RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016417
(390 letters)
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 276 bits (707), Expect = 5e-91
Identities = 89/332 (26%), Positives = 157/332 (47%), Gaps = 27/332 (8%)
Query: 72 APSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSL 131
+ + ++ T K+ +GGKGGVGKT+ + SLA++ + L++STDPAH+L
Sbjct: 2 SFDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNL 61
Query: 132 SDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFR-NVTQKDGGTGVKDFMDGMGLG 190
SD+F G V G D L A+EI+P + +E Q++ + M +
Sbjct: 62 SDAFGTKF-GKDARKVPGFD-NLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFT 119
Query: 191 M--LVEQLGELKLGELL----------DTPPPGLDEAIAISKGHTLRLLSLPDFLDASIG 238
+ + E L ++ + + DT P GHTLR L+ P L+ ++G
Sbjct: 120 IPGIDEALAFAEILKQIKSMEFDCVIFDTAP----------TGHTLRFLNFPTVLEKALG 169
Query: 239 KILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTI 298
K+ L + + + S+ G N Q K+E +R + +V + F++ D T FV V I
Sbjct: 170 KLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCI 229
Query: 299 PTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDS 358
+++ E+ R+ + L + ++VNQ++ + C C +RK Q + L I +
Sbjct: 230 SEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQI--EE 287
Query: 359 ELSSLMLIEAPLVDVEIRGVPALRFMGDIIWK 390
+++ P V E+RG AL+ +++ K
Sbjct: 288 LYEDFHVVKVPQVPAEVRGTEALKSFSEMLVK 319
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 260 bits (665), Expect = 8e-85
Identities = 109/327 (33%), Positives = 175/327 (53%), Gaps = 42/327 (12%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVP 146
+ + +GGKGGVGKT+ +A+ A+ A +G TLV+STDPAHSLSDS +++ G
Sbjct: 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREI-GHTPTK 70
Query: 147 VEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLD 206
+ L+A+EI+PE A EE++ Q+ GMGL ML +Q+
Sbjct: 71 ITE---NLYAVEIDPEVAMEEYQAKLQEQAA-----MNPGMGLDMLQDQMDMA------- 115
Query: 207 TPPPGLDEAIAISK--------------------GHTLRLLSLPDFLDASIGKILKLREK 246
+ PG+DEA A + GHTLRLLS P+ +D+ +GK++K+R +
Sbjct: 116 SMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIKIRRQ 175
Query: 247 IASATSAIKSVF---GQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 303
I S A K++ G E+ A +E ++++ RE+ D + T F +V IP M+
Sbjct: 176 IGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMS 235
Query: 304 VSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSL 363
+ ES R ++L+K ++ +IVNQ++P SDC+FC +RK Q L+ I + S
Sbjct: 236 IYESERAMKALEKYSIHADGVIVNQVLPE-ESDCEFCNARRKLQQERLKQI--REKFSDK 292
Query: 364 MLIEAPLVDVEIRGVPALRFMGDIIWK 390
++ E PL+ E +G+ L + + ++
Sbjct: 293 VVAEVPLLKKEAKGIETLEKIAEQLYG 319
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 259 bits (662), Expect = 5e-84
Identities = 92/342 (26%), Positives = 149/342 (43%), Gaps = 45/342 (13%)
Query: 80 FDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFA--NNGHPTLVVSTDPAHSLSDSFAQ 137
++ T K+ +GGKGGVGKT+ + S+A++ A L++STDPAH+LSD+F +
Sbjct: 9 LHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGE 68
Query: 138 DLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLG 197
G V G + L +EI+P A ++ ++ D G G + L
Sbjct: 69 KF-GKDARKVTGMN-NLSCMEIDPSAALKDMNDMAVSRANNNGSD-----GQGDDLGSLL 121
Query: 198 ELKLGELLDTPPPGLDEAIAISK--------------------------GHTLRLLSLPD 231
+ L PG+DEA++ + GHTLR L LP+
Sbjct: 122 QGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPN 181
Query: 232 FLDASIGKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDST 291
L + K ++ K+ ++ + S KL L+ + +R+ F D D T
Sbjct: 182 TLSKLLEKFGEITNKLGPMLNSFMGAGNVD-----ISGKLNELKANVETIRQQFTDPDLT 236
Query: 292 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASD---CKFCAMKRKDQM 348
FV V I +++ E+ RL + L ++ V +IVNQ++ CK C + K Q
Sbjct: 237 TFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQK 296
Query: 349 RALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDIIWK 390
+ L+ I D +++ PL EIRG+ L + K
Sbjct: 297 KYLDQI--DELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNK 336
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 257 bits (659), Expect = 8e-84
Identities = 92/328 (28%), Positives = 158/328 (48%), Gaps = 31/328 (9%)
Query: 81 DEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140
++ ++ +GGKGGVGKT+ + SLA++ A L++STDPAH+LSD+F+Q
Sbjct: 8 QSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKF- 66
Query: 141 GGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKD---------FMDGMGLGM 191
G + VEG D L+A+EI+P + ++ DG G+ + G+ M
Sbjct: 67 GKEARLVEGFD-NLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAM 125
Query: 192 LVEQLGELKLGE-----LLDTPPPGLDEAIAISKGHTLRLLSLPDFLDASIGKILKLREK 246
++ + + DT P GHTLR L P L+ ++ K+ +L +
Sbjct: 126 SFAEVLKQVNSLSYETIVFDTAPT----------GHTLRFLQFPTVLEKALAKVSQLSGQ 175
Query: 247 IASATSAIKSVFGQ---EQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMA 303
S + I G Q +KL+ LR + +V F+D T FV V IP ++
Sbjct: 176 YGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLS 235
Query: 304 VSESSRLSESLKKENVPVKRLIVNQIIPP-SASDCKFCAMKRKDQMRALEMIKSDSELSS 362
+ E+ R+ + L + ++VNQ++ P SDC+ C +R+ Q + L+ I+ +
Sbjct: 236 LYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIE-ELYDEE 294
Query: 363 LMLIEAPLVDVEIRGVPALRFMGDIIWK 390
+++ PL+ E+RG L +++ K
Sbjct: 295 FNVVKMPLLVEEVRGKERLEKFSEMLIK 322
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 255 bits (652), Expect = 1e-82
Identities = 90/334 (26%), Positives = 150/334 (44%), Gaps = 32/334 (9%)
Query: 79 GFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKF--ANNGHPTLVVSTDPAHSLSDSFA 136
+ +V K+ +GGKGGVGKT+ ++S+AV+ A L++STDPAH+LSD+F
Sbjct: 8 TLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFC 67
Query: 137 QDLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGL------G 190
Q G VEG L +EI+PE A + + + M G
Sbjct: 68 QKF-GKDARKVEGLP-NLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPG 125
Query: 191 MLVEQLGELKLGELLDTPPPGLDEAIAISK------------GHTLRLLSLPDFLDASIG 238
+ E L +++ + + E + + GHTLR L LP L+ +
Sbjct: 126 I-DEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLS 184
Query: 239 KILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTI 298
K L K+ S + Q+ +KL +++ + +V E F + + T F+ V I
Sbjct: 185 KFKDLSGKLGPMLSMMGGGQQQD-----IFEKLNEVQKNVSEVNEQFTNPELTTFICVCI 239
Query: 299 PTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASD--CKFCAMKRKDQMRALEMIKS 356
+++ E+ R+ + L N+ V ++VNQ++ D CK C + K Q + L+ +
Sbjct: 240 SEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQM-- 297
Query: 357 DSELSSLMLIEAPLVDVEIRGVPALRFMGDIIWK 390
L++ PL+ EIRGV L+ + K
Sbjct: 298 GELYEDYHLVKMPLLGCEIRGVENLKKFSKFLLK 331
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 252 bits (646), Expect = 1e-81
Identities = 102/335 (30%), Positives = 171/335 (51%), Gaps = 43/335 (12%)
Query: 81 DEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLT 140
++ KY M GGKGGVGKT+ +A+ V A G ++VSTDPAHSL D F Q+
Sbjct: 18 KKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEF- 76
Query: 141 GGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELK 200
G + V+G D L+ +EI+P+KA EE++ + LG ++E E
Sbjct: 77 GHEPTKVKGYD-NLYVVEIDPQKAMEEYK-------EKLKAQIEENPFLGEMLEDQLE-- 126
Query: 201 LGELLDTPPPGLDEAIAISK--------------------GHTLRLLSLPDFLDASIGKI 240
+ PG DE+ A GHTLR L +P+ +D + K+
Sbjct: 127 ----MAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKL 182
Query: 241 LKLREKIASATSAIKSVFG-----QEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVI 295
+KLR++++ +K + ++ + ++LE+++ER+V+ R + D + T F +
Sbjct: 183 IKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRL 242
Query: 296 VTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIK 355
V IP M++ ES R ++L+K +P+ +IVNQ+IP C FC +R+ Q++ LEMI
Sbjct: 243 VVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDV-QCDFCRARRELQLKRLEMI- 300
Query: 356 SDSELSSLMLIEAPLVDVEIRGVPALRFMGDIIWK 390
+ ++ PL+ E +G+ L+ + I++
Sbjct: 301 -KEKFGDKVIAYVPLLRTEAKGIETLKQIAKILYG 334
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 238 bits (608), Expect = 3e-73
Identities = 75/322 (23%), Positives = 123/322 (38%), Gaps = 50/322 (15%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVP 146
Y GKGGVGKTS + + A++ A G L+VSTDPA ++ F+Q + G +
Sbjct: 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTI-GNTIQA 64
Query: 147 VEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLD 206
+ L ALEI+P+ A +++R +K + + + EQL E+
Sbjct: 65 IASVP-GLSALEIDPQAAAQQYR----ARIVDPIKGVLPDDVVSSINEQLSGACTTEI-- 117
Query: 207 TPPPGLDEAIAISK------------------GHTLRLLSLPDFLDASIGKILKLREKIA 248
DE + GHT+RLL LP + I + +
Sbjct: 118 ---AAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCL- 173
Query: 249 SATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVSESS 308
G LE+ RE+ E D T V+V + E +
Sbjct: 174 -----------------GPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVA 216
Query: 309 RLSESLKKENVPVKRLIVNQIIPPS-ASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIE 367
R L + + L++N ++P + A++ A + + AL + ++L+ L
Sbjct: 217 RTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANL--PADLAGLPTDT 274
Query: 368 APLVDVEIRGVPALRFMGDIIW 389
L V + GV AL +
Sbjct: 275 LFLQPVNMVGVSALSRLLSTQP 296
Score = 207 bits (528), Expect = 1e-61
Identities = 64/329 (19%), Positives = 112/329 (34%), Gaps = 81/329 (24%)
Query: 78 SGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQ 137
S + +A + ML GKGGVGKT+ AA++AV+ A+ G + ++DPA LS +
Sbjct: 316 SALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNG 375
Query: 138 DLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLG 197
L L I+P + E +R + G +D G +L E
Sbjct: 376 SLNN------------LQVSRIDPHEETERYRQHVLETKG----KELDEAGKRLLEE--- 416
Query: 198 ELKLGELLDTPPPGLDEAIAISK--------------------GHTLRLLSLPDFLDASI 237
D P +E GHTL LL I
Sbjct: 417 --------DLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREI 468
Query: 238 GKILKLREKIASATSAIKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVT 297
K + L +D + T+ ++VT
Sbjct: 469 A-------------------------------KKMGEKGHFTTPMMLLQDPERTKVLLVT 497
Query: 298 IPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSD 357
+P V E++ L L++ + I+N + + + M+ + ++ +E +K
Sbjct: 498 LPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVK-- 555
Query: 358 SELSSLMLIEAPLVDVEIRGVPALRFMGD 386
+ + P++ E G+ L+ +
Sbjct: 556 -RQHASRVALVPVLASEPTGIDKLKQLAG 583
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 176 bits (447), Expect = 9e-52
Identities = 45/281 (16%), Positives = 82/281 (29%), Gaps = 49/281 (17%)
Query: 89 RKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS-TDPAHSLSDSFAQDLTGGQLVPV 147
GK GV +T A + A A+ G L+ +P Q L +
Sbjct: 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPVLP--LLLEQTL-TPDPQQI 58
Query: 148 EGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGELLDT 207
L ++ E VK +++++ +L L
Sbjct: 59 APN---LEVVQFQSSVLLERNWE--------EVKKLEAQYLRTPIIKEVYGQELVVL--- 104
Query: 208 PPPGLDEAIAISK--------------------GHTLRLLSLPDFLDASIGKILKLREKI 247
PG+D A+A++ TLR+L LP+ L + + +L
Sbjct: 105 --PGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQLFVNS 162
Query: 248 ASATSA---------IKSVFGQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTI 298
+ I S F + ++ + K +E D +VT
Sbjct: 163 DLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTT 222
Query: 299 PTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKF 339
+ V L S ++ + + +I +F
Sbjct: 223 ADPLEVVSVRYLWGSAQQIGLTIGGVIQVSSQTEGDLSAEF 263
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.7 bits (185), Expect = 6e-15
Identities = 58/396 (14%), Positives = 104/396 (26%), Gaps = 142/396 (35%)
Query: 90 KYYMLGGKGGVGKTSCAASLA---------------VKFANNGHPTLVVSTDPAHSLSDS 134
K ++ G G GKT A + + N P V+ + L
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQ 208
Query: 135 FAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRN-VTQKDGGTG------VKD--FMD 185
+ T D +++ + E R + K V++ +
Sbjct: 209 IDPNWT-------SRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 186 GMGLG--MLV--------EQLGELKLGEL-LDTPPPGLDEAIAISKGHTLRLLSLPDFLD 234
L +L+ + L + LD L LL +LD
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD------EVKSLLLK--YLD 312
Query: 235 ASIGKILKLREKIASATS--AIKSVFGQE--------QN-RQGASDKLERLRERMVKV-- 281
L + T+ + S+ + N + DKL + E + V
Sbjct: 313 CRPQ---DLPRE-VLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 282 ----RELFRDTDSTEFVI----VTIPT-VMA--------------VSESSRLS------- 311
R++F + IPT +++ V++ + S
Sbjct: 368 PAEYRKMFDR-----LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 312 ------------ESLKKENVPVK-RLIVNQIIPPSASDCKFCAMKRKDQ---------MR 349
+K EN R IV+ P D DQ ++
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 350 ALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMG 385
+E + + + L D RF+
Sbjct: 483 NIEHPERMTLFRMVFL------D--------FRFLE 504
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 51.2 bits (123), Expect = 7e-08
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPD 151
KGG GKT+ ++A + +G+ VV TDP SL++ +
Sbjct: 10 KGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEK 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 69/413 (16%), Positives = 110/413 (26%), Gaps = 166/413 (40%)
Query: 8 FRSTSLPSSFSIHKKLAVKRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQV 67
F + L + IH + A LL + T + LI KN
Sbjct: 91 FENCYLEGN-DIH--------ALAAK---LLQENDTTLVKTKELI---------KNYITA 129
Query: 68 RAVAA---PSEAVSG-FDEMVAGTQRKYYMLGGKGGVG----------KTSCAASLAVKF 113
R +A ++ S F + G + + GG+G +T L
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY--HVLVGDL 187
Query: 114 ANNGHPTLVVSTDPAHSLSDSFAQ--D----LTGGQLVPVEGPD----------FPL--- 154
TL F Q + L P PD PL
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN----PSNTPDKDYLLSIPISCPLIGV 243
Query: 155 --FA--------LEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGMLVEQLGELKLGEL 204
A L P + R + G TG G++
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLK------GATGH-------SQGLVT----------- 279
Query: 205 LDTPPPGLDEAIAISKGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVF-----G 259
A+AI++ S F + AI +F
Sbjct: 280 ----------AVAIAETD-----SWESFFVS--------------VRKAITVLFFIGVRC 310
Query: 260 QEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVM-AVSESSR--LSESLKK 316
E + L +++ DS E +P+ M ++S ++ + + + K
Sbjct: 311 YEAYPNTS------LPPSILE--------DSLE-NNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 317 EN--VPVKRLI----VN---QII---PPSASDCKFCAMKRK-------DQMRA 350
N +P + + VN ++ PP S RK DQ R
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPP-QSLYGLNLTLRKAKAPSGLDQSRI 407
Score = 47.0 bits (111), Expect = 9e-06
Identities = 45/255 (17%), Positives = 82/255 (32%), Gaps = 83/255 (32%)
Query: 120 TLVVSTD---PAHSLSDSFAQDLTGGQLVPVEGPDFPLFALEINPEKARE---EFRNVTQ 173
L+V T A L + F + L P EG FA + P E +F
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILP----EPTEG-----FAADDEPTTPAELVGKF----- 64
Query: 174 KDGGTGVKDFMDGMGLGMLVEQLGELKLG---ELLDTPPPGLDEA-IAISKG---HTLRL 226
LG + + K+G ++L+ L E +G H L
Sbjct: 65 ---------------LGYVSSLVEPSKVGQFDQVLNL---CLTEFENCYLEGNDIHAL-A 105
Query: 227 LSLPDFLDASIGKILKL------------REKIASATSA-----------IKSVFGQEQN 263
L D ++ K +L R + SA + ++FG
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--- 162
Query: 264 RQGASDKLERLRERMVKVRELFRDTDST---EFVIVTIPTVMAVSESSRLSESLKKENVP 320
QG +D + E +R+L+ T + + + T+ + ++ +E + + +
Sbjct: 163 -QGNTD--DYFEE----LRDLY-QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 321 VKRLIVNQIIPPSAS 335
+ + N P
Sbjct: 215 ILEWLENPSNTPDKD 229
Score = 42.7 bits (100), Expect = 2e-04
Identities = 47/293 (16%), Positives = 75/293 (25%), Gaps = 120/293 (40%)
Query: 3 TAACCFRSTSLPSSFSIHKKLAVKRNSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSK 62
TA + S S F + + +L F G+ R
Sbjct: 279 TAVAIAETDSWES-F----------FVSVRKAITVL--------FFIGV--------RCY 311
Query: 63 NSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKG--------GVGKTSC------AAS 108
++ ++ P + E G ML V KT+
Sbjct: 312 EAYPNTSL--PPSILEDSLENNEGVPS--PMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 109 LAVKFANNGHPTLVVS-------------------------------------------T 125
+++ NG LVVS
Sbjct: 368 ISLV---NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 126 DPAHS--LSDS---FAQDLTGGQL--------VPV----EGPDFPLFALEINPEKAREEF 168
P HS L + +DL + +PV +G D + + I+
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 169 RN-----VTQKDGGTGVKDFMDG--MGLGMLVEQLGELK-----LGELLDTPP 209
R T + T + DF G GLG+L + + + LD P
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 36.6 bits (84), Expect = 0.015
Identities = 45/298 (15%), Positives = 86/298 (28%), Gaps = 95/298 (31%)
Query: 86 GTQRKYYMLGGKGGVGKTSCAASLAVK----------FANNGHPTL-VVSTDPAHSLSDS 134
G+Q + G+G S A + G L +V +P +L+
Sbjct: 1625 GSQEQ--------GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-NLTIH 1675
Query: 135 FAQDLTGGQ--------LVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMD- 185
F G+ ++ D L +I E E + T + K +
Sbjct: 1676 F--GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE-INEHSTSYTFR----SEKGLLSA 1728
Query: 186 ------GMGLGMLVE--QLGELKLGELLDTPPPGLDEAIAISKGHTL----------RLL 227
+ L+E +LK L+ D A GH+L ++
Sbjct: 1729 TQFTQPAL---TLMEKAAFEDLKSKGLIP-----ADATFA---GHSLGEYAALASLADVM 1777
Query: 228 SLPDFLDASIGKILKLREKIASATSAIKSVFGQEQ--------NRQGASDKLERLRERMV 279
S+ + +++ R + + G+ R AS E L+
Sbjct: 1778 SIESLV-----EVVFYRGM-TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV-- 1829
Query: 280 KVRELFRDTDSTEFV-----------IVTIPTVMAVSESSRLSESLKKENVPVKRLIV 326
V + + T V V + A+ + + +K + + + L
Sbjct: 1830 -VERVGKRTG--WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQK 1884
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 50.5 bits (121), Expect = 3e-07
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSL 131
GKGGVGKT+ AA L A++ V DP L
Sbjct: 7 GKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCL 42
Score = 32.8 bits (75), Expect = 0.16
Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 3/91 (3%)
Query: 292 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRAL 351
+ V P + ++ + + + R ++N++ K + + L
Sbjct: 156 MMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIKEEK---LIKKHLPEDKIL 212
Query: 352 EMIKSDSELSSLMLIEAPLVDVEIRGVPALR 382
+I + L L + L
Sbjct: 213 GIIPYNELFIELSLKGEEIWQSTNPAFVNLH 243
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 46.8 bits (111), Expect = 6e-06
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
GGVG ++ AA+ A+ AN G ++ +
Sbjct: 151 PCGGVGTSTVAAACAIAHANMGKKVFYLNIEQ 182
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 42.8 bits (101), Expect = 6e-05
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVE 148
KGGVGKT+ A L+ A G TL++ DP S + + ++V
Sbjct: 9 KGGVGKTTTAVHLSAYLALQGE-TLLIDGDPNRSATGWGKRGSLPFKVVDER 59
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 42.5 bits (101), Expect = 9e-05
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
GKGG GKT+ A+L+V + G L V D
Sbjct: 10 GKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 42.6 bits (101), Expect = 9e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
GKGGVGKT+ +A++A A G T+V+
Sbjct: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFA 40
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 42.6 bits (101), Expect = 1e-04
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
GKGG GKT+ A+L V A GH +V D
Sbjct: 10 GKGGTGKTTITANLGVALAQLGHDVTIVDAD 40
Score = 27.5 bits (62), Expect = 6.2
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 292 EFVIVTIPTVMAVSESSRLSESLKKENVPVKRLIVNQIIP 331
E ++V P + ++++ + ++ V ++VN+I
Sbjct: 135 ELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITT 174
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Length = 361
Score = 40.2 bits (94), Expect = 9e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
KGGVGKT+ + ++A FA G L V DP
Sbjct: 10 KGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 39.4 bits (93), Expect = 0.001
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
KGGVGKT+ A +LA A G L+V DP
Sbjct: 15 KGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter
vibrioides} PDB: 2xj9_A* 2xit_A
Length = 286
Score = 38.6 bits (90), Expect = 0.002
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
KGG GK++ A L G V+ D
Sbjct: 13 KGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 38.0 bits (89), Expect = 0.003
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 95 GGKGGVGKTSCAASLAVKFANNGHP-TLVVSTD 126
KGG G + AA+ A + L V
Sbjct: 11 SAKGGDGGSCIAANFAFALSQEPDIHVLAVDIS 43
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 37.2 bits (87), Expect = 0.006
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTDP 127
KGGVGK+ + A L++ D
Sbjct: 45 KGGVGKSKLSTMFAYLTDKLNLKVLMIDKDL 75
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 36.4 bits (85), Expect = 0.011
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 96 GKGGVGKTSCAASLAVKFANNGH 118
GKGGVGK++ A LAV +A G
Sbjct: 26 GKGGVGKSTVTALLAVHYARQGK 48
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 36.1 bits (83), Expect = 0.017
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 39 SFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAG--TQRKYYMLGG 96
S F+ I++ + Q + S V DEM G + + G
Sbjct: 229 SHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATG 288
Query: 97 KGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
G GKT + N ++ + +
Sbjct: 289 ATGTGKTLLVSRFVENACANKERAILFAYE 318
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 35.1 bits (81), Expect = 0.035
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 97 KGGVGKTSCAASLA------VKFANNGHPTLVVSTDPAHSLS 132
KGGV KT SLA LV+ DP S +
Sbjct: 117 KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSAT 158
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 35.1 bits (81), Expect = 0.039
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 97 KGGVGKT----SCAASLAV--KFANNGHPTLVVSTDPAHSLS 132
KGGV KT + A +L V + LV+ DP S +
Sbjct: 120 KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASST 161
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 34.3 bits (79), Expect = 0.043
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
+ G DE++ G +R +L G G GKT + G P + V+ +
Sbjct: 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 34.1 bits (79), Expect = 0.056
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVVSTD 126
G GK++ AA+LAV +A G+ TL+V D
Sbjct: 93 GAGKSTIAANLAVAYAQAGYKTLIVDGD 120
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 33.8 bits (78), Expect = 0.059
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
+ FD+++ G Q + L G+ G GKT + K +G P + V+T+
Sbjct: 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium
pasteurianum} SCOP: c.37.1.10
Length = 269
Score = 33.8 bits (78), Expect = 0.061
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134
GKGG+GK++ +L G +VV DP DS
Sbjct: 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA---DS 43
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur,
metal-binding, molybdenum, oxidoreductase; HET: HCA CFN
CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii}
SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E*
1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A
1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A*
1rw4_A
Length = 289
Score = 33.8 bits (78), Expect = 0.072
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134
GKGG+GK++ +L A G ++V DP DS
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA---DS 44
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 33.8 bits (78), Expect = 0.075
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVVSTD 126
GKT +++LA A + L + D
Sbjct: 115 DSGKTFVSSTLAAVIAQSDQKVLFIDAD 142
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 33.4 bits (77), Expect = 0.096
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVVSTD 126
+G T A+LA + L++ D
Sbjct: 103 SIGMTFVCANLAAVISQTNKRVLLIDCD 130
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 33.2 bits (76), Expect = 0.10
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDS 134
GKGG+GK++ +++L+ F+ G L + DP H DS
Sbjct: 48 GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH---DS 83
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid,
borellia burgdorferi, plasmid partition protein, iodide;
2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 33.0 bits (76), Expect = 0.14
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Query: 97 KGGVGK-TSC---AASLAVKFANNGHPTLVVSTDP 127
KGGVGK TS A L+ + L++ D
Sbjct: 36 KGGVGKSTSAIILATLLSK-----NNKVLLIDMDT 65
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 32.0 bits (73), Expect = 0.23
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 43 KTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGK 102
++ ++ SL + +++A+ V+ ++ + K L G GVGK
Sbjct: 11 QSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPG---KKMKGLYLHGSFGVGK 67
Query: 103 TSCAASLAVKFANNGHPTLVVST 125
T A++A + A +L+V
Sbjct: 68 TYLLAAIANELAKRNVSSLIVYV 90
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 32.1 bits (74), Expect = 0.29
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
ML G G GKT+ A LA + G +V D PA
Sbjct: 102 MLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA 140
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 31.7 bits (71), Expect = 0.29
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 12/126 (9%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDP--AHSLSDSFAQDLTGGQLVPVEGP 150
+LGG G +GK LA++ A GH +V S A + + + + + ++
Sbjct: 5 LLGGTGNLGKG-----LALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNE 59
Query: 151 D----FPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGML-VEQLGELKLGELL 205
D + L I E A + R++ V + + G E E++
Sbjct: 60 DAAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIV 119
Query: 206 DTPPPG 211
Sbjct: 120 AEVLES 125
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 31.8 bits (72), Expect = 0.29
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 77 VSGFDEMVAG--TQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTD 126
+ GFDE++ G + +L G G GKT+ AA K A G P + V+ +
Sbjct: 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.46
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 239 KILKLREK----IAS--ATSAIKSVFGQEQNRQGASDKLE----RLRERMVKVRELFRDT 288
I K RE+ + A S + +++ R+ A LE R E++ K + R
Sbjct: 86 SIRKWREEQRKRLQELDAASKVM----EQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Query: 289 DSTEFV 294
D F
Sbjct: 142 DK-AFY 146
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 31.3 bits (72), Expect = 0.48
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
L G G GKT+ AA LA+ + G L+V+ D PA
Sbjct: 102 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 31.4 bits (72), Expect = 0.51
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
+L G G GKT+ AA LA G +++ D PA
Sbjct: 103 LLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 30.8 bits (70), Expect = 0.55
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
L G G GK++ + LA + G P VV D
Sbjct: 27 LSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 31.4 bits (72), Expect = 0.57
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
ML G G GKT+ A LA + G+ +V+ D PA
Sbjct: 101 MLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPA 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 31.0 bits (71), Expect = 0.70
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
++ G G GKT+ A LA F G+ VV +D P
Sbjct: 104 LMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG 142
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 30.7 bits (70), Expect = 0.79
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
M G G GKT+ + LA + G T ++ D
Sbjct: 105 MFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 30.6 bits (70), Expect = 0.89
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 93 MLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD---PA 128
L G G GKT+ AA LA+ + G L+V+ D PA
Sbjct: 102 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein,
pseudomonas syringae P STR. DC3000, structural genomics,
PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Length = 176
Score = 29.0 bits (65), Expect = 1.6
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 192 LVEQLGELKLGELLDTP-PPGLDEAIAISKGHTL-----RLLSLPDFLDASIGKILKLRE 245
L E+L LK L P L +A+A + HT R + IGK+++ +
Sbjct: 31 LGERLTTLKADVLAKLPLTDALRKALAEAPKHTANIARKRHILF-------IGKLMR-DQ 82
Query: 246 KIASATSAIKSVFGQEQNRQGASDKLERLRERMV 279
+ + + + LER R+R++
Sbjct: 83 DQEAILVLLDQLDASTRQYNERFHNLERWRDRLI 116
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 28.9 bits (64), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLS 132
G G VG+T +A A+ GH + + DP +L+
Sbjct: 26 GTGTVGRT-----MAGALADLGHEVTIGTRDPKATLA 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 28.7 bits (65), Expect = 3.2
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 212 LDEAIAISKGHTLRLLSLPDFLDASIGKILKLREKIASATSAIKSVFGQEQNRQGAS--- 268
+DEA + + LR + P L K+ ++R++ +A Q Q + A+
Sbjct: 378 IDEAGSKVR---LRSFTTPPNLKELEQKLDEVRKEKDAAV--------QSQEFEKAASLR 426
Query: 269 DKLERLRERMVKVRELFRDTDSTEFVIVT 297
D +RLRE++ ++ +++ E VT
Sbjct: 427 DTEQRLREQVEDTKKSWKEKQGQENSEVT 455
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 28.7 bits (64), Expect = 3.3
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 43 KTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGK 102
+ S I L N+ ++ A +A + V + ++K L G G+GK
Sbjct: 110 QLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSA----EQKGLYLYGDMGIGK 165
Query: 103 TSCAASLAVKFA-NNGHPTLVVST 125
+ A++A + + G T ++
Sbjct: 166 SYLLAAMAHELSEKKGVSTTLLHF 189
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 27.7 bits (61), Expect = 4.7
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
M +L G G GK++ A +LA G P + +D
Sbjct: 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSD 43
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 27.5 bits (62), Expect = 4.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
T+ K ++G GGVGK+ +L ++ N
Sbjct: 2 TEYKLVVVGA-GGVGKS----ALTIQLIQN 26
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 27.6 bits (62), Expect = 5.0
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 69 AVAAPSEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
+ F M + K + G GVGK+ +L V+F
Sbjct: 9 SGVDLGTENLYFQSMAKSAEVKLAIFGR-AGVGKS----ALVVRFLTK 51
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 28.1 bits (63), Expect = 5.5
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 74 SEAVSGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFA-NNGHPTLVVSTD 126
+ + D+ KY +L G G GKT+ A LA ++TD
Sbjct: 90 CDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 27.4 bits (60), Expect = 6.4
Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 21/156 (13%)
Query: 90 KYYMLGGKGGVGKTSCAASLAVKFANNGHP------------------TLVVSTDPAHSL 131
++ L G GVGKT+ + ++G P +V + L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 132 SDSFAQDLTGGQLVPVEGPDFPLFALEINPEKAREEFRNVTQKDGGTGVKDFMDGMGLGM 191
S + G + V L + E + A RN G +D +G
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFE---QLALPVLRNADCSSGPGQRVCVIDEIGKME 118
Query: 192 LVEQLGELKLGELLDTPPPGLDEAIAISKGHTLRLL 227
L QL + + L TP + I + KG L L+
Sbjct: 119 LFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALV 154
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 27.1 bits (61), Expect = 6.5
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
+ K +LG GGVGK+ +L V+F
Sbjct: 2 REYKLVVLGS-GGVGKS----ALTVQFVQG 26
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 27.3 bits (60), Expect = 6.8
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPA 128
+ G G GK+ L +K G+ + S +P
Sbjct: 24 IFGTGDFGKS-----LGLKMLQCGYSVVFGSRNPQ 53
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.3 bits (61), Expect = 6.8
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVSTD 126
G GKT+ A L+ G V D
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMD 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 27.1 bits (61), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 87 TQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
+ K +LG GGVGK+ +L V+F
Sbjct: 2 REYKVVVLGS-GGVGKS----ALTVQFVTG 26
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 27.5 bits (61), Expect = 6.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 99 GVGKTSCAASLAVKFANNGHPTLVVSTD 126
GVGK++ + +LA + N +V+ +D
Sbjct: 14 GVGKSTFSKNLAKILSKNNIDVIVLGSD 41
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.2 bits (61), Expect = 7.1
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 78 SGFDEMVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
F M RK +LG VGKT SLA +F
Sbjct: 14 LYFQGMPLVRYRKVVILGY-RCVGKT----SLAHQFVEG 47
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 27.8 bits (61), Expect = 7.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 92 YMLGGKGGVGKTSCAASLAVKFAN 115
L GG GK+ A LA + A
Sbjct: 33 GALVSPGGAGKSMLALQLAAQIAG 56
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 27.1 bits (61), Expect = 7.2
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 83 MVAGTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
M RK +LG VGK+ SL ++F
Sbjct: 1 MPQSKSRKIAILGY-RSVGKS----SLTIQFVEG 29
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 27.7 bits (61), Expect = 7.6
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 12/63 (19%)
Query: 94 LGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGQLVPVEGPDFP 153
LG G G A A G L D +++ + EGP
Sbjct: 10 LGL-GNGGHA-----FAAYLALKGQSVLAWDIDAQR------IKEIQDRGAIIAEGPGLA 57
Query: 154 LFA 156
A
Sbjct: 58 GTA 60
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 27.2 bits (61), Expect = 8.5
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 85 AGTQRKYYMLGGKGGVGKTSCAASLAVKFANN 116
T+ K ++G GVGK+ +L ++ N
Sbjct: 1 GSTEYKLVVVGA-DGVGKS----ALTIQLIQN 27
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A
{Bacillus phage SPP1}
Length = 315
Score = 27.5 bits (62), Expect = 8.6
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 78 SGF---DEMVAGTQRK-YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124
SGF D M G +R+ + ++ + +GKT+ A A ++N + S
Sbjct: 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 27.1 bits (60), Expect = 8.8
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 96 GKGGVGKTSCAASLAVKFANNGHPTLVVST 125
G G VGKT L + +AN+ P V T
Sbjct: 25 GDGAVGKT----CLLMSYANDAFPEEYVPT 50
>2pt1_A Iron transport protein; C-clamp, iron-binding protein,
solute-binding protein, perip binding protein, ABC
transporter, metal transport; 2.00A {Synechocystis SP}
PDB: 2pt2_A 3f11_A
Length = 334
Score = 27.4 bits (61), Expect = 8.8
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 28 NSNAVSFMGLLSFSPKTSSFSTGLISISLKQRRSKNSFQVRAVAAPSEAVSGFDEMVAGT 87
N + V+ + + T +++ G +S ++ + ++ Q+ AV++ E
Sbjct: 160 NQSLVASLVVADGEESTLAWAKGFVSNFAREPQGNDTAQIEAVSS--------GEADLTL 211
Query: 88 QRKYY---MLGGKGGVGKTSCAASLAVKFANNG 117
YY +L + + + A ++ V F N
Sbjct: 212 ANTYYMGRLLESEDP-AQKAIAENVGVFFPNQE 243
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 27.1 bits (61), Expect = 9.7
Identities = 5/52 (9%), Positives = 12/52 (23%), Gaps = 10/52 (19%)
Query: 199 LKLGELLDTPPPGLDEAI-AISKGHTLRLLSLPDFLDASIGKILKLREKIAS 249
L L EL ++ + I ++ ++
Sbjct: 32 LTLEELFALSGTNPEDFYKKLQGTKL---------NYGWIEGSPAFKKSVSQ 74
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA
replication, ATPase; HET: FLC; 2.50A {Helicobacter
pylori}
Length = 338
Score = 27.3 bits (61), Expect = 9.9
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 78 SGF---DEMVAGTQRK-YYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVS 124
+GF D +G + ++G + +GKTS ++ + N+ V S
Sbjct: 31 TGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.368
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,759,319
Number of extensions: 352994
Number of successful extensions: 995
Number of sequences better than 10.0: 1
Number of HSP's gapped: 951
Number of HSP's successfully gapped: 92
Length of query: 390
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 295
Effective length of database: 4,049,298
Effective search space: 1194542910
Effective search space used: 1194542910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)