Query 016417
Match_columns 390
No_of_seqs 236 out of 2234
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iqw_A Tail-anchored protein t 100.0 1.9E-46 6.5E-51 369.1 19.7 297 79-390 6-322 (334)
2 3io3_A DEHA2D07832P; chaperone 100.0 7.1E-45 2.4E-49 359.7 17.1 294 78-390 7-331 (348)
3 3ug7_A Arsenical pump-driving 100.0 4.1E-42 1.4E-46 340.2 30.2 290 86-390 23-334 (349)
4 3zq6_A Putative arsenical pump 100.0 3E-42 1E-46 337.8 27.7 285 89-390 14-319 (324)
5 2woo_A ATPase GET3; tail-ancho 100.0 6.3E-41 2.2E-45 329.1 22.3 296 80-390 10-319 (329)
6 2woj_A ATPase GET3; tail-ancho 100.0 3.9E-39 1.3E-43 319.5 22.4 293 79-390 8-336 (354)
7 3igf_A ALL4481 protein; two-do 100.0 5.9E-36 2E-40 298.1 11.5 259 89-388 2-286 (374)
8 1ihu_A Arsenical pump-driving 100.0 1.8E-31 6.2E-36 280.6 14.8 269 88-388 7-295 (589)
9 1ihu_A Arsenical pump-driving 100.0 4E-28 1.4E-32 255.2 20.0 253 78-386 313-583 (589)
10 3la6_A Tyrosine-protein kinase 99.7 8E-17 2.7E-21 154.8 16.1 167 86-333 90-268 (286)
11 4dzz_A Plasmid partitioning pr 99.7 1.8E-17 6.1E-22 149.5 8.5 49 89-137 2-50 (206)
12 2ph1_A Nucleotide-binding prot 99.7 2.3E-16 7.9E-21 148.9 13.9 56 83-138 13-69 (262)
13 3kjh_A CO dehydrogenase/acetyl 99.7 5.1E-18 1.8E-22 157.2 2.3 49 90-139 2-50 (254)
14 3fwy_A Light-independent proto 99.7 1.4E-17 5E-22 162.0 4.3 50 87-137 47-96 (314)
15 3cio_A ETK, tyrosine-protein k 99.7 5.7E-16 1.9E-20 149.7 15.1 167 86-333 102-280 (299)
16 3end_A Light-independent proto 99.7 1.3E-16 4.5E-21 153.7 8.8 51 87-138 40-90 (307)
17 3bfv_A CAPA1, CAPB2, membrane 99.7 8.4E-16 2.9E-20 146.4 13.8 167 86-333 80-258 (271)
18 3k9g_A PF-32 protein; ssgcid, 99.6 1.6E-16 5.6E-21 149.8 7.6 58 79-137 18-75 (267)
19 3ea0_A ATPase, para family; al 99.6 1.5E-15 5E-20 140.7 13.6 50 87-136 3-54 (245)
20 1g3q_A MIND ATPase, cell divis 99.6 6.3E-15 2.1E-19 135.9 15.7 52 88-139 2-54 (237)
21 1wcv_1 SOJ, segregation protei 99.6 2.5E-15 8.6E-20 141.2 12.7 54 86-139 4-57 (257)
22 3pg5_A Uncharacterized protein 99.6 1.2E-14 4E-19 143.9 15.1 48 89-136 2-49 (361)
23 3q9l_A Septum site-determining 99.6 8.5E-15 2.9E-19 136.8 12.7 52 88-139 2-54 (260)
24 1hyq_A MIND, cell division inh 99.6 1.4E-14 4.6E-19 136.0 13.3 52 88-139 2-54 (263)
25 2oze_A ORF delta'; para, walke 99.6 8.1E-15 2.8E-19 140.3 11.7 58 79-136 25-84 (298)
26 3cwq_A Para family chromosome 99.6 5.5E-15 1.9E-19 135.1 8.7 48 89-137 1-48 (209)
27 3ez9_A Para; DNA binding, wing 99.5 7E-14 2.4E-18 140.0 12.6 54 86-139 109-168 (403)
28 3ez2_A Plasmid partition prote 99.5 7.6E-14 2.6E-18 139.5 11.3 53 87-139 107-165 (398)
29 2afh_E Nitrogenase iron protei 99.5 1.3E-13 4.5E-18 131.5 11.6 48 89-137 3-50 (289)
30 3fkq_A NTRC-like two-domain pr 99.5 1.1E-13 3.9E-18 137.3 10.6 53 87-139 142-194 (373)
31 1cp2_A CP2, nitrogenase iron p 99.5 1E-13 3.5E-18 130.4 9.7 47 89-136 2-48 (269)
32 2xj4_A MIPZ; replication, cell 99.4 4.8E-14 1.6E-18 134.8 3.1 51 88-138 4-55 (286)
33 1byi_A Dethiobiotin synthase; 99.3 9.7E-11 3.3E-15 106.9 15.8 41 292-332 140-180 (224)
34 2xxa_A Signal recognition part 98.8 4.5E-08 1.6E-12 99.0 14.1 43 89-132 101-144 (433)
35 2r8r_A Sensor protein; KDPD, P 98.7 1.6E-08 5.6E-13 93.4 6.8 48 88-135 5-52 (228)
36 1yrb_A ATP(GTP)binding protein 98.6 4.7E-08 1.6E-12 90.9 6.3 45 87-132 12-56 (262)
37 1j8m_F SRP54, signal recogniti 98.5 2.9E-07 9.9E-12 88.5 10.5 44 89-132 98-141 (297)
38 1zu4_A FTSY; GTPase, signal re 98.5 4.3E-06 1.5E-10 81.1 17.3 41 90-130 106-146 (320)
39 3of5_A Dethiobiotin synthetase 98.4 7.2E-07 2.5E-11 82.4 8.7 41 292-332 142-182 (228)
40 3qxc_A Dethiobiotin synthetase 98.3 6.1E-06 2.1E-10 77.0 13.8 45 80-124 13-57 (242)
41 3fgn_A Dethiobiotin synthetase 98.2 3.8E-05 1.3E-09 71.9 16.8 80 292-387 159-239 (251)
42 3dm5_A SRP54, signal recogniti 97.9 8.9E-06 3.1E-10 82.2 6.4 42 89-130 100-141 (443)
43 1ls1_A Signal recognition part 97.9 1.1E-05 3.7E-10 77.3 6.7 44 88-132 98-141 (295)
44 2v3c_C SRP54, signal recogniti 97.9 6.1E-06 2.1E-10 83.3 3.8 40 91-130 101-140 (432)
45 3kl4_A SRP54, signal recogniti 97.8 1.8E-05 6.2E-10 79.8 6.8 41 89-129 97-137 (433)
46 3p32_A Probable GTPase RV1496/ 97.8 2.4E-05 8.1E-10 76.7 6.1 44 88-131 78-121 (355)
47 2ffh_A Protein (FFH); SRP54, s 97.8 2.8E-05 9.4E-10 78.3 6.3 43 90-132 99-141 (425)
48 2px0_A Flagellar biosynthesis 97.7 2.8E-05 9.5E-10 74.5 5.8 39 91-129 107-146 (296)
49 2j37_W Signal recognition part 97.7 3.4E-05 1.2E-09 79.3 6.6 46 90-135 102-148 (504)
50 1vma_A Cell division protein F 97.6 8.1E-05 2.8E-09 71.7 6.7 41 89-129 104-144 (306)
51 3pzx_A Formate--tetrahydrofola 97.4 0.0002 7E-09 72.3 7.1 52 87-140 56-110 (557)
52 1u94_A RECA protein, recombina 97.4 0.00023 7.7E-09 70.0 6.7 56 72-127 43-101 (356)
53 2dr3_A UPF0273 protein PH0284; 97.3 0.00035 1.2E-08 63.5 6.7 55 74-128 6-62 (247)
54 2zts_A Putative uncharacterize 97.3 0.00037 1.3E-08 63.3 6.4 56 72-127 11-69 (251)
55 2yvu_A Probable adenylyl-sulfa 97.1 0.0005 1.7E-08 60.2 5.6 40 88-127 12-51 (186)
56 1xp8_A RECA protein, recombina 97.0 0.00057 2E-08 67.3 5.7 57 72-128 54-113 (366)
57 3bh0_A DNAB-like replicative h 97.0 0.0007 2.4E-08 65.1 6.0 55 72-126 50-105 (315)
58 2p67_A LAO/AO transport system 97.0 0.00085 2.9E-08 65.2 6.6 43 89-131 56-98 (341)
59 2cvh_A DNA repair and recombin 97.0 0.00067 2.3E-08 60.5 5.1 52 74-128 3-56 (220)
60 3bgw_A DNAB-like replicative h 96.9 0.00083 2.9E-08 67.8 5.7 57 71-127 178-235 (444)
61 2zr9_A Protein RECA, recombina 96.9 0.0011 3.7E-08 64.9 6.2 56 72-127 41-99 (349)
62 4a1f_A DNAB helicase, replicat 96.9 0.0011 3.8E-08 64.6 6.0 55 73-127 29-84 (338)
63 1xjc_A MOBB protein homolog; s 96.8 0.0014 4.7E-08 57.6 5.9 39 90-128 5-43 (169)
64 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0016 5.5E-08 58.2 5.9 54 75-128 7-62 (235)
65 1g5t_A COB(I)alamin adenosyltr 96.7 0.0018 6E-08 58.3 5.7 40 88-128 28-67 (196)
66 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0016 5.4E-08 60.6 5.4 38 89-126 4-41 (260)
67 3hr8_A Protein RECA; alpha and 96.6 0.0035 1.2E-07 61.5 7.4 57 73-129 42-101 (356)
68 1q57_A DNA primase/helicase; d 96.5 0.0021 7.2E-08 65.6 5.5 57 72-128 223-282 (503)
69 2q6t_A DNAB replication FORK h 96.5 0.0027 9.3E-08 63.9 6.1 55 72-126 182-238 (444)
70 1nks_A Adenylate kinase; therm 96.5 0.0023 8E-08 55.5 4.6 37 90-126 2-38 (194)
71 2r6a_A DNAB helicase, replicat 96.4 0.0043 1.5E-07 62.6 6.9 56 72-127 185-242 (454)
72 2qgz_A Helicase loader, putati 96.4 0.0025 8.4E-08 61.1 4.5 89 25-126 98-190 (308)
73 3bos_A Putative DNA replicatio 96.4 0.0047 1.6E-07 55.3 6.1 49 79-127 42-90 (242)
74 1rj9_A FTSY, signal recognitio 96.3 0.0037 1.3E-07 59.9 5.6 39 91-129 104-142 (304)
75 2wsm_A Hydrogenase expression/ 96.3 0.0033 1.1E-07 56.1 4.9 42 88-130 29-70 (221)
76 1rz3_A Hypothetical protein rb 96.3 0.005 1.7E-07 54.7 5.9 42 88-129 21-62 (201)
77 3e70_C DPA, signal recognition 96.3 0.0062 2.1E-07 59.0 6.7 42 88-129 128-169 (328)
78 1n0w_A DNA repair protein RAD5 96.2 0.0029 9.8E-08 57.2 4.1 55 73-127 6-68 (243)
79 2w58_A DNAI, primosome compone 96.2 0.0045 1.5E-07 54.6 4.9 36 90-125 55-90 (202)
80 1v5w_A DMC1, meiotic recombina 96.2 0.0048 1.7E-07 59.9 5.5 59 70-128 101-167 (343)
81 2z43_A DNA repair and recombin 96.2 0.0029 9.9E-08 60.9 3.9 58 71-128 87-152 (324)
82 3uie_A Adenylyl-sulfate kinase 96.1 0.0075 2.6E-07 53.4 6.0 41 87-127 23-63 (200)
83 1kht_A Adenylate kinase; phosp 96.1 0.0044 1.5E-07 53.7 4.3 37 90-126 4-40 (192)
84 2pez_A Bifunctional 3'-phospho 96.1 0.007 2.4E-07 52.4 5.4 39 89-127 5-43 (179)
85 3ec2_A DNA replication protein 96.0 0.005 1.7E-07 53.4 4.5 37 89-125 38-75 (180)
86 3io5_A Recombination and repai 96.0 0.0059 2E-07 59.0 5.2 55 72-127 6-68 (333)
87 1m7g_A Adenylylsulfate kinase; 95.9 0.0076 2.6E-07 53.9 5.2 40 87-126 23-63 (211)
88 3b9q_A Chloroplast SRP recepto 95.9 0.011 3.8E-07 56.4 6.6 41 89-129 100-140 (302)
89 1cr0_A DNA primase/helicase; R 95.9 0.013 4.3E-07 55.2 6.7 51 77-127 22-74 (296)
90 1np6_A Molybdopterin-guanine d 95.8 0.013 4.4E-07 51.4 6.0 40 90-129 7-46 (174)
91 1uj2_A Uridine-cytidine kinase 95.7 0.0075 2.6E-07 55.6 4.3 41 88-128 21-66 (252)
92 2ehv_A Hypothetical protein PH 95.7 0.017 5.7E-07 52.2 6.5 54 74-127 13-69 (251)
93 2og2_A Putative signal recogni 95.7 0.015 5.3E-07 56.9 6.5 41 89-129 157-197 (359)
94 1qhx_A CPT, protein (chloramph 95.6 0.0073 2.5E-07 52.0 3.7 34 90-126 4-37 (178)
95 2yhs_A FTSY, cell division pro 95.6 0.015 5E-07 59.5 6.5 42 88-129 292-333 (503)
96 2hf9_A Probable hydrogenase ni 95.6 0.011 3.6E-07 52.9 4.9 39 90-129 39-77 (226)
97 2i1q_A DNA repair and recombin 95.6 0.0067 2.3E-07 58.0 3.8 58 71-128 78-153 (322)
98 1a7j_A Phosphoribulokinase; tr 95.5 0.0069 2.4E-07 57.5 3.5 41 89-129 5-45 (290)
99 1jbk_A CLPB protein; beta barr 95.5 0.015 5.3E-07 49.5 5.4 29 87-115 41-69 (195)
100 2pbr_A DTMP kinase, thymidylat 95.5 0.016 5.6E-07 50.1 5.4 34 91-124 2-35 (195)
101 2b8t_A Thymidine kinase; deoxy 95.4 0.018 6.3E-07 52.6 5.8 37 88-124 11-47 (223)
102 2z0h_A DTMP kinase, thymidylat 95.4 0.019 6.4E-07 50.0 5.5 35 91-125 2-36 (197)
103 2p65_A Hypothetical protein PF 95.4 0.014 4.7E-07 49.8 4.5 31 86-116 40-70 (187)
104 2kjq_A DNAA-related protein; s 95.3 0.014 4.8E-07 49.6 4.4 37 90-126 37-73 (149)
105 1nlf_A Regulatory protein REPA 95.2 0.013 4.4E-07 54.7 4.3 27 89-115 30-56 (279)
106 2gks_A Bifunctional SAT/APS ki 95.2 0.016 5.5E-07 59.9 5.1 38 89-126 372-409 (546)
107 2orw_A Thymidine kinase; TMTK, 95.2 0.017 5.7E-07 51.0 4.5 36 90-125 4-39 (184)
108 1ly1_A Polynucleotide kinase; 95.1 0.017 5.9E-07 49.4 4.4 33 90-126 3-35 (181)
109 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.0063 2.1E-07 58.9 1.7 47 75-125 108-156 (331)
110 3bs4_A Uncharacterized protein 95.0 0.028 9.5E-07 52.6 5.8 54 73-126 3-58 (260)
111 2plr_A DTMP kinase, probable t 94.9 0.028 9.6E-07 49.4 5.2 34 90-124 5-38 (213)
112 1xx6_A Thymidine kinase; NESG, 94.9 0.037 1.3E-06 49.2 6.0 36 89-124 8-43 (191)
113 1nn5_A Similar to deoxythymidy 94.9 0.029 1E-06 49.4 5.3 36 90-125 10-45 (215)
114 4eun_A Thermoresistant glucoki 94.8 0.024 8.3E-07 50.0 4.7 36 88-128 28-63 (200)
115 1x6v_B Bifunctional 3'-phospho 94.8 0.024 8.3E-07 59.5 5.2 39 88-126 51-89 (630)
116 1gvn_B Zeta; postsegregational 94.7 0.02 6.7E-07 54.1 4.0 36 88-126 32-67 (287)
117 2rhm_A Putative kinase; P-loop 94.7 0.019 6.3E-07 49.9 3.5 33 89-126 5-37 (193)
118 3trf_A Shikimate kinase, SK; a 94.7 0.017 5.9E-07 49.9 3.2 32 90-126 6-37 (185)
119 3cmw_A Protein RECA, recombina 94.7 0.026 8.9E-07 65.4 5.5 59 70-128 361-422 (1706)
120 2ze6_A Isopentenyl transferase 94.7 0.026 8.8E-07 52.2 4.6 33 90-127 2-34 (253)
121 3lw7_A Adenylate kinase relate 94.7 0.015 5.2E-07 49.1 2.7 27 90-120 2-28 (179)
122 2p5t_B PEZT; postsegregational 94.6 0.021 7.2E-07 52.6 3.8 37 88-127 31-67 (253)
123 3lda_A DNA repair protein RAD5 94.6 0.019 6.4E-07 57.1 3.7 57 71-127 158-222 (400)
124 3c8u_A Fructokinase; YP_612366 94.6 0.046 1.6E-06 48.5 5.9 41 88-128 21-61 (208)
125 3cmw_A Protein RECA, recombina 94.6 0.028 9.6E-07 65.1 5.5 59 70-128 710-771 (1706)
126 2axn_A 6-phosphofructo-2-kinas 94.6 0.033 1.1E-06 57.2 5.5 39 88-126 34-72 (520)
127 3t61_A Gluconokinase; PSI-biol 94.5 0.021 7.3E-07 50.3 3.5 34 90-128 19-52 (202)
128 4a74_A DNA repair and recombin 94.5 0.029 9.8E-07 50.0 4.3 55 73-127 7-69 (231)
129 1knq_A Gluconate kinase; ALFA/ 94.5 0.042 1.4E-06 47.0 5.2 34 89-127 8-41 (175)
130 2wwf_A Thymidilate kinase, put 94.4 0.042 1.4E-06 48.4 5.2 35 90-124 11-45 (212)
131 1tev_A UMP-CMP kinase; ploop, 94.4 0.032 1.1E-06 48.2 4.3 33 89-126 3-35 (196)
132 1m8p_A Sulfate adenylyltransfe 94.4 0.032 1.1E-06 58.0 5.0 39 89-127 396-435 (573)
133 2chg_A Replication factor C sm 94.3 0.024 8.1E-07 49.5 3.3 47 79-125 28-74 (226)
134 3ld9_A DTMP kinase, thymidylat 94.3 0.041 1.4E-06 50.2 5.0 43 87-129 19-62 (223)
135 1l8q_A Chromosomal replication 94.3 0.041 1.4E-06 52.2 5.2 36 91-126 39-74 (324)
136 4edh_A DTMP kinase, thymidylat 94.2 0.055 1.9E-06 48.9 5.5 39 89-128 6-44 (213)
137 3cmu_A Protein RECA, recombina 94.2 0.033 1.1E-06 65.4 5.0 55 73-127 1408-1465(2050)
138 1qf9_A UMP/CMP kinase, protein 94.2 0.036 1.2E-06 47.8 4.1 33 89-126 6-38 (194)
139 3n70_A Transport activator; si 94.2 0.021 7.3E-07 47.8 2.5 34 92-126 27-60 (145)
140 3vaa_A Shikimate kinase, SK; s 94.1 0.028 9.7E-07 49.5 3.4 32 90-126 26-57 (199)
141 3tqc_A Pantothenate kinase; bi 94.1 0.054 1.8E-06 52.2 5.5 42 88-129 91-134 (321)
142 1zp6_A Hypothetical protein AT 94.1 0.037 1.3E-06 48.0 4.0 35 89-126 9-43 (191)
143 1odf_A YGR205W, hypothetical 3 94.0 0.04 1.4E-06 52.2 4.4 42 88-129 30-74 (290)
144 1gtv_A TMK, thymidylate kinase 94.0 0.014 4.8E-07 51.6 1.1 35 91-125 2-36 (214)
145 2qby_B CDC6 homolog 3, cell di 94.0 0.043 1.5E-06 52.9 4.7 40 87-126 43-90 (384)
146 1pzn_A RAD51, DNA repair and r 94.0 0.04 1.4E-06 53.6 4.4 57 71-127 111-175 (349)
147 2r2a_A Uncharacterized protein 93.9 0.036 1.2E-06 49.6 3.7 37 90-126 6-48 (199)
148 2www_A Methylmalonic aciduria 93.9 0.083 2.9E-06 51.3 6.6 42 89-130 74-115 (349)
149 3cm0_A Adenylate kinase; ATP-b 93.9 0.043 1.5E-06 47.3 4.1 32 90-126 5-36 (186)
150 1y63_A LMAJ004144AAA protein; 93.9 0.039 1.3E-06 48.0 3.8 33 90-126 11-43 (184)
151 2v54_A DTMP kinase, thymidylat 93.9 0.03 1E-06 49.0 3.1 34 90-125 5-38 (204)
152 2c95_A Adenylate kinase 1; tra 93.9 0.039 1.3E-06 47.9 3.7 32 90-126 10-41 (196)
153 3kb2_A SPBC2 prophage-derived 93.9 0.036 1.2E-06 46.9 3.4 32 91-127 3-34 (173)
154 1e6c_A Shikimate kinase; phosp 93.8 0.036 1.2E-06 47.2 3.4 31 91-126 4-34 (173)
155 3cmu_A Protein RECA, recombina 93.8 0.043 1.5E-06 64.5 5.0 57 72-128 363-422 (2050)
156 3lv8_A DTMP kinase, thymidylat 93.8 0.072 2.5E-06 49.0 5.5 40 89-128 27-66 (236)
157 2v1u_A Cell division control p 93.8 0.05 1.7E-06 52.2 4.6 41 88-128 43-89 (387)
158 1via_A Shikimate kinase; struc 93.7 0.036 1.2E-06 47.6 3.2 31 91-126 6-36 (175)
159 1uf9_A TT1252 protein; P-loop, 93.6 0.034 1.2E-06 48.6 2.9 33 88-126 7-39 (203)
160 1sq5_A Pantothenate kinase; P- 93.6 0.064 2.2E-06 51.0 5.0 42 88-129 79-122 (308)
161 3d3q_A TRNA delta(2)-isopenten 93.6 0.054 1.8E-06 52.6 4.5 34 90-128 8-41 (340)
162 1ukz_A Uridylate kinase; trans 93.6 0.049 1.7E-06 47.8 3.8 34 88-126 14-47 (203)
163 2bwj_A Adenylate kinase 5; pho 93.5 0.043 1.5E-06 47.7 3.4 32 90-126 13-44 (199)
164 1g8f_A Sulfate adenylyltransfe 93.5 0.054 1.8E-06 55.5 4.6 39 89-127 395-435 (511)
165 3t15_A Ribulose bisphosphate c 93.5 0.055 1.9E-06 51.1 4.3 33 90-125 37-69 (293)
166 2j9r_A Thymidine kinase; TK1, 93.5 0.11 3.7E-06 47.2 6.1 37 88-124 27-63 (214)
167 3iij_A Coilin-interacting nucl 93.5 0.043 1.5E-06 47.3 3.3 32 90-126 12-43 (180)
168 2iyv_A Shikimate kinase, SK; t 93.5 0.031 1.1E-06 48.3 2.4 31 91-126 4-34 (184)
169 2grj_A Dephospho-COA kinase; T 93.5 0.062 2.1E-06 47.7 4.3 34 88-126 11-44 (192)
170 1fnn_A CDC6P, cell division co 93.4 0.081 2.8E-06 50.9 5.5 40 91-130 46-86 (389)
171 4b3f_X DNA-binding protein smu 93.4 0.078 2.7E-06 55.7 5.7 36 90-125 206-241 (646)
172 2pt5_A Shikimate kinase, SK; a 93.4 0.049 1.7E-06 46.1 3.4 31 91-126 2-32 (168)
173 2obn_A Hypothetical protein; s 93.3 0.46 1.6E-05 46.2 10.6 38 88-125 152-189 (349)
174 2cdn_A Adenylate kinase; phosp 93.3 0.056 1.9E-06 47.5 3.9 34 88-126 19-52 (201)
175 4tmk_A Protein (thymidylate ki 93.3 0.099 3.4E-06 47.2 5.5 40 89-129 3-43 (213)
176 3upu_A ATP-dependent DNA helic 93.3 0.064 2.2E-06 53.9 4.7 34 91-124 47-81 (459)
177 1kag_A SKI, shikimate kinase I 93.3 0.041 1.4E-06 46.8 2.9 32 90-126 5-36 (173)
178 1aky_A Adenylate kinase; ATP:A 93.3 0.059 2E-06 48.1 4.0 32 90-126 5-36 (220)
179 3e1s_A Exodeoxyribonuclease V, 93.2 0.077 2.6E-06 55.1 5.3 36 89-124 204-239 (574)
180 3hjn_A DTMP kinase, thymidylat 93.2 0.1 3.5E-06 46.3 5.4 35 91-125 2-36 (197)
181 3foz_A TRNA delta(2)-isopenten 93.1 0.11 3.7E-06 49.9 5.7 35 88-127 9-43 (316)
182 4fcw_A Chaperone protein CLPB; 93.1 0.083 2.8E-06 49.4 4.9 38 90-127 48-85 (311)
183 4eaq_A DTMP kinase, thymidylat 93.1 0.087 3E-06 47.9 4.8 36 88-124 25-60 (229)
184 3crm_A TRNA delta(2)-isopenten 93.0 0.084 2.9E-06 50.9 4.8 35 89-128 5-39 (323)
185 3be4_A Adenylate kinase; malar 93.0 0.056 1.9E-06 48.3 3.4 32 90-126 6-37 (217)
186 2qby_A CDC6 homolog 1, cell di 93.0 0.067 2.3E-06 51.2 4.1 39 88-126 44-85 (386)
187 3tlx_A Adenylate kinase 2; str 93.0 0.082 2.8E-06 48.4 4.5 34 88-126 28-61 (243)
188 1w5s_A Origin recognition comp 93.0 0.095 3.3E-06 50.9 5.3 43 88-130 49-99 (412)
189 3v9p_A DTMP kinase, thymidylat 93.0 0.075 2.6E-06 48.6 4.2 36 89-124 25-64 (227)
190 3syl_A Protein CBBX; photosynt 92.9 0.089 3E-06 49.2 4.7 35 91-125 69-107 (309)
191 3exa_A TRNA delta(2)-isopenten 92.9 0.083 2.9E-06 50.8 4.5 34 89-127 3-36 (322)
192 1ak2_A Adenylate kinase isoenz 92.8 0.078 2.7E-06 47.9 4.1 32 90-126 17-48 (233)
193 3fb4_A Adenylate kinase; psych 92.7 0.066 2.3E-06 47.5 3.4 30 92-126 3-32 (216)
194 2qt1_A Nicotinamide riboside k 92.7 0.058 2E-06 47.6 2.9 36 89-128 21-56 (207)
195 2if2_A Dephospho-COA kinase; a 92.7 0.055 1.9E-06 47.5 2.8 30 91-126 3-32 (204)
196 1zd8_A GTP:AMP phosphotransfer 92.6 0.053 1.8E-06 48.7 2.6 32 90-126 8-39 (227)
197 2qm8_A GTPase/ATPase; G protei 92.5 0.17 5.8E-06 48.8 6.2 41 89-129 55-95 (337)
198 3a8t_A Adenylate isopentenyltr 92.5 0.081 2.8E-06 51.4 3.9 35 89-128 40-74 (339)
199 3asz_A Uridine kinase; cytidin 92.5 0.098 3.4E-06 46.1 4.2 37 89-128 6-42 (211)
200 2bjv_A PSP operon transcriptio 92.5 0.073 2.5E-06 48.9 3.4 35 92-126 32-66 (265)
201 2z4s_A Chromosomal replication 92.4 0.096 3.3E-06 52.5 4.5 37 90-126 131-169 (440)
202 1ltq_A Polynucleotide kinase; 92.3 0.086 2.9E-06 49.3 3.8 33 90-126 3-35 (301)
203 1tf7_A KAIC; homohexamer, hexa 92.1 0.16 5.5E-06 51.9 5.8 51 76-126 266-318 (525)
204 2vli_A Antibiotic resistance p 92.1 0.053 1.8E-06 46.5 1.9 29 90-121 6-34 (183)
205 2xb4_A Adenylate kinase; ATP-b 92.1 0.11 3.7E-06 46.7 4.0 31 91-126 2-32 (223)
206 3dl0_A Adenylate kinase; phosp 92.0 0.07 2.4E-06 47.3 2.6 30 92-126 3-32 (216)
207 2f1r_A Molybdopterin-guanine d 91.9 0.12 4.1E-06 45.0 3.9 36 92-127 5-40 (171)
208 3zvl_A Bifunctional polynucleo 91.9 0.1 3.5E-06 51.9 3.8 36 87-127 256-291 (416)
209 1ofh_A ATP-dependent HSL prote 91.8 0.16 5.6E-06 47.1 5.1 32 92-126 53-84 (310)
210 1vht_A Dephospho-COA kinase; s 91.7 0.13 4.6E-06 45.6 4.2 32 89-126 4-35 (218)
211 3umf_A Adenylate kinase; rossm 91.6 0.14 4.8E-06 46.4 4.2 26 88-113 28-53 (217)
212 1zuh_A Shikimate kinase; alpha 91.5 0.13 4.4E-06 43.6 3.7 32 90-126 8-39 (168)
213 2qz4_A Paraplegin; AAA+, SPG7, 91.5 0.22 7.6E-06 45.1 5.5 33 91-126 41-73 (262)
214 1jjv_A Dephospho-COA kinase; P 91.5 0.096 3.3E-06 46.1 2.9 31 90-126 3-33 (206)
215 2f6r_A COA synthase, bifunctio 91.4 0.14 4.7E-06 48.0 4.1 33 88-126 74-106 (281)
216 2jaq_A Deoxyguanosine kinase; 91.3 0.13 4.6E-06 44.6 3.7 23 91-113 2-24 (205)
217 1e4v_A Adenylate kinase; trans 91.3 0.12 4E-06 46.0 3.3 30 92-126 3-32 (214)
218 1zak_A Adenylate kinase; ATP:A 91.2 0.098 3.3E-06 46.7 2.7 24 90-113 6-29 (222)
219 2qor_A Guanylate kinase; phosp 91.2 0.085 2.9E-06 46.6 2.3 24 90-113 13-36 (204)
220 2rdo_7 EF-G, elongation factor 91.2 0.71 2.4E-05 49.1 9.7 40 291-331 107-146 (704)
221 3eph_A TRNA isopentenyltransfe 91.1 0.21 7.1E-06 49.7 5.1 34 89-127 2-35 (409)
222 3aez_A Pantothenate kinase; tr 91.1 0.26 9E-06 47.0 5.7 42 88-129 89-132 (312)
223 3ney_A 55 kDa erythrocyte memb 91.0 0.13 4.5E-06 45.9 3.4 27 86-112 16-42 (197)
224 2orv_A Thymidine kinase; TP4A 91.0 0.28 9.6E-06 45.0 5.6 36 89-124 19-54 (234)
225 1w36_D RECD, exodeoxyribonucle 91.0 0.19 6.4E-06 52.5 4.9 35 89-123 164-202 (608)
226 4hlc_A DTMP kinase, thymidylat 90.9 0.25 8.5E-06 44.2 5.0 34 90-124 3-36 (205)
227 2jeo_A Uridine-cytidine kinase 90.8 0.24 8.1E-06 45.1 4.9 40 88-127 24-68 (245)
228 1bif_A 6-phosphofructo-2-kinas 90.7 0.25 8.6E-06 49.7 5.4 39 88-126 38-76 (469)
229 1d2n_A N-ethylmaleimide-sensit 90.5 0.32 1.1E-05 44.7 5.6 36 87-125 62-97 (272)
230 1tue_A Replication protein E1; 90.5 0.14 4.8E-06 46.3 3.0 35 79-113 47-82 (212)
231 3ake_A Cytidylate kinase; CMP 90.5 0.14 4.7E-06 44.8 2.9 31 91-126 4-34 (208)
232 1c9k_A COBU, adenosylcobinamid 90.4 0.13 4.4E-06 45.4 2.6 31 92-126 2-32 (180)
233 4ag6_A VIRB4 ATPase, type IV s 90.2 0.29 1E-05 47.8 5.3 37 88-126 36-72 (392)
234 1kgd_A CASK, peripheral plasma 90.2 0.16 5.5E-06 43.9 3.1 25 89-113 5-29 (180)
235 3tau_A Guanylate kinase, GMP k 90.2 0.17 5.7E-06 45.0 3.2 25 89-113 8-32 (208)
236 3sr0_A Adenylate kinase; phosp 90.2 0.19 6.5E-06 45.0 3.6 23 91-113 2-24 (206)
237 1um8_A ATP-dependent CLP prote 90.2 0.24 8.1E-06 48.0 4.6 32 92-126 75-106 (376)
238 1lv7_A FTSH; alpha/beta domain 90.0 0.28 9.7E-06 44.6 4.8 31 92-125 48-78 (257)
239 1hqc_A RUVB; extended AAA-ATPa 90.0 0.23 7.8E-06 46.6 4.2 43 91-136 40-82 (324)
240 2r44_A Uncharacterized protein 89.9 0.24 8.3E-06 46.9 4.4 43 92-137 49-91 (331)
241 3te6_A Regulatory protein SIR3 89.8 0.29 9.8E-06 47.0 4.8 33 84-116 40-72 (318)
242 2bdt_A BH3686; alpha-beta prot 89.7 0.21 7.2E-06 43.1 3.5 33 90-126 3-35 (189)
243 1njg_A DNA polymerase III subu 89.7 0.22 7.5E-06 43.6 3.6 27 90-116 46-72 (250)
244 2h5e_A Peptide chain release f 89.7 0.31 1.1E-05 50.0 5.2 41 290-331 106-146 (529)
245 3cr8_A Sulfate adenylyltranfer 89.7 0.21 7.1E-06 51.7 3.9 40 88-127 368-408 (552)
246 3pxg_A Negative regulator of g 89.6 0.24 8E-06 50.0 4.2 35 91-125 203-244 (468)
247 2gk6_A Regulator of nonsense t 89.3 0.33 1.1E-05 50.8 5.2 36 90-125 196-232 (624)
248 3h4m_A Proteasome-activating n 89.3 0.26 9E-06 45.4 3.9 32 91-125 53-84 (285)
249 2j41_A Guanylate kinase; GMP, 89.1 0.23 7.7E-06 43.3 3.2 24 90-113 7-30 (207)
250 3r20_A Cytidylate kinase; stru 88.9 0.28 9.7E-06 44.9 3.8 33 89-126 9-41 (233)
251 1iqp_A RFCS; clamp loader, ext 88.9 0.16 5.6E-06 47.4 2.2 33 92-124 49-83 (327)
252 1sxj_A Activator 1 95 kDa subu 88.8 0.27 9.3E-06 50.1 4.0 34 90-126 78-111 (516)
253 2eyu_A Twitching motility prot 88.8 0.47 1.6E-05 44.0 5.3 39 88-126 24-63 (261)
254 1cke_A CK, MSSA, protein (cyti 88.7 0.27 9.3E-06 43.6 3.5 31 91-126 7-37 (227)
255 1ojl_A Transcriptional regulat 88.7 0.2 6.8E-06 47.4 2.7 35 92-126 28-62 (304)
256 3hws_A ATP-dependent CLP prote 88.7 0.33 1.1E-05 46.8 4.3 31 92-125 54-84 (363)
257 1z6t_A APAF-1, apoptotic prote 88.6 0.25 8.7E-06 50.6 3.7 41 88-128 146-190 (591)
258 3u61_B DNA polymerase accessor 88.5 0.3 1E-05 46.1 3.8 44 80-126 38-82 (324)
259 2a5y_B CED-4; apoptosis; HET: 88.5 0.27 9.2E-06 50.4 3.7 24 88-111 151-174 (549)
260 1sxj_B Activator 1 37 kDa subu 88.4 0.19 6.4E-06 46.9 2.3 34 92-125 45-80 (323)
261 3tr0_A Guanylate kinase, GMP k 88.3 0.28 9.6E-06 42.7 3.2 24 90-113 8-31 (205)
262 2bbw_A Adenylate kinase 4, AK4 88.1 0.33 1.1E-05 44.0 3.7 24 90-113 28-51 (246)
263 3ch4_B Pmkase, phosphomevalona 87.9 0.39 1.3E-05 43.1 3.9 26 88-113 10-35 (202)
264 1xwi_A SKD1 protein; VPS4B, AA 87.7 0.39 1.3E-05 45.8 4.1 33 91-125 47-79 (322)
265 3jvv_A Twitching mobility prot 87.7 0.73 2.5E-05 44.8 6.1 43 81-124 116-159 (356)
266 1ex7_A Guanylate kinase; subst 87.7 0.22 7.7E-06 43.9 2.2 21 91-111 3-23 (186)
267 1q3t_A Cytidylate kinase; nucl 87.6 0.41 1.4E-05 43.1 4.0 32 90-126 17-48 (236)
268 3b9p_A CG5977-PA, isoform A; A 87.4 0.41 1.4E-05 44.4 4.0 32 91-125 56-87 (297)
269 4a0g_A Adenosylmethionine-8-am 87.4 0.48 1.7E-05 51.3 5.0 37 88-124 34-75 (831)
270 2wjy_A Regulator of nonsense t 87.3 0.5 1.7E-05 51.0 5.1 35 90-124 372-407 (800)
271 1sxj_C Activator 1 40 kDa subu 87.3 0.26 8.9E-06 47.0 2.6 36 92-127 49-84 (340)
272 2qmh_A HPR kinase/phosphorylas 87.1 0.36 1.2E-05 43.4 3.2 32 89-126 34-65 (205)
273 2ewv_A Twitching motility prot 87.1 0.67 2.3E-05 45.2 5.5 38 88-125 135-173 (372)
274 3nwj_A ATSK2; P loop, shikimat 87.0 0.37 1.2E-05 44.5 3.3 32 90-126 49-80 (250)
275 3eie_A Vacuolar protein sortin 87.0 0.48 1.6E-05 44.9 4.2 32 91-125 53-84 (322)
276 2qp9_X Vacuolar protein sortin 86.9 0.48 1.6E-05 45.8 4.2 31 92-125 87-117 (355)
277 3d8b_A Fidgetin-like protein 1 86.7 0.46 1.6E-05 45.9 4.0 32 91-125 119-150 (357)
278 3pxi_A Negative regulator of g 86.7 0.56 1.9E-05 50.0 5.1 36 91-126 523-558 (758)
279 1qvr_A CLPB protein; coiled co 86.7 0.42 1.4E-05 51.8 4.1 35 91-125 193-234 (854)
280 3a00_A Guanylate kinase, GMP k 86.7 0.3 1E-05 42.4 2.4 24 91-114 3-26 (186)
281 2chq_A Replication factor C sm 86.6 0.23 7.7E-06 46.2 1.6 34 92-125 41-76 (319)
282 3cf0_A Transitional endoplasmi 86.5 0.43 1.5E-05 44.8 3.6 32 90-124 50-81 (301)
283 2fna_A Conserved hypothetical 86.3 0.66 2.2E-05 43.5 4.8 35 90-127 31-65 (357)
284 1in4_A RUVB, holliday junction 86.2 0.42 1.5E-05 45.6 3.4 23 91-113 53-75 (334)
285 1d2e_A Elongation factor TU (E 86.0 1.6 5.6E-05 42.7 7.7 41 290-330 90-130 (397)
286 1p9r_A General secretion pathw 86.0 0.88 3E-05 45.2 5.7 40 87-126 165-204 (418)
287 3tqf_A HPR(Ser) kinase; transf 85.9 0.57 2E-05 41.2 3.8 27 89-119 16-42 (181)
288 1s1m_A CTP synthase; CTP synth 85.6 1 3.4E-05 46.4 6.0 44 89-132 4-48 (545)
289 1sxj_D Activator 1 41 kDa subu 85.5 0.59 2E-05 44.2 4.0 24 92-115 61-84 (353)
290 3pfi_A Holliday junction ATP-d 85.4 0.7 2.4E-05 43.7 4.5 34 91-127 57-90 (338)
291 3uk6_A RUVB-like 2; hexameric 85.4 0.43 1.5E-05 45.6 3.0 25 90-114 71-95 (368)
292 2ocp_A DGK, deoxyguanosine kin 85.4 0.44 1.5E-05 43.0 2.9 24 90-113 3-26 (241)
293 2xzl_A ATP-dependent helicase 85.3 0.69 2.4E-05 49.9 4.9 36 90-125 376-412 (802)
294 2r62_A Cell division protease 85.2 0.31 1.1E-05 44.5 1.9 22 92-113 47-68 (268)
295 4b4t_K 26S protease regulatory 85.2 0.78 2.7E-05 45.8 4.9 34 89-125 206-239 (428)
296 1e9r_A Conjugal transfer prote 85.2 0.7 2.4E-05 45.6 4.6 36 88-125 54-89 (437)
297 3e2i_A Thymidine kinase; Zn-bi 85.2 1.1 3.9E-05 40.5 5.5 37 88-124 27-63 (219)
298 2npi_A Protein CLP1; CLP1-PCF1 85.0 0.37 1.3E-05 48.6 2.4 44 92-135 141-185 (460)
299 1s96_A Guanylate kinase, GMP k 84.9 0.52 1.8E-05 42.5 3.1 25 89-113 16-40 (219)
300 2c9o_A RUVB-like 1; hexameric 84.8 0.52 1.8E-05 47.1 3.4 34 91-125 65-98 (456)
301 1ixz_A ATP-dependent metallopr 84.8 0.48 1.7E-05 42.9 2.9 22 92-113 52-73 (254)
302 1vt4_I APAF-1 related killer D 84.7 0.99 3.4E-05 50.3 5.7 44 88-131 149-195 (1221)
303 2i3b_A HCR-ntpase, human cance 84.7 0.68 2.3E-05 40.7 3.7 26 92-117 4-29 (189)
304 3hdt_A Putative kinase; struct 84.7 0.67 2.3E-05 42.0 3.8 35 87-126 12-46 (223)
305 1w4r_A Thymidine kinase; type 84.7 1.4 4.6E-05 39.3 5.7 38 88-125 19-56 (195)
306 1ye8_A Protein THEP1, hypothet 84.4 0.7 2.4E-05 40.1 3.7 22 92-113 3-24 (178)
307 1vco_A CTP synthetase; tetrame 84.4 1.2 4.1E-05 45.9 5.9 44 89-132 13-57 (550)
308 2vp4_A Deoxynucleoside kinase; 84.4 0.58 2E-05 42.0 3.3 34 88-125 19-52 (230)
309 4e22_A Cytidylate kinase; P-lo 84.3 0.57 2E-05 42.8 3.2 24 90-113 28-51 (252)
310 4gp7_A Metallophosphoesterase; 84.3 0.54 1.9E-05 40.2 2.9 20 89-108 9-28 (171)
311 2ga8_A Hypothetical 39.9 kDa p 84.3 0.89 3E-05 44.3 4.7 31 84-114 19-49 (359)
312 3pvs_A Replication-associated 84.2 0.56 1.9E-05 47.0 3.3 34 80-113 41-74 (447)
313 1lvg_A Guanylate kinase, GMP k 83.7 0.59 2E-05 41.1 2.9 24 90-113 5-28 (198)
314 1qvr_A CLPB protein; coiled co 83.7 0.68 2.3E-05 50.2 3.9 38 90-127 589-626 (854)
315 2zan_A Vacuolar protein sortin 83.1 0.7 2.4E-05 46.1 3.5 34 90-125 168-201 (444)
316 1p5z_B DCK, deoxycytidine kina 83.0 0.27 9.4E-06 45.1 0.4 26 88-113 23-48 (263)
317 3co5_A Putative two-component 83.0 0.24 8.1E-06 41.2 -0.0 21 92-112 30-50 (143)
318 1nij_A Hypothetical protein YJ 82.9 0.72 2.5E-05 43.8 3.4 38 89-128 4-41 (318)
319 3tmk_A Thymidylate kinase; pho 82.7 0.79 2.7E-05 41.3 3.4 33 89-124 5-37 (216)
320 1jr3_A DNA polymerase III subu 82.6 0.83 2.8E-05 43.5 3.7 25 91-115 40-64 (373)
321 1iy2_A ATP-dependent metallopr 82.5 0.67 2.3E-05 42.7 2.9 22 92-113 76-97 (278)
322 3pxi_A Negative regulator of g 82.5 0.88 3E-05 48.5 4.2 24 92-115 204-227 (758)
323 3kta_A Chromosome segregation 82.4 0.7 2.4E-05 39.4 2.8 24 91-114 28-51 (182)
324 2x8a_A Nuclear valosin-contain 82.2 0.69 2.4E-05 43.0 2.9 31 92-125 47-77 (274)
325 2qen_A Walker-type ATPase; unk 82.1 0.99 3.4E-05 42.2 4.0 33 90-127 32-64 (350)
326 1g41_A Heat shock protein HSLU 81.9 1.2 4E-05 44.8 4.6 31 92-125 53-83 (444)
327 3vfd_A Spastin; ATPase, microt 81.8 1.1 3.6E-05 43.7 4.2 33 90-125 149-181 (389)
328 3ice_A Transcription terminati 81.8 1.5 5.1E-05 43.5 5.2 45 74-119 159-204 (422)
329 2vo1_A CTP synthase 1; pyrimid 81.6 2.7 9.4E-05 39.2 6.6 46 88-133 23-69 (295)
330 4b4t_M 26S protease regulatory 81.4 0.97 3.3E-05 45.2 3.8 34 89-125 215-248 (434)
331 2h92_A Cytidylate kinase; ross 81.4 0.68 2.3E-05 40.8 2.4 32 90-126 4-35 (219)
332 1sky_E F1-ATPase, F1-ATP synth 81.3 1.6 5.3E-05 44.2 5.2 43 72-115 134-177 (473)
333 1znw_A Guanylate kinase, GMP k 81.2 0.87 3E-05 40.0 3.1 25 89-113 20-44 (207)
334 1sxj_E Activator 1 40 kDa subu 81.0 0.67 2.3E-05 44.0 2.4 24 92-115 39-62 (354)
335 4b4t_L 26S protease subunit RP 81.0 1 3.5E-05 45.1 3.8 33 90-125 216-248 (437)
336 3fdi_A Uncharacterized protein 81.0 0.77 2.7E-05 40.6 2.6 33 89-126 6-38 (201)
337 3m6a_A ATP-dependent protease 80.9 1.3 4.6E-05 45.3 4.7 35 89-126 108-142 (543)
338 1r6b_X CLPA protein; AAA+, N-t 80.7 1.2 4.2E-05 47.3 4.5 44 91-137 490-536 (758)
339 3do6_A Formate--tetrahydrofola 80.6 3.1 0.0001 42.0 6.9 42 97-140 55-96 (543)
340 3lnc_A Guanylate kinase, GMP k 80.6 0.61 2.1E-05 41.7 1.8 24 90-113 28-52 (231)
341 2c5m_A CTP synthase; cytidine 80.2 1.9 6.5E-05 40.0 4.9 46 87-132 22-68 (294)
342 4i1u_A Dephospho-COA kinase; s 80.2 1.2 4E-05 40.1 3.5 29 92-126 12-40 (210)
343 1dar_A EF-G, elongation factor 80.0 6.6 0.00023 41.4 9.9 40 291-331 102-141 (691)
344 4b4t_J 26S protease regulatory 79.9 1.1 3.7E-05 44.5 3.4 33 90-125 183-215 (405)
345 1htw_A HI0065; nucleotide-bind 79.9 1.2 4E-05 38.0 3.3 26 88-113 32-57 (158)
346 1z6g_A Guanylate kinase; struc 79.9 0.84 2.9E-05 40.7 2.5 24 90-113 24-47 (218)
347 3con_A GTPase NRAS; structural 79.7 1.1 3.9E-05 37.9 3.2 20 92-111 24-43 (190)
348 1g8p_A Magnesium-chelatase 38 79.4 0.61 2.1E-05 44.1 1.5 23 92-114 48-70 (350)
349 3b6e_A Interferon-induced heli 79.3 1.3 4.3E-05 38.5 3.4 32 92-123 51-88 (216)
350 2ce2_X GTPase HRAS; signaling 79.2 0.96 3.3E-05 36.9 2.5 39 291-330 76-119 (166)
351 1svm_A Large T antigen; AAA+ f 79.0 1.3 4.4E-05 43.4 3.7 26 88-113 168-193 (377)
352 1r6b_X CLPA protein; AAA+, N-t 78.5 1.9 6.7E-05 45.7 5.2 34 84-117 202-235 (758)
353 4b4t_H 26S protease regulatory 78.3 1.4 4.6E-05 44.5 3.6 35 88-125 242-276 (467)
354 3ihw_A Centg3; RAS, centaurin, 78.2 1.6 5.5E-05 37.2 3.7 38 291-329 87-129 (184)
355 1tf7_A KAIC; homohexamer, hexa 78.0 1.9 6.4E-05 43.9 4.7 52 76-127 24-78 (525)
356 2wji_A Ferrous iron transport 78.0 1.5 5.3E-05 36.5 3.5 36 291-329 83-118 (165)
357 1u0j_A DNA replication protein 77.8 1.6 5.4E-05 40.8 3.8 34 80-113 93-128 (267)
358 3sfz_A APAF-1, apoptotic pepti 77.7 1.1 3.9E-05 49.5 3.2 41 87-127 145-189 (1249)
359 2dyk_A GTP-binding protein; GT 77.7 1.3 4.5E-05 36.1 2.9 38 291-329 81-118 (161)
360 4gzl_A RAS-related C3 botulinu 77.5 1.3 4.5E-05 38.5 3.0 38 291-329 103-144 (204)
361 3hu3_A Transitional endoplasmi 77.2 1.4 4.7E-05 44.7 3.4 32 91-125 240-271 (489)
362 1z2a_A RAS-related protein RAB 77.1 1.4 4.7E-05 36.2 2.9 38 291-329 79-119 (168)
363 1a5t_A Delta prime, HOLB; zinc 77.1 1.6 5.6E-05 41.4 3.8 27 90-116 25-51 (334)
364 1f2t_A RAD50 ABC-ATPase; DNA d 77.0 1.9 6.3E-05 36.2 3.7 25 90-114 24-48 (149)
365 2v9p_A Replication protein E1; 76.7 1.8 6.1E-05 41.2 3.8 24 90-113 127-150 (305)
366 2ce7_A Cell division protein F 76.6 2.5 8.4E-05 42.7 5.1 31 92-125 52-82 (476)
367 1knx_A Probable HPR(Ser) kinas 76.6 1.5 5.1E-05 41.9 3.2 28 88-119 146-173 (312)
368 1dek_A Deoxynucleoside monopho 76.6 1.6 5.6E-05 39.9 3.4 28 90-120 2-29 (241)
369 2yv5_A YJEQ protein; hydrolase 76.3 1.6 5.5E-05 41.1 3.4 32 79-110 155-186 (302)
370 1rif_A DAR protein, DNA helica 76.2 1.9 6.6E-05 39.6 3.9 31 93-123 132-163 (282)
371 3orf_A Dihydropteridine reduct 76.1 2.1 7.3E-05 38.6 4.1 40 84-128 18-57 (251)
372 2wjg_A FEOB, ferrous iron tran 76.0 2 6.8E-05 36.2 3.7 21 90-110 8-28 (188)
373 4b4t_I 26S protease regulatory 75.9 1.7 5.8E-05 43.4 3.5 34 89-125 216-249 (437)
374 3nva_A CTP synthase; rossman f 75.7 4.2 0.00014 41.5 6.5 44 89-132 4-48 (535)
375 3lfu_A DNA helicase II; SF1 he 75.7 2.1 7.1E-05 44.2 4.4 32 94-125 27-62 (647)
376 3ijr_A Oxidoreductase, short c 75.5 4 0.00014 37.8 5.9 36 88-128 47-82 (291)
377 2zej_A Dardarin, leucine-rich 75.5 1.3 4.6E-05 37.6 2.4 18 93-110 6-23 (184)
378 1svi_A GTP-binding protein YSX 75.4 1.8 6.2E-05 36.7 3.3 37 291-329 107-144 (195)
379 2atv_A RERG, RAS-like estrogen 75.1 2.1 7.3E-05 36.6 3.6 38 291-329 100-142 (196)
380 2fz4_A DNA repair protein RAD2 75.1 2 6.9E-05 38.8 3.6 30 92-124 111-140 (237)
381 3qks_A DNA double-strand break 74.7 2.2 7.5E-05 37.6 3.7 26 90-115 24-49 (203)
382 2lkc_A Translation initiation 74.5 2.1 7.1E-05 35.6 3.4 39 291-330 80-118 (178)
383 2dhr_A FTSH; AAA+ protein, hex 74.3 2.6 8.8E-05 42.9 4.5 31 92-125 67-97 (499)
384 3oes_A GTPase rhebl1; small GT 74.2 1.7 5.9E-05 37.4 2.8 19 92-110 27-45 (201)
385 1zd9_A ADP-ribosylation factor 74.2 1.5 5.1E-05 37.4 2.4 39 291-330 92-135 (188)
386 3k1j_A LON protease, ATP-depen 74.1 1.7 6E-05 45.0 3.3 39 91-129 62-100 (604)
387 1u8z_A RAS-related protein RAL 73.9 1.9 6.4E-05 35.2 2.9 38 291-329 77-119 (168)
388 1e2k_A Thymidine kinase; trans 73.8 2.1 7.2E-05 41.2 3.5 36 89-127 4-39 (331)
389 3c5c_A RAS-like protein 12; GD 73.5 2.4 8.1E-05 36.1 3.5 38 291-329 93-137 (187)
390 2erx_A GTP-binding protein DI- 73.4 2 6.8E-05 35.3 2.9 38 291-329 76-119 (172)
391 3gmt_A Adenylate kinase; ssgci 73.3 2.3 7.7E-05 38.8 3.4 21 93-113 12-32 (230)
392 2b6h_A ADP-ribosylation factor 73.1 2.5 8.6E-05 36.2 3.6 39 291-330 98-141 (192)
393 2gno_A DNA polymerase III, gam 73.1 2.6 9E-05 39.8 4.0 47 80-126 9-58 (305)
394 1of1_A Thymidine kinase; trans 73.0 2.6 8.8E-05 41.3 4.0 37 88-127 48-84 (376)
395 2v6i_A RNA helicase; membrane, 73.0 2.2 7.6E-05 42.1 3.6 35 90-124 3-38 (431)
396 2ged_A SR-beta, signal recogni 72.7 2.1 7.1E-05 36.4 2.9 20 91-110 50-69 (193)
397 2gj8_A MNME, tRNA modification 72.4 2.2 7.6E-05 35.9 3.0 19 92-110 7-25 (172)
398 3lxx_A GTPase IMAP family memb 72.1 2.5 8.7E-05 37.7 3.5 20 91-110 31-50 (239)
399 2p5s_A RAS and EF-hand domain 72.0 2.6 9E-05 36.1 3.5 38 291-329 102-143 (199)
400 2h57_A ADP-ribosylation factor 72.0 1.9 6.3E-05 36.7 2.5 39 291-330 92-137 (190)
401 2nzj_A GTP-binding protein REM 71.9 2.2 7.7E-05 35.2 2.9 39 291-330 79-122 (175)
402 2q3h_A RAS homolog gene family 71.3 2.8 9.5E-05 35.8 3.5 19 92-110 23-41 (201)
403 1z08_A RAS-related protein RAB 71.3 2.4 8.1E-05 34.8 2.9 19 92-110 9-27 (170)
404 1pui_A ENGB, probable GTP-bind 71.2 2 6.7E-05 37.1 2.4 21 89-109 26-46 (210)
405 1kao_A RAP2A; GTP-binding prot 71.2 2.4 8.3E-05 34.5 2.9 19 92-110 6-24 (167)
406 2f9l_A RAB11B, member RAS onco 70.8 2.4 8.1E-05 36.5 2.9 20 92-111 8-27 (199)
407 1z0j_A RAB-22, RAS-related pro 70.7 2.5 8.5E-05 34.6 2.9 39 291-329 80-121 (170)
408 1mv5_A LMRA, multidrug resista 70.7 2.5 8.5E-05 38.4 3.1 33 90-122 29-61 (243)
409 1hv8_A Putative ATP-dependent 70.6 4.5 0.00015 37.7 5.0 34 91-124 46-81 (367)
410 2gza_A Type IV secretion syste 70.4 1.3 4.3E-05 43.0 1.1 33 91-124 177-209 (361)
411 2h17_A ADP-ribosylation factor 70.4 1.9 6.5E-05 36.4 2.1 38 291-329 90-132 (181)
412 1oix_A RAS-related protein RAB 70.4 2.6 8.8E-05 36.2 3.0 22 90-111 30-51 (191)
413 2cbz_A Multidrug resistance-as 70.3 2.2 7.5E-05 38.7 2.7 24 90-113 32-55 (237)
414 3kkq_A RAS-related protein M-R 70.3 3.3 0.00011 34.6 3.7 20 91-110 20-39 (183)
415 1r2q_A RAS-related protein RAB 70.2 2.6 8.8E-05 34.5 2.9 40 291-330 80-122 (170)
416 3b85_A Phosphate starvation-in 70.1 2.2 7.4E-05 38.0 2.5 27 91-117 24-50 (208)
417 3l0o_A Transcription terminati 70.0 4.4 0.00015 40.1 4.8 46 73-119 159-205 (427)
418 3q85_A GTP-binding protein REM 70.0 2.6 8.9E-05 34.6 2.9 39 291-330 77-120 (169)
419 2hxs_A RAB-26, RAS-related pro 69.9 3.5 0.00012 34.1 3.7 39 291-329 81-125 (178)
420 3un1_A Probable oxidoreductase 69.8 3.6 0.00012 37.4 4.1 43 81-128 21-63 (260)
421 1r8s_A ADP-ribosylation factor 69.8 2.6 9.1E-05 34.4 2.9 39 291-330 69-112 (164)
422 4ehx_A Tetraacyldisaccharide 4 69.7 3 0.0001 39.8 3.5 27 97-125 46-72 (315)
423 1wms_A RAB-9, RAB9, RAS-relate 69.7 2.7 9.2E-05 34.8 2.9 19 92-110 10-28 (177)
424 1ek0_A Protein (GTP-binding pr 69.5 2.7 9.2E-05 34.4 2.9 38 291-329 77-118 (170)
425 3tw8_B RAS-related protein RAB 69.5 2.6 8.8E-05 35.0 2.7 19 92-110 12-30 (181)
426 3q72_A GTP-binding protein RAD 69.5 2.2 7.6E-05 35.0 2.3 39 291-330 74-117 (166)
427 3grp_A 3-oxoacyl-(acyl carrier 69.4 2.7 9.2E-05 38.5 3.1 35 87-126 26-60 (266)
428 4dsu_A GTPase KRAS, isoform 2B 69.3 3.1 0.00011 34.8 3.3 19 92-110 7-25 (189)
429 3oiy_A Reverse gyrase helicase 69.2 4.1 0.00014 39.4 4.5 33 92-124 39-71 (414)
430 1c1y_A RAS-related protein RAP 69.1 2.8 9.5E-05 34.2 2.9 38 291-329 76-118 (167)
431 1upt_A ARL1, ADP-ribosylation 69.1 3.5 0.00012 33.8 3.5 39 291-330 76-119 (171)
432 3ged_A Short-chain dehydrogena 69.1 3.4 0.00011 37.9 3.6 35 88-127 2-36 (247)
433 1z06_A RAS-related protein RAB 69.0 2.6 9E-05 35.7 2.8 38 291-329 95-137 (189)
434 1g16_A RAS-related protein SEC 68.9 2.5 8.5E-05 34.7 2.5 39 291-330 77-119 (170)
435 1nrj_B SR-beta, signal recogni 68.8 3 0.0001 36.2 3.2 20 92-111 15-34 (218)
436 1z0f_A RAB14, member RAS oncog 68.7 2.8 9.7E-05 34.6 2.9 38 291-329 89-130 (179)
437 2a9k_A RAS-related protein RAL 68.7 3.5 0.00012 34.3 3.5 19 92-110 21-39 (187)
438 4dhe_A Probable GTP-binding pr 68.7 2.1 7.2E-05 37.3 2.1 38 291-329 117-154 (223)
439 2d2e_A SUFC protein; ABC-ATPas 68.7 2.8 9.7E-05 38.2 3.1 23 90-112 30-52 (250)
440 3p19_A BFPVVD8, putative blue 68.6 4.3 0.00015 37.1 4.3 34 88-126 16-49 (266)
441 1ky3_A GTP-binding protein YPT 68.6 2.9 0.0001 34.7 2.9 19 92-110 11-29 (182)
442 2pt7_A CAG-ALFA; ATPase, prote 68.6 1.1 3.9E-05 42.8 0.3 33 91-124 173-205 (330)
443 2cxx_A Probable GTP-binding pr 68.5 2.3 8E-05 35.7 2.3 17 94-110 6-22 (190)
444 2pcj_A ABC transporter, lipopr 68.4 2.2 7.6E-05 38.3 2.2 21 91-111 32-52 (224)
445 3tif_A Uncharacterized ABC tra 68.4 2.5 8.7E-05 38.2 2.7 22 90-111 32-53 (235)
446 2onk_A Molybdate/tungstate ABC 68.3 3.1 0.0001 37.9 3.2 24 90-113 25-48 (240)
447 3nbx_X ATPase RAVA; AAA+ ATPas 68.3 2 6.8E-05 43.7 2.1 21 93-113 45-65 (500)
448 2zu0_C Probable ATP-dependent 68.2 3.1 0.00011 38.4 3.2 23 90-112 47-69 (267)
449 2gco_A H9, RHO-related GTP-bin 67.8 2.7 9.3E-05 36.2 2.6 38 291-329 98-139 (201)
450 3h7a_A Short chain dehydrogena 67.8 3.9 0.00013 37.0 3.8 35 88-127 7-41 (252)
451 3tpc_A Short chain alcohol deh 67.7 4.3 0.00015 36.6 4.1 36 88-128 7-42 (257)
452 4imr_A 3-oxoacyl-(acyl-carrier 67.7 4.9 0.00017 36.9 4.5 37 87-128 32-68 (275)
453 2fn4_A P23, RAS-related protei 67.7 3.7 0.00013 33.9 3.4 20 92-111 12-31 (181)
454 2cjw_A GTP-binding protein GEM 67.7 3 0.0001 35.8 2.9 19 92-110 9-27 (192)
455 1lw7_A Transcriptional regulat 67.7 3.1 0.00011 40.0 3.3 23 91-113 172-194 (365)
456 3cf2_A TER ATPase, transitiona 67.6 2.5 8.5E-05 45.6 2.7 22 90-111 239-260 (806)
457 3bc1_A RAS-related protein RAB 67.4 3.1 0.00011 34.9 2.9 38 291-329 95-137 (195)
458 2pze_A Cystic fibrosis transme 67.4 2.7 9.2E-05 37.8 2.6 23 91-113 36-58 (229)
459 1ko7_A HPR kinase/phosphatase; 67.3 3.1 0.00011 39.7 3.1 27 89-119 144-170 (314)
460 3pqc_A Probable GTP-binding pr 67.3 2.7 9.1E-05 35.4 2.4 39 290-329 105-143 (195)
461 1ypw_A Transitional endoplasmi 67.1 3.3 0.00011 44.6 3.6 23 90-112 239-261 (806)
462 2fh5_B SR-beta, signal recogni 67.1 3.1 0.00011 36.0 2.9 20 92-111 10-29 (214)
463 3vtz_A Glucose 1-dehydrogenase 67.0 3.5 0.00012 37.7 3.3 37 87-128 13-49 (269)
464 1ooe_A Dihydropteridine reduct 67.0 4 0.00014 36.2 3.7 37 88-129 3-39 (236)
465 3l6e_A Oxidoreductase, short-c 67.0 4 0.00014 36.5 3.6 35 88-127 3-37 (235)
466 2jlq_A Serine protease subunit 67.0 5.9 0.0002 39.2 5.2 36 89-124 19-55 (451)
467 2g6b_A RAS-related protein RAB 67.0 3.2 0.00011 34.4 2.9 19 92-110 13-31 (180)
468 1ksh_A ARF-like protein 2; sma 66.9 3.8 0.00013 34.4 3.3 39 291-330 87-130 (186)
469 3gvc_A Oxidoreductase, probabl 66.8 4 0.00014 37.6 3.7 35 88-127 29-63 (277)
470 1p6x_A Thymidine kinase; P-loo 66.8 3.1 0.00011 40.0 3.0 38 89-128 7-44 (334)
471 4fc7_A Peroxisomal 2,4-dienoyl 66.8 6.4 0.00022 36.0 5.1 35 88-127 27-61 (277)
472 1dhr_A Dihydropteridine reduct 66.8 4.4 0.00015 36.1 3.9 36 88-128 7-42 (241)
473 1ji0_A ABC transporter; ATP bi 66.7 2.8 9.5E-05 38.0 2.5 22 91-112 34-55 (240)
474 3lxw_A GTPase IMAP family memb 66.6 3.6 0.00012 37.2 3.3 19 92-110 24-42 (247)
475 1b0u_A Histidine permease; ABC 66.6 2.9 0.0001 38.5 2.7 23 90-112 33-55 (262)
476 2olj_A Amino acid ABC transpor 66.5 2.9 0.0001 38.6 2.7 24 90-113 51-74 (263)
477 2gf0_A GTP-binding protein DI- 66.5 4 0.00014 34.6 3.4 20 92-111 11-30 (199)
478 4e6p_A Probable sorbitol dehyd 66.5 4.2 0.00014 36.7 3.7 35 88-127 8-42 (259)
479 2ghi_A Transport protein; mult 66.5 2.9 0.0001 38.4 2.7 24 90-113 47-70 (260)
480 3dii_A Short-chain dehydrogena 66.4 4.1 0.00014 36.6 3.6 34 88-126 2-35 (247)
481 2pl3_A Probable ATP-dependent 66.4 6.5 0.00022 34.7 4.9 22 92-113 65-86 (236)
482 1m7b_A RND3/RHOE small GTP-bin 66.3 2.9 0.0001 35.3 2.5 20 92-111 10-29 (184)
483 2ekp_A 2-deoxy-D-gluconate 3-d 66.3 4.5 0.00015 36.0 3.8 36 88-128 2-37 (239)
484 3tzq_B Short-chain type dehydr 66.3 4.8 0.00017 36.7 4.2 36 88-128 11-46 (271)
485 2y8e_A RAB-protein 6, GH09086P 66.3 3 0.0001 34.5 2.5 38 291-329 88-129 (179)
486 3gem_A Short chain dehydrogena 66.1 3.9 0.00013 37.2 3.5 37 87-128 26-62 (260)
487 3llu_A RAS-related GTP-binding 66.0 2.9 9.8E-05 35.8 2.4 38 291-329 97-139 (196)
488 2oca_A DAR protein, ATP-depend 66.0 4.3 0.00015 40.5 4.0 33 92-124 131-164 (510)
489 3bwd_D RAC-like GTP-binding pr 66.0 3.4 0.00012 34.3 2.9 38 291-329 81-122 (182)
490 2xtp_A GTPase IMAP family memb 66.0 3.6 0.00012 37.1 3.2 20 91-110 24-43 (260)
491 2ff7_A Alpha-hemolysin translo 65.9 2.9 0.0001 38.1 2.5 23 91-113 37-59 (247)
492 2qi9_C Vitamin B12 import ATP- 65.8 3 0.0001 38.2 2.6 23 91-113 28-50 (249)
493 2bov_A RAla, RAS-related prote 65.8 3.4 0.00012 35.2 2.9 19 92-110 17-35 (206)
494 3sx2_A Putative 3-ketoacyl-(ac 65.8 4.4 0.00015 36.9 3.8 35 88-127 13-47 (278)
495 3i1j_A Oxidoreductase, short c 65.8 3.7 0.00013 36.5 3.2 35 88-127 14-48 (247)
496 3rwb_A TPLDH, pyridoxal 4-dehy 65.7 4.1 0.00014 36.6 3.5 35 88-127 6-40 (247)
497 2efe_B Small GTP-binding prote 65.7 3.6 0.00012 34.2 2.9 40 291-330 86-128 (181)
498 3gfo_A Cobalt import ATP-bindi 65.6 3.1 0.0001 38.8 2.6 22 91-112 36-57 (275)
499 2ixe_A Antigen peptide transpo 65.5 3.1 0.00011 38.6 2.7 24 90-113 46-69 (271)
500 2fwm_X 2,3-dihydro-2,3-dihydro 65.4 5.1 0.00018 35.9 4.1 36 88-128 7-42 (250)
No 1
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=100.00 E-value=1.9e-46 Score=369.07 Aligned_cols=297 Identities=32% Similarity=0.556 Sum_probs=205.6
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEe
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALE 158 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~e 158 (390)
.++.++.+..+++++++|||||||||+|+|+|..+|+.|+||++||+||+++++++||.+.. ..+..+.+.++ |++++
T Consensus 6 ~l~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~l~~~l~~~~~-~~~~~v~~~~~-L~~~~ 83 (334)
T 3iqw_A 6 TLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFG-KEARLVEGFDN-LYAME 83 (334)
T ss_dssp SSHHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHHHTSCCC-SSCEECTTCSS-EEEEE
T ss_pred cHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCChhHHhccccC-CCceeecCCCC-ceeee
Confidence 45567777778999999999999999999999999999999999999999999999998764 34566665555 99999
Q ss_pred cChHHHHHHHHhhhhhcCC---Ccchhhhcc-----cc------hhhHHHHhhhhhccc-ccCCCCCChhHHHHhhccce
Q 016417 159 INPEKAREEFRNVTQKDGG---TGVKDFMDG-----MG------LGMLVEQLGELKLGE-LLDTPPPGLDEAIAISKGHT 223 (390)
Q Consensus 159 id~~~~~~~~~~~~~~~~~---~~~~~~l~~-----~~------~~~~~e~L~~~~~~~-lid~~pPG~de~~~l~~g~t 223 (390)
+|++...++|......... ..+ .++.. .+ +..+.+.+....++. ++|+ ||. |||
T Consensus 84 id~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDt-pPt---------g~t 152 (334)
T 3iqw_A 84 IDPNGSMQDLLAGQTGDGDAGMGGV-GVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDT-APT---------GHT 152 (334)
T ss_dssp CCC---------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEEC-CCH---------HHH
T ss_pred cCHHHHHHHHHHHhhcccccccccc-hhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeC-CCC---------HHH
Confidence 9999888777653221100 000 00000 00 011111111112222 2333 222 899
Q ss_pred eccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC
Q 016417 224 LRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQ---EQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPT 300 (390)
Q Consensus 224 LrlL~lp~~l~~~l~~ll~l~~~~~~~~~~~~~~~g~---~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe 300 (390)
||+|++|+.+.+|+++++++++++..+.+.+...+|. ....+++.+.++.+++++++++++|+||+.|++++|++|+
T Consensus 153 LrlL~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe 232 (334)
T 3iqw_A 153 LRFLQFPTVLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPE 232 (334)
T ss_dssp HHHHTHHHHC-----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCC
Confidence 9999999999999999999999888877777776664 2456778899999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCCcceEEEcCcc-CCCCCchHHHHHHHHHHHHHHHhhhhcCccCC-CceEEecCCCCCCCCH
Q 016417 301 VMAVSESSRLSESLKKENVPVKRLIVNQII-PPSASDCKFCAMKRKDQMRALEMIKSDSELSS-LMLIEAPLVDVEIRGV 378 (390)
Q Consensus 301 ~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~-p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~-l~i~~vP~~~~ev~G~ 378 (390)
.+++.|++|+++.|+++|+++.|+|+||++ |+....|++|+.|.+.|+++|++|++ .|.+ ++++.+|+++.||+|+
T Consensus 233 ~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~--~~~~~~~~~~~pl~~~e~~G~ 310 (334)
T 3iqw_A 233 FLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEE--LYDEEFNVVKMPLLVEEVRGK 310 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHH--HHTTTSEEEEEECCSSCCCHH
T ss_pred ccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHH--hccCCCCEEEecCCCCCCCCH
Confidence 999999999999999999999999999999 55556899999999999999999998 5677 9999999999999999
Q ss_pred HHHHHHHHHhhC
Q 016417 379 PALRFMGDIIWK 390 (390)
Q Consensus 379 ~~L~~l~~~~~~ 390 (390)
++|+.+++.||+
T Consensus 311 ~~L~~~~~~l~~ 322 (334)
T 3iqw_A 311 ERLEKFSEMLIK 322 (334)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC
Confidence 999999999985
No 2
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=100.00 E-value=7.1e-45 Score=359.67 Aligned_cols=294 Identities=30% Similarity=0.504 Sum_probs=188.0
Q ss_pred cchhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCee
Q 016417 78 SGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLF 155 (390)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a--~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~ 155 (390)
+.++.++....+++++++|||||||||+|+|+|..+| +.|+||++||+||+++++++||.+.+ ..+..+.+.++ |+
T Consensus 7 ~~L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~~~~~~-~~~~~v~~~~~-L~ 84 (348)
T 3io3_A 7 PTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFG-KDARKVEGLPN-LS 84 (348)
T ss_dssp SSSHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHHTSCCC-SSCEEETTEEE-EE
T ss_pred hhHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHhccccC-CCceeccCCCC-ce
Confidence 3567778888889999999999999999999999999 89999999999999999999998864 45666655554 99
Q ss_pred EEecChHHHHHHHHhhhhh---cCCCcchhhh----c-------ccchhhHHHHhhhh------------hccc-ccCCC
Q 016417 156 ALEINPEKAREEFRNVTQK---DGGTGVKDFM----D-------GMGLGMLVEQLGEL------------KLGE-LLDTP 208 (390)
Q Consensus 156 a~eid~~~~~~~~~~~~~~---~~~~~~~~~l----~-------~~~~~~~~e~L~~~------------~~~~-lid~~ 208 (390)
++++|++...++|+..... .....+..+. . ...+..+.+.+... .++. ++|+
T Consensus 85 ~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDt- 163 (348)
T 3io3_A 85 CMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDT- 163 (348)
T ss_dssp EEECCC-----------------------------------------------------------------CCEEEEEC-
T ss_pred EEeeCHHHHHHHHHHHHHhhcccccccHhHHhHHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcC-
Confidence 9999999988877664221 0000011111 0 01122223333322 3333 4555
Q ss_pred CCChhHHHHhhccceeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCC
Q 016417 209 PPGLDEAIAISKGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDT 288 (390)
Q Consensus 209 pPG~de~~~l~~g~tLrlL~lp~~l~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~ 288 (390)
||. |||||+|++|+.+.+|+++++++++++..+. .+...+| .+++.+.++.++++++++.++|+||
T Consensus 164 pPt---------g~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~-~~~~~~~----~~~~~~~l~~~~~~~~~~~~~L~dp 229 (348)
T 3io3_A 164 APT---------GHTLRFLQLPSTLEKLLSKFKDLSGKLGPML-SMMGGGQ----QQDIFEKLNEVQKNVSEVNEQFTNP 229 (348)
T ss_dssp SSH---------HHHHHHTC--------------------------------------------------CHHHHHHTCT
T ss_pred CCc---------hHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH-HhcccCc----hHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 443 8999999999999999999998887766554 3333333 5678889999999999999999999
Q ss_pred CCceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCCC-C-CchHHHHHHHHHHHHHHHhhhhcCccCCCceE
Q 016417 289 DSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPS-A-SDCKFCAMKRKDQMRALEMIKSDSELSSLMLI 366 (390)
Q Consensus 289 ~~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~~-~-~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~ 366 (390)
+.|++++|++|+.+++.+++|+++.|+++|+++.|+|+||+.++. . ..|++|+.+.+.|+++|++|++ .|.++|++
T Consensus 230 ~~t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~--~~~~~~~~ 307 (348)
T 3io3_A 230 ELTTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGE--LYEDYHLV 307 (348)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHH--HTTTSEEE
T ss_pred CceEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHH--HccCCCEE
Confidence 999999999999999999999999999999999999999999976 3 3799999999999999999998 56899999
Q ss_pred EecCCCCCCCCHHHHHHHHHHhhC
Q 016417 367 EAPLVDVEIRGVPALRFMGDIIWK 390 (390)
Q Consensus 367 ~vP~~~~ev~G~~~L~~l~~~~~~ 390 (390)
.+|+++.||+|+++|+.|++.||+
T Consensus 308 ~~pl~~~e~~G~~~L~~~~~~l~~ 331 (348)
T 3io3_A 308 KMPLLGCEIRGVENLKKFSKFLLK 331 (348)
T ss_dssp EEECCSSCCCSHHHHHHHHHHHHS
T ss_pred EecCCCCCCCCHHHHHHHHHHHcC
Confidence 999999999999999999999984
No 3
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=100.00 E-value=4.1e-42 Score=340.21 Aligned_cols=290 Identities=33% Similarity=0.636 Sum_probs=234.0
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEecChHHHH
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAR 165 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid~~~~~ 165 (390)
...++|+|++|||||||||+|+|+|..+|+.|+||++||+|++++++++||.+.. ..+..+.|.++ +++.++|++...
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~-~~~~~v~g~~~-l~~~~id~~~~~ 100 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFG-HEPTKVKGYDN-LYVVEIDPQKAM 100 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCHHHHHHCSCCC-SSCEECTTCSS-EEEEECCHHHHH
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCCCCC-cCccccccccc-eeeeccCHHHHH
Confidence 4678999999999999999999999999999999999999999999999998764 35566655555 999999999988
Q ss_pred HHHHhhhhhcCCC------cchhhh----------cccchhhHHHHhhhhhccc-ccCCCCCChhHHHHhhccceecccc
Q 016417 166 EEFRNVTQKDGGT------GVKDFM----------DGMGLGMLVEQLGELKLGE-LLDTPPPGLDEAIAISKGHTLRLLS 228 (390)
Q Consensus 166 ~~~~~~~~~~~~~------~~~~~l----------~~~~~~~~~e~L~~~~~~~-lid~~pPG~de~~~l~~g~tLrlL~ 228 (390)
++|+......... .+...+ +...+..+.+.+....++. ++|+ ||+ ||++|+|+
T Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDt-pPt---------~~tlrlL~ 170 (349)
T 3ug7_A 101 EEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDT-APT---------GHTLRFLG 170 (349)
T ss_dssp HHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECS-CCC---------TTGGGGGG
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECC-CCC---------hHHHHHHh
Confidence 8876543221110 000000 0000111222222223333 3444 444 89999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cc--cchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcch
Q 016417 229 LPDFLDASIGKILKLREKIASATSAIKSVFG---QE--QNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 303 (390)
Q Consensus 229 lp~~l~~~l~~ll~l~~~~~~~~~~~~~~~g---~~--~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s 303 (390)
+|+.+.+|+++++++++++..+.+.+..+++ .+ .+.+++.+.++.+++++++++++|+||+.|++++|++|+.++
T Consensus 171 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~ 250 (349)
T 3ug7_A 171 MPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMS 250 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccH
Confidence 9999999999999999988887777665532 21 245788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcceEEEcCccCCCCCchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCCCHHHHHH
Q 016417 304 VSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRF 383 (390)
Q Consensus 304 ~~ea~r~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~G~~~L~~ 383 (390)
+.|++|+++.|+++|+++.|+|+||+.+... .|++|..+.+.|.++++++.+ .|...++..+|+.+.||+|+++|+.
T Consensus 251 ~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~-~~~~~~~~~~~~~~~l~~i~~--~~~~~~l~~iPl~~~e~~g~~~L~~ 327 (349)
T 3ug7_A 251 ILESERAMKALQKYGIPIDAVIVNQLIPEDV-QCDFCRARRELQLKRLEMIKE--KFGDKVIAYVPLLRTEAKGIETLKQ 327 (349)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEECCSCC-CSHHHHHHHHHHHHHHHHHHH--HSTTSEEEEEECCSSCSCSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCeeEEEEcCCccccC-CCchHHHHHHHHHHHHHHHHH--HcCCCcEEEecCCCCCCCCHHHHHH
Confidence 9999999999999999999999999998753 599999999999999999988 6789999999999999999999999
Q ss_pred HHHHhhC
Q 016417 384 MGDIIWK 390 (390)
Q Consensus 384 l~~~~~~ 390 (390)
+++.||.
T Consensus 328 ~~~~l~~ 334 (349)
T 3ug7_A 328 IAKILYG 334 (349)
T ss_dssp HHHHHC-
T ss_pred HHHHHcC
Confidence 9999984
No 4
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3e-42 Score=337.78 Aligned_cols=285 Identities=35% Similarity=0.638 Sum_probs=226.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEecChHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEF 168 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid~~~~~~~~ 168 (390)
++|+|++|||||||||+|+|+|..+|++|+||++||+|++++++++||.+... .+..+. + +|++.++|++...+++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~-~~~~v~--~-~l~~~~~d~~~~~~~~ 89 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGH-TPTKIT--E-NLYAVEIDPEVAMEEY 89 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTSCCCS-SCEEEE--T-TEEEEECCHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHhCCcCCC-CCccCC--C-CceeeccChHHHHHHH
Confidence 69999999999999999999999999999999999999999999999987643 344442 3 4999999999998887
Q ss_pred HhhhhhcCC----Ccchhh---hc----------ccchhhHHHHhhhhhccc-ccCCCCCChhHHHHhhccceeccccCc
Q 016417 169 RNVTQKDGG----TGVKDF---MD----------GMGLGMLVEQLGELKLGE-LLDTPPPGLDEAIAISKGHTLRLLSLP 230 (390)
Q Consensus 169 ~~~~~~~~~----~~~~~~---l~----------~~~~~~~~e~L~~~~~~~-lid~~pPG~de~~~l~~g~tLrlL~lp 230 (390)
+........ .++..+ ++ ...+..+.+.+....++. ++|+ ||+ ||++++|++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDt-pPt---------~~~l~lL~~p 159 (324)
T 3zq6_A 90 QAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDT-APT---------GHTLRLLSFP 159 (324)
T ss_dssp HHHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEEC-CCH---------HHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECC-CCC---------HHHHHHHHhH
Confidence 764322110 000000 00 000011111111112222 2333 332 8999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHH
Q 016417 231 DFLDASIGKILKLREKIASATSAIKSVF---GQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSES 307 (390)
Q Consensus 231 ~~l~~~l~~ll~l~~~~~~~~~~~~~~~---g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea 307 (390)
+.+.+|+++++++++++..+.+.++.++ |.....+++.+.++++++++++++++|+||+.|++++|++|+.+++.++
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~ 239 (324)
T 3zq6_A 160 EIMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYES 239 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHH
Confidence 9999999999999998887766665543 2222347888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcceEEEcCccCCCCCchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCCCHHHHHHHHHH
Q 016417 308 SRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDI 387 (390)
Q Consensus 308 ~r~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~G~~~L~~l~~~ 387 (390)
+|+++.|+++|+++.|+|+||+.+... .|++|+.+.+.|.++++++.+ .|...++..+|+++.||+|+++|+.+++.
T Consensus 240 ~~~~~~l~~~gi~v~gvV~N~~~~~~~-~~~~~~~~~~~~~~~l~~i~~--~~~~~~~~~iPl~~~e~~g~~~L~~~~~~ 316 (324)
T 3zq6_A 240 ERAMKALEKYSIHADGVIVNQVLPEES-DCEFCNARRKLQQERLKQIRE--KFSDKVVAEVPLLKKEAKGIETLEKIAEQ 316 (324)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCSCC-CSHHHHHHHHHHHHHHHHHHH--HTTTSEEEEEECCSSCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCccEEEEcCCccccC-CChHHHHHHHHHHHHHHHHHH--HcCCCcEEEecCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999998753 699999999999999999998 67899999999999999999999999999
Q ss_pred hhC
Q 016417 388 IWK 390 (390)
Q Consensus 388 ~~~ 390 (390)
||+
T Consensus 317 l~~ 319 (324)
T 3zq6_A 317 LYG 319 (324)
T ss_dssp HHC
T ss_pred HhC
Confidence 985
No 5
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-41 Score=329.15 Aligned_cols=296 Identities=29% Similarity=0.550 Sum_probs=230.3
Q ss_pred hhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEec
Q 016417 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEI 159 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~ei 159 (390)
+..++....++++|++|||||||||+|+|+|..+|++|+||+++|+|++++++++||.+.+ ..+..+.+..+ +++.++
T Consensus 10 l~~~~~~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~~~l~~~l~~~~~-~~~~~~~g~~~-l~~~~~ 87 (329)
T 2woo_A 10 LENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFG-KDARKVPGFDN-LSAMEI 87 (329)
T ss_dssp THHHHHCTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTCHHHHHHSSCCC-SSCEECTTCSS-EEEEEC
T ss_pred HHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCcCHHHHhCCcCC-CCCeeccCCCC-eeEEec
Confidence 3444555678899999999999999999999999999999999999999999999998753 23444555554 999999
Q ss_pred ChHHHHHHHHhhhhhc-----CCCcchhhh-------cccchhhHHHHhhhhhccc-ccCCCCCChhHHHHhhccceecc
Q 016417 160 NPEKAREEFRNVTQKD-----GGTGVKDFM-------DGMGLGMLVEQLGELKLGE-LLDTPPPGLDEAIAISKGHTLRL 226 (390)
Q Consensus 160 d~~~~~~~~~~~~~~~-----~~~~~~~~l-------~~~~~~~~~e~L~~~~~~~-lid~~pPG~de~~~l~~g~tLrl 226 (390)
+++...++++...... .+..+.++. +...+..+.+.+.+-.++. ++|+ ||. ||+|++
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDt-pPt---------g~~l~l 157 (329)
T 2woo_A 88 DPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDT-APT---------GHTLRF 157 (329)
T ss_dssp CHHHHHHHHHHTC--------CCHHHHHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEEC-CSS---------SCTTTG
T ss_pred CHHHHHHHHHHHHhhhhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECC-CCc---------hHHHHH
Confidence 9988877765421110 000000000 0011122333333223343 4555 442 799999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHH
Q 016417 227 LSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSE 306 (390)
Q Consensus 227 L~lp~~l~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~e 306 (390)
|.+|+.+++|++++++++.++..+.+.+..++|.....+++...++.+++.++++++.++|++.|++++|++|+.+++.|
T Consensus 158 L~~p~~~~~~l~~l~~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~e 237 (329)
T 2woo_A 158 LNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYE 237 (329)
T ss_dssp GGHHHHHHHHHHHHHTSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHH
Confidence 99999999999999887776655555555555543334567788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcceEEEcCcc-CCCCCchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCCCHHHHHHHH
Q 016417 307 SSRLSESLKKENVPVKRLIVNQII-PPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMG 385 (390)
Q Consensus 307 a~r~~~~L~~~gi~v~gvVvN~v~-p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~G~~~L~~l~ 385 (390)
++|+++.|+++|+++.|+|+||+. |. ...|++|..+.+.|+++++++.+ .|.++|+..+|+++.||+|+++|+.|+
T Consensus 238 a~~~~~~L~~~gi~v~gvVvN~~~~p~-~~~~~~~~~~~~~q~~~l~~i~~--~~~~~~~~~vP~~~~e~~g~~~L~~l~ 314 (329)
T 2woo_A 238 TERMIQELTSYEIDTHNIVVNQLLLDP-NTTCPQCMARRKMQQKYLAQIEE--LYEDFHVVKVPQVPAEVRGTEALKSFS 314 (329)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEECCCS-SCCCHHHHHHHHHHHHHHHHHHH--HTTTSEEEEEECCSSCCCSTTHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEeCCcCcc-cccCHHHHHHHHHHHHHHHHHHH--hcCCCCEEEecCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999 66 45799999999999999999988 578999999999999999999999999
Q ss_pred HHhhC
Q 016417 386 DIIWK 390 (390)
Q Consensus 386 ~~~~~ 390 (390)
+.+|+
T Consensus 315 ~~l~~ 319 (329)
T 2woo_A 315 EMLVK 319 (329)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 99984
No 6
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=100.00 E-value=3.9e-39 Score=319.51 Aligned_cols=293 Identities=29% Similarity=0.515 Sum_probs=220.3
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeE
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFA 156 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a--~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a 156 (390)
.++.++....++|+|++|||||||||+|+|+|..+| +.|+||++||+|++++++++||.+.. ..+..+.|..+ |++
T Consensus 8 ~l~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~~~l~~~lg~~~~-~~~~~v~gl~~-l~~ 85 (354)
T 2woj_A 8 NLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFG-KDARKVTGMNN-LSC 85 (354)
T ss_dssp SCHHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCCHHHHHTSCCC-SSCEECTTCSS-EEE
T ss_pred cHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHhCCCCC-CCceeecCCCc-eEE
Confidence 566677777789999999999999999999999999 99999999999999999999998764 35666666555 999
Q ss_pred EecChHHHHHHHHhhhhhc---------------C--CCcchhhhc-c------cchhhHHHHhhhh------hccc-cc
Q 016417 157 LEINPEKAREEFRNVTQKD---------------G--GTGVKDFMD-G------MGLGMLVEQLGEL------KLGE-LL 205 (390)
Q Consensus 157 ~eid~~~~~~~~~~~~~~~---------------~--~~~~~~~l~-~------~~~~~~~e~L~~~------~~~~-li 205 (390)
.++|++...++|+...... . +....++.. . ..+..+.+.+... .++. ++
T Consensus 86 ~~id~~~~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIi 165 (354)
T 2woj_A 86 MEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIF 165 (354)
T ss_dssp EECCHHHHHHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEE
T ss_pred EecCHHHHHHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEE
Confidence 9999998887776532110 0 011112111 0 1122334444432 3444 45
Q ss_pred CCCCCChhHHHHhhccceeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHh
Q 016417 206 DTPPPGLDEAIAISKGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELF 285 (390)
Q Consensus 206 d~~pPG~de~~~l~~g~tLrlL~lp~~l~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L 285 (390)
|+ ||- |||||+|.+|+.+++|+++++++..++..+...+..+ + .+++.+.++.++++++++.+.|
T Consensus 166 Dt-pPt---------G~tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~~L 230 (354)
T 2woj_A 166 DT-APT---------GHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGA-G----NVDISGKLNELKANVETIRQQF 230 (354)
T ss_dssp EC-CCH---------HHHHHHHTHHHHHHHHHHCC--------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCc---------hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C----hHHHHHHHHHHHHHHHHHHHHh
Confidence 65 442 6999999999999999999988877765544433322 1 2357889999999999999999
Q ss_pred cCCCCceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCcc-CCCCC--chHHHHHHHHHHHHHHHhhhhcCccCC
Q 016417 286 RDTDSTEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII-PPSAS--DCKFCAMKRKDQMRALEMIKSDSELSS 362 (390)
Q Consensus 286 ~d~~~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~-p~~~~--~~~~~~~~~~~q~~~l~~i~~d~~~~~ 362 (390)
+||..|.+++|++|+.+++.|++|+++.|+++|+++.++|+||+. |.... .|++|..+.+.|+++|+++.. .+.+
T Consensus 231 ~d~~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~~~~~~~~~~~~~~~~~~~~q~~~l~~l~~--~~~~ 308 (354)
T 2woj_A 231 TDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQIDE--LYED 308 (354)
T ss_dssp TCTTTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCC------CHHHHHHHHHHHHHHHHHHH--HTTT
T ss_pred cCCCCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCCCcccccccccHHHHHHHHHHHHHHHHHHH--hcCC
Confidence 999999999999999999999999999999999999999999999 66542 589999999999999999987 5678
Q ss_pred CceEEecCCCCCCCCHHHHHHHHHHhhC
Q 016417 363 LMLIEAPLVDVEIRGVPALRFMGDIIWK 390 (390)
Q Consensus 363 l~i~~vP~~~~ev~G~~~L~~l~~~~~~ 390 (390)
.++.++|++..++.|.++|+.+++.|++
T Consensus 309 ~~v~~~P~~~~~~~g~~~l~~la~~l~~ 336 (354)
T 2woj_A 309 FHVVKMPLCAGEIRGLNNLTKFSQFLNK 336 (354)
T ss_dssp SEEEEEECCSSCCCHHHHHHHHHHHHHT
T ss_pred CCEEEeecCCCCCccHHHHHHHHHHHhc
Confidence 9999999999999999999999999874
No 7
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=100.00 E-value=5.9e-36 Score=298.06 Aligned_cols=259 Identities=17% Similarity=0.166 Sum_probs=181.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEecChHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEF 168 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid~~~~~~~~ 168 (390)
+++++++|||||||||+|+++|..+|++|+||++||+ |+++++++||.+.. ..++.+. + +|+++++|++...++|
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~~~~~~-~~~~~v~--~-~L~~~eid~~~~~~~~ 76 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLLEQTLT-PDPQQIA--P-NLEVVQFQSSVLLERN 76 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHHTSCCC-SSCEEEE--T-TEEEEECCHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhhCCCCC-CCccccc--c-cccccccCHHHHHHHH
Confidence 4688999999999999999999999999999999999 99999999998764 3455553 3 4999999999998887
Q ss_pred HhhhhhcC-----CCcc-----hhhhcccchhh------HHHHhhhhhccc-ccCCCCCChhHHHHhhccceeccccCch
Q 016417 169 RNVTQKDG-----GTGV-----KDFMDGMGLGM------LVEQLGELKLGE-LLDTPPPGLDEAIAISKGHTLRLLSLPD 231 (390)
Q Consensus 169 ~~~~~~~~-----~~~~-----~~~l~~~~~~~------~~e~L~~~~~~~-lid~~pPG~de~~~l~~g~tLrlL~lp~ 231 (390)
+....... ...+ .+.....|+.. +.+.+....++. ++|++ |. |||||+|++|+
T Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtp-Pt---------g~tLrlL~lP~ 146 (374)
T 3igf_A 77 WEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGT-GD---------AFTLRMLGLPE 146 (374)
T ss_dssp HHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECC-CS---------HHHHHHHTHHH
T ss_pred HHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCC-CC---------hHHhhhhhhhH
Confidence 76432100 0000 00000011110 111111112222 33432 22 89999999999
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHH-HHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcc
Q 016417 232 FLDASIGKILKLREKI--------ASATSAI-KSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVM 302 (390)
Q Consensus 232 ~l~~~l~~ll~l~~~~--------~~~~~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~ 302 (390)
.+.+|++++++++++. .+....+ ...+|.....+++.+.++.+++++++++++|+||+.|++++|++||.+
T Consensus 147 ~l~~~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~ 226 (374)
T 3igf_A 147 SLSWYVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPL 226 (374)
T ss_dssp HHHHHHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHH
T ss_pred HHHHHHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc
Confidence 9999999988877763 2222222 222344445677888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCcceEEEcCccCCCCCchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCCCHHHHH
Q 016417 303 AVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALR 382 (390)
Q Consensus 303 s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~G~~~L~ 382 (390)
++.|++|+++.|+++|+++.|+|+|| |+ ++++|.+ .|.++|+..+|+++.| +|+
T Consensus 227 sl~ea~r~~~~L~~~gi~v~gvVvN~--~~-----------------~l~~i~~--~F~~~~v~~vpl~~~e-----~l~ 280 (374)
T 3igf_A 227 EVVSVRYLWGSAQQIGLTIGGVIQVS--SQ-----------------TEGDLSA--EFTPLSVTVVPDVTKG-----DWQ 280 (374)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECC--CS-----------------CCCCCGG--GSTTSCEEECCCCBTT-----BCH
T ss_pred HHHHHHHHHHHHHHcCCCccEEEEcC--HH-----------------HHHHHHH--hcCCCceEECCCCChh-----HHH
Confidence 99999999999999999999999999 32 4677876 6789999999999999 677
Q ss_pred HHHHHh
Q 016417 383 FMGDII 388 (390)
Q Consensus 383 ~l~~~~ 388 (390)
++++.|
T Consensus 281 ~l~~~l 286 (374)
T 3igf_A 281 PLIDAL 286 (374)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 777654
No 8
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.97 E-value=1.8e-31 Score=280.63 Aligned_cols=269 Identities=28% Similarity=0.396 Sum_probs=199.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCeeEEecChHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREE 167 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L~a~eid~~~~~~~ 167 (390)
.+++++++|||||||||+|+|+|..+|++|+||++||+|++++++++||.+.. ..+..+.+.++ |+++++|++...++
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~~~l~~~l~~~~~-~~~~~v~~~~~-l~~~~~d~~~~~~~ 84 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIG-NTIQAIASVPG-LSALEIDPQAAAQQ 84 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCCC-SSCEECTTSTT-EEEEECCHHHHHHH
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCCcCHHHHhCCccc-CCCceeccchh-hhhccCCHHHHHHH
Confidence 45688999999999999999999999999999999999999999999998764 34555555555 99999999988777
Q ss_pred HHhhhhhc-CCCcchh-------hhcc------cchhhHHHHhh----hhhccc-ccCCCCCChhHHHHhhccceecccc
Q 016417 168 FRNVTQKD-GGTGVKD-------FMDG------MGLGMLVEQLG----ELKLGE-LLDTPPPGLDEAIAISKGHTLRLLS 228 (390)
Q Consensus 168 ~~~~~~~~-~~~~~~~-------~l~~------~~~~~~~e~L~----~~~~~~-lid~~pPG~de~~~l~~g~tLrlL~ 228 (390)
|+...... .+..... .+.. ..+..+.+.+. ...++. ++|+ ||+ |+++|+|.
T Consensus 85 ~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt-~P~---------~~~lrll~ 154 (589)
T 1ihu_A 85 YRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDT-APT---------GHTIRLLQ 154 (589)
T ss_dssp HHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESS-CCC---------HHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECC-CCc---------hhHHHHHH
Confidence 66532111 0000000 0000 01111222222 112343 4555 554 68899999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHH
Q 016417 229 LPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESS 308 (390)
Q Consensus 229 lp~~l~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~ 308 (390)
+|+.+.+|+++... . ...++. ...+...++++.++.+.+.|+..|.+++|++|+.+++.+++
T Consensus 155 lP~~~~~~l~~~~~-------~----~~~l~~-------~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~ 216 (589)
T 1ihu_A 155 LPGAWSSFIDSNPE-------G----ASCLGP-------MAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVA 216 (589)
T ss_dssp CGGGGTCCC-----------------CCCCGG-------GGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHH
T ss_pred hHHHHHHHHHHhhc-------c----ccccch-------hhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHH
Confidence 99988877754311 0 001110 11123345667788888999999999999999999999999
Q ss_pred HHHHHHHhCCCCcceEEEcCccCCCC-CchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCCCHHHHHHHHHH
Q 016417 309 RLSESLKKENVPVKRLIVNQIIPPSA-SDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDI 387 (390)
Q Consensus 309 r~~~~L~~~gi~v~gvVvN~v~p~~~-~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~G~~~L~~l~~~ 387 (390)
|+++.|+++|+++.|+|+|++.+... ..|++|..+.+.|+++++++++ .|.++++..+|+++.|++|+++|+.+++.
T Consensus 217 ~~~~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~vPl~~~e~~g~~~l~~~~~~ 294 (589)
T 1ihu_A 217 RTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPA--DLAGLPTDTLFLQPVNMVGVSALSRLLST 294 (589)
T ss_dssp HHHHHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCH--HHHTSCEEEEECCSSCCCSHHHHHHTTCS
T ss_pred HHHHHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHH--hccCCCEEEecCCCCCCCCHHHHHHHHhh
Confidence 99999999999999999999998764 4689999999999999999987 67899999999999999999999998754
Q ss_pred h
Q 016417 388 I 388 (390)
Q Consensus 388 ~ 388 (390)
+
T Consensus 295 ~ 295 (589)
T 1ihu_A 295 Q 295 (589)
T ss_dssp C
T ss_pred h
Confidence 3
No 9
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.96 E-value=4e-28 Score=255.20 Aligned_cols=253 Identities=24% Similarity=0.396 Sum_probs=170.3
Q ss_pred cchhhhhh---cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccCCCccccccCCCCCe
Q 016417 78 SGFDEMVA---GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFPL 154 (390)
Q Consensus 78 ~~~~~~~~---~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~~~~~~~v~~~~~~L 154 (390)
+.+++++. ...+++++++|||||||||+|+|+|..+++.|++|+++|+||+++++.+|+... + ++
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~l~~~l~~~~-----------~-~l 380 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSL-----------N-NL 380 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC----------------------C-CE
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcccHhHHhcccC-----------C-Cc
Confidence 35554444 356789999999999999999999999999999999999999999999998532 1 37
Q ss_pred eEEecChHHHHHHHHhhhhhcCCCcch--------hhhcccchh--hHHHHhhhh----hccc-ccCCCCCChhHHHHhh
Q 016417 155 FALEINPEKAREEFRNVTQKDGGTGVK--------DFMDGMGLG--MLVEQLGEL----KLGE-LLDTPPPGLDEAIAIS 219 (390)
Q Consensus 155 ~a~eid~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~--~~~e~L~~~----~~~~-lid~~pPG~de~~~l~ 219 (390)
++.++++....++++..........+. +.+...+.. ...+.+... .++. ++|+ +|+
T Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~-~p~-------- 451 (589)
T 1ihu_A 381 QVSRIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDT-APT-------- 451 (589)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESC-CCC--------
T ss_pred eeeecchHHHHHHHHHHHHHhhhccCChhhHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcC-CCC--------
Confidence 888888876655554432211000000 001110100 012222221 2343 4554 666
Q ss_pred ccceeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Q 016417 220 KGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIP 299 (390)
Q Consensus 220 ~g~tLrlL~lp~~l~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~P 299 (390)
+|++++|.+|+.+..++.+.+ +. .. .+.++...+.|+..+.+++|++|
T Consensus 452 -~~tl~ll~~p~~~~~~~~~~~-----------------~~-------------~~-~~~~~~~~l~d~~~~~vvlV~~p 499 (589)
T 1ihu_A 452 -GHTLLLLDATGAYHREIAKKM-----------------GE-------------KG-HFTTPMMLLQDPERTKVLLVTLP 499 (589)
T ss_dssp -HHHHHHHHHC-------------------------------------------------CCHHHHHCTTTEEEEEEECS
T ss_pred -ccHHHHHHhHHHHHHHHHHhc-----------------cc-------------ch-HHHHHHHHhcCCCCCEEEEEeCC
Confidence 688999999988754432111 00 00 12233345789989999999999
Q ss_pred CcchHHHHHHHHHHHHhCCCCcceEEEcCccCCCCCchHHHHHHHHHHHHHHHhhhhcCccCCCceEEecCCCCCCCCHH
Q 016417 300 TVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVP 379 (390)
Q Consensus 300 e~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~vP~~~~ev~G~~ 379 (390)
+.+++.++.|+++.|+++|+++.++|+|++.+.....|++|..+.+.|.+++++|.+ .| +.++..+|+++.||+|++
T Consensus 500 ~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~-~~~v~~iP~~~~e~~g~~ 576 (589)
T 1ihu_A 500 ETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKR--QH-ASRVALVPVLASEPTGID 576 (589)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHT--TT-CSSEEEEECCSSCCCSHH
T ss_pred CccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHH--hc-CCcEEEccCCCCCCCCHH
Confidence 999999999999999999999999999999998777899999999999999999987 34 468999999999999999
Q ss_pred HHHHHHH
Q 016417 380 ALRFMGD 386 (390)
Q Consensus 380 ~L~~l~~ 386 (390)
+|+.++-
T Consensus 577 ~l~~~~~ 583 (589)
T 1ihu_A 577 KLKQLAG 583 (589)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9998863
No 10
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.72 E-value=8e-17 Score=154.77 Aligned_cols=167 Identities=17% Similarity=0.179 Sum_probs=108.7
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcccCCCccccccC-----------CCCC
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQLVPVEG-----------PDFP 153 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~~~~~~~~~v~~-----------~~~~ 153 (390)
...++|+|+|+|||+||||+|+|||..+|+.|+||+|||+|++ +++..+|+.+...+....+.+ ...+
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 169 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAK 169 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCC
Confidence 3568999999999999999999999999999999999999998 589999987543211000000 0011
Q ss_pred eeEEecChHHHHHHHHhhhhhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhccceeccccCchHH
Q 016417 154 LFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLLSLPDFL 233 (390)
Q Consensus 154 L~a~eid~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~g~tLrlL~lp~~l 233 (390)
|+.+...+ ......+++....+..+.+.+...+...+||+ ||+. ...+..
T Consensus 170 l~vl~~g~--------------~~~~~~ell~~~~l~~ll~~l~~~yD~VIIDt-pp~~---------------~~~da~ 219 (286)
T 3la6_A 170 FDLIPRGQ--------------VPPNPSELLMSERFAELVNWASKNYDLVLIDT-PPIL---------------AVTDAA 219 (286)
T ss_dssp EEEECCCS--------------CCSCHHHHHTSHHHHHHHHHHHHHCSEEEEEC-CCTT---------------TCTHHH
T ss_pred EEEEeCCC--------------CCCCHHHHhchHHHHHHHHHHHhCCCEEEEcC-CCCc---------------chHHHH
Confidence 33332211 01122233333333334444443333345555 4432 111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHHHH
Q 016417 234 DASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSES 313 (390)
Q Consensus 234 ~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~ 313 (390)
.+. ...+.+++|+.++..+..++.++++.
T Consensus 220 --------------------------------------------------~l~-~~aD~vllVv~~~~~~~~~~~~~~~~ 248 (286)
T 3la6_A 220 --------------------------------------------------IVG-RHVGTTLMVARYAVNTLKEVETSLSR 248 (286)
T ss_dssp --------------------------------------------------HHT-TTCSEEEEEEETTTSBHHHHHHHHHH
T ss_pred --------------------------------------------------HHH-HHCCeEEEEEeCCCCcHHHHHHHHHH
Confidence 011 12467999999999999999999999
Q ss_pred HHhCCCCcceEEEcCccCCC
Q 016417 314 LKKENVPVKRLIVNQIIPPS 333 (390)
Q Consensus 314 L~~~gi~v~gvVvN~v~p~~ 333 (390)
|++.|+++.|+|+|++-+..
T Consensus 249 l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 249 FEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HHHTTCCCCEEEEEEECCCC
T ss_pred HHhCCCCEEEEEEcCccccc
Confidence 99999999999999997654
No 11
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.70 E-value=1.8e-17 Score=149.52 Aligned_cols=49 Identities=33% Similarity=0.459 Sum_probs=46.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~ 137 (390)
++|.|+|+||||||||+|++||..++++|++|+++|+||+.++..+++.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~ 50 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKA 50 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhc
Confidence 6799999999999999999999999999999999999999999999974
No 12
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.68 E-value=2.3e-16 Score=148.86 Aligned_cols=56 Identities=29% Similarity=0.450 Sum_probs=50.6
Q ss_pred hhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC-CCchHhhcc
Q 016417 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH-SLSDSFAQD 138 (390)
Q Consensus 83 ~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~-~l~~~~g~~ 138 (390)
.+.+..++|+|+|+||||||||+|+|||..|+++|+||++||+|++. ++..+||.+
T Consensus 13 ~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~ 69 (262)
T 2ph1_A 13 RLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLR 69 (262)
T ss_dssp HHTTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCC
T ss_pred hhccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCC
Confidence 34456789999999999999999999999999999999999999997 688899865
No 13
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.68 E-value=5.1e-18 Score=157.21 Aligned_cols=49 Identities=35% Similarity=0.518 Sum_probs=45.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhccc
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~ 139 (390)
+|+| +|||||||||+|+|||..||++|+||++||+|++++++.+||.+.
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l~~~lg~~~ 50 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSI 50 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCH
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcChHHHhCCCc
Confidence 5777 899999999999999999999999999999999999999998653
No 14
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.67 E-value=1.4e-17 Score=162.03 Aligned_cols=50 Identities=26% Similarity=0.541 Sum_probs=43.8
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~ 137 (390)
+.|+|+|. |||||||||+|+|||.+||+.|+||++||+||+++....++.
T Consensus 47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~ 96 (314)
T 3fwy_A 47 GAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTG 96 (314)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHT
T ss_pred CceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccC
Confidence 35677776 999999999999999999999999999999999877666553
No 15
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.67 E-value=5.7e-16 Score=149.67 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=106.0
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcccCCCccccccCC-----------CCC
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQLVPVEGP-----------DFP 153 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~~~~~~~~~v~~~-----------~~~ 153 (390)
...++|+|+|.|||+||||+|+|||..+|+.|+||++||+|++ +++..+|+.+...+-...+.+. ..+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 181 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 181 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCC
Confidence 3568999999999999999999999999999999999999995 7999999865422110000000 001
Q ss_pred eeEEecChHHHHHHHHhhhhhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhccceeccccCchHH
Q 016417 154 LFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLLSLPDFL 233 (390)
Q Consensus 154 L~a~eid~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~g~tLrlL~lp~~l 233 (390)
|+++...+ ......+++....+..+.+.+..-+...+||+ ||++. ..+..
T Consensus 182 l~vl~~g~--------------~~~~~~ell~~~~l~~ll~~l~~~yD~VIIDt-pp~~~---------------~~d~~ 231 (299)
T 3cio_A 182 FDVITRGQ--------------VPPNPSELLMRDRMRQLLEWANDHYDLVIVDT-PPMLA---------------VSDAA 231 (299)
T ss_dssp EEEECCCS--------------CCSCHHHHHTSHHHHHHHHHHHHHCSEEEEEC-CCTTT---------------CTHHH
T ss_pred EEEEECCC--------------CCCCHHHHhCHHHHHHHHHHHHhCCCEEEEcC-CCCch---------------hHHHH
Confidence 22222110 00111222222223333444433222334555 45321 11000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHHHH
Q 016417 234 DASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSES 313 (390)
Q Consensus 234 ~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~ 313 (390)
++. ...+.+++|+.++..+..++.++++.
T Consensus 232 --------------------------------------------------~l~-~~ad~vilV~~~~~~~~~~~~~~~~~ 260 (299)
T 3cio_A 232 --------------------------------------------------VVG-RSVGTSLLVARFGLNTAKEVSLSMQR 260 (299)
T ss_dssp --------------------------------------------------HHG-GGCSEEEEEEETTTSCTTHHHHHHHH
T ss_pred --------------------------------------------------HHH-HHCCEEEEEEcCCCChHHHHHHHHHH
Confidence 000 01357999999999999999999999
Q ss_pred HHhCCCCcceEEEcCccCCC
Q 016417 314 LKKENVPVKRLIVNQIIPPS 333 (390)
Q Consensus 314 L~~~gi~v~gvVvN~v~p~~ 333 (390)
+++.|+++.|+|+|++-+..
T Consensus 261 l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 261 LEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HHHTTCCCCCEEEEECCCCC
T ss_pred HHhCCCCeEEEEEeCCccCC
Confidence 99999999999999997653
No 16
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.66 E-value=1.3e-16 Score=153.71 Aligned_cols=51 Identities=25% Similarity=0.533 Sum_probs=46.7
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQD 138 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~ 138 (390)
..++|+|+ |||||||||+|+|||..|+++|+||++||+|++.++..+|+.+
T Consensus 40 ~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~ 90 (307)
T 3end_A 40 GAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGS 90 (307)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTS
T ss_pred CceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCcc
Confidence 45677777 9999999999999999999999999999999999999999854
No 17
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.65 E-value=8.4e-16 Score=146.43 Aligned_cols=167 Identities=19% Similarity=0.163 Sum_probs=104.3
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhcccCCCccccccCC-----------CCC
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDLTGGQLVPVEGP-----------DFP 153 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~~~~~~~~~v~~~-----------~~~ 153 (390)
...++|+|+|+|||+||||+|+|||..+|+.|+||++||+|++ +++..+||.+...+-...+.+. ..+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 159 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIED 159 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCC
Confidence 3568999999999999999999999999999999999999988 4888889865321110000000 011
Q ss_pred eeEEecChHHHHHHHHhhhhhcCCCcchhhhcccchhhHHHHhhhhhcccccCCCCCChhHHHHhhccceeccccCchHH
Q 016417 154 LFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLLSLPDFL 233 (390)
Q Consensus 154 L~a~eid~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~L~~~~~~~lid~~pPG~de~~~l~~g~tLrlL~lp~~l 233 (390)
|+.+...+ ......+++....+..+.+.+..-+...++|+ ||++. .++..
T Consensus 160 l~vl~~g~--------------~~~~~~ell~~~~l~~ll~~l~~~yD~VIIDt-pp~~~---------------~~d~~ 209 (271)
T 3bfv_A 160 LDVLTSGP--------------IPPNPSELITSRAFANLYDTLLMNYNFVIIDT-PPVNT---------------VTDAQ 209 (271)
T ss_dssp EEEECCCS--------------CCSCHHHHHTSHHHHHHHHHHHHHCSEEEEEC-CCTTT---------------CSHHH
T ss_pred EEEEECCC--------------CCCCHHHHhChHHHHHHHHHHHhCCCEEEEeC-CCCch---------------HHHHH
Confidence 33222110 00111222222223333444443222334555 44321 11100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCcchHHHHHHHHHH
Q 016417 234 DASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSES 313 (390)
Q Consensus 234 ~~~l~~ll~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~t~~~lVt~Pe~~s~~ea~r~~~~ 313 (390)
. +. . . .+.+++|+.++..++.++.++++.
T Consensus 210 ~------------------------------------l~---~--------~----aD~vilVv~~~~~~~~~~~~~~~~ 238 (271)
T 3bfv_A 210 L------------------------------------FS---K--------F----TGNVVYVVNSENNNKDEVKKGKEL 238 (271)
T ss_dssp H------------------------------------HH---H--------H----HCEEEEEEETTSCCHHHHHHHHHH
T ss_pred H------------------------------------HH---H--------H----CCEEEEEEeCCCCcHHHHHHHHHH
Confidence 0 00 0 1 257999999999999999999999
Q ss_pred HHhCCCCcceEEEcCccCCC
Q 016417 314 LKKENVPVKRLIVNQIIPPS 333 (390)
Q Consensus 314 L~~~gi~v~gvVvN~v~p~~ 333 (390)
+++.|+++.|+|+|++-+..
T Consensus 239 l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 239 IEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHTTTCEEEEEEEEEECC--
T ss_pred HHhCCCCEEEEEEeCCcCCC
Confidence 99999999999999987654
No 18
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.64 E-value=1.6e-16 Score=149.81 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=47.1
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhc
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~ 137 (390)
+...+.....++|+|+++||||||||+|+|||..|+ +|+||++||+|+++++..+++.
T Consensus 18 ~~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~ 75 (267)
T 3k9g_A 18 GPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYE 75 (267)
T ss_dssp --------CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHH
T ss_pred CcccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhc
Confidence 344444556789999999999999999999999999 9999999999999988888864
No 19
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.64 E-value=1.5e-15 Score=140.70 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCCC-CCCchHhh
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA-HSLSDSFA 136 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~~-~~l~~~~g 136 (390)
..++|.|+|+||||||||+|+|||..++++ |+||++||+|++ ++++.+|+
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~ 54 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLS 54 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhC
Confidence 468999999999999999999999999999 999999999999 89999995
No 20
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.62 E-value=6.3e-15 Score=135.92 Aligned_cols=52 Identities=35% Similarity=0.494 Sum_probs=47.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhccc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDL 139 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~~ 139 (390)
.++|.|+++||||||||+|++||..++++|+||++||+|++ ++++.+||.+.
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~ 54 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDD 54 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCC
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCC
Confidence 46899999999999999999999999999999999999995 78888887653
No 21
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.62 E-value=2.5e-15 Score=141.21 Aligned_cols=54 Identities=31% Similarity=0.453 Sum_probs=49.1
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhccc
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~ 139 (390)
...++|.|+|+||||||||+|+|||..|++.|+||++||+|+++++..+||.+.
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~l~~~~ 57 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRA 57 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCCC
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHHHHhCCCC
Confidence 346789999999999999999999999999999999999999999988988653
No 22
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.59 E-value=1.2e-14 Score=143.93 Aligned_cols=48 Identities=33% Similarity=0.503 Sum_probs=45.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
++|+|+|+||||||||+|+|||..||+.|+|||+||+|++.++..++.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~ 49 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLML 49 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHS
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhc
Confidence 689999999999999999999999999999999999999998888774
No 23
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.58 E-value=8.5e-15 Score=136.75 Aligned_cols=52 Identities=31% Similarity=0.438 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC-CCCCchHhhccc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP-AHSLSDSFAQDL 139 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~-~~~l~~~~g~~~ 139 (390)
.++|.|+++||||||||+|+|||..|+++|+||++||+|+ ++++..+||.+.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~ 54 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCER 54 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGG
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCC
Confidence 4689999999999999999999999999999999999999 679999998654
No 24
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.57 E-value=1.4e-14 Score=136.04 Aligned_cols=52 Identities=33% Similarity=0.449 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC-CCCchHhhccc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA-HSLSDSFAQDL 139 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~-~~l~~~~g~~~ 139 (390)
.++|.|+++||||||||+|++||..++++|++|++||+|++ ++++.+||.+.
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~ 54 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEG 54 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCC
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCC
Confidence 36899999999999999999999999999999999999994 78888888654
No 25
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.57 E-value=8.1e-15 Score=140.35 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=49.8
Q ss_pred chhhhhhcCCcEEEEEc--CCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 79 GFDEMVAGTQRKYYMLG--GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~--gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
.+.+.+....++++|++ +||||||||+|+|||..|+++|+||++||+|++.++..+++
T Consensus 25 ~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~ 84 (298)
T 2oze_A 25 ELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLA 84 (298)
T ss_dssp HHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHT
T ss_pred HHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 34444555577888888 89999999999999999999999999999999998877774
No 26
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.56 E-value=5.5e-15 Score=135.13 Aligned_cols=48 Identities=33% Similarity=0.380 Sum_probs=45.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~ 137 (390)
++|.|+++||||||||+|+|||..++++| +|+++|+|++.++..|++.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC
Confidence 47899999999999999999999999999 9999999999999999975
No 27
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.51 E-value=7e-14 Score=140.05 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=39.0
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHH------HCCCCeEEEecCCCCCCchHhhccc
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFA------NNGHPTLVVSTDPAHSLSDSFAQDL 139 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a------~~g~~vll~d~D~~~~l~~~~g~~~ 139 (390)
...++|+|+||||||||||+|+|||..|| +.|+||++||+|++++++.+||.+.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~ 168 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTH 168 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCc
Confidence 35789999999999999999999999999 6899999999999999999988653
No 28
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.49 E-value=7.6e-14 Score=139.48 Aligned_cols=53 Identities=26% Similarity=0.306 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCCeEEEecCCCCCCchHhhccc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDPAHSLSDSFAQDL 139 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~------~g~~vll~d~D~~~~l~~~~g~~~ 139 (390)
..++|+|+||||||||||+|+|||..||. .|+||++||+|++++++.+||.+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~~ 165 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKH 165 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCcc
Confidence 46899999999999999999999999994 799999999999999999998653
No 29
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.48 E-value=1.3e-13 Score=131.52 Aligned_cols=48 Identities=27% Similarity=0.515 Sum_probs=43.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~ 137 (390)
++|+| +|||||||||+|+|||..||++|+||++||+||+.++..+++.
T Consensus 3 kvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~ 50 (289)
T 2afh_E 3 RQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILH 50 (289)
T ss_dssp EEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHC
T ss_pred eEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcC
Confidence 46666 7999999999999999999999999999999999988887763
No 30
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.47 E-value=1.1e-13 Score=137.30 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhccc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDL 139 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~ 139 (390)
..++|+|+||||||||||+|+|||..||++|+||++||+|++++++.+||.+.
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~ 194 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEG 194 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSC
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCC
Confidence 57899999999999999999999999999999999999998889999998654
No 31
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.47 E-value=1e-13 Score=130.42 Aligned_cols=47 Identities=28% Similarity=0.482 Sum_probs=42.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
++|.| +|||||||||+|+|||..|+++|+||++||+|++.+...+++
T Consensus 2 ~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~ 48 (269)
T 1cp2_A 2 RQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLL 48 (269)
T ss_dssp EEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHH
T ss_pred cEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhc
Confidence 45666 799999999999999999999999999999999998887765
No 32
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.41 E-value=4.8e-14 Score=134.77 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC-CCCCchHhhcc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP-AHSLSDSFAQD 138 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~-~~~l~~~~g~~ 138 (390)
.++|.|+|+||||||||+|++||..|+++|+||++||+|+ ++++..+|+.+
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~ 55 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENR 55 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCC
Confidence 4689999999999999999999999999999999999999 89999999864
No 33
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.27 E-value=9.7e-11 Score=106.85 Aligned_cols=41 Identities=10% Similarity=0.297 Sum_probs=37.7
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCC
Q 016417 292 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 332 (390)
Q Consensus 292 ~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~ 332 (390)
.+++|+.++..++.++.+.++.++..++++.|+|+|++-+.
T Consensus 140 ~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 140 PVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 48999999999999999999999999999999999998654
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.80 E-value=4.5e-08 Score=98.95 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=37.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCCCCCCc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAHSLS 132 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~~~~l~ 132 (390)
++|++ .|||||||||++++||..++++ |++|+++|+|++.+..
T Consensus 101 ~vI~i-vG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a 144 (433)
T 2xxa_A 101 AVVLM-AGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA 144 (433)
T ss_dssp EEEEE-ECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccH
Confidence 44544 4999999999999999999999 9999999999987544
No 35
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.71 E-value=1.6e-08 Score=93.38 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHh
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSF 135 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~ 135 (390)
++..++++|||||||||++.++|..++++|++|+++|+|++++...+-
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA 52 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH
Confidence 456788999999999999999999999999999999999987766443
No 36
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.59 E-value=4.7e-08 Score=90.87 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=40.9
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~ 132 (390)
....+++++|||||||||++.++|..++ .|++|+++|.|++.+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL 56 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence 4568999999999999999999999999 99999999999987543
No 37
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.54 E-value=2.9e-07 Score=88.50 Aligned_cols=44 Identities=30% Similarity=0.339 Sum_probs=38.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~ 132 (390)
..++++.|++|+||||++.++|..++..|++|+++|+|++.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a 141 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAA 141 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHH
Confidence 34555569999999999999999999999999999999987543
No 38
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.48 E-value=4.3e-06 Score=81.14 Aligned_cols=41 Identities=32% Similarity=0.493 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
.++.+.|.+|+||||++.+||..++..|++|+++|+|++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~ 146 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA 146 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 34444478999999999999999999999999999998753
No 39
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=98.39 E-value=7.2e-07 Score=82.43 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=38.1
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCC
Q 016417 292 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPP 332 (390)
Q Consensus 292 ~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~ 332 (390)
.+++|+.++..++.++...++.++..|+++.|+|+|++-+.
T Consensus 142 pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 142 PVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred CEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 38999999999999999999999999999999999998664
No 40
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=98.34 E-value=6.1e-06 Score=76.98 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=36.6
Q ss_pred hhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
.++.+....+.++|++-.+|||||++++.|+..|+++|++|..+-
T Consensus 13 ~~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 13 GRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp ------CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hhhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 345566677899999999999999999999999999999999984
No 41
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=98.24 E-value=3.8e-05 Score=71.91 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=55.2
Q ss_pred eEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccCCCCCchHHHHHHHHHHHHHHHhhhhcCccCCCceEE-ecC
Q 016417 292 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIE-APL 370 (390)
Q Consensus 292 ~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~l~i~~-vP~ 370 (390)
.+++|+.++..++.++...++.++..|+++.|+|+|++.... ...+ +. .++.|++ + +|+.. +|.
T Consensus 159 pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~--~~~~-----~~---~~~~le~---~--vpvLG~iP~ 223 (251)
T 3fgn_A 159 AALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPP--GLVA-----AS---NRSALAR---I--AMVRAALPA 223 (251)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSC--CHHH-----HH---HHHHHHH---H--SCEEEEEET
T ss_pred CEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCch--hhhh-----hh---HHHHHHH---h--CCEEEEeeC
Confidence 489999999999999999999999999999999999985322 1111 11 2334443 1 56664 587
Q ss_pred CCCCCCCHHHHHHHHHH
Q 016417 371 VDVEIRGVPALRFMGDI 387 (390)
Q Consensus 371 ~~~ev~G~~~L~~l~~~ 387 (390)
.... ...+.+...+..
T Consensus 224 ~~~~-l~~~~~~~~~~~ 239 (251)
T 3fgn_A 224 GAAS-LDAGDFAAMSAA 239 (251)
T ss_dssp TGGG-CCHHHHHHHHHH
T ss_pred CCCc-CCHHHHHHHHhc
Confidence 7544 555666655543
No 42
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.94 E-value=8.9e-06 Score=82.18 Aligned_cols=42 Identities=31% Similarity=0.366 Sum_probs=38.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
..++++.|.+|+||||++++||.+++++|++|+++++|+...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 456777789999999999999999999999999999998764
No 43
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.94 E-value=1.1e-05 Score=77.32 Aligned_cols=44 Identities=30% Similarity=0.573 Sum_probs=37.9
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~ 132 (390)
++++.++ |++|+||||++.++|..++..|.+|+++|+|++.+..
T Consensus 98 ~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~ 141 (295)
T 1ls1_A 98 RNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (295)
T ss_dssp SEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH
Confidence 3455555 9999999999999999999999999999999987433
No 44
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.87 E-value=6.1e-06 Score=83.29 Aligned_cols=40 Identities=30% Similarity=0.388 Sum_probs=35.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
++++.|++||||||++.+||..++++|++|+++|+|++.+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRP 140 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCc
Confidence 4445578999999999999999999999999999999863
No 45
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.85 E-value=1.8e-05 Score=79.79 Aligned_cols=41 Identities=32% Similarity=0.331 Sum_probs=37.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
..++++.|++|+||||++++||..++..|++|+++++|+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 46777779999999999999999999999999999999765
No 46
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.78 E-value=2.4e-05 Score=76.73 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSL 131 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l 131 (390)
...++++.|++|+||||++.+|+..++..|++|+++|.||+.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~ 121 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR 121 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence 34566778999999999999999999999999999999998653
No 47
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.75 E-value=2.8e-05 Score=78.29 Aligned_cols=43 Identities=33% Similarity=0.538 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~ 132 (390)
.++++.|++|+||||++.+||..++..|++|+++|+|++.+..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh
Confidence 3444449999999999999999999999999999999987544
No 48
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.73 E-value=2.8e-05 Score=74.54 Aligned_cols=39 Identities=31% Similarity=0.346 Sum_probs=34.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~~ 129 (390)
++++.|.+|+||||++.+||..++. +|++|+++|+|++.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 4445588999999999999999996 89999999999975
No 49
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.73 E-value=3.4e-05 Score=79.25 Aligned_cols=46 Identities=26% Similarity=0.399 Sum_probs=38.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc-hHh
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS-DSF 135 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~-~~~ 135 (390)
.++++.|.+||||||++.+||..++++|++|+++|+|++.+.. +++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHH
Confidence 3444559999999999999999999999999999999986433 444
No 50
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.59 E-value=8.1e-05 Score=71.69 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
..++++.|.+|+||||++.++|..++..|.+|+++|+|++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 34555567899999999999999999999999999999865
No 51
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=97.42 E-value=0.0002 Score=72.32 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=46.7
Q ss_pred CCcEEEEEcCCC---CCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccC
Q 016417 87 TQRKYYMLGGKG---GVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140 (390)
Q Consensus 87 ~~~~~~~~~gkg---GvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~ 140 (390)
..+.|+|+|..+ |.||||+++|||..+++.|+||+++ =.+++++..||.+.+
T Consensus 56 ~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi--LR~Psl~~~FGikgg 110 (557)
T 3pzx_A 56 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC--LREPSLGPSFGIKGG 110 (557)
T ss_dssp CCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE--ECCCCSHHHHHTCCC
T ss_pred CCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE--eCCCCccccCCCCCC
Confidence 468999999999 9999999999999999999999999 255799999998743
No 52
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.36 E-value=0.00023 Score=69.99 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=45.8
Q ss_pred Cccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 72 APSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 72 ~~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...++...++.++. + ....++++.|++|+||||+|.+++..+++.|.+|+++|++-
T Consensus 43 ~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34556678887775 3 24557777799999999999999999999999999999964
No 53
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.29 E-value=0.00035 Score=63.46 Aligned_cols=55 Identities=25% Similarity=0.448 Sum_probs=45.1
Q ss_pred cccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 74 SEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 74 ~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.++++.+++.+.+ ....++++.|.+|+||||++.+++..++..|.+|++++++..
T Consensus 6 ~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 6 KTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred cCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 4566778877654 244577777999999999999999999999999999999753
No 54
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.25 E-value=0.00037 Score=63.32 Aligned_cols=56 Identities=30% Similarity=0.523 Sum_probs=45.3
Q ss_pred Cccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHH-HHCCCCeEEEecCC
Q 016417 72 APSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKF-ANNGHPTLVVSTDP 127 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~-a~~g~~vll~d~D~ 127 (390)
...++++++|+++.+ ....++++.|.+|+|||+++.++|... .+.|.+|++++++-
T Consensus 11 ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 11 RVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 355678899998875 355688888999999999999998875 45688999999863
No 55
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.12 E-value=0.0005 Score=60.24 Aligned_cols=40 Identities=30% Similarity=0.268 Sum_probs=35.6
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...++++.|..|+||||++..|+..+...|.++.++|.|.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 4467778899999999999999999999999999999773
No 56
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.04 E-value=0.00057 Score=67.33 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=45.4
Q ss_pred Cccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
...+++..++..+. + ....++++.|.+|+||||+|.+++..+++.|.+|+++|++..
T Consensus 54 ~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 54 VVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred eecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 34456667887776 2 234466667999999999999999999999999999999853
No 57
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.02 E-value=0.0007 Score=65.10 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=45.4
Q ss_pred Cccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 72 APSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
....+.+.++.++.+ ....++++.|.+|+||||++.++|..++.+|.+|++++.+
T Consensus 50 ~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 50 GVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 344567788887743 2456888889999999999999999999999999999986
No 58
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.01 E-value=0.00085 Score=65.21 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSL 131 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l 131 (390)
..++.+.|++|+||||+..+++..+...|.+|.+++.|++.+.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence 3455566899999999999999999999999999999998643
No 59
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.97 E-value=0.00067 Score=60.48 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=41.0
Q ss_pred cccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 74 SEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 74 ~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.+++..+++++.+ ....++++.|++|+||||++.+++. ..|.+|++++++.+
T Consensus 3 ~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 3 STGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGG 56 (220)
T ss_dssp CCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCC
T ss_pred ccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCC
Confidence 3456677777753 2456778889999999999999998 56789999999764
No 60
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.91 E-value=0.00083 Score=67.83 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=47.1
Q ss_pred cCccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 71 AAPSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.....+...++.++.+ ....++++.|.+|+||||++.++|..++.+|.+|++++.+-
T Consensus 178 ~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 178 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp CSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3445577788888754 24568888899999999999999999999999999999873
No 61
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.89 E-value=0.0011 Score=64.86 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=45.6
Q ss_pred Cccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 72 APSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 72 ~~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...+++..++..+. + ....++.+.|.+|+||||++.+++..++..|.+|+++|++.
T Consensus 41 ~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 41 VIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34556667887776 3 24456777799999999999999999999999999999974
No 62
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.87 E-value=0.0011 Score=64.60 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=44.2
Q ss_pred ccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 73 PSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 73 ~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...+.+.++.++.+ ....++++.|.+|+||||++.++|..++..|.+|++++.+-
T Consensus 29 i~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 29 IPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp BCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred ccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 34456667766643 24457888899999999999999999999999999999863
No 63
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.85 E-value=0.0014 Score=57.61 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.++.+.|..|+||||++..|+..|..+|++|.++..|+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 356666788999999999999999999999999998875
No 64
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.78 E-value=0.0016 Score=58.24 Aligned_cols=54 Identities=28% Similarity=0.501 Sum_probs=42.0
Q ss_pred ccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 75 ~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
++.+.+++.+.+ ....++++.|.+|+||||++..++..++..|.+|++++.+..
T Consensus 7 tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 7 TGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp CSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 345566666652 234566677999999999999999988888889999998753
No 65
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.73 E-value=0.0018 Score=58.28 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
...++++.|+| .||||.|..+|..++.+|+||+++-....
T Consensus 28 ~g~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg 67 (196)
T 1g5t_A 28 RGIIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKG 67 (196)
T ss_dssp CCCEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CceEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 34678888888 99999999999999999999999988653
No 66
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.69 E-value=0.0016 Score=60.63 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=34.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++++.|-+|+||||+|..|+..+...|..++++|.|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 35778889999999999999999999899999888876
No 67
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.61 E-value=0.0035 Score=61.50 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=46.3
Q ss_pred ccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 73 PSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 73 ~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
..++...++..+. + +...++.+.|.+|+||||++.+++..++..|.+|+++|++...
T Consensus 42 i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 42 IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred ecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 4456667887776 3 2456777889999999999999999999999999999987543
No 68
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.53 E-value=0.0021 Score=65.59 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=46.6
Q ss_pred Cccc-cccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCCC
Q 016417 72 APSE-AVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~-~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~~ 128 (390)
.... +.+.++.++.+ ....++++.|.+|+||||++.++|..++.+ |.+|++++++-.
T Consensus 223 ~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 223 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp CSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred CccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 3445 77788888754 245678888999999999999999999987 999999998643
No 69
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.52 E-value=0.0027 Score=63.85 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=44.4
Q ss_pred Cccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecC
Q 016417 72 APSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTD 126 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D 126 (390)
....+...++.++.+ ....++++.|.+|+||||++.++|...+. .|.+|++++..
T Consensus 182 ~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 182 GVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp -CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 345577788888743 24467888899999999999999999997 58899999986
No 70
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.46 E-value=0.0023 Score=55.53 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|-.|+||||++..|+..+...|+++..++.|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 4677889999999999999999999889999888653
No 71
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.42 E-value=0.0043 Score=62.59 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=44.9
Q ss_pred Cccccccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCC
Q 016417 72 APSEAVSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDP 127 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~ 127 (390)
....+...++.++.+ ....++++.|.+|+||||++.++|..++. .|.+|++++.+.
T Consensus 185 ~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 185 GIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp SBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 344567778877743 24467788899999999999999999986 688999999874
No 72
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.36 E-value=0.0025 Score=61.08 Aligned_cols=89 Identities=24% Similarity=0.246 Sum_probs=54.1
Q ss_pred hhhccchhhhcccccCCCCCCCCccccccccccccccCCccccccccCccccccchhhhhhcC---CcEEEEEcCCCCCc
Q 016417 25 VKRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGT---QRKYYMLGGKGGVG 101 (390)
Q Consensus 25 ~~r~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~gkgGvG 101 (390)
..|+.+++......+.+|..-. ...|.+|....... . ........++... ...-+++.|..|+|
T Consensus 98 ~~r~~~~~~~~~~~~~l~~~~~-~~tfd~f~~~~~~~---~---------~~~~~~~~~i~~~~~~~~~~lll~G~~GtG 164 (308)
T 2qgz_A 98 EAQKQAAISERIQLVSLPKSYR-HIHLSDIDVNNASR---M---------EAFSAILDFVEQYPSAEQKGLYLYGDMGIG 164 (308)
T ss_dssp --CCCCHHHHTEEEESSCGGGG-SCCGGGSCCCSHHH---H---------HHHHHHHHHHHHCSCSSCCEEEEECSTTSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHH-hCCHhhCcCCChHH---H---------HHHHHHHHHHHhccccCCceEEEECCCCCC
Confidence 3677777887777778875300 02255555422100 0 0001122333321 13455667999999
Q ss_pred HHHHHHHHHHHHH-HCCCCeEEEecC
Q 016417 102 KTSCAASLAVKFA-NNGHPTLVVSTD 126 (390)
Q Consensus 102 Ktt~a~~la~~~a-~~g~~vll~d~D 126 (390)
||+++.++|..+. +.|.+|+.+.+.
T Consensus 165 KT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 165 KSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 9999999999999 999999998873
No 73
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.36 E-value=0.0047 Score=55.29 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=38.5
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.+..+........+++.|..|+||||++..++..+...|.++..++++.
T Consensus 42 ~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3444444434456667799999999999999999999999999998753
No 74
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.35 E-value=0.0037 Score=59.93 Aligned_cols=39 Identities=28% Similarity=0.412 Sum_probs=34.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
++.+.|.+|+||||+...+|..+...|.+|++.+.|...
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 444559999999999999999999889999999999754
No 75
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.33 E-value=0.0033 Score=56.12 Aligned_cols=42 Identities=17% Similarity=0.039 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
....+++.|++|+||||+..+++..+... +++.+++.|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK 70 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc
Confidence 33456666999999999999999887655 7999999998643
No 76
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.29 E-value=0.005 Score=54.74 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
...++.+.|..|+||||++..++..+...|.+|.+++.|...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 456788889999999999999999998888899999988543
No 77
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.25 E-value=0.0062 Score=58.97 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=37.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
...++.+.|.+|+||||+...+|..+...|.+|++.+.|...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 456777779999999999999999999999999999999764
No 78
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.25 E-value=0.0029 Score=57.20 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=42.1
Q ss_pred ccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCCeEEEecCC
Q 016417 73 PSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~------~g~~vll~d~D~ 127 (390)
..++++.+++++.+. ...++.+.|.+|+||||++..++...+. .+.+|++++.+.
T Consensus 6 i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 6 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred ecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 456677888888642 4457777799999999999999986443 367899999865
No 79
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.17 E-value=0.0045 Score=54.60 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
..+++.|.+|+||||++..++..+...|.+++.+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 455667999999999999999999999999998876
No 80
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.17 E-value=0.0048 Score=59.91 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=46.6
Q ss_pred ccCccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCCeEEEecCCC
Q 016417 70 VAAPSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDPA 128 (390)
Q Consensus 70 ~~~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~------~g~~vll~d~D~~ 128 (390)
.....++...++.++.+ ....++++.|.+|+||||++.++|...+. .|.+|+++|++..
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 34456677888888864 35568888899999999999999987655 5779999999753
No 81
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.17 E-value=0.0029 Score=60.88 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=45.5
Q ss_pred cCccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCCeEEEecCCC
Q 016417 71 AAPSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDPA 128 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~------g~~vll~d~D~~ 128 (390)
....++++.++.++.+ ....++++.|.+|+||||++.+++...+.. |.+|+++|++-.
T Consensus 87 ~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 87 KKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3445677788888864 245577778999999999999999987665 789999999743
No 82
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.10 E-value=0.0075 Score=53.41 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
....++++.|..|+||||++..|+..+...|..+..+|.|.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 34567777799999999999999999988888778888763
No 83
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.08 E-value=0.0044 Score=53.72 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|-.|+||||++..|+..+...|.+.-++|.|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 4677889999999999999999998888666777754
No 84
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.05 E-value=0.007 Score=52.42 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=33.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..++++.|..|+||||++..|+..+...|.++..+|.|.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 356667799999999999999998888899998888763
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.04 E-value=0.005 Score=53.39 Aligned_cols=37 Identities=27% Similarity=0.245 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~ 125 (390)
...+++.|.+|+||||++..++..+. ..|.+++.++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 35667779999999999999999887 77887777654
No 86
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.02 E-value=0.0059 Score=59.02 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=44.6
Q ss_pred Cccccccchhhhhh----c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEEecCC
Q 016417 72 APSEAVSGFDEMVA----G--TQRKYYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTDP 127 (390)
Q Consensus 72 ~~~~~~~~~~~~~~----~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~d~D~ 127 (390)
...++.+.++..+. + +.. ++.+.|.+|+||||++..++..+++. |.+|+.||+.-
T Consensus 6 risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 6 VVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred EecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 34567778888887 3 234 67888999999999999999998886 78999999863
No 87
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.92 E-value=0.0076 Score=53.86 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTD 126 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D 126 (390)
....++++.|..|+||||++..|+..+. ..|.++..+|.|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 3456777789999999999999999998 789999999866
No 88
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.91 E-value=0.011 Score=56.45 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
..++.+.|.+|+||||+...+|..+...+.+|++.+.|...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 35666669999999999999999999888999999998754
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.85 E-value=0.013 Score=55.17 Aligned_cols=51 Identities=16% Similarity=0.340 Sum_probs=38.7
Q ss_pred ccchhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCC
Q 016417 77 VSGFDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDP 127 (390)
Q Consensus 77 ~~~~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~ 127 (390)
...++...-+ ....++++.|.+|+||||++.+++..++.. |.+|++++.+.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 3445554422 234577777999999999999999999876 88999998864
No 90
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.80 E-value=0.013 Score=51.42 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.++++.|..|+||||+...+...+...|++|..+..|+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 4667779999999999999999999999999999887643
No 91
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.70 E-value=0.0075 Score=55.56 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHH-----CCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN-----NGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~-----~g~~vll~d~D~~ 128 (390)
...++.+.|..|+||||+|..|+..+-. .|++++++|+|--
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 4467778899999999999999887653 3678999999954
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.68 E-value=0.017 Score=52.23 Aligned_cols=54 Identities=33% Similarity=0.572 Sum_probs=39.5
Q ss_pred cccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCCeEEEecCC
Q 016417 74 SEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTDP 127 (390)
Q Consensus 74 ~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a-~~g~~vll~d~D~ 127 (390)
..+++.+++.+.+ ....++.+.|.+|+||||+...++.... ..+.++++++.+.
T Consensus 13 ~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 13 KSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred ecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 4455667766643 2345666679999999999999986655 6777888888753
No 93
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.66 E-value=0.015 Score=56.92 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
..++.+.|.+|+||||+...+|..+...+.+|++.+.|...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 45666669999999999999999999888999999998754
No 94
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.65 E-value=0.0073 Score=51.96 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+++++|-.|+||||++..|+..+ +...+.++.|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 477888999999999999988765 4566667776
No 95
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.64 E-value=0.015 Score=59.46 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
...++.+.|.+|+||||+...|+..+...|.+|++.+.|...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 345666669999999999999999999889999999998764
No 96
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.63 E-value=0.011 Score=52.92 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
..+++.|.+||||||+..+++..+... .++..++.|+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~ 77 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIA 77 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCC
Confidence 344445999999999999999887655 789999998863
No 97
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.63 E-value=0.0067 Score=58.01 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=44.0
Q ss_pred cCccccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHH------------HCC----CCeEEEecCCC
Q 016417 71 AAPSEAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFA------------NNG----HPTLVVSTDPA 128 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a------------~~g----~~vll~d~D~~ 128 (390)
....++++.++.++.+ ....++++.|.+|+||||++.++|...+ ..| .+|+++|++-.
T Consensus 78 ~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 78 WKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp CEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 3345677888888864 3557888889999999999999998643 234 68999998643
No 98
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.54 E-value=0.0069 Score=57.49 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=33.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
+.++.++|..|+||||+|..|+..+-..|.++.++|+|-.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 45677789999999999999999888788899999999765
No 99
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.52 E-value=0.015 Score=49.46 Aligned_cols=29 Identities=34% Similarity=0.467 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
.....+++.|..|+||||++..++..+..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 33344566799999999999999998876
No 100
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.47 E-value=0.016 Score=50.12 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=29.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
++++.|-.|+||||++..|+..+...|..++-.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4667799999999999999999988888876554
No 101
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.43 E-value=0.018 Score=52.57 Aligned_cols=37 Identities=16% Similarity=0.002 Sum_probs=33.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
...+.++.|..|+||||.+..++..++.+|.+|+++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3468888999999999999999999999999999993
No 102
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.38 E-value=0.019 Score=50.03 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=29.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++++.|-.|+||||++..|+..+...|.+|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 56777999999999999999999999998875543
No 103
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.36 E-value=0.014 Score=49.85 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~ 116 (390)
......+++.|..|+||||++..++..+...
T Consensus 40 ~~~~~~vll~G~~G~GKT~la~~~~~~~~~~ 70 (187)
T 2p65_A 40 RRTKNNPILLGDPGVGKTAIVEGLAIKIVQG 70 (187)
T ss_dssp SSSSCEEEEESCGGGCHHHHHHHHHHHHHTT
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3334455777999999999999999988763
No 104
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.34 E-value=0.014 Score=49.60 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++.|..|+||||++..++..+...|.++..++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 3555679999999999999999888888888888764
No 105
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.24 E-value=0.013 Score=54.72 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
..++.+.|.+|+||||++..++..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 356666799999999999999987663
No 106
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.18 E-value=0.016 Score=59.95 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++++.|..|+||||++..|+..+...|+++.++|.|
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 46777889999999999999999999999999999987
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.18 E-value=0.017 Score=50.98 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=32.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+.++.|..|+||||++..++..+..+|++|+++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 477788999999999999999999999999999753
No 108
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.14 E-value=0.017 Score=49.37 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|.+|+||||++..|+.. ......+|+|
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d 35 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINRD 35 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence 57888899999999999888762 2356777775
No 109
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.13 E-value=0.0063 Score=58.91 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=36.5
Q ss_pred ccccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 75 EAVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 75 ~~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+++++++.+ + +...++++.|.+|+||||+|.++|.. .|.+|+++++
T Consensus 108 TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 108 GCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred cCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 4555666666 3 13345678899999999999999886 6789999998
No 110
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.04 E-value=0.028 Score=52.63 Aligned_cols=54 Identities=6% Similarity=-0.037 Sum_probs=44.1
Q ss_pred ccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 73 PSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++++++|+++.+. ...++++.|-+|+||||++..++...+++|.+++++..+
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~ 58 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS 58 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe
Confidence 356788999998873 455666666777777799999999999999999999997
No 111
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.91 E-value=0.028 Score=49.36 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
.++++.|-.|+||||++..|+..+...| ++...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 5778889999999999999999887777 665444
No 112
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.90 E-value=0.037 Score=49.23 Aligned_cols=36 Identities=11% Similarity=-0.095 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
.++.++.|.-|+||||.+..++..+..+|++|+++-
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 468888999999999999999999999999999995
No 113
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.88 E-value=0.029 Score=49.45 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.++++.|-.|+||||++..|+..+...|..|..+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~ 45 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF 45 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeC
Confidence 467777999999999999999999989998865543
No 114
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.84 E-value=0.024 Score=50.02 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
...++++.|..|+||||++..|+..+ | ..++|.|.-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccc
Confidence 34567777999999999999998877 4 567787753
No 115
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.79 E-value=0.024 Score=59.53 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...++++.|-.|+||||++..|+..|.+.|.++..+|.|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 456788889999999999999999999999999999876
No 116
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.73 E-value=0.02 Score=54.15 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...+++++|.+|+||||++..|+..+ +.....||+|
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D 67 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND 67 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence 45788999999999999999987654 2356778876
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.72 E-value=0.019 Score=49.86 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++++.|-.|+||||++..|+..+ |.. ++|.|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D 37 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL---RLP--LLSKD 37 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence 4678888999999999999998876 443 45554
No 118
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.69 E-value=0.017 Score=49.93 Aligned_cols=32 Identities=31% Similarity=0.320 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++.|-.|+||||++..||..+ | .-++|+|
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l---~--~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT---K--RILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH---C--CCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---C--CCEEECh
Confidence 355667999999999999998876 3 3456665
No 119
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.68 E-value=0.026 Score=65.42 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=48.8
Q ss_pred ccCccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 70 VAAPSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 70 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.....++...++..+. + ....++++.|.+|+||||+|.+++...++.|.+|+++|++-.
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s 422 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 422 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 3445567778898886 3 355677788999999999999999999999999999999854
No 120
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.68 E-value=0.026 Score=52.21 Aligned_cols=33 Identities=30% Similarity=0.272 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.++++.|..|+||||+|..||..+ | ..+++.|.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccH
Confidence 467788999999999999998765 3 45678875
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.66 E-value=0.015 Score=49.09 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPT 120 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~v 120 (390)
.++++.|..|+||||++..| .+.|..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~ 28 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKV 28 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcE
Confidence 46778899999999999988 4556553
No 122
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.63 E-value=0.021 Score=52.61 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...++++.|.+|+||||++..|+..+ +..+.++|.|.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 34678888999999999999998765 34578889984
No 123
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.63 E-value=0.019 Score=57.13 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=43.2
Q ss_pred cCccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCCeEEEecCC
Q 016417 71 AAPSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~------~g~~vll~d~D~ 127 (390)
....++++.++.++.+. ...++.+.|..|+||||++.+++..... .+.+|+++|+..
T Consensus 158 ~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 158 ICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 34566788899888652 4457777799999999999998876654 356799998864
No 124
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.60 E-value=0.046 Score=48.55 Aligned_cols=41 Identities=32% Similarity=0.469 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
...++.+.|..|+||||++..|+..+...|..+..|..|..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 45677777999999999999999988777777888888754
No 125
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.58 E-value=0.028 Score=65.11 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=47.7
Q ss_pred ccCccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 70 VAAPSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 70 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.....++...++.++. + ....++++.|.+|+||||++.++|..++..|.+|+++|++-.
T Consensus 710 ~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 710 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred ccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 3445567778888876 2 355677778999999999999999999999999999998743
No 126
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.57 E-value=0.033 Score=57.18 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+.++++.|-+|+||||+|..|+..+-..+.++.+++.|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 456788889999999999999999998889999999988
No 127
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.53 E-value=0.021 Score=50.28 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.++++.|-.|+||||++..|+..+ | ..++|.|.-
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~ 52 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDAL 52 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcC
Confidence 466777999999999999998876 3 557777743
No 128
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.52 E-value=0.029 Score=49.97 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=39.4
Q ss_pred ccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCCeEEEecCC
Q 016417 73 PSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFAN------NGHPTLVVSTDP 127 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~------~g~~vll~d~D~ 127 (390)
...+++.++..+.+. ...++.+.|.+|+||||++..++..+.. .+.+++.++.+.
T Consensus 7 i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 7 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp ECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 345667777777542 4567777799999999999999876554 244677777753
No 129
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.49 E-value=0.042 Score=47.04 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..++++.|..|+||||++..|+..+ | ..++|.|.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 3567777999999999999998765 4 56778774
No 130
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.42 E-value=0.042 Score=48.36 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
.++++.|-.|+||||++..|+..+-..+..+.++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 56777899999999999999999988888885544
No 131
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.41 E-value=0.032 Score=48.21 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++++.|..|+||||+|..|+..+ | ..++|+|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY---G--YTHLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---C--CeEEeHH
Confidence 3577788999999999999988765 3 3457765
No 132
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.40 E-value=0.032 Score=58.03 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNG-HPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g-~~vll~d~D~ 127 (390)
..++++.|-.|+||||+|..|+..|..+| +++.++|.|.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 46788889999999999999999999888 8999999873
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.34 E-value=0.024 Score=49.50 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=31.7
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+..++.......+++.|.+|+||||++..++..+...+..+.++..
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 33444444332236777999999999999999988776655444443
No 134
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.33 E-value=0.041 Score=50.24 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEecCCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVSTDPAH 129 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~D~~~ 129 (390)
....++++.|-.|+||||++..|+..+.. .|++|.++.-.|..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 34578888999999999999999999999 99999886665653
No 135
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.31 E-value=0.041 Score=52.24 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=31.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+++.|..|+||||++..++..+...|.+++.++++
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 455569999999999999999999889999999874
No 136
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.19 E-value=0.055 Score=48.86 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=33.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
..++++.|-.|+||||++..|+..+...|++|.+.. .|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~-~p~ 44 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR-EPG 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE-SSC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc-CCC
Confidence 468888999999999999999999999999996554 343
No 137
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.19 E-value=0.033 Score=65.39 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=45.3
Q ss_pred ccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 73 PSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 73 ~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...+...+++++. + .....+++.|.+|+||||+|.+++....++|.+|+++|++-
T Consensus 1408 isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1408 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred ccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 4456667888877 3 24556777799999999999999999999999999999873
No 138
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.18 E-value=0.036 Score=47.80 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++++.|..|+||||++..|+..+ | ...+|+|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 3577788999999999999998765 3 5667775
No 139
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.17 E-value=0.021 Score=47.83 Aligned_cols=34 Identities=21% Similarity=0.047 Sum_probs=27.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|..|+|||++|.+++....+.+.+.+ +++.
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 345599999999999999887777777777 7764
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.13 E-value=0.028 Score=49.55 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=24.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|..|+||||++..||..+ |.. ++|+|
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence 456667999999999999999877 433 45665
No 141
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.07 E-value=0.054 Score=52.20 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=34.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHH--CCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFAN--NGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~--~g~~vll~d~D~~~ 129 (390)
...++.+.|..|+||||++..++..+.. .+.+|.+++.|...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 3457888899999999999999887764 35689999999654
No 142
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.07 E-value=0.037 Score=47.95 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++++.|..|+||||++..|+.. .+...+.+|.|
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 456777899999999999988764 34556777766
No 143
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.03 E-value=0.04 Score=52.21 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCC--CCeEEE-ecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNG--HPTLVV-STDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g--~~vll~-d~D~~~ 129 (390)
...++.+.|..|+||||++..|+..+...| .++..+ ..|...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 456777889999999999999999888755 445544 999754
No 144
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.02 E-value=0.014 Score=51.62 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=30.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++++.|..|+||||++..|+..+...|.+|.++..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56778999999999999999999888888887764
No 145
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.01 E-value=0.043 Score=52.92 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHC--------CCCeEEEecC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN--------GHPTLVVSTD 126 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~--------g~~vll~d~D 126 (390)
.....+++.|.+|+||||++..++..+... +..++.+++.
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 334467778999999999999999988776 7788888753
No 146
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.96 E-value=0.04 Score=53.56 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=42.6
Q ss_pred cCccccccchhhhhhcC--CcEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCCeEEEecCC
Q 016417 71 AAPSEAVSGFDEMVAGT--QRKYYMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDP 127 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~--~~~~~~~~gkgGvGKtt~a~~la~~~a~~------g~~vll~d~D~ 127 (390)
.....++++++..+.+. ...++.+.|..|+||||++..++...+.. |.+|+.+|+..
T Consensus 111 ~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 111 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp CEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 33456777888887642 55677777999999999999999876432 35789998854
No 147
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.95 E-value=0.036 Score=49.60 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=28.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH-----HCC-CCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFA-----NNG-HPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a-----~~g-~~vll~d~D 126 (390)
.+.++.|.+|+|||+.|..++...+ +.| +++.+...|
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 3677889999999999988877665 677 666666554
No 148
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.92 E-value=0.083 Score=51.25 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHS 130 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~ 130 (390)
..++.+.|.+|+||||+--.|...+...|.+|.++..||+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 356667799999999999999998988999999999999863
No 149
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.91 E-value=0.043 Score=47.33 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|..|+||||++..|+..+ | ...+|+|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l---~--~~~i~~d 36 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL---G--FKKLSTG 36 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---T--CEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CeEecHH
Confidence 467778999999999999998765 3 4556664
No 150
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.91 E-value=0.039 Score=48.04 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|..|+||||++..|+..+ ....++|+|
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l----~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAEL----DGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS----TTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc----CCCEEeeHH
Confidence 456677999999999999888752 146778887
No 151
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.90 E-value=0.03 Score=49.00 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=27.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.++++.|-.|+||||++..|+..+ .|.++..++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 466777999999999999998876 4677776654
No 152
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.87 E-value=0.039 Score=47.91 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=25.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|-.|+||||++..|+..+ | ...+|+|
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l---~--~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY---G--YTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 467777999999999999998766 3 3467765
No 153
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.86 E-value=0.036 Score=46.91 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=25.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
++++.|-.|+||||++..|+..+ | .-++|.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---K--YPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---C--CCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeeecCcc
Confidence 67778999999999999988765 3 44677774
No 154
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.85 E-value=0.036 Score=47.16 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=24.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++++.|-.|+||||++..|+..+ | .-++|+|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g--~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL---G--YEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---C--CcEEccc
Confidence 56677999999999999998866 3 3467776
No 155
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.84 E-value=0.043 Score=64.50 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=47.1
Q ss_pred Cccccccchhhhhh-c--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 72 APSEAVSGFDEMVA-G--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 72 ~~~~~~~~~~~~~~-~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
....+...++..+. + ....++++.|.+|+||||++.++|..++..|.+|+++|+.-.
T Consensus 363 ~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s 422 (2050)
T 3cmu_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 422 (2050)
T ss_dssp EECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred eeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 34556778888876 2 355677788999999999999999999999999999999743
No 156
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.76 E-value=0.072 Score=48.97 Aligned_cols=40 Identities=20% Similarity=0.459 Sum_probs=33.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
..++++.|-.|+||||++..|+..+...|.++.++.-.|.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 4688888999999999999999999999999444444554
No 157
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.76 E-value=0.05 Score=52.16 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~------g~~vll~d~D~~ 128 (390)
....+++.|.+|+||||++..++..+... +..++.+++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 34466778999999999999999988765 566777776543
No 158
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.75 E-value=0.036 Score=47.63 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=24.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+++.|..|+||||++..||..+ ...++|+|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-----~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-----DLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-----CCCEEccc
Confidence 45566999999999999998766 35677876
No 159
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.61 E-value=0.034 Score=48.59 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+.++.+.|..|+||||++..|+.. | ..++|+|
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d 39 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLD 39 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC----C--CEEEccc
Confidence 3467777899999999999888763 5 4567887
No 160
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.61 E-value=0.064 Score=50.99 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a--~~g~~vll~d~D~~~ 129 (390)
...++.+.|..|+||||++..++..+. -.+..+.++++|-..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 446777779999999999999988775 345579999998543
No 161
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.59 E-value=0.054 Score=52.64 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.++++.|..|+||||+|..||..+ .+.+|++|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 578888999999999999998865 3789999964
No 162
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.55 E-value=0.049 Score=47.84 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...++++.|..|+||||++..|+..+ | ...+|+|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d 47 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAG 47 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHH
Confidence 34577888999999999999988653 3 4677776
No 163
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.55 E-value=0.043 Score=47.71 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|..|+||||++..|+..+ | ..++|+|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTG 44 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 467777999999999999998876 2 5567765
No 164
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.53 E-value=0.054 Score=55.54 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=34.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHH-C-CCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFAN-N-GHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~-~-g~~vll~d~D~ 127 (390)
..++++.|-.|+||||++..||..|-. + |+.+-++|.|.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 367788899999999999999999986 5 47788999987
No 165
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.51 E-value=0.055 Score=51.06 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+.+++.|.+|+|||++|.++|..+ |.+++.+++
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 455666999999999999999887 778888875
No 166
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.51 E-value=0.11 Score=47.18 Aligned_cols=37 Identities=11% Similarity=-0.022 Sum_probs=34.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
...+.++.|.-|+||||.+..++..+..+|++|+++-
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3478888999999999999999999999999999985
No 167
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.51 E-value=0.043 Score=47.25 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|-.|+||||++..|+..+ ....+|+|
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~-----~~~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS-----GLKYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh-----CCeEEEHH
Confidence 455677999999999999998776 34556665
No 168
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.51 E-value=0.031 Score=48.33 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=24.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++++.|-.|+||||+|..|+..+ |. .++|+|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---GV--GLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---TC--CEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CC--CEEeCc
Confidence 35667999999999999998866 43 467776
No 169
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.46 E-value=0.062 Score=47.71 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+.++.+.|..|+||||++..|+..+ | .-++|+|
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D 44 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVD 44 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECc
Confidence 55677788999999999999988754 4 6678887
No 170
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.42 E-value=0.081 Score=50.86 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=32.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecCCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTDPAHS 130 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D~~~~ 130 (390)
.+++.|..|+||||++..++..+... +..++.+++....+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 66677999999999999999888776 67888888655443
No 171
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.40 E-value=0.078 Score=55.69 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
-+.++.|.+|+|||++.+.+...+.++|.+||++.-
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 377888999999999999999999999999998864
No 172
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.39 E-value=0.049 Score=46.13 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=24.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+++.|-.|+||||++..|+..+ |. -++|+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~--~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NI--PFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TC--CEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CC--CEEECc
Confidence 45667999999999999998866 43 356765
No 173
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=93.35 E-value=0.46 Score=46.17 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+++++++---.|||||++..|...+.++|.++..+-+
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~t 189 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLAT 189 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEec
Confidence 56788888888999999999999999999999998544
No 174
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.33 E-value=0.056 Score=47.46 Aligned_cols=34 Identities=38% Similarity=0.476 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...++++.|-.|+||||+|..|+..+ |.. ++|+|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 34567778999999999999998876 444 56654
No 175
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.32 E-value=0.099 Score=47.20 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCC-CeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGH-PTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~-~vll~d~D~~~ 129 (390)
..++++-|-.|+||||++..|+..|...|+ .| ++.-.|..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep~~ 43 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREPGG 43 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCCCC
Confidence 357888899999999999999999999998 55 44444543
No 176
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.31 E-value=0.064 Score=53.89 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=29.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCC-CeEEEe
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGH-PTLVVS 124 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~-~vll~d 124 (390)
.+++.|.+|+||||++..++..+...|. +++++.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 7777899999999999999999999987 677764
No 177
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.31 E-value=0.041 Score=46.84 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|..|+||||++..||..+ | ..++|+|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d 36 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSD 36 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---C--CCEEecc
Confidence 355666999999999999888764 2 4567775
No 178
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.28 E-value=0.059 Score=48.10 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|..|+||||++..||..+ | ...+|+|
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 36 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF---H--AAHLATG 36 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---C--ceEEehh
Confidence 456677999999999999998876 3 3456664
No 179
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.24 E-value=0.077 Score=55.11 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=31.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
..++++.|-+|+||||+...++..+...|.+|+++-
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 356777899999999999999999999999999874
No 180
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.21 E-value=0.1 Score=46.31 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=31.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
++++-|--|+||||.+..|+..|..+|++|.+..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 56778999999999999999999999999987654
No 181
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.13 E-value=0.11 Score=49.92 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.+.+++++|..|+||||+|..||..+ ..-+|++|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 34678889999999999999998764 567899984
No 182
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.12 E-value=0.083 Score=49.40 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..+++.|..|+||||+|..+|..+...+.++..+++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 45667799999999999999999988778899998764
No 183
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.06 E-value=0.087 Score=47.91 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
...++++.|-.|+||||++..|+..+.. |..|+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 3467788899999999999999999988 88876543
No 184
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.04 E-value=0.084 Score=50.91 Aligned_cols=35 Identities=34% Similarity=0.394 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
+.++++.|..|+||||++..||..+ ...++|+|..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 3577788999999999999998754 4788999854
No 185
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.01 E-value=0.056 Score=48.33 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++.|..|+||||++..||..+ | .-.+|+|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 37 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY---G--LAHLSTG 37 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--ceEEehh
Confidence 356667999999999999999877 4 4456664
No 186
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.00 E-value=0.067 Score=51.15 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC---CCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN---GHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~---g~~vll~d~D 126 (390)
....+++.|.+|+||||++..++..+... +..++.+++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 34466677999999999999999888776 7788888864
No 187
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.99 E-value=0.082 Score=48.35 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...++++.|..|+||||+|..|+..+ ....+|+|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecH
Confidence 44577778999999999999998766 35566663
No 188
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.99 E-value=0.095 Score=50.86 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=33.1
Q ss_pred CcEEEEE--cCCCCCcHHHHHHHHHHHHHHC------CCCeEEEecCCCCC
Q 016417 88 QRKYYML--GGKGGVGKTSCAASLAVKFANN------GHPTLVVSTDPAHS 130 (390)
Q Consensus 88 ~~~~~~~--~gkgGvGKtt~a~~la~~~a~~------g~~vll~d~D~~~~ 130 (390)
....+++ .|.+|+||||++..++..+... +..++.+++....+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 4456777 9999999999999999887764 56788888754433
No 189
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.96 E-value=0.075 Score=48.56 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHC----CCCeEEEe
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANN----GHPTLVVS 124 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~----g~~vll~d 124 (390)
..++++.|-.|+||||++..|+..+... |++|.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 4688888999999999999999999888 99986543
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.90 E-value=0.089 Score=49.20 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=28.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCC----CeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGH----PTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~----~vll~d~ 125 (390)
-+++.|.+|+|||++|..+|..+...+. +++.++.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 4566699999999999999999988765 5666654
No 191
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.87 E-value=0.083 Score=50.83 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+.+++++|..|+||||++..||..+ ..-+|++|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 4678889999999999999987654 568899984
No 192
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.80 E-value=0.078 Score=47.93 Aligned_cols=32 Identities=31% Similarity=0.311 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++.|..|+||||++..||..+ | ...+|+|
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 456667999999999999999876 2 4566664
No 193
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.71 E-value=0.066 Score=47.45 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=22.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|..|+||||+|..|+..+ | ...+|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY---E--IPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---C--CCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CcEeeHH
Confidence 4567999999999999998765 4 3445553
No 194
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.68 E-value=0.058 Score=47.62 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
..++.+.|..|+||||++..|+..+ ..+.+++.|..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~----~~~~~i~~D~~ 56 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL----PNCSVISQDDF 56 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS----TTEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc----CCcEEEeCCcc
Confidence 4566677999999999998876532 16889999954
No 195
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.67 E-value=0.055 Score=47.53 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=23.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++.+.|..|+||||++..|+. + | +-++|+|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C---C--CEEEEcc
Confidence 456669999999999988876 4 4 6677776
No 196
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.59 E-value=0.053 Score=48.74 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|..|+||||++..|+..+ | ...+|+|
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 39 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF---E--LKHLSSG 39 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS---S--SEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---C--CeEEech
Confidence 467777999999999999988754 3 4566664
No 197
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.51 E-value=0.17 Score=48.82 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
..++.+.|.+|+||||+.-.++..+...+.+|.++..|+..
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 45666779999999999999998888888999999999853
No 198
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.49 E-value=0.081 Score=51.36 Aligned_cols=35 Identities=34% Similarity=0.550 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
..++++.|..|+||||++..||..+ ..-+||+|..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 4578888999999999999888654 5789999954
No 199
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.47 E-value=0.098 Score=46.12 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
..++.+.|..|+||||++..++..+.. ++.+++.|+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 346666799999999999998876632 5889999864
No 200
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.46 E-value=0.073 Score=48.89 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=29.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|..|+|||++|..++..+.+.+.++..+++.
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred EEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 44569999999999999998877777788888874
No 201
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.45 E-value=0.096 Score=52.46 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~d~D 126 (390)
.-+++.|.+|+||||++.+++..+... |.+++.+++.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 345666999999999999999988876 8899998874
No 202
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.32 E-value=0.086 Score=49.29 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|-+|+||||++..|+..+ ....++|+|
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC----CCcEEeccc
Confidence 577888999999999999887632 246777876
No 203
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.12 E-value=0.16 Score=51.91 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=38.5
Q ss_pred cccchhhhhhc--CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 76 AVSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 76 ~~~~~~~~~~~--~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++..++..+.+ ....++.+.|..|+||||++..++..+...|.+++.++.+
T Consensus 266 g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 266 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34455655544 2445666779999999999999999888889888887764
No 204
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.09 E-value=0.053 Score=46.52 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeE
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTL 121 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vl 121 (390)
.++++.|-.|+||||++..|+..+ |..++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 467778999999999999887644 55544
No 205
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.06 E-value=0.11 Score=46.73 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=24.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++++.|..|+||||++..|+..+ |. ..+++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 46677999999999999998876 43 456654
No 206
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.02 E-value=0.07 Score=47.35 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=22.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|..|+||||+|..|+..+ | ...+|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d 32 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY---G--IPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS---S--CCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CcEEeHH
Confidence 4556999999999999987654 4 4455653
No 207
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.92 E-value=0.12 Score=45.00 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=28.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+.+.|..|+||||+...++..+...|+++..|-.|.
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 344479999999999999999999988877766654
No 208
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.85 E-value=0.1 Score=51.88 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
....++++.|-.|+||||+|..|+..+ ...+||.|.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 291 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDT 291 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccch
Confidence 345688888999999999999887543 456677764
No 209
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.83 E-value=0.16 Score=47.10 Aligned_cols=32 Identities=34% Similarity=0.406 Sum_probs=26.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|.+|+|||++|..+|..+ +.++..+++.
T Consensus 53 vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~ 84 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT 84 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEEcch
Confidence 4455999999999999999877 6678888764
No 210
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.72 E-value=0.13 Score=45.60 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.++++.|..|+||||++..|+. .| .-++|+|
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~----lg--~~~id~D 35 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD----LG--INVIDAD 35 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH----TT--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH----cC--CEEEEcc
Confidence 35777889999999999988865 34 5678886
No 211
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.60 E-value=0.14 Score=46.40 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
..+++++.|.+|+||+|.|..|+..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567777999999999999998765
No 212
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.54 E-value=0.13 Score=43.64 Aligned_cols=32 Identities=34% Similarity=0.392 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|-.|+||||++..||..+ |.+ ++|+|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence 466677999999999999988765 444 56765
No 213
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.52 E-value=0.22 Score=45.08 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=26.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
-+++.|.+|+||||+|.++|..+ +.++..+++.
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~ 73 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGA 73 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence 35567999999999999998865 5677777764
No 214
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.48 E-value=0.096 Score=46.07 Aligned_cols=31 Identities=32% Similarity=0.268 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++.+.|..|+||||++..|+. .|. .++|+|
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~----lg~--~~id~d 33 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD----LGV--PLVDAD 33 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT----TTC--CEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH----CCC--cccchH
Confidence 4566779999999999988865 354 456877
No 215
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.42 E-value=0.14 Score=48.03 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
...++++.|..|+||||+|..|+ .+ | .-++|+|
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~l---g--~~~id~D 106 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NL---G--AYIIDSD 106 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HH---T--CEEEEHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HC---C--CcEEehh
Confidence 34677888999999999999998 32 5 4568887
No 216
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.35 E-value=0.13 Score=44.57 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
++++.|-.|+||||++..|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 45667999999999999998876
No 217
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.25 E-value=0.12 Score=45.97 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=23.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|..|+||||++..|+..+ |.. ++|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---g~~--~i~~d 32 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY---GIP--QISTG 32 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCe--EEeHH
Confidence 4666999999999999998876 543 45553
No 218
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.25 E-value=0.098 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++++.|..|+||||++..||..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 456677999999999999998876
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.22 E-value=0.085 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++++.|..|+||||++..|+..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 466777999999999999988765
No 220
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=91.17 E-value=0.71 Score=49.05 Aligned_cols=40 Identities=20% Similarity=0.109 Sum_probs=31.5
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccC
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 331 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p 331 (390)
+.+++|..+..-...++...+..+...++|+. +|+||+-.
T Consensus 107 D~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~ 146 (704)
T 2rdo_7 107 DGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDR 146 (704)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCc
Confidence 57888888877666778888888888898854 78999743
No 221
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.11 E-value=0.21 Score=49.66 Aligned_cols=34 Identities=35% Similarity=0.583 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+.+++++|..|+||||+|..||..+ ..-+|++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~-----~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF-----NGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH-----TEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC-----CCeEeecCc
Confidence 3577888999999999999999876 245799885
No 222
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.07 E-value=0.26 Score=47.01 Aligned_cols=42 Identities=24% Similarity=0.127 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC-C-CCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN-G-HPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g-~~vll~d~D~~~ 129 (390)
...++.+.|..|+||||++-.|+..+... | .++.++..|...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~ 132 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL 132 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC
Confidence 45677778999999999999998877653 4 578899888653
No 223
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.05 E-value=0.13 Score=45.92 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=21.7
Q ss_pred cCCcEEEEEcCCCCCcHHHHHHHHHHH
Q 016417 86 GTQRKYYMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 86 ~~~~~~~~~~gkgGvGKtt~a~~la~~ 112 (390)
....++++++|..|+||||+...|+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 335567788899999999999888754
No 224
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.99 E-value=0.28 Score=45.01 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=33.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
..+.+..|.-|+||||-+...+.....+|++|+++-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 468888999999999999999999999999999997
No 225
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.95 E-value=0.19 Score=52.52 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHH----CCCCeEEE
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFAN----NGHPTLVV 123 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~----~g~~vll~ 123 (390)
+.++++.|.+|+||||+.+.+...+.+ .|.+|+++
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 467888899999999999999888874 46678775
No 226
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.86 E-value=0.25 Score=44.15 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=29.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
+++++=|--|+||||.+..|+..|. +|++|++.-
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 5788889999999999999999996 588887664
No 227
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.78 E-value=0.24 Score=45.06 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC-----CCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN-----GHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~-----g~~vll~d~D~ 127 (390)
...++.+.|..|+||||++..++..+-.. ..++.+++.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 34566677999999999999998766211 24577888874
No 228
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.66 E-value=0.25 Score=49.71 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+.++++.|-.|+||||++..|+..+-..+.++..++.|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 456777789999999999999999988888888887754
No 229
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.53 E-value=0.32 Score=44.71 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
....-+++.|..|+|||++|.++|..+ |.+++.+++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 344566777999999999999998863 566666654
No 230
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.50 E-value=0.14 Score=46.29 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=25.9
Q ss_pred chhhhhhcCC-cEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 79 GFDEMVAGTQ-RKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.+..++.+.. +.-+++.|.+|+||||+|.++|..+
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555433 3357778999999999999999877
No 231
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.45 E-value=0.14 Score=44.77 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=25.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++.+.|..|+||||++..||..+ | ..++|+|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--Cceeccc
Confidence 66778999999999999998766 3 5667776
No 232
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.39 E-value=0.13 Score=45.35 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|-.|+||||+|..++.. |.+++.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecC
Confidence 456699999999999998754 7789888884
No 233
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.24 E-value=0.29 Score=47.76 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+.+++ |..|+||||+...++..+...|.+++++|-+
T Consensus 36 ~~~~i~--G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTIL--AKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCEEEE--CCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CceEEE--cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 344444 9999999999999999888899999998755
No 234
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.22 E-value=0.16 Score=43.89 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
..++++.|..|+||||+...|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3567777999999999999887654
No 235
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.20 E-value=0.17 Score=44.96 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
..++++.|..|+||||++..|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4577778999999999998887643
No 236
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.20 E-value=0.19 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
++++.|.+|+||+|.|..|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 34556999999999999998765
No 237
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.15 E-value=0.24 Score=48.04 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=26.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|..|+||||+|..+|..+ |.++..+++.
T Consensus 75 ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~ 106 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKHL---DIPIAISDAT 106 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEecch
Confidence 4556999999999999999876 6778777764
No 238
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.05 E-value=0.28 Score=44.59 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=23.8
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|..|+||||++..+|..+ +.++..++.
T Consensus 48 vll~G~~GtGKT~la~~la~~~---~~~~~~i~~ 78 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA---KVPFFTISG 78 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---TCCEEEECS
T ss_pred EEEECcCCCCHHHHHHHHHHHc---CCCEEEEeH
Confidence 5566999999999999998765 455655553
No 239
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.02 E-value=0.23 Score=46.62 Aligned_cols=43 Identities=30% Similarity=0.283 Sum_probs=31.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhh
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFA 136 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g 136 (390)
.+++.|..|+||||+|..++..+ +.++..+++.......++++
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHHH
Confidence 45566999999999999998866 56777777765444444444
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.94 E-value=0.24 Score=46.90 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=31.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhc
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~ 137 (390)
+++.|.+|+|||+++.++|..+ +.+...+.+.+.....+++|.
T Consensus 49 vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTTCCHHHHHEE
T ss_pred EEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCCCChhhcCCc
Confidence 3445999999999999998765 567777777655555566654
No 241
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.83 E-value=0.29 Score=47.00 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=26.1
Q ss_pred hhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 016417 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116 (390)
Q Consensus 84 ~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~ 116 (390)
+.+....-++++|++|+|||+++-.++..+.+.
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 334445566778999999999999999998754
No 242
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.73 E-value=0.21 Score=43.14 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|..|+||||++..++. ..+ ....+|.|
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~-g~~~i~~d 35 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLD-NSAYIEGD 35 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSS-SEEEEEHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccC-CeEEEccc
Confidence 4677789999999999999975 222 24566665
No 243
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.71 E-value=0.22 Score=43.60 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANN 116 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~ 116 (390)
..+++.|.+|+||||++..++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 366777999999999999998877654
No 244
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=89.68 E-value=0.31 Score=50.05 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=32.0
Q ss_pred CceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccC
Q 016417 290 STEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 331 (390)
Q Consensus 290 ~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p 331 (390)
.+.+++|..+..-....++.++..+...++| .-+|+||+=-
T Consensus 106 aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl 146 (529)
T 2h5e_A 106 VDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDR 146 (529)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTS
T ss_pred CCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCC
Confidence 3578888887765566778888888889998 5788999754
No 245
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.66 E-value=0.21 Score=51.67 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNG-HPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g-~~vll~d~D~ 127 (390)
...++++.|..|+||||++..|+..+...+ .++.++|.|.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 345667779999999999999999887654 4677888873
No 246
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.62 E-value=0.24 Score=49.96 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=25.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH-------CCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFAN-------NGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~-------~g~~vll~d~ 125 (390)
-+++.|.+|||||+++-.+|..+.. .|.+++-+|+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 3455699999999999999999876 3455555554
No 247
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.34 E-value=0.33 Score=50.76 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~ 125 (390)
.+.++.|.+|+||||+.+.++..+.+ .+.+|+++.-
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 46677899999999999999988887 6778887653
No 248
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.25 E-value=0.26 Score=45.38 Aligned_cols=32 Identities=28% Similarity=0.249 Sum_probs=24.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
-+++.|.+|+||||++.++|..+ +.++..++.
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 35566999999999999997654 556666654
No 249
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.08 E-value=0.23 Score=43.29 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++++.|..|+||||++..|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 466677999999999998887654
No 250
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.93 E-value=0.28 Score=44.90 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.++.+.|..|+||||++..+|..+ ...++|.|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l-----g~~~~d~g 41 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL-----GARYLDTG 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCC
Confidence 3567778999999999999998776 35567765
No 251
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.87 E-value=0.16 Score=47.43 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=25.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCC--eEEEe
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHP--TLVVS 124 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~--vll~d 124 (390)
+++.|.+|+||||++..++..+...+.. ++-++
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~ 83 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELN 83 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee
Confidence 6778999999999999999987654433 44444
No 252
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.81 E-value=0.27 Score=50.09 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++.|..|+||||+|..+|..+ |..++-+++.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 467778999999999999998877 7777777653
No 253
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.79 E-value=0.47 Score=43.99 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~D 126 (390)
...++.+.|..|+||||+...++..+... ..++.+.+-+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 34566777999999999999998877654 3456555543
No 254
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.70 E-value=0.27 Score=43.56 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=23.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
++.+.|..|+||||++..|+..+ | .-.+|+|
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 45566999999999999988754 2 4556765
No 255
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.67 E-value=0.2 Score=47.45 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=29.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++.|..|+|||++|.+++....+.+.+.+.+++.
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred EEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 44559999999999999998777778888888875
No 256
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.67 E-value=0.33 Score=46.84 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=25.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|.+|+|||++|.++|..+ |.+.+-+++
T Consensus 54 vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 54 ILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 4456999999999999999876 667777765
No 257
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=88.65 E-value=0.25 Score=50.63 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHH--HCC--CCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFA--NNG--HPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a--~~g--~~vll~d~D~~ 128 (390)
...++.+.|-||+||||+|..++.... ... ..+..++.+..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 456788889999999999999876432 222 25777776543
No 258
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.54 E-value=0.3 Score=46.05 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=31.7
Q ss_pred hhhhhhc-CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 80 FDEMVAG-TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 80 ~~~~~~~-~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+..++.. ....+++++|..|+||||++..+|..+ +.+++-+++.
T Consensus 38 l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~ 82 (324)
T 3u61_B 38 FKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGS 82 (324)
T ss_dssp HHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETT
T ss_pred HHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccc
Confidence 3444443 233578889999999999999998765 6677777753
No 259
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=88.49 E-value=0.27 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~ 111 (390)
...++.+.|-||+||||+|..++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 346777889999999999988875
No 260
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.42 E-value=0.19 Score=46.89 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=25.8
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCC--eEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHP--TLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~--vll~d~ 125 (390)
+++.|.+|+||||++..++..+...+.. ++-+++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 6778999999999999999988654433 444443
No 261
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=88.28 E-value=0.28 Score=42.66 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++.+.|..|+||||++..++..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 466667999999999999887653
No 262
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.11 E-value=0.33 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++++.|..|+||||++..|+..+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 456666999999999999998766
No 263
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.89 E-value=0.39 Score=43.09 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.+.|+.++||.|+||+|+|-.+...+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 56788888999999999998875544
No 264
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.72 E-value=0.39 Score=45.75 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=24.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
-+++.|.+|+|||++|.++|..+ .+..+..+++
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~ 79 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 79 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEEC
T ss_pred eEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEh
Confidence 44556999999999999998865 3455666665
No 265
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.71 E-value=0.73 Score=44.78 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=29.9
Q ss_pred hhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEe
Q 016417 81 DEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVS 124 (390)
Q Consensus 81 ~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d 124 (390)
.++....+ -++.+.|..|+||||+...++..+... |.+++.++
T Consensus 116 ~~l~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 116 KRVSDVPR-GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp HHHHHCSS-EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHhCCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 33333333 377777999999999999998887765 54554443
No 266
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.70 E-value=0.22 Score=43.93 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=17.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~ 111 (390)
.+|++|+.|+||||+...|..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999877643
No 267
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.63 E-value=0.41 Score=43.14 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++.+.|..|+||||++..|+..+ | ..++|+|
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l---g--~~~~d~d 48 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF---G--FTYLDTG 48 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---C--CceecCC
Confidence 456667999999999999888765 3 5677876
No 268
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.43 E-value=0.41 Score=44.38 Aligned_cols=32 Identities=31% Similarity=0.291 Sum_probs=23.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
-+++.|.+|+||||+|.++|..+ +.+..-+++
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 87 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred eEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence 45566999999999999998754 445555554
No 269
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=87.39 E-value=0.48 Score=51.32 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC-----CCCeEEEe
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN-----GHPTLVVS 124 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~-----g~~vll~d 124 (390)
.+.++|.+-..|||||++++.|...|+++ |++|..+=
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 46799999999999999999999999999 99999875
No 270
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.30 E-value=0.5 Score=50.96 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d 124 (390)
.+.++.|.+|+||||+.+.++..+.+ .+.+|+++-
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 46677899999999999999888887 677887764
No 271
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.28 E-value=0.26 Score=47.01 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=27.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++.|..|+||||++-.+|..+...+.+..++..+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 667799999999999999998876554445555543
No 272
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.13 E-value=0.36 Score=43.37 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+.+++.|..|+||||+|..| +++|. -+|..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~L----a~~g~--~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALEL----VQRGH--RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHH----HTTTC--EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHH----HHhCC--eEEecc
Confidence 456677799999999988665 45566 667776
No 273
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.09 E-value=0.67 Score=45.22 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCCeEEEec
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANN-GHPTLVVST 125 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~-g~~vll~d~ 125 (390)
...++.+.|..|+||||+...++..+... ..+++.++-
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 44566777999999999999999888765 446666664
No 274
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.00 E-value=0.37 Score=44.54 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+++.|..|+||||++..||..+ | .-++|+|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l---g--~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL---G--YTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc---C--CcEEeCc
Confidence 345556999999999999998876 3 4567775
No 275
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.98 E-value=0.48 Score=44.93 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=24.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
-+++.|.+|+|||++|.++|..+ +.++..+++
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 45566999999999999998764 556666654
No 276
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.89 E-value=0.48 Score=45.79 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=24.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|.+|+|||++|.++|..+ +.+++.+++
T Consensus 87 iLL~GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred EEEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 4445999999999999999876 556666654
No 277
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.74 E-value=0.46 Score=45.89 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=25.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
-+++.|..|+|||++|.++|..+ |.+++.+++
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 45556999999999999998654 667777766
No 278
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.73 E-value=0.56 Score=50.00 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=31.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
-+++.|..|||||++|.++|..+-..+.++..+|+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence 466679999999999999999998888899999874
No 279
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.70 E-value=0.42 Score=51.78 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=28.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH-------CCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFAN-------NGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~-------~g~~vll~d~ 125 (390)
-+++.|.+|+||||++..+|..+.. .|.+++.+|+
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 3455699999999999999999877 4667777765
No 280
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.70 E-value=0.3 Score=42.37 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
++.+.|..|+||||+.-.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 566679999999999998887654
No 281
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.56 E-value=0.23 Score=46.24 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=26.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCC--CeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGH--PTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~--~vll~d~ 125 (390)
+++.|..|+||||++..++..+...+. .++-+++
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 677799999999999999998865443 3455554
No 282
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.52 E-value=0.43 Score=44.84 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
..+++.|.+|+||||+|.++|..+ +.+.+.++
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 345566999999999999998765 44555554
No 283
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.35 E-value=0.66 Score=43.54 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.++++.|..|+||||++..++..+ +.+++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence 477788999999999999888765 34688888753
No 284
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.18 E-value=0.42 Score=45.63 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.+++.|.+|+||||++-.+|..+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 45566999999999999999876
No 285
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=86.05 E-value=1.6 Score=42.66 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=32.4
Q ss_pred CceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCcc
Q 016417 290 STEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII 330 (390)
Q Consensus 290 ~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~ 330 (390)
.+.+++|..+..-...++++.+..++..|+|..-+|+||+=
T Consensus 90 aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~D 130 (397)
T 1d2e_A 90 LDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKAD 130 (397)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcc
Confidence 35788888887766777888888888889886678899974
No 286
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.99 E-value=0.88 Score=45.24 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
....++.+.|..|+||||+...++..+.....++.+++-+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 3455777789999999999999888776555567766643
No 287
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=85.93 E-value=0.57 Score=41.18 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHP 119 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~ 119 (390)
.+-+++.|..|+||||+|..|.. +|++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH----TTCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH----cCCe
Confidence 35566779999999999877654 6763
No 288
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=85.60 E-value=1 Score=46.41 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=37.0
Q ss_pred cEEEEE-cCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc
Q 016417 89 RKYYML-GGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132 (390)
Q Consensus 89 ~~~~~~-~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~ 132 (390)
+-|+|. +--.|+||++++++|+..|.++|++|..+-.||.-|+.
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d 48 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVD 48 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSC
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCC
Confidence 456777 44588999999999999999999999999998765544
No 289
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.51 E-value=0.59 Score=44.17 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
+++.|..|+||||++..++..+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 667799999999999999998763
No 290
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=85.43 E-value=0.7 Score=43.67 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=26.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
-+++.|..|+|||++|..+|.. .+.+...+++..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~---~~~~~~~~~~~~ 90 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE---MSANIKTTAAPM 90 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH---TTCCEEEEEGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHH---hCCCeEEecchh
Confidence 3566699999999999998665 467777777643
No 291
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.41 E-value=0.43 Score=45.64 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
..+++.|.+|+|||++|.++|..+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3566779999999999999999875
No 292
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.36 E-value=0.44 Score=43.02 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++++.|--|+||||++..|+..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 567788999999999999998876
No 293
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=85.31 E-value=0.69 Score=49.90 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHH-CCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFAN-NGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~-~g~~vll~d~ 125 (390)
.+.++.|.+|+||||+.+.+...+.+ .+.+|+++..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~ 412 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAP 412 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 46677899999999999999888776 6888988864
No 294
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.23 E-value=0.31 Score=44.49 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.|.+|+|||++|.++|..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5567999999999999998865
No 295
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.21 E-value=0.78 Score=45.82 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+-+++.|.+|+|||++|.++|..+ |.+.+.++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~ 239 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNG 239 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 3456667999999999999998765 556666654
No 296
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.20 E-value=0.7 Score=45.61 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+.+++ |..|+|||+....+...+...|.+++++|-
T Consensus 54 ~h~~i~--G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 54 RHLLVN--GATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GCEEEE--ECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEE--CCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 455555 999999999988888888889999999875
No 297
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=85.18 E-value=1.1 Score=40.52 Aligned_cols=37 Identities=11% Similarity=-0.079 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
...|.++.|--|+||||.....+..+..+|.+|+++-
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 4578888899999999999999999999999999984
No 298
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.98 E-value=0.37 Score=48.61 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=31.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCC-CeEEEecCCCCCCchHh
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGH-PTLVVSTDPAHSLSDSF 135 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~-~vll~d~D~~~~l~~~~ 135 (390)
+.+.|..|+||||+.-.|+-.+...+. +++++|.|+...+..++
T Consensus 141 v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vp 185 (460)
T 2npi_A 141 VVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVP 185 (460)
T ss_dssp EEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCS
T ss_pred EEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeec
Confidence 333499999999999999876655444 55677887655554444
No 299
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.90 E-value=0.52 Score=42.50 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
..++++.|+.|+||||+.-.++..+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4577777999999999998887654
No 300
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.81 E-value=0.52 Score=47.12 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=24.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
-+++.|.+|+|||++|.++|..+... .+..-+++
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~~ 98 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGSK-VPFCPMVG 98 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEEG
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEeH
Confidence 35567999999999999999886321 34444443
No 301
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.77 E-value=0.48 Score=42.94 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=18.8
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.|.+|+||||++..++..+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5566999999999999998754
No 302
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=84.73 E-value=0.99 Score=50.27 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHH--HHH-CCCCeEEEecCCCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVK--FAN-NGHPTLVVSTDPAHSL 131 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~--~a~-~g~~vll~d~D~~~~l 131 (390)
..+++.+.|-||+||||+|..++.. ... -...+..++.+...+.
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~ 195 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence 3467778899999999999988853 222 2446888888655443
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.71 E-value=0.68 Score=40.73 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=21.9
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNG 117 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g 117 (390)
+.+.|..|+||||+...++..+...|
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHhhcccCC
Confidence 34459999999999999998887666
No 304
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=84.71 E-value=0.67 Score=41.96 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..+.++.++|-.|+||||++..||..+ | .-++|.|
T Consensus 12 ~~~~iI~i~g~~gsGk~~i~~~la~~l---g--~~~~d~~ 46 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKKLAEEL---G--IHFYDDD 46 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHHH---T--CEEECHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHc---C--CcEEcHH
Confidence 346788899999999999999999877 4 4457776
No 305
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=84.69 E-value=1.4 Score=39.28 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
..++.++.|.-|+||||--...+.....+|++|+++..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 34688889999999999999988888999999999973
No 306
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.39 E-value=0.7 Score=40.10 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+.+.|+.|+||||+...++-.+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3455999999999999998776
No 307
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=84.39 E-value=1.2 Score=45.86 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=37.3
Q ss_pred cEEEEEcC-CCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc
Q 016417 89 RKYYMLGG-KGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132 (390)
Q Consensus 89 ~~~~~~~g-kgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~ 132 (390)
+-|+|.+| -.++||+.++++|+..|.++|++|..+=.||.-|+.
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d 57 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVD 57 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSS
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccC
Confidence 56777734 478999999999999999999999999999876554
No 308
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.37 E-value=0.58 Score=42.01 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
...++.+-|..|+||||++..|+.. +.+|.+..-
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~ 52 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTE 52 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEec
Confidence 3467777899999999999887664 556766644
No 309
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.34 E-value=0.57 Score=42.84 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++.+.|..|+||||++-.||..|
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 456666999999999999988654
No 310
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=84.32 E-value=0.54 Score=40.21 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.7
Q ss_pred cEEEEEcCCCCCcHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAAS 108 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~ 108 (390)
..++.+.|..|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45666779999999999986
No 311
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=84.26 E-value=0.89 Score=44.32 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=23.3
Q ss_pred hhcCCcEEEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 84 ~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
+..+....+++.|..|+||||++..||..+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3333444566679999999999999987764
No 312
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.24 E-value=0.56 Score=47.03 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=24.5
Q ss_pred hhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+...+......-+++.|.+|+||||+|..++..+
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444444433456777999999999999998754
No 313
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=83.68 E-value=0.59 Score=41.05 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++++.|..|+||||+.-.+...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 345566999999999999887655
No 314
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.68 E-value=0.68 Score=50.18 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.-+++.|..|+|||++|..++..+...+.+++.+++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 35677899999999999999999988888888888753
No 315
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.10 E-value=0.7 Score=46.13 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.-+++.|.+|+|||++|.++|..+ .+..++.+++
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~ 201 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 201 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence 345556999999999999998865 3445555554
No 316
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=83.02 E-value=0.27 Score=45.10 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
...++++-|--|+||||++..|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34688888999999999999888765
No 317
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.96 E-value=0.24 Score=41.18 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=16.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~ 112 (390)
+++.|..|+|||++|.+++..
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 445699999999998877653
No 318
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.90 E-value=0.72 Score=43.83 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=30.0
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
..++++.|..|+||||+--.+... ..|+|+.++.-|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~--~~~~~~aVi~~d~G 41 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFG 41 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSCC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh--cCCCcEEEEEecCc
Confidence 346777899999999998877654 37889999987743
No 319
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=82.67 E-value=0.79 Score=41.31 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
..++++.|-.|+||||++..|+..+.. ++.++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ 37 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLK 37 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEE
Confidence 467888899999999999999998855 444443
No 320
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.62 E-value=0.83 Score=43.48 Aligned_cols=25 Identities=44% Similarity=0.575 Sum_probs=21.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
.+++.|..|+||||++..++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5677899999999999999887743
No 321
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.51 E-value=0.67 Score=42.75 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=18.9
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.|..|+||||++..++..+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 5566999999999999998765
No 322
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.50 E-value=0.88 Score=48.51 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=20.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
+++.|.+|||||++|-.+|..+..
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHS
T ss_pred eEEECCCCCCHHHHHHHHHHHHhc
Confidence 456699999999999999998754
No 323
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=82.36 E-value=0.7 Score=39.43 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=20.3
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
+.++.|..|+||||+.-++...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 566679999999999999988664
No 324
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.22 E-value=0.69 Score=43.00 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=22.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+.+.|.+|+||||++-.+|..+ +...+.++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKG 77 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEc
Confidence 5556999999999999988753 334555554
No 325
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=82.13 E-value=0.99 Score=42.22 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.++++.|..|+||||++..++..+ | ++.++++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence 467778999999999999887653 3 88888753
No 326
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=81.90 E-value=1.2 Score=44.78 Aligned_cols=31 Identities=35% Similarity=0.419 Sum_probs=24.6
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|.+|+||||+|..+|..+ |...+.+|+
T Consensus 53 iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred EEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 3445999999999999998765 667777775
No 327
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=81.80 E-value=1.1 Score=43.67 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=24.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.-+++.|..|+|||++|.++|.. .|.+++.+++
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred ceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 34566699999999999998664 4666666665
No 328
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=81.79 E-value=1.5 Score=43.46 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=29.2
Q ss_pred cccccchhhhhh-cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCC
Q 016417 74 SEAVSGFDEMVA-GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHP 119 (390)
Q Consensus 74 ~~~~~~~~~~~~-~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~ 119 (390)
..++..++-++. ..+.++.++ |..|+||||++..++..+++.+..
T Consensus 159 ~tGiraID~~~pi~rGQr~~Iv-G~sG~GKTtLl~~Iar~i~~~~~~ 204 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIV-APPKAGKTMLLQNIAQSIAYNHPD 204 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEE-CCSSSSHHHHHHHHHHHHHHHCTT
T ss_pred cccceeeeeeeeecCCcEEEEe-cCCCCChhHHHHHHHHHHhhcCCC
Confidence 334444444433 223444444 778999999999999988876544
No 329
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=81.64 E-value=2.7 Score=39.23 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=37.7
Q ss_pred CcEEEEEcCC-CCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCch
Q 016417 88 QRKYYMLGGK-GGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSD 133 (390)
Q Consensus 88 ~~~~~~~~gk-gGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~ 133 (390)
.|-|++++|- .|.||=.+|++++..|..+|++|-++-.||.-|...
T Consensus 23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~ 69 (295)
T 2vo1_A 23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDA 69 (295)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC-
T ss_pred ceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCC
Confidence 3445555554 899999999999999999999999999999876653
No 330
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.44 E-value=0.97 Score=45.22 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+-+++.|.+|+|||++|-++|..+ |.+.+.++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~ 248 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT---NATFLKLAA 248 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 3455566999999999999998764 556666665
No 331
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.40 E-value=0.68 Score=40.78 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++.|..|+||||++..|+..+ | .-++|+|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL---S--MIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---C--CceecCC
Confidence 356677999999999998887654 4 5677876
No 332
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=81.25 E-value=1.6 Score=44.20 Aligned_cols=43 Identities=26% Similarity=0.195 Sum_probs=28.9
Q ss_pred CccccccchhhhhhcC-CcEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 72 APSEAVSGFDEMVAGT-QRKYYMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
+...++..++.+..-. +.+ ..+.|..|+||||++..++...+.
T Consensus 134 ~l~TGir~ID~L~pi~kGq~-~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 134 ILETGIKVVDLLAPYIKGGK-IGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp EECCSCHHHHHHSCEETTCE-EEEECCSSSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHhhhccCCE-EEEECCCCCCccHHHHHHHhhhhh
Confidence 3444666666654422 333 334499999999999999887765
No 333
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=81.22 E-value=0.87 Score=40.02 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
..++.+.|..|+||||+.-.++-.+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3456666999999999999887765
No 334
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.98 E-value=0.67 Score=43.95 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
+++.|..|+||||++-.++..+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 566799999999999999986643
No 335
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.98 E-value=1 Score=45.08 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=25.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+-+++.|.+|+|||++|-++|..+ |.+.+.+++
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~ 248 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPA 248 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 455556999999999999998765 556666665
No 336
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=80.98 E-value=0.77 Score=40.62 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+.++.++|-.|+||||++..||..| |.+ ++|.|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l---g~~--~~D~~ 38 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY---NIP--LYSKE 38 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT---TCC--EECHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh---CcC--EECHH
Confidence 4578888999999999999998866 554 44643
No 337
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=80.85 E-value=1.3 Score=45.34 Aligned_cols=35 Identities=37% Similarity=0.447 Sum_probs=26.1
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
..++++.|.+|+||||++-.+|..+ +.+..-++++
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~ 142 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLG 142 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEec
Confidence 3466777999999999999999887 3444445443
No 338
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=80.70 E-value=1.2 Score=47.27 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=33.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC---CCCCchHhhc
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP---AHSLSDSFAQ 137 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~---~~~l~~~~g~ 137 (390)
-+++.|..|+|||++|..+|..+ |.+...+|+.. .++.+.++|.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~ 536 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCC
Confidence 46667999999999999999988 66777787642 2355555554
No 339
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=80.59 E-value=3.1 Score=42.02 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=36.3
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCchHhhcccC
Q 016417 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140 (390)
Q Consensus 97 kgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~~~~g~~~~ 140 (390)
+-|.||||+++.|+..|.+.|+++.+.= .++|++-.||.+.+
T Consensus 55 PaGEGKtTttiGL~~aL~~lgk~~~~~l--RePSlGP~FGiKGG 96 (543)
T 3do6_A 55 PAGEGKTTTSIGLSMSLNRIGKKSIVTL--REPSLGPTLGLKGG 96 (543)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCCEEEEE--CCCCHHHHHHSCCS
T ss_pred CCCCCccchHHHHHHHHHhcCCeeEEEE--ecCCCCCcCCcccc
Confidence 5799999999999999999999986543 57899999998754
No 340
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=80.58 E-value=0.61 Score=41.69 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=13.9
Q ss_pred EEEEEcCCCCCcHHHHHHHHH-HHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLA-VKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la-~~~ 113 (390)
.++.+.|..|+||||+...|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 466667999999999998887 543
No 341
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=80.22 E-value=1.9 Score=40.04 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=39.6
Q ss_pred CCcEEEEEcCC-CCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc
Q 016417 87 TQRKYYMLGGK-GGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132 (390)
Q Consensus 87 ~~~~~~~~~gk-gGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~ 132 (390)
..|-|++++|- .|.||=.+|++++..|..+|++|-.+-.||.-|+.
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD 68 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINID 68 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCCC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceeec
Confidence 35566666666 99999999999999999999999999999987654
No 342
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=80.18 E-value=1.2 Score=40.11 Aligned_cols=29 Identities=41% Similarity=0.483 Sum_probs=22.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+-..|--|+||||++..++. .| .-++|+|
T Consensus 12 iglTGgigsGKStv~~~l~~----~g--~~vidaD 40 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA----RG--ASLVDTD 40 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH----TT--CEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHH----CC--CcEEECc
Confidence 44558899999999987654 45 5678888
No 343
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=80.03 E-value=6.6 Score=41.42 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=30.8
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCccC
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 331 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~p 331 (390)
+.+++|..+..-...++...+..+.+.++|+. +|+||+=-
T Consensus 102 D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 141 (691)
T 1dar_A 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDK 141 (691)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTS
T ss_pred CEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCc
Confidence 57888888776666677788888888898854 78999743
No 344
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.93 E-value=1.1 Score=44.49 Aligned_cols=33 Identities=33% Similarity=0.255 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+-+++.|.+|+|||++|-++|..+ |.+.+.++.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~ 215 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSG 215 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEh
Confidence 445556999999999999998754 555555554
No 345
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=79.92 E-value=1.2 Score=38.00 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
...++.+.|..|+||||+.-.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34566677999999999999998877
No 346
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=79.87 E-value=0.84 Score=40.73 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++.+.|..|+||||+.-.++..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 345556999999999999988765
No 347
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=79.66 E-value=1.1 Score=37.92 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=15.7
Q ss_pred EEEcCCCCCcHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~ 111 (390)
+++-|.+||||||+...+..
T Consensus 24 i~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 34448999999999888763
No 348
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.39 E-value=0.61 Score=44.07 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a 114 (390)
+++.|..|+|||++|..++..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 55569999999999999988663
No 349
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=79.35 E-value=1.3 Score=38.46 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=23.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHC------CCCeEEE
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANN------GHPTLVV 123 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~------g~~vll~ 123 (390)
+++.+..|+|||.++...+..+... +.+++++
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil 88 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVL 88 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence 4456999999999999888766543 4456555
No 350
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=79.17 E-value=0.96 Score=36.86 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=23.9
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC----CCCcceEEEcCcc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE----NVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~----gi~v~gvVvN~v~ 330 (390)
+.+++|.... ..+..+....+..+... ++| .-+|+|++=
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~D 119 (166)
T 2ce2_X 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSD 119 (166)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchh
Confidence 3555555544 55666666666665553 555 458899964
No 351
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=78.95 E-value=1.3 Score=43.40 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.+.++.+.|..|+||||++..++..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44577778999999999999998753
No 352
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.55 E-value=1.9 Score=45.69 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=25.6
Q ss_pred hhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCC
Q 016417 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNG 117 (390)
Q Consensus 84 ~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g 117 (390)
+....+.-+++.|..|+||||++..+|..+...+
T Consensus 202 l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~ 235 (758)
T 1r6b_X 202 LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD 235 (758)
T ss_dssp HTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTC
T ss_pred HhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 3333344456679999999999999999887653
No 353
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.25 E-value=1.4 Score=44.53 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
..+-+++.|.+|+|||++|-++|..+ |...+.++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~ 276 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIG 276 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEh
Confidence 34556667999999999999998765 455555554
No 354
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=78.16 E-value=1.6 Score=37.25 Aligned_cols=38 Identities=18% Similarity=0.055 Sum_probs=24.1
Q ss_pred ceEEEEeC-CCcchHHHHHHHHHHHHhC----CCCcceEEEcCc
Q 016417 291 TEFVIVTI-PTVMAVSESSRLSESLKKE----NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~-Pe~~s~~ea~r~~~~L~~~----gi~v~gvVvN~v 329 (390)
+.+++|.. -+..++.+....+..+..+ ++| .-+|.|+.
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 129 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQD 129 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 34555543 3466677777777777764 444 35778996
No 355
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=78.05 E-value=1.9 Score=43.90 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=33.8
Q ss_pred cccchhhhhh-c-CCcEEEEEcCCCCCcHHHHHHHHHH-HHHHCCCCeEEEecCC
Q 016417 76 AVSGFDEMVA-G-TQRKYYMLGGKGGVGKTSCAASLAV-KFANNGHPTLVVSTDP 127 (390)
Q Consensus 76 ~~~~~~~~~~-~-~~~~~~~~~gkgGvGKtt~a~~la~-~~a~~g~~vll~d~D~ 127 (390)
+...+++..- + ....++.+.|..|+||||++..++. .+...+..++.++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 3445665544 2 2344555669999999999999643 3334366788888654
No 356
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=77.98 E-value=1.5 Score=36.47 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=23.5
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCc
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v 329 (390)
+.+++|..+.. .......+..+.+.++|+ -+|.|++
T Consensus 83 ~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~-ilv~nK~ 118 (165)
T 2wji_A 83 DLVVNIVDATA--LERNLYLTLQLMEMGANL-LLALNKM 118 (165)
T ss_dssp SEEEEEEETTC--HHHHHHHHHHHHHTTCCE-EEEEECH
T ss_pred CEEEEEecCCc--hhHhHHHHHHHHhcCCCE-EEEEEch
Confidence 46777877654 334445666666777774 5788984
No 357
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=77.83 E-value=1.6 Score=40.77 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=25.3
Q ss_pred hhhhhhcC-C-cEEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 80 FDEMVAGT-Q-RKYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 80 ~~~~~~~~-~-~~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+..++.+. + +.-+++.|.+|+|||++|.++|..+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 55566654 3 4457777999999999999888753
No 358
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=77.74 E-value=1.1 Score=49.47 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHH----CCCCeEEEecCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFAN----NGHPTLVVSTDP 127 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~----~g~~vll~d~D~ 127 (390)
...+++.+.|-||+||||+|..++..... ....+..++...
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 34567777899999999999888765432 223577777654
No 359
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=77.67 E-value=1.3 Score=36.09 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=24.3
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCc
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v 329 (390)
+.+++|......--.....+.+.++..++| .-+|.|+.
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 118 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKV 118 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECC
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECc
Confidence 567777776652222234566667777777 46889995
No 360
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=77.55 E-value=1.3 Score=38.45 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=23.3
Q ss_pred ceEEEEeCCC-cchHHHHH-HHHHHHHhC--CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESS-RLSESLKKE--NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~-r~~~~L~~~--gi~v~gvVvN~v 329 (390)
+.+++|.... ..+..+.. ..+..+... ++| .-+|.|+.
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 144 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKL 144 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEech
Confidence 4566665544 55666665 566666665 555 45778885
No 361
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=77.18 E-value=1.4 Score=44.73 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=25.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
-+++.|.+|+|||++|-++|..+ +.+++.+++
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~ 271 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANET---GAFFFLING 271 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEH
T ss_pred cEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEc
Confidence 35556999999999999997654 667777775
No 362
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=77.13 E-value=1.4 Score=36.22 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=23.6
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC--CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE--NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~--gi~v~gvVvN~v 329 (390)
+.+++|.... ..+..+....+..+... ++| .-+|.|+.
T Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~ 119 (168)
T 1z2a_A 79 QACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKI 119 (168)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECc
Confidence 4666666654 44566666666655543 555 46788996
No 363
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=77.05 E-value=1.6 Score=41.43 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANN 116 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~ 116 (390)
..+++.|..|+||||+|..+|..+-..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 356777999999999999999987643
No 364
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=77.04 E-value=1.9 Score=36.16 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFA 114 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a 114 (390)
.+.++.|..|+||||+--++.+.+-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3666779999999999888887663
No 365
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.70 E-value=1.8 Score=41.18 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++.+.|+.|+||||+...|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 344455999999999999998877
No 366
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=76.64 E-value=2.5 Score=42.74 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=24.3
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|.+|+||||++-++|..+ |.+..-++.
T Consensus 52 vLL~GppGtGKT~Laraia~~~---~~~f~~is~ 82 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA---NVPFFHISG 82 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCeeeCCH
Confidence 4566999999999999998754 566666664
No 367
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=76.58 E-value=1.5 Score=41.91 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHP 119 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~ 119 (390)
..+-+++.|+.|+||||+|..| .++|++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l----~~~G~~ 173 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDL----INKNHL 173 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHH----HTTTCE
T ss_pred CCEEEEEEcCCCCCHHHHHHHH----HHcCCE
Confidence 3456777799999999998664 557764
No 368
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=76.55 E-value=1.6 Score=39.95 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCe
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPT 120 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~v 120 (390)
.++.++|+.|+||||+|..|... .|.++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 46677899999999999877543 45443
No 369
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=76.35 E-value=1.6 Score=41.11 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=24.4
Q ss_pred chhhhhhcCCcEEEEEcCCCCCcHHHHHHHHH
Q 016417 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la 110 (390)
+++++..-....+..+.|..|+||||+.-.++
T Consensus 155 gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 45555554455677778999999999998887
No 370
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=76.15 E-value=1.9 Score=39.58 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=24.1
Q ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCC-CeEEE
Q 016417 93 MLGGKGGVGKTSCAASLAVKFANNGH-PTLVV 123 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~a~~g~-~vll~ 123 (390)
++.+..|+|||.++..++......|. +|+++
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil 163 (282)
T 1rif_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILII 163 (282)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEE
Confidence 34799999999999888877665554 66666
No 371
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=76.13 E-value=2.1 Score=38.62 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=30.9
Q ss_pred hhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 84 VAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 84 ~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.....++++|++|-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 18 ~~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 18 GSHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp ----CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred ccccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 3344678999999999987 477888999999999997654
No 372
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=76.05 E-value=2 Score=36.23 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=16.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la 110 (390)
.-+++-|.+||||||+...+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 344555999999999987775
No 373
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.89 E-value=1.7 Score=43.45 Aligned_cols=34 Identities=29% Similarity=0.242 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
.+-+++.|.+|+|||++|.++|..+ |...+.++.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~ 249 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVG 249 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEES
T ss_pred CCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEH
Confidence 3445556999999999999998764 445555554
No 374
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=75.74 E-value=4.2 Score=41.52 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=38.1
Q ss_pred cEEEEEcCC-CCCcHHHHHHHHHHHHHHCCCCeEEEecCCCCCCc
Q 016417 89 RKYYMLGGK-GGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132 (390)
Q Consensus 89 ~~~~~~~gk-gGvGKtt~a~~la~~~a~~g~~vll~d~D~~~~l~ 132 (390)
|-|+|++|- .|.||-.+|++++..|..+|++|-.+-.||.-|+.
T Consensus 4 k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd 48 (535)
T 3nva_A 4 KYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVD 48 (535)
T ss_dssp EEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSS
T ss_pred eEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeec
Confidence 456666666 89999999999999999999999999999976554
No 375
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=75.71 E-value=2.1 Score=44.24 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=25.5
Q ss_pred EcCCCCCcHHHHHHHHHHHHHHCC----CCeEEEec
Q 016417 94 LGGKGGVGKTSCAASLAVKFANNG----HPTLVVST 125 (390)
Q Consensus 94 ~~gkgGvGKtt~a~~la~~~a~~g----~~vll~d~ 125 (390)
+.|-.|+||||+...-+..+...+ .++|++..
T Consensus 27 V~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltf 62 (647)
T 3lfu_A 27 VLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTF 62 (647)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEES
T ss_pred EEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEec
Confidence 347799999999998877777763 58998875
No 376
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=75.48 E-value=4 Score=37.78 Aligned_cols=36 Identities=22% Similarity=0.559 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
+++++|++|-||.|+. +|..|+++|.+|.+++-+..
T Consensus 47 gk~vlVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~~ 82 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRA-----VSIAFAKEGANIAIAYLDEE 82 (291)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSCH
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCCch
Confidence 5789999999998874 67788999999999988654
No 377
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=75.46 E-value=1.3 Score=37.58 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=14.5
Q ss_pred EEcCCCCCcHHHHHHHHH
Q 016417 93 MLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la 110 (390)
++-|.+||||||+...+.
T Consensus 6 ~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 6 MIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEESCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 344999999999987665
No 378
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=75.37 E-value=1.8 Score=36.71 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=24.2
Q ss_pred ceEEEEeCCCc-chHHHHHHHHHHHHhCCCCcceEEEcCc
Q 016417 291 TEFVIVTIPTV-MAVSESSRLSESLKKENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe~-~s~~ea~r~~~~L~~~gi~v~gvVvN~v 329 (390)
+.+++|..... .+.. ...++..+...++| .-+|+|+.
T Consensus 107 ~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~p-~i~v~nK~ 144 (195)
T 1svi_A 107 KAVVQIVDLRHAPSND-DVQMYEFLKYYGIP-VIVIATKA 144 (195)
T ss_dssp EEEEEEEETTSCCCHH-HHHHHHHHHHTTCC-EEEEEECG
T ss_pred CEEEEEEECCCCCCHH-HHHHHHHHHHcCCC-EEEEEECc
Confidence 56777776553 3333 34566777777877 46889996
No 379
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=75.08 E-value=2.1 Score=36.57 Aligned_cols=38 Identities=29% Similarity=0.235 Sum_probs=22.7
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHh----CCCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKK----ENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~----~gi~v~gvVvN~v 329 (390)
+.+++|.... ..++.+....+..+.. .++| .-+|.|+.
T Consensus 100 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~ 142 (196)
T 2atv_A 100 EGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKA 142 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECc
Confidence 4566666554 4566666665555544 3555 45788986
No 380
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=75.06 E-value=2 Score=38.76 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=22.2
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
.++.+..|+|||.++..++..+ +.+++++-
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~ 140 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVV 140 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 4455899999999988877654 56676664
No 381
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=74.72 E-value=2.2 Score=37.61 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFAN 115 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~ 115 (390)
.+.++.|..|+||||+--++.+.+-.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 36666799999999999988877754
No 382
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=74.54 E-value=2.1 Score=35.59 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=27.2
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCcc
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v~ 330 (390)
+.+++|.........+....+..+...++| .-+|.|++=
T Consensus 80 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~D 118 (178)
T 2lkc_A 80 DIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMD 118 (178)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTT
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECcc
Confidence 567777766655556666677777777777 568889963
No 383
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=74.27 E-value=2.6 Score=42.88 Aligned_cols=31 Identities=35% Similarity=0.394 Sum_probs=24.1
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
+++.|.+|+||||++-++|..+ +...+.++.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g 97 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA---RVPFITASG 97 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 5566999999999999998754 356666665
No 384
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=74.24 E-value=1.7 Score=37.39 Aligned_cols=19 Identities=37% Similarity=0.364 Sum_probs=15.0
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|..||||||+.-.+.
T Consensus 27 i~vvG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 3444999999999987765
No 385
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=74.22 E-value=1.5 Score=37.37 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=25.2
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHh----CCCCcceEEEcCcc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKK----ENVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~----~gi~v~gvVvN~v~ 330 (390)
+.+++|.... ..++.+....+..+.. .++| .-+|.|++=
T Consensus 92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~D 135 (188)
T 1zd9_A 92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRD 135 (188)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCC
Confidence 5677777654 5567777766665543 3555 468899963
No 386
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.13 E-value=1.7 Score=44.97 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=28.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.+++.|..|+||||++-.++..+-........++.++..
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 445569999999999999998775554456667666543
No 387
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=73.88 E-value=1.9 Score=35.19 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=22.6
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC----CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE----NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~----gi~v~gvVvN~v 329 (390)
+.+++|.... ..++.+....+..+... ++| .-+|.|+.
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 119 (168)
T 1u8z_A 77 EGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKS 119 (168)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECc
Confidence 3566665544 55566666555555442 555 45889996
No 388
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=73.77 E-value=2.1 Score=41.19 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
..++++-|-=|+||||++..|+..+...| +++.-.|
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~~~g---v~~trEP 39 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGSRDD---IVYVPEP 39 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC----CC---EEEECCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhCC---EEEEeCC
Confidence 36888899999999999999999988776 4444444
No 389
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=73.46 E-value=2.4 Score=36.13 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=23.2
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC------CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE------NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~------gi~v~gvVvN~v 329 (390)
+.+++|.... ..++.++...+..+... ++| .-+|.|++
T Consensus 93 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~ 137 (187)
T 3c5c_A 93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKL 137 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECc
Confidence 3555555443 55677777666666553 555 45788885
No 390
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=73.45 E-value=2 Score=35.28 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=23.9
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC-----CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE-----NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~-----gi~v~gvVvN~v 329 (390)
+.+++|.... ..+..+....+..+.+. ++| .-+|.|+.
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~ 119 (172)
T 2erx_A 76 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKC 119 (172)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEcc
Confidence 4566666544 45566666666666553 455 46889996
No 391
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=73.32 E-value=2.3 Score=38.80 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=17.9
Q ss_pred EEcCCCCCcHHHHHHHHHHHH
Q 016417 93 MLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~ 113 (390)
-+.|.+|+||||+|..|+..+
T Consensus 12 ~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 12 ILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred eeECCCCCCHHHHHHHHHHHh
Confidence 344999999999999998876
No 392
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=73.11 E-value=2.5 Score=36.20 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=25.1
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC----CCCcceEEEcCcc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE----NVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~----gi~v~gvVvN~v~ 330 (390)
+.+++|.... ..++.+..+.+..+... ++| .-+|.|++=
T Consensus 98 d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~D 141 (192)
T 2b6h_A 98 QGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQD 141 (192)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCC
Confidence 4666666654 55677777776665442 444 468899973
No 393
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=73.09 E-value=2.6 Score=39.79 Aligned_cols=47 Identities=6% Similarity=0.137 Sum_probs=31.3
Q ss_pred hhhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHH---CCCCeEEEecC
Q 016417 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFAN---NGHPTLVVSTD 126 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~---~g~~vll~d~D 126 (390)
+...+.......+++.|..|+||||++..+|..... ....++.++.+
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 344444444557788899999999999999875321 12356666653
No 394
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=73.04 E-value=2.6 Score=41.33 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
...++++-|-=|+||||++..|+..|...| +++.-.|
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g---vv~trEP 84 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD---IVYVPEP 84 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC----CC---EEEECCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhCC---EEEEeCC
Confidence 456888999999999999999999988776 4444444
No 395
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=73.04 E-value=2.2 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCcHHHHHHH-HHHHHHHCCCCeEEEe
Q 016417 90 KYYMLGGKGGVGKTSCAAS-LAVKFANNGHPTLVVS 124 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~-la~~~a~~g~~vll~d 124 (390)
..+++.+..|+|||.++.. +...+...|.+++++-
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 3556679999999999844 4436678888888875
No 396
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=72.66 E-value=2.1 Score=36.36 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=15.4
Q ss_pred EEEEcCCCCCcHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la 110 (390)
-+++.|.+||||||+...+.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34445999999999987764
No 397
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=72.35 E-value=2.2 Score=35.92 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=14.9
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|.+||||||+--.+.
T Consensus 7 i~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3444999999999887764
No 398
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=72.13 E-value=2.5 Score=37.67 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=15.5
Q ss_pred EEEEcCCCCCcHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la 110 (390)
-+++-|+.||||||+.-.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 34445999999999987665
No 399
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=72.01 E-value=2.6 Score=36.11 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=24.0
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC---CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE---NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~---gi~v~gvVvN~v 329 (390)
+.+++|.... ..+..+..+.+..+... ++| .-+|.|++
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~ 143 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKA 143 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECG
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECc
Confidence 4667776654 55666667666666653 555 46788995
No 400
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=72.01 E-value=1.9 Score=36.69 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=24.4
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC------CCCcceEEEcCcc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE------NVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~------gi~v~gvVvN~v~ 330 (390)
+.+++|.... ..++.++...+..+... ++| .-+|.|+.=
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 137 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMD 137 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcC
Confidence 4667776654 45677776666655443 444 458899963
No 401
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=71.92 E-value=2.2 Score=35.20 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=25.4
Q ss_pred ceEEEEeCC-CcchHHHHHHHHHHHHhC----CCCcceEEEcCcc
Q 016417 291 TEFVIVTIP-TVMAVSESSRLSESLKKE----NVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~P-e~~s~~ea~r~~~~L~~~----gi~v~gvVvN~v~ 330 (390)
+.+++|... +..++.+..+.+..+... ++| .-+|.|+.=
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~D 122 (175)
T 2nzj_A 79 SAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKAD 122 (175)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChh
Confidence 355555544 466777887777777765 566 458899974
No 402
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=71.32 E-value=2.8 Score=35.84 Aligned_cols=19 Identities=47% Similarity=0.622 Sum_probs=14.8
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|..||||||+...+.
T Consensus 23 i~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3344999999999987764
No 403
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=71.30 E-value=2.4 Score=34.84 Aligned_cols=19 Identities=42% Similarity=0.494 Sum_probs=14.7
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|..||||||+.-.+.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3444999999999986664
No 404
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=71.20 E-value=2 Score=37.13 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=15.7
Q ss_pred cEEEEEcCCCCCcHHHHHHHH
Q 016417 89 RKYYMLGGKGGVGKTSCAASL 109 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~l 109 (390)
...+.+.|..|+||||+--.+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTT
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 344555699999999987554
No 405
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=71.17 E-value=2.4 Score=34.46 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=14.5
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++-|..|+||||+...+.
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3444999999999976654
No 406
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=70.81 E-value=2.4 Score=36.49 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=15.6
Q ss_pred EEEcCCCCCcHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~ 111 (390)
+++-|..|+||||+--.+..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 44559999999999877653
No 407
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=70.75 E-value=2.5 Score=34.65 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=25.0
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhCCCCc--ceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKENVPV--KRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~gi~v--~gvVvN~v 329 (390)
+.+++|.... ..+..+....+..+...+.+- .-+|.|+.
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~ 121 (170)
T 1z0j_A 80 AAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECC
Confidence 4666666554 556677777777777654432 45667996
No 408
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=70.71 E-value=2.5 Score=38.39 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEE
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHPTLV 122 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll 122 (390)
.++.+.|+.|+||||+.-.++-.+.-...+|.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 455556999999999998887654333234544
No 409
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=70.62 E-value=4.5 Score=37.73 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=25.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC--CCCeEEEe
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANN--GHPTLVVS 124 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~--g~~vll~d 124 (390)
-+++.+..|+|||+++...+..+... |.+++++-
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~ 81 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILT 81 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEEC
T ss_pred CEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEc
Confidence 34556999999999988877766543 66777764
No 410
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.40 E-value=1.3 Score=43.02 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=23.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
++.+.|..|+||||+...++..+... .+.+.++
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 45555999999999999887755433 3455555
No 411
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=70.37 E-value=1.9 Score=36.35 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=25.1
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHh----CCCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKK----ENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~----~gi~v~gvVvN~v 329 (390)
+.+++|.... ..++.+..+.+..+.. .++| .-+|.||.
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 132 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQ 132 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECC
Confidence 5677776654 4577777777666554 3444 56889996
No 412
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=70.37 E-value=2.6 Score=36.15 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~ 111 (390)
..+++-|..||||||+.-.++.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3455569999999999876653
No 413
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=70.33 E-value=2.2 Score=38.68 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++.+.|+.|+||||+.-.++-.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 345555999999999998876543
No 414
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=70.26 E-value=3.3 Score=34.61 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=15.5
Q ss_pred EEEEcCCCCCcHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la 110 (390)
-+++.|..||||||+.-.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34445999999999977665
No 415
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=70.17 E-value=2.6 Score=34.49 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=24.3
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhCCCCc--ceEEEcCcc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKENVPV--KRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~gi~v--~gvVvN~v~ 330 (390)
+.+++|.... ..++.+....+..+.....+- .-+|.|++=
T Consensus 80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D 122 (170)
T 1r2q_A 80 QAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 4667776654 556777777777776643222 345569963
No 416
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=70.10 E-value=2.2 Score=38.00 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=20.0
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCC
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNG 117 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g 117 (390)
++.+.|..|+||||+.-.++-.-...|
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl~p~~G 50 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQALQSK 50 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcCC
Confidence 444459999999999998876533445
No 417
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=70.00 E-value=4.4 Score=40.12 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=30.4
Q ss_pred ccccccchhhhhh-cCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCC
Q 016417 73 PSEAVSGFDEMVA-GTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHP 119 (390)
Q Consensus 73 ~~~~~~~~~~~~~-~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~ 119 (390)
...+...++-+.. +.+.++.++ |-.|+|||+++..++...++.+..
T Consensus 159 ~~tGiraID~l~PigrGQR~lIf-g~~g~GKT~Ll~~Ia~~i~~~~~d 205 (427)
T 3l0o_A 159 KIYSTRLIDLFAPIGKGQRGMIV-APPKAGKTTILKEIANGIAENHPD 205 (427)
T ss_dssp TCHHHHHHHHHSCCBTTCEEEEE-ECTTCCHHHHHHHHHHHHHHHCTT
T ss_pred hhccchhhhhcccccCCceEEEe-cCCCCChhHHHHHHHHHHhhcCCC
Confidence 3445555565543 234555555 557999999999999988765433
No 418
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=69.97 E-value=2.6 Score=34.64 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=23.2
Q ss_pred ceEEEEeCC-CcchHHHHHHHHHHHHhC----CCCcceEEEcCcc
Q 016417 291 TEFVIVTIP-TVMAVSESSRLSESLKKE----NVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~P-e~~s~~ea~r~~~~L~~~----gi~v~gvVvN~v~ 330 (390)
+.+++|... +..++.+....+..+... ++|+ -+|.|+.=
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 120 (169)
T 3q85_A 77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-ILVGNKSD 120 (169)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE-EEEEECTT
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCE-EEEeeCcc
Confidence 345555544 355666666666666553 5554 57889963
No 419
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=69.87 E-value=3.5 Score=34.13 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=25.7
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC-----CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE-----NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~-----gi~v~gvVvN~v 329 (390)
+.+++|.... ..++.+....+..+..+ +.+..-+|.|++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 81 QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 4677776664 44666666666666653 566567889996
No 420
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=69.83 E-value=3.6 Score=37.39 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=33.5
Q ss_pred hhhhhcCCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 81 DEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 81 ~~~~~~~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
..+..-..++++|++|-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 21 ~~m~~~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 63 (260)
T 3un1_A 21 QSMMRNQQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATSRSIK 63 (260)
T ss_dssp HHHHHTTCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred hhhhCcCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 3344445788999999999997 467788999999999987644
No 421
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=69.76 E-value=2.6 Score=34.39 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=24.8
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC----CCCcceEEEcCcc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE----NVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~----gi~v~gvVvN~v~ 330 (390)
+.+++|.... ..++.+..+.+..+... ++| .-+|.|++=
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 112 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQD 112 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcC
Confidence 5666666554 55677777766665442 444 468899963
No 422
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=69.71 E-value=3 Score=39.78 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=21.9
Q ss_pred CCCCcHHHHHHHHHHHHHHCCCCeEEEec
Q 016417 97 KGGVGKTSCAASLAVKFANNGHPTLVVST 125 (390)
Q Consensus 97 kgGvGKtt~a~~la~~~a~~g~~vll~d~ 125 (390)
=||+|||-++..|+..|. ++++.+++=
T Consensus 46 vGGTGKTP~vi~L~~~L~--~~~~~ilsR 72 (315)
T 4ehx_A 46 VGGSGKTSFVMYLADLLK--DKRVCILSR 72 (315)
T ss_dssp SSCCSHHHHHHHHHHHTT--TSCEEEEEC
T ss_pred eCCCChHHHHHHHHHHHh--hcCceEEee
Confidence 499999999999999884 456777664
No 423
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=69.67 E-value=2.7 Score=34.84 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=14.9
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|..|+||||+.-.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3444999999999987764
No 424
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=69.53 E-value=2.7 Score=34.35 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=24.0
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC---CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE---NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~---gi~v~gvVvN~v 329 (390)
+.+++|.... ..+..+....+..+... ++| .-+|.|+.
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 118 (170)
T 1ek0_A 77 QAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKI 118 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECG
T ss_pred cEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECC
Confidence 4667776554 55677777766666553 333 45788996
No 425
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=69.49 E-value=2.6 Score=34.97 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=14.7
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|..||||||+.-.+.
T Consensus 12 i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3444999999999987663
No 426
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=69.49 E-value=2.2 Score=34.96 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=24.7
Q ss_pred ceEEEEeC-CCcchHHHHHHHHHHHHhC----CCCcceEEEcCcc
Q 016417 291 TEFVIVTI-PTVMAVSESSRLSESLKKE----NVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~-Pe~~s~~ea~r~~~~L~~~----gi~v~gvVvN~v~ 330 (390)
+.+++|.. -+..++.+....+..+... ++| .-+|.|+.=
T Consensus 74 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D 117 (166)
T 3q72_A 74 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSD 117 (166)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccc
Confidence 34555543 3466777777777777654 555 457889974
No 427
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=69.45 E-value=2.7 Score=38.49 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.+++++|++|-||.|+. +|..|+++|.+|.+++-+
T Consensus 26 ~gk~vlVTGas~gIG~a-----ia~~la~~G~~V~~~~r~ 60 (266)
T 3grp_A 26 TGRKALVTGATGGIGEA-----IARCFHAQGAIVGLHGTR 60 (266)
T ss_dssp TTCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 46789999999998875 678889999999999865
No 428
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=69.35 E-value=3.1 Score=34.80 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=15.1
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|..||||||+.-.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3444999999999987764
No 429
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=69.18 E-value=4.1 Score=39.36 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=26.0
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
+++.+..|+|||.++...+..+...|.+++++-
T Consensus 39 ~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~ 71 (414)
T 3oiy_A 39 FTMVAPTGVGKTTFGMMTALWLARKGKKSALVF 71 (414)
T ss_dssp EECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 456799999999976666677777788888774
No 430
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=69.11 E-value=2.8 Score=34.22 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=22.7
Q ss_pred ceEEEEeCC-CcchHHHHHHHHHHHHh----CCCCcceEEEcCc
Q 016417 291 TEFVIVTIP-TVMAVSESSRLSESLKK----ENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~P-e~~s~~ea~r~~~~L~~----~gi~v~gvVvN~v 329 (390)
+.+++|... +..++.+....+..+.. .++| .-+|.|+.
T Consensus 76 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 118 (167)
T 1c1y_A 76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKC 118 (167)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECc
Confidence 355665544 45566666666555544 2555 45889996
No 431
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=69.07 E-value=3.5 Score=33.83 Aligned_cols=39 Identities=8% Similarity=-0.060 Sum_probs=24.6
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHh----CCCCcceEEEcCcc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKK----ENVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~----~gi~v~gvVvN~v~ 330 (390)
+.+++|.... ..++.+..+.+..+.. .++| .-+|.|+.=
T Consensus 76 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 119 (171)
T 1upt_A 76 DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQD 119 (171)
T ss_dssp SEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCC
Confidence 5677776654 4467777666665544 3554 568899963
No 432
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=69.05 E-value=3.4 Score=37.91 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.|+++|++|-+|-|+. +|..|+++|.+|.++|.|.
T Consensus 2 nK~vlVTGas~GIG~a-----ia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEecCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 3789999999999985 6888999999999999863
No 433
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=69.05 E-value=2.6 Score=35.67 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=22.5
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHh----CCCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKK----ENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~----~gi~v~gvVvN~v 329 (390)
+.+++|.... ..++.+....+..+.. .++| .-+|.|++
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 137 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKC 137 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 4667776654 4555555555555443 3454 45788996
No 434
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=68.87 E-value=2.5 Score=34.66 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=23.7
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC---CCCcceEEEcCcc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE---NVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~---gi~v~gvVvN~v~ 330 (390)
+.+++|.... ..+..+..+.+..+... ++| .-+|.|++=
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~D 119 (170)
T 1g16_A 77 MGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSD 119 (170)
T ss_dssp EEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcc
Confidence 4566666654 44566666666666553 444 457889863
No 435
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=68.80 E-value=3 Score=36.17 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=15.4
Q ss_pred EEEcCCCCCcHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~ 111 (390)
+++.|.+|+||||+...+..
T Consensus 15 i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 15 IIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 34449999999999877653
No 436
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=68.71 E-value=2.8 Score=34.61 Aligned_cols=38 Identities=18% Similarity=0.007 Sum_probs=23.2
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC---CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE---NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~---gi~v~gvVvN~v 329 (390)
+.+++|.... ..+..+....+..+... ++| .-+|.|+.
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 130 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKA 130 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 4666666654 55666666666655552 333 46788996
No 437
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=68.70 E-value=3.5 Score=34.30 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=14.9
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|..|+||||+...+.
T Consensus 21 i~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3444999999999977765
No 438
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=68.69 E-value=2.1 Score=37.29 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=26.4
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCc
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v 329 (390)
+.+++|.......-.....++..+...++|+ -+|+|++
T Consensus 117 d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~-i~v~nK~ 154 (223)
T 4dhe_A 117 CGMILMMDARRPLTELDRRMIEWFAPTGKPI-HSLLTKC 154 (223)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHGGGCCCE-EEEEECG
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEecc
Confidence 4577777766433345567778888888874 5789996
No 439
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=68.68 E-value=2.8 Score=38.22 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~ 112 (390)
.++.+.|+.|+||||+.-.++-.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34555599999999998887653
No 440
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=68.63 E-value=4.3 Score=37.10 Aligned_cols=34 Identities=26% Similarity=0.684 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
+++++|++|-||.|+. +|..|+++|.+|.+++-+
T Consensus 16 ~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~ 49 (266)
T 3p19_A 16 KKLVVITGASSGIGEA-----IARRFSEEGHPLLLLARR 49 (266)
T ss_dssp CCEEEEESTTSHHHHH-----HHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECC
Confidence 5789999999999984 678889999999999865
No 441
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=68.61 E-value=2.9 Score=34.65 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.0
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|..|+||||+...+.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4444999999999987664
No 442
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.55 E-value=1.1 Score=42.83 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=22.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d 124 (390)
++.+.|..|+||||+...++..+... ...+.++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~ 205 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIE 205 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEEC
Confidence 44555999999999998887665433 3445554
No 443
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=68.47 E-value=2.3 Score=35.71 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.0
Q ss_pred EcCCCCCcHHHHHHHHH
Q 016417 94 LGGKGGVGKTSCAASLA 110 (390)
Q Consensus 94 ~~gkgGvGKtt~a~~la 110 (390)
+.|.+||||||+.-.+.
T Consensus 6 v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 6 FAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEBTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHh
Confidence 34999999999987764
No 444
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=68.45 E-value=2.2 Score=38.27 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=16.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~ 111 (390)
++.+.|+.|+||||+.-.++-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 444559999999999877654
No 445
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=68.44 E-value=2.5 Score=38.19 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~ 111 (390)
.++.+.|+.|+||||+.-.++-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3445559999999999877764
No 446
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=68.26 E-value=3.1 Score=37.88 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++.+.|..|+||||+.-.++-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 355556999999999998887644
No 447
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=68.25 E-value=2 Score=43.69 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=17.9
Q ss_pred EEcCCCCCcHHHHHHHHHHHH
Q 016417 93 MLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 93 ~~~gkgGvGKtt~a~~la~~~ 113 (390)
++.|.+|+|||++|.++|..+
T Consensus 45 LL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 45 FLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEECCSSSSHHHHHHHGGGGB
T ss_pred EeecCchHHHHHHHHHHHHHH
Confidence 334999999999999998866
No 448
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=68.17 E-value=3.1 Score=38.43 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~ 112 (390)
.++.+.|+.|+||||+.-.++-.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34555599999999998877653
No 449
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=67.79 E-value=2.7 Score=36.15 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=24.4
Q ss_pred ceEEEEeCCC-cchHHHH-HHHHHHHHhC--CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSES-SRLSESLKKE--NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea-~r~~~~L~~~--gi~v~gvVvN~v 329 (390)
+.+++|.... ..++.+. .+.+..++.. ++|+ -+|.|++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~ 139 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKK 139 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEecH
Confidence 4666665443 4566666 5666666665 6664 5889996
No 450
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=67.76 E-value=3.9 Score=36.96 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++++|++|-+|.|+. +|..|+++|.+|.+++-+.
T Consensus 7 ~k~vlVTGas~GIG~a-----ia~~l~~~G~~V~~~~r~~ 41 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAE-----IAKKFAAEGFTVFAGRRNG 41 (252)
T ss_dssp SCEEEEECCSSHHHHH-----HHHHHHHTTCEEEEEESSG
T ss_pred CCEEEEECCCchHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 5789999999998875 7788899999999998754
No 451
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=67.74 E-value=4.3 Score=36.57 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
+++++|++|-+|.|+. +|..|+++|.+|.+++-+..
T Consensus 7 ~k~~lVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 7 SRVFIVTGASSGLGAA-----VTRMLAQEGATVLGLDLKPP 42 (257)
T ss_dssp TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCChH
Confidence 5789999999999975 67788999999999987654
No 452
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=67.71 E-value=4.9 Score=36.88 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.+++++|++|-+|.|+. +|..|+++|.+|.+++-++.
T Consensus 32 ~gk~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~~ 68 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAA-----IAEGLAGAGAHVILHGVKPG 68 (275)
T ss_dssp TTCEEEETTCSSHHHHH-----HHHHHHHTTCEEEEEESSTT
T ss_pred CCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEcCCHH
Confidence 46789999999998875 67788999999999988654
No 453
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=67.69 E-value=3.7 Score=33.94 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=15.4
Q ss_pred EEEcCCCCCcHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~ 111 (390)
+++.|..||||||+.-.+..
T Consensus 12 i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 44449999999999877653
No 454
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=67.67 E-value=3 Score=35.82 Aligned_cols=19 Identities=42% Similarity=0.576 Sum_probs=14.6
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++-|.+||||||+...+.
T Consensus 9 v~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3444999999999886654
No 455
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=67.66 E-value=3.1 Score=39.98 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=18.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.+.+.|..|+||||++..|+..+
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 34445999999999999988754
No 456
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=67.61 E-value=2.5 Score=45.58 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~ 111 (390)
+-+++.|.+|+|||++|-++|.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4455669999999999999985
No 457
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=67.44 E-value=3.1 Score=34.85 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=24.3
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHh----CCCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKK----ENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~----~gi~v~gvVvN~v 329 (390)
+.+++|.... ..+..+....+..+.. .++| .-+|.|+.
T Consensus 95 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 137 (195)
T 3bc1_A 95 MGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKS 137 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 5677776654 5566666666666655 3444 46788986
No 458
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=67.40 E-value=2.7 Score=37.82 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=17.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
++.+.|+.|+||||+.-.++-.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 44455999999999988776543
No 459
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=67.33 E-value=3.1 Score=39.68 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHP 119 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~ 119 (390)
.+-+++.|..|+||||+|..|. ++|++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~----~~g~~ 170 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELI----KRGHR 170 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH----HTTCE
T ss_pred CEEEEEEeCCCCCHHHHHHHHH----hcCCc
Confidence 3456667999999999887764 45653
No 460
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=67.32 E-value=2.7 Score=35.42 Aligned_cols=39 Identities=10% Similarity=0.207 Sum_probs=27.3
Q ss_pred CceEEEEeCCCcchHHHHHHHHHHHHhCCCCcceEEEcCc
Q 016417 290 STEFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQI 329 (390)
Q Consensus 290 ~t~~~lVt~Pe~~s~~ea~r~~~~L~~~gi~v~gvVvN~v 329 (390)
.+.+++|..+..........+...+...++|+ -+|.|+.
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~ 143 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPF-TIVLTKM 143 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECG
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEECh
Confidence 35677787766544445556777888888875 5789996
No 461
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=67.15 E-value=3.3 Score=44.58 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~ 112 (390)
.-+++.|.+|+||||++-++|..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 34566699999999999998764
No 462
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=67.09 E-value=3.1 Score=35.95 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=15.3
Q ss_pred EEEcCCCCCcHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~ 111 (390)
+++.|.+||||||+...+..
T Consensus 10 i~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 33449999999999877653
No 463
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=67.02 E-value=3.5 Score=37.71 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.+++++|++|-+|.|+. +|..|+++|.+|.+++.+..
T Consensus 13 ~~k~vlVTGas~GIG~a-----ia~~l~~~G~~V~~~~r~~~ 49 (269)
T 3vtz_A 13 TDKVAIVTGGSSGIGLA-----VVDALVRYGAKVVSVSLDEK 49 (269)
T ss_dssp TTCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESCC-
T ss_pred CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCch
Confidence 46889999999999874 77888999999999987654
No 464
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=67.00 E-value=4 Score=36.18 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAH 129 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~~ 129 (390)
.++++|++|-||.|+. ++..|+++|++|.+++-++..
T Consensus 3 ~k~vlITGas~gIG~~-----~a~~l~~~G~~V~~~~r~~~~ 39 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSA-----ILEFFKKNGYTVLNIDLSAND 39 (236)
T ss_dssp CEEEEEETTTSHHHHH-----HHHHHHHTTEEEEEEESSCCT
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEecCccc
Confidence 4678999999998875 677888999999999876543
No 465
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=66.99 E-value=4 Score=36.46 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
.++++|++|-||.|+. +|..|+++|.+|.+++-+.
T Consensus 3 ~k~vlVTGas~GIG~a-----~a~~l~~~G~~V~~~~r~~ 37 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRA-----LTIGLVERGHQVSMMGRRY 37 (235)
T ss_dssp CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence 4689999999999984 7788899999999998753
No 466
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=66.97 E-value=5.9 Score=39.23 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCcHHHH-HHHHHHHHHHCCCCeEEEe
Q 016417 89 RKYYMLGGKGGVGKTSC-AASLAVKFANNGHPTLVVS 124 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~-a~~la~~~a~~g~~vll~d 124 (390)
+.++++.++.|+|||+. ...+...+...|.+++++-
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~ 55 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILA 55 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEEC
Confidence 44666779999999994 5555555667788888886
No 467
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=66.97 E-value=3.2 Score=34.44 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=14.8
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|..||||||+.-.+.
T Consensus 13 i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3444999999999987664
No 468
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=66.86 E-value=3.8 Score=34.40 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=25.1
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC----CCCcceEEEcCcc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE----NVPVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~----gi~v~gvVvN~v~ 330 (390)
+.+++|.... ..++.++.+.+..+... ++| .-+|.|+.=
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 130 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQD 130 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCcc
Confidence 5667776654 55677777766665443 444 568899963
No 469
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=66.82 E-value=4 Score=37.61 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++++|++|-||.|+. +|..|+++|.+|.++|-+.
T Consensus 29 gk~vlVTGas~gIG~a-----ia~~la~~G~~V~~~~r~~ 63 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLA-----VARRLADEGCHVLCADIDG 63 (277)
T ss_dssp TCEEEETTTTSTHHHH-----HHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 5789999999999984 7778899999999998753
No 470
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=66.79 E-value=3.1 Score=40.01 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 89 ~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
..++++-|-=|+||||++..|+..+...+ + +++.-.|.
T Consensus 7 ~~fI~~EG~dGaGKTT~~~~La~~L~~~~-~-v~~trEPg 44 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMASAASGGS-P-TLYFPEPM 44 (334)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGGGCSS-C-EEEECCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccCC-c-EEEEeCCC
Confidence 46888899999999999999999887643 3 44445454
No 471
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=66.79 E-value=6.4 Score=35.98 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++++|++|-+|.|+. +|..|+++|.+|.+++-+.
T Consensus 27 ~k~~lVTGas~GIG~a-----ia~~l~~~G~~V~~~~r~~ 61 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFR-----IAEIFMRHGCHTVIASRSL 61 (277)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEeCCCchHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 5789999999998876 6778889999999998753
No 472
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=66.79 E-value=4.4 Score=36.12 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.++++|++|-||.|+. ++..|+++|.+|.+++-++.
T Consensus 7 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~ 42 (241)
T 1dhr_A 7 ARRVLVYGGRGALGSR-----CVQAFRARNWWVASIDVVEN 42 (241)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHTTTCEEEEEESSCC
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHhCCCEEEEEeCChh
Confidence 5789999999998885 67788899999999987654
No 473
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.74 E-value=2.8 Score=38.04 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=17.1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~ 112 (390)
++.+.|+.|+||||+.-.++-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4455599999999998777654
No 474
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=66.62 E-value=3.6 Score=37.22 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=14.7
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++-|++||||||+.-.+.
T Consensus 24 I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 4444999999999986653
No 475
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=66.59 E-value=2.9 Score=38.48 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~ 112 (390)
.++.+-|..|+||||+.-.++-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34445599999999998877653
No 476
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=66.53 E-value=2.9 Score=38.60 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++.+.|..|+||||+.-.++-.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344555999999999988776543
No 477
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=66.50 E-value=4 Score=34.57 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=15.2
Q ss_pred EEEcCCCCCcHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~ 111 (390)
+++-|.+||||||+.-.+..
T Consensus 11 i~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHc
Confidence 33449999999999877653
No 478
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=66.47 E-value=4.2 Score=36.73 Aligned_cols=35 Identities=17% Similarity=0.424 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++++|++|-||.|+. +|..|+++|.+|.++|-+.
T Consensus 8 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 42 (259)
T 4e6p_A 8 GKSALITGSARGIGRA-----FAEAYVREGATVAIADIDI 42 (259)
T ss_dssp TCEEEEETCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 5789999999999875 6788899999999998753
No 479
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=66.46 E-value=2.9 Score=38.45 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++.+.|+.|+||||+.-.++-.+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 345555999999999998887544
No 480
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=66.41 E-value=4.1 Score=36.58 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D 126 (390)
.++++|++|-||.|+. +|..|+++|.+|.++|-+
T Consensus 2 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 35 (247)
T 3dii_A 2 NRGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDID 35 (247)
T ss_dssp CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4689999999999975 677889999999998865
No 481
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=66.41 E-value=6.5 Score=34.68 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=15.9
Q ss_pred EEEcCCCCCcHHHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~ 113 (390)
+++.+..|+|||.+....+...
T Consensus 65 ~li~a~TGsGKT~~~~~~~l~~ 86 (236)
T 2pl3_A 65 VLGAAKTGSGKTLAFLVPVLEA 86 (236)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 4455899999999876655543
No 482
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=66.31 E-value=2.9 Score=35.25 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=15.3
Q ss_pred EEEcCCCCCcHHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLAV 111 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~ 111 (390)
+++-|.+||||||+.-.+..
T Consensus 10 i~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 34449999999999877653
No 483
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=66.31 E-value=4.5 Score=36.03 Aligned_cols=36 Identities=28% Similarity=0.574 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
+++++|++|-||.|+. +|..|+++|.+|.+++-++.
T Consensus 2 ~k~vlVTGas~giG~~-----~a~~l~~~G~~V~~~~r~~~ 37 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRA-----IAEALVARGYRVAIASRNPE 37 (239)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSCH
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCCHH
Confidence 3679999999999985 67788899999999987653
No 484
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=66.30 E-value=4.8 Score=36.69 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
+++++|++|-+|.|+. +|..|+++|.+|.++|-+..
T Consensus 11 ~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~~ 46 (271)
T 3tzq_B 11 NKVAIITGACGGIGLE-----TSRVLARAGARVVLADLPET 46 (271)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEECTTS
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEcCCHH
Confidence 5789999999998875 67788999999999987643
No 485
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=66.28 E-value=3 Score=34.48 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=22.9
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhC---CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKE---NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~---gi~v~gvVvN~v 329 (390)
+.+++|.... ..+..+....+..+... ++| .-+|+|+.
T Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~ 129 (179)
T 2y8e_A 88 TVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKT 129 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECC
Confidence 4566666654 45666666666655543 443 45788986
No 486
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=66.10 E-value=3.9 Score=37.20 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 87 ~~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
.+++++|++|-||.|+ ++|..|+++|.+|.+++-+..
T Consensus 26 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 62 (260)
T 3gem_A 26 SSAPILITGASQRVGL-----HCALRLLEHGHRVIISYRTEH 62 (260)
T ss_dssp -CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEESSCC
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 3578999999999887 477788999999999987654
No 487
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=66.05 E-value=2.9 Score=35.84 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=21.4
Q ss_pred ceEEEEeCCCcchHHHHHHHHHHHHh-----CCCCcceEEEcCc
Q 016417 291 TEFVIVTIPTVMAVSESSRLSESLKK-----ENVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe~~s~~ea~r~~~~L~~-----~gi~v~gvVvN~v 329 (390)
+.+++|............++...+.+ .++| .-+|.|+.
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~ 139 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKV 139 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECG
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEecc
Confidence 57777777665433333444343333 2554 45788996
No 488
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=66.04 E-value=4.3 Score=40.46 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=25.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCC-CeEEEe
Q 016417 92 YMLGGKGGVGKTSCAASLAVKFANNGH-PTLVVS 124 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la~~~a~~g~-~vll~d 124 (390)
.++.+..|.|||.++..++..+...+. +|+++-
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~ 164 (510)
T 2oca_A 131 RILNLPTSAGRSLIQALLARYYLENYEGKILIIV 164 (510)
T ss_dssp EEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 345599999999999988887776665 677664
No 489
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=66.04 E-value=3.4 Score=34.33 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=23.9
Q ss_pred ceEEEEeCCC-cchHHHHH-HHHHHHHhC--CCCcceEEEcCc
Q 016417 291 TEFVIVTIPT-VMAVSESS-RLSESLKKE--NVPVKRLIVNQI 329 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~-r~~~~L~~~--gi~v~gvVvN~v 329 (390)
+.+++|.... ..++.+.. ..+..++.. ++| .-+|.|+.
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 122 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKL 122 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEech
Confidence 4667776654 55666665 466666654 455 45788985
No 490
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=66.04 E-value=3.6 Score=37.12 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=15.4
Q ss_pred EEEEcCCCCCcHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la 110 (390)
-+++.|.+|+||||+.-.+.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34445999999999987764
No 491
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=65.85 E-value=2.9 Score=38.10 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=17.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
++.+.|..|+||||+.-.++-.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 44455999999999988776543
No 492
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=65.84 E-value=3 Score=38.19 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=17.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
++.+.|+.|+||||+.-.++-.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 44555999999999988776543
No 493
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=65.84 E-value=3.4 Score=35.20 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=14.7
Q ss_pred EEEcCCCCCcHHHHHHHHH
Q 016417 92 YMLGGKGGVGKTSCAASLA 110 (390)
Q Consensus 92 ~~~~gkgGvGKtt~a~~la 110 (390)
+++.|..||||||+.-.+.
T Consensus 17 i~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3444999999999976654
No 494
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=65.81 E-value=4.4 Score=36.93 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++++|++|-+|.|+. +|..|+++|.+|.++|-+.
T Consensus 13 gk~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 47 (278)
T 3sx2_A 13 GKVAFITGAARGQGRA-----HAVRLAADGADIIAVDLCD 47 (278)
T ss_dssp TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEECCS
T ss_pred CCEEEEECCCChHHHH-----HHHHHHHCCCeEEEEeccc
Confidence 5789999999999975 6778899999999998763
No 495
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=65.80 E-value=3.7 Score=36.54 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++++|++|-||.|+. +|..|+++|.+|.+++-+.
T Consensus 14 ~k~vlITGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 48 (247)
T 3i1j_A 14 GRVILVTGAARGIGAA-----AARAYAAHGASVVLLGRTE 48 (247)
T ss_dssp TCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCChHHHH-----HHHHHHHCCCEEEEEecCH
Confidence 5789999999999985 6778899999999998753
No 496
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=65.69 E-value=4.1 Score=36.60 Aligned_cols=35 Identities=23% Similarity=0.515 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~ 127 (390)
+++++|++|-+|.|+ ++|..|+++|.+|.++|-+.
T Consensus 6 gk~vlVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 40 (247)
T 3rwb_A 6 GKTALVTGAAQGIGK-----AIAARLAADGATVIVSDINA 40 (247)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 578999999999887 47788899999999987653
No 497
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=65.68 E-value=3.6 Score=34.16 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=25.6
Q ss_pred ceEEEEeCCC-cchHHHHHHHHHHHHhCCC--CcceEEEcCcc
Q 016417 291 TEFVIVTIPT-VMAVSESSRLSESLKKENV--PVKRLIVNQII 330 (390)
Q Consensus 291 t~~~lVt~Pe-~~s~~ea~r~~~~L~~~gi--~v~gvVvN~v~ 330 (390)
+.+++|.... ..++.+..+.+..+..... ...-+|.|+.=
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 128 (181)
T 2efe_B 86 AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSD 128 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCc
Confidence 4667776654 5566777777777776532 12467889963
No 498
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=65.61 E-value=3.1 Score=38.78 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=17.2
Q ss_pred EEEEcCCCCCcHHHHHHHHHHH
Q 016417 91 YYMLGGKGGVGKTSCAASLAVK 112 (390)
Q Consensus 91 ~~~~~gkgGvGKtt~a~~la~~ 112 (390)
++.+.|..|+||||+.-.++-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4445599999999998877653
No 499
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=65.55 E-value=3.1 Score=38.55 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Q 016417 90 KYYMLGGKGGVGKTSCAASLAVKF 113 (390)
Q Consensus 90 ~~~~~~gkgGvGKtt~a~~la~~~ 113 (390)
.++.+.|+.|+||||+.-.++-.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 345555999999999998876544
No 500
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=65.36 E-value=5.1 Score=35.94 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCCcHHHHHHHHHHHHHHCCCCeEEEecCCC
Q 016417 88 QRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128 (390)
Q Consensus 88 ~~~~~~~~gkgGvGKtt~a~~la~~~a~~g~~vll~d~D~~ 128 (390)
+++++|++|-||.|+. ++..|+++|.+|.+++-++.
T Consensus 7 ~k~vlVTGas~giG~~-----ia~~l~~~G~~V~~~~r~~~ 42 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYA-----TALAFVEAGAKVTGFDQAFT 42 (250)
T ss_dssp TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCCC
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCchh
Confidence 4689999999999985 67788999999999987653
Done!