BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016418
         (390 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
           Pneumococcal Virulence Factor Spua
          Length = 1014

 Score = 34.7 bits (78), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 22  WVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVV 68
           W+    TV+V  D + N L  G P   +  +I+G ++ V  +FK ++
Sbjct: 698 WMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLI 744


>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
           Pneumococcal Virulence Factor Spua
          Length = 714

 Score = 34.7 bits (78), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 22  WVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVV 68
           W+    TV+V  D + N L  G P   +  +I+G ++ V  +FK ++
Sbjct: 391 WMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLI 437


>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
           Pneumococcal Virulence Factor Spua In Complex With An
           Inhibitor
          Length = 708

 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 22  WVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVV 68
           W+    TV+V  D + N L  G P   +  +I+G ++ V  +FK ++
Sbjct: 392 WMKHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLI 438


>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
           Sap
 pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
           With Maltotetraose
          Length = 877

 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 22  WVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMV 67
           W+    TV V  D + N+L  G P      +I+G  Q++ G+FK +
Sbjct: 506 WMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQSLQGIFKNI 551


>pdb|1F5V|A Chain A, Structure And Site-Directed Mutagenesis Of A Flavoprotein
           From Escherichia Coli That Reduces Nitrocompounds.
           Alteration Of Pyridine Nucleotide Binding By A Single
           Amino Acid Substitution
 pdb|1F5V|B Chain B, Structure And Site-Directed Mutagenesis Of A Flavoprotein
           From Escherichia Coli That Reduces Nitrocompounds.
           Alteration Of Pyridine Nucleotide Binding By A Single
           Amino Acid Substitution
          Length = 240

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 12/93 (12%)

Query: 35  VVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLP---------LLGQLADEYGRKPLL 85
           +  NAL   +      +YI GL+  +  V K++ LP          LG  AD    KP L
Sbjct: 111 MAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWPADNPDLKPRL 170

Query: 86  ---LITVSTTIVPFTLLAFNQSQEFVYAYYVLR 115
              ++    +  P    A  Q  E +  YY+ R
Sbjct: 171 PASILVHENSYQPLDKGALAQYDEQLAEYYLTR 203


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,150,224
Number of Sequences: 62578
Number of extensions: 310930
Number of successful extensions: 675
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 6
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)