 689999
Q ss_pred EecCCCeEEEEeCCCCceEEcc--CCCccccCCCcceeEEEEeCCEEEEEcCC
Q 016416 293 VEYLTNMVKKYDKLKNTWDVLG--RLPVRADLSNGWGLAFKACGNELLVVGGQ 343 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~~W~~v~--~~~~~~~~~~~~~~~~~~~~~~lyv~GG~ 343 (390)
.....+.|+.+|++...=+.+. .++.+ .++++.+++||+.--.
T Consensus 496 aD~~~~~I~~~~~dG~~~~~~~~~~l~~P--------~glav~~~~ly~tD~~ 540 (619)
T 3s94_A 496 GDAKTDKIEVMNTDGTGRRVLVEDKIPHI--------FGFTLLGDYVYWTDWQ 540 (619)
T ss_dssp EETTTTEEEEEESSSCCCEEEEECCCCSS--------CCEEEETTEEEEECTT
T ss_pred EECCCCEEEEEecCCCceEEEeccCCCCc--------EEEEEECCEEEEeecC
Confidence 9988899999998765433332 22221 2355678999998753
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=56.85 E-value=98 Score=26.85 Aligned_cols=222 Identities=13% Similarity=0.101 Sum_probs=105.7
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEE-EeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESL-AVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP 176 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~-~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~ 176 (390)
..+|+.+....++.-+-.-.+|..+......+.. . ..+. ..++.+|+.+. ...+++-.-.-.+|+.+.... +
T Consensus 90 ~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~--~-~~i~~~~~~~~~~~~~---~g~v~~S~DgG~tW~~~~~~~-~ 162 (327)
T 2xbg_A 90 NEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGS--P-RLIKALGNGSAEMITN---VGAIYRTKDSGKNWQALVQEA-I 162 (327)
T ss_dssp TEEEEEEETTEEEEESSTTSSCEECCCCTTCSSC--E-EEEEEEETTEEEEEET---TCCEEEESSTTSSEEEEECSC-C
T ss_pred CeEEEEECCCeEEEECCCCCCceECccccCCCCC--e-EEEEEECCCCEEEEeC---CccEEEEcCCCCCCEEeecCC-C
Confidence 4466655444444433335689987643211110 0 1222 34677887764 224554444456798875432 2
Q ss_pred Ccceeeeee-CCEEEEEeccCCCCCccceEEEE-ECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceE
Q 016416 177 RCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELY-DSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCG 253 (390)
Q Consensus 177 r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~y-d~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v 253 (390)
...+.++.. ++.+|++|. .+ .++.- |..-.+|+.+.. +.+.....++. -++.+|+++.. + .+
T Consensus 163 ~~~~~~~~~~~~~~~~~g~-~G------~~~~S~d~gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~~~---G----~~ 227 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSS-RG------SFYSTWEPGQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIVNG---G----KI 227 (327)
T ss_dssp CCEEEEEECTTSCEEEEET-TS------SEEEEECTTCSSCEEEEC-CSSSCEEEEEECTTSCEEEEETT---T----EE
T ss_pred cceEEEEEcCCCcEEEEEC-CC------cEEEEeCCCCCceeECCC-CCCCccceeEECCCCCEEEEeCC---c----eE
Confidence 233344333 456666542 21 13333 222568988743 33333333333 26788877532 1 23
Q ss_pred EEEeCC-CCceEEccCC--CCCCCCcCCCCCEEEEE-CCEEEEEecCCCeEEEEeCCCCceEEccCC-CccccCCCccee
Q 016416 254 EEFDLE-TRKWRKIEGM--YPNVNRAAQAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKNTWDVLGRL-PVRADLSNGWGL 328 (390)
Q Consensus 254 ~~yd~~-~~~W~~~~~~--~~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~-~~~~~~~~~~~~ 328 (390)
+..+.. -.+|+.+... +... ....++.. ++.+|++|.. +.+++-.-...+|+.+... +.+... +..
T Consensus 228 ~~s~~D~G~tW~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~g~~-g~i~~S~DgG~tW~~~~~~~~~~~~~---~~v 298 (327)
T 2xbg_A 228 AFSDPDNSENWGELLSPLRRNSV-----GFLDLAYRTPNEVWLAGGA-GALLCSQDGGQTWQQDVDVKKVPSNF---YKI 298 (327)
T ss_dssp EEEETTEEEEECCCBCTTSSCCS-----CEEEEEESSSSCEEEEEST-TCEEEESSTTSSCEECGGGTTSSSCC---CEE
T ss_pred EEecCCCCCeeEeccCCcccCCc-----ceEEEEecCCCEEEEEeCC-CeEEEeCCCCcccEEcCccCCCCCCe---EEE
Confidence 333222 4579876532 2210 11122222 5788888763 3454433345789998632 211111 112
Q ss_pred EEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016416 329 AFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 329 ~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
. ..-+++++++|. .+ .|+.++.
T Consensus 299 ~-~~~~~~~~~~G~-~G------~i~~~~~ 320 (327)
T 2xbg_A 299 L-FFSPDQGFILGQ-KG------ILLRYVT 320 (327)
T ss_dssp E-EEETTEEEEECS-TT------EEEEECC
T ss_pred E-EECCCceEEEcC-Cc------eEEEEcC
Confidence 2 224677777664 32 4666654
No 302
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=54.20 E-value=76 Score=26.22 Aligned_cols=100 Identities=10% Similarity=-0.007 Sum_probs=54.4
Q ss_pred EeCCEEEEEcccccCCeEEEEE--CCC-------------CcEeecCCC--CCCCcceeeee--eCCEEEEEeccCCCCC
Q 016416 140 AVGSELLVFGRELFDFAIWKYS--LVF-------------RSWMKCEGM--NHPRCLFGSGS--LGSIAIIAGGSDKNGH 200 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd--~~t-------------~~W~~~~~~--~~~r~~~~~~~--~~~~lyv~GG~~~~~~ 200 (390)
..++.+|+|-| +.+|+|+ +.+ ..|..++.. +. ... ++.. .++++|+|-|
T Consensus 70 ~~~g~~~fFKg----~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~-~ID-AA~~~~~~~k~yfFkG------ 137 (227)
T 3lp9_A 70 TENNEAFIFYE----NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFES-GID-AAYRSTRGKEVYLFKG------ 137 (227)
T ss_dssp CSTTEEEEEET----TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTT-CCS-EEEECSSTTEEEEEET------
T ss_pred CCCCEEEEEeC----CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCC-ccc-EEEEECCCCEEEEEEC------
Confidence 35789999987 3678888 321 123333211 11 111 2222 2689999966
Q ss_pred ccceEEEEECCCCcEEE-----cC-CCCCCC-----cCceEEE---ECCEEEEEecccCCCccCceEEEEeCCCC
Q 016416 201 VLKSAELYDSTTGRWEM-----LP-SMHSPR-----RLCSGFF---MDGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 201 ~~~~~~~yd~~t~~W~~-----~~-~~~~~r-----~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
+..|+||..+++-.. +. .+|... ...-+|. .++++|++-|. ..++||..++
T Consensus 138 --~~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~--------~Ywr~d~~~~ 202 (227)
T 3lp9_A 138 --DQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD--------HYARVKVTPX 202 (227)
T ss_dssp --TEEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT--------EEEEEECCSS
T ss_pred --CEEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC--------EEEEEECCcc
Confidence 348999987654221 11 112100 1222333 35899999553 4678988776
No 303
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=51.61 E-value=1.9e+02 Score=28.47 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=59.6
Q ss_pred cceEEEEECCCC--c-EEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCC--CceEEccCCCCCCCCc
Q 016416 202 LKSAELYDSTTG--R-WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET--RKWRKIEGMYPNVNRA 276 (390)
Q Consensus 202 ~~~~~~yd~~t~--~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~~~~~ 276 (390)
.++++++|..++ . |+.+..-....... ...-++.||+....+. ....++.+|+.+ ..|..+-+-....
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~~--- 365 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVVPESKDN--- 365 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEECCCSSE---
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEecCCCCe---
Confidence 467999999877 6 87765322222111 1235677888754432 245688899888 5798775322210
Q ss_pred CCCCCEEEEECCEEEEEec--CCCeEEEEeCCCCceEEc
Q 016416 277 AQAPPLVAVVDNQLYAVEY--LTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 277 ~~~~~~~~~~~g~l~v~gg--~~~~v~~yd~~~~~W~~v 313 (390)
...+...++.+++... ....++.+|...+.-..+
T Consensus 366 ---l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 366 ---LESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp ---EEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEEC
T ss_pred ---EEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeec
Confidence 0123445788777753 335678888755544443
No 304
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=51.32 E-value=1.1e+02 Score=25.75 Aligned_cols=71 Identities=11% Similarity=0.001 Sum_probs=42.4
Q ss_pred CceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCCCeEEE
Q 016416 227 LCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLTNMVKK 302 (390)
Q Consensus 227 ~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~~ 302 (390)
..++..+ ++.+|++... ...++.+|+....+..++--.... .-+++.. +|++++.....+.+++
T Consensus 28 ~lSGla~~~~~~~L~aV~d~------~~~I~~ld~~g~v~~~i~l~g~~D------~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINK------PAAIVEMTTNGDLIRTIPLDFVKD------LETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp CEEEEEEETTTTEEEEEEET------TEEEEEEETTCCEEEEEECSSCSS------EEEEEECSTTEEEEEETTTTEEEE
T ss_pred CcceeEEeCCCCEEEEEECC------CCeEEEEeCCCCEEEEEecCCCCC------hHHeEEeCCCEEEEEECCCCcEEE
Confidence 4455444 4789998654 345888999977777664311111 1124443 4666666656678888
Q ss_pred EeCCCCc
Q 016416 303 YDKLKNT 309 (390)
Q Consensus 303 yd~~~~~ 309 (390)
|+...+.
T Consensus 96 ~~v~~~~ 102 (255)
T 3qqz_A 96 ISLTPNS 102 (255)
T ss_dssp EEECTTC
T ss_pred EEcCCCC
Confidence 8765554
No 305
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=49.69 E-value=96 Score=27.39 Aligned_cols=72 Identities=8% Similarity=0.058 Sum_probs=38.3
Q ss_pred CCEEEEEecC-------CCeEEEEeCCCC--c---eEEc-cCCCcc-ccCCCcceeEEE-EeCCEEEEEcCCCCC-----
Q 016416 287 DNQLYAVEYL-------TNMVKKYDKLKN--T---WDVL-GRLPVR-ADLSNGWGLAFK-ACGNELLVVGGQRGP----- 346 (390)
Q Consensus 287 ~g~l~v~gg~-------~~~v~~yd~~~~--~---W~~v-~~~~~~-~~~~~~~~~~~~-~~~~~lyv~GG~~~~----- 346 (390)
++.||+.... ...|.+|+...+ . .+.+ ..+|.. ...+ .+..++ .-+|+||+.-|...+
T Consensus 80 ~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~Gd~~~~~~~q 157 (353)
T 2g8s_A 80 SRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKGYLFIALGENNQRPTAQ 157 (353)
T ss_dssp HCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSSEEEEEECCTTCGGGGG
T ss_pred CCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCCcEEEEECCCCCCCccC
Confidence 6899998532 357888876543 2 3332 234421 1111 112232 237899999775432
Q ss_pred --CCCeEEEeeecCCC
Q 016416 347 --EGENVVLNSWCPKS 360 (390)
Q Consensus 347 --~~~~~~i~~y~~~~ 360 (390)
......|+.++++.
T Consensus 158 ~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 158 DLDKLQGKLVRLTDQG 173 (353)
T ss_dssp CTTSCTTEEEEEETTS
T ss_pred CCCCCCeEEEEECCCC
Confidence 11123577888764
No 306
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=49.12 E-value=1.4e+02 Score=26.47 Aligned_cols=201 Identities=11% Similarity=0.014 Sum_probs=100.8
Q ss_pred ccEEEEEeCCC----eeEEEecCCCceeeCCCC---CCCccc----CCCCeeEEEe-----CCEEEEEcccccCCeEEEE
Q 016416 97 EHWVYLVCDPR----GWEAFDPMKKKWMALPKI---PCDECF----NHADKESLAV-----GSELLVFGRELFDFAIWKY 160 (390)
Q Consensus 97 ~~~l~~~~~~~----~~~~~d~~~~~W~~l~~~---p~~~~~----~~~~~~~~~~-----~~~iy~~Gg~~~~~~~~~y 160 (390)
...+|+.+... .++..+....+|..+... +..... .......++. .+.||+.+. ...+++.
T Consensus 67 ~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~---~ggl~~S 143 (394)
T 3b7f_A 67 PERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS---PQGLFRS 143 (394)
T ss_dssp TTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE---TTEEEEE
T ss_pred CCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec---CCcEEEE
Confidence 45677765433 577777777889887532 111000 0000111222 467776542 2367888
Q ss_pred ECCCCcEeecCCC---CC--------------CCcceeeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016416 161 SLVFRSWMKCEGM---NH--------------PRCLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 161 d~~t~~W~~~~~~---~~--------------~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
+-...+|+.+... |. ....+.++.. .+.||+.... ..+++.+-...+|+.+..
T Consensus 144 ~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~ 216 (394)
T 3b7f_A 144 TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNR 216 (394)
T ss_dssp SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCT
T ss_pred cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceECCC
Confidence 8788899887431 11 1111233322 2567765331 236666666778998753
Q ss_pred C------CCC-----CcCceEEEE-C--CEEEEEecccCCCccCceEEEEeCCCCceEEccC-CCCCCCCcCCCCCEEEE
Q 016416 221 M------HSP-----RRLCSGFFM-D--GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG-MYPNVNRAAQAPPLVAV 285 (390)
Q Consensus 221 ~------~~~-----r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~ 285 (390)
- |.+ ...+..+.. + +.||+.. ...+++++-...+|+.+.. ++... ......++.
T Consensus 217 ~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--------~~gl~~s~D~G~tW~~~~~~l~~~~---~~~~~~i~~ 285 (394)
T 3b7f_A 217 GCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--------HCGIYRMDRREGVWKRIGDAMPREV---GDIGFPIVV 285 (394)
T ss_dssp TCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--------TTEEEEEETTTTEEECGGGGSCTTT---CSCEEEEEE
T ss_pred CccccccCCCccccCcceeEEEECCCCCCEEEEEc--------CCeEEEeCCCCCcceECCCCCCCCC---ccceEEEEE
Confidence 1 111 111222322 1 6777742 1347788888899998864 33210 011112333
Q ss_pred ---ECCEEEEEec------------CCCeEEEEeCCCCceEEcc-CCCc
Q 016416 286 ---VDNQLYAVEY------------LTNMVKKYDKLKNTWDVLG-RLPV 318 (390)
Q Consensus 286 ---~~g~l~v~gg------------~~~~v~~yd~~~~~W~~v~-~~~~ 318 (390)
..+.||+... ....+++-.-...+|+.+. .+|.
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~ 334 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT 334 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence 2467888631 1123443322336899985 3443
No 307
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=49.10 E-value=1.7e+02 Score=27.20 Aligned_cols=71 Identities=13% Similarity=-0.010 Sum_probs=37.8
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCC----cEEEcC---CCC--CCC-cCceEEEE-CCEEEEEecccCCCccCceEE
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTG----RWEMLP---SMH--SPR-RLCSGFFM-DGKFYVIGGMSSPTVSLTCGE 254 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~----~W~~~~---~~~--~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 254 (390)
..++|+-|.. .+.+.++|..++ +-..+- .+. ... ..|..... +| |||..--+..+.....+.
T Consensus 95 r~~l~v~~l~------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 95 RRFLIVPGLR------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp SCEEEEEBTT------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred CCEEEEccCC------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 4567776553 356899998776 222211 010 011 22333333 56 887542222223457799
Q ss_pred EEeCCCCce
Q 016416 255 EFDLETRKW 263 (390)
Q Consensus 255 ~yd~~~~~W 263 (390)
.+|..|.+=
T Consensus 168 vlD~~T~~v 176 (462)
T 2ece_A 168 MLDHYSFEP 176 (462)
T ss_dssp EECTTTCCE
T ss_pred EEECCCCeE
Confidence 999998763
No 308
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=48.66 E-value=1.4e+02 Score=26.18 Aligned_cols=180 Identities=11% Similarity=-0.016 Sum_probs=89.1
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee--e
Q 016416 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG--S 184 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~ 184 (390)
..+..+|+.+.+..... .... ......+..++.+++.+. ...+.+++..+++................+ .
T Consensus 157 ~~i~iwd~~~~~~~~~~--~~~~---~V~~v~fspdg~~l~s~s---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs 228 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEI--ETRG---EVKDLHFSTDGKVVAYIT---GSSLEVISTVTGSCIARKTDFDKNWSLSKINFI 228 (365)
T ss_dssp CEEEEEETTTTEEEEEE--ECSS---CCCEEEECTTSSEEEEEC---SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEE
T ss_pred CEEEEeECCCCcEEEEe--CCCC---ceEEEEEccCCceEEecc---ceeEEEEEeccCcceeeeecCCCCCCEEEEEEc
Confidence 45667787766543221 1100 011112233556555554 345677887777654332222222222222 2
Q ss_pred eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCC
Q 016416 185 LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLET 260 (390)
Q Consensus 185 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~ 260 (390)
-++..++.++.+... ...+..+|.......... .+........++.+ +|++.+.|+.++ .|..||..+
T Consensus 229 pdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~------~V~iwd~~~ 300 (365)
T 4h5i_A 229 ADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN------SIALVKLKD 300 (365)
T ss_dssp ETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS------CEEEEETTT
T ss_pred CCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC------EEEEEECCC
Confidence 367777777765432 234666776665543321 11111112222222 778877777643 477899987
Q ss_pred CceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCC
Q 016416 261 RKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 261 ~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~ 307 (390)
.+-.. .+... +......++. -+|++++-|+.-+.|.+||...
T Consensus 301 ~~~~~--~~~~g---H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 301 LSMSK--IFKQA---HSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TEEEE--EETTS---SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CcEEE--EecCc---ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 65321 11110 0001111222 3678788787788999998754
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=48.50 E-value=1.3e+02 Score=26.46 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=56.9
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC-----CEEEEEecCC-----CeEEEE
Q 016416 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD-----NQLYAVEYLT-----NMVKKY 303 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----g~l~v~gg~~-----~~v~~y 303 (390)
+|+|||.-- ...|.+++ +.+.+.+..++.. .........++... +.||+..... +.|.+|
T Consensus 41 dG~l~V~e~-------~g~I~~i~--~g~~~~~~~~~v~-~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 41 DGGMLIAER-------PGRIRLFR--EGRLSTYAELSVY-HRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp TSCEEEEET-------TTEEEEEE--TTEEEEEEECCCC-CSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred CCeEEEEeC-------CCeEEEEE--CCCccEeecceEe-ecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 567777621 13566676 3444444333210 00011122345443 5899986432 679999
Q ss_pred eCCCCceE---Ec-cCCCc-cccCCCcceeEEE-EeCCEEEEEcCCCCCC-------CCeEEEeeecCCC
Q 016416 304 DKLKNTWD---VL-GRLPV-RADLSNGWGLAFK-ACGNELLVVGGQRGPE-------GENVVLNSWCPKS 360 (390)
Q Consensus 304 d~~~~~W~---~v-~~~~~-~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~-------~~~~~i~~y~~~~ 360 (390)
+...+... .+ ..+|. ....+ .+..++ .-+|+||+.-|..++. .....|+.++++.
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 88765432 22 22442 11111 112222 2378999987754321 1223588888764
No 310
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=47.74 E-value=1.7e+02 Score=26.82 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=40.4
Q ss_pred CCEEEEEecccCC---CccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECC--EEEEEecCCCeEEEEeCCC
Q 016416 234 DGKFYVIGGMSSP---TVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDN--QLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 234 ~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g--~l~v~gg~~~~v~~yd~~~ 307 (390)
++++|+.-..... ....+.+.++|..+.+=. ..++.+. ....+++ -+| ++|+.....+.|.++|..+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv--~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI--NKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--EEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEE--EEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 4789997532111 112467999999886532 2222211 0112333 334 5777776789999999877
Q ss_pred Cce
Q 016416 308 NTW 310 (390)
Q Consensus 308 ~~W 310 (390)
.+=
T Consensus 403 ~kv 405 (426)
T 3c75_H 403 GEE 405 (426)
T ss_dssp CCE
T ss_pred CCE
Confidence 653
No 311
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=46.71 E-value=2.1e+02 Score=27.60 Aligned_cols=198 Identities=10% Similarity=-0.009 Sum_probs=102.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee----eCCEEEEEeccCC----C-------CCccceEE
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS----LGSIAIIAGGSDK----N-------GHVLKSAE 206 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~----~~~~lyv~GG~~~----~-------~~~~~~~~ 206 (390)
+..+|+.- .....+.+.|..+.+-..+-.+|.....|+.+. -++++|+.+.... + ....+.+-
T Consensus 101 G~~lfVnd--~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 101 GRFLFMND--KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEE--TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCEEEEEc--CCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 45667633 245679999999987555435665555666664 3578888763211 1 12456788
Q ss_pred EEECCCCc--EEEc-CCCCCCCcCceEEEEC-CEEEEEeccc-------------------------------CCCccCc
Q 016416 207 LYDSTTGR--WEML-PSMHSPRRLCSGFFMD-GKFYVIGGMS-------------------------------SPTVSLT 251 (390)
Q Consensus 207 ~yd~~t~~--W~~~-~~~~~~r~~~~~~~~~-~~iyv~GG~~-------------------------------~~~~~~~ 251 (390)
+.|..+.+ |+.. +.-|. ...+..+ +.+|+..-.+ +.....+
T Consensus 179 vID~~t~~v~~qI~Vgg~pd----~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLD----NCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEETTTTEEEEEEEESSCCC----CEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEECCCCeEEEEEEeCCCcc----ceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 99999875 5532 22111 1112122 2333332111 0111234
Q ss_pred eEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEE-EECC-EEEEEecCCCeEEEEeCCCCc-e---------EEccCCCc
Q 016416 252 CGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVA-VVDN-QLYAVEYLTNMVKKYDKLKNT-W---------DVLGRLPV 318 (390)
Q Consensus 252 ~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~-~~~g-~l~v~gg~~~~v~~yd~~~~~-W---------~~v~~~~~ 318 (390)
.+-+.|..+.+... +..+|.+.. .+++. .-+| .+|+.+...+.|.+||.++.+ + ..+..++.
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~~-----PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIANN-----PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEESS-----CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred cEEEEeCcccCCceeEEEEecCCC-----ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 57778888733222 122222211 12233 3345 577777788999999998652 1 11223332
Q ss_pred cccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 319 RADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.... -+....-+|.+|+.-..++ +|.+||.++
T Consensus 330 G~gP----~h~aF~~dG~aY~t~~lds------qV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGP----LHTAFDGRGNAYTSLFLDS------QVVKWNIED 361 (595)
T ss_dssp CSCE----EEEEECTTSEEEEEETTTT------EEEEEEHHH
T ss_pred CCCc----ceEEECCCCeEEEEEecCC------cEEEEEhhH
Confidence 2211 1323333568888876553 455676654
No 312
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=45.53 E-value=1.7e+02 Score=26.34 Aligned_cols=62 Identities=10% Similarity=0.033 Sum_probs=37.0
Q ss_pred CCEEEEEec---------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCC--EEEEEcCCCCCCCCeEEEee
Q 016416 287 DNQLYAVEY---------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGN--ELLVVGGQRGPEGENVVLNS 355 (390)
Q Consensus 287 ~g~l~v~gg---------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~--~lyv~GG~~~~~~~~~~i~~ 355 (390)
++++|+.-. ..+.|+++|..+.+-.. .++.+.. -++.++ .-++ .||+..+.++ +|.+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~--~i~vg~~---~~~lav-s~D~~~~ly~tn~~~~------~VsV 358 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--KFEMGHE---IDSINV-SQDEKPLLYALSTGDK------TLYI 358 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--EEEEEEE---ECEEEE-CSSSSCEEEEEETTTT------EEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEE--EEECCCC---cceEEE-CCCCCeEEEEEcCCCC------eEEE
Confidence 578999742 23689999998876443 3322221 123333 2343 5787665332 6889
Q ss_pred ecCCC
Q 016416 356 WCPKS 360 (390)
Q Consensus 356 y~~~~ 360 (390)
||..+
T Consensus 359 iD~~t 363 (386)
T 3sjl_D 359 HDAES 363 (386)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99987
No 313
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=44.20 E-value=2e+02 Score=29.15 Aligned_cols=104 Identities=8% Similarity=-0.013 Sum_probs=51.8
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEE
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK 265 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 265 (390)
++.+.+.|+.+ ..+.+||..+..-.... .....-..++...|++.+.++.+ ..+..+|+.+.+-..
T Consensus 28 dg~~lAsgs~D------g~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg~~L~S~s~D------~~v~lWd~~~~~~~~ 93 (902)
T 2oaj_A 28 TQNLLAIATVT------GEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKGIYLVVINAK------DTVYVLSLYSQKVLT 93 (902)
T ss_dssp TTTEEEEEETT------SEEEEECSTTCEEEEEC--SSCCCEEEEEEETTTEEEEEETT------CEEEEEETTTCSEEE
T ss_pred CCCEEEEEeCC------CEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCCCEEEEEECc------CeEEEEECCCCcEEE
Confidence 44555666543 24667776554432221 11111122333445534444332 357788988765432
Q ss_pred ccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCce
Q 016416 266 IEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
.-..+. ....++ .-++..++.|...+.|..||..+.+-
T Consensus 94 ~~~~~~-------~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 94 TVFVPG-------KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp EEECSS-------CEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred EEcCCC-------CEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 111111 000111 12566677777788999999988764
No 314
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=42.83 E-value=14 Score=32.98 Aligned_cols=102 Identities=10% Similarity=0.090 Sum_probs=47.2
Q ss_pred eEEEEECCCCc--EEEcCC----CCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcC
Q 016416 204 SAELYDSTTGR--WEMLPS----MHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAA 277 (390)
Q Consensus 204 ~~~~yd~~t~~--W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~ 277 (390)
.++.+|..+++ |+.-.. +-..+.... ..++.+|++.... -..++.||..++.|.--..++......+
T Consensus 21 ~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~--~~~~~~~vv~p~~-----dG~l~a~~~~~G~~~~~~~~~~lv~~SP 93 (339)
T 2be1_A 21 GLHAVDRRNGHIIWSIEPENFQPLIEIQEPSR--LETYETLIIEPFG-----DGNIYYFNAHQGLQKLPLSIRQLVSTSP 93 (339)
T ss_dssp CEEEEETTTTEEEEEECGGGSCCSEECCCSCT--TTSSEEEEECCST-----TTEEEEEETTTEEEEEEEEHHHHHTTCS
T ss_pred eEEEEECCCCcEEEEecCCccCCcEEecCCcc--ccCCcEEEEEECC-----CCEEEEEECCCCcEEeeeccccceeccc
Confidence 37788888774 876332 111111110 1255677664221 2347778888776542212111100000
Q ss_pred -CCCCEEEE------ECCEEEEEecCCCeEEEEeCCCCc--eEE
Q 016416 278 -QAPPLVAV------VDNQLYAVEYLTNMVKKYDKLKNT--WDV 312 (390)
Q Consensus 278 -~~~~~~~~------~~g~l~v~gg~~~~v~~yd~~~~~--W~~ 312 (390)
+.....++ ..+...++|...+.++..|..+++ |+.
T Consensus 94 ~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 94 LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp EEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 00000111 134444555556678888887774 665
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=42.35 E-value=1.8e+02 Score=25.77 Aligned_cols=142 Identities=11% Similarity=0.052 Sum_probs=76.4
Q ss_pred CCeEEEEECCC--CcEeecCCCC-----CCCcceeeeee---CC--EEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016416 154 DFAIWKYSLVF--RSWMKCEGMN-----HPRCLFGSGSL---GS--IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 154 ~~~~~~yd~~t--~~W~~~~~~~-----~~r~~~~~~~~---~~--~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
...+++||+.+ .+-..+.... .....|+.... ++ .|||+-.... ...-+++.+|+.++....+...
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~--~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS--SSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTT--CCEEEEEEEETTTTEEEEEEEE
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCC--CCeEEEEEEECCCCEEEEEecc
Confidence 45789999873 3444432211 12234555543 23 5788754321 1234566677776666554332
Q ss_pred ---CCCCcCceEEEECCEEEEEecc--cC---------CCccCceEEEEeCCCCceEEccC-CCCCCCCcCCCCCEEEEE
Q 016416 222 ---HSPRRLCSGFFMDGKFYVIGGM--SS---------PTVSLTCGEEFDLETRKWRKIEG-MYPNVNRAAQAPPLVAVV 286 (390)
Q Consensus 222 ---~~~r~~~~~~~~~~~iyv~GG~--~~---------~~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~ 286 (390)
+..+.+-..+.-+|.+|+-+.. .. .......+++||+. +.+.+.. +.. ...++..
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~--------pNGia~s 229 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDF--------ANGINIS 229 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESS--------EEEEEEC
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcc--------cCcceEC
Confidence 2223333444568998886431 11 01124568899984 4444321 211 0124433
Q ss_pred -C-CEEEEEecCCCeEEEEeCCC
Q 016416 287 -D-NQLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 287 -~-g~l~v~gg~~~~v~~yd~~~ 307 (390)
+ ..||+.....+.|++||...
T Consensus 230 pDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 230 PDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCCEEEEEeCCCCeEEEEEECC
Confidence 3 47999988888999999764
No 316
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=41.66 E-value=2.4e+02 Score=26.83 Aligned_cols=110 Identities=9% Similarity=0.072 Sum_probs=58.8
Q ss_pred EEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEc
Q 016416 189 AIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI 266 (390)
Q Consensus 189 lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 266 (390)
.++.|+.++ .+.+||..+.+... .+.........+.+ ++++++.|+.++ .+..||..+.+-...
T Consensus 162 ~l~s~s~D~------~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D~------~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 162 RIISGSDDN------TVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGDG------TIVLYNGVDGTKTGV 227 (611)
T ss_dssp EEEEEETTS------CEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEE
T ss_pred EEEEEeCCC------eEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECCC------cEEEEECCCCcEeee
Confidence 566666543 47788877655432 12222222223333 677777777543 467788877764332
Q ss_pred c-CCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEE
Q 016416 267 E-GMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 267 ~-~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~ 312 (390)
- ........+......++. -+|+.++.++.-+.+..||..+.+...
T Consensus 228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence 1 100000001111111222 267777778778899999998877654
No 317
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=41.28 E-value=2.7e+02 Score=27.45 Aligned_cols=155 Identities=11% Similarity=-0.025 Sum_probs=79.2
Q ss_pred EEEEEcccccCCeEEEEECCCC--cE--eecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCC-CcEEE
Q 016416 144 ELLVFGRELFDFAIWKYSLVFR--SW--MKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTT-GRWEM 217 (390)
Q Consensus 144 ~iy~~Gg~~~~~~~~~yd~~t~--~W--~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W~~ 217 (390)
.|++.......+.++++|..+. .+ +.+.+-.. -..+... ..++.+|+....+.. ....++.+|..+ ..|+.
T Consensus 284 ~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~-~~~~s~~~~~g~~l~~~t~~~~a--~~~~L~~~d~~~~~~~~~ 360 (751)
T 2xe4_A 284 TLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK-GVRYDVQMHGTSHLVILTNEGGA--VNHKLLIAPRGQPSDWSH 360 (751)
T ss_dssp EEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT-TCCEEEEEETTTEEEEEECTTTC--TTCEEEEEETTSTTCCCC
T ss_pred EEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC-CceEEEeeeeCCEEEEEeCCCCC--CCcEEEEEcCCCccccee
Confidence 4444443334568888998765 45 44432111 1112222 237788888654311 235788899876 67875
Q ss_pred -c-CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeC-------CCCc-eEEccCCCCCCCCcCCCCCEEEE--
Q 016416 218 -L-PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDL-------ETRK-WRKIEGMYPNVNRAAQAPPLVAV-- 285 (390)
Q Consensus 218 -~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~-------~~~~-W~~~~~~~~~~~~~~~~~~~~~~-- 285 (390)
+ +.- ....-......++.|++....++ ...++.+|+ .+.. -..+. ++... .....
T Consensus 361 ~li~~~-~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~~~~~~~~~g~~~~~l~-l~~~~-------~~~~~~~ 427 (751)
T 2xe4_A 361 VLVDHS-EDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMADSQDGVFKAGTGLREVV-MEEPI-------FTVHLVE 427 (751)
T ss_dssp EEECCC-SSEEEEEEEECSSEEEEEEEETT----EEEEEEEECCTTTSCCCTTTCCEECC-CCCSS-------CEEEECG
T ss_pred eEECCC-CCcEEEEEEEECCEEEEEEEeCC----EEEEEEEecccccccccCCccceEEC-CCCce-------eEEEecc
Confidence 3 321 11111122334677777765432 456788886 3444 44443 22210 01111
Q ss_pred -----EC-CEEEEE-ecC--CCeEEEEeCCCCceEEcc
Q 016416 286 -----VD-NQLYAV-EYL--TNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 286 -----~~-g~l~v~-gg~--~~~v~~yd~~~~~W~~v~ 314 (390)
.+ +.+++. ... ...++.||..+++.+.+.
T Consensus 428 ~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 428 SQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp GGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEE
T ss_pred CcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 12 334333 332 357888999888776664
No 318
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=40.50 E-value=1.6e+02 Score=28.66 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=70.3
Q ss_pred eEEEeCCEEEEEcccccCCeEEEEECCCC-cE--eec----CCCCCCCcceeeee---eCCEEEEEeccCCCCCccceEE
Q 016416 137 ESLAVGSELLVFGRELFDFAIWKYSLVFR-SW--MKC----EGMNHPRCLFGSGS---LGSIAIIAGGSDKNGHVLKSAE 206 (390)
Q Consensus 137 ~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~-~W--~~~----~~~~~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~ 206 (390)
++....+.+|+|-|. .+|+++.... .. ..+ +.+|.. ..++. .++++|+|-| +..|
T Consensus 448 Ait~~rg~~yfFKg~----~yWr~~~~~~~~~~P~~Is~~wp~LP~~---IDAA~~~~~~~k~yFFkG--------~~yW 512 (631)
T 1ck7_A 448 GIAQIRGEIFFFKDR----FIWRTVTPRDKPMGPLLVATFWPELPEK---IDAVYEAPQEEKAVFFAG--------NEYW 512 (631)
T ss_dssp EEEECSSSEEEECSS----EEEEESCTTSCCEEEEEGGGTCTTSCSS---CSBCCEETTTTEEEEEET--------TEEE
T ss_pred eeEecCCcEEEEcCC----EEEEEcCCCCCCCCceeccccCCCCCcc---ceEEEEECCCCEEEEEec--------CEEE
Confidence 345568889988763 5677665432 11 111 122321 22222 2678999965 3478
Q ss_pred EEECCCC--cE-EEcCC--CCCCCcCceEEE---ECCEEEEEecccCCCccCceEEEEeCCCCceE-----EccCCCCCC
Q 016416 207 LYDSTTG--RW-EMLPS--MHSPRRLCSGFF---MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-----KIEGMYPNV 273 (390)
Q Consensus 207 ~yd~~t~--~W-~~~~~--~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~~~~~~~ 273 (390)
+|+..+- -+ +.|.. +|......-+|. .++++|++-|. ..++||..+++=. .+...-..
T Consensus 513 ry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG~--------~ywryd~~~~~vd~gYPk~i~~~w~G- 583 (631)
T 1ck7_A 513 IYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPGFPKLIADAWNA- 583 (631)
T ss_dssp EEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEETT--------EEEEEETTTTEECTTCCEETTTSCSS-
T ss_pred EECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEECC--------EEEEEcCCcccccCCCCcchHhhcCC-
Confidence 8885310 01 11211 121101112222 36899999553 4788997765311 11110000
Q ss_pred CCcCCCCCEEEEEC--CEEEEEecCCCeEEEEeCCCC
Q 016416 274 NRAAQAPPLVAVVD--NQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 274 ~~~~~~~~~~~~~~--g~l~v~gg~~~~v~~yd~~~~ 308 (390)
.+...-++...+ |++|++-| +..++||..+.
T Consensus 584 --~p~~iDAAf~~~~~g~~YFFkG--~~Ywr~d~~~~ 616 (631)
T 1ck7_A 584 --IPDNLDAVVDLQGGGHSYFFKG--AYYLKLENQSL 616 (631)
T ss_dssp --CCTTCCEEECCTTSCBCEEEET--TEEECCBTTBT
T ss_pred --CCCCCcEeEEEcCCCeEEEEEC--CEEEEEeCccc
Confidence 011112233333 78999865 46788887654
No 319
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=39.85 E-value=2.3e+02 Score=26.15 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=37.0
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceE-----Ecc-CCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 287 DNQLYAVEYLTNMVKKYDKLKNTWD-----VLG-RLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~W~-----~v~-~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++++|++-| +..|+||..+++-. .|. ..|..... . -+++..++++|.|-|.. .+.||..+
T Consensus 367 ~~k~yfFkG--~~yw~yd~~~~~~~~gYPk~I~~~fpgip~~---i-DAA~~~~g~~YFFkg~~--------ywr~d~~~ 432 (450)
T 1su3_A 367 TGKTYFFVA--NKYWRYDEYKRSMDPGYPKMIAHDFPGIGHK---V-DAVFMKDGFFYFFHGTR--------QYKFDPKT 432 (450)
T ss_dssp TTEEEEEET--TEEEEEETTTTEECSSCSEEHHHHSTTSCSC---C-SEEEEETTEEEEEETTE--------EEEEETTT
T ss_pred CCeEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCCCCC---c-cEEEEcCCeEEEEeCCE--------EEEEECCc
Confidence 589999966 68999997654321 121 11111111 1 23445789999998843 67888765
No 320
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=39.77 E-value=1.5e+02 Score=26.68 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=39.3
Q ss_pred CceEEEEeCCCC--ceEEccCCCCCCCCcCCCCCEEEEE---------CCEEEEEecCCCeEEEEeCCCC-ceEEcc
Q 016416 250 LTCGEEFDLETR--KWRKIEGMYPNVNRAAQAPPLVAVV---------DNQLYAVEYLTNMVKKYDKLKN-TWDVLG 314 (390)
Q Consensus 250 ~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~---------~g~l~v~gg~~~~v~~yd~~~~-~W~~v~ 314 (390)
...+..||+.|+ +=...-.+|............+++- ++.+|+.+.....+.+||..++ +|....
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~ 198 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH 198 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc
Confidence 346888999998 6543333332111111111223333 4578988876789999999987 588764
No 321
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=39.33 E-value=1.7e+02 Score=30.62 Aligned_cols=155 Identities=12% Similarity=0.019 Sum_probs=73.5
Q ss_pred CceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE---CCEEEEEec----CCCe
Q 016416 227 LCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV---DNQLYAVEY----LTNM 299 (390)
Q Consensus 227 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~g~l~v~gg----~~~~ 299 (390)
++++...++.+ ++|.-.. ......++.|+.....|-.-.............+..+++. ++..+++|. ..+.
T Consensus 336 GfSa~~t~d~~-~~GapG~-~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~~~~~G~ 413 (1095)
T 3k6s_A 336 GFSAVFTPDGP-VLGAVGS-FTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRYQHTGK 413 (1095)
T ss_dssp TSSEECCTTCC-EEEESCS-TTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETTGGGTCE
T ss_pred cccceecCCcc-eEccccc-CCccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEcccccccce
Confidence 45555554444 6764332 1234557778776554432221111111111122233321 234667773 4578
Q ss_pred EEEEeCCCCceEEccCCCccccCCCcceeEEEEe--C----CEEEEEcCCCC-CCCCeEEEeeecCCCCCCCCCCceEEe
Q 016416 300 VKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC--G----NELLVVGGQRG-PEGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 300 v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~--~----~~lyv~GG~~~-~~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
+++|......|.....+...... +++|.++++. | .-|+++|.-.. .......+++|.-.. +...|...
T Consensus 414 V~i~~~~~~~~~~~~~~~g~~~g-s~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~----~~~~~~~~ 488 (1095)
T 3k6s_A 414 AVIFTQVSRQWRMKAEVTGTQIG-SYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPR----GWRRWWCD 488 (1095)
T ss_dssp EEEEECCTTTCCEEEEECCSSTT-SCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCS----STTCCCSC
T ss_pred EEEEEecCCcceEEeecccCccc-CcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCC----CCcceeee
Confidence 99998888889886544322211 1234444442 2 24777874221 111223477775433 11346533
Q ss_pred cccC-----ccCeEEeeeeee
Q 016416 373 AEKQ-----HVGVFVYNCAVL 388 (390)
Q Consensus 373 ~~~p-----~~~~~~~~~~~~ 388 (390)
..+. ...+|..+.+++
T Consensus 489 ~~l~g~~~~~~~~FG~sva~~ 509 (1095)
T 3k6s_A 489 AVLYGEQGHPWGRFGAALTVL 509 (1095)
T ss_dssp SSCCCCCSCSSCCBTSCEEEE
T ss_pred EEeecccCCccccCccceEee
Confidence 2221 245677766654
No 322
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=37.96 E-value=2e+02 Score=24.97 Aligned_cols=222 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred CCEEEEEccc------c------cCCeEEEEECC-CCcEeecCCC----CCCCcceeeeeeCCEEEEEeccCCCCCccce
Q 016416 142 GSELLVFGRE------L------FDFAIWKYSLV-FRSWMKCEGM----NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKS 204 (390)
Q Consensus 142 ~~~iy~~Gg~------~------~~~~~~~yd~~-t~~W~~~~~~----~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 204 (390)
++.+|++... . ....+.+|+.. .++....-.. ...........-+++.+++.... ...
T Consensus 94 g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-----~~~ 168 (365)
T 1jof_A 94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----ANK 168 (365)
T ss_dssp CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----TTE
T ss_pred CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-----CCE
Q ss_pred EEEEECC-CCcEEEcCCCCCC--CcCceEEEE---CCEEEEEecccCCCccCceEEEEeCCCCc----eEEccCCCCCCC
Q 016416 205 AELYDST-TGRWEMLPSMHSP--RRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRK----WRKIEGMYPNVN 274 (390)
Q Consensus 205 ~~~yd~~-t~~W~~~~~~~~~--r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~~~ 274 (390)
+.+||.. +++.+.+.....+ -.....+.+ +..+|+.+..++ .-.++.+|..+++ ...+..++....
T Consensus 169 v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~----~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN----RICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT----EEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC----eEEEEEEeCCCCcEEEccceEEcCCCCcC
Q ss_pred CcC-------CCCCEE-EEECC-EEEEEecCCC-----eEEEEeCC-CCceEE----ccCCCccccCCCcceeEEEE---
Q 016416 275 RAA-------QAPPLV-AVVDN-QLYAVEYLTN-----MVKKYDKL-KNTWDV----LGRLPVRADLSNGWGLAFKA--- 332 (390)
Q Consensus 275 ~~~-------~~~~~~-~~~~g-~l~v~gg~~~-----~v~~yd~~-~~~W~~----v~~~~~~~~~~~~~~~~~~~--- 332 (390)
.+. ...... ..-+| .||+.....+ .+.+||.. +++... +......... .++..
T Consensus 245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~-----~a~sp~~~ 319 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHS-----NAVSPCPW 319 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTC-----CCEEECTT
T ss_pred CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccc-----ceecCCCc
Q ss_pred eCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccC-ccCeEEeeeeeec
Q 016416 333 CGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQ-HVGVFVYNCAVLG 389 (390)
Q Consensus 333 ~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p-~~~~~~~~~~~~~ 389 (390)
-++.||+.+..++ .|.+|+.+. ..=+.++..+ +...+...|+-++
T Consensus 320 dg~~l~v~~~~~~------~v~v~~~~~------~~l~~~~~~~~~~p~~~~~~~~~~ 365 (365)
T 1jof_A 320 SDEWMAITDDQEG------WLEIYRWKD------EFLHRVARVRIPEPGFGMNAIWYD 365 (365)
T ss_dssp CTTEEEEECSSSC------EEEEEEEET------TEEEEEEEEECCSTTEEEEEEEEC
T ss_pred CCCEEEEEEcCCC------eEEEEEEch------hhCceeeEEEcCCCcceeeeEecC
No 323
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=37.90 E-value=1.9e+02 Score=25.95 Aligned_cols=65 Identities=17% Similarity=0.056 Sum_probs=37.8
Q ss_pred CeEEEEeCCCC--ceEEccCCCccccCCCcceeEEEEe---------CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCC
Q 016416 298 NMVKKYDKLKN--TWDVLGRLPVRADLSNGWGLAFKAC---------GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGT 366 (390)
Q Consensus 298 ~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~~~~~---------~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~ 366 (390)
.++..||+.++ +=.+.-.+|.........-..+++. ++.+||.--.. ..+.+||..++
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~------~gLIVydl~~~----- 191 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLR------GALFIYDHKKQ----- 191 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTT------TEEEEEETTTT-----
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCC------CcEEEEECCCC-----
Confidence 37889999998 6554444443211111111233333 35678766311 25889999985
Q ss_pred CceEEec
Q 016416 367 LDWKVLA 373 (390)
Q Consensus 367 ~~W~~~~ 373 (390)
..|+.+.
T Consensus 192 ~swRv~~ 198 (381)
T 3q6k_A 192 DSWNVTH 198 (381)
T ss_dssp EEEEEEC
T ss_pred cEEEEcc
Confidence 6899884
No 324
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=37.88 E-value=19 Score=21.25 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=19.0
Q ss_pred CCCCCCCCCChHHHHHHHhhhcccc
Q 016416 41 GPSDSLLPGLVDDVALNCLAFACTS 65 (390)
Q Consensus 41 ~~~~~~~~~LP~dl~~~iL~rlp~~ 65 (390)
.-+..-+..||.||.+|+|+--...
T Consensus 15 ~VD~eVF~~LP~dIQ~Ells~~~~e 39 (48)
T 2kwv_A 15 GVDQEVFKQLPADIQEEILSGKSRE 39 (48)
T ss_dssp TCCGGGTTTSCHHHHHHHTTCCCSC
T ss_pred CCCHHHHHHCcHHHHHHHHhcchHH
Confidence 3445668899999999999865544
No 325
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=36.62 E-value=1.7e+02 Score=23.81 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=72.8
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCCc-E--eec----CCCCCCCcceeeee---eCCEEEEEeccCCCCCccceEEE
Q 016416 138 SLAVGSELLVFGRELFDFAIWKYSLVFRS-W--MKC----EGMNHPRCLFGSGS---LGSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~-W--~~~----~~~~~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
+...++.+|+|-|. .+|+++..... . ..+ +.+|. ...++. .++++|+|-| +..|+
T Consensus 36 i~~~~g~~~fFkg~----~~Wr~~~~~~~~~~P~~I~~~wp~lp~---~IDAA~~~~~~~k~yfFkG--------~~yW~ 100 (218)
T 1gen_A 36 IAQIRGEIFFFKDR----FIWRTVTPRDKPMGPLLVATFWPELPE---KIDAVYEAPQEEKAVFFAG--------NEYWI 100 (218)
T ss_dssp EEEETTEEEEEETT----EEEEESSTTSCCEEEEEGGGTCTTSCS---CCSEEEEETTTTEEEEEET--------TEEEE
T ss_pred EEeCCCcEEEEECC----EEEEEeCCCCccCCCEEHHHhcCCCCC---CccEEEEECCCCEEEEEeC--------CEEEE
Confidence 44568899998763 45666544321 1 111 22332 222332 2689999965 34788
Q ss_pred EECCCCc--E-EEcCC--CCCCCcCceEEE---ECCEEEEEecccCCCccCceEEEEeCCCCceEE-----cc-CCCCCC
Q 016416 208 YDSTTGR--W-EMLPS--MHSPRRLCSGFF---MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-----IE-GMYPNV 273 (390)
Q Consensus 208 yd~~t~~--W-~~~~~--~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-----~~-~~~~~~ 273 (390)
||..+-. . +.+.. +|......-+|. .++++|++-|. ..++||..+++-.. +. ..+. .
T Consensus 101 y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~--------~ywr~d~~~~~v~~gyPr~i~~~w~g-~ 171 (218)
T 1gen_A 101 YSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPGFPKLIADAWNA-I 171 (218)
T ss_dssp EETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCCEEHHHHSSS-C
T ss_pred EcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC--------EEEEEECccccccCCCCcchhhccCC-C
Confidence 8852110 0 11222 222111222333 26899999553 47889987764211 11 0110 0
Q ss_pred CCcCCCCCEEEEEC--CEEEEEecCCCeEEEEeCCCCc
Q 016416 274 NRAAQAPPLVAVVD--NQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 274 ~~~~~~~~~~~~~~--g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
+...-++...+ |.+|.+-| +..++||..+..
T Consensus 172 ---p~~idaAf~~~~~g~~YfFkg--~~y~~~~~~~~~ 204 (218)
T 1gen_A 172 ---PDNLDAVVDLQGGGHSYFFKG--AYYLKLENQSLK 204 (218)
T ss_dssp ---CSSCSEEEECTTTCEEEEEET--TEEEEEETTEEE
T ss_pred ---CCCCCEEEEEcCCCcEEEEEC--CEEEEEECCcee
Confidence 11122344443 89999965 578899876544
No 326
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=36.54 E-value=2.1e+02 Score=24.78 Aligned_cols=65 Identities=8% Similarity=-0.014 Sum_probs=36.4
Q ss_pred CCEEEEEecccCCCccCce-EEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCC
Q 016416 234 DGKFYVIGGMSSPTVSLTC-GEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~-v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~ 308 (390)
++++.+.|+.++ . +..||..+.+-... +.... +......++. -+|++++.++..+.+.+||....
T Consensus 206 ~g~~l~s~s~d~------~~v~iwd~~~~~~~~~--~~~g~--h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 206 KSDMVATCSQDG------TIIRVFKTEDGVLVRE--FRRGL--DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TSSEEEEEETTC------SEEEEEETTTCCEEEE--EECTT--CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCEEEEEeCCC------CEEEEEECCCCcEEEE--EEcCC--CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 667777766543 3 67789887653321 11000 0000111222 35777778877789999998654
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=35.78 E-value=2.6e+02 Score=25.65 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=50.3
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCC--CcCCCCCEEEEE-----CCEEEEEecC----------
Q 016416 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVN--RAAQAPPLVAVV-----DNQLYAVEYL---------- 296 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~-----~g~l~v~gg~---------- 296 (390)
+|+|||.--. -..|++++..+.+...+..++.... ........+++. ++.||+....
T Consensus 37 dG~l~V~e~~------gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~ 110 (454)
T 1cru_A 37 DNQIWLTERA------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKEL 110 (454)
T ss_dssp TSCEEEEETT------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCS
T ss_pred CCcEEEEEcC------CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccc
Confidence 5667765211 1246666665555554433332110 001112245666 7899998532
Q ss_pred --CCeEEEEeCCCC--c---eEEcc-CCCccccCCCcceeEEEE-eCCEEEEEcCCC
Q 016416 297 --TNMVKKYDKLKN--T---WDVLG-RLPVRADLSNGWGLAFKA-CGNELLVVGGQR 344 (390)
Q Consensus 297 --~~~v~~yd~~~~--~---W~~v~-~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~ 344 (390)
...|.+|+...+ + .+.+- .+|... . +.+..++. -+|+|||.-|..
T Consensus 111 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-~--H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 111 PNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK-D--HQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEEEEECCCS-S--CCEEEEEECTTSCEEEEECCT
T ss_pred ccccEEEEEEECCCCCCcCCcEEEEEcCCCCC-C--CCCCeEeECCCCeEEEEECCC
Confidence 347888875432 2 23332 344321 1 23344433 378999987653
No 328
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=35.58 E-value=1.8e+02 Score=23.75 Aligned_cols=141 Identities=18% Similarity=0.172 Sum_probs=70.6
Q ss_pred eCCEEEEEeccCCCCCccceEEEEECCCCcE--EEc----CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeC
Q 016416 185 LGSIAIIAGGSDKNGHVLKSAELYDSTTGRW--EML----PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDL 258 (390)
Q Consensus 185 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W--~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 258 (390)
.++++|+|-|. ..|+++.....+ ..| +.+|.. .. ++...++++|++-| +.+++|+.
T Consensus 27 ~~g~~yfFkg~--------~~Wr~~~~~~~~~p~~Is~~wpgLP~~-ID-AA~~~~~~~yfFkG--------~~yw~~~~ 88 (219)
T 1hxn_A 27 NHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPST-VD-AAFSWEDKLYLIQD--------TKVYVFLT 88 (219)
T ss_dssp TTSCEEEEETT--------EEEESSSSSCTTCCEEGGGTCTTSCSS-CS-EEEEETTEEEEEET--------TEEEEEEC
T ss_pred CCCcEEEEeCC--------EEEEEcCCCCCCCceEhhhhccCCCCC-cc-EEEEECCcEEEecC--------CEEEEEeC
Confidence 47899999652 355555432211 111 123322 22 33345899999955 24778876
Q ss_pred CCCceEEccCCCCCCC---CcCC----CCCEEEE-E--CCEEEEEecCCCeEEEEeCCCC---ceEEccCCCccccCCCc
Q 016416 259 ETRKWRKIEGMYPNVN---RAAQ----APPLVAV-V--DNQLYAVEYLTNMVKKYDKLKN---TWDVLGRLPVRADLSNG 325 (390)
Q Consensus 259 ~~~~W~~~~~~~~~~~---~~~~----~~~~~~~-~--~g~l~v~gg~~~~v~~yd~~~~---~W~~v~~~~~~~~~~~~ 325 (390)
.++ .+..+..|.... ..+. ...-+|+ . ++++|++-| +..++||..+. .|...+.+|....
T Consensus 89 ~~~-~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG--~~ywr~d~~~~P~~i~~~~~g~p~~vd---- 161 (219)
T 1hxn_A 89 KGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG--RRLWWLDLKSGAQATWTELPWPHEKVD---- 161 (219)
T ss_dssp SSS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET--TEEEEEEGGGGGGCCCEEECCSCSCCS----
T ss_pred CCC-ceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC--CEEEEEeCCCCceEhhhcCCCCCCCcC----
Confidence 532 111111111000 0000 1122333 2 589999966 57899996542 3444333333222
Q ss_pred ceeEEEE-----------eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016416 326 WGLAFKA-----------CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 326 ~~~~~~~-----------~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+++.. .++.+|.+-|.. .+.|+..+
T Consensus 162 --Aa~~~~~~~~~~~~~~~~~~~YFFkg~~--------y~r~~~~~ 197 (219)
T 1hxn_A 162 --GALCMEKPLGPNSCSTSGPNLYLIHGPN--------LYCYRHVD 197 (219)
T ss_dssp --EEEEESSCSSSCCSCSSSCEEEEEETTE--------EEEESSHH
T ss_pred --EEEEccccccccceeccCCeEEEEECCE--------EEEEeCCc
Confidence 33331 356899998843 56676643
No 329
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=34.66 E-value=96 Score=27.33 Aligned_cols=118 Identities=11% Similarity=0.030 Sum_probs=58.5
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE--CCEEEEEecccC---CCccCceEEEEeCCCC
Q 016416 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM--DGKFYVIGGMSS---PTVSLTCGEEFDLETR 261 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~---~~~~~~~v~~yd~~~~ 261 (390)
..+|+.-..... .....+.+||..+++-.. .++.... +..+.. +..+|+...... .+.....+..||+.+.
T Consensus 16 ~~~yv~~~~~~~-~~d~~v~v~D~~t~~~~~--~i~~g~~-p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 16 NRIYVMDSVFMH-LTESRVHVYDYTNGKFLG--MVPTAFN-GHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GEEEEEECCGGG-GGGCEEEEEETTTCCEEE--EEECCEE-EEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CEEEEECCCCCc-cccCeEEEEECCCCeEEE--EecCCCC-CceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 467776432111 123578999998886532 2333322 223332 347888753211 1112356888999876
Q ss_pred ceE-EccCCCCCCCCcCCCCCEEEE-ECC-EEEEEecC-CCeEEEEeCCCCc
Q 016416 262 KWR-KIEGMYPNVNRAAQAPPLVAV-VDN-QLYAVEYL-TNMVKKYDKLKNT 309 (390)
Q Consensus 262 ~W~-~~~~~~~~~~~~~~~~~~~~~-~~g-~l~v~gg~-~~~v~~yd~~~~~ 309 (390)
+-. +++..+.. .........+++ -+| .||+.... .+.|.+||.++++
T Consensus 92 ~~~~~i~~~~~~-~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 92 TFEKEISLPPKR-VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD 142 (361)
T ss_dssp CEEEEEEECTTB-CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred cEEEEEEcCccc-cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence 532 23211110 000001112333 244 67776543 5789999988774
No 330
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=34.56 E-value=2.5e+02 Score=25.00 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=73.7
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEE-cCCCCC-CCcCce-EEEECCEEEEEecccC------CCccCceEEEE
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-LPSMHS-PRRLCS-GFFMDGKFYVIGGMSS------PTVSLTCGEEF 256 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~-~r~~~~-~~~~~~~iyv~GG~~~------~~~~~~~v~~y 256 (390)
++.+++-|+.+ ..+.++|+.+++... +..-.. ...-.. +..-+|++.+.+..+. .+.....+..+
T Consensus 192 ~~~~LaSgS~D------~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 192 MQEALLGTTIM------NNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp STTEEEEEETT------SEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred CCceEEEecCC------CcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 34566666543 458899999997533 321111 111111 2234788776655321 11234566778
Q ss_pred eCCCCceEEcc--CCCCCCCCcCCCCCEE-EEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe
Q 016416 257 DLETRKWRKIE--GMYPNVNRAAQAPPLV-AVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC 333 (390)
Q Consensus 257 d~~~~~W~~~~--~~~~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~ 333 (390)
|+.+.+-..+- .+|.. +....+ ....+.+.+-|...+.|.+||..+++-... +...... ........-
T Consensus 266 d~~tgk~l~v~~~~~p~G-----h~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t--L~gH~~~--vvs~vafSP 336 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPG-----QAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL--LPPVSDQ--HWSFVKWSG 336 (356)
T ss_dssp ETTTTEEEEEEEECCCTT-----CCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEE--ECCC--C--CCCEEEECS
T ss_pred ECCCCEEEEEEEeeccCC-----CcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEE--ecCCCCC--eEEEEEECC
Confidence 98877643321 11221 111111 112244555566677899999999875442 2111110 011111223
Q ss_pred CCEEEEEcCCCCCCCCeEEEeeecC
Q 016416 334 GNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 334 ~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
++++++.|+.++ .|.+||.
T Consensus 337 DG~~LaSGS~D~------TIklWd~ 355 (356)
T 2w18_A 337 TDSHLLAGQKDG------NIFVYHY 355 (356)
T ss_dssp SSSEEEEECTTS------CEEEEEE
T ss_pred CCCEEEEEECCC------cEEEecC
Confidence 677777777664 3777764
No 331
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=34.16 E-value=3.6e+02 Score=26.73 Aligned_cols=207 Identities=13% Similarity=0.084 Sum_probs=103.2
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCC-C-----CCCcccCCCCeeEEEe----CCEEEEEcccc----cCCeEEEEECC
Q 016416 98 HWVYLVCDPRGWEAFDPMKKKWMALPK-I-----PCDECFNHADKESLAV----GSELLVFGREL----FDFAIWKYSLV 163 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~-~-----p~~~~~~~~~~~~~~~----~~~iy~~Gg~~----~~~~~~~yd~~ 163 (390)
..+|+......++.-+-.-.+|..+.. + +...... .....++. .+.+|+..+.. ....+++=.-.
T Consensus 34 ~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~-~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~Dg 112 (763)
T 3a0f_A 34 DLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANL-LGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDR 112 (763)
T ss_dssp TCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCC-CSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESST
T ss_pred CEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccc-cceeEEEECCCCCCEEEEEecccccCCCCceEEEECCC
Confidence 556666545556666666778998765 3 2110011 11223333 36788765421 12344443344
Q ss_pred CCcEeecCCC-C-----CCCcc-eeeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCC---cCceE
Q 016416 164 FRSWMKCEGM-N-----HPRCL-FGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR---RLCSG 230 (390)
Q Consensus 164 t~~W~~~~~~-~-----~~r~~-~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r---~~~~~ 230 (390)
-.+|+.+... + ..+.. ..+++. .+.+|+.+. . ..+++=+=.-.+|+.+..++... .....
T Consensus 113 G~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~-~------~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~ 185 (763)
T 3a0f_A 113 GKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR-T------QGLWRSTDRAQTWSRMNQLPDSSTYGIGIIS 185 (763)
T ss_dssp TSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS-S------SCEEEESSTTSSCEECTTSCCCSCTTTCEEE
T ss_pred CCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC-C------CcEEEECCCCcCccccccCcccCCCccceEE
Confidence 5679887531 1 11211 123332 367777531 1 12332222244799987666432 22223
Q ss_pred EEE----CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCC---------------CCcCCCCCEEEEE-CCEE
Q 016416 231 FFM----DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNV---------------NRAAQAPPLVAVV-DNQL 290 (390)
Q Consensus 231 ~~~----~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~---------------~~~~~~~~~~~~~-~g~l 290 (390)
+.+ .+.||+.....+ .+++=+-.-.+|+.+...+... .........++.. ++.+
T Consensus 186 i~~~p~~~~~~~~~~~~~g------~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l 259 (763)
T 3a0f_A 186 VIFDPKNVGTAYVASHAVG------GLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRL 259 (763)
T ss_dssp EEECSSSTTCEEEEESSTT------CEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCE
T ss_pred EEECCCCCCEEEEEEeCCC------eEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcE
Confidence 333 246777643211 2333333345899987544211 0001111122222 6788
Q ss_pred EEEe--------cCCCeEEEEeCCCCceEEccCCCc
Q 016416 291 YAVE--------YLTNMVKKYDKLKNTWDVLGRLPV 318 (390)
Q Consensus 291 ~v~g--------g~~~~v~~yd~~~~~W~~v~~~~~ 318 (390)
|+.. +....+++.+-...+|+.+...+.
T Consensus 260 ~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~~~~ 295 (763)
T 3a0f_A 260 YITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSRE 295 (763)
T ss_dssp EEEEESSCSSSCCCCEEEEEEETTTTEEEECCTTSS
T ss_pred EEEeccCCCCCCCcceeEEEEeCCCCceEECCCCCC
Confidence 8883 344688999888899999876543
No 332
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=29.95 E-value=3.5e+02 Score=25.30 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=98.9
Q ss_pred ccEEEEEeC-CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe----------CCEEEEEcccc----cCCeEEEEE
Q 016416 97 EHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV----------GSELLVFGREL----FDFAIWKYS 161 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~----------~~~iy~~Gg~~----~~~~~~~yd 161 (390)
+..||+... ...+..+|+..+....+....... +. ....++. ++.||+..... ....+++++
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~-~~--~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~ 227 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP-TN--RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIK 227 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS-CS--BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEECCCCEEEEEEccCccc-cC--CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEe
Confidence 356777753 356788999988777654433211 11 1112322 34588775432 124577887
Q ss_pred CCC-CcEe------ecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECC-------CCc-EEEc------
Q 016416 162 LVF-RSWM------KCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDST-------TGR-WEML------ 218 (390)
Q Consensus 162 ~~t-~~W~------~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~-------t~~-W~~~------ 218 (390)
... +.|. .++... ..++++.. ++.||+.--. ...+.+||+. ++. |+..
T Consensus 228 r~~~G~~~~~~~~~~v~~~~---~p~giavdp~~g~LYvtd~~------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 228 RNADGTFDDRSDIQLIAAYK---QCNGATIHPINGELYFNSYE------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp CCTTSCCSTTSCEEEEEEES---CCCCEEECTTTCCEEEEETT------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCCCCceeecccceeeccCC---CceEEEEcCCCCeEEEEECC------CCEEEEEecccccccccCceeeccccccccc
Confidence 554 3452 233222 22334333 5788887432 2458999987 554 4321
Q ss_pred -----CCCCCCCcCceEEEE-CC-EEEEEecccCCCccCceEEE--EeCCCCce---EEccCCCC-C-----CC-CcCCC
Q 016416 219 -----PSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTVSLTCGEE--FDLETRKW---RKIEGMYP-N-----VN-RAAQA 279 (390)
Q Consensus 219 -----~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~--yd~~~~~W---~~~~~~~~-~-----~~-~~~~~ 279 (390)
...+........+.. +| .||+.= ...+.|.+ +|..+... +.++..+. . .. .+.-.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD------~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGV------INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEE------TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEe------CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 112211111233332 44 488872 12356677 45454433 22221100 0 00 01112
Q ss_pred CCE-EEEE---------CCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016416 280 PPL-VAVV---------DNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 280 ~~~-~~~~---------~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
.+. .+.+ +|.||+.+.....|.++|+. +.-+.++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~v~Tia 416 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GIVSTYA 416 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CBEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-CCEEEEe
Confidence 233 3333 47899999888899999964 4544443
No 333
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=28.11 E-value=2.6e+02 Score=25.29 Aligned_cols=131 Identities=8% Similarity=-0.117 Sum_probs=0.0
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEc
Q 016416 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
++.+++.|+.++. +..||+.+..-........ .........-+|+.++.|+..+.|.+||+....-..+
T Consensus 161 ~~~~las~s~Dg~------v~iwD~~~~~~~~~~~~~~-----~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~ 229 (434)
T 2oit_A 161 VPSMVAVCLADGS------IAVLQVTETVKVCATLPST-----VAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVI 229 (434)
T ss_dssp CTTEEEEEETTSC------EEEEEESSSEEEEEEECGG-----GCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEE
T ss_pred CCCEEEEEECCCe------EEEEEcCCCcceeeccCCC-----CceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccc
Q ss_pred cCCCccccCCCcceeEEEEeCCEEEE--EcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016416 314 GRLPVRADLSNGWGLAFKACGNELLV--VGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~lyv--~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
.........+.....++.-..+..|+ ....++.-....++.+|+...........|.....+
T Consensus 230 ~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~ 293 (434)
T 2oit_A 230 PCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEP 293 (434)
T ss_dssp CCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCS
T ss_pred cCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccC
No 334
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=27.88 E-value=3.2e+02 Score=24.25 Aligned_cols=60 Identities=12% Similarity=-0.047 Sum_probs=36.1
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEE-----cc-CCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCC
Q 016416 287 DNQLYAVEYLTNMVKKYDKLKNTWDV-----LG-RLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~W~~-----v~-~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
++++|++-| +..++||..+++-.. |. ..|.... .. -+++.. ++++|.|-|. ..+.||..
T Consensus 284 ~~~~yfFkG--~~yw~yd~~~~~v~~gyPk~I~~~f~g~p~---~i-DaA~~~~~g~~YfFkg~--------~ywr~d~~ 349 (365)
T 3ba0_A 284 FYRTYFFVD--NQYWRYDERRQMMDPGYPKLITKNFQGIGP---KI-DAVFYSKNKYYYFFQGS--------NQFEYDFL 349 (365)
T ss_dssp TTEEEEEET--TEEEEEETTTTEECSSCCCCHHHHSTTCCS---SC-SEEEEETTTEEEEEETT--------EEEEEETT
T ss_pred CCEEEEEEC--CEEEEEeCCcceecCCCCcchhhcCCCCCC---cc-ceeeEecCCcEEEEeCC--------EEEEEECC
Confidence 479999966 689999987654221 10 0111111 11 233344 8999999884 37788886
Q ss_pred C
Q 016416 360 S 360 (390)
Q Consensus 360 ~ 360 (390)
+
T Consensus 350 ~ 350 (365)
T 3ba0_A 350 L 350 (365)
T ss_dssp T
T ss_pred c
Confidence 6
No 335
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=27.04 E-value=2.8e+02 Score=23.21 Aligned_cols=194 Identities=10% Similarity=0.061 Sum_probs=97.0
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeC-CEEEEEeccCCCCCccceEEEEECCCCc--EE--
Q 016416 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLG-SIAIIAGGSDKNGHVLKSAELYDSTTGR--WE-- 216 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~-- 216 (390)
++.+|++... ...++.+|+.-.-++.++. ......-+++..+ +.+++.--. ...+.+|+..... |.
T Consensus 38 ~~~L~aV~d~--~~~I~~ld~~g~v~~~i~l-~g~~D~EGIa~~~~g~~~vs~E~------~~~l~~~~v~~~~~i~~~~ 108 (255)
T 3qqz_A 38 SNTLFSTINK--PAAIVEMTTNGDLIRTIPL-DFVKDLETIEYIGDNQFVISDER------DYAIYVISLTPNSEVKILK 108 (255)
T ss_dssp TTEEEEEEET--TEEEEEEETTCCEEEEEEC-SSCSSEEEEEECSTTEEEEEETT------TTEEEEEEECTTCCEEEEE
T ss_pred CCEEEEEECC--CCeEEEEeCCCCEEEEEec-CCCCChHHeEEeCCCEEEEEECC------CCcEEEEEcCCCCeeeeee
Confidence 4788887654 5678999998666766643 2222333555444 454444211 2456777655443 42
Q ss_pred EcC-CC--CCCCcCceEEEE---CCEEEEEecccCCCccCceEEEEe--CCCCceEEccC--CCCCCCCcCCCCCEEEEE
Q 016416 217 MLP-SM--HSPRRLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFD--LETRKWRKIEG--MYPNVNRAAQAPPLVAVV 286 (390)
Q Consensus 217 ~~~-~~--~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd--~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~ 286 (390)
... ++ .....++.+.++ ++++|++...+ ...++.|+ +.+..-+.+.. +..... .+-..++++.
T Consensus 109 ~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-----p~~i~~~~g~~~~~~l~i~~~~~~~~~~~--~~d~S~l~~d 181 (255)
T 3qqz_A 109 KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-----PIEVYKVNGLLSSNELHISKDKALQRQFT--LDDVSGAEFN 181 (255)
T ss_dssp EEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-----SEEEEEEESTTCSSCCEEEECHHHHHTCC--SSCCCEEEEE
T ss_pred eeccccccccccCCcceEEEeCCCCEEEEEECcC-----CceEEEEcccccCCceeeecchhhccccc--cCCceeEEEc
Confidence 121 12 122344555555 45899975443 23577777 22221222111 000000 0111233332
Q ss_pred --CCEEEEEecCCCeEEEEeCCCCceEEccCCCccc-----cCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016416 287 --DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRA-----DLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 287 --~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~-----~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
.|++|++....+.+.++|...+.=..+ .+.... ....-.|.++ .-+|+|||++--+ -+|+|.++
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g~~~~~~-~L~~g~~~l~~~~~qpEGia~-d~~G~lyIvsE~n-------~~y~f~~~ 252 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVGEVIGEM-SLTKGSRGLSHNIKQAEGVAM-DASGNIYIVSEPN-------RFYRFTPQ 252 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCCEEEEE-ECSTTGGGCSSCCCSEEEEEE-CTTCCEEEEETTT-------EEEEEEC-
T ss_pred CCCCeEEEEECCCCeEEEEcCCCCEEEEE-EcCCccCCcccccCCCCeeEE-CCCCCEEEEcCCc-------eEEEEEec
Confidence 478999999999999999876622221 222110 0011123332 3367899996432 47777654
Q ss_pred C
Q 016416 360 S 360 (390)
Q Consensus 360 ~ 360 (390)
.
T Consensus 253 ~ 253 (255)
T 3qqz_A 253 S 253 (255)
T ss_dssp -
T ss_pred C
Confidence 3
No 336
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=26.13 E-value=3.3e+02 Score=23.81 Aligned_cols=115 Identities=11% Similarity=0.009 Sum_probs=57.7
Q ss_pred ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-----CCEEEEEecC---C----CeE
Q 016416 233 MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-----DNQLYAVEYL---T----NMV 300 (390)
Q Consensus 233 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-----~g~l~v~gg~---~----~~v 300 (390)
-+|+|||.-- ...|.++|. +.+ +.+..++.. .........+++. ++.||+.... . +.|
T Consensus 38 pdG~l~V~e~-------~g~I~~~d~-~G~-~~~~~~~v~-~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 38 GGGRYLVTER-------PGRLVLISP-SGK-KLVASFDVA-NVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp ETTEEEEEET-------TTEEEEECS-SCE-EEEEECCCC-CSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEeC-------CCEEEEEeC-CCc-eEeecccee-ecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3788888732 145777774 444 554433310 0001112234444 3689997532 2 678
Q ss_pred EEEeCCCC--c---eEEc-cCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCC-------CCeEEEeeecCCC
Q 016416 301 KKYDKLKN--T---WDVL-GRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPE-------GENVVLNSWCPKS 360 (390)
Q Consensus 301 ~~yd~~~~--~---W~~v-~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~-------~~~~~i~~y~~~~ 360 (390)
.+|+...+ . .+.+ ..+|... .+ .+..++ .-+|+||+.-|..++. .....|+.++++.
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~-~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAY-IH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCS-SC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCC-Cc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 99987665 2 3332 2233211 11 112222 2378999987643221 1123577787754
No 337
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=24.16 E-value=4.2e+02 Score=24.28 Aligned_cols=124 Identities=19% Similarity=0.296 Sum_probs=69.8
Q ss_pred CCCcEEE--cCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCC-----CCce-EEccCCCCCCCCcCCCCCE
Q 016416 211 TTGRWEM--LPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLE-----TRKW-RKIEGMYPNVNRAAQAPPL 282 (390)
Q Consensus 211 ~t~~W~~--~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-----~~~W-~~~~~~~~~~~~~~~~~~~ 282 (390)
....|+. ++-.|....-|+.+.+++.=|.+|=+++...+..--..|=+. ...= ++++.--. . ..+-++
T Consensus 268 ~~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~-~---~AsEPC 343 (670)
T 3ju4_A 268 HKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYE-P---DASEPC 343 (670)
T ss_dssp TTSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGC-T---TEEEEE
T ss_pred ccCCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhc-c---ccccch
Confidence 4455754 444554455678888888888888666543222222222111 1111 12221111 1 113356
Q ss_pred EEEECCEEEEEec-----C-CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcC
Q 016416 283 VAVVDNQLYAVEY-----L-TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 283 ~~~~~g~l~v~gg-----~-~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 342 (390)
+-..+|.||+.-- . ...+.+=+.....|+.+.- |..... ....++..++.||+||-
T Consensus 344 vkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrf-p~nvHh---tnlPFakvgD~l~mFgs 405 (670)
T 3ju4_A 344 IKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRF-PHNVHH---TTLPFAKVGDDLIMFGS 405 (670)
T ss_dssp EEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEEC-TTCCCS---SCCCEEEETTEEEEEEE
T ss_pred hhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheec-cccccc---cCCCcceeCCEEEEEec
Confidence 7789999999942 2 2456666777778998753 333222 12456678999999994
No 338
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=21.37 E-value=5e+02 Score=24.20 Aligned_cols=107 Identities=10% Similarity=0.010 Sum_probs=62.1
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCc-CceEEEE---------CC-EEEEEecccCCCccCceEE
Q 016416 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRR-LCSGFFM---------DG-KFYVIGGMSSPTVSLTCGE 254 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~-~~~~~~~---------~~-~iyv~GG~~~~~~~~~~v~ 254 (390)
++.||++-.. ...+.+.|+.++.-+.+........ .+....+ ++ .||+.--..+.......++
T Consensus 151 ~~~Lyv~~~~------~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~ 224 (496)
T 3kya_A 151 KDHLYICYDG------HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVY 224 (496)
T ss_dssp EEEEEEEEET------EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEE
T ss_pred CCEEEEEECC------CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEE
Confidence 3678888542 2458999999998887654433211 2333333 44 5888743221101234577
Q ss_pred EEeCCC-CceE------EccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCC
Q 016416 255 EFDLET-RKWR------KIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKL 306 (390)
Q Consensus 255 ~yd~~~-~~W~------~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~ 306 (390)
.++... ..|. .++... ....+++. ++.||+.....+.|++||++
T Consensus 225 ~i~r~~~G~~~~~~~~~~v~~~~--------~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 225 IIKRNADGTFDDRSDIQLIAAYK--------QCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEECCTTSCCSTTSCEEEEEEES--------CCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred EEecCCCCceeecccceeeccCC--------CceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 787554 3552 333111 11234443 57899998878899999997
No 339
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=20.27 E-value=4.7e+02 Score=23.42 Aligned_cols=108 Identities=13% Similarity=-0.054 Sum_probs=57.6
Q ss_pred ccEEEEEeC-----CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccc-------cCCeEEEEECC
Q 016416 97 EHWVYLVCD-----PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGREL-------FDFAIWKYSLV 163 (390)
Q Consensus 97 ~~~l~~~~~-----~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~-------~~~~~~~yd~~ 163 (390)
..++|+... ...+..+|+.+.+-. ..++..... ...+.. +..+|+..... ..+.+.++|+.
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--~~I~vG~~P----~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMIDGGFLP----NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEEECSSC----EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEE--EEEECCCCC----cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 466777743 356788998876532 222221111 112222 45678765321 23568999999
Q ss_pred CCcEee-cCCCCCCC-----cceeee--eeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016416 164 FRSWMK-CEGMNHPR-----CLFGSG--SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 164 t~~W~~-~~~~~~~r-----~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
+++-.. ++..+..| ..+..+ .-+..+|+.... ..+.+.+.|..+++=
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLEGKAF 172 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECCCCcE
Confidence 987532 22111011 112222 235678887421 135688999998864
No 340
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.01 E-value=50 Score=21.56 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=16.2
Q ss_pred CCCChHHHHHHHhhhcccc
Q 016416 47 LPGLVDDVALNCLAFACTS 65 (390)
Q Consensus 47 ~~~LP~dl~~~iL~rlp~~ 65 (390)
+|.+|++++.+|+..---.
T Consensus 21 FPEvPd~VVsqc~~qN~~N 39 (75)
T 2dae_A 21 FPEVPEVVVSRCMLQNNNN 39 (75)
T ss_dssp SSSSCHHHHHHHHTTTTSC
T ss_pred cccCcHHHHHHHHHHhccC
Confidence 8999999999999876544
Done!