Query 016417
Match_columns 390
No_of_seqs 236 out of 2234
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:40:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2825 Putative arsenite-tran 100.0 1.7E-53 3.6E-58 390.7 25.2 293 79-390 9-323 (323)
2 PF02374 ArsA_ATPase: Anion-tr 100.0 3.8E-52 8.3E-57 405.6 25.2 284 90-390 2-305 (305)
3 COG0003 ArsA Predicted ATPase 100.0 5.4E-44 1.2E-48 348.2 27.0 281 89-390 2-304 (322)
4 cd00550 ArsA_ATPase Oxyanion-t 100.0 4.4E-37 9.6E-42 292.9 21.9 233 90-385 1-253 (254)
5 TIGR00345 arsA arsenite-activa 100.0 5E-36 1.1E-40 290.0 25.9 262 105-388 1-284 (284)
6 KOG3022 Predicted ATPase, nucl 99.9 1E-23 2.2E-28 197.4 13.2 183 76-341 35-229 (300)
7 cd02035 ArsA ArsA ATPase funct 99.9 1.3E-21 2.8E-26 182.2 16.2 83 283-367 134-216 (217)
8 cd02037 MRP-like MRP (Multiple 99.8 8.1E-19 1.7E-23 156.9 12.6 166 90-370 1-167 (169)
9 PRK11670 antiporter inner memb 99.8 4.5E-18 9.8E-23 170.3 14.9 55 84-138 103-158 (369)
10 COG0489 Mrp ATPases involved i 99.8 2.3E-18 4.9E-23 165.1 12.1 170 86-332 55-232 (265)
11 COG2894 MinD Septum formation 99.7 8.8E-18 1.9E-22 152.9 7.3 172 88-334 2-187 (272)
12 CHL00175 minD septum-site dete 99.7 1.1E-16 2.5E-21 154.4 12.5 53 86-138 13-66 (281)
13 COG3640 CooC CO dehydrogenase 99.7 3.5E-16 7.5E-21 144.2 10.5 190 92-332 3-198 (255)
14 TIGR03029 EpsG chain length de 99.7 1.4E-15 3.1E-20 146.1 15.0 53 86-138 101-154 (274)
15 COG0455 flhG Antiactivator of 99.7 1.7E-15 3.7E-20 144.6 15.0 161 88-333 2-180 (262)
16 TIGR01969 minD_arch cell divis 99.6 2.1E-15 4.6E-20 142.2 14.5 50 89-138 1-51 (251)
17 TIGR01007 eps_fam capsular exo 99.6 3.7E-15 8.1E-20 137.1 15.7 51 87-137 16-67 (204)
18 PHA02518 ParA-like protein; Pr 99.6 1.8E-15 4E-20 139.0 13.4 50 89-138 1-50 (211)
19 TIGR03371 cellulose_yhjQ cellu 99.6 8.5E-15 1.8E-19 137.9 14.7 51 89-139 2-52 (246)
20 cd02117 NifH_like This family 99.6 7.9E-15 1.7E-19 135.9 13.6 45 90-135 2-46 (212)
21 TIGR01968 minD_bact septum sit 99.6 7.7E-15 1.7E-19 139.1 13.7 50 89-138 2-52 (261)
22 TIGR03018 pepcterm_TyrKin exop 99.6 1.1E-14 2.5E-19 134.5 14.4 53 87-139 34-88 (207)
23 PRK13232 nifH nitrogenase redu 99.6 3.3E-15 7.2E-20 143.7 10.9 46 89-135 2-47 (273)
24 PRK13236 nitrogenase reductase 99.6 4.5E-15 9.7E-20 144.7 11.1 47 90-136 7-53 (296)
25 cd03110 Fer4_NifH_child This p 99.6 1E-14 2.2E-19 131.3 11.7 47 90-140 1-48 (179)
26 cd02036 MinD Bacterial cell di 99.6 2.4E-14 5.3E-19 127.8 14.0 49 90-138 1-50 (179)
27 cd02040 NifH NifH gene encodes 99.6 5.7E-15 1.2E-19 141.2 10.2 47 89-136 2-48 (270)
28 CHL00072 chlL photochlorophyll 99.6 6.3E-15 1.4E-19 143.2 10.0 45 92-136 3-47 (290)
29 TIGR01281 DPOR_bchL light-inde 99.6 4.3E-15 9.3E-20 142.3 8.6 46 90-136 2-47 (268)
30 PRK13233 nifH nitrogenase redu 99.6 7.3E-15 1.6E-19 141.3 10.0 48 89-137 3-52 (275)
31 PRK13235 nifH nitrogenase redu 99.6 4.7E-15 1E-19 142.7 8.4 47 89-136 2-48 (274)
32 PRK10818 cell division inhibit 99.6 5E-14 1.1E-18 135.0 14.1 52 88-139 2-54 (270)
33 TIGR01287 nifH nitrogenase iro 99.5 2.6E-14 5.7E-19 137.5 11.3 46 90-136 2-47 (275)
34 PRK13185 chlL protochlorophyll 99.5 3E-14 6.5E-19 136.6 11.6 48 89-137 3-50 (270)
35 cd02032 Bchl_like This family 99.5 6.2E-14 1.3E-18 134.3 11.8 47 90-137 2-48 (267)
36 PRK10037 cell division protein 99.5 1E-13 2.2E-18 131.8 11.9 50 89-138 2-51 (250)
37 TIGR01005 eps_transp_fam exopo 99.5 1.8E-13 3.8E-18 149.3 14.3 53 87-139 545-598 (754)
38 PRK13869 plasmid-partitioning 99.5 5.6E-13 1.2E-17 135.3 16.2 51 88-138 121-171 (405)
39 PRK13230 nitrogenase reductase 99.5 1.4E-13 3E-18 132.9 10.8 48 89-137 2-49 (279)
40 PRK13231 nitrogenase reductase 99.5 7.2E-14 1.6E-18 133.6 7.7 47 88-136 2-48 (264)
41 PRK13849 putative crown gall t 99.5 6.6E-13 1.4E-17 125.0 14.1 50 89-138 2-51 (231)
42 TIGR03815 CpaE_hom_Actino heli 99.5 5.6E-13 1.2E-17 131.3 14.0 53 87-139 92-145 (322)
43 PRK13234 nifH nitrogenase redu 99.5 2.7E-13 5.9E-18 132.1 11.6 48 88-136 4-51 (295)
44 PF01656 CbiA: CobQ/CobB/MinD/ 99.5 2.7E-13 5.8E-18 122.6 10.7 46 91-136 1-46 (195)
45 TIGR03453 partition_RepA plasm 99.5 1.4E-12 3.1E-17 131.7 16.9 52 87-138 103-154 (387)
46 PRK11519 tyrosine kinase; Prov 99.5 7.1E-13 1.5E-17 143.7 15.6 165 87-332 525-701 (719)
47 cd02033 BchX Chlorophyllide re 99.5 1.7E-13 3.7E-18 134.9 9.5 50 88-138 31-81 (329)
48 TIGR02016 BchX chlorophyllide 99.4 9.1E-13 2E-17 128.4 13.6 46 89-135 1-46 (296)
49 cd03111 CpaE_like This protein 99.4 1E-12 2.2E-17 108.8 11.8 41 90-130 1-42 (106)
50 PRK09841 cryptic autophosphory 99.4 1.7E-12 3.7E-17 140.9 15.8 167 86-333 529-707 (726)
51 COG1192 Soj ATPases involved i 99.4 2.1E-12 4.5E-17 123.0 13.6 53 88-140 2-55 (259)
52 COG1149 MinD superfamily P-loo 99.4 4.7E-13 1E-17 126.0 6.2 51 89-140 2-53 (284)
53 PHA02519 plasmid partition pro 99.4 1E-11 2.3E-16 125.2 15.7 51 88-138 106-157 (387)
54 PRK13705 plasmid-partitioning 99.4 2.5E-11 5.4E-16 122.6 18.1 52 87-138 105-157 (388)
55 PF06564 YhjQ: YhjQ protein; 99.4 2.5E-12 5.4E-17 121.1 9.1 52 89-140 2-53 (243)
56 cd02038 FleN-like FleN is a me 99.3 1.8E-11 3.9E-16 106.2 11.8 40 90-129 1-40 (139)
57 PF07015 VirC1: VirC1 protein; 99.3 1.6E-10 3.6E-15 107.5 15.2 50 89-138 2-51 (231)
58 cd02042 ParA ParA and ParB of 99.2 1E-10 2.2E-15 95.8 10.9 39 90-128 1-39 (104)
59 PRK13886 conjugal transfer pro 99.1 2.1E-09 4.5E-14 101.4 16.7 47 88-134 2-49 (241)
60 PF00142 Fer4_NifH: 4Fe-4S iro 99.1 2.2E-11 4.7E-16 115.1 2.6 46 92-137 3-49 (273)
61 PF09140 MipZ: ATPase MipZ; I 99.1 7.9E-11 1.7E-15 110.3 4.7 50 89-138 1-51 (261)
62 PF10609 ParA: ParA/MinD ATPas 98.7 4.3E-09 9.3E-14 82.4 2.1 49 290-342 25-73 (81)
63 COG1348 NifH Nitrogenase subun 98.7 4.6E-08 9.9E-13 90.5 8.8 46 90-136 3-49 (278)
64 TIGR00064 ftsY signal recognit 98.7 4E-07 8.7E-12 87.8 14.6 40 90-129 73-112 (272)
65 cd02034 CooC The accessory pro 98.6 4E-08 8.7E-13 82.8 5.6 47 92-139 2-48 (116)
66 cd03114 ArgK-like The function 98.6 3.2E-07 6.9E-12 80.6 10.7 45 92-136 2-48 (148)
67 cd01983 Fer4_NifH The Fer4_Nif 98.6 2.9E-07 6.2E-12 72.8 9.2 33 92-124 2-34 (99)
68 COG4963 CpaE Flp pilus assembl 98.6 6.2E-07 1.3E-11 88.7 12.7 55 86-140 102-158 (366)
69 cd03115 SRP The signal recogni 98.6 1.6E-06 3.5E-11 77.4 14.3 39 91-129 2-40 (173)
70 PRK10867 signal recognition pa 98.5 1.9E-06 4.2E-11 88.1 13.8 44 88-131 99-143 (433)
71 TIGR00347 bioD dethiobiotin sy 98.5 9.1E-07 2E-11 78.5 9.6 36 292-327 131-166 (166)
72 PRK10416 signal recognition pa 98.4 8.3E-06 1.8E-10 80.4 16.5 42 89-130 114-155 (318)
73 PF13614 AAA_31: AAA domain; P 98.4 3.3E-07 7.1E-12 80.1 5.5 51 89-139 1-52 (157)
74 TIGR00959 ffh signal recogniti 98.4 3.8E-06 8.3E-11 85.8 13.5 43 88-130 98-141 (428)
75 TIGR01425 SRP54_euk signal rec 98.3 1E-05 2.2E-10 82.5 14.5 47 89-135 100-147 (429)
76 PRK00771 signal recognition pa 98.3 6.5E-06 1.4E-10 84.4 12.3 42 89-130 95-136 (437)
77 PRK13768 GTPase; Provisional 98.2 1.6E-06 3.5E-11 82.8 6.1 41 90-130 3-43 (253)
78 PRK06526 transposase; Provisio 98.2 1.3E-06 2.8E-11 83.5 4.0 86 26-125 49-134 (254)
79 cd03109 DTBS Dethiobiotin synt 98.2 3E-05 6.4E-10 66.8 12.0 41 292-332 70-110 (134)
80 PRK08181 transposase; Validate 98.2 2.4E-06 5.1E-11 82.3 5.2 87 26-125 56-142 (269)
81 PRK09183 transposase/IS protei 98.1 5.2E-06 1.1E-10 79.5 5.6 86 26-125 53-138 (259)
82 COG1484 DnaC DNA replication p 97.9 1.6E-05 3.5E-10 76.0 5.2 87 26-125 55-141 (254)
83 PF01695 IstB_IS21: IstB-like 97.9 9.9E-06 2.2E-10 73.3 3.5 83 29-125 1-83 (178)
84 PRK01077 cobyrinic acid a,c-di 97.9 0.00027 5.8E-09 73.1 14.3 41 89-129 4-44 (451)
85 PRK00090 bioD dithiobiotin syn 97.8 0.0011 2.3E-08 61.7 15.9 41 292-332 135-175 (222)
86 cd01394 radB RadB. The archaea 97.8 4.8E-05 1E-09 70.4 6.3 54 75-128 3-58 (218)
87 PRK12727 flagellar biosynthesi 97.8 0.0007 1.5E-08 70.7 15.3 41 90-130 351-393 (559)
88 TIGR03499 FlhF flagellar biosy 97.7 4.9E-05 1.1E-09 73.7 5.6 41 89-129 194-236 (282)
89 PRK11889 flhF flagellar biosyn 97.7 5.7E-05 1.2E-09 76.1 5.7 40 90-129 242-281 (436)
90 PRK05703 flhF flagellar biosyn 97.7 4.9E-05 1.1E-09 77.9 5.3 40 90-129 222-263 (424)
91 PRK12724 flagellar biosynthesi 97.7 5.2E-05 1.1E-09 77.0 5.2 45 89-133 223-268 (432)
92 PRK09361 radB DNA repair and r 97.6 0.0001 2.2E-09 68.7 6.5 54 73-126 5-60 (225)
93 PRK12726 flagellar biosynthesi 97.6 0.0001 2.2E-09 74.0 6.0 42 89-130 206-247 (407)
94 PF00448 SRP54: SRP54-type pro 97.5 0.00014 3E-09 66.9 5.6 40 90-129 2-41 (196)
95 PRK14974 cell division protein 97.5 0.00019 4.1E-09 71.3 5.8 42 88-129 139-180 (336)
96 COG0467 RAD55 RecA-superfamily 97.5 0.00026 5.6E-09 67.6 6.6 57 72-128 4-62 (260)
97 COG1797 CobB Cobyrinic acid a, 97.4 0.00077 1.7E-08 68.2 10.0 36 90-125 2-37 (451)
98 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.00028 6.1E-09 67.6 5.9 53 74-126 5-73 (259)
99 PRK12723 flagellar biosynthesi 97.4 0.00025 5.4E-09 71.8 5.6 41 89-129 174-218 (388)
100 COG0132 BioD Dethiobiotin synt 97.4 0.0079 1.7E-07 56.3 15.0 41 293-333 139-179 (223)
101 TIGR00750 lao LAO/AO transport 97.3 0.00037 8.1E-09 68.2 6.3 44 88-131 33-76 (300)
102 PF01583 APS_kinase: Adenylyls 97.3 0.00039 8.4E-09 61.6 5.2 37 90-126 3-39 (156)
103 COG0529 CysC Adenylylsulfate k 97.3 0.00041 8.8E-09 62.3 5.1 49 88-136 22-71 (197)
104 TIGR02237 recomb_radB DNA repa 97.3 0.00056 1.2E-08 62.8 6.2 40 88-127 11-50 (209)
105 PRK06067 flagellar accessory p 97.2 0.00052 1.1E-08 64.4 5.8 54 73-126 7-62 (234)
106 PF06745 KaiC: KaiC; InterPro 97.2 0.00043 9.3E-09 64.5 5.1 55 74-128 2-59 (226)
107 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0007 1.5E-08 63.8 6.2 54 74-127 4-59 (237)
108 PRK07667 uridine kinase; Provi 97.2 0.00071 1.5E-08 61.8 6.1 41 88-128 16-56 (193)
109 cd01122 GP4d_helicase GP4d_hel 97.1 0.00051 1.1E-08 65.7 4.9 54 74-127 14-69 (271)
110 PHA02542 41 41 helicase; Provi 97.1 0.00069 1.5E-08 70.4 6.0 65 71-135 170-237 (473)
111 PRK00889 adenylylsulfate kinas 97.1 0.0008 1.7E-08 60.1 5.6 39 90-128 5-43 (175)
112 PRK14493 putative bifunctional 97.1 0.00074 1.6E-08 65.3 5.7 38 91-129 3-40 (274)
113 cd01124 KaiC KaiC is a circadi 97.1 0.00071 1.5E-08 60.6 4.9 36 92-127 2-37 (187)
114 PRK05973 replicative DNA helic 97.1 0.00074 1.6E-08 63.9 5.1 39 88-126 63-101 (237)
115 PRK07952 DNA replication prote 97.1 0.0007 1.5E-08 64.4 4.8 36 90-125 100-135 (244)
116 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0013 2.8E-08 61.4 6.2 54 74-127 3-58 (229)
117 PRK06696 uridine kinase; Valid 97.0 0.0011 2.4E-08 61.8 5.6 43 87-129 20-62 (223)
118 PRK05632 phosphate acetyltrans 97.0 0.0026 5.6E-08 69.2 9.0 36 89-124 3-38 (684)
119 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0016 3.4E-08 60.7 6.4 51 77-127 2-54 (224)
120 PRK03846 adenylylsulfate kinas 97.0 0.0013 2.8E-08 60.2 5.6 43 87-129 22-64 (198)
121 cd01120 RecA-like_NTPases RecA 97.0 0.001 2.2E-08 57.3 4.6 38 92-129 2-39 (165)
122 cd00984 DnaB_C DnaB helicase C 96.9 0.0016 3.4E-08 61.1 6.0 40 88-127 12-52 (242)
123 PF03796 DnaB_C: DnaB-like hel 96.9 0.0014 3E-08 62.6 5.5 53 74-126 3-57 (259)
124 PRK04328 hypothetical protein; 96.9 0.0018 3.8E-08 61.7 6.1 55 73-127 5-61 (249)
125 TIGR02012 tigrfam_recA protein 96.9 0.0018 3.9E-08 63.9 6.2 55 72-126 35-92 (321)
126 PF13500 AAA_26: AAA domain; P 96.9 0.0034 7.3E-08 57.3 7.7 41 292-332 131-171 (199)
127 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0012 2.6E-08 62.6 4.4 37 91-127 1-37 (249)
128 TIGR02655 circ_KaiC circadian 96.8 0.0021 4.5E-08 67.1 6.3 57 70-126 242-300 (484)
129 cd00983 recA RecA is a bacter 96.8 0.0024 5.2E-08 63.1 6.2 55 72-126 35-92 (325)
130 cd02028 UMPK_like Uridine mono 96.8 0.0017 3.7E-08 58.7 4.7 39 91-129 1-39 (179)
131 PRK13505 formate--tetrahydrofo 96.8 0.002 4.3E-08 67.2 5.7 52 87-140 54-108 (557)
132 TIGR03600 phage_DnaB phage rep 96.8 0.0023 4.9E-08 65.5 6.1 57 71-127 175-233 (421)
133 cd01121 Sms Sms (bacterial rad 96.8 0.0027 5.8E-08 64.1 6.3 57 71-127 62-120 (372)
134 TIGR00416 sms DNA repair prote 96.7 0.0026 5.6E-08 65.9 6.3 56 71-126 74-131 (454)
135 cd02027 APSK Adenosine 5'-phos 96.7 0.0018 3.9E-08 56.7 4.4 37 92-128 2-38 (149)
136 PRK11823 DNA repair protein Ra 96.7 0.003 6.4E-08 65.3 6.7 56 72-127 61-118 (446)
137 PF13207 AAA_17: AAA domain; P 96.7 0.0017 3.8E-08 53.9 3.7 23 91-113 1-23 (121)
138 PRK08939 primosomal protein Dn 96.7 0.0013 2.9E-08 64.6 3.4 87 26-125 102-192 (306)
139 PRK09435 membrane ATPase/prote 96.7 0.0035 7.7E-08 62.2 6.4 44 88-131 55-98 (332)
140 PHA00729 NTP-binding motif con 96.7 0.0031 6.6E-08 59.2 5.5 25 90-114 18-42 (226)
141 cd00477 FTHFS Formyltetrahydro 96.7 0.0028 6.1E-08 65.4 5.7 52 87-140 37-91 (524)
142 PF13481 AAA_25: AAA domain; P 96.7 0.0022 4.7E-08 57.9 4.4 40 89-128 32-81 (193)
143 TIGR02655 circ_KaiC circadian 96.6 0.0035 7.6E-08 65.4 6.3 54 73-126 3-59 (484)
144 cd01393 recA_like RecA is a b 96.6 0.0032 6.9E-08 58.4 5.4 53 75-127 3-63 (226)
145 PF13245 AAA_19: Part of AAA d 96.6 0.0034 7.5E-08 48.7 4.6 37 89-125 10-50 (76)
146 COG0541 Ffh Signal recognition 96.6 0.0039 8.5E-08 63.2 5.8 42 88-129 99-140 (451)
147 TIGR00665 DnaB replicative DNA 96.5 0.0039 8.5E-08 64.0 6.1 57 72-128 177-235 (434)
148 PRK08506 replicative DNA helic 96.5 0.0037 8E-08 65.1 5.8 57 72-128 174-231 (472)
149 PRK09354 recA recombinase A; P 96.5 0.0046 1E-07 61.7 6.2 56 72-127 40-98 (349)
150 PRK14722 flhF flagellar biosyn 96.5 0.0036 7.7E-08 63.1 5.4 41 89-129 137-179 (374)
151 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0035 7.6E-08 58.5 5.1 54 75-128 3-64 (235)
152 PRK06762 hypothetical protein; 96.5 0.0033 7.1E-08 55.5 4.6 35 90-127 3-37 (166)
153 PRK05595 replicative DNA helic 96.5 0.004 8.7E-08 64.3 5.7 55 73-127 184-240 (444)
154 COG1703 ArgK Putative periplas 96.5 0.0052 1.1E-07 59.5 6.0 49 91-139 53-103 (323)
155 PRK12377 putative replication 96.5 0.0038 8.3E-08 59.5 5.0 36 90-125 102-137 (248)
156 PRK06995 flhF flagellar biosyn 96.5 0.0044 9.5E-08 64.4 5.7 40 90-129 257-298 (484)
157 PF03308 ArgK: ArgK protein; 96.4 0.0039 8.5E-08 59.4 4.8 50 89-138 29-80 (266)
158 TIGR00176 mobB molybdopterin-g 96.4 0.0042 9E-08 54.9 4.7 35 92-126 2-36 (155)
159 PRK05541 adenylylsulfate kinas 96.4 0.0048 1E-07 55.1 5.2 39 89-127 7-45 (176)
160 PRK08533 flagellar accessory p 96.4 0.0054 1.2E-07 57.7 5.7 49 79-127 12-62 (230)
161 PRK05748 replicative DNA helic 96.4 0.0043 9.3E-08 64.1 5.4 58 71-128 184-243 (448)
162 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.005 1.1E-07 57.0 5.4 48 79-126 28-75 (226)
163 PRK06749 replicative DNA helic 96.4 0.0047 1E-07 63.5 5.5 56 73-128 169-225 (428)
164 PRK09302 circadian clock prote 96.4 0.0059 1.3E-07 64.1 6.4 55 72-126 12-69 (509)
165 KOG0635 Adenosine 5'-phosphosu 96.4 0.0058 1.2E-07 53.6 5.1 49 88-136 30-79 (207)
166 PRK08006 replicative DNA helic 96.4 0.0051 1.1E-07 64.0 5.8 57 72-128 206-264 (471)
167 PRK08760 replicative DNA helic 96.4 0.0048 1E-07 64.3 5.5 57 72-128 211-269 (476)
168 PF03205 MobB: Molybdopterin g 96.4 0.0074 1.6E-07 52.4 5.7 36 92-127 3-39 (140)
169 smart00382 AAA ATPases associa 96.4 0.003 6.4E-08 52.1 3.1 39 91-129 4-42 (148)
170 COG4240 Predicted kinase [Gene 96.3 0.0066 1.4E-07 56.8 5.3 43 84-126 45-88 (300)
171 PRK06321 replicative DNA helic 96.3 0.006 1.3E-07 63.5 5.6 57 72-128 208-266 (472)
172 PRK08840 replicative DNA helic 96.3 0.0066 1.4E-07 63.1 5.9 57 72-128 199-257 (464)
173 TIGR00455 apsK adenylylsulfate 96.3 0.0078 1.7E-07 54.2 5.7 41 87-127 16-56 (184)
174 PRK06904 replicative DNA helic 96.3 0.0062 1.3E-07 63.4 5.6 58 71-128 202-261 (472)
175 PRK13506 formate--tetrahydrofo 96.3 0.0059 1.3E-07 63.6 5.4 52 87-140 53-107 (578)
176 PRK05480 uridine/cytidine kina 96.2 0.008 1.7E-07 55.3 5.7 40 88-129 5-44 (209)
177 PRK08084 DNA replication initi 96.2 0.0069 1.5E-07 57.1 5.3 49 79-127 35-83 (235)
178 PRK09165 replicative DNA helic 96.2 0.0064 1.4E-07 63.7 5.5 55 72-126 199-269 (497)
179 PRK08727 hypothetical protein; 96.1 0.0071 1.5E-07 56.9 4.8 37 90-126 42-78 (233)
180 COG4088 Predicted nucleotide k 96.1 0.0048 1E-07 56.9 3.4 38 90-127 2-39 (261)
181 PRK05642 DNA replication initi 96.1 0.0066 1.4E-07 57.2 4.5 37 90-126 46-82 (234)
182 PRK06835 DNA replication prote 96.1 0.006 1.3E-07 60.5 4.4 36 90-125 184-219 (329)
183 cd02019 NK Nucleoside/nucleoti 96.1 0.0095 2.1E-07 45.1 4.5 32 92-125 2-33 (69)
184 cd00009 AAA The AAA+ (ATPases 96.1 0.011 2.4E-07 49.2 5.5 39 88-126 18-56 (151)
185 COG1341 Predicted GTPase or GT 96.1 0.012 2.6E-07 59.2 6.3 38 91-128 75-112 (398)
186 PRK06731 flhF flagellar biosyn 96.0 0.01 2.3E-07 57.2 5.6 39 91-129 77-115 (270)
187 PF03029 ATP_bind_1: Conserved 96.0 0.0053 1.1E-07 58.1 3.4 40 95-134 2-42 (238)
188 PRK09302 circadian clock prote 96.0 0.012 2.6E-07 61.8 6.3 58 70-127 252-311 (509)
189 PRK07004 replicative DNA helic 96.0 0.0078 1.7E-07 62.5 4.9 57 72-128 195-253 (460)
190 PRK06893 DNA replication initi 96.0 0.0088 1.9E-07 56.1 4.8 38 89-126 39-76 (229)
191 KOG1532 GTPase XAB1, interacts 96.0 0.061 1.3E-06 51.7 10.3 47 88-134 18-65 (366)
192 cd02029 PRK_like Phosphoribulo 95.9 0.011 2.4E-07 56.8 5.2 41 92-132 2-42 (277)
193 TIGR02236 recomb_radA DNA repa 95.9 0.012 2.6E-07 57.7 5.5 55 73-127 77-139 (310)
194 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.013 2.9E-07 52.0 5.3 34 90-124 4-37 (159)
195 PF00485 PRK: Phosphoribulokin 95.9 0.0093 2E-07 54.3 4.4 39 91-129 1-43 (194)
196 PRK15453 phosphoribulokinase; 95.9 0.014 3.1E-07 56.5 5.7 44 88-131 4-47 (290)
197 PRK13896 cobyrinic acid a,c-di 95.9 0.11 2.3E-06 53.6 12.4 38 90-127 3-40 (433)
198 PRK08903 DnaA regulatory inact 95.9 0.013 2.8E-07 54.6 5.2 39 89-127 42-80 (227)
199 PRK04296 thymidine kinase; Pro 95.9 0.014 3E-07 53.2 5.3 35 90-124 3-37 (190)
200 PRK05439 pantothenate kinase; 95.8 0.016 3.4E-07 57.0 5.9 44 87-130 84-129 (311)
201 PRK05636 replicative DNA helic 95.8 0.012 2.6E-07 61.8 5.3 57 72-128 247-305 (505)
202 PRK08233 hypothetical protein; 95.8 0.008 1.7E-07 53.5 3.5 38 90-129 4-41 (182)
203 cd02025 PanK Pantothenate kina 95.8 0.012 2.7E-07 54.9 4.8 38 92-129 2-41 (220)
204 TIGR03575 selen_PSTK_euk L-ser 95.8 0.01 2.2E-07 59.1 4.3 37 91-127 1-38 (340)
205 PRK04301 radA DNA repair and r 95.8 0.015 3.3E-07 57.2 5.5 57 72-128 83-147 (317)
206 cd02023 UMPK Uridine monophosp 95.7 0.013 2.8E-07 53.4 4.5 37 91-129 1-37 (198)
207 COG1419 FlhF Flagellar GTP-bin 95.7 0.014 3E-07 59.0 4.9 41 89-129 203-245 (407)
208 PRK08116 hypothetical protein; 95.7 0.015 3.3E-07 56.0 5.1 37 89-125 114-150 (268)
209 PRK14723 flhF flagellar biosyn 95.7 0.014 3.1E-07 63.6 5.3 41 89-129 185-227 (767)
210 PLN03187 meiotic recombination 95.7 0.019 4.2E-07 57.3 5.8 58 70-127 105-170 (344)
211 cd03116 MobB Molybdenum is an 95.7 0.024 5.2E-07 50.3 5.9 39 90-128 2-40 (159)
212 cd01125 repA Hexameric Replica 95.7 0.015 3.4E-07 54.6 4.9 25 91-115 3-27 (239)
213 PRK06921 hypothetical protein; 95.7 0.015 3.3E-07 55.9 5.0 37 89-125 117-154 (266)
214 TIGR00708 cobA cob(I)alamin ad 95.7 0.02 4.4E-07 51.5 5.4 35 90-125 7-41 (173)
215 TIGR02238 recomb_DMC1 meiotic 95.6 0.017 3.7E-07 56.9 5.2 56 72-127 77-140 (313)
216 PRK00131 aroK shikimate kinase 95.6 0.013 2.8E-07 51.6 3.9 33 89-126 4-36 (175)
217 TIGR00041 DTMP_kinase thymidyl 95.6 0.026 5.7E-07 51.0 6.0 37 89-125 3-39 (195)
218 PF12846 AAA_10: AAA-like doma 95.6 0.023 5.1E-07 54.2 5.8 40 94-135 6-45 (304)
219 PF13671 AAA_33: AAA domain; P 95.5 0.0092 2E-07 50.9 2.7 31 91-126 1-31 (143)
220 PF08433 KTI12: Chromatin asso 95.5 0.016 3.5E-07 55.9 4.5 36 91-126 3-38 (270)
221 COG0552 FtsY Signal recognitio 95.5 0.023 4.9E-07 56.0 5.5 41 88-128 138-178 (340)
222 cd01672 TMPK Thymidine monopho 95.5 0.029 6.3E-07 50.3 5.8 35 91-125 2-36 (200)
223 PRK14494 putative molybdopteri 95.4 0.025 5.4E-07 53.3 5.2 35 91-125 3-37 (229)
224 PF05729 NACHT: NACHT domain 95.4 0.016 3.4E-07 50.2 3.6 28 91-118 2-29 (166)
225 cd02021 GntK Gluconate kinase 95.3 0.016 3.4E-07 50.1 3.5 34 91-129 1-34 (150)
226 COG1618 Predicted nucleotide k 95.3 0.019 4.2E-07 51.0 3.8 32 92-123 8-39 (179)
227 PF13086 AAA_11: AAA domain; P 95.3 0.017 3.7E-07 52.8 3.7 35 91-125 19-61 (236)
228 PRK09270 nucleoside triphospha 95.2 0.035 7.6E-07 51.9 5.8 44 87-130 31-75 (229)
229 PRK10751 molybdopterin-guanine 95.2 0.036 7.8E-07 50.0 5.3 38 89-126 6-43 (173)
230 PTZ00035 Rad51 protein; Provis 95.1 0.036 7.9E-07 55.2 5.8 57 71-127 98-162 (337)
231 PF07728 AAA_5: AAA domain (dy 95.1 0.029 6.2E-07 47.9 4.4 42 93-137 3-44 (139)
232 COG1066 Sms Predicted ATP-depe 95.1 0.044 9.5E-07 55.4 6.0 53 74-127 76-130 (456)
233 TIGR02640 gas_vesic_GvpN gas v 95.1 0.045 9.7E-07 52.4 6.0 42 94-138 26-67 (262)
234 PRK09519 recA DNA recombinatio 95.1 0.042 9.2E-07 60.2 6.4 56 72-127 40-98 (790)
235 PRK10536 hypothetical protein; 95.0 0.057 1.2E-06 51.7 6.4 46 90-136 75-121 (262)
236 COG1102 Cmk Cytidylate kinase 95.0 0.02 4.3E-07 50.9 2.9 23 91-113 2-24 (179)
237 PF06414 Zeta_toxin: Zeta toxi 94.9 0.028 6E-07 51.4 4.0 39 87-127 13-51 (199)
238 PF13238 AAA_18: AAA domain; P 94.9 0.022 4.8E-07 47.2 3.0 22 92-113 1-22 (129)
239 PRK07773 replicative DNA helic 94.9 0.034 7.4E-07 62.3 5.2 55 72-126 199-255 (886)
240 PRK12339 2-phosphoglycerate ki 94.9 0.03 6.4E-07 51.5 4.0 34 89-126 3-36 (197)
241 TIGR00235 udk uridine kinase. 94.8 0.039 8.3E-07 50.8 4.6 40 88-129 5-44 (207)
242 PRK06547 hypothetical protein; 94.8 0.039 8.4E-07 49.6 4.4 37 86-127 12-48 (172)
243 PF13604 AAA_30: AAA domain; P 94.7 0.043 9.2E-07 50.3 4.7 38 88-125 17-54 (196)
244 KOG1533 Predicted GTPase [Gene 94.7 0.034 7.4E-07 52.2 4.0 43 94-136 7-50 (290)
245 PF08423 Rad51: Rad51; InterP 94.7 0.025 5.4E-07 54.2 3.1 61 71-131 18-86 (256)
246 PLN03186 DNA repair protein RA 94.7 0.05 1.1E-06 54.3 5.3 58 71-128 103-168 (342)
247 PRK05506 bifunctional sulfate 94.7 0.046 1E-06 59.0 5.5 43 87-129 458-500 (632)
248 PF13401 AAA_22: AAA domain; P 94.6 0.029 6.3E-07 46.9 3.1 37 89-125 4-45 (131)
249 TIGR00554 panK_bact pantothena 94.6 0.065 1.4E-06 52.3 5.7 43 88-130 61-105 (290)
250 PF00004 AAA: ATPase family as 94.5 0.045 9.8E-07 45.5 4.1 31 92-125 1-31 (132)
251 KOG0780 Signal recognition par 94.5 0.035 7.6E-07 55.6 3.7 50 88-137 100-150 (483)
252 PLN02796 D-glycerate 3-kinase 94.5 0.054 1.2E-06 54.0 5.0 41 88-128 99-139 (347)
253 PTZ00301 uridine kinase; Provi 94.4 0.079 1.7E-06 49.2 5.8 41 89-129 3-45 (210)
254 cd02024 NRK1 Nicotinamide ribo 94.4 0.037 8.1E-07 50.5 3.5 35 91-129 1-35 (187)
255 PLN03046 D-glycerate 3-kinase; 94.4 0.061 1.3E-06 54.9 5.3 42 88-129 211-252 (460)
256 TIGR01618 phage_P_loop phage n 94.4 0.035 7.6E-07 52.0 3.3 32 90-128 13-44 (220)
257 PF13173 AAA_14: AAA domain 94.4 0.055 1.2E-06 45.7 4.3 37 89-126 2-38 (128)
258 COG0468 RecA RecA/RadA recombi 94.4 0.076 1.6E-06 51.5 5.7 56 73-128 42-99 (279)
259 PRK06217 hypothetical protein; 94.4 0.049 1.1E-06 49.1 4.1 31 92-127 4-34 (183)
260 PHA02530 pseT polynucleotide k 94.3 0.042 9.1E-07 53.3 3.8 35 89-127 2-36 (300)
261 TIGR01313 therm_gnt_kin carboh 94.3 0.04 8.7E-07 48.3 3.3 31 93-128 2-32 (163)
262 PF01935 DUF87: Domain of unkn 94.2 0.078 1.7E-06 49.3 5.3 36 90-126 25-61 (229)
263 PRK05986 cob(I)alamin adenolsy 94.2 0.072 1.6E-06 48.7 4.9 35 91-125 24-58 (191)
264 PRK05537 bifunctional sulfate 94.2 0.061 1.3E-06 57.3 5.0 40 88-127 391-431 (568)
265 PRK00698 tmk thymidylate kinas 94.0 0.1 2.2E-06 47.3 5.5 36 89-124 3-38 (205)
266 PRK06851 hypothetical protein; 94.0 0.11 2.3E-06 52.4 5.9 40 86-125 211-250 (367)
267 PF00931 NB-ARC: NB-ARC domain 93.9 0.063 1.4E-06 51.3 4.1 48 87-134 17-66 (287)
268 PRK14495 putative molybdopteri 93.9 0.076 1.6E-06 54.5 4.7 35 91-125 3-37 (452)
269 PRK13946 shikimate kinase; Pro 93.8 0.069 1.5E-06 48.2 3.9 32 90-126 11-42 (184)
270 PF13479 AAA_24: AAA domain 93.8 0.068 1.5E-06 49.5 3.9 36 90-133 4-40 (213)
271 TIGR00379 cobB cobyrinic acid 93.7 0.085 1.9E-06 54.6 4.8 35 91-125 2-36 (449)
272 PRK06761 hypothetical protein; 93.6 0.084 1.8E-06 51.3 4.3 39 89-127 3-42 (282)
273 PRK03839 putative kinase; Prov 93.6 0.082 1.8E-06 47.3 4.0 30 92-126 3-32 (180)
274 PF03266 NTPase_1: NTPase; In 93.6 0.076 1.6E-06 47.6 3.7 31 92-122 2-32 (168)
275 PF13191 AAA_16: AAA ATPase do 93.6 0.1 2.2E-06 46.2 4.5 44 86-129 21-64 (185)
276 PRK04220 2-phosphoglycerate ki 93.6 0.13 2.8E-06 50.3 5.6 35 88-126 91-125 (301)
277 PRK12422 chromosomal replicati 93.5 0.082 1.8E-06 54.7 4.4 36 91-126 143-178 (445)
278 TIGR02239 recomb_RAD51 DNA rep 93.5 0.12 2.7E-06 51.0 5.4 57 72-128 77-141 (316)
279 PF09848 DUF2075: Uncharacteri 93.5 0.1 2.2E-06 52.2 4.8 38 89-126 1-40 (352)
280 TIGR00376 DNA helicase, putati 93.5 0.098 2.1E-06 56.6 5.0 35 90-124 174-208 (637)
281 PRK07933 thymidylate kinase; V 93.4 0.12 2.5E-06 48.1 4.9 35 91-125 2-36 (213)
282 PRK12338 hypothetical protein; 93.3 0.09 2E-06 51.9 4.1 34 89-126 4-37 (319)
283 PRK00784 cobyric acid synthase 93.3 0.11 2.3E-06 54.4 4.9 35 89-123 3-37 (488)
284 cd02020 CMPK Cytidine monophos 93.3 0.07 1.5E-06 45.4 2.9 31 91-126 1-31 (147)
285 PRK08118 topology modulation p 93.3 0.075 1.6E-06 47.4 3.2 21 93-113 5-25 (167)
286 cd00227 CPT Chloramphenicol (C 93.2 0.086 1.9E-06 47.1 3.4 34 90-126 3-36 (175)
287 COG1763 MobB Molybdopterin-gua 93.2 0.12 2.7E-06 45.9 4.4 37 90-126 3-39 (161)
288 TIGR00362 DnaA chromosomal rep 93.2 0.1 2.2E-06 53.1 4.4 36 91-126 138-175 (405)
289 PRK07261 topology modulation p 93.1 0.1 2.3E-06 46.6 3.9 21 93-113 4-24 (171)
290 COG1072 CoaA Panthothenate kin 93.1 0.23 4.9E-06 47.9 6.3 50 87-136 80-131 (283)
291 cd01131 PilT Pilus retraction 93.1 0.17 3.7E-06 46.3 5.3 35 91-125 3-38 (198)
292 PRK13973 thymidylate kinase; P 93.0 0.17 3.6E-06 46.9 5.3 37 89-125 3-39 (213)
293 PLN02924 thymidylate kinase 93.0 0.18 4E-06 47.1 5.4 38 88-125 15-52 (220)
294 COG0305 DnaB Replicative DNA h 93.0 0.19 4.1E-06 51.6 6.0 56 71-126 177-234 (435)
295 TIGR01359 UMP_CMP_kin_fam UMP- 93.0 0.075 1.6E-06 47.5 2.8 29 92-125 2-30 (183)
296 KOG0781 Signal recognition par 92.8 0.1 2.3E-06 53.6 3.8 42 88-129 377-418 (587)
297 TIGR02880 cbbX_cfxQ probable R 92.8 0.12 2.7E-06 50.1 4.2 35 91-125 60-98 (284)
298 PLN02165 adenylate isopentenyl 92.8 0.14 3E-06 50.9 4.4 38 84-126 38-75 (334)
299 COG0572 Udk Uridine kinase [Nu 92.7 0.15 3.2E-06 47.6 4.3 40 89-130 8-47 (218)
300 PLN02348 phosphoribulokinase 92.7 0.22 4.9E-06 50.4 5.9 45 87-131 47-106 (395)
301 KOG1534 Putative transcription 92.6 0.14 3.1E-06 47.5 4.0 39 91-129 5-43 (273)
302 cd04168 TetM_like Tet(M)-like 92.6 0.53 1.1E-05 44.4 8.1 39 291-330 89-127 (237)
303 PF00910 RNA_helicase: RNA hel 92.5 0.11 2.5E-06 42.5 3.1 24 93-116 2-25 (107)
304 cd00046 DEXDc DEAD-like helica 92.5 0.21 4.6E-06 40.9 4.7 32 92-123 3-36 (144)
305 PRK00149 dnaA chromosomal repl 92.5 0.13 2.9E-06 53.1 4.2 36 91-126 150-187 (450)
306 TIGR00073 hypB hydrogenase acc 92.5 0.35 7.6E-06 44.4 6.6 47 83-130 16-62 (207)
307 PRK13947 shikimate kinase; Pro 92.4 0.14 3.1E-06 45.1 3.8 31 92-127 4-34 (171)
308 CHL00181 cbbX CbbX; Provisiona 92.4 0.15 3.3E-06 49.6 4.3 27 92-118 62-88 (287)
309 TIGR02881 spore_V_K stage V sp 92.4 0.12 2.7E-06 49.2 3.6 26 92-117 45-70 (261)
310 PRK00652 lpxK tetraacyldisacch 92.4 0.17 3.6E-06 50.2 4.6 31 96-126 58-88 (325)
311 cd00544 CobU Adenosylcobinamid 92.4 0.17 3.7E-06 45.3 4.3 31 92-125 2-32 (169)
312 PRK12374 putative dithiobiotin 92.4 0.25 5.4E-06 46.3 5.5 42 291-332 136-177 (231)
313 COG1855 ATPase (PilT family) [ 92.3 0.14 2.9E-06 52.5 3.7 34 91-124 265-298 (604)
314 PRK14088 dnaA chromosomal repl 92.2 0.15 3.3E-06 52.7 4.1 35 92-126 133-169 (440)
315 PRK14489 putative bifunctional 92.2 0.22 4.9E-06 50.1 5.3 39 89-127 205-243 (366)
316 cd01428 ADK Adenylate kinase ( 92.2 0.18 4E-06 45.2 4.2 30 92-126 2-31 (194)
317 PLN02200 adenylate kinase fami 92.1 0.15 3.3E-06 48.1 3.7 25 89-113 43-67 (234)
318 KOG0744 AAA+-type ATPase [Post 92.1 0.12 2.5E-06 51.0 3.0 50 88-137 176-229 (423)
319 PRK14532 adenylate kinase; Pro 92.1 0.16 3.6E-06 45.6 3.8 29 92-125 3-31 (188)
320 PRK00091 miaA tRNA delta(2)-is 92.1 0.17 3.6E-06 49.9 4.1 34 89-127 4-37 (307)
321 TIGR01360 aden_kin_iso1 adenyl 92.0 0.16 3.4E-06 45.3 3.6 24 90-113 4-27 (188)
322 TIGR01650 PD_CobS cobaltochela 92.0 0.21 4.6E-06 49.4 4.7 44 92-138 67-110 (327)
323 cd01886 EF-G Elongation factor 92.0 0.84 1.8E-05 44.0 8.8 40 291-331 89-128 (270)
324 PRK06851 hypothetical protein; 92.0 0.33 7.1E-06 49.0 6.1 41 87-127 28-70 (367)
325 PF00437 T2SE: Type II/IV secr 92.0 0.17 3.7E-06 48.3 4.0 38 88-125 126-163 (270)
326 COG2256 MGS1 ATPase related to 91.9 0.16 3.6E-06 51.2 3.8 34 79-112 38-71 (436)
327 PF02562 PhoH: PhoH-like prote 91.8 0.19 4.2E-06 46.5 4.0 31 88-118 18-48 (205)
328 PF05496 RuvB_N: Holliday junc 91.7 0.12 2.7E-06 48.4 2.6 32 91-125 52-83 (233)
329 PRK14527 adenylate kinase; Pro 91.7 0.18 3.8E-06 45.7 3.6 25 89-113 6-30 (191)
330 PLN03025 replication factor C 91.7 0.27 5.9E-06 48.4 5.2 48 80-127 25-72 (319)
331 cd00464 SK Shikimate kinase (S 91.7 0.2 4.3E-06 43.1 3.7 30 92-126 2-31 (154)
332 smart00763 AAA_PrkA PrkA AAA d 91.7 0.19 4E-06 50.5 3.9 29 87-115 76-104 (361)
333 PF00308 Bac_DnaA: Bacterial d 91.6 0.22 4.8E-06 46.4 4.1 36 91-126 36-73 (219)
334 PRK04040 adenylate kinase; Pro 91.5 0.2 4.2E-06 45.7 3.6 25 90-114 3-27 (188)
335 PRK13948 shikimate kinase; Pro 91.4 0.27 5.9E-06 44.6 4.5 32 90-126 11-42 (182)
336 PRK08356 hypothetical protein; 91.4 0.2 4.3E-06 45.6 3.6 28 88-119 4-31 (195)
337 cd01884 EF_Tu EF-Tu subfamily. 91.4 2 4.3E-05 39.2 10.2 41 290-330 89-129 (195)
338 PRK00411 cdc6 cell division co 91.3 0.39 8.4E-06 48.3 5.9 41 90-130 56-98 (394)
339 TIGR03263 guanyl_kin guanylate 91.3 0.16 3.4E-06 45.2 2.7 24 90-113 2-25 (180)
340 COG2074 2-phosphoglycerate kin 91.2 0.19 4.1E-06 47.9 3.3 35 88-126 88-122 (299)
341 TIGR02322 phosphon_PhnN phosph 91.2 0.19 4.2E-06 44.7 3.2 25 91-115 3-27 (179)
342 PRK01184 hypothetical protein; 91.2 0.25 5.4E-06 44.3 3.9 30 90-125 2-31 (184)
343 PF07724 AAA_2: AAA domain (Cd 91.2 0.31 6.8E-06 43.7 4.5 38 89-126 3-41 (171)
344 KOG2749 mRNA cleavage and poly 91.1 0.4 8.7E-06 47.7 5.5 35 96-130 110-144 (415)
345 TIGR02782 TrbB_P P-type conjug 91.1 0.25 5.5E-06 48.3 4.3 37 89-125 132-170 (299)
346 PRK13764 ATPase; Provisional 91.1 0.26 5.7E-06 52.7 4.6 35 90-124 258-292 (602)
347 PRK05057 aroK shikimate kinase 91.0 0.27 5.9E-06 43.9 4.0 32 91-127 6-37 (172)
348 PRK12402 replication factor C 91.0 0.32 6.9E-06 47.6 4.8 46 80-125 27-74 (337)
349 COG1936 Predicted nucleotide k 90.8 0.27 5.8E-06 44.3 3.7 27 91-121 2-28 (180)
350 PRK01906 tetraacyldisaccharide 90.8 0.26 5.6E-06 49.2 4.0 29 98-126 67-95 (338)
351 PRK03731 aroL shikimate kinase 90.8 0.3 6.5E-06 43.1 4.1 30 92-126 5-34 (171)
352 cd04170 EF-G_bact Elongation f 90.8 2.6 5.7E-05 40.2 10.9 41 291-332 89-129 (268)
353 COG2403 Predicted GTPase [Gene 90.7 0.44 9.6E-06 47.7 5.4 43 83-125 121-163 (449)
354 PRK14491 putative bifunctional 90.7 0.4 8.6E-06 51.5 5.5 38 89-126 10-47 (597)
355 cd01129 PulE-GspE PulE/GspE Th 90.7 0.29 6.3E-06 47.1 4.1 37 88-124 79-115 (264)
356 TIGR00682 lpxK tetraacyldisacc 90.7 0.23 5.1E-06 48.9 3.5 37 89-125 29-66 (311)
357 PRK14531 adenylate kinase; Pro 90.6 0.27 5.9E-06 44.2 3.6 22 92-113 5-26 (183)
358 PF05970 PIF1: PIF1-like helic 90.5 0.33 7.1E-06 48.9 4.4 53 88-140 21-81 (364)
359 PRK14528 adenylate kinase; Pro 90.5 0.34 7.3E-06 43.9 4.1 22 92-113 4-25 (186)
360 PRK14086 dnaA chromosomal repl 90.5 0.3 6.5E-06 52.3 4.3 36 91-126 316-353 (617)
361 PRK13695 putative NTPase; Prov 90.4 0.43 9.3E-06 42.4 4.8 30 92-121 3-32 (174)
362 PRK10463 hydrogenase nickel in 90.4 0.48 1E-05 46.2 5.3 45 84-129 99-143 (290)
363 PRK14721 flhF flagellar biosyn 90.3 0.48 1E-05 48.7 5.5 41 89-129 191-233 (420)
364 PF13555 AAA_29: P-loop contai 90.3 0.37 8.1E-06 35.9 3.5 24 91-114 25-48 (62)
365 COG0237 CoaE Dephospho-CoA kin 90.3 0.4 8.7E-06 44.3 4.5 31 90-126 3-33 (201)
366 PRK00625 shikimate kinase; Pro 90.3 0.29 6.4E-06 44.0 3.5 30 92-126 3-32 (173)
367 cd02022 DPCK Dephospho-coenzym 90.2 0.31 6.7E-06 43.7 3.7 29 92-126 2-30 (179)
368 PF01580 FtsK_SpoIIIE: FtsK/Sp 90.2 0.31 6.6E-06 44.5 3.7 36 88-125 39-78 (205)
369 COG0378 HypB Ni2+-binding GTPa 90.2 0.67 1.5E-05 42.5 5.7 39 90-129 14-52 (202)
370 PRK12337 2-phosphoglycerate ki 90.2 0.42 9E-06 49.5 4.9 36 88-127 254-289 (475)
371 PRK00440 rfc replication facto 90.1 0.44 9.6E-06 46.2 5.0 49 79-127 28-76 (319)
372 TIGR01351 adk adenylate kinase 90.0 0.25 5.4E-06 45.5 3.0 21 93-113 3-23 (210)
373 COG0563 Adk Adenylate kinase a 89.9 0.28 6.1E-06 44.3 3.1 19 94-112 5-23 (178)
374 PRK14730 coaE dephospho-CoA ki 89.9 0.41 8.8E-06 43.8 4.2 31 91-126 3-33 (195)
375 PRK02496 adk adenylate kinase; 89.9 0.34 7.4E-06 43.4 3.7 22 92-113 4-25 (184)
376 COG0194 Gmk Guanylate kinase [ 89.9 0.29 6.4E-06 44.5 3.2 25 88-112 3-27 (191)
377 PRK14530 adenylate kinase; Pro 89.8 0.31 6.8E-06 45.0 3.5 22 92-113 6-27 (215)
378 PRK13975 thymidylate kinase; P 89.8 0.36 7.7E-06 43.5 3.8 25 90-114 3-27 (196)
379 PRK04195 replication factor C 89.8 0.45 9.8E-06 49.7 5.0 35 89-126 39-73 (482)
380 PF13521 AAA_28: AAA domain; P 89.7 0.29 6.4E-06 42.9 3.0 20 93-112 3-22 (163)
381 TIGR03754 conj_TOL_TraD conjug 89.7 0.55 1.2E-05 50.6 5.5 41 87-129 180-220 (643)
382 KOG2878 Predicted kinase [Gene 89.7 0.33 7.2E-06 44.8 3.3 38 89-126 31-71 (282)
383 PRK04182 cytidylate kinase; Pr 89.6 0.3 6.6E-06 43.0 3.1 30 91-125 2-31 (180)
384 PRK14490 putative bifunctional 89.6 0.62 1.3E-05 46.9 5.6 37 89-126 5-41 (369)
385 TIGR00635 ruvB Holliday juncti 89.5 0.54 1.2E-05 45.6 5.0 33 92-127 33-65 (305)
386 PF02606 LpxK: Tetraacyldisacc 89.5 0.33 7.1E-06 48.2 3.5 29 98-126 46-74 (326)
387 COG0125 Tmk Thymidylate kinase 89.5 0.68 1.5E-05 43.0 5.4 37 89-125 3-39 (208)
388 COG0703 AroK Shikimate kinase 89.4 0.33 7.1E-06 43.7 3.1 37 95-136 8-50 (172)
389 PF05707 Zot: Zonular occluden 89.4 0.33 7E-06 44.2 3.2 34 91-125 2-36 (193)
390 TIGR03783 Bac_Flav_CT_G Bacter 89.4 0.49 1.1E-05 52.8 5.1 46 88-135 439-485 (829)
391 KOG3347 Predicted nucleotide k 89.4 0.31 6.7E-06 42.9 2.8 17 95-111 13-29 (176)
392 PRK00279 adk adenylate kinase; 89.3 0.33 7.1E-06 44.8 3.2 29 92-125 3-31 (215)
393 PF00154 RecA: recA bacterial 89.1 0.5 1.1E-05 46.8 4.5 66 74-139 35-105 (322)
394 TIGR03015 pepcterm_ATPase puta 89.1 0.31 6.7E-06 46.1 2.9 27 89-115 43-69 (269)
395 PRK14731 coaE dephospho-CoA ki 89.1 0.61 1.3E-05 43.0 4.8 32 89-126 5-36 (208)
396 PRK05800 cobU adenosylcobinami 88.9 0.46 1E-05 42.5 3.7 32 91-125 3-34 (170)
397 PRK14087 dnaA chromosomal repl 88.8 0.44 9.6E-06 49.4 4.0 36 91-126 143-180 (450)
398 PRK00081 coaE dephospho-CoA ki 88.8 0.62 1.3E-05 42.4 4.6 31 90-126 3-33 (194)
399 PF00580 UvrD-helicase: UvrD/R 88.7 0.82 1.8E-05 43.8 5.6 38 88-126 13-54 (315)
400 TIGR00152 dephospho-CoA kinase 88.6 0.44 9.6E-06 42.9 3.5 30 92-126 2-31 (188)
401 PRK10865 protein disaggregatio 88.6 0.52 1.1E-05 52.8 4.6 39 88-126 198-243 (857)
402 PLN02748 tRNA dimethylallyltra 88.4 0.54 1.2E-05 48.9 4.3 34 88-126 21-54 (468)
403 PLN02840 tRNA dimethylallyltra 88.4 0.5 1.1E-05 48.4 4.0 35 88-127 20-54 (421)
404 cd03113 CTGs CTP synthetase (C 88.3 4 8.7E-05 38.8 9.6 42 91-132 3-45 (255)
405 PRK13342 recombination factor 88.3 0.52 1.1E-05 48.2 4.1 34 80-113 27-60 (413)
406 PF02492 cobW: CobW/HypB/UreG, 88.3 0.78 1.7E-05 41.1 4.8 38 91-129 2-39 (178)
407 KOG3354 Gluconate kinase [Carb 88.2 0.61 1.3E-05 41.4 3.8 41 89-134 12-52 (191)
408 cd00820 PEPCK_HprK Phosphoenol 88.2 0.75 1.6E-05 38.1 4.2 22 89-110 15-36 (107)
409 TIGR02173 cyt_kin_arch cytidyl 88.2 0.44 9.6E-06 41.6 3.1 31 91-126 2-32 (171)
410 PTZ00088 adenylate kinase 1; P 88.2 0.44 9.5E-06 44.9 3.2 30 92-126 9-38 (229)
411 PF10443 RNA12: RNA12 protein; 88.2 0.74 1.6E-05 47.1 5.0 48 77-127 5-52 (431)
412 TIGR02928 orc1/cdc6 family rep 88.1 0.92 2E-05 45.0 5.7 39 89-127 40-84 (365)
413 PRK00080 ruvB Holliday junctio 88.1 0.81 1.8E-05 45.1 5.2 33 91-126 53-85 (328)
414 PRK13949 shikimate kinase; Pro 88.1 0.48 1E-05 42.3 3.3 28 94-126 6-33 (169)
415 PLN02318 phosphoribulokinase/u 88.1 0.64 1.4E-05 49.7 4.6 39 87-129 63-101 (656)
416 cd02026 PRK Phosphoribulokinas 88.0 0.34 7.4E-06 46.8 2.4 37 92-130 2-38 (273)
417 TIGR00313 cobQ cobyric acid sy 88.0 0.6 1.3E-05 48.8 4.4 35 91-125 1-35 (475)
418 TIGR02524 dot_icm_DotB Dot/Icm 88.0 0.87 1.9E-05 45.8 5.4 41 88-128 133-175 (358)
419 PRK11545 gntK gluconate kinase 87.9 0.52 1.1E-05 41.7 3.4 29 96-129 2-30 (163)
420 PRK14738 gmk guanylate kinase; 87.8 0.52 1.1E-05 43.4 3.4 23 88-110 12-34 (206)
421 TIGR02768 TraA_Ti Ti-type conj 87.7 0.65 1.4E-05 51.2 4.7 35 89-123 368-402 (744)
422 PRK00300 gmk guanylate kinase; 87.6 0.47 1E-05 43.1 3.0 25 89-113 5-29 (205)
423 PRK07414 cob(I)yrinic acid a,c 87.6 0.91 2E-05 41.1 4.7 36 89-125 22-57 (178)
424 PRK14733 coaE dephospho-CoA ki 87.5 0.81 1.8E-05 42.3 4.5 32 90-126 7-38 (204)
425 PRK08154 anaerobic benzoate ca 87.5 0.58 1.3E-05 46.0 3.7 34 88-126 132-165 (309)
426 PRK07429 phosphoribulokinase; 87.4 0.67 1.4E-05 46.0 4.1 41 88-130 7-47 (327)
427 TIGR03346 chaperone_ClpB ATP-d 87.3 0.88 1.9E-05 51.0 5.5 48 90-137 596-646 (852)
428 COG3973 Superfamily I DNA and 87.2 0.84 1.8E-05 48.5 4.8 47 80-126 217-269 (747)
429 KOG1969 DNA replication checkp 87.2 0.71 1.5E-05 50.0 4.3 40 84-126 321-360 (877)
430 PLN02459 probable adenylate ki 87.1 0.64 1.4E-05 44.7 3.7 22 92-113 32-53 (261)
431 PF10662 PduV-EutP: Ethanolami 87.1 0.59 1.3E-05 40.8 3.1 17 95-111 7-23 (143)
432 PRK10078 ribose 1,5-bisphospho 87.1 0.55 1.2E-05 42.3 3.1 23 90-112 3-25 (186)
433 PLN03210 Resistant to P. syrin 87.1 0.83 1.8E-05 52.9 5.2 37 88-124 206-242 (1153)
434 PRK14737 gmk guanylate kinase; 86.9 0.59 1.3E-05 42.4 3.2 24 88-111 3-26 (186)
435 COG1428 Deoxynucleoside kinase 86.8 0.66 1.4E-05 43.0 3.4 26 89-114 4-29 (216)
436 PRK13873 conjugal transfer ATP 86.7 0.97 2.1E-05 50.4 5.3 47 88-136 442-490 (811)
437 COG3598 RepA RecA-family ATPas 86.7 1.2 2.6E-05 44.0 5.2 36 79-116 81-116 (402)
438 PRK13976 thymidylate kinase; P 86.6 1.3 2.7E-05 41.1 5.3 37 91-128 2-40 (209)
439 TIGR01420 pilT_fam pilus retra 86.6 0.96 2.1E-05 45.1 4.8 36 88-123 121-157 (343)
440 cd01918 HprK_C HprK/P, the bif 86.6 0.71 1.5E-05 40.6 3.4 27 89-119 14-40 (149)
441 TIGR00174 miaA tRNA isopenteny 86.5 0.59 1.3E-05 45.6 3.1 32 91-127 1-32 (287)
442 PRK13833 conjugal transfer pro 86.5 0.83 1.8E-05 45.3 4.2 35 90-124 145-181 (323)
443 PF01745 IPT: Isopentenyl tran 86.5 0.97 2.1E-05 42.2 4.3 33 90-125 2-34 (233)
444 PLN02422 dephospho-CoA kinase 86.4 0.88 1.9E-05 43.0 4.2 30 91-126 3-32 (232)
445 TIGR00101 ureG urease accessor 86.4 1.2 2.5E-05 41.0 4.9 38 91-129 3-40 (199)
446 TIGR00150 HI0065_YjeE ATPase, 86.4 0.71 1.5E-05 39.8 3.2 26 88-113 21-46 (133)
447 smart00487 DEXDc DEAD-like hel 86.3 0.99 2.1E-05 39.3 4.3 35 90-124 25-61 (201)
448 TIGR02746 TraC-F-type type-IV 86.3 0.94 2E-05 50.2 5.0 45 92-136 433-478 (797)
449 PF02223 Thymidylate_kin: Thym 86.2 0.77 1.7E-05 41.1 3.6 31 96-127 3-33 (186)
450 TIGR03346 chaperone_ClpB ATP-d 86.2 0.88 1.9E-05 51.0 4.7 41 86-126 191-238 (852)
451 TIGR03743 SXT_TraD conjugative 86.2 1.2 2.6E-05 48.2 5.6 40 87-128 176-215 (634)
452 PRK10490 sensor protein KdpD; 86.2 29 0.00063 39.3 16.7 42 87-128 22-65 (895)
453 TIGR00929 VirB4_CagE type IV s 86.1 1 2.2E-05 49.7 5.1 48 87-136 434-483 (785)
454 TIGR03689 pup_AAA proteasome A 86.1 0.77 1.7E-05 48.3 3.9 36 91-126 218-258 (512)
455 PRK14734 coaE dephospho-CoA ki 85.9 1.1 2.4E-05 41.1 4.5 31 90-126 2-32 (200)
456 COG3854 SpoIIIAA ncharacterize 85.9 1.1 2.5E-05 42.3 4.5 34 92-125 140-178 (308)
457 PF01268 FTHFS: Formate--tetra 85.9 1.6 3.5E-05 46.0 6.0 42 97-140 66-107 (557)
458 PF07726 AAA_3: ATPase family 85.9 0.49 1.1E-05 40.6 1.9 43 93-138 3-45 (131)
459 PF07088 GvpD: GvpD gas vesicl 85.8 0.62 1.4E-05 47.2 2.9 43 83-126 4-46 (484)
460 PRK14732 coaE dephospho-CoA ki 85.8 0.79 1.7E-05 42.0 3.4 29 92-126 2-30 (196)
461 cd00071 GMPK Guanosine monopho 85.7 0.61 1.3E-05 40.0 2.5 22 92-113 2-23 (137)
462 PF03193 DUF258: Protein of un 85.7 0.61 1.3E-05 41.5 2.5 22 90-111 36-57 (161)
463 PHA02544 44 clamp loader, smal 85.6 1.2 2.6E-05 43.4 4.8 36 89-127 43-78 (316)
464 PF01202 SKI: Shikimate kinase 85.5 0.65 1.4E-05 40.7 2.6 25 98-127 1-25 (158)
465 PF04665 Pox_A32: Poxvirus A32 85.5 1.5 3.2E-05 41.7 5.2 38 86-125 12-49 (241)
466 cd04163 Era Era subfamily. Er 85.4 1.3 2.9E-05 37.4 4.5 38 291-329 84-121 (168)
467 cd01130 VirB11-like_ATPase Typ 85.3 0.67 1.5E-05 41.8 2.7 34 89-123 25-58 (186)
468 PF00406 ADK: Adenylate kinase 85.2 0.66 1.4E-05 40.1 2.5 19 95-113 2-20 (151)
469 KOG2004 Mitochondrial ATP-depe 85.2 0.66 1.4E-05 50.1 2.9 30 87-116 436-465 (906)
470 KOG3062 RNA polymerase II elon 85.1 1.4 3.1E-05 41.3 4.8 36 91-126 3-39 (281)
471 PRK13894 conjugal transfer ATP 85.0 1 2.2E-05 44.6 4.0 38 89-126 148-187 (319)
472 PRK13721 conjugal transfer ATP 84.9 1 2.2E-05 50.4 4.5 44 93-136 453-497 (844)
473 PF02572 CobA_CobO_BtuR: ATP:c 84.9 0.91 2E-05 40.9 3.3 34 91-125 6-39 (172)
474 COG3911 Predicted ATPase [Gene 84.9 0.96 2.1E-05 39.9 3.3 29 88-120 8-36 (183)
475 PRK10865 protein disaggregatio 84.6 1.2 2.6E-05 50.0 4.8 47 91-137 600-649 (857)
476 PRK14729 miaA tRNA delta(2)-is 84.6 1.2 2.6E-05 43.7 4.3 31 90-126 5-35 (300)
477 PRK09825 idnK D-gluconate kina 84.6 0.95 2.1E-05 40.7 3.3 35 90-129 4-38 (176)
478 COG4185 Uncharacterized protei 84.5 0.32 7E-06 43.3 0.2 35 89-126 2-36 (187)
479 PRK13891 conjugal transfer pro 84.5 1.4 3E-05 49.5 5.2 41 87-129 488-529 (852)
480 PF01121 CoaE: Dephospho-CoA k 84.4 1 2.2E-05 40.8 3.4 30 91-126 2-31 (180)
481 PF13476 AAA_23: AAA domain; P 84.2 1.1 2.3E-05 39.9 3.5 27 90-116 20-46 (202)
482 PRK00049 elongation factor Tu; 84.0 6.1 0.00013 40.2 9.3 40 291-330 100-139 (396)
483 PLN03209 translocon at the inn 84.0 2 4.3E-05 45.9 5.8 36 87-127 79-114 (576)
484 PRK13477 bifunctional pantoate 84.0 0.96 2.1E-05 47.6 3.5 36 88-128 283-318 (512)
485 PRK00023 cmk cytidylate kinase 83.9 1.2 2.7E-05 41.6 3.9 25 89-113 4-28 (225)
486 KOG0991 Replication factor C, 83.9 1.1 2.4E-05 42.5 3.4 42 84-125 43-84 (333)
487 COG2874 FlaH Predicted ATPases 83.8 2.2 4.8E-05 39.8 5.3 39 88-126 27-65 (235)
488 PF08477 Miro: Miro-like prote 83.8 0.99 2.2E-05 36.8 2.9 18 94-111 4-21 (119)
489 PRK12740 elongation factor G; 83.7 7.1 0.00015 42.5 10.2 40 291-331 85-124 (668)
490 COG2909 MalT ATP-dependent tra 83.6 2.6 5.7E-05 46.5 6.6 46 80-126 28-73 (894)
491 PRK14526 adenylate kinase; Pro 83.6 1 2.2E-05 41.8 3.2 22 92-113 3-24 (211)
492 CHL00095 clpC Clp protease ATP 83.4 1.5 3.3E-05 48.9 4.9 46 80-125 191-243 (821)
493 PRK00741 prfC peptide chain re 83.3 4.9 0.00011 42.6 8.5 40 290-330 103-142 (526)
494 PRK14962 DNA polymerase III su 83.3 0.98 2.1E-05 47.1 3.2 24 91-114 38-61 (472)
495 COG0645 Predicted kinase [Gene 83.2 1.1 2.3E-05 40.2 3.0 24 90-113 2-25 (170)
496 COG1663 LpxK Tetraacyldisaccha 83.1 1 2.3E-05 44.6 3.1 31 98-128 58-88 (336)
497 TIGR00503 prfC peptide chain r 83.1 5.6 0.00012 42.2 8.8 40 290-330 104-143 (527)
498 TIGR03345 VI_ClpV1 type VI sec 83.0 1.3 2.9E-05 49.5 4.4 47 91-137 598-647 (852)
499 TIGR01448 recD_rel helicase, p 83.0 1.5 3.3E-05 48.2 4.7 35 89-123 338-374 (720)
500 PF01591 6PF2K: 6-phosphofruct 83.0 2.4 5.2E-05 39.8 5.4 40 87-126 10-49 (222)
No 1
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-53 Score=390.67 Aligned_cols=293 Identities=40% Similarity=0.660 Sum_probs=259.8
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEe
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALE 158 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~e 158 (390)
.+++++.+...++++++|||||||||+++.||..++.-+.+||+|++||+|+++|.|+++.+ ..|+.|+|.++ |+++|
T Consensus 9 ~l~nil~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkft-k~pt~V~Gf~n-LfAME 86 (323)
T KOG2825|consen 9 TLQNILEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFT-KTPTKVEGFEN-LFAME 86 (323)
T ss_pred hHHHHhhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhc-CCCccccChhh-heeee
Confidence 67888999999999999999999999999999999999999999999999999999999987 57899999988 99999
Q ss_pred cChHHHHHHHHhhhhhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhc------------------
Q 016417 159 INPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISK------------------ 220 (390)
Q Consensus 159 id~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~------------------ 220 (390)
|||.....+..+.... ....+... |.+++.+... ..||+||++++.+
T Consensus 87 IDp~~e~~~~~~m~~~---~~~n~~~~--g~g~l~e~~~----------~~Pgideamsfae~~klvk~~~F~~vVFDTA 151 (323)
T KOG2825|consen 87 IDPNVEMGDMPEMFGN---AANNEGSD--GKGMLQELAN----------AFPGIDEAMSFAEVMKLVKGMNFDVVVFDTA 151 (323)
T ss_pred cCCchhhhhhHHHhhc---cccccccc--chhHHHHHHh----------cCCChhHHHhHHHHHHHhhccccceEEeccC
Confidence 9999766555443221 11222221 2222333222 3699999998754
Q ss_pred --cceeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 016417 221 --GHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQ-NRQGASDKLERLRERMVKVRELFRDTDSTEFVIVT 297 (390)
Q Consensus 221 --g~tLrlL~lp~~l~~~l~~ll~l~~~~~~~~~~~~~~~g~~~-~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt 297 (390)
|||||+|.+|..+...++++++++.++....+.+.++||.+. ..+++..+++.+++.++++++.++||+.|.|++|+
T Consensus 152 PTGHTLRlL~fP~~lek~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVc 231 (323)
T KOG2825|consen 152 PTGHTLRLLQFPTTLEKGLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVC 231 (323)
T ss_pred CCcceehhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEE
Confidence 999999999999999999999999999999999999999864 67799999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCCCC-CchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCC
Q 016417 298 IPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSA-SDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIR 376 (390)
Q Consensus 298 ~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~~~-~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~ 376 (390)
.||.+|+.|++|+++.|.++++++..+|||+++++.. .+|+.|+.|++.|+|||++|.++ +.+.+++++|+++.||+
T Consensus 232 I~eflslyEteRliqeL~k~~idthnIIVNQLL~~~~~~~ck~C~ar~k~Q~kyLdqi~el--yedfhv~klPl~~~Evr 309 (323)
T KOG2825|consen 232 IAEFLSLYETERLIQELAKQGIDTHNIIVNQLLFPDNEVSCKKCAARRKMQSKYLDQIEEL--YEDFHVVKLPLLPMEVR 309 (323)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcccceeeeeccCCCCccchHHHHHHHHHHHHHhhhHHHH--Hhhcceeecccchhhhc
Confidence 9999999999999999999999999999999998776 78999999999999999999884 46799999999999999
Q ss_pred CHHHHHHHHHHhhC
Q 016417 377 GVPALRFMGDIIWK 390 (390)
Q Consensus 377 G~~~L~~l~~~~~~ 390 (390)
|+++|+.+++.+|+
T Consensus 310 G~~al~~fse~l~k 323 (323)
T KOG2825|consen 310 GVEALNFFSEILLK 323 (323)
T ss_pred CHHHHHHHHHHhcC
Confidence 99999999999996
No 2
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=100.00 E-value=3.8e-52 Score=405.61 Aligned_cols=284 Identities=42% Similarity=0.652 Sum_probs=232.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEecChHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFR 169 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid~~~~~~~~~ 169 (390)
++++++|||||||||+|+++|.++|++|+|||++++||+|+++++||.+.+ +.++.+.+.++ |+++|+|++...++|+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~-~~~~~v~~~~~-L~a~eid~~~~~~~~~ 79 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLG-GEPTKVEGVPN-LSAMEIDPEAELEEYW 79 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--B-SS-EEETTCSS-EEEEE--HHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCC-CCCeEecCCCC-ceeeecCHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999885 47888887676 9999999999999988
Q ss_pred hhhhhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhc--------------------cceeccccC
Q 016417 170 NVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISK--------------------GHTLRLLSL 229 (390)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~--------------------g~tLrlL~l 229 (390)
.......... +.......+.. +. ...+||++|++++.+ ||+||+|++
T Consensus 80 ~~~~~~~~~~----~~~~~~~~~~~--------~~-~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~l 146 (305)
T PF02374_consen 80 EEVQKDLSSL----LPLIGLERILD--------EE-LSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSL 146 (305)
T ss_dssp HHHHHGCSTC----HHCHHHHHHHH--------HH-TTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHH
T ss_pred HHHHhhhccc----hhhhhhHHHHH--------HH-HhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhH
Confidence 7654322211 11111111111 11 124699999998765 999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHH
Q 016417 230 PDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSR 309 (390)
Q Consensus 230 p~~l~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r 309 (390)
|+.+++|+++++++++++.++.+.+.+.-......+++.+.++.+++++++++++|+||+.|+|++|++||.+++.|++|
T Consensus 147 P~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r 226 (305)
T PF02374_consen 147 PERLRWWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETER 226 (305)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHH
Confidence 99999999999999998888777765521112234578899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcceEEEcCccCCCCCchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCCCHHHHHHHHHHhh
Q 016417 310 LSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDIIW 389 (390)
Q Consensus 310 ~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~G~~~L~~l~~~~~ 389 (390)
+++.|+++|+++.++||||++|+...+|++|+.|.+.|+++|++|++ .|.++|++.+|+++.||+|+++|+++++.||
T Consensus 227 ~~~~L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~--~f~~~~v~~vp~~~~ev~G~~~L~~~~~~L~ 304 (305)
T PF02374_consen 227 LLTELKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEE--SFPDLPVVKVPLLPEEVRGLDALEALADHLY 304 (305)
T ss_dssp HHHHHHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHH--HTTTSEEEEEE--SS-S-SHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHH--HhcCCCEEEecCCCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999987899999999999999999998 6899999999999999999999999999999
Q ss_pred C
Q 016417 390 K 390 (390)
Q Consensus 390 ~ 390 (390)
|
T Consensus 305 ~ 305 (305)
T PF02374_consen 305 K 305 (305)
T ss_dssp -
T ss_pred C
Confidence 6
No 3
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.4e-44 Score=348.25 Aligned_cols=281 Identities=38% Similarity=0.616 Sum_probs=239.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEecChHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEF 168 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid~~~~~~~~ 168 (390)
.++++++|||||||||+|+++|+.+|+.|++||+|++||+|||++.|+.+++ ..+..+. + +|+++++|++...++|
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg-~~~~~I~--~-nL~a~eiD~~~~l~ey 77 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELG-HDPRKVG--P-NLDALELDPEKALEEY 77 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccC-CchhhcC--C-CCceeeecHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999765 3555554 4 4999999999999999
Q ss_pred HhhhhhcCCCcchhhhcccch-hhHHHHhhhhhcccccCCCCCChhHHHHhhc--------------------cceeccc
Q 016417 169 RNVTQKDGGTGVKDFMDGMGL-GMLVEQLGELKLGELLDTPPPGLDEAIAISK--------------------GHTLRLL 227 (390)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~-~~~~e~L~~~~~~~lid~~pPG~de~~~l~~--------------------g~tLrlL 227 (390)
|+..... ....+...++ +...+++. ..||++|++++.+ |||||+|
T Consensus 78 ~~~v~~~----~~~~~~~~~l~~~~~~e~~----------~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL 143 (322)
T COG0003 78 WDEVKDY----LARLLRTRGLGGIYADELA----------TLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLL 143 (322)
T ss_pred HHHHHHH----HHhhccccccchhHHHHHh----------hCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHh
Confidence 9865421 1122221111 11222222 4799999998765 9999999
Q ss_pred cCchHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHH
Q 016417 228 SLPDFLDASIGKILK-LREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSE 306 (390)
Q Consensus 228 ~lp~~l~~~l~~ll~-l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~e 306 (390)
++|+.+++|++++++ .++++......++...|.....+.+.+.|+.+++++.++++.|.||..|.+++|++|+.+++.|
T Consensus 144 ~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e 223 (322)
T COG0003 144 SLPEVLGWYLEKLFKPRRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYE 223 (322)
T ss_pred ccHHHHHHHHHhhhhhHHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHH
Confidence 999999999999996 6666666666666666655556778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceEEEcCccCCCCCchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCCCHHHHHHHHH
Q 016417 307 SSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGD 386 (390)
Q Consensus 307 a~r~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~G~~~L~~l~~ 386 (390)
+.|++..|.++++++.+||+|+++|... +++||..+.+.|++++.++.+ .|+++++..+|++..|++|.++|.+|++
T Consensus 224 ~~ra~~~l~~~~i~v~~vi~n~~~p~~~-~~~~~~~~~~~q~~~l~~~~~--~f~~~~v~~vp~~~ee~~g~~~l~~l~~ 300 (322)
T COG0003 224 TKRAVERLSLYGIPVDAVIVNKILPDEA-DQPFLEARRKIQQKYLKELEE--TFSDLAVVKVPLLAEEPVGLEALEKLGD 300 (322)
T ss_pred HHHHHHHHHHcCCchheeeeeccccccc-ccHHHHHHHHHHHHHHHHHHH--hhcccceEEecccccccccHHHHHHHHH
Confidence 9999999999999999999999999875 567999999999999999988 7899999999999999999999999999
Q ss_pred HhhC
Q 016417 387 IIWK 390 (390)
Q Consensus 387 ~~~~ 390 (390)
.+++
T Consensus 301 ~l~~ 304 (322)
T COG0003 301 LLYG 304 (322)
T ss_pred hccC
Confidence 8874
No 4
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=100.00 E-value=4.4e-37 Score=292.89 Aligned_cols=233 Identities=41% Similarity=0.642 Sum_probs=183.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEecChHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFR 169 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid~~~~~~~~~ 169 (390)
++++++||||+||||+|+++|..+|+.|+|||+||+||+++++++||.+.+ ..+.++.+.++ |+++++|++...++|+
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~~~-~~~~~~~g~~~-L~~~~id~~~~~~~~~ 78 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFG-KGPTPVKGVEN-LSAMEIDPQEALEEYR 78 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCccC-CCCcccccCCC-ceEEecCHHHHHHHHH
Confidence 378899999999999999999999999999999999999999999998753 23345555555 9999999999988876
Q ss_pred hhhhhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhc--------------------cceeccccC
Q 016417 170 NVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISK--------------------GHTLRLLSL 229 (390)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~--------------------g~tLrlL~l 229 (390)
.......... + +...+.+.+. +.+ .+||++|++.+.+ ||++++|.+
T Consensus 79 ~~~~~~~~~~----~---~~~~~~~~~~-----~~~--~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~l 144 (254)
T cd00550 79 QEVLEPIEAN----L---LLEMLKGILE-----EEL--ESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSL 144 (254)
T ss_pred HHHHHHHHhh----c---cchhHHHHHH-----HHh--cCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHh
Confidence 5332211100 0 0000000000 000 1245444443321 677777777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHH
Q 016417 230 PDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSR 309 (390)
Q Consensus 230 p~~l~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r 309 (390)
|+.+.+ +.+.+.|+..|++++|++|+.+++.+++|
T Consensus 145 p~~l~~---------------------------------------------~~~~l~d~~~~~~vlV~~p~~~~~~e~~r 179 (254)
T cd00550 145 PTVLSW---------------------------------------------AREILSDPERTSFRLVCIPEKMSLYETER 179 (254)
T ss_pred HHHHHH---------------------------------------------HHHHhcCCcceEEEEEeCCChhHHHHHHH
Confidence 766542 34458999999999999999999999999
Q ss_pred HHHHHHhCCCCcceEEEcCccCCCCCchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCCCHHHHHHHH
Q 016417 310 LSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMG 385 (390)
Q Consensus 310 ~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~G~~~L~~l~ 385 (390)
+++.|+++|+++.|+|+||+.++....|++|+.+.+.|+++|++|++ .|.++|++++|+++.||+|+++|+.|+
T Consensus 180 ~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~--~~~~~~i~~vp~~~~e~~g~~~L~~~~ 253 (254)
T cd00550 180 AIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEE--LFSDLPVAKLPLLPEEVVGLEKLEQFA 253 (254)
T ss_pred HHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHH--HhcCCCEEEeecCCCCCCCHHHHHHHh
Confidence 99999999999999999999998766799999999999999999988 678999999999999999999999986
No 5
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=100.00 E-value=5e-36 Score=290.03 Aligned_cols=262 Identities=36% Similarity=0.561 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEecChHHHHHHHHhhhhhcCCCcchhhh
Q 016417 105 CAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFM 184 (390)
Q Consensus 105 ~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid~~~~~~~~~~~~~~~~~~~~~~~l 184 (390)
+|+++|..++++|+|||++|+||+++++++||.+.+ ..++.+.+.++ |+++++|++...++|+....... .+.+
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~~~l~~~~~~~~~-~~~~~v~~~~~-L~~~~id~~~~~~~~~~~~~~~~----~~~~ 74 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPAHSLSDVFEQEIG-HTPTKVTGVEN-LSAVEIDPQAALEEYRAKLVEQI----KGNL 74 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCCCHHHHhCCccC-CCCeeccCCCC-ceEEEcCHHHHHHHHHHHHHHHH----hhhc
Confidence 488999999999999999999999999999999875 45677765565 99999999999999887543211 1111
Q ss_pred cccchhhHHHHhhhhhcccccCCCCCChhHHHHhhc----------------------cceeccccCchHHHHHHHHHHH
Q 016417 185 DGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISK----------------------GHTLRLLSLPDFLDASIGKILK 242 (390)
Q Consensus 185 ~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~----------------------g~tLrlL~lp~~l~~~l~~ll~ 242 (390)
... ...... .+++ +.+||++|++++.+ |||||+|++|+.+.+|++++++
T Consensus 75 ~~~--~~~~~~-----~~~~--~~~PG~~E~~~l~~l~~~~~~~~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~~~~ 145 (284)
T TIGR00345 75 PDG--DMLGDQ-----LEGA--ALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEKFIK 145 (284)
T ss_pred ccc--ccHHHH-----HhcC--CCCCCHHHHHHHHHHHHHHHHhhccCCEEEECCCChHHHHHHHhhHHHHHHHHHHHHH
Confidence 100 001111 1111 24788888876533 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHHHHHHhCCCCcc
Q 016417 243 LREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVK 322 (390)
Q Consensus 243 l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~ 322 (390)
.+.++..+.+.+ .|.. ..+++.+.++.+++++++++++|+||+.|+|++|++|+.+++.++.++++.|+++|+++.
T Consensus 146 ~~~~~~~~~~~~---~~~~-~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~ 221 (284)
T TIGR00345 146 IRSKLGPMLKLF---MGAG-ESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVD 221 (284)
T ss_pred HHHHHHHHHHHh---cCCC-cchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCcHHHHHHHHHHHHhCCCCCC
Confidence 998876654433 3433 457888999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCccCCCCCchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCCCHHHHHHHHHHh
Q 016417 323 RLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDII 388 (390)
Q Consensus 323 gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~G~~~L~~l~~~~ 388 (390)
++|+|++.+... .|++|..+.+.|+++++++++ .|.++|++.+|+++.||+|+++|+.+++.|
T Consensus 222 ~lvvN~v~~~~~-~~~~~~~r~~~q~~~L~~i~~--~~~~~~~~~vp~~~~e~~G~~~L~~l~~~~ 284 (284)
T TIGR00345 222 AVIVNQVLPENA-QDEFCQARWELQQKYLKEIPE--KFADLPVAEVPLQKEEMVGLEALKRLSKTL 284 (284)
T ss_pred EEEEeCCcCCCC-CCHHHHHHHHHHHHHHHHHHH--HhcCCCeEEecCCCCCCCCHHHHHHHHhhC
Confidence 999999998754 599999999999999999998 678999999999999999999999999864
No 6
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1e-23 Score=197.36 Aligned_cols=183 Identities=22% Similarity=0.331 Sum_probs=130.2
Q ss_pred cccchhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhcccC-------CCccccc
Q 016417 76 AVSGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLT-------GGQLVPV 147 (390)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~~~~-------~~~~~~v 147 (390)
.+....+.+.+..++|+|.||||||||||+++|||+.||+.|.+|.++|.|..+ |++.++|.+.. ++.|+
T Consensus 35 ~~~~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv-- 112 (300)
T KOG3022|consen 35 DIPAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPV-- 112 (300)
T ss_pred CcccccccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceee--
Confidence 444556678889999999999999999999999999999999999999999985 99999997643 33333
Q ss_pred cCCCCCeeEEecChHHHHHHHHhhhhhcCCCcchhhhcccchhhHHHHhhhhhccc---ccCCCCCChhH-HHHhhccce
Q 016417 148 EGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGE---LLDTPPPGLDE-AIAISKGHT 223 (390)
Q Consensus 148 ~~~~~~L~a~eid~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~---lid~~pPG~de-~~~l~~g~t 223 (390)
.... ++..+++.--..... +. ..- -.....+.+.+.|.+.+|++ ++.+.|||+.| .+.+..
T Consensus 113 ~~~~-~l~~mS~gfLl~~~~--~~---vIw------RGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~--- 177 (300)
T KOG3022|consen 113 VVNK-NLKLMSMGFLLKPRD--DS---VIW------RGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQ--- 177 (300)
T ss_pred eecC-CeEEEEeeeecCCCC--cc---cee------echHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheee---
Confidence 2222 377777632110000 00 000 01223445777788888765 44445889754 332221
Q ss_pred eccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcch
Q 016417 224 LRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 303 (390)
Q Consensus 224 LrlL~lp~~l~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s 303 (390)
.+. ..++++|||||+..+
T Consensus 178 ------------------------------------------------------------~~~--~~~gAviVTTPQ~vA 195 (300)
T KOG3022|consen 178 ------------------------------------------------------------FLR--ESDGAVIVTTPQEVA 195 (300)
T ss_pred ------------------------------------------------------------ccc--ccCceEEEeCchhhh
Confidence 011 126899999999999
Q ss_pred HHHHHHHHHHHHhCCCCcceEEEcCccCCCCCchHHHH
Q 016417 304 VSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCA 341 (390)
Q Consensus 304 ~~ea~r~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~ 341 (390)
+.+++|.++++++.|||+.|+|.||. .+.|++|.
T Consensus 196 l~Dv~K~i~fc~K~~I~ilGvVENMs----~f~Cp~C~ 229 (300)
T KOG3022|consen 196 LQDVRKEIDFCRKAGIPILGVVENMS----GFVCPKCG 229 (300)
T ss_pred hHHHHhhhhhhhhcCCceEEEEeccc----cccCCCCC
Confidence 99999999999999999999999995 45677664
No 7
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.88 E-value=1.3e-21 Score=182.23 Aligned_cols=83 Identities=29% Similarity=0.496 Sum_probs=74.6
Q ss_pred HHhcCCCCceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCCCCCchHHHHHHHHHHHHHHHhhhhcCccCC
Q 016417 283 ELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSS 362 (390)
Q Consensus 283 ~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~ 362 (390)
+.+.|+..+.+++|++|+.+++.+++++++.++++|+++.++|+|++.+.....|.+|..+.+.|+++|.++.+ .|.+
T Consensus 134 ~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~~~~~~~~~~~~~~q~~~l~~~~~--~~~~ 211 (217)
T cd02035 134 ELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPAEVDDDPFLAARRQIQQKYLAEIEE--LFDD 211 (217)
T ss_pred HHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccCCCHHHHHHHHHHHHHHHHHHH--HcCC
Confidence 44778777899999999999999999999999999999999999999987665689999999999999999988 6777
Q ss_pred CceEE
Q 016417 363 LMLIE 367 (390)
Q Consensus 363 l~i~~ 367 (390)
+|+..
T Consensus 212 ~~~~~ 216 (217)
T cd02035 212 LPIVP 216 (217)
T ss_pred Cceec
Confidence 77764
No 8
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.79 E-value=8.1e-19 Score=156.86 Aligned_cols=166 Identities=25% Similarity=0.306 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEecChHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFR 169 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid~~~~~~~~~ 169 (390)
+|.++|+||||||||+|+|||..+|+.|+||+|||+|++++...++- .+ + . .....+.
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~---~~---------~--~------~~~~l~~-- 58 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW---RG---------P--M------KMGAIKQ-- 58 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH---hC---------c--c------hHHHHHH--
Confidence 47899999999999999999999999999999999999985433320 00 0 0 0000110
Q ss_pred hhhhhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhccceeccccCchHHHHHHHHHHHHHHHHHH
Q 016417 170 NVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLLSLPDFLDASIGKILKLREKIAS 249 (390)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~g~tLrlL~lp~~l~~~l~~ll~l~~~~~~ 249 (390)
..+.+..-.++.++-+.||++.+....
T Consensus 59 ----------------------~~~~~~~~~yD~VIiD~pp~~~~~~~~------------------------------- 85 (169)
T cd02037 59 ----------------------FLTDVDWGELDYLVIDMPPGTGDEHLT------------------------------- 85 (169)
T ss_pred ----------------------HHHHhhcCCCCEEEEeCCCCCcHHHHH-------------------------------
Confidence 011111112333433347765432200
Q ss_pred HHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCc
Q 016417 250 ATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQI 329 (390)
Q Consensus 250 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v 329 (390)
.+.....+.+++|++|+..++.++.++++.+++.++++.|+|+||+
T Consensus 86 ----------------------------------~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~ 131 (169)
T cd02037 86 ----------------------------------LAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMS 131 (169)
T ss_pred ----------------------------------HHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 0100124689999999999999999999999999999999999998
Q ss_pred cCCCCCchHHHHHHHHH-HHHHHHhhhhcCccCCCceEEecC
Q 016417 330 IPPSASDCKFCAMKRKD-QMRALEMIKSDSELSSLMLIEAPL 370 (390)
Q Consensus 330 ~p~~~~~~~~~~~~~~~-q~~~l~~i~~d~~~~~l~i~~vP~ 370 (390)
.+. |.+|+.+... +.+.++++.+ .+....+..+|+
T Consensus 132 ~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ip~ 167 (169)
T cd02037 132 YFV----CPHCGKKIYIFGKGGGEKLAE--ELGVPLLGKIPL 167 (169)
T ss_pred ccc----CCCCCCcccccCCccHHHHHH--HcCCCEEEeccC
Confidence 764 3345444333 4566666765 455556666675
No 9
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.77 E-value=4.5e-18 Score=170.27 Aligned_cols=55 Identities=31% Similarity=0.463 Sum_probs=49.6
Q ss_pred hhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhcc
Q 016417 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQD 138 (390)
Q Consensus 84 ~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~~ 138 (390)
+.+..++|+|+||||||||||+|+|||..||+.|+||+|||+|+++ +++.+||.+
T Consensus 103 ~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~ 158 (369)
T PRK11670 103 VNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAE 158 (369)
T ss_pred CCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCc
Confidence 4456789999999999999999999999999999999999999997 566889864
No 10
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.77 E-value=2.3e-18 Score=165.13 Aligned_cols=170 Identities=23% Similarity=0.267 Sum_probs=111.6
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhcccCCCccccccCCC-------CCeeEE
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEGPD-------FPLFAL 157 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~~~~~~~~~~v~~~~-------~~L~a~ 157 (390)
+..++|+++|||||+||||+|+|||..+|+.|+||+++|+|..+ ++..+||.+...+.+..+.+.. .++..+
T Consensus 55 ~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~l 134 (265)
T COG0489 55 GVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVL 134 (265)
T ss_pred ccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceE
Confidence 36789999999999999999999999999999999999999875 9999999753211221222100 001111
Q ss_pred ecChHHHHHHHHhhhhhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhccceeccccCchHHHHHH
Q 016417 158 EINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLLSLPDFLDASI 237 (390)
Q Consensus 158 eid~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~g~tLrlL~lp~~l~~~l 237 (390)
.+.+- ........+.+.+..+..+.++..+-.++.+|.+.|||..+.-...
T Consensus 135 si~~~-----------~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i------------------ 185 (265)
T COG0489 135 SILPL-----------GPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATV------------------ 185 (265)
T ss_pred EEEec-----------CCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHH------------------
Confidence 11100 0011122333333333334444444335555555688754422000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHHHHHHhC
Q 016417 238 GKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKE 317 (390)
Q Consensus 238 ~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~L~~~ 317 (390)
++ .-.+++++|++|+.++..+++++++++++.
T Consensus 186 -----------------------------------------------~~-~~~~g~viVt~p~~~~~~~v~ka~~~~~~~ 217 (265)
T COG0489 186 -----------------------------------------------LQ-RIPDGVVIVTTPGKTALEDVKKAIDMLEKA 217 (265)
T ss_pred -----------------------------------------------Hh-ccCCeEEEEeCCccchHHHHHHHHHHHHhc
Confidence 00 012389999999999999999999999999
Q ss_pred CCCcceEEEcCccCC
Q 016417 318 NVPVKRLIVNQIIPP 332 (390)
Q Consensus 318 gi~v~gvVvN~v~p~ 332 (390)
+++|.|+|.||....
T Consensus 218 ~~~vlGvv~Nm~~~~ 232 (265)
T COG0489 218 GIPVLGVVENMSYFI 232 (265)
T ss_pred CCceEEEEecCccCc
Confidence 999999999997654
No 11
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.72 E-value=8.8e-18 Score=152.90 Aligned_cols=172 Identities=23% Similarity=0.363 Sum_probs=115.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcccCCCccccccCCCCCeeEEecC--hHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQLVPVEGPDFPLFALEIN--PEKA 164 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid--~~~~ 164 (390)
.++|+++||||||||||.++|++..||+.|+||++||+|.. .+|.-++|++.+- +. +. +.+++-+ ..++
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~Ri---VY----d~-vdVi~g~~~l~QA 73 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRI---VY----DL-VDVIEGEATLNQA 73 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhccccee---ee----ee-hhhhcCccchhhH
Confidence 46899999999999999999999999999999999999998 4999999987541 00 00 1111111 1111
Q ss_pred H---HHHHhhh-hhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhccceeccccCchHHHHHHHHH
Q 016417 165 R---EEFRNVT-QKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLLSLPDFLDASIGKI 240 (390)
Q Consensus 165 ~---~~~~~~~-~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~g~tLrlL~lp~~l~~~l~~l 240 (390)
. +++.... .....+.-++.+...++..+.++|....+++++.+.|-|++.-+...
T Consensus 74 LIkDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A--------------------- 132 (272)
T COG2894 74 LIKDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNA--------------------- 132 (272)
T ss_pred hhccccCCceEecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHhh---------------------
Confidence 1 0011110 01112233555666667777788876667777666676754422000
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHHHHHHhCC--
Q 016417 241 LKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKEN-- 318 (390)
Q Consensus 241 l~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~L~~~g-- 318 (390)
+ .. .+.+++||+||..|++++.|++..|...+
T Consensus 133 -------------~-----------------------------~~----Ad~AiVVtnPEvSsVRDsDRiiGlLesk~~r 166 (272)
T COG2894 133 -------------V-----------------------------YF----ADEAIVVTNPEVSSVRDSDRIIGLLESKSRR 166 (272)
T ss_pred -------------h-----------------------------hc----cceEEEEcCCCccccccchhheeehhcccch
Confidence 0 02 24689999999999999999999999876
Q ss_pred --CCc---ceEEEcCccCCCC
Q 016417 319 --VPV---KRLIVNQIIPPSA 334 (390)
Q Consensus 319 --i~v---~gvVvN~v~p~~~ 334 (390)
..- ..+++||+-|.-.
T Consensus 167 ae~~~~~~~~llvnR~~p~~v 187 (272)
T COG2894 167 AEIGEEPKEHLLLNRYRPEMV 187 (272)
T ss_pred hhcCCcccceEEEEccCHHHh
Confidence 433 7899999877643
No 12
>CHL00175 minD septum-site determining protein; Validated
Probab=99.70 E-value=1.1e-16 Score=154.35 Aligned_cols=53 Identities=28% Similarity=0.415 Sum_probs=49.0
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcc
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQD 138 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~ 138 (390)
+..++|+|++|||||||||+|+|||..|++.|++|++||+|++ +++..+||.+
T Consensus 13 ~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~ 66 (281)
T CHL00175 13 TMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLE 66 (281)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCC
Confidence 3567999999999999999999999999999999999999998 6888888865
No 13
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.66 E-value=3.5e-16 Score=144.23 Aligned_cols=190 Identities=18% Similarity=0.234 Sum_probs=116.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCC-CCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEecChHHHHHHHHh
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNG-HPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRN 170 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g-~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid~~~~~~~~~~ 170 (390)
+.++|||||||||+|+.|+..+..+| ++||+||+||..+|+..||.+.. +.++.+ -....+ +
T Consensus 3 IaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~---~~~lg~-----------~~e~~~---k 65 (255)
T COG3640 3 IAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEP---MKYLGG-----------KRELLK---K 65 (255)
T ss_pred EEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCC---Cccccc-----------HHHHHH---H
Confidence 45569999999999999877777765 99999999999999999998753 122211 111122 2
Q ss_pred hhhhcCCCcchhhhc-ccchhhHHHHhhhhhcccccCCCCCChhHHHHhhccceeccccCch--HHHHHH--HHHHHHHH
Q 016417 171 VTQKDGGTGVKDFMD-GMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLLSLPD--FLDASI--GKILKLRE 245 (390)
Q Consensus 171 ~~~~~~~~~~~~~l~-~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~g~tLrlL~lp~--~l~~~l--~~ll~l~~ 245 (390)
......+.....++. ....+.+. +|+........|..++-++ .-+|++ +.++ |+
T Consensus 66 ~~~a~~~~~~~~~fk~~~~~~di~-------------------~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~all--R~ 124 (255)
T COG3640 66 RTGAEPGGPPGEMFKENPLVSDLP-------------------DEYLVENGDIDLLVMGKIEEGGEGCACPMNALL--RR 124 (255)
T ss_pred HhccCCCCCcccccccCcchhhhh-------------------HHHhhhcCCccEEEeccccCCCCcccchHHHHH--HH
Confidence 111111111111221 00111111 2233333334455556666 333332 2222 22
Q ss_pred HHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEE
Q 016417 246 KIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLI 325 (390)
Q Consensus 246 ~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvV 325 (390)
-+..+.-. ..+.-.-|..++++|+.++..+ ..+.+++|+.|...++.-++|+.+..++.|+.-..+|
T Consensus 125 ~l~~l~~~-----~~e~VivDtEAGiEHfgRg~~~--------~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V 191 (255)
T COG3640 125 LLRHLILN-----RYEVVIVDTEAGIEHFGRGTIE--------GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVV 191 (255)
T ss_pred HHHHHhcc-----cCcEEEEecccchhhhcccccc--------CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEE
Confidence 12221110 0011245677899999998643 3578999999999999999999999999999989999
Q ss_pred EcCccCC
Q 016417 326 VNQIIPP 332 (390)
Q Consensus 326 vN~v~p~ 332 (390)
+||+-..
T Consensus 192 ~NKv~e~ 198 (255)
T COG3640 192 LNKVDEE 198 (255)
T ss_pred Eeeccch
Confidence 9998654
No 14
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.66 E-value=1.4e-15 Score=146.14 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=47.4
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhcc
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQD 138 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~~ 138 (390)
+..++|.|+|+|||+||||+|.|||..+|+.|+||++||+|++. ++...|+.+
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~ 154 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLS 154 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCC
Confidence 46789999999999999999999999999999999999999875 667777654
No 15
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.66 E-value=1.7e-15 Score=144.63 Aligned_cols=161 Identities=27% Similarity=0.370 Sum_probs=102.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHH-HHHHHHCCCCeEEEecCCCC-CCchHhhcccCCCccccc-c-----------CCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASL-AVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPV-E-----------GPDFP 153 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~l-a~~~a~~g~~vll~d~D~~~-~l~~~~g~~~~~~~~~~v-~-----------~~~~~ 153 (390)
.++|.+.||||||||||+++|+ +..++.+|++|+++|+|+.. +++..||.+........+ . +...+
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence 4789999999999999999999 56566667777999999985 999999986532101000 0 00011
Q ss_pred eeEEecChHHHHHHHHhhhhhcCCCcchhhh--cccchhhHHHHhhhhhcccccCCCCCChhHHHHhhccceeccccCch
Q 016417 154 LFALEINPEKAREEFRNVTQKDGGTGVKDFM--DGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLLSLPD 231 (390)
Q Consensus 154 L~a~eid~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~g~tLrlL~lp~ 231 (390)
++++.-+ ....++. ....+..+...+.......++|+ +||+..-.
T Consensus 82 l~vipg~-----------------~~~~~~~~~~~~~~~~~~~~l~~~~D~iliD~-~aGl~~~~--------------- 128 (262)
T COG0455 82 LYVLPGG-----------------SGLEDLAKLDPEDLEDVIKELEELYDYILIDT-GAGLSRDT--------------- 128 (262)
T ss_pred EEEeeCC-----------------CChHHHhhcCHHHHHHHHHHHHhcCCEEEEeC-CCCccHHH---------------
Confidence 2222211 1112211 11122334444444442334444 56642211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHH
Q 016417 232 FLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLS 311 (390)
Q Consensus 232 ~l~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~ 311 (390)
+..++. .+.+++|++||..++.++..++
T Consensus 129 -------------------------------------------------~~~~~~---sd~~viVt~pe~~si~~A~~~i 156 (262)
T COG0455 129 -------------------------------------------------LSFILS---SDELVIVTTPEPTSITDAYKTI 156 (262)
T ss_pred -------------------------------------------------HHHHHh---cCcEEEEeCCCcchHHHHHHHH
Confidence 000122 2579999999999999999999
Q ss_pred HHHHhCCCCcce--EEEcCccCCC
Q 016417 312 ESLKKENVPVKR--LIVNQIIPPS 333 (390)
Q Consensus 312 ~~L~~~gi~v~g--vVvN~v~p~~ 333 (390)
+.+...|++..+ +|+|++-+..
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~ 180 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTK 180 (262)
T ss_pred HHHHHcCCccccceEEEEeccccc
Confidence 999999999988 9999997443
No 16
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.65 E-value=2.1e-15 Score=142.24 Aligned_cols=50 Identities=32% Similarity=0.468 Sum_probs=46.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQD 138 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~ 138 (390)
++|.++++||||||||+|+|||..|+++|++|++||+|++ ++++.+||.+
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~ 51 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGME 51 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCC
Confidence 4799999999999999999999999999999999999996 5888888865
No 17
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.65 E-value=3.7e-15 Score=137.05 Aligned_cols=51 Identities=29% Similarity=0.447 Sum_probs=45.3
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQ 137 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~ 137 (390)
..++|.|+|+|||+||||++++||..+++.|+||++||+|++. ++..+++.
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~ 67 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKS 67 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCC
Confidence 3789999999999999999999999999999999999999986 45555654
No 18
>PHA02518 ParA-like protein; Provisional
Probab=99.65 E-value=1.8e-15 Score=138.95 Aligned_cols=50 Identities=36% Similarity=0.489 Sum_probs=47.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~ 138 (390)
++|.|++.||||||||+|+|+|..|+++|++|++||+||+.++..|++..
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~ 50 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAR 50 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhc
Confidence 47899999999999999999999999999999999999999999998753
No 19
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.61 E-value=8.5e-15 Score=137.95 Aligned_cols=51 Identities=37% Similarity=0.554 Sum_probs=47.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhccc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~ 139 (390)
++|.|+|+||||||||+|+|+|..+|++|+||++||+|++++++..||.+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~ 52 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDW 52 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCC
Confidence 579999999999999999999999999999999999999999888888653
No 20
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.61 E-value=7.9e-15 Score=135.92 Aligned_cols=45 Identities=29% Similarity=0.536 Sum_probs=41.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHh
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF 135 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~ 135 (390)
+|+|+ |||||||||+++|||..||+.|+|||+||+||+.+...++
T Consensus 2 ~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~ 46 (212)
T cd02117 2 QIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLL 46 (212)
T ss_pred EEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccc
Confidence 56777 7999999999999999999999999999999998777666
No 21
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.61 E-value=7.7e-15 Score=139.06 Aligned_cols=50 Identities=30% Similarity=0.486 Sum_probs=46.8
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQD 138 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~ 138 (390)
++|.|+|+||||||||+|+|+|..+++.|+||++||+|++ ++++.+||.+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~ 52 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLE 52 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCC
Confidence 6899999999999999999999999999999999999997 6888888764
No 22
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.61 E-value=1.1e-14 Score=134.50 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCCC-CCchHhhccc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH-SLSDSFAQDL 139 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~~-~l~~~~g~~~ 139 (390)
..++|.|+|+|||+||||+|++||+.+++ .|+|||+||+|++. +++..++.+.
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~ 88 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEA 88 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCC
Confidence 46789999999999999999999999997 69999999999986 7888887653
No 23
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.60 E-value=3.3e-15 Score=143.66 Aligned_cols=46 Identities=28% Similarity=0.567 Sum_probs=43.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHh
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF 135 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~ 135 (390)
++|.|+ |||||||||+++|||..||++|+||++||+||+++...++
T Consensus 2 ~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l 47 (273)
T PRK13232 2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRML 47 (273)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhh
Confidence 578888 9999999999999999999999999999999999888776
No 24
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.60 E-value=4.5e-15 Score=144.66 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=41.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
+++.++|||||||||+|+|||..||++|+|||++|+||+++...+|.
T Consensus 7 ~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~ 53 (296)
T PRK13236 7 RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLML 53 (296)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhc
Confidence 44444999999999999999999999999999999999997777664
No 25
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.59 E-value=1e-14 Score=131.31 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=42.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcccC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLT 140 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~~~ 140 (390)
+|.++|||||+||||+|+|||..+ ++|+|+|+|++ ++++.+||.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~ 48 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIE 48 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcc
Confidence 478999999999999999999999 79999999998 588888987643
No 26
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.59 E-value=2.4e-14 Score=127.84 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=43.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcc
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQD 138 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~ 138 (390)
+|.++++|||+||||+|+|||.+++++|++|+++|+|++ +++..+++.+
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~ 50 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLE 50 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhcccc
Confidence 478999999999999999999999999999999999997 5777776643
No 27
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.58 E-value=5.7e-15 Score=141.15 Aligned_cols=47 Identities=28% Similarity=0.558 Sum_probs=43.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
++|+|+ |||||||||+|+|||..|+++|+||++||+|||.++..+++
T Consensus 2 ~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~ 48 (270)
T cd02040 2 RQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLL 48 (270)
T ss_pred cEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhc
Confidence 467777 89999999999999999999999999999999998888775
No 28
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.58 E-value=6.3e-15 Score=143.22 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=41.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
+.+.|||||||||+++|||..||+.|+|||+||+|||+++..+++
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~ 47 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLT 47 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccccccc
Confidence 344579999999999999999999999999999999999998873
No 29
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.57 E-value=4.3e-15 Score=142.33 Aligned_cols=46 Identities=33% Similarity=0.604 Sum_probs=42.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
+|++. |||||||||+|+|||..||++|+|||+||+||+.+++.+|+
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~ 47 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLT 47 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceec
Confidence 46666 99999999999999999999999999999999999998886
No 30
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.57 E-value=7.3e-15 Score=141.31 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=43.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCCCCCchH-hhc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAHSLSDS-FAQ 137 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~~~l~~~-~g~ 137 (390)
++|.|+ |||||||||+|.|||..||+ .|+|||+||+|||+++..+ +|.
T Consensus 3 ~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~ 52 (275)
T PRK13233 3 RKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGG 52 (275)
T ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCC
Confidence 678888 99999999999999999998 5999999999999998886 453
No 31
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.57 E-value=4.7e-15 Score=142.68 Aligned_cols=47 Identities=30% Similarity=0.520 Sum_probs=43.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
++|.|+ |||||||||+|+|||..||+.|+|||+||+|||+++.++++
T Consensus 2 ~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~ 48 (274)
T PRK13235 2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLL 48 (274)
T ss_pred CEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccccccccc
Confidence 577888 89999999999999999999999999999999999888873
No 32
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.56 E-value=5e-14 Score=134.98 Aligned_cols=52 Identities=33% Similarity=0.481 Sum_probs=47.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhccc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDL 139 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~~ 139 (390)
.++|.|+|+||||||||+|+|||..++++|++|++||+|++ +++..+||.+.
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~ 54 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCER 54 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCc
Confidence 47899999999999999999999999999999999999997 68888888653
No 33
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.55 E-value=2.6e-14 Score=137.47 Aligned_cols=46 Identities=26% Similarity=0.537 Sum_probs=41.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
.|+++ |||||||||+|.|||..|+++|+||++||+|||.++..+++
T Consensus 2 ~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~ 47 (275)
T TIGR01287 2 QIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLL 47 (275)
T ss_pred eeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCcccccc
Confidence 45565 89999999999999999999999999999999998887764
No 34
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.55 E-value=3e-14 Score=136.64 Aligned_cols=48 Identities=29% Similarity=0.539 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~ 137 (390)
++|+|. |||||||||+++|||..||++|+|||+||+||+.+++.+++.
T Consensus 3 ~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~ 50 (270)
T PRK13185 3 LVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTG 50 (270)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcC
Confidence 567776 899999999999999999999999999999999999998863
No 35
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.52 E-value=6.2e-14 Score=134.28 Aligned_cols=47 Identities=30% Similarity=0.577 Sum_probs=42.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhc
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~ 137 (390)
+|+|+ |||||||||+|+|||+.||++|+|||+||+||+.++..+++.
T Consensus 2 ~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~ 48 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTG 48 (267)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccC
Confidence 46666 899999999999999999999999999999999998888863
No 36
>PRK10037 cell division protein; Provisional
Probab=99.51 E-value=1e-13 Score=131.77 Aligned_cols=50 Identities=36% Similarity=0.433 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~ 138 (390)
++|.|.+.||||||||+|+|||..|+++|+|||+||+|||.+++.+||.+
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~ 51 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVD 51 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCC
Confidence 58999999999999999999999999999999999999999999888864
No 37
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.50 E-value=1.8e-13 Score=149.28 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=48.9
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhccc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDL 139 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~~ 139 (390)
..++|.|+|.|||+||||+|+|||..+|+.|+||||||+|++ ++++.+||.+.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~ 598 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVARE 598 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcc
Confidence 468999999999999999999999999999999999999998 58999998653
No 38
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.49 E-value=5.6e-13 Score=135.27 Aligned_cols=51 Identities=35% Similarity=0.343 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~ 138 (390)
.++|.|++.||||||||+|+|||..||+.|+|||+||+|||++++.+||..
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~ 171 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVL 171 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCC
Confidence 378999999999999999999999999999999999999999999999864
No 39
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.49 E-value=1.4e-13 Score=132.86 Aligned_cols=48 Identities=33% Similarity=0.665 Sum_probs=44.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~ 137 (390)
++|++. |||||||||+|+|||..||++|+|||+||+||+++++.+|+.
T Consensus 2 ~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~ 49 (279)
T PRK13230 2 RKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVG 49 (279)
T ss_pred cEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccC
Confidence 456666 999999999999999999999999999999999999998863
No 40
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.47 E-value=7.2e-14 Score=133.61 Aligned_cols=47 Identities=28% Similarity=0.608 Sum_probs=42.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
.++|+++ |||||||||+|+|||..|++.| |||+||+||+.++...++
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~ 48 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLC 48 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhh
Confidence 3578888 7999999999999999999999 999999999998887654
No 41
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.47 E-value=6.6e-13 Score=124.96 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~ 138 (390)
++|.+++.||||||||++.|||..++++|++|++||+|||.++..|++..
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~ 51 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENA 51 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhh
Confidence 58999999999999999999999999999999999999999999998743
No 42
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.47 E-value=5.6e-13 Score=131.26 Aligned_cols=53 Identities=32% Similarity=0.454 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhccc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDL 139 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~~~ 139 (390)
..++|.|+++||||||||+|+|||+.++++|++|++||+|++. ++..+||.+.
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~ 145 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAED 145 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCC
Confidence 4789999999999999999999999999999999999999996 5677787653
No 43
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.47 E-value=2.7e-13 Score=132.10 Aligned_cols=48 Identities=25% Similarity=0.466 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
.++|.|. |||||||||+++|||..|++.|+|||+||+||+++....++
T Consensus 4 ~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~ 51 (295)
T PRK13234 4 LRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLIL 51 (295)
T ss_pred ceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccc
Confidence 3567776 99999999999999999999999999999999987777664
No 44
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.47 E-value=2.7e-13 Score=122.61 Aligned_cols=46 Identities=37% Similarity=0.525 Sum_probs=42.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
|+|+++||||||||+|++||..++++|++|+++|+|++.+...++.
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~ 46 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILF 46 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHT
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHh
Confidence 6899999999999999999999999999999999999997777765
No 45
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.47 E-value=1.4e-12 Score=131.67 Aligned_cols=52 Identities=37% Similarity=0.400 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~ 138 (390)
..++|+|++.||||||||+|+|||..|++.|+|||+||+||+.+++.+||..
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls~~~g~~ 154 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQ 154 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHcCCC
Confidence 3478999999999999999999999999999999999999999999999863
No 46
>PRK11519 tyrosine kinase; Provisional
Probab=99.46 E-value=7.1e-13 Score=143.67 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=107.5
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhcccCCCccccccC-----------CCCCe
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEG-----------PDFPL 154 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~~~~~~~~~~v~~-----------~~~~L 154 (390)
..++|+|+|.+||+||||+|.|||..+|+.|+||||||+|++. +++..||.+...+-...+.+ ...+|
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 5689999999999999999999999999999999999999885 78888876532211000000 00112
Q ss_pred eEEecChHHHHHHHHhhhhhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhccceeccccCchHHH
Q 016417 155 FALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLLSLPDFLD 234 (390)
Q Consensus 155 ~a~eid~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~g~tLrlL~lp~~l~ 234 (390)
+++... .....+.+++.+..+..+.+.+..-+...++|+||.. ...+..-
T Consensus 605 ~~lp~g--------------~~~~~~~ell~s~~~~~ll~~l~~~yD~ViiDtpP~~----------------~v~Da~~ 654 (719)
T PRK11519 605 DLIPRG--------------QVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPIL----------------AVTDAAI 654 (719)
T ss_pred EEEeCC--------------CCCCCHHHHhhHHHHHHHHHHHHhcCCEEEEeCCCcc----------------cchHHHH
Confidence 222211 1111233444444444455555543333456664421 1111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHHHHH
Q 016417 235 ASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSESL 314 (390)
Q Consensus 235 ~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~L 314 (390)
+ .+..+.+++|+.++.+...++..+++.+
T Consensus 655 --------------------------------------------------l-~~~~d~~l~Vvr~~~t~~~~~~~~~~~l 683 (719)
T PRK11519 655 --------------------------------------------------V-GRHVGTTLMVARYAVNTLKEVETSLSRF 683 (719)
T ss_pred --------------------------------------------------H-HHHCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 0 0013578999999999999999999999
Q ss_pred HhCCCCcceEEEcCccCC
Q 016417 315 KKENVPVKRLIVNQIIPP 332 (390)
Q Consensus 315 ~~~gi~v~gvVvN~v~p~ 332 (390)
++.|+++.|+|+|++...
T Consensus 684 ~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 684 EQNGIPVKGVILNSIFRR 701 (719)
T ss_pred HhCCCCeEEEEEeCCccC
Confidence 999999999999999543
No 47
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.46 E-value=1.7e-13 Score=134.95 Aligned_cols=50 Identities=30% Similarity=0.463 Sum_probs=43.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhcc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQD 138 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~~ 138 (390)
.++|++ .||||+||||+++|||.+++++|+||++||+|+++ ++..+||..
T Consensus 31 ~~ii~v-~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~ 81 (329)
T cd02033 31 TQIIAI-YGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGK 81 (329)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhcccc
Confidence 344555 48999999999999999999999999999999987 888888854
No 48
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.45 E-value=9.1e-13 Score=128.44 Aligned_cols=46 Identities=30% Similarity=0.489 Sum_probs=42.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHh
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF 135 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~ 135 (390)
++|+|+ |||||||||+|+|||..||++|+|||+||+||+.+...++
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l 46 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLL 46 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchh
Confidence 467777 9999999999999999999999999999999998777666
No 49
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.45 E-value=1e-12 Score=108.82 Aligned_cols=41 Identities=41% Similarity=0.600 Sum_probs=38.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAHS 130 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~~~~ 130 (390)
+++++++|||+||||++.+||..+++. |++|+++|+||+.+
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~ 42 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG 42 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC
Confidence 378899999999999999999999998 99999999999864
No 50
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.43 E-value=1.7e-12 Score=140.90 Aligned_cols=167 Identities=17% Similarity=0.155 Sum_probs=106.8
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhcccCCCccccccCC-----------CCC
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDLTGGQLVPVEGP-----------DFP 153 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~~~~~~~~~~v~~~-----------~~~ 153 (390)
...++|+|+|.+||+||||+|.|||..+|..|+|||+||+|++. ++..+|+.+...+-...+.+. ..+
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 608 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 608 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCC
Confidence 35789999999999999999999999999999999999999985 777788754321100000000 001
Q ss_pred eeEEecChHHHHHHHHhhhhhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhccceeccccCchHH
Q 016417 154 LFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLLSLPDFL 233 (390)
Q Consensus 154 L~a~eid~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~g~tLrlL~lp~~l 233 (390)
++++...+ ....+.+++.+..+..+.+.+..-+...+||+ ||. +..++..
T Consensus 609 l~vl~~g~--------------~~~~p~ell~~~~~~~ll~~l~~~yD~IIIDt-PP~---------------~~~~Da~ 658 (726)
T PRK09841 609 FDVITRGQ--------------VPPNPSELLMRDRMRQLLEWANDHYDLVIVDT-PPM---------------LAVSDAA 658 (726)
T ss_pred EEEEeCCC--------------CCCCHHHHhCcHHHHHHHHHHHhcCCEEEEeC-CCc---------------cccchHH
Confidence 22222110 11122333333334444444444333345665 442 1221110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHHHH
Q 016417 234 DASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSES 313 (390)
Q Consensus 234 ~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~ 313 (390)
- +. +..+++++|+.++.++..++.+.++.
T Consensus 659 ~--------------------------------------------------la-~~ad~~llVvr~~~t~~~~~~~~~~~ 687 (726)
T PRK09841 659 V--------------------------------------------------VG-RSVGTSLLVARFGLNTAKEVSLSMQR 687 (726)
T ss_pred H--------------------------------------------------HH-HhCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 0 00 01357899999999999999999999
Q ss_pred HHhCCCCcceEEEcCccCCC
Q 016417 314 LKKENVPVKRLIVNQIIPPS 333 (390)
Q Consensus 314 L~~~gi~v~gvVvN~v~p~~ 333 (390)
|++.|+++.|+|+|++.+..
T Consensus 688 l~~~~~~~~G~VlN~~~~~~ 707 (726)
T PRK09841 688 LEQAGVNIKGAILNGVIKRA 707 (726)
T ss_pred HHhCCCceEEEEEeCcccCc
Confidence 99999999999999986543
No 51
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.42 E-value=2.1e-12 Score=123.04 Aligned_cols=53 Identities=32% Similarity=0.459 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecCCCCCCchHhhcccC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPAHSLSDSFAQDLT 140 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D~~~~l~~~~g~~~~ 140 (390)
.++|.|++-||||||||+|.|||..|| ..|+|||+||.|||++++.++|.+..
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~ 55 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPD 55 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCcc
Confidence 468999999999999999999999999 66799999999999999999997543
No 52
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.38 E-value=4.7e-13 Score=125.99 Aligned_cols=51 Identities=27% Similarity=0.375 Sum_probs=45.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcccC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLT 140 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~~~ 140 (390)
++++++|||||+||||+|+|+|..|+.. ++++|+|+|-. ++++.+|+.+..
T Consensus 2 m~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~ 53 (284)
T COG1149 2 MQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVL 53 (284)
T ss_pred cEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccchh
Confidence 5799999999999999999999988877 89999999964 699988887653
No 53
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.37 E-value=1e-11 Score=125.20 Aligned_cols=51 Identities=31% Similarity=0.298 Sum_probs=47.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec-CCCCCCchHhhcc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST-DPAHSLSDSFAQD 138 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~-D~~~~l~~~~g~~ 138 (390)
.++|.|++.||||||||++++||..||.+|+|||+||+ |||.+++.+||..
T Consensus 106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~ 157 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYV 157 (387)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcC
Confidence 57899999999999999999999999999999999996 9999999998763
No 54
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.37 E-value=2.5e-11 Score=122.57 Aligned_cols=52 Identities=31% Similarity=0.241 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec-CCCCCCchHhhcc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST-DPAHSLSDSFAQD 138 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~-D~~~~l~~~~g~~ 138 (390)
..++|.|++.||||||||+|+|||..||.+|+|||+||+ |||.+++.+||..
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~ 157 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWV 157 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcC
Confidence 357899999999999999999999999999999999996 9999999988753
No 55
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.35 E-value=2.5e-12 Score=121.12 Aligned_cols=52 Identities=35% Similarity=0.489 Sum_probs=49.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~ 140 (390)
++|++.|-||||||||+++|||+.|++.|++|++||.||+..|.-.||.+..
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~ 53 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLD 53 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCc
Confidence 6899999999999999999999999999999999999999999999998764
No 56
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.32 E-value=1.8e-11 Score=106.18 Aligned_cols=40 Identities=38% Similarity=0.539 Sum_probs=37.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
++.++++|||+||||++.++|..++++|.+|+++|+|++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~ 40 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL 40 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 3788999999999999999999999999999999999854
No 57
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.25 E-value=1.6e-10 Score=107.55 Aligned_cols=50 Identities=28% Similarity=0.430 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~ 138 (390)
++|.+.|.|||+||||.+..||..++++|.+|.+||+||+.++..|-...
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a 51 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENA 51 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhc
Confidence 57999999999999999999999999999999999999999999996643
No 58
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.22 E-value=1e-10 Score=95.76 Aligned_cols=39 Identities=38% Similarity=0.593 Sum_probs=37.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
++.+.+.|||+||||+|.++|..++++|.+|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 378899999999999999999999999999999999987
No 59
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.14 E-value=2.1e-09 Score=101.38 Aligned_cols=47 Identities=36% Similarity=0.551 Sum_probs=41.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC-CchH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS-LSDS 134 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~-l~~~ 134 (390)
.+++++.+|||||||||+|+++|..+++.|.+|+++|+||+++ +..+
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~ 49 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGY 49 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhH
Confidence 4688899999999999999999999999999999999999874 4333
No 60
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.12 E-value=2.2e-11 Score=115.08 Aligned_cols=46 Identities=28% Similarity=0.484 Sum_probs=38.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc-hHhhc
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS-DSFAQ 137 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~-~~~g~ 137 (390)
+.+.||||.||||+++|++.+||+.|+||+.|.+||.+... .+++.
T Consensus 3 IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g 49 (273)
T PF00142_consen 3 IAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGG 49 (273)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTT
T ss_pred EEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCC
Confidence 34459999999999999999999999999999999998555 55654
No 61
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.09 E-value=7.9e-11 Score=110.34 Aligned_cols=50 Identities=32% Similarity=0.408 Sum_probs=41.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQD 138 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~ 138 (390)
++|++.||||||||||+|.|+|.+|++.|++|.++|+|.+ +|++.+++..
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr 51 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENR 51 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHH
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhcc
Confidence 4799999999999999999999999999999999999985 6999999854
No 62
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=98.74 E-value=4.3e-09 Score=82.39 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=37.4
Q ss_pred CceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCCCCCchHHHHH
Q 016417 290 STEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAM 342 (390)
Q Consensus 290 ~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~~ 342 (390)
.+++++||||+.++..+++|.++++++.++|+.|+|.||. ...|+.|..
T Consensus 25 ~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs----~~~Cp~Cg~ 73 (81)
T PF10609_consen 25 IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMS----YFVCPHCGE 73 (81)
T ss_dssp -SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-----EEE-TTT--
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCC----ccCCCCCCC
Confidence 3689999999999999999999999999999999999994 456887764
No 63
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=98.72 E-value=4.6e-08 Score=90.54 Aligned_cols=46 Identities=30% Similarity=0.511 Sum_probs=39.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc-hHhh
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS-DSFA 136 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~-~~~g 136 (390)
+|+ +-||||-||||+++|++.++|..|++|+++-+||.+... .++|
T Consensus 3 ~iA-iYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llg 49 (278)
T COG1348 3 QIA-IYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLG 49 (278)
T ss_pred eEE-EecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhC
Confidence 344 459999999999999999999999999999999998444 4454
No 64
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.69 E-value=4e-07 Score=87.83 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.++++.|++|+||||+++++|..+++.|++|+++|+|+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 3444449999999999999999999999999999999854
No 65
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.65 E-value=4e-08 Score=82.77 Aligned_cols=47 Identities=40% Similarity=0.708 Sum_probs=40.9
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhccc
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~ 139 (390)
+++.||||+||||++.++|..++++|++|+++|+|| .++...++...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~-~~~~~~~~~~~ 48 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP-DDLPERLSVEV 48 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc-hhhHHHHhhcc
Confidence 467799999999999999999999999999999999 66666666543
No 66
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.62 E-value=3.2e-07 Score=80.56 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=38.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC--CchHhh
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS--LSDSFA 136 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~--l~~~~g 136 (390)
+.+.||||+||||++.+++..+...|.+|+++++|++.+ +...++
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~ 48 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILG 48 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhc
Confidence 456699999999999999999999999999999998753 344454
No 67
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.60 E-value=2.9e-07 Score=72.80 Aligned_cols=33 Identities=45% Similarity=0.740 Sum_probs=31.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
++++||+|+||||++.++|..+++.|++|+++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 567799999999999999999999999999999
No 68
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=98.58 E-value=6.2e-07 Score=88.72 Aligned_cols=55 Identities=33% Similarity=0.397 Sum_probs=46.4
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCCC-CCCchHhhcccC
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA-HSLSDSFAQDLT 140 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~~-~~l~~~~g~~~~ 140 (390)
...+.+.|++.|||+|-||+|.|+|+.++.. +..|+|+|.|-+ ++-..+|+++..
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a 158 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPA 158 (366)
T ss_pred hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCch
Confidence 3468999999999999999999999999874 889999999966 466677776543
No 69
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.57 E-value=1.6e-06 Score=77.42 Aligned_cols=39 Identities=38% Similarity=0.543 Sum_probs=36.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
++++.|++|+||||++.++|..+++.|.+|+++|+|+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 456679999999999999999999999999999999875
No 70
>PRK10867 signal recognition particle protein; Provisional
Probab=98.49 E-value=1.9e-06 Score=88.07 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=39.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCCCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAHSL 131 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~~~~l 131 (390)
...++++.|.+|+||||++++||..++++ |++|++||+|++.+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 34677777999999999999999999999 999999999988643
No 71
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=98.47 E-value=9.1e-07 Score=78.51 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=34.6
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEc
Q 016417 292 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVN 327 (390)
Q Consensus 292 ~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN 327 (390)
.+++|+.+....+.++....+.|++.|+++.|+|+|
T Consensus 131 ~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 131 PVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 489999999999999999999999999999999998
No 72
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.44 E-value=8.3e-06 Score=80.42 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
..++.+.|.+|+||||++++||..++..|++|+++|+|++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence 345556699999999999999999999999999999998653
No 73
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=98.42 E-value=3.3e-07 Score=80.14 Aligned_cols=51 Identities=33% Similarity=0.412 Sum_probs=42.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhccc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQDL 139 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~~~ 139 (390)
|.|.|+|.+||+||||+|.++|..+|+.|++|++||+|... ++...++.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~ 52 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEP 52 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccccccccc
Confidence 57889999999999999999999999999999999999875 6777776543
No 74
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.40 E-value=3.8e-06 Score=85.84 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=38.6
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecCCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPAHS 130 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D~~~~ 130 (390)
...++++.|.+|+||||++++||..+. +.|++|+++|+|++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 457888899999999999999999987 6899999999998764
No 75
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.33 E-value=1e-05 Score=82.55 Aligned_cols=47 Identities=26% Similarity=0.378 Sum_probs=40.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHh
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSF 135 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~ 135 (390)
..++++.|.+|+||||+++.||..+.++|++|+++++|++. +..+++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQL 147 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQL 147 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHH
Confidence 46777789999999999999999999999999999999986 333444
No 76
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.29 E-value=6.5e-06 Score=84.37 Aligned_cols=42 Identities=36% Similarity=0.406 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
..++++.|.+|+||||+++.||..+.+.|++|+++++|....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 356666799999999999999999999999999999998753
No 77
>PRK13768 GTPase; Provisional
Probab=98.24 E-value=1.6e-06 Score=82.79 Aligned_cols=41 Identities=27% Similarity=0.371 Sum_probs=37.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
.++++.|+||+||||++.+++..++..|++|+++|.||+.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~ 43 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVE 43 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccc
Confidence 57778899999999999999999999999999999999753
No 78
>PRK06526 transposase; Provisional
Probab=98.18 E-value=1.3e-06 Score=83.49 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=67.8
Q ss_pred hhccchhhhcccccCCCCCCCCccccccccccccccCCccccccccCccccccchhhhhhcCCcEEEEEcCCCCCcHHHH
Q 016417 26 KRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSC 105 (390)
Q Consensus 26 ~r~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gkgGvGKtt~ 105 (390)
.|+.+++++....+.+|..+. +.+|++...+..++....... .+ +|+.+..+ +++.|++|+|||++
T Consensus 49 ~R~~~~~~~~lk~a~~p~~~~----le~fd~~~~~~~~~~~~~~l~-------~~-~fi~~~~n--lll~Gp~GtGKThL 114 (254)
T PRK06526 49 ARESHGGEGRIRAARFPARKS----LEEFDFDHQRSLKRDTIAHLG-------TL-DFVTGKEN--VVFLGPPGTGKTHL 114 (254)
T ss_pred HHHHHHHHHHHHhCCCCCCCC----hhhccCccCCCcchHHHHHHh-------cC-chhhcCce--EEEEeCCCCchHHH
Confidence 899999999999999999877 889998887766655444332 22 35655444 45559999999999
Q ss_pred HHHHHHHHHHCCCCeEEEec
Q 016417 106 AASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 106 a~~la~~~a~~g~~vll~d~ 125 (390)
|.+++..+.+.|++|+++++
T Consensus 115 a~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 115 AIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred HHHHHHHHHHCCCchhhhhH
Confidence 99999999999999988655
No 79
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.17 E-value=3e-05 Score=66.82 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=38.0
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCC
Q 016417 292 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 332 (390)
Q Consensus 292 ~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~ 332 (390)
.+++|++|+.-++.++...++.++..|+++.++|.|+..+.
T Consensus 70 ~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~ 110 (134)
T cd03109 70 PAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEK 110 (134)
T ss_pred CEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCc
Confidence 38999999999999999999999999999999999997654
No 80
>PRK08181 transposase; Validated
Probab=98.15 E-value=2.4e-06 Score=82.31 Aligned_cols=87 Identities=24% Similarity=0.239 Sum_probs=71.5
Q ss_pred hhccchhhhcccccCCCCCCCCccccccccccccccCCccccccccCccccccchhhhhhcCCcEEEEEcCCCCCcHHHH
Q 016417 26 KRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSC 105 (390)
Q Consensus 26 ~r~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gkgGvGKtt~ 105 (390)
.|+++++.+....+.+|..+. +.+|++...+..++.+..... .+++|+....+ +++.|..|+|||++
T Consensus 56 ~R~~~~~~r~lk~A~~p~~~t----le~fd~~~~~~~~~~~~~~L~-------~~~~~~~~~~n--lll~Gp~GtGKTHL 122 (269)
T PRK08181 56 ERARRRIERHLAEAHLPPGKT----LDSFDFEAVPMVSKAQVMAIA-------AGDSWLAKGAN--LLLFGPPGGGKSHL 122 (269)
T ss_pred HHHHHHHHHHHHHCCCCCCCC----HhhCCccCCCCCCHHHHHHHH-------HHHHHHhcCce--EEEEecCCCcHHHH
Confidence 889999999999999998776 889998887777666655444 45567765444 55569999999999
Q ss_pred HHHHHHHHHHCCCCeEEEec
Q 016417 106 AASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 106 a~~la~~~a~~g~~vll~d~ 125 (390)
+.++|..+.++|++|+.+++
T Consensus 123 a~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 123 AAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred HHHHHHHHHHcCCceeeeeH
Confidence 99999999999999999886
No 81
>PRK09183 transposase/IS protein; Provisional
Probab=98.06 E-value=5.2e-06 Score=79.54 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=68.1
Q ss_pred hhccchhhhcccccCCCCCCCCccccccccccccccCCccccccccCccccccchhhhhhcCCcEEEEEcCCCCCcHHHH
Q 016417 26 KRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSC 105 (390)
Q Consensus 26 ~r~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gkgGvGKtt~ 105 (390)
.|+.+++.+....+++|..++ +..|++...+..+......... +. ++....+ +++.|+.|+|||++
T Consensus 53 ~R~~~~~~~~~k~a~~p~~~~----l~~fd~~~~~~~~~~~i~~L~~-------~~-~i~~~~~--v~l~Gp~GtGKThL 118 (259)
T PRK09183 53 ARHQRKQAMYTRMAAFPAVKT----FEEYDFTFATGAPQKQLQSLRS-------LS-FIERNEN--IVLLGPSGVGKTHL 118 (259)
T ss_pred HHHHHHHHHHHHhCCCCCCCc----HhhcccccCCCCCHHHHHHHhc-------CC-chhcCCe--EEEEeCCCCCHHHH
Confidence 899999999999999999877 8899998888887765554431 11 3444344 33559999999999
Q ss_pred HHHHHHHHHHCCCCeEEEec
Q 016417 106 AASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 106 a~~la~~~a~~g~~vll~d~ 125 (390)
+.+++..+..+|++|+.+++
T Consensus 119 a~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 119 AIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred HHHHHHHHHHcCCeEEEEeH
Confidence 99999998899999998874
No 82
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.87 E-value=1.6e-05 Score=75.96 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=64.8
Q ss_pred hhccchhhhcccccCCCCCCCCccccccccccccccCCccccccccCccccccchhhhhhcCCcEEEEEcCCCCCcHHHH
Q 016417 26 KRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSC 105 (390)
Q Consensus 26 ~r~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gkgGvGKtt~ 105 (390)
.|+++.+........+|..+. +..|++...+........... .+.+++.+. .=+++.|++|||||++
T Consensus 55 ~~~~r~~~~~~~~a~~p~~k~----~~~~d~~~~~~~~~~~l~~~~-------~~~~~~~~~--~nl~l~G~~G~GKThL 121 (254)
T COG1484 55 AREARKIERRLRSASFPAKKT----FEEFDFEFQPGIDKKALEDLA-------SLVEFFERG--ENLVLLGPPGVGKTHL 121 (254)
T ss_pred HHHHHHHHHHHHHhcCCccCC----cccccccCCcchhHHHHHHHH-------HHHHHhccC--CcEEEECCCCCcHHHH
Confidence 788888888888888888865 666666666654443333222 455566633 3444559999999999
Q ss_pred HHHHHHHHHHCCCCeEEEec
Q 016417 106 AASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 106 a~~la~~~a~~g~~vll~d~ 125 (390)
|+++|..+.+.|.+|+++.+
T Consensus 122 a~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 122 AIAIGNELLKAGISVLFITA 141 (254)
T ss_pred HHHHHHHHHHcCCeEEEEEH
Confidence 99999999988999999987
No 83
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.87 E-value=9.9e-06 Score=73.29 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=33.4
Q ss_pred cchhhhcccccCCCCCCCCccccccccccccccCCccccccccCccccccchhhhhhcCCcEEEEEcCCCCCcHHHHHHH
Q 016417 29 SNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSCAAS 108 (390)
Q Consensus 29 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~ 108 (390)
|+++++.+..|.+|+... +..+++.......+....... ..+++.... -+++.|..|+|||++|++
T Consensus 1 ~r~~~~~l~~a~lp~~~~----~~~~d~~~~~~~~~~~~~~l~--------~~~~~~~~~--~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 1 QRRIERRLKQAGLPPDAT----LENFDFSNERGIDKAQIAQLA--------ALEFIENGE--NLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -------------------------------------HHHHHH--------HH-S-SC----EEEEEESTTSSHHHHHHH
T ss_pred CCcccccccccccccccc----cccccccchhhHHHHHHHHHh--------cCCCcccCe--EEEEEhhHhHHHHHHHHH
Confidence 567888888999996655 667777666555544443331 123444433 355558999999999999
Q ss_pred HHHHHHHCCCCeEEEec
Q 016417 109 LAVKFANNGHPTLVVST 125 (390)
Q Consensus 109 la~~~a~~g~~vll~d~ 125 (390)
+|..+.+.|++|+.++.
T Consensus 67 i~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 67 IANEAIRKGYSVLFITA 83 (178)
T ss_dssp HHHHHHHTT--EEEEEH
T ss_pred HHHHhccCCcceeEeec
Confidence 99999999999999987
No 84
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.86 E-value=0.00027 Score=73.10 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=37.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
+.++|.+.++||||||++++|+..|+++|++|..+..+|..
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~ 44 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDY 44 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCc
Confidence 47999999999999999999999999999999999886543
No 85
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=97.79 E-value=0.0011 Score=61.70 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=37.2
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCC
Q 016417 292 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 332 (390)
Q Consensus 292 ~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~ 332 (390)
.+++|+.++..++..+...++.++..|+++.|+|+|++.+.
T Consensus 135 pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~ 175 (222)
T PRK00090 135 PVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPPE 175 (222)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCCc
Confidence 48999999999999999999999999999999999997654
No 86
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.76 E-value=4.8e-05 Score=70.44 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=46.2
Q ss_pred ccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 75 ~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
+++.++|+++.+ ....+..+.|.+|+||||++.++|..++.+|.+|+++|+|..
T Consensus 3 TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 3 TGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred cchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 466788888875 356788888999999999999999999999999999999744
No 87
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.0007 Score=70.70 Aligned_cols=41 Identities=34% Similarity=0.421 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEEecCCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTDPAHS 130 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~d~D~~~~ 130 (390)
.++.+.|++|+||||++.+||..++.. |++|.++++|++..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 344445999999999999999988876 57999999998763
No 88
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.71 E-value=4.9e-05 Score=73.75 Aligned_cols=41 Identities=34% Similarity=0.467 Sum_probs=35.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHC-C-CCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-G-HPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~-g-~~vll~d~D~~~ 129 (390)
..++++.|.+||||||+++.||..++.+ | ++|.+|++|++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 4466666999999999999999999876 5 899999999865
No 89
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=5.7e-05 Score=76.08 Aligned_cols=40 Identities=30% Similarity=0.388 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.++.+.|.+|+||||+++.||..+..+|++|+++++|++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4556669999999999999999999999999999999986
No 90
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.67 E-value=4.9e-05 Score=77.87 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH--HCCCCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a--~~g~~vll~d~D~~~ 129 (390)
.++++.|++||||||+++.||..++ ..|++|.+||+|++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 3566669999999999999999998 568999999999975
No 91
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=5.2e-05 Score=77.00 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHH-HHCCCCeEEEecCCCCCCch
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKF-ANNGHPTLVVSTDPAHSLSD 133 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~-a~~g~~vll~d~D~~~~l~~ 133 (390)
+.++++.|++||||||+++.||..+ ...|++|+++++|++...+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~ 268 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAI 268 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHH
Confidence 4577778999999999999999866 67899999999999875443
No 92
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.64 E-value=0.0001 Score=68.67 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=47.4
Q ss_pred ccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 73 PSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...+++++|+++.++ ...+..+.|.+|+|||+++.++|...++.|.+|+++|++
T Consensus 5 i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 5 LPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred ccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456777899888753 567888889999999999999999999999999999998
No 93
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.0001 Score=73.99 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
..++++.|..||||||+++.+|..+..+|++|.++++|++..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 456666788999999999999999999999999999999864
No 94
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.53 E-value=0.00014 Score=66.92 Aligned_cols=40 Identities=35% Similarity=0.469 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.++++-|..||||||+++-||.++..+|++|.++.+|...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 4566679999999999999999999999999999999765
No 95
>PRK14974 cell division protein FtsY; Provisional
Probab=97.45 E-value=0.00019 Score=71.29 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=37.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
...++++.|.+|+||||+++.+|..+...|++|+++++|+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 346788889999999999999999999999999999999764
No 96
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.45 E-value=0.00026 Score=67.64 Aligned_cols=57 Identities=30% Similarity=0.485 Sum_probs=50.2
Q ss_pred Cccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
...++++++++.+.+ +.+.++++.|.+|+|||+++.++++..++.|.+|++|++|-.
T Consensus 4 ~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 4 RIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred cccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 345678899999986 577788888999999999999999999999999999999844
No 97
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.44 E-value=0.00077 Score=68.18 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=31.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+++.+-..|+||||++..|..+|.++|++|--+-.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKv 37 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKV 37 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccccc
Confidence 578888889999999999999999999988765543
No 98
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.39 E-value=0.00028 Score=67.60 Aligned_cols=53 Identities=28% Similarity=0.469 Sum_probs=45.1
Q ss_pred cccccchhhhhh--------------c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 74 SEAVSGFDEMVA--------------G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 74 ~~~~~~~~~~~~--------------~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++++|+++. + +...+.++.|.+|+||||++.+++...+++|.+|++++++
T Consensus 5 ~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 5 PTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred cCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 456678888772 3 3567888889999999999999999999999999999997
No 99
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.00025 Score=71.79 Aligned_cols=41 Identities=27% Similarity=0.446 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHH----CCCCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFAN----NGHPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~----~g~~vll~d~D~~~ 129 (390)
..++++.|+.||||||+++.+|..+.. .|++|+++++|+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 457777899999999999999998874 57899999999875
No 100
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=97.35 E-value=0.0079 Score=56.31 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=39.0
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCCC
Q 016417 293 FVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPS 333 (390)
Q Consensus 293 ~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~~ 333 (390)
+++|+...-=++..+.=.++.++..|+++.|+|+|++.|..
T Consensus 139 vILV~~~~LGtINHtlLt~eal~~~gl~l~G~I~n~~~~~~ 179 (223)
T COG0132 139 VILVVGIKLGTINHTLLTVEALRARGLPLAGWVANGINPEL 179 (223)
T ss_pred EEEEecCCccHHHHHHHHHHHHHHCCCCEEEEEEccCCCch
Confidence 89999999999999999999999999999999999988765
No 101
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.34 E-value=0.00037 Score=68.16 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSL 131 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l 131 (390)
...++.+.|++|+||||+...++..+.+.|++|.+++.||....
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~ 76 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF 76 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 34556666999999999999999999999999999999987644
No 102
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.28 E-value=0.00039 Score=61.58 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++.+.|-.|+||||+|..|...|...|++|.++|.|
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 5777889999999999999999999999999999998
No 103
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00041 Score=62.28 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=42.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC-CCCCchHhh
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP-AHSLSDSFA 136 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~-~~~l~~~~g 136 (390)
...++-+.|=.|+||||+|.++...|-++|+.|.++|.|- ++.|..-||
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg 71 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG 71 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC
Confidence 3467778899999999999999999999999999999994 567776554
No 104
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.26 E-value=0.00056 Score=62.83 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...+..+.|.+|+|||+++..++...++.|.+|+.+|++-
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4577788899999999999999999999999999999974
No 105
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.23 E-value=0.00052 Score=64.39 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=46.8
Q ss_pred ccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 73 PSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++++++|+++.++ ...++++.|.+|+||||++.++++..+++|.+|++++++
T Consensus 7 ~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 7 ISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred EecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 456788899988763 566777779999999999999999988999999999997
No 106
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.22 E-value=0.00043 Score=64.49 Aligned_cols=55 Identities=27% Similarity=0.456 Sum_probs=43.7
Q ss_pred cccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCCC
Q 016417 74 SEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA 128 (390)
Q Consensus 74 ~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~~ 128 (390)
.++++++|+++.+ +...++++.|.+|+|||+++.++++..+++ |.+|++++++-.
T Consensus 2 ~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 2 PTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp --SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred CCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 3577889999866 366677788999999999999999999999 999999999633
No 107
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.19 E-value=0.0007 Score=63.84 Aligned_cols=54 Identities=24% Similarity=0.463 Sum_probs=46.7
Q ss_pred cccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 74 SEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 74 ~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..+++++|+++.+ +...++++.|.+|+|||++|.++++..+++|.++++++++-
T Consensus 4 ~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 4 KTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred ccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4577788988876 36678888899999999999999999889999999999974
No 108
>PRK07667 uridine kinase; Provisional
Probab=97.19 E-value=0.00071 Score=61.81 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=37.6
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.+.++.++|-+|+||||+|..|+..+...|.+|.+++.|..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 45788889999999999999999999999999999999964
No 109
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.14 E-value=0.00051 Score=65.67 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=43.3
Q ss_pred cccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCC
Q 016417 74 SEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDP 127 (390)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~ 127 (390)
..+.+++++++.+ ....++++.|.+|+||||++.+++..++.+ |.+|++++++.
T Consensus 14 ~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 14 WWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred CCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 3455566666533 244588888999999999999999999888 99999999974
No 110
>PHA02542 41 41 helicase; Provisional
Probab=97.13 E-value=0.00069 Score=70.38 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=51.3
Q ss_pred cCccccccchhhhhh-c-CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHh
Q 016417 71 AAPSEAVSGFDEMVA-G-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSF 135 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~-~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~ 135 (390)
.....+...++.++. + ....+++++|.+|+||||++.++|...++.|++|++++.+-.. .+...+
T Consensus 170 ~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 170 NKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred CccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence 345567788888873 3 2456888999999999999999999999999999999998543 444433
No 111
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.13 E-value=0.0008 Score=60.13 Aligned_cols=39 Identities=33% Similarity=0.437 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.++++.|-+|+||||+|..++..+...|.++.++|.|..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 477777999999999999999999999999999999853
No 112
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.11 E-value=0.00074 Score=65.28 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=33.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
++-+.|.+|+||||++.+|+..|.++| +|.+|+.|+.+
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~ 40 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTE 40 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCC
Confidence 445556679999999999999999999 89999999854
No 113
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.09 E-value=0.00071 Score=60.60 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=33.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++.|.+|+|||+++..++...++.|.+|++++++-
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 567799999999999999999999999999999863
No 114
>PRK05973 replicative DNA helicase; Provisional
Probab=97.08 E-value=0.00074 Score=63.87 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=35.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...+++++|.+|+|||+++.+++...+++|++|++++.+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 456788889999999999999999999999999999884
No 115
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.0007 Score=64.35 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
..+++.|++|+|||++++++|..+.+.|++|+++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 367788999999999999999999999999999965
No 116
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.02 E-value=0.0013 Score=61.38 Aligned_cols=54 Identities=30% Similarity=0.508 Sum_probs=44.6
Q ss_pred cccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 74 SEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 74 ~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..++.++|+++.+. ...++++.|.+|+||||++.+++...++.|.+|++++.+-
T Consensus 3 ~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 3 STGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 35667888877542 5667788899999999999999998888999999999863
No 117
>PRK06696 uridine kinase; Validated
Probab=97.00 E-value=0.0011 Score=61.83 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
....++.++|.+|+||||+|..|+..|...|.+|+.+.+|-.+
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4567899999999999999999999999889999999998655
No 118
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=96.99 E-value=0.0026 Score=69.22 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=33.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
+.+++.+-.+|+|||+++..|+..|.++|++|..+-
T Consensus 3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 468888889999999999999999999999999886
No 119
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.98 E-value=0.0016 Score=60.66 Aligned_cols=51 Identities=25% Similarity=0.450 Sum_probs=42.4
Q ss_pred ccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 77 VSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 77 ~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
++++++++.++ ...++++.|.+|+|||+++.+++...+++|.+|++++++-
T Consensus 2 i~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 2 IPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred chhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44677777643 4567777899999999999999999999999999999974
No 120
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.97 E-value=0.0013 Score=60.21 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
....++.+.|++|+||||++..|+..+...|..++++|.|.-.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 3456777779999999999999999999999999999998643
No 121
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.95 E-value=0.001 Score=57.32 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=34.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
+++.|++|+||||++..++..++..|.+|++++.+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 45679999999999999999999999999999997553
No 122
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.93 E-value=0.0016 Score=61.13 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~ 127 (390)
...+++++|.+|+|||+++.+++..++.+ |.+|++++.+-
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 44688889999999999999999999988 99999999874
No 123
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.91 E-value=0.0014 Score=62.55 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=42.6
Q ss_pred cccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecC
Q 016417 74 SEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTD 126 (390)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D 126 (390)
.++.+.+++.+.+ ....+.+++|.+|+|||+++.++|..++.. |.+|++++.+
T Consensus 3 ~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlE 57 (259)
T PF03796_consen 3 PTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLE 57 (259)
T ss_dssp -SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 3456677777654 345689999999999999999999999997 6999999986
No 124
>PRK04328 hypothetical protein; Provisional
Probab=96.91 E-value=0.0018 Score=61.72 Aligned_cols=55 Identities=24% Similarity=0.422 Sum_probs=47.0
Q ss_pred ccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 73 PSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...+++++|+++.++ ...++++.|.+|+|||+++..++...++.|.++++++++-
T Consensus 5 v~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 5 VKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred ecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 346778899988763 5677778899999999999999999889999999999964
No 125
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.90 E-value=0.0018 Score=63.95 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=46.7
Q ss_pred Cccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 72 APSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 72 ~~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...++.+++|.++. + +...++.+.|..|+||||+|..++...++.|.+|++||+.
T Consensus 35 ~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 35 TISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred eecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 34566778888886 4 3567888889999999999999999999999999999986
No 126
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=96.89 E-value=0.0034 Score=57.33 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=36.7
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCC
Q 016417 292 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 332 (390)
Q Consensus 292 ~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~ 332 (390)
.+++|+..+.-++.++.-.++.++..|+++.|+|+|++-++
T Consensus 131 ~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~~ 171 (199)
T PF13500_consen 131 PVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNRVPEP 171 (199)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEECTCC
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEECCCCH
Confidence 58999999999999999999999999999999999996543
No 127
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.83 E-value=0.0012 Score=62.58 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=33.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
++++.|.+|+||||+|..|+..+...|.+|.+++.|.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 4678899999999999999999999999999998874
No 128
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.82 E-value=0.0021 Score=67.14 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=50.0
Q ss_pred ccCccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 70 VAAPSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 70 ~~~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
......+++++++++.+ +...+++++|.+|+||||++.+++...+++|.+|++++.+
T Consensus 242 ~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 242 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred ccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 34466788899999887 4677888899999999999999999999999999999986
No 129
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.79 E-value=0.0024 Score=63.14 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=46.9
Q ss_pred Cccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 72 APSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 72 ~~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...+++.++|.++. + +...+..+.|.+|+||||+|..++...++.|.++++||+.
T Consensus 35 ~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 35 VIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred eecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 45567778888887 4 3566777889999999999999999999999999999985
No 130
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.78 E-value=0.0017 Score=58.68 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=34.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
++.++|..|+||||+|..++..+...|.++.+++.|-.+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 356789999999999999999999999999999999554
No 131
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=96.78 E-value=0.002 Score=67.17 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCcEEEEEcCCC---CCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccC
Q 016417 87 TQRKYYMLGGKG---GVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140 (390)
Q Consensus 87 ~~~~~~~~~gkg---GvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~ 140 (390)
..+.|+++|.-+ |.||||+++|||..+++.|+||+++ =.+++++..||.+.+
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli--LR~Psl~~~fg~kgg 108 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA--LREPSLGPVFGIKGG 108 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE--EecCCcccccCCCCC
Confidence 367899999999 9999999999999999999999999 356799999986643
No 132
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.77 E-value=0.0023 Score=65.53 Aligned_cols=57 Identities=25% Similarity=0.438 Sum_probs=47.1
Q ss_pred cCccccccchhhhhhcC-CcEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecCC
Q 016417 71 AAPSEAVSGFDEMVAGT-QRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDP 127 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D~ 127 (390)
.....+...++.++.+- ...+++++|.+|+|||+++.++|..++ ++|++|++++.+-
T Consensus 175 ~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm 233 (421)
T TIGR03600 175 TGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEM 233 (421)
T ss_pred cceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34556777888887653 456888899999999999999999998 6799999999874
No 133
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.75 E-value=0.0027 Score=64.10 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=48.4
Q ss_pred cCccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 71 AAPSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.....++..+|+.+.+ ....++++.|.+|+||||++..+|..+++.|.+|++++.+-
T Consensus 62 ~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred CccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 3456678889988875 35678888999999999999999999999999999999863
No 134
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.74 E-value=0.0026 Score=65.88 Aligned_cols=56 Identities=25% Similarity=0.434 Sum_probs=48.4
Q ss_pred cCccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 71 AAPSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
....+++.++|+++.+ ....+++++|.+|+||||++..++..+++.|.+|++++.+
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 3456678889988875 3667888899999999999999999999999999999986
No 135
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.74 E-value=0.0018 Score=56.67 Aligned_cols=37 Identities=32% Similarity=0.502 Sum_probs=33.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
+++.|.+|+||||+|..++..+...|.++.++|.|..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 5667999999999999999999999999999988754
No 136
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.74 E-value=0.003 Score=65.29 Aligned_cols=56 Identities=25% Similarity=0.458 Sum_probs=47.8
Q ss_pred CccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 72 APSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
....++.++|+.+.++ ...++++.|.+|+||||++..++..++++|.+|+++++.-
T Consensus 61 ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 61 RISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred cccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3556778899888753 5678888999999999999999999999999999999863
No 137
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.67 E-value=0.0017 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
++++.|.+|+||||+|..||..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999877
No 138
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.67 E-value=0.0013 Score=64.55 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=55.3
Q ss_pred hhccchhhhcccccCCCCCCCCccccccccccccccCCccccccccCccccccchhhhhh----cCCcEEEEEcCCCCCc
Q 016417 26 KRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVA----GTQRKYYMLGGKGGVG 101 (390)
Q Consensus 26 ~r~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~gkgGvG 101 (390)
.|+++++.+....+.+|..-. ...|.++..... ....... ...+++. +....-+++.|+.|+|
T Consensus 102 ~r~~~~~~~~i~~a~~p~~~~-~atf~~~~~~~~---~~~~~~~---------~~~~fi~~~~~~~~~~gl~L~G~~G~G 168 (306)
T PRK08939 102 ADEEKAIKKRIQSIYMPKDLL-QASLADIDLDDR---DRLDALM---------AALDFLEAYPPGEKVKGLYLYGDFGVG 168 (306)
T ss_pred HHHHHHHHHHHHHcCCCHhHh-cCcHHHhcCCCh---HHHHHHH---------HHHHHHHHhhccCCCCeEEEECCCCCC
Confidence 677788888888888887210 012555554321 0000000 1112222 1133456667999999
Q ss_pred HHHHHHHHHHHHHHCCCCeEEEec
Q 016417 102 KTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 102 Ktt~a~~la~~~a~~g~~vll~d~ 125 (390)
||+++.++|..++++|++|.++..
T Consensus 169 KThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 169 KSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEH
Confidence 999999999999999999999987
No 139
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.67 E-value=0.0035 Score=62.19 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=39.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSL 131 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l 131 (390)
...++-+.|.+|+||||+...++..+...|++|.++..||+...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~ 98 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR 98 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence 34677778999999999999999999999999999999998654
No 140
>PHA00729 NTP-binding motif containing protein
Probab=96.66 E-value=0.0031 Score=59.19 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
.-+++.|.+||||||+|.++|..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566679999999999999999875
No 141
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=96.65 E-value=0.0028 Score=65.40 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCC---CCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccC
Q 016417 87 TQRKYYMLGGKG---GVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140 (390)
Q Consensus 87 ~~~~~~~~~gkg---GvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~ 140 (390)
..+.|++++--+ |.||||++++||..|++.|+||+++ =.+++++..||.+.+
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~--LR~PSlg~~fg~kgg 91 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC--LREPSLGPTFGIKGG 91 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE--EecCCcCcccCCCCC
Confidence 367889999899 9999999999999999999999988 356799999987654
No 142
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.65 E-value=0.0022 Score=57.86 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHH----------CCCCeEEEecCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFAN----------NGHPTLVVSTDPA 128 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~----------~g~~vll~d~D~~ 128 (390)
..+.++.|.+|+||||++.+++..++. .+.+|+++++|-.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 357778899999999999999999996 5668888888643
No 143
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.62 E-value=0.0035 Score=65.42 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=46.5
Q ss_pred ccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecC
Q 016417 73 PSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTD 126 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D 126 (390)
...+++++|+++.+. ...++++.|-+|+||||+|..++..-+++ |.++++|+.+
T Consensus 3 ~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 3 IRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 356788999998863 67788888999999999999999987776 8999999987
No 144
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.62 E-value=0.0032 Score=58.37 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=43.5
Q ss_pred ccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCC------CCeEEEecCC
Q 016417 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNG------HPTLVVSTDP 127 (390)
Q Consensus 75 ~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g------~~vll~d~D~ 127 (390)
+++..+|+++.+ ....+..+.|.+|+|||+++..+|...+..| .+|+.+|++-
T Consensus 3 tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 3 TGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 456678887764 2456777789999999999999999988887 8999999974
No 145
>PF13245 AAA_19: Part of AAA domain
Probab=96.60 E-value=0.0034 Score=48.70 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=30.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHC----CCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANN----GHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~----g~~vll~d~ 125 (390)
..+.++.|-+|+||||++++++..+... |.+|+++..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 4567778999999999999998888865 788999865
No 146
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.56 E-value=0.0039 Score=63.19 Aligned_cols=42 Identities=29% Similarity=0.409 Sum_probs=38.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
...++++.|=.|+||||.++-||.+|.++|++|++|.+|.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 346777779999999999999999999999999999999775
No 147
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.55 E-value=0.0039 Score=63.98 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=46.6
Q ss_pred Cccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~ 128 (390)
....+.+++++++.+ ....+++++|.+|+|||+++.++|..++. .|++|++++.+..
T Consensus 177 gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~ 235 (434)
T TIGR00665 177 GVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS 235 (434)
T ss_pred cccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC
Confidence 345677788887754 34568899999999999999999999886 6999999998743
No 148
>PRK08506 replicative DNA helicase; Provisional
Probab=96.54 E-value=0.0037 Score=65.07 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=47.3
Q ss_pred CccccccchhhhhhcC-CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAGT-QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
....+...++.+..+- ...+++++|.+|+|||+++.++|...+++|++|++++.+..
T Consensus 174 Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs 231 (472)
T PRK08506 174 GLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMP 231 (472)
T ss_pred cccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCC
Confidence 3456777788776543 45688999999999999999999999999999999998744
No 149
>PRK09354 recA recombinase A; Provisional
Probab=96.53 E-value=0.0046 Score=61.68 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=47.5
Q ss_pred Cccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 72 APSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 72 ~~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...++.+++|.++. + +...+..+.|..|+||||+|..++...++.|.+++.||+.-
T Consensus 40 ~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 40 VISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred eecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 45567778998887 4 35678888899999999999999999999999999999963
No 150
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.0036 Score=63.09 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHH-HCC-CCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFA-NNG-HPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a-~~g-~~vll~d~D~~~ 129 (390)
+.++++.|..||||||+++.||..+. +.| .+|.++++|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 44666779999999999999998876 446 589999999763
No 151
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.52 E-value=0.0035 Score=58.46 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=42.6
Q ss_pred ccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCCeEEEecCCC
Q 016417 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDPA 128 (390)
Q Consensus 75 ~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~------g~~vll~d~D~~ 128 (390)
.+++++|.++.+ ....++.+.|.+|+||||++.+++...... +.+|+++|++..
T Consensus 3 tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 3 TGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred CCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence 456678877775 356788888999999999999999876554 378999999753
No 152
>PRK06762 hypothetical protein; Provisional
Probab=96.51 E-value=0.0033 Score=55.51 Aligned_cols=35 Identities=37% Similarity=0.582 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.++++.|..|+||||+|..|+..+ |..+.+++.|.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~ 37 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDV 37 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHH
Confidence 577778999999999999999887 45688888763
No 153
>PRK05595 replicative DNA helicase; Provisional
Probab=96.49 E-value=0.004 Score=64.28 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=44.7
Q ss_pred ccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecCC
Q 016417 73 PSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDP 127 (390)
Q Consensus 73 ~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D~ 127 (390)
...+...+++++.+ ....+++++|.+|+|||+++.++|..+| ++|++|++++.+-
T Consensus 184 i~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm 240 (444)
T PRK05595 184 VASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM 240 (444)
T ss_pred ccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 45567778877654 2456888899999999999999999876 6799999999874
No 154
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.49 E-value=0.0052 Score=59.53 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=42.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC--CCchHhhccc
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH--SLSDSFAQDL 139 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~--~l~~~~g~~~ 139 (390)
++=+.|-||+||||+.-.|...|.++|+||.++-.||.. +-+.+||-..
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 556679999999999999999999999999999999986 5567777543
No 155
>PRK12377 putative replication protein; Provisional
Probab=96.47 E-value=0.0038 Score=59.49 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.-+++.|..|+|||++|.++|..+.+.|++|++++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 456677999999999999999999999999998877
No 156
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.46 E-value=0.0044 Score=64.41 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=33.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH-HCC-CCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFA-NNG-HPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a-~~g-~~vll~d~D~~~ 129 (390)
.++.+-|..||||||+.+.||..+. ++| .+|.++++|++.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 5677779999999999999998885 556 489999999863
No 157
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.44 E-value=0.0039 Score=59.41 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC--CCchHhhcc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH--SLSDSFAQD 138 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~--~l~~~~g~~ 138 (390)
-.++=+.|.||+||||+.-.|+..+.+.|++|.++-.||.. +=+.+||-.
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDR 80 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDR 80 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--G
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccH
Confidence 34666789999999999999999999999999999999985 444666643
No 158
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.44 E-value=0.0042 Score=54.92 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=31.8
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.+.|..|+||||++..+...+..+|++|.++..|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45569999999999999999999999999999876
No 159
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.0048 Score=55.12 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..++++.|-.|+||||++..++..+...+..+.++|.|.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 457888899999999999999999998888999998763
No 160
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.43 E-value=0.0054 Score=57.73 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=39.1
Q ss_pred chhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 79 GFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 79 ~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.+++++.+ +...++.+.|..|+||||++.+++..++++|.+++.++++-
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 44444443 23457777899999999999999999999999999999864
No 161
>PRK05748 replicative DNA helicase; Provisional
Probab=96.42 E-value=0.0043 Score=64.09 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=47.2
Q ss_pred cCccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCC
Q 016417 71 AAPSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA 128 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~ 128 (390)
....++..+++.++.+ ....+++++|.+|+|||+++.++|...|. .|++|++++.+-.
T Consensus 184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms 243 (448)
T PRK05748 184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG 243 (448)
T ss_pred CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3456677788887765 34568889999999999999999999884 6999999998744
No 162
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.42 E-value=0.005 Score=56.96 Aligned_cols=48 Identities=17% Similarity=0.374 Sum_probs=37.7
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+..++.......+++.|+.|+||||++..++..+.+.|.+++.++++
T Consensus 28 ~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 28 ALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 344444344455666779999999999999999988889999999875
No 163
>PRK06749 replicative DNA helicase; Provisional
Probab=96.40 E-value=0.0047 Score=63.49 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=45.7
Q ss_pred ccccccchhhhhhcC-CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 73 PSEAVSGFDEMVAGT-QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~-~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
...+...++.+..+- ...+++++|.+|+|||+++.++|...|++|++|++++.+..
T Consensus 169 i~TG~~~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs 225 (428)
T PRK06749 169 IETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMS 225 (428)
T ss_pred ccCCcHHHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCC
Confidence 445666777766552 45688999999999999999999999999999999988643
No 164
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.40 E-value=0.0059 Score=64.09 Aligned_cols=55 Identities=24% Similarity=0.443 Sum_probs=47.3
Q ss_pred Cccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecC
Q 016417 72 APSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTD 126 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D 126 (390)
....+++++++++.+ +...++++.|.+|+|||+++.+++...+++ |.+|++++++
T Consensus 12 ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 12 KLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred cccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 456678899999875 356788888999999999999999988887 9999999987
No 165
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.0058 Score=53.62 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=40.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC-CCCCchHhh
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP-AHSLSDSFA 136 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~-~~~l~~~~g 136 (390)
...++-+.|-.|+||||+|++|...|-++|.-+..+|.|. +|.|..-||
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~ 79 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLG 79 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccC
Confidence 3445555699999999999999999999999999999995 567776554
No 166
>PRK08006 replicative DNA helicase; Provisional
Probab=96.39 E-value=0.0051 Score=63.95 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=46.0
Q ss_pred Cccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~ 128 (390)
...++...++.++.+ ....+++++|.+|+|||++|.++|..+|. +|++|++++....
T Consensus 206 Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 206 GVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred cccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 355677778877655 34578889999999999999999999884 6899999988743
No 167
>PRK08760 replicative DNA helicase; Provisional
Probab=96.38 E-value=0.0048 Score=64.30 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=45.9
Q ss_pred CccccccchhhhhhcC-CcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAGT-QRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~ 128 (390)
...++...++.+..+- ...+++++|.+|+|||+++.++|...|. .|++|++++.+..
T Consensus 211 Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs 269 (476)
T PRK08760 211 GLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS 269 (476)
T ss_pred cccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC
Confidence 3456777888777553 4568888999999999999999999885 5899999988643
No 168
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.36 E-value=0.0074 Score=52.43 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=28.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeE-EEecCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTL-VVSTDP 127 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vl-l~d~D~ 127 (390)
+.+.|.-|+||||++..|...|.++|++|. +.+.|.
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 334466799999999999999999999999 888887
No 169
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.35 E-value=0.003 Score=52.14 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=32.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.+++.|.+|+||||++..+|..+...+..++.++.+...
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 455569999999999999999998887789999887554
No 170
>COG4240 Predicted kinase [General function prediction only]
Probab=96.30 E-value=0.0066 Score=56.77 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=38.6
Q ss_pred hhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CCeEEEecC
Q 016417 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNG-HPTLVVSTD 126 (390)
Q Consensus 84 ~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g-~~vll~d~D 126 (390)
.+....-|+.++|..|+||||+|+.+-..|++.| ++|+-++.|
T Consensus 45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD 88 (300)
T COG4240 45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD 88 (300)
T ss_pred hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehh
Confidence 3445678999999999999999999999999998 799999998
No 171
>PRK06321 replicative DNA helicase; Provisional
Probab=96.29 E-value=0.006 Score=63.47 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=46.3
Q ss_pred CccccccchhhhhhcC-CcEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAGT-QRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D~~ 128 (390)
...++...+++++.+- ...+++++|.+|+|||+++.++|..+| +.|++|++++.+-.
T Consensus 208 Gi~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 208 GIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred ccccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 4456777888887753 446888999999999999999999988 46899999988643
No 172
>PRK08840 replicative DNA helicase; Provisional
Probab=96.28 E-value=0.0066 Score=63.06 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=45.9
Q ss_pred Cccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~ 128 (390)
...++...++.++.+ ....+++++|.+|+|||+++.++|...|. +|++|++++....
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 445667777777655 35578889999999999999999999884 6899999998743
No 173
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.28 E-value=0.0078 Score=54.20 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
....++++.|..|+||||++..++..+...|..++++|.|.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~ 56 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN 56 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence 34568888899999999999999999988888899999875
No 174
>PRK06904 replicative DNA helicase; Validated
Probab=96.27 E-value=0.0062 Score=63.37 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=46.5
Q ss_pred cCccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCC
Q 016417 71 AAPSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA 128 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~ 128 (390)
....++...++.++.+ ....+++++|.+|+|||+++.++|...|. .|++|++++.+..
T Consensus 202 ~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 202 TGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred CCccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3455677778877654 34568889999999999999999999885 5999999998743
No 175
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=96.27 E-value=0.0059 Score=63.64 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCC---CCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccC
Q 016417 87 TQRKYYMLGGKG---GVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140 (390)
Q Consensus 87 ~~~~~~~~~gkg---GvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~ 140 (390)
..+.|++++--+ |.||||++++||..+++.|++| +|+=.+++++..||.+.+
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~LR~Pslg~~fg~kgg 107 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CACIRQPSMGPVFGVKGG 107 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEEeccCCcCCccCCCCC
Confidence 367888998888 9999999999999999999999 777456799999987654
No 176
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.24 E-value=0.008 Score=55.28 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
...++.++|.+|+||||++..|+..+ .+..+.+++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 45678888999999999999999887 56689999999754
No 177
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.24 E-value=0.0069 Score=57.08 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=38.9
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.+..+........+++.|..|+|||+++.+++..+.+.|++|.+++.|.
T Consensus 35 ~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 35 ALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3444443334446777899999999999999999999999999999874
No 178
>PRK09165 replicative DNA helicase; Provisional
Probab=96.24 E-value=0.0064 Score=63.72 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=43.1
Q ss_pred CccccccchhhhhhcC-CcEEEEEcCCCCCcHHHHHHHHHHHHHHC---------------CCCeEEEecC
Q 016417 72 APSEAVSGFDEMVAGT-QRKYYMLGGKGGVGKTSCAASLAVKFANN---------------GHPTLVVSTD 126 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~~~~gkgGvGKtt~a~~la~~~a~~---------------g~~vll~d~D 126 (390)
...+++..+++++.+- ...+++++|.+|+||||++.++|...|.. |.+|++++..
T Consensus 199 gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE 269 (497)
T PRK09165 199 GISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE 269 (497)
T ss_pred cccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc
Confidence 4556777888887653 44688889999999999999999999864 5667777665
No 179
>PRK08727 hypothetical protein; Validated
Probab=96.13 E-value=0.0071 Score=56.93 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++.|+.|+|||+++.+++..+.++|++|.+++++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 4577789999999999999999999999999999875
No 180
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0048 Score=56.89 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=34.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.+++++|-+|+||||+|-+||..|.+.+.+|.-++.|-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 47888999999999999999999999999999888873
No 181
>PRK05642 DNA replication initiation factor; Validated
Probab=96.12 E-value=0.0066 Score=57.22 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++.|+.|+|||+++.+++..+.++|++|+.++++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 3566779999999999999999999899999999986
No 182
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.11 E-value=0.006 Score=60.52 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.-+++.|..|+|||+++.++|..+..+|++|+.+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 456667999999999999999999999999999987
No 183
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.10 E-value=0.0095 Score=45.07 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=27.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|..|+||||++..++..+ .|.++.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 4557999999999999999999 6778888876
No 184
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.10 E-value=0.011 Score=49.21 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
....+++.|.+|+||||++..++..+...+.++..++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 345666779999999999999999998778888888774
No 185
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.09 E-value=0.012 Score=59.25 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=33.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.+++-|.-.+||||++.-||-.+-++|++|.++|+|+.
T Consensus 75 ~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvG 112 (398)
T COG1341 75 VVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVG 112 (398)
T ss_pred EEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCC
Confidence 44444777899999999999999999999999999964
No 186
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.04 E-value=0.01 Score=57.20 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=34.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.+.+.|++|+||||+...++..+..+|.+|.++++|++.
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 455559999999999999999999889999999999875
No 187
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.03 E-value=0.0053 Score=58.15 Aligned_cols=40 Identities=33% Similarity=0.465 Sum_probs=29.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchH
Q 016417 95 GGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDS 134 (390)
Q Consensus 95 ~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~ 134 (390)
-|..|+||||.+.++..++...|+++.+|..||+. ++..-
T Consensus 2 iGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~ 42 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYP 42 (238)
T ss_dssp EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS-
T ss_pred CCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccC
Confidence 38999999999999999999999999999999986 44443
No 188
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.02 E-value=0.012 Score=61.82 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=48.1
Q ss_pred ccCccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 70 VAAPSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
......++.++++++.++ ...++++.|.+|+|||+++.+++...++.|.+|++++++-
T Consensus 252 ~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 252 NERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred cccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 334567888999988753 4556666899999999999999999999999999999863
No 189
>PRK07004 replicative DNA helicase; Provisional
Probab=96.02 E-value=0.0078 Score=62.46 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=45.8
Q ss_pred Cccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~ 128 (390)
...++...+++++.+ ....+++++|.+|+|||+++.++|..+|. .|++|++++....
T Consensus 195 gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~ 253 (460)
T PRK07004 195 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP 253 (460)
T ss_pred CccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 345667777777654 34568888999999999999999998874 6999999998744
No 190
>PRK06893 DNA replication initiation factor; Validated
Probab=96.01 E-value=0.0088 Score=56.14 Aligned_cols=38 Identities=11% Similarity=0.294 Sum_probs=34.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...+++.|+.|+|||+++.++|..+.++|.++.+++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34567779999999999999999999999999999985
No 191
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.00 E-value=0.061 Score=51.70 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=39.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDS 134 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~ 134 (390)
.++++++-|=.|+||||+...|-.++...+.+-.+|..||+- +++.-
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~ 65 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYP 65 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCc
Confidence 456777779999999999999999999999999999999873 55543
No 192
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.94 E-value=0.011 Score=56.82 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=36.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~ 132 (390)
+.+.|-.|+||||++..++..+.+.|.++.+++.|..+...
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~ 42 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYE 42 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCC
Confidence 45579999999999999999999999999999999888633
No 193
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.94 E-value=0.012 Score=57.70 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=42.1
Q ss_pred ccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCCeEEEecCC
Q 016417 73 PSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~------~g~~vll~d~D~ 127 (390)
..+....+++++.++ ...+..+.|.+|+||||++..++...+. .+.+|+.||++-
T Consensus 77 ~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 77 ITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred ecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 344556788777753 5677778899999999999999988763 233899999964
No 194
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.94 E-value=0.013 Score=52.00 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=29.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
.+.+..|. |.||||.|..+|...+.+|++|+++=
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566666 99999999999999999999999953
No 195
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.91 E-value=0.0093 Score=54.30 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=33.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCC----eEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHP----TLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~----vll~d~D~~~ 129 (390)
|+.++|-+|+||||+|..|+..|.+.|.+ +.++..|...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 46678999999999999999999998877 6777777543
No 196
>PRK15453 phosphoribulokinase; Provisional
Probab=95.90 E-value=0.014 Score=56.49 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=38.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSL 131 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l 131 (390)
.+.++.+.|-.|+||||++..++..+.+.|.++.+++.|-.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~y 47 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRY 47 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccccc
Confidence 34567778999999999999999999888889999999988753
No 197
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=95.89 E-value=0.11 Score=53.58 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.+++.+-..|+||||+++.|+.+|.++|.+|--+-..|
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gp 40 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGP 40 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCC
Confidence 58888889999999999999999999999887665533
No 198
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.86 E-value=0.013 Score=54.57 Aligned_cols=39 Identities=15% Similarity=0.379 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...+++.|+.|+|||+++.+++..+.+.|.++..++++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 345677799999999999999999989999999999854
No 199
>PRK04296 thymidine kinase; Provisional
Probab=95.85 E-value=0.014 Score=53.18 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
.+.++.|..|+||||.+..++..++.+|++|+++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 57788899999999999999999999999999993
No 200
>PRK05439 pantothenate kinase; Provisional
Probab=95.84 E-value=0.016 Score=57.04 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHH--CCCCeEEEecCCCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTDPAHS 130 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~--~g~~vll~d~D~~~~ 130 (390)
....++.++|-+|+||||+|..|+..+.+ .|.+|.++.+|-.+-
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 34567888999999999999999998876 467999999997663
No 201
>PRK05636 replicative DNA helicase; Provisional
Probab=95.84 E-value=0.012 Score=61.77 Aligned_cols=57 Identities=14% Similarity=0.327 Sum_probs=45.3
Q ss_pred Cccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D~~ 128 (390)
...++...++.+..+ ....+++++|.+|+|||+++.++|...+ +.|++|++++....
T Consensus 247 Gi~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 247 GIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred ceecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 345567778877654 3567888899999999999999999887 46889999988643
No 202
>PRK08233 hypothetical protein; Provisional
Probab=95.84 E-value=0.008 Score=53.47 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.++.+.|.+|+||||+|..|+..+. +..++..|.+...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~ 41 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFD 41 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcc
Confidence 5666778889999999999998774 3467777776543
No 203
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.81 E-value=0.012 Score=54.90 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=32.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHH--CCCCeEEEecCCCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTDPAH 129 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~--~g~~vll~d~D~~~ 129 (390)
+-+.|.+|+||||+|..|+..+.. .+.+|.++..|-.+
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 456799999999999999998875 56789999999764
No 204
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.78 E-value=0.01 Score=59.10 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=33.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDP 127 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D~ 127 (390)
+.++.|-.|+||||++..++.+|. ..|++|.++|.|-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 357789999999999999999997 5899999999993
No 205
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.77 E-value=0.015 Score=57.21 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=43.9
Q ss_pred Cccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~------g~~vll~d~D~~ 128 (390)
........+++++.+ +...+..+.|.+|+|||+++.+++...+.. +.+|++||++-.
T Consensus 83 ~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 83 KITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred ccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence 344566678887765 356777788999999999999999887653 348999999753
No 206
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.73 E-value=0.013 Score=53.39 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=30.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
++.+.|..|+||||++..++..+ .+.++.+++.|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 35677999999999999998887 56789999999543
No 207
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.69 E-value=0.014 Score=58.95 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a--~~g~~vll~d~D~~~ 129 (390)
++++++-|..||||||.-|-||+.+. ...++|.+|++|...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence 56777779999999999999999998 455799999999654
No 208
>PRK08116 hypothetical protein; Validated
Probab=95.69 E-value=0.015 Score=55.95 Aligned_cols=37 Identities=32% Similarity=0.411 Sum_probs=32.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+..+++.|..|+|||++|.+++..+.++|++|++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3457778999999999999999999999999999885
No 209
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.014 Score=63.64 Aligned_cols=41 Identities=32% Similarity=0.433 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHH-HCC-CCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFA-NNG-HPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a-~~g-~~vll~d~D~~~ 129 (390)
..++.+-|..||||||+.+.||..+. ..| ++|.++++|.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 45777779999999999999998884 566 599999999765
No 210
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.68 E-value=0.019 Score=57.26 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=46.3
Q ss_pred ccCccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHH----C--CCCeEEEecCC
Q 016417 70 VAAPSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN----N--GHPTLVVSTDP 127 (390)
Q Consensus 70 ~~~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~----~--g~~vll~d~D~ 127 (390)
.....+++.++|+++.+ ....+..+.|..|+|||+++.+++...+. . +.+|+.||+.-
T Consensus 105 ~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 105 VVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 34466788899999886 36678888899999999999999886653 2 25999999963
No 211
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.67 E-value=0.024 Score=50.33 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.++.+.|..|+||||+...+...+...|++|..+-.|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 356667889999999999999999999999999877643
No 212
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.67 E-value=0.015 Score=54.64 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
+.++.|.||+||||++..+|.++|.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~ 27 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5667799999999999999998874
No 213
>PRK06921 hypothetical protein; Provisional
Probab=95.67 E-value=0.015 Score=55.90 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~ 125 (390)
..-+++.|+.|+|||+++.++|..+.++ |++|+.++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3456667999999999999999999988 999998886
No 214
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.65 E-value=0.02 Score=51.52 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+.++.| .|.||||.|..+|..++.+|++|+++=.
T Consensus 7 li~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 7 IIIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred EEEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4555545 9999999999999999999999998843
No 215
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.62 E-value=0.017 Score=56.93 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=44.7
Q ss_pred Cccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCCeEEEecCC
Q 016417 72 APSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~------~g~~vll~d~D~ 127 (390)
....+...+|+++.+ ....+..+.|.+|+|||+++..++...+. .|.+|+.||+.-
T Consensus 77 ~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 77 KITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred eeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 355677889988886 36678888899999999999999876542 356999999964
No 216
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.61 E-value=0.013 Score=51.58 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+..+++.|.+|+||||+|..||..+ | ..++|.|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l---~--~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL---G--YDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh---C--CCEEECh
Confidence 3567777999999999999999887 3 4455765
No 217
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.60 E-value=0.026 Score=50.96 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
..++++-|-.|+||||++..|+.++...|++|.++..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3678888999999999999999999999998877654
No 218
>PF12846 AAA_10: AAA-like domain
Probab=95.56 E-value=0.023 Score=54.21 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=33.2
Q ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHh
Q 016417 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF 135 (390)
Q Consensus 94 ~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~ 135 (390)
+.|+.|+||||+..++...+...|.+++++ |+.+....+.
T Consensus 6 i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~--D~~g~~~~~~ 45 (304)
T PF12846_consen 6 ILGKTGSGKTTLLKNLLEQLIRRGPRVVIF--DPKGDYSPLA 45 (304)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCCEEEE--cCCchHHHHH
Confidence 349999999999999999999999999999 5555544443
No 219
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.54 E-value=0.0092 Score=50.87 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=24.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++++.|.+|+||||++..++..+- ..++|.|
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D 31 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQD 31 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHH
Confidence 567789999999999988875442 6667776
No 220
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.52 E-value=0.016 Score=55.94 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++++.|-+|+||||+|..|...+...+.+|.+++-|
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~ 38 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD 38 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 678889999999999999999999999999999964
No 221
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.52 E-value=0.023 Score=56.02 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
...++++-|-.||||||.-+-||.++.++|++|++.=+|..
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTF 178 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTF 178 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchH
Confidence 35667777999999999999999999999999999999854
No 222
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.46 E-value=0.029 Score=50.27 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=31.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++++-|..|+||||++..|+..+...|++|..+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56777999999999999999999999999976654
No 223
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=95.40 E-value=0.025 Score=53.29 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=30.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++.+.|..|+||||++..++..|.++|++|.++..
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 44555778999999999999999999999999964
No 224
>PF05729 NACHT: NACHT domain
Probab=95.38 E-value=0.016 Score=50.19 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=25.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGH 118 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~ 118 (390)
++++.|++|+||||++..++..++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 6778899999999999999999998864
No 225
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.33 E-value=0.016 Score=50.14 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=26.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
++++.|..|+||||+|..++..+ ...++|.|.-.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~ 34 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLH 34 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccc
Confidence 46778999999999999998764 34567887543
No 226
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.019 Score=50.95 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=27.9
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEE
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVV 123 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~ 123 (390)
++++|.+||||||++.-++-.|.+.|++|.=+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf 39 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGF 39 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence 44569999999999999999999999988654
No 227
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.29 E-value=0.017 Score=52.78 Aligned_cols=35 Identities=37% Similarity=0.565 Sum_probs=26.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH--------HHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKF--------ANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~--------a~~g~~vll~d~ 125 (390)
+.++.|.+|+||||+.++++..+ ...+.+++++..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~ 61 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSP 61 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEES
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecC
Confidence 78889999999999999998888 456677777764
No 228
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.25 E-value=0.035 Score=51.94 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEE-EecCCCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLV-VSTDPAHS 130 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll-~d~D~~~~ 130 (390)
....++.+.|.+|+||||++..++..+...+..+.+ +..|..+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~ 75 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL 75 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC
Confidence 456788888999999999999999999988777777 88886553
No 229
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.17 E-value=0.036 Score=49.97 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=33.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++.+.|..|+||||+...+...+..+|.+|..|-.+
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 45677779999999999999999999999999988654
No 230
>PTZ00035 Rad51 protein; Provisional
Probab=95.14 E-value=0.036 Score=55.21 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=45.0
Q ss_pred cCccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCCeEEEecCC
Q 016417 71 AAPSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~------~g~~vll~d~D~ 127 (390)
.....+...+|+++.++ ...+..+.|..|+||||++..++..... .+.+|+.||+..
T Consensus 98 ~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 98 IRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred ccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 44567788999998863 5677888899999999999999876542 456899999864
No 231
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.13 E-value=0.029 Score=47.85 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=35.4
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhc
Q 016417 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~ 137 (390)
++.|..|+|||+++-.+|..+ +.++..+......+..+++|.
T Consensus 3 lL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCE
T ss_pred EEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceee
Confidence 445999999999999999988 889999998877777888874
No 232
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.044 Score=55.44 Aligned_cols=53 Identities=26% Similarity=0.532 Sum_probs=44.2
Q ss_pred cccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 74 SEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 74 ~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..++..++.-+-+ ...-++.++|-+|.||||+-..++..+|+++ +||+|+..-
T Consensus 76 ~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 76 STGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred cCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 3455566666665 4677899999999999999999999999999 999999863
No 233
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.07 E-value=0.045 Score=52.45 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=34.5
Q ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcc
Q 016417 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (390)
Q Consensus 94 ~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~ 138 (390)
+.|..|+|||++|.++|.. .|.++..+.+++.....+++|..
T Consensus 26 L~G~~GtGKT~lA~~la~~---lg~~~~~i~~~~~~~~~dllg~~ 67 (262)
T TIGR02640 26 LRGPAGTGKTTLAMHVARK---RDRPVMLINGDAELTTSDLVGSY 67 (262)
T ss_pred EEcCCCCCHHHHHHHHHHH---hCCCEEEEeCCccCCHHHHhhhh
Confidence 4599999999999999874 38999999998776667777643
No 234
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.06 E-value=0.042 Score=60.20 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=47.2
Q ss_pred Cccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 72 APSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 72 ~~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...++...+|.++. + +...+..+.|..|+||||++..++...++.|.+|++||+.-
T Consensus 40 ~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~ 98 (790)
T PRK09519 40 VIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (790)
T ss_pred eecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 44567778888887 3 35678888899999999999999999999999999999874
No 235
>PRK10536 hypothetical protein; Provisional
Probab=95.01 E-value=0.057 Score=51.71 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecCCCCCCchHhh
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D~~~~l~~~~g 136 (390)
.++++.|..|+|||++|.++|.... ...++.+++. .|.-+..+.+|
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~-RP~v~~ge~LG 121 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT-RPVLQADEDLG 121 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe-CCCCCchhhhC
Confidence 3778889999999999999999644 4445555553 45545555444
No 236
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.02 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
++.+||++|+||||+|.-||-.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 57789999999999999888765
No 237
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.94 E-value=0.028 Score=51.44 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..++++++.|-+|+||||++..+...+. +...+.||.|-
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~ 51 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE 51 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence 4568999999999999999998877666 66899999984
No 238
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.91 E-value=0.022 Score=47.22 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
++++|..||||||+|..|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999988
No 239
>PRK07773 replicative DNA helicase; Validated
Probab=94.88 E-value=0.034 Score=62.34 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=44.8
Q ss_pred CccccccchhhhhhcC-CcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecC
Q 016417 72 APSEAVSGFDEMVAGT-QRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTD 126 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D 126 (390)
....+...+++++.+- ..-+++++|.+|+|||++|.++|...|.+ |.+|++++.+
T Consensus 199 Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlE 255 (886)
T PRK07773 199 GVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLE 255 (886)
T ss_pred CccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3455677788777542 45688889999999999999999999864 8899999987
No 240
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.86 E-value=0.03 Score=51.52 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++++|.+|+||||+|..+|..+ |.. .++++|
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~---~~~-~~~~~D 36 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR---AID-IVLSGD 36 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCe-EEehhH
Confidence 4688889999999999999998864 443 356665
No 241
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.80 E-value=0.039 Score=50.77 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
...++.+.|.+|+||||++..++..+.. ..+.++..|...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~ 44 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNYY 44 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEecccccc
Confidence 4467788899999999999999887643 467788888653
No 242
>PRK06547 hypothetical protein; Provisional
Probab=94.78 E-value=0.039 Score=49.60 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=27.5
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.....++.+.|..|+||||+|..|+..+ .+.+++.|.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-----~~~~~~~d~ 48 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-----GFQLVHLDD 48 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-----CCCeecccc
Confidence 4456677778999999999999998763 344566653
No 243
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.74 E-value=0.043 Score=50.27 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
...+.++.|.+|+||||+...+...+...|++|+++..
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 34567778999999999999999999999999988854
No 244
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.73 E-value=0.034 Score=52.24 Aligned_cols=43 Identities=30% Similarity=0.462 Sum_probs=37.2
Q ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhh
Q 016417 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFA 136 (390)
Q Consensus 94 ~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g 136 (390)
+-|.+|+||||-+...-.-+...|++|.+|..||+. +++.-.+
T Consensus 7 VIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~ 50 (290)
T KOG1533|consen 7 VIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECA 50 (290)
T ss_pred EEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCc
Confidence 339999999999999999999999999999999986 6664433
No 245
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.70 E-value=0.025 Score=54.17 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=44.6
Q ss_pred cCccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCCeEEEecCCCCCC
Q 016417 71 AAPSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDPAHSL 131 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~------~g~~vll~d~D~~~~l 131 (390)
....++...+|+.+.++ ...|.-+.|.+|+|||.++..+|..... .+.+|+.||++-.-+.
T Consensus 18 ~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~ 86 (256)
T PF08423_consen 18 SRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP 86 (256)
T ss_dssp -EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H
T ss_pred CeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH
Confidence 34566778899988763 5567778899999999999999886542 2568999999754433
No 246
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.68 E-value=0.05 Score=54.34 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=44.1
Q ss_pred cCccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCCeEEEecCCC
Q 016417 71 AAPSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDPA 128 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~------~g~~vll~d~D~~ 128 (390)
.....+...+|+++.+ ....+..+.|.+|+|||+++..++...+. .+.+|+.||++-.
T Consensus 103 ~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 103 IQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred ceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 3456677788887775 35678888899999999999999876542 1238999999743
No 247
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.66 E-value=0.046 Score=59.00 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=38.2
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
....++++.|.+|+||||+|..++..|...|..+.++|.|--+
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r 500 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVR 500 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhh
Confidence 3567889999999999999999999998889999999998643
No 248
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.64 E-value=0.029 Score=46.89 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHC-----CCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-----GHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~-----g~~vll~d~ 125 (390)
+.++++.|+.|+|||+++.+++..+... ..+++.+++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC 45 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe
Confidence 4577888999999999999999988764 455666655
No 249
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.56 E-value=0.065 Score=52.26 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEEecCCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTDPAHS 130 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~d~D~~~~ 130 (390)
...++-+.|..|+||||++..+...+.+. +.+|.++..|..+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 45688889999999999998888777643 44799999997763
No 250
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.55 E-value=0.045 Score=45.49 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=25.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|..|+||||++..+|..+ |.+++-+|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccc
Confidence 3566999999999999999987 556666665
No 251
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=0.035 Score=55.60 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=42.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQ 137 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~ 137 (390)
...++++-|=.|+||||.+.-+|+.+.++|++++||=+|... ..-|-+.+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkq 150 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQ 150 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHH
Confidence 456778889999999999999999999999999999999754 55555554
No 252
>PLN02796 D-glycerate 3-kinase
Probab=94.48 E-value=0.054 Score=53.97 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
...++.++|..|+||||++..|...+...|.++..+..|-.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 34677888999999999999999999888888999988844
No 253
>PTZ00301 uridine kinase; Provisional
Probab=94.44 E-value=0.079 Score=49.21 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHH-CCC-CeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFAN-NGH-PTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~-~vll~d~D~~~ 129 (390)
..++-++|-+|+||||+|..++..+.. .|. .|.++..|-.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 367888899999999999999988754 343 46688888665
No 254
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.42 E-value=0.037 Score=50.49 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=27.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
++.++|.+|+||||+|..|+..+ ..+.+++.|-.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~----~~~~~i~~Ddf~ 35 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL----PNCCVIHQDDFF 35 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc----CCCeEEcccccc
Confidence 35667999999999999998876 258889888543
No 255
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.41 E-value=0.061 Score=54.93 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
...|+-++|..|+||||++..+...+...|.++..|+.|-..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 457888999999999999999988887788999999998544
No 256
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.40 E-value=0.035 Score=51.98 Aligned_cols=32 Identities=44% Similarity=0.554 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
..+++.|++|+||||+|.+++ .++++++.|-.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 346777999999999998873 47999999863
No 257
>PF13173 AAA_14: AAA domain
Probab=94.39 E-value=0.055 Score=45.75 Aligned_cols=37 Identities=35% Similarity=0.448 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.++++.|.-||||||++.+++..+. ...+++.++.|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~ 38 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFD 38 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccC
Confidence 35677779999999999999998777 56788899887
No 258
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.38 E-value=0.076 Score=51.49 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=45.1
Q ss_pred ccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 73 PSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 73 ~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
..++...+++.+-+ +..+|.=+.|..|+||||+|..++......|.++..||+.-.
T Consensus 42 i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~ 99 (279)
T COG0468 42 ISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHA 99 (279)
T ss_pred ccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 33444566666665 356788888999999999999999999999999999999643
No 259
>PRK06217 hypothetical protein; Validated
Probab=94.35 E-value=0.049 Score=49.06 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=24.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++.|-+|+||||+|..|+..+ |. -.+|+|-
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l---~~--~~~~~D~ 34 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL---DI--PHLDTDD 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CC--cEEEcCc
Confidence 5566999999999999999766 43 4688874
No 260
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.31 E-value=0.042 Score=53.26 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+.++++.|.+|+||||+|..++..+. ....+|.|-
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~ 36 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDD 36 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence 36788899999999999999887652 567888874
No 261
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.29 E-value=0.04 Score=48.34 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=24.9
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
++.|..|+||||+|..++..+ | ..++|.|.-
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~ 32 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL---G--AKFIEGDDL 32 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc---C--CeEEeCccc
Confidence 456999999999999999876 3 556788754
No 262
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=94.23 E-value=0.078 Score=49.30 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D 126 (390)
.++|+ |..|+|||+++..+...+. +.|.+++++|..
T Consensus 25 H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~ 61 (229)
T PF01935_consen 25 HIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPH 61 (229)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34443 9999999999999999999 889999999874
No 263
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.23 E-value=0.072 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=30.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+.+.+-.|.||||.|..+|...+.+|.+|+++=.
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 44455888999999999999999999999999865
No 264
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.19 E-value=0.061 Score=57.32 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~ 127 (390)
...++++.|-.|+||||+|..||..+.. .|+++.++|.|.
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~ 431 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDV 431 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcH
Confidence 3446777799999999999999999987 788899999984
No 265
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.99 E-value=0.1 Score=47.26 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
.+++++-|--|+||||++..|+..+...|+.+....
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~ 38 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTR 38 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEee
Confidence 367888899999999999999999998887666543
No 266
>PRK06851 hypothetical protein; Provisional
Probab=93.96 E-value=0.11 Score=52.41 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=35.1
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
...++++++.|.+|+||||+...++..+.++|++|.+.=+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4456778888999999999999999999999999988754
No 267
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.89 E-value=0.063 Score=51.30 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCC-C-CeEEEecCCCCCCchH
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNG-H-PTLVVSTDPAHSLSDS 134 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g-~-~vll~d~D~~~~l~~~ 134 (390)
....++.+.|-||+||||+|..++......+ + .+.-++.....+..+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~ 66 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQL 66 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccc
Confidence 5677888889999999999999997754332 2 4666777655554443
No 268
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=93.88 E-value=0.076 Score=54.45 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=30.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++-+.|+.|+||||+...|...|..+|+||.+|=.
T Consensus 3 Vi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH 37 (452)
T PRK14495 3 VYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKH 37 (452)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45556777999999999999999999999999743
No 269
>PRK13946 shikimate kinase; Provisional
Probab=93.80 E-value=0.069 Score=48.22 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++.|-.|+||||++..||..| |.+ ++|+|
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L---g~~--~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML---GLP--FLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCC--eECcC
Confidence 456667999999999999999887 555 67777
No 270
>PF13479 AAA_24: AAA domain
Probab=93.78 E-value=0.068 Score=49.54 Aligned_cols=36 Identities=36% Similarity=0.400 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCch
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSD 133 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~ 133 (390)
.-+++.|.+|+||||++..+ .+++++|+|.. .++..
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~ 40 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKF 40 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhh
Confidence 45566699999999998877 68999999876 34444
No 271
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=93.67 E-value=0.085 Score=54.61 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=32.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++|++-..||||||+++.|+..|.++|++|..+=.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 67888889999999999999999999999988854
No 272
>PRK06761 hypothetical protein; Provisional
Probab=93.60 E-value=0.084 Score=51.28 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEE-EecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLV-VSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll-~d~D~ 127 (390)
+.++++.|.+|+||||++..++..+...|.++-. .+.|+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 3578888999999999999999999888887765 45554
No 273
>PRK03839 putative kinase; Provisional
Probab=93.60 E-value=0.082 Score=47.26 Aligned_cols=30 Identities=37% Similarity=0.455 Sum_probs=23.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|-+|+||||++..||..+ | .-.+|+|
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~---~--~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL---G--YEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CcEEehh
Confidence 5556999999999999988876 3 4456766
No 274
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.59 E-value=0.076 Score=47.57 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=24.9
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEE
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLV 122 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll 122 (390)
+++.|+.|+||||+...+...+...|.++.=
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G 32 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGG 32 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccce
Confidence 4567999999999999999999887776543
No 275
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.57 E-value=0.1 Score=46.18 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=29.5
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.....++++.|..|+|||++...+...+...+.-++.++++..+
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~ 64 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSE 64 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccc
Confidence 34557888889999999999999999888875557777877663
No 276
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.56 E-value=0.13 Score=50.35 Aligned_cols=35 Identities=34% Similarity=0.578 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...+++++|..|+||||+|..||..+ |.. .++.+|
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D 125 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTD 125 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEech
Confidence 44688899999999999999999887 555 366677
No 277
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.53 E-value=0.082 Score=54.69 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=32.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
-+++.|..|+|||+++.+++..+.+.|.+|+.++++
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 345569999999999999999999999999999875
No 278
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.49 E-value=0.12 Score=50.96 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=42.9
Q ss_pred CccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHH---CC---CCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFAN---NG---HPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~---~g---~~vll~d~D~~ 128 (390)
....+...+|+++.+. ...+..+.|.+|+||||++..++...+. .| .+|+.||+...
T Consensus 77 ~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 77 QLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred eeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 3556777888877753 5678888899999999999999874432 33 48999999753
No 279
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.45 E-value=0.1 Score=52.18 Aligned_cols=38 Identities=26% Similarity=0.481 Sum_probs=33.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHH--HHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKF--ANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~--a~~g~~vll~d~D 126 (390)
|.++++.|-+|+|||.++.+++..+ ...+.+++++...
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n 40 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGN 40 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEec
Confidence 4688899999999999999999999 7788888877764
No 280
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=93.45 E-value=0.098 Score=56.56 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
.++++.|.+|+||||+.+.+...+.++|.+||++.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 46678899999999999999999999999999986
No 281
>PRK07933 thymidylate kinase; Validated
Probab=93.44 E-value=0.12 Score=48.09 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=32.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++++-|--|+||||++..|+.+|..+|++|.++.-
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~ 36 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAF 36 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 67788999999999999999999999999998876
No 282
>PRK12338 hypothetical protein; Provisional
Probab=93.33 E-value=0.09 Score=51.89 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++++|.+|+||||+|..+|..+ |.+ .++++|
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l---~~~-~~~~tD 37 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL---NIK-HLIETD 37 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC---CCe-EEccCh
Confidence 3688889999999999999998876 443 365776
No 283
>PRK00784 cobyric acid synthase; Provisional
Probab=93.31 E-value=0.11 Score=54.43 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEE
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVV 123 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~ 123 (390)
+.++|++-..|||||++++.|+..|.++|++|..+
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~ 37 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPF 37 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecc
Confidence 56888889999999999999999999999988865
No 284
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.26 E-value=0.07 Score=45.44 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=24.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++++|..|+||||+|..||..+ | .-++|.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~---~--~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL---G--LPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---C--Cceeccc
Confidence 46778999999999999998765 3 3356665
No 285
>PRK08118 topology modulation protein; Reviewed
Probab=93.25 E-value=0.075 Score=47.40 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=17.4
Q ss_pred EEcCCCCCcHHHHHHHHHHHH
Q 016417 93 MLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~ 113 (390)
++.|.+|+||||+|..|+..+
T Consensus 5 ~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 5 ILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 334999999999999998765
No 286
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.18 E-value=0.086 Score=47.06 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=25.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++++++|-+|+||||+|-.|+..+ +...+-++.|
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~---~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL---AEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh---CCCccccCcc
Confidence 578889999999999999997765 2233444555
No 287
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.17 E-value=0.12 Score=45.94 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.|+-+.|.-++||||+.-.+...|.++|+||.+|=.+
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 3555669999999999999999999999999999653
No 288
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.17 E-value=0.1 Score=53.15 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~d~D 126 (390)
.+++.|+.|+|||+++.+++..+.+. |.+|+.++++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 46677999999999999999999887 7889999875
No 289
>PRK07261 topology modulation protein; Provisional
Probab=93.11 E-value=0.1 Score=46.58 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=17.0
Q ss_pred EEcCCCCCcHHHHHHHHHHHH
Q 016417 93 MLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~ 113 (390)
++.|.+|+||||+|..|+..+
T Consensus 4 ~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 4 AIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 344999999999999987543
No 290
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=93.09 E-value=0.23 Score=47.87 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCC--eEEEecCCCCCCchHhh
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHP--TLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~--vll~d~D~~~~l~~~~g 136 (390)
..+.|+-..|..||||||+|-.+...+++.+.. |-+|.+|-.|--..+|.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~ 131 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLD 131 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhh
Confidence 466788889999999999999999999998775 99999998775555554
No 291
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.07 E-value=0.17 Score=46.33 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=26.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~ 125 (390)
++++.|..|+||||+..+++..+... +.+++.++-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 56778999999999999988887755 334444443
No 292
>PRK13973 thymidylate kinase; Provisional
Probab=93.05 E-value=0.17 Score=46.88 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+.++++=|--|+||||.+..|+.+|...|++|..+.-
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~ 39 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTRE 39 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4688889999999999999999999999998876643
No 293
>PLN02924 thymidylate kinase
Probab=92.98 E-value=0.18 Score=47.11 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
...++++-|--|+||||.+..|+..+..+|++|.++.-
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~e 52 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRF 52 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeC
Confidence 45688889999999999999999999999999866543
No 294
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=92.98 E-value=0.19 Score=51.57 Aligned_cols=56 Identities=23% Similarity=0.466 Sum_probs=42.9
Q ss_pred cCccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CCeEEEecC
Q 016417 71 AAPSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNG-HPTLVVSTD 126 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g-~~vll~d~D 126 (390)
.....+...++.+..+ ...-+++..+.+|.|||++|.|+|..+|... .+|++++..
T Consensus 177 ~Gi~tgf~~LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLE 234 (435)
T COG0305 177 IGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLE 234 (435)
T ss_pred cccccCchhhHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 4445566677777776 3556888999999999999999999999854 456777664
No 295
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.98 E-value=0.075 Score=47.45 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=22.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|.+|+||||+|..||..+ | +..+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~---~--~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF---G--FTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CeEEEC
Confidence 5667999999999999998765 3 455554
No 296
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.83 E-value=0.1 Score=53.56 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=38.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
..-++.+.|-.||||||--+-+|++|.+.+.|||+.-+|+..
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFR 418 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFR 418 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchh
Confidence 445777789999999999999999999999999999999865
No 297
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.82 E-value=0.12 Score=50.09 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=27.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCC----CeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGH----PTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~----~vll~d~ 125 (390)
-+++.|.+|+||||+|..+|..+.+.|. .+..++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 3556699999999999999999988775 3444543
No 298
>PLN02165 adenylate isopentenyltransferase
Probab=92.75 E-value=0.14 Score=50.90 Aligned_cols=38 Identities=26% Similarity=0.515 Sum_probs=28.9
Q ss_pred hhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 84 ~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.+....++++.|..|+||||+|..||..+ ..-+|++|
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l-----~~eIIsaD 75 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF-----PSEIINSD 75 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc-----CCceecCC
Confidence 344555577788999999999999988765 23577777
No 299
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.72 E-value=0.15 Score=47.64 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=33.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
.+++-++|-+|+||||+|..|...|-.. ++.++..|-...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk 47 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYK 47 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeecccccc
Confidence 3788889999999999999999888655 899999987654
No 300
>PLN02348 phosphoribulokinase
Probab=92.65 E-value=0.22 Score=50.42 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=36.8
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCC---------------CCeEEEecCCCCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNG---------------HPTLVVSTDPAHSL 131 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g---------------~~vll~d~D~~~~l 131 (390)
....++-+.|-.|+||||+|..|+..|...+ ..+.+|..|-.|..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~ 106 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSL 106 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCC
Confidence 4567888999999999999999999996542 46889999977754
No 301
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=92.62 E-value=0.14 Score=47.49 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=35.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
-.++.|..|+||||.+.++-.+...-|+++.+|..||+.
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa 43 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA 43 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHH
Confidence 345669999999999999999999999999999999975
No 302
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=92.61 E-value=0.53 Score=44.44 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=30.0
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCcc
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~ 330 (390)
+.+++|.....-.-..++++++.+++.|+|+. +|+||+=
T Consensus 89 D~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D 127 (237)
T cd04168 89 DGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKID 127 (237)
T ss_pred CeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECcc
Confidence 46677776665555678899999999999874 8999974
No 303
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.53 E-value=0.11 Score=42.54 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHC
Q 016417 93 MLGGKGGVGKTSCAASLAVKFANN 116 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~a~~ 116 (390)
.+.|++|+|||+++..|+..+.+.
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 466999999999999999988865
No 304
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.52 E-value=0.21 Score=40.89 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=25.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEE
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANN--GHPTLVV 123 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~ 123 (390)
+++.|..|+|||+++..++..+... ..+++++
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~ 36 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVL 36 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEE
Confidence 4566999999999999999988874 3456655
No 305
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.48 E-value=0.13 Score=53.05 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=31.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~d~D 126 (390)
-+++.|+.|+|||+++.++|..+.+. |.+|+.++++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 46677999999999999999999887 7889999875
No 306
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.47 E-value=0.35 Score=44.40 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=36.4
Q ss_pred hhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 83 ~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
.+...+..++.+.|-.|+||||+-..++..+. .+.+|.++..|+..+
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~ 62 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITK 62 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCc
Confidence 34444567777889999999999999988764 457999999887543
No 307
>PRK13947 shikimate kinase; Provisional
Probab=92.42 E-value=0.14 Score=45.08 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=24.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++.|-+|+||||++..||..| |.+ ++|.|.
T Consensus 4 I~l~G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 4556999999999999998876 544 477764
No 308
>CHL00181 cbbX CbbX; Provisional
Probab=92.42 E-value=0.15 Score=49.60 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGH 118 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~ 118 (390)
+++.|.+|+||||+|..+|..+...|.
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 566799999999999999999887665
No 309
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.42 E-value=0.12 Score=49.21 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNG 117 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g 117 (390)
+++.|.+|+||||+|..+|..+...|
T Consensus 45 vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 45569999999999999999887655
No 310
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=92.41 E-value=0.17 Score=50.24 Aligned_cols=31 Identities=35% Similarity=0.431 Sum_probs=28.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 96 gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+-||+|||+++..|+..+.++|++|.+++=.
T Consensus 58 ~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 58 TVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred eCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 5699999999999999999999999999854
No 311
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.40 E-value=0.17 Score=45.33 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=25.9
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|..|+|||++|..++.. .|.+++++.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc
Confidence 466799999999999999865 6778888866
No 312
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=92.36 E-value=0.25 Score=46.30 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=36.8
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCC
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 332 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~ 332 (390)
..+++|+....-.+..+.-..+.++..|+++.|+|+|++.+.
T Consensus 136 ~pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~~~~~ 177 (231)
T PRK12374 136 LPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPG 177 (231)
T ss_pred CCEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeCccCc
Confidence 358999988877799999999999999999999999998653
No 313
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=92.27 E-value=0.14 Score=52.54 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=27.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
-+++.|.+|.||||+|+++|-.++.+|+=|-=++
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmE 298 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQGKIVKTME 298 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHHhcCcEEeecc
Confidence 3445699999999999999999999998443333
No 314
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.20 E-value=0.15 Score=52.66 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=30.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~d~D 126 (390)
+++.|..|+|||+++.++|..+.+. +.+|+.++++
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 6677999999999999999998875 5789999875
No 315
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=92.18 E-value=0.22 Score=50.09 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..++-+.|..|+||||+...+...|.++|++|.+|-.|.
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 447777799999999999999999999999999998753
No 316
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.15 E-value=0.18 Score=45.17 Aligned_cols=30 Identities=37% Similarity=0.395 Sum_probs=22.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|.+|+||||+|..||..+ .+..+++|
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-----GLPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEECc
Confidence 3455999999999999998764 34556653
No 317
>PLN02200 adenylate kinase family protein
Probab=92.15 E-value=0.15 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
..++++.|.+|+||||+|..||..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4677888999999999999998755
No 318
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.12 Score=50.95 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC----CCCeEEEecCCCCCCchHhhc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN----GHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~----g~~vll~d~D~~~~l~~~~g~ 137 (390)
-++++..-|.+|+|||+++-+||+.|.-+ -++..+|+.....=.+.||+.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE 229 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE 229 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh
Confidence 56788899999999999999999998743 236667776544455667763
No 319
>PRK14532 adenylate kinase; Provisional
Probab=92.09 E-value=0.16 Score=45.58 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=21.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|.+|+||||+|..||..+ | ...+|+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~---g--~~~is~ 31 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER---G--MVQLST 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CeEEeC
Confidence 4556999999999999997544 3 445555
No 320
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=92.08 E-value=0.17 Score=49.85 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+.++++.|..|+||||+|..||..+ .+.+|++|.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRL-----NGEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence 4678888999999999999998765 456788884
No 321
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.02 E-value=0.16 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++++.|.+|+||||++..++..+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 456667889999999999998765
No 322
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.01 E-value=0.21 Score=49.44 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=37.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcc
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~ 138 (390)
+++.|..|+||||++..+|..+ |.+..-|.+++.-+..|++|..
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCc
Confidence 4445999999999999999877 6788899998888888888864
No 323
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=92.00 E-value=0.84 Score=43.99 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=32.1
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccC
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 331 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p 331 (390)
+.+++|..+..-.-..+++++..+.+.|+|+. +++||+=-
T Consensus 89 D~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~ 128 (270)
T cd01886 89 DGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDR 128 (270)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 46788887766566778899999999999985 89999743
No 324
>PRK06851 hypothetical protein; Provisional
Probab=91.98 E-value=0.33 Score=48.95 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEE--ecCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVV--STDP 127 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~--d~D~ 127 (390)
..++++++.|.+|+||||+...++..+.+.|+.|-.+ ..|+
T Consensus 28 ~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 28 GANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 4567888899999999999999999999999987665 5554
No 325
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.97 E-value=0.17 Score=48.32 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+..++++|..|+||||+..++...+-..+.+++.++-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd 163 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED 163 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence 36778888999999999999998877777678888884
No 326
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=91.87 E-value=0.16 Score=51.20 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=27.1
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHH
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~ 112 (390)
.+..+++...---+++.|.+|+||||+|..+|..
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence 4555666666667788899999999999999874
No 327
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=91.82 E-value=0.19 Score=46.48 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGH 118 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~ 118 (390)
...++++.|+-|+|||.+|.+.|..+...|.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~ 48 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGE 48 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCC
Confidence 3457788899999999999999998888765
No 328
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.75 E-value=0.12 Score=48.42 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=23.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
-+++.|.+|+||||+|.-+|..+ |.....+++
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg 83 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANEL---GVNFKITSG 83 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHC---T--EEEEEC
T ss_pred eEEEECCCccchhHHHHHHHhcc---CCCeEeccc
Confidence 46777999999999999888755 445555655
No 329
>PRK14527 adenylate kinase; Provisional
Probab=91.72 E-value=0.18 Score=45.69 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
..++++.|.+|+||||+|..||..+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567777999999999999997655
No 330
>PLN03025 replication factor C subunit; Provisional
Probab=91.71 E-value=0.27 Score=48.37 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=32.0
Q ss_pred hhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+..++.+....-+++.|..|+||||++..+|..+-..++...+++.+.
T Consensus 25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 333444332223567899999999999999999876655544555443
No 331
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.66 E-value=0.2 Score=43.10 Aligned_cols=30 Identities=40% Similarity=0.516 Sum_probs=23.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|-.|+||||+|..+|..+ |.+ .+|.|
T Consensus 2 i~l~G~~GsGKstla~~la~~l---~~~--~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL---GLP--FVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCC--EEEch
Confidence 3455999999999999998876 444 55666
No 332
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=91.65 E-value=0.19 Score=50.46 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
..++++.+.|.+|+||||+|.+|+..+.+
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35788889999999999999999998876
No 333
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.59 E-value=0.22 Score=46.44 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=29.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH--CCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~--~g~~vll~d~D 126 (390)
.+++.|+.|+|||++..+++..+.+ .+.+|+.++++
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 3566799999999999999998876 47899999875
No 334
>PRK04040 adenylate kinase; Provisional
Probab=91.49 E-value=0.2 Score=45.68 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
+++++.|-+|+||||++..++..+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4677789999999999999998874
No 335
>PRK13948 shikimate kinase; Provisional
Probab=91.44 E-value=0.27 Score=44.60 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++.|-.|+||||++..||..+ |.+ ++|+|
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~l---g~~--~iD~D 42 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRAL---MLH--FIDTD 42 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCC--EEECC
Confidence 455566999999999999988776 444 45998
No 336
>PRK08356 hypothetical protein; Provisional
Probab=91.40 E-value=0.2 Score=45.59 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHP 119 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~ 119 (390)
...+++++|++|+||||+|-.|. +.|..
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~----~~g~~ 31 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE----EKGFC 31 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH----HCCCc
Confidence 34577888999999999998883 35665
No 337
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=91.40 E-value=2 Score=39.23 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=33.1
Q ss_pred CceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCcc
Q 016417 290 STEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII 330 (390)
Q Consensus 290 ~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~ 330 (390)
.+.+++|..+..-.-.++++.+..+.+.|++..-+++|++=
T Consensus 89 ~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D 129 (195)
T cd01884 89 MDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKAD 129 (195)
T ss_pred CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 35778888887666678889999999999986668899974
No 338
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.27 E-value=0.39 Score=48.33 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCC--CCeEEEecCCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNG--HPTLVVSTDPAHS 130 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g--~~vll~d~D~~~~ 130 (390)
..+++.|.+|+|||+++-.++..+.+.+ ..+..+++....+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 4467789999999999999999988765 5677777654433
No 339
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.25 E-value=0.16 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++++.|+.|+||||++..|+..+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 467777999999999988887743
No 340
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.25 E-value=0.19 Score=47.88 Aligned_cols=35 Identities=40% Similarity=0.646 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...|++.+|-.||||||+|.-+|..| |. .-++++|
T Consensus 88 ~p~IILIGGasGVGkStIA~ElA~rL---gI-~~visTD 122 (299)
T COG2074 88 RPLIILIGGASGVGKSTIAGELARRL---GI-RSVISTD 122 (299)
T ss_pred CCeEEEecCCCCCChhHHHHHHHHHc---CC-ceeecch
Confidence 46899999999999999999998866 32 3456666
No 341
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.21 E-value=0.19 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
++++.|..|+||||++-.|+..+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5677899999999999998887643
No 342
>PRK01184 hypothetical protein; Provisional
Probab=91.19 E-value=0.25 Score=44.26 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.++++.|..|+||||++. + +.+.|..+ +|+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~---~~~~g~~~--i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-I---AREMGIPV--VVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-H---HHHcCCcE--EEh
Confidence 467778999999999864 3 34556544 554
No 343
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=91.15 E-value=0.31 Score=43.68 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D 126 (390)
+..+++.|..|||||.+|-.+|..+- ....+.+.+|+-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s 41 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMS 41 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhh
Confidence 45677789999999999999999988 566678888874
No 344
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=91.15 E-value=0.4 Score=47.74 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 96 gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
|.--+||||++--|--...++|++.+.+|.|+..+
T Consensus 110 Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~ 144 (415)
T KOG2749|consen 110 GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG 144 (415)
T ss_pred CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence 88899999999999999999999999999998754
No 345
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.14 E-value=0.25 Score=48.33 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~d~ 125 (390)
+.-++++|..|+||||+..++...+... +.+++.++-
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd 170 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIED 170 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECC
Confidence 3455678999999999999999887764 678877763
No 346
>PRK13764 ATPase; Provisional
Probab=91.05 E-value=0.26 Score=52.71 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
..++++|..|+||||++.+++..+...|+.|.-++
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE 292 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME 292 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence 44677899999999999999999988887665554
No 347
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.03 E-value=0.27 Score=43.95 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=24.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.+++.|..|+||||++..+|..+ | .-++|+|-
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l---~--~~~vd~D~ 37 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc---C--CcEEECCc
Confidence 35555999999999999998865 3 44677773
No 348
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.95 E-value=0.32 Score=47.63 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=31.0
Q ss_pred hhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCC--CCeEEEec
Q 016417 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNG--HPTLVVST 125 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g--~~vll~d~ 125 (390)
+...+.......+++.|..|+||||++..++..+...+ .++..+++
T Consensus 27 L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 27 LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 33344443322456789999999999999999886554 34566654
No 349
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=90.84 E-value=0.27 Score=44.26 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeE
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTL 121 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vl 121 (390)
.+.+.|-+||||||+|-.|+ ..|+++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH----HhCCcee
Confidence 34566999999999998877 4455543
No 350
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=90.84 E-value=0.26 Score=49.16 Aligned_cols=29 Identities=34% Similarity=0.445 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 98 GGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 98 gGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
||+|||-++..||..+.++|+++.+++=.
T Consensus 67 GGTGKTP~v~~La~~l~~~G~~~~IlSRG 95 (338)
T PRK01906 67 GGTGKTPTVIALVDALRAAGFTPGVVSRG 95 (338)
T ss_pred CCCChHHHHHHHHHHHHHcCCceEEEecC
Confidence 99999999999999999999999999854
No 351
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.80 E-value=0.3 Score=43.10 Aligned_cols=30 Identities=40% Similarity=0.542 Sum_probs=23.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|-.|+||||++..||..+ |. -++|.|
T Consensus 5 i~~~G~~GsGKst~~~~la~~l---g~--~~~d~D 34 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQAL---GY--RFVDTD 34 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--CEEEcc
Confidence 4445999999999999999876 44 456776
No 352
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=90.79 E-value=2.6 Score=40.15 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=33.0
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCC
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 332 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~ 332 (390)
+.+++|..+..-....+.++++.+...++|+. +|+||+-..
T Consensus 89 D~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~ 129 (268)
T cd04170 89 DAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRE 129 (268)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccC
Confidence 57888988887777788889999999998754 689997544
No 353
>COG2403 Predicted GTPase [General function prediction only]
Probab=90.69 E-value=0.44 Score=47.70 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=37.8
Q ss_pred hhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 83 ~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++......+.+++-.-|+|||+++..+|..|.++|+++++|-.
T Consensus 121 ~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 121 MLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred hhhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 3434567888998899999999999999999999999999987
No 354
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=90.69 E-value=0.4 Score=51.51 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++-+.|+.|+||||+...|...|.++|+||.+|-.|
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~ 47 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHA 47 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcC
Confidence 45667779999999999999999999999999999874
No 355
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.67 E-value=0.29 Score=47.05 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
.+.+++++|..|+||||+..++...+...+.+++.++
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 4457888899999999999988877766666777765
No 356
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=90.66 E-value=0.23 Score=48.92 Aligned_cols=37 Identities=27% Similarity=0.209 Sum_probs=30.8
Q ss_pred cEEEEEcC-CCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 89 RKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~g-kgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+|.|-|= -||+|||.++..|+..|.++|+++.+++=
T Consensus 29 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSR 66 (311)
T TIGR00682 29 PVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSR 66 (311)
T ss_pred CEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECC
Confidence 35555332 39999999999999999999999999985
No 357
>PRK14531 adenylate kinase; Provisional
Probab=90.56 E-value=0.27 Score=44.21 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=18.7
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.|.+|+||||++..||..+
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4556999999999999998865
No 358
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=90.47 E-value=0.33 Score=48.85 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=37.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC------C-CC-CCchHhhcccC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD------P-AH-SLSDSFAQDLT 140 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D------~-~~-~l~~~~g~~~~ 140 (390)
....++++|.||+|||++--.+-..+...|..|+++-.= . .+ ++..+|+.+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCcccc
Confidence 445678889999999999999988887777777665321 1 22 56666766543
No 359
>PRK14528 adenylate kinase; Provisional
Probab=90.45 E-value=0.34 Score=43.88 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.|.+|+||||+|..++..+
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4556999999999999987665
No 360
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.45 E-value=0.3 Score=52.32 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=31.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH--CCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~--~g~~vll~d~D 126 (390)
-+++.|+.|+|||+++.+++..+.+ .|++|+.++++
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae 353 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE 353 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3677799999999999999999876 48999999985
No 361
>PRK13695 putative NTPase; Provisional
Probab=90.44 E-value=0.43 Score=42.42 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeE
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTL 121 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vl 121 (390)
+++.|.+|+||||+...++..+...|.++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 344599999999999999888877787754
No 362
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=90.39 E-value=0.48 Score=46.22 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=36.0
Q ss_pred hhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 84 ~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
+...+..++-+.|.+|+||||+...+...+... .++.++..|...
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t 143 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQT 143 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCc
Confidence 444556677778999999999999999888655 589999988654
No 363
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.31 E-value=0.48 Score=48.66 Aligned_cols=41 Identities=32% Similarity=0.435 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHH-HC-CCCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFA-NN-GHPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a-~~-g~~vll~d~D~~~ 129 (390)
..++.+-|..|+||||+.+-||..+. .. +.++.++.+|...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 34566669999999999999987654 33 3688888888643
No 364
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.29 E-value=0.37 Score=35.89 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
+.++.|+.|+||||+--++-+.|-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 567779999999999888776553
No 365
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=90.29 E-value=0.4 Score=44.27 Aligned_cols=31 Identities=32% Similarity=0.293 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++-+.|+.|+||||+|--+ ++ ..+.++|+|
T Consensus 3 ~iIglTG~igsGKStva~~~----~~--~G~~vidaD 33 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKIL----AE--LGFPVIDAD 33 (201)
T ss_pred eEEEEecCCCCCHHHHHHHH----HH--cCCeEEEcc
Confidence 46666799999999988554 33 346778888
No 366
>PRK00625 shikimate kinase; Provisional
Probab=90.25 E-value=0.29 Score=43.96 Aligned_cols=30 Identities=37% Similarity=0.347 Sum_probs=23.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|-.|+||||++-.+|..+ | .-.+|+|
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l---~--~~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL---S--LPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CCEEEhh
Confidence 4555999999999999998776 3 4456776
No 367
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=90.22 E-value=0.31 Score=43.73 Aligned_cols=29 Identities=34% Similarity=0.359 Sum_probs=22.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.+.|..|+||||++..++. .|. .++|+|
T Consensus 2 i~itG~~gsGKst~~~~l~~----~g~--~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE----LGI--PVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH----CCC--CEEecC
Confidence 56679999999999988765 454 457776
No 368
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=90.20 E-value=0.31 Score=44.50 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHH----CCCCeEEEec
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN----NGHPTLVVST 125 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~----~g~~vll~d~ 125 (390)
.+.+++ |..|+|||++..+++..++. ...++.++|.
T Consensus 39 ~h~li~--G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~ 78 (205)
T PF01580_consen 39 PHLLIA--GATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDP 78 (205)
T ss_dssp -SEEEE----TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-T
T ss_pred ceEEEE--cCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcC
Confidence 344444 99999999999999999998 3444555554
No 369
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=90.18 E-value=0.67 Score=42.50 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
..+-++|..|+|||++-..+-..|..+ +++.+|..|...
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t 52 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT 52 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec
Confidence 677788999999999999999999888 999999999765
No 370
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=90.18 E-value=0.42 Score=49.54 Aligned_cols=36 Identities=42% Similarity=0.621 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...+++++|-+|+||||+|..+|..+ |. +.++++|.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l---g~-~~ii~tD~ 289 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL---GI-TRIVSTDA 289 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CC-cEEeehhH
Confidence 46888999999999999999988765 32 34777774
No 371
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.13 E-value=0.44 Score=46.19 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=34.5
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.+..++.......+++.|..|+||||++..++..+...+.+..+++.+.
T Consensus 28 ~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 28 RLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 3444444433333577899999999999999999887776655666543
No 372
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=90.05 E-value=0.25 Score=45.48 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=17.2
Q ss_pred EEcCCCCCcHHHHHHHHHHHH
Q 016417 93 MLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~ 113 (390)
++.|.+|+||||+|..||..+
T Consensus 3 ~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 3 VLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 445999999999999987644
No 373
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=89.93 E-value=0.28 Score=44.34 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=16.8
Q ss_pred EcCCCCCcHHHHHHHHHHH
Q 016417 94 LGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 94 ~~gkgGvGKtt~a~~la~~ 112 (390)
+.|-+|+||||+|..||..
T Consensus 5 ilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 5 ILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3499999999999999886
No 374
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=89.90 E-value=0.41 Score=43.80 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=23.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++.+.|..|+||||++..++..+ |. .++|+|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~---g~--~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQK---GI--PILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---CC--eEeeCc
Confidence 56677999999999998877532 54 445887
No 375
>PRK02496 adk adenylate kinase; Provisional
Probab=89.88 E-value=0.34 Score=43.40 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=18.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.|.+|+||||+|..||..+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4445999999999999998765
No 376
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=89.87 E-value=0.29 Score=44.50 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~ 112 (390)
...+++++|+.||||||+...|-..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3578999999999999999877543
No 377
>PRK14530 adenylate kinase; Provisional
Probab=89.82 E-value=0.31 Score=44.96 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=18.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.|.+|+||||++..||..+
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4445999999999999998776
No 378
>PRK13975 thymidylate kinase; Provisional
Probab=89.81 E-value=0.36 Score=43.52 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
.++++-|-.|+||||++..|+..+-
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788889999999999999999883
No 379
>PRK04195 replication factor C large subunit; Provisional
Probab=89.78 E-value=0.45 Score=49.68 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...+++.|..|+||||++.++|..+ |..++-+++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el---~~~~ielnas 73 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY---GWEVIELNAS 73 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEccc
Confidence 5677788999999999999998865 6777777653
No 380
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=89.73 E-value=0.29 Score=42.91 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=15.4
Q ss_pred EEcCCCCCcHHHHHHHHHHH
Q 016417 93 MLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~ 112 (390)
++.|-.|+||||++..|+..
T Consensus 3 ~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 3 VITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEE--TTSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHc
Confidence 45588999999999999866
No 381
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=89.69 E-value=0.55 Score=50.62 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.++.+++ |..|+|||++...++....+.|..|.++|-+-..
T Consensus 180 ~gHtlV~--GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~ 220 (643)
T TIGR03754 180 VGHTLVL--GTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDA 220 (643)
T ss_pred cCceEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 4566666 9999999999999999999999999999877543
No 382
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=89.68 E-value=0.33 Score=44.80 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=33.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHC--C-CCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANN--G-HPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~--g-~~vll~d~D 126 (390)
.-++.+||..|+||||++.++-..+.+. + +.+.-++.|
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvD 71 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVD 71 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEec
Confidence 5799999999999999999999998876 3 478888887
No 383
>PRK04182 cytidylate kinase; Provisional
Probab=89.62 E-value=0.3 Score=43.04 Aligned_cols=30 Identities=40% Similarity=0.459 Sum_probs=23.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++++.|-.|+||||++..||..+ |. -++|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l---g~--~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL---GL--KHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CC--cEecH
Confidence 56777999999999999998765 44 35564
No 384
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=89.57 E-value=0.62 Score=46.92 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++-+.|..|+||||++..+...|..+ ++|.++..+
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~ 41 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG 41 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence 3566677999999999999999999999 999999753
No 385
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.54 E-value=0.54 Score=45.59 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=24.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++.|..|+|||+++.++|..+ +.++..++..+
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~ 65 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPA 65 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEeccch
Confidence 5667999999999999998766 34555555443
No 386
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=89.53 E-value=0.33 Score=48.22 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 98 GGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 98 gGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
||+|||-++..|+..|.++|+++.+++=.
T Consensus 46 GGTGKTP~v~~L~~~L~~~G~~~~IlSRG 74 (326)
T PF02606_consen 46 GGTGKTPLVIWLARLLQARGYRPAILSRG 74 (326)
T ss_pred CCCCchHHHHHHHHHHHhcCCceEEEcCC
Confidence 99999999999999999999999999863
No 387
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=89.51 E-value=0.68 Score=42.98 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=33.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
..++++=|-=|+||||.+..|+..|..+|.+|++.--
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trE 39 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTRE 39 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4688888999999999999999999999998887755
No 388
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=89.40 E-value=0.33 Score=43.68 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=27.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC------CCCCCchHhh
Q 016417 95 GGKGGVGKTSCAASLAVKFANNGHPTLVVSTD------PAHSLSDSFA 136 (390)
Q Consensus 95 ~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D------~~~~l~~~~g 136 (390)
-|--|+||||+.-.||..| ..-++|+| ...+++++|.
T Consensus 8 iG~mGaGKSTIGr~LAk~L-----~~~F~D~D~~Ie~~~g~sI~eIF~ 50 (172)
T COG0703 8 IGFMGAGKSTIGRALAKAL-----NLPFIDTDQEIEKRTGMSIAEIFE 50 (172)
T ss_pred EcCCCCCHhHHHHHHHHHc-----CCCcccchHHHHHHHCcCHHHHHH
Confidence 3999999999999998876 45578888 2345555554
No 389
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=89.40 E-value=0.33 Score=44.22 Aligned_cols=34 Identities=29% Similarity=0.529 Sum_probs=21.0
Q ss_pred EEEEcCCCCCcHHHHHHHH-HHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASL-AVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~l-a~~~a~~g~~vll~d~ 125 (390)
|.++.|++|+|||..|+.. .....+.|++|.. ..
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni 36 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NI 36 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-cc
Confidence 5677899999999999988 6666677766654 54
No 390
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=89.40 E-value=0.49 Score=52.76 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=37.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHh
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSF 135 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~ 135 (390)
.+.+++ |+.|+||||+...+...+...|.+|.++|.+.. ..+...+
T Consensus 439 ~N~~I~--G~sGsGKS~l~~~l~~~~~~~g~~vviiD~g~sy~~l~~~l 485 (829)
T TIGR03783 439 RNKFIL--GPSGSGKSFFTNHLVRQYYEQGTHILLVDTGNSYQGLCELI 485 (829)
T ss_pred CceEEE--CCCCCCHHHHHHHHHHHHHhcCCEEEEECCCccHHHHHHHh
Confidence 444555 999999999999999999999999999998754 3555666
No 391
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=89.37 E-value=0.31 Score=42.95 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=15.3
Q ss_pred cCCCCCcHHHHHHHHHH
Q 016417 95 GGKGGVGKTSCAASLAV 111 (390)
Q Consensus 95 ~gkgGvGKtt~a~~la~ 111 (390)
.|-+|+||||++..+|-
T Consensus 13 tGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 13 TGTPGTGKSTLAERLAE 29 (176)
T ss_pred eCCCCCCchhHHHHHHH
Confidence 39999999999999984
No 392
>PRK00279 adk adenylate kinase; Reviewed
Probab=89.33 E-value=0.33 Score=44.83 Aligned_cols=29 Identities=34% Similarity=0.382 Sum_probs=21.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|.+|+||||+|..||..+ .+..+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~-----~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY-----GIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCcEEEC
Confidence 4456899999999999887654 3455554
No 393
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=89.14 E-value=0.5 Score=46.76 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=41.4
Q ss_pred cccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC--CchHhhccc
Q 016417 74 SEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS--LSDSFAQDL 139 (390)
Q Consensus 74 ~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~--l~~~~g~~~ 139 (390)
.++...++..+. + +..+++-+.|..|+||||++..+...+.+.|..+++||.+-..+ ....+|.+.
T Consensus 35 ~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl 105 (322)
T PF00154_consen 35 STGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDL 105 (322)
T ss_dssp --S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--G
T ss_pred ecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccc
Confidence 344455665555 2 23446656688999999999999988888999999999965432 233445544
No 394
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.11 E-value=0.31 Score=46.14 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
..++++.|.+|+||||++..++..+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 346677799999999999999877653
No 395
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=89.07 E-value=0.61 Score=43.00 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++.+.|..|+||||++..++. .| .-++|+|
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~----~g--~~v~d~D 36 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE----MG--CELFEAD 36 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----CC--CeEEecc
Confidence 35667789999999999987764 35 4667887
No 396
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=88.86 E-value=0.46 Score=42.54 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=23.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++++.|..|+||||+|..++..+ |.+++.+.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcC
Confidence 46677999999999999987653 445555544
No 397
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.84 E-value=0.44 Score=49.37 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=30.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH--CCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~--~g~~vll~d~D 126 (390)
-+++.|..|+|||+++.+++..+.+ .|.+|+.++++
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 3566799999999999999998764 47899999875
No 398
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=88.79 E-value=0.62 Score=42.45 Aligned_cols=31 Identities=32% Similarity=0.345 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++.+.|.-|+||||++..++. .| .-++|+|
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~----~g--~~~i~~D 33 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE----LG--APVIDAD 33 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cC--CEEEEec
Confidence 4567779999999999987765 35 5678887
No 399
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=88.74 E-value=0.82 Score=43.77 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCC----CCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNG----HPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g----~~vll~d~D 126 (390)
.+-++|. |-.|+||||+.+.....+...+ .++++++.-
T Consensus 13 ~~~~lV~-a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft 54 (315)
T PF00580_consen 13 EGPLLVN-AGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFT 54 (315)
T ss_dssp SSEEEEE-E-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESS
T ss_pred CCCEEEE-eCCCCCchHHHHHHHHHhhccccCChHHheecccC
Confidence 3445555 4499999999988877777765 478888853
No 400
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=88.63 E-value=0.44 Score=42.93 Aligned_cols=30 Identities=37% Similarity=0.309 Sum_probs=22.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.+.|..|+||||++..++.. | ..-++|+|
T Consensus 2 i~itG~~gsGKst~~~~l~~~----~-~~~~i~~D 31 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADK----Y-HFPVIDAD 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHh----c-CCeEEeCC
Confidence 566799999999999877653 3 24457887
No 401
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.58 E-value=0.52 Score=52.80 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHH-------CCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN-------NGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~-------~g~~vll~d~D 126 (390)
.+.-+++.|.+|||||+++..+|..+.+ +|++++.+|..
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~ 243 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 243 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh
Confidence 3334455599999999999999999875 47788888775
No 402
>PLN02748 tRNA dimethylallyltransferase
Probab=88.44 E-value=0.54 Score=48.92 Aligned_cols=34 Identities=32% Similarity=0.544 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...++++.|..|+|||++|..||..+ ..-+|++|
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~D 54 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINAD 54 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCc
Confidence 34467778999999999999998765 46788998
No 403
>PLN02840 tRNA dimethylallyltransferase
Probab=88.42 E-value=0.5 Score=48.42 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.+.++++.|..|+||||+|..||..+. .-+|++|.
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~-----~~iis~Ds 54 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLN-----GEIISADS 54 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCC-----CCeEeccc
Confidence 456788899999999999999988762 23677774
No 404
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=88.35 E-value=4 Score=38.84 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=35.5
Q ss_pred EEEEcCC-CCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc
Q 016417 91 YYMLGGK-GGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132 (390)
Q Consensus 91 ~~~~~gk-gGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~ 132 (390)
+++++|- .|.||=.+|+.++..|..+|++|..+-.||.-|+.
T Consensus 3 i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd 45 (255)
T cd03113 3 IFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVD 45 (255)
T ss_pred EEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCC
Confidence 4444443 78999999999999999999999999999986654
No 405
>PRK13342 recombination factor protein RarA; Reviewed
Probab=88.31 E-value=0.52 Score=48.20 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=24.6
Q ss_pred hhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+..++.+....-+++.|.+|+||||+|..+|..+
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4455554444345667999999999999998754
No 406
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=88.27 E-value=0.78 Score=41.11 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=31.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
+.+++|==|+||||+-.++.. ....|.|+.+|-.|...
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~ 39 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGE 39 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTS
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccc
Confidence 567889999999999999887 67789999999988663
No 407
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=88.23 E-value=0.61 Score=41.39 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~ 134 (390)
+-++++.|-.|+||||++..|+..|. .-.+|+|--|+....
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~-----~~F~dgDd~Hp~~Nv 52 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELG-----LKFIDGDDLHPPANV 52 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhC-----CcccccccCCCHHHH
Confidence 44666679999999999999988774 557899988766644
No 408
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=88.23 E-value=0.75 Score=38.12 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la 110 (390)
..++.+.|..|+||||+...+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4566777999999999998875
No 409
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.21 E-value=0.44 Score=41.65 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=24.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++++|-.|+||||+|..++..+ |.+ ++|.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~--~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLK--LISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCc--eecHH
Confidence 57788999999999999998754 443 56654
No 410
>PTZ00088 adenylate kinase 1; Provisional
Probab=88.19 E-value=0.44 Score=44.87 Aligned_cols=30 Identities=30% Similarity=0.270 Sum_probs=22.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|.+|+||||+|..||..+ .+-.+++|
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~-----g~~~is~g 38 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE-----NLKHINMG 38 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCcEEECC
Confidence 4445999999999999887754 35555554
No 411
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=88.16 E-value=0.74 Score=47.08 Aligned_cols=48 Identities=15% Similarity=0.333 Sum_probs=37.8
Q ss_pred ccchhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 77 VSGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+..+..|+......++|+.|.-|+||+.+-..-++ +...+||+||||+
T Consensus 5 ~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L---~~r~~vL~IDC~~ 52 (431)
T PF10443_consen 5 IEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVL---KDRKNVLVIDCDQ 52 (431)
T ss_pred HHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHH---hCCCCEEEEEChH
Confidence 34677899999999999999999999987644332 3345699999993
No 412
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.11 E-value=0.92 Score=45.04 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHC----C--CCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANN----G--HPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~----g--~~vll~d~D~ 127 (390)
...+++.|.+|+|||+++..++..+.+. | ..+..+++..
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 3456778999999999999999887643 2 2466666643
No 413
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.08 E-value=0.81 Score=45.14 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=24.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
-+++.|.+|+||||+|..+|..+ |.++..++..
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~ 85 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEM---GVNIRITSGP 85 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHh---CCCeEEEecc
Confidence 45677999999999999998876 4455555543
No 414
>PRK13949 shikimate kinase; Provisional
Probab=88.07 E-value=0.48 Score=42.27 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=22.1
Q ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 94 ~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.|-.|+||||++..||..+ | .-.+|+|
T Consensus 6 liG~~GsGKstl~~~La~~l---~--~~~id~D 33 (169)
T PRK13949 6 LVGYMGAGKTTLGKALAREL---G--LSFIDLD 33 (169)
T ss_pred EECCCCCCHHHHHHHHHHHc---C--CCeeccc
Confidence 34999999999999998876 2 4467776
No 415
>PLN02318 phosphoribulokinase/uridine kinase
Probab=88.05 E-value=0.64 Score=49.68 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
....++.+.|..|+||||++..++..+ ..+.+|..|-.+
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEccee
Confidence 456888899999999999999998765 257788888664
No 416
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=88.04 E-value=0.34 Score=46.81 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=27.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
+.+.|..|+||||++..|+..+-..| +.++..|..+.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~~~ 38 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDYHS 38 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECccccc
Confidence 45569999999999999987775443 55666774443
No 417
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=87.99 E-value=0.6 Score=48.76 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+.|++--.+||||++++.|+..+.++|++|..+-.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 35667778999999999999999999999986643
No 418
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.97 E-value=0.87 Score=45.81 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~d~D~~ 128 (390)
.+.++++.|..|+||||+..++...+... +.+.++..-||-
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi 175 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI 175 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc
Confidence 45677788999999999999998887643 233444445554
No 419
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=87.93 E-value=0.52 Score=41.70 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=23.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 96 gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
|-.|+||||++..++..+ | ...+|.|..+
T Consensus 2 G~sGsGKSTla~~la~~l---~--~~~~~~d~~~ 30 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQL---H--AAFLDGDFLH 30 (163)
T ss_pred CCCCCcHHHHHHHHHHHh---C--CeEEeCccCC
Confidence 889999999999998887 2 4677888643
No 420
>PRK14738 gmk guanylate kinase; Provisional
Probab=87.75 E-value=0.52 Score=43.36 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la 110 (390)
..+++++.|..|+||||++..|.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 45778888999999999887764
No 421
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=87.74 E-value=0.65 Score=51.20 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=30.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEE
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVV 123 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~ 123 (390)
..+.++.|.+|+||||+...+...+...|++|.++
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ 402 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGA 402 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 34778889999999999999988888889999987
No 422
>PRK00300 gmk guanylate kinase; Provisional
Probab=87.59 E-value=0.47 Score=43.13 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
..++++.|..|+||||++..++..+
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567777999999999999988764
No 423
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.55 E-value=0.91 Score=41.07 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
..+.+..| .|-||||-|.-+|...+-+|.||+++=.
T Consensus 22 Gli~VYtG-dGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 22 GLVQVFTS-SQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred CEEEEEeC-CCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 34555545 4789999999999999999999999965
No 424
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=87.53 E-value=0.81 Score=42.31 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++...|.-|+||||++..++.. .|.+ ++|+|
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~---lg~~--vidaD 38 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEK---LNLN--VVCAD 38 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---cCCe--EEecc
Confidence 56677799999999999887643 3555 68887
No 425
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=87.46 E-value=0.58 Score=45.97 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+..+++.|..|+||||++..||..+ |.+++ |+|
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L---g~~~i--d~D 165 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL---GVPFV--ELN 165 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc---CCCEE--eHH
Confidence 33456666999999999999988766 66654 766
No 426
>PRK07429 phosphoribulokinase; Provisional
Probab=87.44 E-value=0.67 Score=46.04 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
...++-+.|..|+||||++..++..+-.. .+.++..|-.+.
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd~~~ 47 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDDYHS 47 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEeccccc
Confidence 45677888999999999999998766433 355666775543
No 427
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.32 E-value=0.88 Score=50.97 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=37.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC---CCCchHhhc
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA---HSLSDSFAQ 137 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~---~~l~~~~g~ 137 (390)
..+++.|..|||||++|..+|..+-..+.++..+|+... ++...++|.
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~ 646 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGA 646 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCC
Confidence 356677999999999999999999888889999998632 345555553
No 428
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=87.16 E-value=0.84 Score=48.46 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=34.6
Q ss_pred hhhhhhcCCcEEEEEcCCCCCcHHHHHHHH-HHHHHH-----CCCCeEEEecC
Q 016417 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASL-AVKFAN-----NGHPTLVVSTD 126 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~gkgGvGKtt~a~~l-a~~~a~-----~g~~vll~d~D 126 (390)
.++.+....+.++|+.|-.|+||||+|..= |+.+-. ++..|+++.-.
T Consensus 217 QneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN 269 (747)
T COG3973 217 QNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN 269 (747)
T ss_pred HHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCc
Confidence 344566678899999999999999999875 555543 34468887643
No 429
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.15 E-value=0.71 Score=50.00 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=33.4
Q ss_pred hhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 84 ~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++.++|++..|.+|-||||+|--+|. +.||+|+=|.+-
T Consensus 321 s~RP~kKilLL~GppGlGKTTLAHViAk---qaGYsVvEINAS 360 (877)
T KOG1969|consen 321 SKRPPKKILLLCGPPGLGKTTLAHVIAK---QAGYSVVEINAS 360 (877)
T ss_pred cCCCccceEEeecCCCCChhHHHHHHHH---hcCceEEEeccc
Confidence 4457889999999999999999987765 569999988763
No 430
>PLN02459 probable adenylate kinase
Probab=87.13 E-value=0.64 Score=44.67 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.|.+|+||||+|..+|..+
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4445999999999999988755
No 431
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=87.10 E-value=0.59 Score=40.78 Aligned_cols=17 Identities=41% Similarity=0.462 Sum_probs=14.1
Q ss_pred cCCCCCcHHHHHHHHHH
Q 016417 95 GGKGGVGKTSCAASLAV 111 (390)
Q Consensus 95 ~gkgGvGKtt~a~~la~ 111 (390)
-|+.|+||||++.+|-.
T Consensus 7 iG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 7 IGPSGSGKTTLAQALNG 23 (143)
T ss_pred ECCCCCCHHHHHHHHcC
Confidence 39999999999977643
No 432
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.08 E-value=0.55 Score=42.30 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~ 112 (390)
.++++.|..|+||||+.-.|+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36677799999999999888553
No 433
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=87.07 E-value=0.83 Score=52.90 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
...++.+.|.||+||||+|..++..+...-...+.++
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 4566777899999999999999888877543344444
No 434
>PRK14737 gmk guanylate kinase; Provisional
Probab=86.92 E-value=0.59 Score=42.44 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~ 111 (390)
..++++++|..|+||||++-.|..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 357888999999999999988754
No 435
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=86.77 E-value=0.66 Score=43.05 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
..+++++|-=|+||||+|..||.++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 45788899999999999999998774
No 436
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=86.65 E-value=0.97 Score=50.36 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCCC-CCchHhh
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH-SLSDSFA 136 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~~-~l~~~~g 136 (390)
++.++ .|+.|+||||+...++..+.+ .|.+|.++|-|... .+...+|
T Consensus 442 gn~~I--~G~tGsGKS~l~~~l~~~~~~~~g~~v~i~D~~~s~~~l~~alG 490 (811)
T PRK13873 442 GHTLV--VGPTGAGKSVLLALMALQFRRYPGAQVFAFDFGGSIRAATLAMG 490 (811)
T ss_pred ceEEE--ECCCCCCHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHhcC
Confidence 35554 499999999999999888776 68899999998653 4555565
No 437
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=86.65 E-value=1.2 Score=44.03 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=26.5
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~ 116 (390)
-++++.... ...++.|-||+||||++..+..+++..
T Consensus 81 lId~~fr~g--~~~~~~gdsg~GKttllL~l~IalaaG 116 (402)
T COG3598 81 LIDEFFRKG--YVSILYGDSGVGKTTLLLYLCIALAAG 116 (402)
T ss_pred hhhHHhhcC--eeEEEecCCcccHhHHHHHHHHHHHhh
Confidence 445555443 344555999999999999999988764
No 438
>PRK13976 thymidylate kinase; Provisional
Probab=86.65 E-value=1.3 Score=41.13 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=29.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC-C-CCeEEEecCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANN-G-HPTLVVSTDPA 128 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~-g-~~vll~d~D~~ 128 (390)
++++-|--|+||||.+..|+..|... | ++|.+. ..|.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~-~eP~ 40 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT-REPG 40 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe-eCCC
Confidence 67788999999999999999999986 6 466544 3444
No 439
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.64 E-value=0.96 Score=45.10 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEE
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVV 123 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~ 123 (390)
.+.+++++|..|+||||+..++...+... +.+++.+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 34677888999999999999988777644 3344444
No 440
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=86.57 E-value=0.71 Score=40.59 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHP 119 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~ 119 (390)
.+-+++.|+.|+||||+|..| .++|++
T Consensus 14 g~gvLi~G~sG~GKStlal~L----~~~g~~ 40 (149)
T cd01918 14 GIGVLITGPSGIGKSELALEL----IKRGHR 40 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHH----HHcCCe
Confidence 355666799999999998644 445643
No 441
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=86.50 E-value=0.59 Score=45.57 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=24.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
++++.|..|+|||++|..||..+ ..-+|++|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~-----~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKL-----NAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhC-----CCcEEEech
Confidence 35677999999999999997654 345677773
No 442
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=86.46 E-value=0.83 Score=45.30 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHH--CCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~--~g~~vll~d 124 (390)
.-++++|..|+||||+..+|...+.. .+.|++.++
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 34677899999999999998877753 355666665
No 443
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=86.46 E-value=0.97 Score=42.22 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+.++.|..|+|||.+|.++|... |.+|+..|-
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~---g~pvI~~Dr 34 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKT---GAPVISLDR 34 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH-----EEEEE-S
T ss_pred cEEEEECCCCCChhHHHHHHHHHh---CCCEEEecc
Confidence 466777999999999999988766 666776664
No 444
>PLN02422 dephospho-CoA kinase
Probab=86.44 E-value=0.88 Score=42.97 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=23.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++.+.|.-|+||||++..++ +.| ..++|+|
T Consensus 3 ~igltG~igsGKstv~~~l~----~~g--~~~idaD 32 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK----SSG--IPVVDAD 32 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH----HCC--CeEEehh
Confidence 56778999999999998886 345 4568888
No 445
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=86.42 E-value=1.2 Score=40.95 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=29.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.+.+.|..|+||||+...+...+... .++.++..|...
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~ 40 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYT 40 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCC
Confidence 45566999999999999988776654 568888888654
No 446
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=86.37 E-value=0.71 Score=39.80 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
...++.+.|.-|+||||++..++..+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34577788999999999999999877
No 447
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=86.34 E-value=0.99 Score=39.30 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCC--CCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNG--HPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g--~~vll~d 124 (390)
...++.|..|+|||++.+..+......+ .+++++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~ 61 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLV 61 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEe
Confidence 4556679999999998888877777665 5666653
No 448
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=86.28 E-value=0.94 Score=50.18 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=34.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhh
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFA 136 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g 136 (390)
.++.|+.|+|||++...++..+...|.+|.++|-+... .+...+|
T Consensus 433 ~~I~G~tGsGKS~~~~~l~~~~~~~g~~v~iiD~~~sy~~l~~~~g 478 (797)
T TIGR02746 433 IAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKKLCEMLG 478 (797)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHcC
Confidence 34449999999999999999888899999998776332 3444444
No 449
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=86.24 E-value=0.77 Score=41.09 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=25.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 96 gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
|--|+||||++..|+.+|...|++ .++...|
T Consensus 3 GiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~ 33 (186)
T PF02223_consen 3 GIDGSGKTTQIRLLAEALKEKGYK-VIITFPP 33 (186)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTEE-EEEEESS
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCc-ccccCCC
Confidence 567999999999999999999998 4444433
No 450
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.23 E-value=0.88 Score=51.00 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=31.7
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHH-------CCCCeEEEecC
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFAN-------NGHPTLVVSTD 126 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~-------~g~~vll~d~D 126 (390)
+..+.-+++.|.+|||||+++..+|..+.. .|++++.+|..
T Consensus 191 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~ 238 (852)
T TIGR03346 191 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG 238 (852)
T ss_pred cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH
Confidence 334444555699999999999999999876 47888888754
No 451
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=86.22 E-value=1.2 Score=48.21 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.++.+++ |..|+|||++...+...+.+.|..|+++|-+..
T Consensus 176 ~~H~lv~--G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD 215 (634)
T TIGR03743 176 VGHTLVL--GTTGVGKTRLAELLITQDIRRGDVVIVIDPKGD 215 (634)
T ss_pred CCcEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 4566666 999999999999999999999999999986543
No 452
>PRK10490 sensor protein KdpD; Provisional
Probab=86.16 E-value=29 Score=39.27 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeE--EEecCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTL--VVSTDPA 128 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vl--l~d~D~~ 128 (390)
.++--++++--+|||||+-..+-|..+.++|..|+ ++++-..
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h~r 65 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETHGR 65 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCCCC
Confidence 35556777889999999999999999999999985 5666533
No 453
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=86.14 E-value=1 Score=49.72 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCC-CeEEEecCCCC-CCchHhh
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGH-PTLVVSTDPAH-SLSDSFA 136 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~-~vll~d~D~~~-~l~~~~g 136 (390)
..+.+++ |+.|+||||++..++..+...|. +|.++|-+-.. .+...+|
T Consensus 434 ~~n~~I~--G~tGsGKS~~~~~l~~~~~~~~~~~v~iiD~~~~~~~~~~~~g 483 (785)
T TIGR00929 434 LGHTLIF--GPTGSGKTTLLNFLLAQMQKYGGMTIFAFDKDRGMEIFIRAFG 483 (785)
T ss_pred CceEEEE--CCCCCCHHHHHHHHHHHhhccCCCeEEEEeCCCChHHhhhccC
Confidence 3444444 99999999999999888888877 99999976432 3444454
No 454
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=86.08 E-value=0.77 Score=48.31 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=27.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC-----CCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANN-----GHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~-----g~~vll~d~D 126 (390)
-+++.|.+|+|||+++.++|..+... +.+..+++.+
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 45566999999999999999988765 3345555544
No 455
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=85.95 E-value=1.1 Score=41.07 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++.+.|..|+||||++..++. .|. .++|+|
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~--~vid~D 32 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGF--LIVDAD 32 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCC--eEEeCc
Confidence 3566779999999999988873 454 568887
No 456
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=85.91 E-value=1.1 Score=42.34 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=28.7
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHC-----CCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANN-----GHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~-----g~~vll~d~ 125 (390)
.+.-|.+||||||+---+|..++-. ++||.+||.
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDe 178 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDE 178 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEec
Confidence 3444999999999999999988764 679999997
No 457
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=85.89 E-value=1.6 Score=45.99 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=30.2
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccC
Q 016417 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140 (390)
Q Consensus 97 kgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~ 140 (390)
+-|.||||+++.|+..|.+.|+++.+.= .++|++-.||.+.+
T Consensus 66 p~GEGKtTttiGL~~al~~lg~~~~~~l--RePSlGP~fG~KGG 107 (557)
T PF01268_consen 66 PAGEGKTTTTIGLAQALNRLGKKAIAAL--REPSLGPVFGIKGG 107 (557)
T ss_dssp TTS-SHHHHHHHHHHHHHHTT--EEEEE------CHHHHCST-S
T ss_pred CCCCCceeHHHHHHHHHHhcCCceEEEE--ecCCCCCccCcccc
Confidence 5799999999999999999999887653 56899999998754
No 458
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=85.86 E-value=0.49 Score=40.62 Aligned_cols=43 Identities=30% Similarity=0.315 Sum_probs=22.4
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcc
Q 016417 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~ 138 (390)
+.-|-+|+||||++.++|..+-..=.| |-.-|.---+|++|..
T Consensus 3 Lleg~PG~GKT~la~~lA~~~~~~f~R---Iq~tpdllPsDi~G~~ 45 (131)
T PF07726_consen 3 LLEGVPGVGKTTLAKALARSLGLSFKR---IQFTPDLLPSDILGFP 45 (131)
T ss_dssp EEES---HHHHHHHHHHHHHTT--EEE---EE--TT--HHHHHEEE
T ss_pred eeECCCccHHHHHHHHHHHHcCCceeE---EEecCCCCcccceeee
Confidence 445999999999999999875433223 2222333455666654
No 459
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=85.83 E-value=0.62 Score=47.17 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=33.6
Q ss_pred hhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 83 ~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.......-+++.|.+|+||||+|.-+--.+...+ .|+.|++=
T Consensus 4 FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~~-~v~YISTR 46 (484)
T PF07088_consen 4 FFTQEPGQTLLIKGEPGTGKTTFALELLNSLKDHG-NVMYISTR 46 (484)
T ss_pred hhcCCCCcEEEEecCCCCCceeeehhhHHHHhccC-CeEEEEec
Confidence 44444555677789999999999999988887774 78888763
No 460
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=85.80 E-value=0.79 Score=42.01 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=22.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.+.|..|+||||++..++ +.| ..++|+|
T Consensus 2 i~itG~~gsGKst~~~~l~----~~g--~~~i~~D 30 (196)
T PRK14732 2 IGITGMIGGGKSTALKILE----ELG--AFGISAD 30 (196)
T ss_pred EEEECCCCccHHHHHHHHH----HCC--CEEEecc
Confidence 4567999999999998775 335 5667888
No 461
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=85.67 E-value=0.61 Score=40.04 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=18.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.|+.|+||||++..|+..+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 4566999999999988887654
No 462
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=85.65 E-value=0.61 Score=41.54 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~ 111 (390)
++.++.|..||||||+.-+|.-
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6777779999999999877754
No 463
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=85.61 E-value=1.2 Score=43.38 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..++++.|..|+||||++..++..+ |..++.++...
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~ 78 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD 78 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc
Confidence 3577778999999999999997765 56777777654
No 464
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=85.51 E-value=0.65 Score=40.73 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 98 GGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 98 gGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.|+||||++..||..| ..-++|+|-
T Consensus 1 ~GsGKStvg~~lA~~L-----~~~fiD~D~ 25 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRL-----GRPFIDLDD 25 (158)
T ss_dssp TTSSHHHHHHHHHHHH-----TSEEEEHHH
T ss_pred CCCcHHHHHHHHHHHh-----CCCccccCH
Confidence 4999999999999987 466888873
No 465
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=85.50 E-value=1.5 Score=41.68 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=26.3
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+-+.+++ ||.|+||||+..++-..+...=..+.++..
T Consensus 12 ~~fr~viI--G~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 12 DPFRMVII--GKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred CCceEEEE--CCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 33344444 999999999999998776665334555544
No 466
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=85.36 E-value=1.3 Score=37.39 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=26.0
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCc
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v 329 (390)
+.+++|..+.........+....+...+.| .-+|+||+
T Consensus 84 d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~ 121 (168)
T cd04163 84 DLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKI 121 (168)
T ss_pred CEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEch
Confidence 567777777654444556667777777776 46889996
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=85.31 E-value=0.67 Score=41.80 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEE
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVV 123 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~ 123 (390)
...+++.|+.|+||||+..++...+. ...++..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~i 58 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP-PDERIITI 58 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEE
Confidence 34566679999999999988876554 34456555
No 468
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=85.24 E-value=0.66 Score=40.15 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=17.1
Q ss_pred cCCCCCcHHHHHHHHHHHH
Q 016417 95 GGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 95 ~gkgGvGKtt~a~~la~~~ 113 (390)
.|.+|+||||+|..+|..+
T Consensus 2 ~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 2 LGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHhc
Confidence 4999999999999999865
No 469
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=85.20 E-value=0.66 Score=50.14 Aligned_cols=30 Identities=40% Similarity=0.441 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN 116 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~ 116 (390)
...+|+.|.|.+|||||+++-++|.+|-+.
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk 465 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRK 465 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCc
Confidence 467899999999999999999999988654
No 470
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=85.13 E-value=1.4 Score=41.35 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=30.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCC-eEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHP-TLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~-vll~d~D 126 (390)
++++.|-+-+||||.|..|..+|..+|.| ++.|--|
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 68889999999999999999999999965 4444444
No 471
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=85.00 E-value=1 Score=44.61 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHH--CCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~--~g~~vll~d~D 126 (390)
+..++++|..|+||||+..+|+..+.. ...+++.++-.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~ 187 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDT 187 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCC
Confidence 445566699999999999999876642 34567666643
No 472
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=84.93 E-value=1 Score=50.40 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=35.3
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhh
Q 016417 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFA 136 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g 136 (390)
++.|+.|+||||+...++..+...|.+|.++|-+... .+...+|
T Consensus 453 ~I~G~sGsGKS~l~k~l~~~~~~~g~~viiiD~~~sy~~l~~~lG 497 (844)
T PRK13721 453 AVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCENMG 497 (844)
T ss_pred EEEcCCCCCHHHHHHHHHHhhhccCCEEEEEeCCCCHHHHHHHcC
Confidence 3339999999999999998888889999999887542 4556665
No 473
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=84.92 E-value=0.91 Score=40.89 Aligned_cols=34 Identities=35% Similarity=0.506 Sum_probs=25.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+.+..|. |-||||-|.-+|...+-+|.||+++=.
T Consensus 6 i~vytG~-GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 6 IQVYTGD-GKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EEEEESS-SS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EEEEeCC-CCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 4444453 679999999999999999999999976
No 474
>COG3911 Predicted ATPase [General function prediction only]
Probab=84.87 E-value=0.96 Score=39.90 Aligned_cols=29 Identities=41% Similarity=0.631 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCe
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPT 120 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~v 120 (390)
.+++.+.+|-+|.||||+-++| ++.|+-|
T Consensus 8 R~~~fIltGgpGaGKTtLL~aL----a~~Gfat 36 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAAL----ARAGFAT 36 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHH----HHcCcee
Confidence 3468888899999999987665 5666643
No 475
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.63 E-value=1.2 Score=49.99 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=35.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC---CCCchHhhc
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA---HSLSDSFAQ 137 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~---~~l~~~~g~ 137 (390)
.+++.|..|||||++|..+|..+-..+...+.+|+... ++...++|.
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~ 649 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGA 649 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCC
Confidence 56677999999999999999988777777877887532 344555553
No 476
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=84.57 E-value=1.2 Score=43.67 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|..|+|||.+|..||.. . .-+|++|
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~---~---~eIIsaD 35 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG---K---AEIINVD 35 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh---C---CcEEecc
Confidence 47788899999999988888765 2 3689998
No 477
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=84.56 E-value=0.95 Score=40.66 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.++++.|..|+||||++..++..+. ...+|.|.-+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~-----~~~i~gd~~~ 38 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS-----AKFIDGDDLH 38 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC-----CEEECCcccC
Confidence 3566679999999999999987652 2466777543
No 478
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.50 E-value=0.32 Score=43.32 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.++.|..|+||||+.+++-..+- ..+..|++|
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~---~~~~~VN~D 36 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL---PGIVFVNAD 36 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc---CCeEEECHH
Confidence 46888899999999999887654432 267788887
No 479
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=84.50 E-value=1.4 Score=49.47 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH 129 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~~ 129 (390)
.++.+++ |+.|+||||+...++..+.+ .|.+|.++|-|...
T Consensus 488 ~gh~~I~--G~tGsGKS~l~~~L~~~~~k~~~~~v~i~D~~~s~ 529 (852)
T PRK13891 488 LGHTFMF--GPTGAGKSTHLGIIAAQLRRYAGMSIYAFDKGMSM 529 (852)
T ss_pred CCeEEEE--CCCCCCHHHHHHHHHHHHHhcCCCEEEEEcCCccc
Confidence 3455444 99999999999999888876 57899999987554
No 480
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=84.36 E-value=1 Score=40.77 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=22.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++-+.|.=|+||||++.-++. ....++|+|
T Consensus 2 iIglTG~igsGKStv~~~l~~------~G~~vidaD 31 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE------LGFPVIDAD 31 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH------TT-EEEEHH
T ss_pred EEEEECCCcCCHHHHHHHHHH------CCCCEECcc
Confidence 455669999999999877644 457778887
No 481
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=84.20 E-value=1.1 Score=39.90 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANN 116 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~ 116 (390)
.+.++.|..|+||||+.-++.+.|-..
T Consensus 20 g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 466777999999999999998888543
No 482
>PRK00049 elongation factor Tu; Reviewed
Probab=84.02 E-value=6.1 Score=40.19 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=32.4
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCcc
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~ 330 (390)
+.+++|..+..-....+++.+..+...|+|+.-+++|++-
T Consensus 100 D~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D 139 (396)
T PRK00049 100 DGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred CEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecC
Confidence 5778888877666678889999999999887667899973
No 483
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=84.01 E-value=2 Score=45.87 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.+++++|++|-||.|+- ++..|++.|++|.+++-+.
T Consensus 79 ~gKvVLVTGATGgIG~a-----LAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 79 DEDLAFVAGATGKVGSR-----TVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CCCEEEEECCCCHHHHH-----HHHHHHHCCCeEEEEeCCH
Confidence 46789999999999886 4456677899999887654
No 484
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=83.98 E-value=0.96 Score=47.62 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
...++.+.|..|+||||++-.+|..+ ...++|+|--
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l-----~~~~~d~g~~ 318 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL-----GLLYLDTGAM 318 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEecCCce
Confidence 44677778999999999999999887 3778887643
No 485
>PRK00023 cmk cytidylate kinase; Provisional
Probab=83.95 E-value=1.2 Score=41.59 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+.++.+.|..|+||||++..+|..+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678888999999999999988766
No 486
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=83.88 E-value=1.1 Score=42.49 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=30.4
Q ss_pred hhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 84 ~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
......-=++++|.+|+||||....||..|.-..++=.+++.
T Consensus 43 a~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 43 AKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 334444456678999999999999999988765565445444
No 487
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.79 E-value=2.2 Score=39.83 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...++++-|-.|+|||-++..+++-+-++|+++.++++.
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe 65 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTE 65 (235)
T ss_pred cCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEec
Confidence 456788889999999999999999999999999999985
No 488
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=83.76 E-value=0.99 Score=36.76 Aligned_cols=18 Identities=44% Similarity=0.510 Sum_probs=14.4
Q ss_pred EcCCCCCcHHHHHHHHHH
Q 016417 94 LGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 94 ~~gkgGvGKtt~a~~la~ 111 (390)
+.|..||||||+-..+..
T Consensus 4 V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 4 VLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHhc
Confidence 349999999999776654
No 489
>PRK12740 elongation factor G; Reviewed
Probab=83.73 E-value=7.1 Score=42.48 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=30.3
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccC
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 331 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p 331 (390)
+.+++|..+..-....+..++..+...++|+. +|+||+-.
T Consensus 85 D~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~ 124 (668)
T PRK12740 85 DGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDR 124 (668)
T ss_pred CeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 57788888877666677788888888888754 68899743
No 490
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.62 E-value=2.6 Score=46.48 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=39.6
Q ss_pred hhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++........++++++..-|.||||+++.++. .+..|..|.=++.|
T Consensus 28 ~~~L~~~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld 73 (894)
T COG2909 28 LDRLRRANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD 73 (894)
T ss_pred HHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC
Confidence 44444556889999999999999999999999 88888999999887
No 491
>PRK14526 adenylate kinase; Provisional
Probab=83.55 E-value=1 Score=41.79 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.8
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.|.+|+||||++..+|..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3456999999999998887654
No 492
>CHL00095 clpC Clp protease ATP binding subunit
Probab=83.40 E-value=1.5 Score=48.94 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=0.0
Q ss_pred hhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHC-------CCCeEEEec
Q 016417 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANN-------GHPTLVVST 125 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~-------g~~vll~d~ 125 (390)
+-+.+....+.=+++.|.+|||||+++-.+|..+... +.++.-+|.
T Consensus 191 ~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 191 VIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred HHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
No 493
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=83.35 E-value=4.9 Score=42.60 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=30.9
Q ss_pred CceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCcc
Q 016417 290 STEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII 330 (390)
Q Consensus 290 ~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~ 330 (390)
.+.+++|..+..-.-..++++++.++..++|+ -+++|++=
T Consensus 103 aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D 142 (526)
T PRK00741 103 VDSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLD 142 (526)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCc
Confidence 35788888776544556889999999999985 57899973
No 494
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.27 E-value=0.98 Score=47.13 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
.+++.|..|+||||+|-.+|..+-
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 467789999999999999998764
No 495
>COG0645 Predicted kinase [General function prediction only]
Probab=83.23 E-value=1.1 Score=40.22 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
++++++|-.|+||||+|..++..+
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~l 25 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELL 25 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhc
Confidence 577888999999999999988765
No 496
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=83.10 E-value=1 Score=44.55 Aligned_cols=31 Identities=35% Similarity=0.360 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 98 GGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 98 gGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
||.|||-+...||..+.++|.++.+++=.=.
T Consensus 58 GGtGKTP~vi~la~~l~~rG~~~gvvSRGYg 88 (336)
T COG1663 58 GGTGKTPVVIWLAEALQARGVRVGVVSRGYG 88 (336)
T ss_pred CCCCcCHHHHHHHHHHHhcCCeeEEEecCcC
Confidence 9999999999999999999999999987643
No 497
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=83.08 E-value=5.6 Score=42.18 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=30.6
Q ss_pred CceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCcc
Q 016417 290 STEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII 330 (390)
Q Consensus 290 ~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~ 330 (390)
.+.+++|..+..-.-..++++++.++..++| .-+|+|++=
T Consensus 104 aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD 143 (527)
T TIGR00503 104 VDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLD 143 (527)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcc
Confidence 3578888877765556778888888888887 567889974
No 498
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=83.05 E-value=1.3 Score=49.51 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=36.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC---CCCCchHhhc
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP---AHSLSDSFAQ 137 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~---~~~l~~~~g~ 137 (390)
++++.|..|||||.+|.+||..+-..+..+..+|+.- .++.+.++|.
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~ 647 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGS 647 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCC
Confidence 5778899999999999999999876666778888642 3566666654
No 499
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=83.04 E-value=1.5 Score=48.17 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCC--CCeEEE
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNG--HPTLVV 123 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g--~~vll~ 123 (390)
+.+.++.|-+|+||||+...+...+...| .+|.++
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ 374 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLA 374 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEE
Confidence 34788889999999999999988888887 677765
No 500
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=83.04 E-value=2.4 Score=39.78 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+.++++-|=++.|||++|..|+..|.-.|.++-++...
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g 49 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVG 49 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecc
Confidence 4678888889999999999999999999999999999863
Done!