BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016417
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZQ6|A Chain A, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|B Chain B, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|C Chain C, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|D Chain D, Adp-Alf4 Complex Of M. Therm. Trc40
Length = 324
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 149/307 (48%), Gaps = 42/307 (13%)
Query: 106 AASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165
+A+ A+ A +G TLV+STDPAHSLSDS +++ E L+A+EI+PE A
Sbjct: 31 SAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKITEN----LYAVEIDPEVAM 86
Query: 166 EEFRNVTQKDGGTGVKDFMDGMGLGMXXXXXXXXXXXXXXDTPPPGLDEAIAISK----- 220
EE++ Q+ GMGL M PG+DEA A +
Sbjct: 87 EEYQAKLQEQAAMN-----PGMGLDMLQDQMDMASMS-------PGIDEAAAFDQFLRYM 134
Query: 221 ---------------GHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVF---GQEQ 262
GHTLRLLS P+ +D+ +GK++K+R +I S A K++ G E+
Sbjct: 135 TTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEE 194
Query: 263 NRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXXXXXXXXXXXXXNVPVK 322
A +E ++++ RE+ D + T F +V IP M++ ++
Sbjct: 195 EEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSIHAD 254
Query: 323 RLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALR 382
+IVNQ++ P SDC+FC +RK Q L+ I+ + S ++ E PL+ E +G+ L
Sbjct: 255 GVIVNQVL-PEESDCEFCNARRKLQQERLKQIR--EKFSDKVVAEVPLLKKEAKGIETLE 311
Query: 383 FMGDIIW 389
+ + ++
Sbjct: 312 KIAEQLY 318
>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
Length = 349
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 164/331 (49%), Gaps = 55/331 (16%)
Query: 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEG 149
KY M GGKGGVGKT+ +A+ V A G ++VSTDPAHSL D F Q+ G + V+G
Sbjct: 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEF-GHEPTKVKG 85
Query: 150 PDFPLFALEINPEKAREEFRNVTQKD------GGTGVKDFMDGMGLGMXXXXXXXXXXXX 203
D L+ +EI+P+KA EE++ + G ++D ++ L
Sbjct: 86 YD-NLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALS------------- 131
Query: 204 XXDTPPPGLDEAIAIS--------------------KGHTLRLLSLPDFLDASIGKILKL 243
PG DE+ A GHTLR L +P+ +D + K++KL
Sbjct: 132 ------PGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKL 185
Query: 244 REKIASATSAIKSV--FG---QEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTI 298
R++++ +K + FG ++ + ++LE+++ER+V+ R + D + T F +V I
Sbjct: 186 RKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVI 245
Query: 299 PTVMAVXXXXXXXXXXXXXNVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDS 358
P M++ +P+ +IVNQ+IP C FC +R+ Q++ LEMIK
Sbjct: 246 PEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQ-CDFCRARRELQLKRLEMIK--E 302
Query: 359 ELSSLMLIEAPLVDVEIRGVPALRFMGDIIW 389
+ ++ PL+ E +G+ L+ + I++
Sbjct: 303 KFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
>pdb|3IQW|A Chain A, Amppnp Complex Of C. Therm. Get3
pdb|3IQW|B Chain B, Amppnp Complex Of C. Therm. Get3
pdb|3IQX|A Chain A, Adp Complex Of C.Therm. Get3 In Closed Form
pdb|3IQX|B Chain B, Adp Complex Of C.Therm. Get3 In Closed Form
Length = 334
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 144/311 (46%), Gaps = 47/311 (15%)
Query: 106 AASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165
+ SLA++ A L++STDPAH+LSD+F+Q G + VEG D L+A+EI+P +
Sbjct: 33 SCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKF-GKEARLVEGFD-NLYAMEIDPNGSM 90
Query: 166 EEFRNVTQKDGGTGVKDFMDGMGLGMXXXXXXXXXXXXXXDTPPPGLDEAIAISK----- 220
++ DG G M G+G+ PG+DEA++ ++
Sbjct: 91 QDLLAGQTGDGDAG----MGGVGVMQDLAYAI------------PGIDEAMSFAEVLKQV 134
Query: 221 ---------------GHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQ 265
GHTLR L P L+ ++ K+ +L + S + I G N Q
Sbjct: 135 NSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQ 194
Query: 266 GASDKLERLRERMVKVREL---FRDTDSTEFVIVTIPTVMAVXXXXXXXXXXXXXNVPVK 322
SD +E+L V + E+ F+D T FV V IP +++ +
Sbjct: 195 TLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANYGIDTH 254
Query: 323 RLIVNQII-PPSASDCKFCAMKRKDQMRALEMIKS--DSELSSLMLIEAPLVDVEIRGVP 379
++VNQ++ P SDC+ C +R+ Q + L+ I+ D E + +++ PL+ E+RG
Sbjct: 255 CIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFN---VVKMPLLVEEVRGKE 311
Query: 380 ALRFMGDIIWK 390
L +++ K
Sbjct: 312 RLEKFSEMLIK 322
>pdb|2WOO|A Chain A, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|B Chain B, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|C Chain C, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|D Chain D, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|E Chain E, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|F Chain F, Nucleotide-Free Form Of S. Pombe Get3
Length = 329
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 134/306 (43%), Gaps = 43/306 (14%)
Query: 106 AASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165
+ SLA++ + L++STDPAH+LSD+F G V G D L A+EI+P +
Sbjct: 36 SCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKF-GKDARKVPGFD-NLSAMEIDPNLSI 93
Query: 166 EEF-RNVTQKDGGTGVKDFMDGMGLGMXXXXXXXXXXXXXXDTPPPGLDEAIAISK---- 220
+E Q++ + M + + PG+DEA+A ++
Sbjct: 94 QEMTEQADQQNPNNPLSGMMQDLAFTI------------------PGIDEALAFAEILKQ 135
Query: 221 ----------------GHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNR 264
GHTLR L+ P L+ ++GK+ L + + + S+ G N
Sbjct: 136 IKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGVNANE 195
Query: 265 QGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXXXXXXXXXXXXXNVPVKRL 324
Q K+E +R + +V + F++ D T FV V I +++ + +
Sbjct: 196 QDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDTHNI 255
Query: 325 IVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFM 384
+VNQ++ + C C +RK Q + L I+ E +++ P V E+RG AL+
Sbjct: 256 VVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYE--DFHVVKVPQVPAEVRGTEALKSF 313
Query: 385 GDIIWK 390
+++ K
Sbjct: 314 SEMLVK 319
>pdb|3IBG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|E Chain E, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|F Chain F, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
Length = 348
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 41/296 (13%)
Query: 106 AASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165
+ SLA++ A L++STDPAH+LSD+F Q G + V+G L A+EI+P +
Sbjct: 43 SCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKF-GKEARLVDGYS-NLSAMEIDPNGSI 100
Query: 166 EEFRNVTQKDGGTGVKDFMDGMGLGMXXXXXXXXXXXXXXDTPPPGLDEAIAISK----- 220
++ G + D + G+G+G PG+DEA++ ++
Sbjct: 101 QDLL----ASGDSQGDDPLAGLGMGNMMQDLAFSI---------PGVDEAMSFAEVLKQV 147
Query: 221 ---------------GHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFG---QEQ 262
GHTLR L P L+ ++ K+ +L + ++I G Q
Sbjct: 148 KSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPMLNSILGARGGLPGGQ 207
Query: 263 NRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXXXXXXXXXXXXXNVPVK 322
N K+E LRE + +V F++ D T FV V I +++ +
Sbjct: 208 NIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETERMIQELTSYGIDTH 267
Query: 323 RLIVNQII-PPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRG 377
++VNQ++ P S C+ C +RK Q + LE I+ E ++ PL+ E+RG
Sbjct: 268 AIVVNQLLFPKEGSGCEQCNARRKMQKKYLEQIEELYE--DFNVVRMPLLVEEVRG 321
>pdb|3IO3|A Chain A, Get3 With Adp From D. Hansenii In Closed Form
Length = 348
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 134/318 (42%), Gaps = 68/318 (21%)
Query: 103 TSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEG-PDFPLFALEINP 161
+S A LA+ A L++STDPAH+LSD+F Q G VEG P+ L +EI+P
Sbjct: 36 SSVAVQLAL--AQPNEQFLLISTDPAHNLSDAFCQKF-GKDARKVEGLPN--LSCMEIDP 90
Query: 162 EKAREEFRNVTQK---DGGTGVKDFMDGMGLGMXXXXXXXXXXXXXXDTPPPGLDEAI-- 216
E A + + + D +K M M + PG+DEA+
Sbjct: 91 EAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSI------------------PGIDEALSF 132
Query: 217 --------------------AIS----------KGHTLRLLSLPDFLDASIGKILKLREK 246
AIS GHTLR L LP L+ + K L K
Sbjct: 133 MEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSKFKDLSGK 192
Query: 247 IASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXX 306
+ S + GQ+Q+ +KL +++ + +V E F + + T F+ V I +++
Sbjct: 193 LGPMLSMMGG--GQQQD---IFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYE 247
Query: 307 XXXXXXXXXXXNVPVKRLIVNQIIPPSASD--CKFCAMKRKDQMRALEMIKSDSELSSLM 364
N+ V ++VNQ++ D CK C + K Q + L+ + E
Sbjct: 248 TERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYE--DYH 305
Query: 365 LIEAPLVDVEIRGVPALR 382
L++ PL+ EIRGV L+
Sbjct: 306 LVKMPLLGCEIRGVENLK 323
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 61/317 (19%)
Query: 103 TSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPE 162
+SC+ ++ + + L++STDPAH+LSD+F + G V G + L +EI+P
Sbjct: 34 SSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMN-NLSCMEIDPS 91
Query: 163 KAREEFRNV----TQKDGGTGVKDFMDGMGLGMXXXXXXXXXXXXXXDTPPPGLDEAIAI 218
A ++ ++ +G G D + + G PG+DEA++
Sbjct: 92 AALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSI---------PGIDEALSF 142
Query: 219 SK--------------------------GHTLRLLSLPDFLDASIGKILKLREKIASATS 252
+ GHTLR L LP+ L KL EK T+
Sbjct: 143 MEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLS-------KLLEKFGEITN 195
Query: 253 AIKSVFGQEQNRQGA-----SDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXXX 307
+ + + GA S KL L+ + +R+ F D D T FV V I +++
Sbjct: 196 KLGPML---NSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252
Query: 308 XXXXXXXXXXNVPVKRLIVNQII---PPSASDCKFCAMKRKDQMRALEMIKSDSELSSLM 364
++ V +IVNQ++ +CK C + K Q + L+ I D
Sbjct: 253 ERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQI--DELYEDFH 310
Query: 365 LIEAPLVDVEIRGVPAL 381
+++ PL EIRG+ L
Sbjct: 311 VVKMPLCAGEIRGLNNL 327
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 61/317 (19%)
Query: 103 TSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPE 162
+SC+ ++ + + L++STDPAH+LSD+F + G V G + L +EI+P
Sbjct: 34 SSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMN-NLSCMEIDPS 91
Query: 163 KAREEFRNV----TQKDGGTGVKDFMDGMGLGMXXXXXXXXXXXXXXDTPPPGLDEAIAI 218
A ++ ++ +G G D + + G PG+DEA++
Sbjct: 92 AALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSI---------PGIDEALSF 142
Query: 219 SK--------------------------GHTLRLLSLPDFLDASIGKILKLREKIASATS 252
+ GHTLR L LP+ L KL EK T+
Sbjct: 143 MEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLS-------KLLEKFGEITN 195
Query: 253 AIKSVFGQEQNRQGA-----SDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXXX 307
+ + + GA S KL L+ + +R+ F D D T FV V I +++
Sbjct: 196 KLGPMLN---SFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252
Query: 308 XXXXXXXXXXNVPVKRLIVNQII---PPSASDCKFCAMKRKDQMRALEMIKSDSELSSLM 364
++ V +IVNQ++ +CK C + K Q + L+ I D
Sbjct: 253 ERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQI--DELYEDFH 310
Query: 365 LIEAPLVDVEIRGVPAL 381
+++ PL EIRG+ L
Sbjct: 311 VVKMPLCAGEIRGLNNL 327
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
Length = 354
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 61/317 (19%)
Query: 103 TSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPE 162
+SC+ ++ + + L++STDPAH+LSD+F + G V G + L +EI+P
Sbjct: 34 SSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMN-NLSCMEIDPS 91
Query: 163 KAREEFRNV----TQKDGGTGVKDFMDGMGLGMXXXXXXXXXXXXXXDTPPPGLDEAIAI 218
A ++ ++ +G G D + + G PG+DEA++
Sbjct: 92 AALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSI---------PGIDEALSF 142
Query: 219 SK--------------------------GHTLRLLSLPDFLDASIGKILKLREKIASATS 252
+ GHTLR L LP+ L KL EK T+
Sbjct: 143 MEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLS-------KLLEKFGEITN 195
Query: 253 AIKSVFGQEQNRQGA-----SDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXXX 307
+ + + GA S KL L+ + +R+ F D D T FV V I +++
Sbjct: 196 KLGPMLN---SFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252
Query: 308 XXXXXXXXXXNVPVKRLIVNQII---PPSASDCKFCAMKRKDQMRALEMIKSDSELSSLM 364
++ V +IVNQ++ +CK C + K Q + L+ I D
Sbjct: 253 ERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQI--DELYEDFH 310
Query: 365 LIEAPLVDVEIRGVPAL 381
+++ PL EIRG+ L
Sbjct: 311 VVKMPLCAGEIRGLNNL 327
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 61/317 (19%)
Query: 103 TSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPE 162
+SC+ ++ + + L++STDPAH+LSD+F + G V G + L +EI+P
Sbjct: 34 SSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMN-NLSCMEIDPS 91
Query: 163 KAREEFRNV----TQKDGGTGVKDFMDGMGLGMXXXXXXXXXXXXXXDTPPPGLDEAIAI 218
A ++ ++ +G G D + + G PG+DEA++
Sbjct: 92 AALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSI---------PGIDEALSF 142
Query: 219 SK--------------------------GHTLRLLSLPDFLDASIGKILKLREKIASATS 252
+ GHTLR L LP+ L KL EK T+
Sbjct: 143 MEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLS-------KLLEKFGEITN 195
Query: 253 AIKSVFGQEQNRQGA-----SDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXXX 307
+ + + GA S KL L+ + +R+ F D D T FV V I +++
Sbjct: 196 KLGPMLN---SFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252
Query: 308 XXXXXXXXXXNVPVKRLIVNQII---PPSASDCKFCAMKRKDQMRALEMIKSDSELSSLM 364
++ V +IVNQ++ +CK C + K Q + L+ I D
Sbjct: 253 ERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQI--DELYEDFH 310
Query: 365 LIEAPLVDVEIRGVPAL 381
+++ PL EIRG+ L
Sbjct: 311 VVKMPLCAGEIRGLNNL 327
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 127/312 (40%), Gaps = 51/312 (16%)
Query: 103 TSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPE 162
+SC+ ++ + + L++STDPAH+LSD+F + G V G + L +EI+P
Sbjct: 34 SSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMN-NLSCMEIDPS 91
Query: 163 KAREEFRNV----TQKDGGTGVKDFMDGMGLGMXXXXXXXXXXXXXXDTPPPGLDEAIAI 218
A ++ ++ +G G D + + G PG+DEA++
Sbjct: 92 AALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSI---------PGIDEALSF 142
Query: 219 SK--------------------------GHTLRLLSLPDFLDASIGKILKLREKIASATS 252
+ GHTLR L LP+ L + K ++ K+
Sbjct: 143 MEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLG---P 199
Query: 253 AIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXXXXXXXX 312
+ S G S KL L+ + +R+ F D D T FV V I +++
Sbjct: 200 MLNSFMG--AGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQ 257
Query: 313 XXXXXNVPVKRLIVNQII---PPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAP 369
++ V +IVNQ++ +CK C + K Q + L+ I D +++ P
Sbjct: 258 ELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQI--DELYEDFHVVKMP 315
Query: 370 LVDVEIRGVPAL 381
L EIRG+ L
Sbjct: 316 LCAGEIRGLNNL 327
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 116/296 (39%), Gaps = 68/296 (22%)
Query: 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL--TGGQLVPVE 148
Y GKGGVGKTS + + A++ A G L+VSTDPA ++ F+Q + T + V
Sbjct: 10 YLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVP 69
Query: 149 GPDFPLFALEINPEKAREEFR-----------------NVTQKDGG---TGVKDFMDGMG 188
G L ALEI+P+ A +++R ++ ++ G T + F + G
Sbjct: 70 G----LSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTG 125
Query: 189 LGMXXXXXXXXXXXXXXDTPPPGLDEAIAISKGHTLRLLSLPDFLDASIGKILKLREKIA 248
L + DT P GHT+RLL LP + I
Sbjct: 126 L-LTDASLLTRFDHIIFDTAP----------TGHTIRLLQLPGAWSSFI----------- 163
Query: 249 SATSAIKSVFGQEQNRQGAS-----DKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 303
+ N +GAS LE+ RE+ E D T V+V
Sbjct: 164 ------------DSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKST 211
Query: 304 VXXXXXXXXXXXXXNVPVKRLIVNQIIPPS--ASDCKFCAMKRKDQMRALEMIKSD 357
+ + + L++N ++P + A+D A+ ++Q AL + +D
Sbjct: 212 LQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQ-EALANLPAD 266
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 76 AVSGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF 135
++S + +A + ML GKGGVGKT+ AA++AV+ A+ G + ++DPA LS +
Sbjct: 314 SLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTL 373
Query: 136 AQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRN 170
L Q+ I+P + E +R
Sbjct: 374 NGSLNNLQVS------------RIDPHEETERYRQ 396
>pdb|3FWY|A Chain A, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
pdb|3FWY|B Chain B, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
Length = 314
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139
DE T K + + GKGG+GK++ +++L+ F+ G L + DP H + +
Sbjct: 39 LDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLT--- 95
Query: 140 TGGQLVPVEGPDFPLFALEINPEKAREE 167
G LVP L ++ +PE+ R E
Sbjct: 96 --GSLVPTVID--VLKDVDFHPEELRPE 119
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
R + GKGG GKT+ A+L V A GH +V D
Sbjct: 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDAD 40
>pdb|4DZZ|A Chain A, Structure Of Parf-Adp, Crystal Form 1
pdb|4DZZ|B Chain B, Structure Of Parf-Adp, Crystal Form 1
pdb|4E03|A Chain A, Structure Of Parf-Adp Form 2
pdb|4E03|B Chain B, Structure Of Parf-Adp Form 2
pdb|4E07|A Chain A, Parf-Amppcp-C2221 Form
pdb|4E07|B Chain B, Parf-Amppcp-C2221 Form
pdb|4E09|A Chain A, Structure Of Parf-Amppcp, I422 Form
Length = 206
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSD 133
L KGG GKT+ ++A + +G+ VV TDP SL++
Sbjct: 6 FLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN 46
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVV 123
GKGGVGKT+ +A++A A G T+V+
Sbjct: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVI 37
>pdb|2YNM|A Chain A, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
pdb|2YNM|B Chain B, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 301
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129
GKGG+GK++ +++L+ F+ G L + DP H
Sbjct: 41 GKGGIGKSTTSSNLSAAFSKLGKKVLQIGCDPKH 74
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
M+ R+ + KGGVGKT+ A +LA A G L+V DP
Sbjct: 1 MLRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVVSTD 126
G GK++ AA+LAV +A G+ TL+V D
Sbjct: 93 GAGKSTIAANLAVAYAQAGYKTLIVDGD 120
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
R ++ GKGG GKT+ A+L+V + G L V D
Sbjct: 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
GKGGVGK++ A LAV +A G ++ D
Sbjct: 26 GKGGVGKSTVTALLAVHYAKQGKKVGILDAD 56
>pdb|3PG5|A Chain A, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|B Chain B, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|C Chain C, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|D Chain D, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
Length = 361
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
KGGVGKT+ + ++A FA G L V DP
Sbjct: 6 FFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40
>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
pdb|3VX3|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
Length = 248
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134
+ G +R ++ GKGGVGK+ + +LA+ A G+ ++ D H SD
Sbjct: 15 LEGVKRIIPVVSGKGGVGKSLVSTTLALVLAEKGYRVGLLDLD-FHGASDH 64
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
GKGGVGK++ A LAV +A G ++ D
Sbjct: 26 GKGGVGKSTVTALLAVHYARQGKKVGILDAD 56
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
R ++ GKGG GKT+ A+L+V G L V D
Sbjct: 3 RIISIVSGKGGTGKTTVTANLSVALGEXGRKVLAVDGD 40
>pdb|1XDB|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp129glu
pdb|1XDB|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp129glu
Length = 289
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
GKGG+GK++ +L A G ++V DP
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40
>pdb|1G20|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
Length = 289
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
GKGG+GK++ +L A G ++V DP
Sbjct: 10 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 41
>pdb|1NIP|A Chain A, Crystallographic Structure Of The Nitrogenase Iron Protein
From Azotobacter Vinelandii
pdb|1NIP|B Chain B, Crystallographic Structure Of The Nitrogenase Iron Protein
From Azotobacter Vinelandii
pdb|1N2C|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|2NIP|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G1M|A Chain A, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G1M|B Chain B, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G5P|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G5P|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|B Chain B, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|C Chain C, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|D Chain D, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1M1Y|E Chain E, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|F Chain F, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|G Chain G, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|H Chain H, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|M Chain M, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|N Chain N, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|O Chain O, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|P Chain P, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|M Chain M, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|N Chain N, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|O Chain O, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|P Chain P, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|E Chain E, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|F Chain F, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|E Chain E, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|F Chain F, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|G Chain G, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|H Chain H, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|M Chain M, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|N Chain N, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|O Chain O, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|P Chain P, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|E Chain E, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|F Chain F, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|G Chain G, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|H Chain H, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 289
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
GKGG+GK++ +L A G ++V DP
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40
>pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
pdb|1DE0|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
pdb|1XCP|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|C Chain C, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|D Chain D, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
Length = 289
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
GKGG+GK++ +L A G ++V DP
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40
>pdb|2C8V|A Chain A, Insights Into The Role Of Nucleotide-Dependent
Conformational Change In Nitrogenase Catalysis:
Structural Characterization Of The Nitrogenase Fe
Protein Leu127 Deletion Variant With Bound Mgatp
Length = 288
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
GKGG+GK++ +L A G ++V DP
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40
>pdb|3KJE|A Chain A, Empty State Of Cooc1
pdb|3KJG|A Chain A, Adp-Bound State Of Cooc1
pdb|3KJG|B Chain B, Adp-Bound State Of Cooc1
pdb|3KJH|A Chain A, Zn-Bound State Of Cooc1
pdb|3KJI|A Chain A, Zn And Adp Bound State Of Cooc1
pdb|3KJI|B Chain B, Zn And Adp Bound State Of Cooc1
Length = 254
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136
GKGGVGKT+ AA L A++ V DP L +
Sbjct: 7 GKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLG 47
>pdb|1RW4|A Chain A, Nitrogenase Fe Protein L127 Deletion Variant
Length = 272
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
GKGG+GK++ +L A G ++V DP
Sbjct: 10 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 41
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125
+L G G VGKTS L V + NG+PT + T
Sbjct: 24 VLVGDGAVGKTS----LVVSYTTNGYPTEYIPT 52
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
+ML G G GKT+ A +A +A G+ L+ + D
Sbjct: 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142
>pdb|3CWQ|A Chain A, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
pdb|3CWQ|B Chain B, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
Length = 209
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130
KGGVGKT+ A L+ A G TL++ DP S
Sbjct: 9 KGGVGKTTTAVHLSAYLALQGE-TLLIDGDPNRS 41
>pdb|2VED|A Chain A, Crystal Structure Of The Chimerical Mutant Capabk55m
Protein
pdb|2VED|B Chain B, Crystal Structure Of The Chimerical Mutant Capabk55m
Protein
Length = 271
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVVSTD 126
G G ++ AA+LAV +A G+ TL+V D
Sbjct: 93 GAGMSTIAANLAVAYAQAGYKTLIVDGD 120
>pdb|2BEK|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|B Chain B, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|C Chain C, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|D Chain D, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
M+ R+ + KGGVGKT+ A +LA A G L+V P
Sbjct: 1 MLRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLAP 45
>pdb|1XD8|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD8|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD9|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
pdb|1XD9|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
Length = 289
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
GKGG+GK++ +L A G ++V +P
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCNP 40
>pdb|4E9L|A Chain A, Fdec, A Novel Broadly Conserved Escherichia Coli Adhesin
Eliciting Protection Against Urinary Tract Infections
Length = 420
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 101 GKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEIN 160
G+ S A S V A+N PT+ +T+ ++ D++ +TG + PD P+F+ +
Sbjct: 292 GEMSSANSTLV--ADNKTPTVKTTTELTFTMKDAYGNPVTGLK------PDAPVFSGAAS 343
Query: 161 PEKAREEFRNVTQKDGGTGVKDFMDGMGLG 190
R N T+K G V G G
Sbjct: 344 TGSERPSAGNWTEKGNGVYVSTLTLGSAAG 373
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 353 MIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGD-IIWK 390
++K+ ++++ L+ +EAP+ D I PA G+ ++W
Sbjct: 115 VVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVWH 153
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 353 MIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGD-IIWK 390
++K+ ++++ L+ +EAP+ D I PA G+ ++W
Sbjct: 115 VVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVWH 153
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 353 MIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGD-IIW 389
++K+ ++++ L+ +EAP+ D I PA G+ ++W
Sbjct: 115 VVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVW 152
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
P2
Length = 235
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 70 VAAPSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
V+ S + FD+++ G Q + L G+ G GKT + K +G P + V+T+
Sbjct: 2 VSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61
Query: 128 A 128
+
Sbjct: 62 S 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,979,869
Number of Sequences: 62578
Number of extensions: 373636
Number of successful extensions: 1271
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 54
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)