BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016418
(390 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens
GN=HIATL1 PE=2 SV=3
Length = 506
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 134/323 (41%), Gaps = 57/323 (17%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLL------------- 99
++GL Q V G+ + PL+G L+D +GRKP LL TV T P L+
Sbjct: 81 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPWWYFAMISV 140
Query: 100 --AFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYAVSIALLIFVPVYMQ--------- 148
F+ + ++AY T + S + ++ +A S+ + Y+
Sbjct: 141 SGVFSVTFSVIFAYVADVTQEHERST-AYGWVSATFAASLVSSPAIGAYLSASYGDSLVV 199
Query: 149 ------------FFLVETVESAPRKDQESS-GLK---KAVNVLDRRYKSMRDAALMVVSS 192
F LV ES P K + S G + K + K +D+ +++
Sbjct: 200 LVATVVALLDICFILVAVPESLPEKMRPVSWGAQISWKQADPFASLKKVGKDSTVLL--- 256
Query: 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ-----I 247
I F L +G + YL+ V GF + + + MVGI SIV+Q I
Sbjct: 257 -----ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMVGILSIVAQTAFLSI 311
Query: 248 LVLPLLNPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASG 304
L+ L N LL + +YG +W+ + + + + + P+ A++S+ +
Sbjct: 312 LMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAISALVSRNAE 371
Query: 305 LNNQGKAQGFIAGVQSISSLLSP 327
+ QG AQG I G++ + + L P
Sbjct: 372 SDQQGVAQGIITGIRGLCNGLGP 394
>sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus
GN=Hiatl1 PE=2 SV=1
Length = 507
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 133/323 (41%), Gaps = 57/323 (17%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLL------------- 99
++GL Q V G+ + PL+G L+D +GRKP LL TV T P L+
Sbjct: 83 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPWWYFGMISV 142
Query: 100 --AFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYAVSIALLIFVPVYMQ--------- 148
F+ + ++AY T + S + ++ +A S+ + Y+
Sbjct: 143 SGVFSVTFSVIFAYVADFTQEHERST-AYGWVSATFAASLVSSPAIGTYLSSNYGDSLVV 201
Query: 149 ------------FFLVETVESAPRKDQESS-GLK---KAVNVLDRRYKSMRDAALMVVSS 192
F LV ES P K + +S G + K + K +D+ +++
Sbjct: 202 LVATVVALLDICFILVAVPESLPEKIRPASWGAQISWKQADPFASLKKVGKDSTVLL--- 258
Query: 193 PTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPL 252
I F L +G + YL+ V GF + + MVGI SI++Q + L
Sbjct: 259 -----ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMVGILSILAQTVFLSK 313
Query: 253 L-----NPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASG 304
L N LL I +YG +W+ + + + + + P+ A+IS+ +
Sbjct: 314 LMRSLGNKNTVLLGLGFQILQLAWYGFGAQAWMMWAAGTVAAMSSITFPAVSALISRNAE 373
Query: 305 LNNQGKAQGFIAGVQSISSLLSP 327
+ QG AQG I G++ + + L P
Sbjct: 374 SDQQGVAQGIITGIRGLCNGLGP 396
>sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus
GN=HIATL1 PE=2 SV=1
Length = 502
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 134/330 (40%), Gaps = 71/330 (21%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYY 112
++GL Q V G+ + PL+G L+D +GRKP LL TV T P L+ + + Y+
Sbjct: 78 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISP-----WWYF 132
Query: 113 VLRTISYIISQGSIFCIAVAYAVSI------------------ALLIFVPV---YMQ--- 148
+ +IS + S F + AY + A L+ P Y+
Sbjct: 133 AMISISGVFS--VTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 190
Query: 149 ------------------FFLVETVESAPRKDQE-SSGLK---KAVNVLDRRYKSMRDAA 186
F L+ ES P K + S G + K + K +D+
Sbjct: 191 GDSLVVLVATVVALLDICFILLAVPESLPEKMRPLSWGARISWKQADPFASLKKVGKDST 250
Query: 187 LMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQ 246
+++ I F L +G + YL+ V GF + + + MVGI SIV+Q
Sbjct: 251 ILL--------ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAMVGILSIVAQ 302
Query: 247 ILVLPLL-----NPFVALLASIAYALF----YGLAWASWVPYLSASFGVIYVLVKPSTYA 297
+ L L N LL + + +F YG +W+ + + + + P+
Sbjct: 303 TVFLTSLMRSLGNKNTVLLG-LGFQMFQLAWYGFGSQAWMMWAAGIVAAVSSITFPAVST 361
Query: 298 IISKASGLNNQGKAQGFIAGVQSISSLLSP 327
++S+ + N QG AQG I G++ + + L P
Sbjct: 362 LVSQNADSNQQGVAQGIITGIRGLCNGLGP 391
>sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus
GN=Hiatl1 PE=2 SV=3
Length = 507
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 55/322 (17%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEF----- 107
++GL Q V G+ + PL+G L+D +GRKP LL TV T P L+ N F
Sbjct: 83 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRINPWWYFGMISV 142
Query: 108 ----------VYAYYV------LRTISY----------IISQGSIFC-IAVAYAVSIALL 140
++AY R+ +Y ++S +I ++ Y S+ +L
Sbjct: 143 SGVFSVTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSANYGDSLVVL 202
Query: 141 IFVPVYMQ---FFLVETVESAPRKDQESS-GLK---KAVNVLDRRYKSMRDAALMVVSSP 193
+ V + F L+ ES K + +S G + K + K +D+ +++
Sbjct: 203 VATLVALLDICFILIAVPESLSEKIRPASWGAQISWKQADPFASLKKVGKDSTVLL---- 258
Query: 194 TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQILVLPLL 253
I F L +G + YL+ V GF + + MVGI SIV+Q + L L
Sbjct: 259 ----ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMVGILSIVAQTVFLSKL 314
Query: 254 -----NPFVALLA---SIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGL 305
N LL + +YG +W+ + + + + + P+ A+IS+ +
Sbjct: 315 MRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAVSALISRNAES 374
Query: 306 NNQGKAQGFIAGVQSISSLLSP 327
+ QG AQG + G++ + + L P
Sbjct: 375 DQQGVAQGIVTGIRGLCNGLGP 396
>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1
PE=2 SV=3
Length = 490
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 136/327 (41%), Gaps = 65/327 (19%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEF----- 107
++GL Q V G+ + PL+G L+D +GRK LL+TV T P L+ + F
Sbjct: 73 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISV 132
Query: 108 ----------VYAYYV------LRTISY-IISQ----------------GSIF--CIAVA 132
V+AY R+++Y ++S G ++ + V
Sbjct: 133 SGVFAVTFSVVFAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVV 192
Query: 133 YAVSIALLIFVPVYMQFFLVETVESAPRKDQESSGLK----KAVNVLDRRYKSMRDAALM 188
A +IALL F LV ES P K + +S + + K +D+ ++
Sbjct: 193 LATAIALLDIC-----FILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQDSIVL 247
Query: 189 VVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQIL 248
+ I F L +G + YL+ + F+ + + ++GI SI++Q +
Sbjct: 248 L--------ICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTI 299
Query: 249 VLPLLNPFVALLASIAYAL--------FYGLAWASWVPYLSASFGVIYVLVKPSTYAIIS 300
VL LL + +I L +YG W+ + + + + + P+ A++S
Sbjct: 300 VLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVS 359
Query: 301 KASGLNNQGKAQGFIAGVQSISSLLSP 327
+ + + QG QG I G++ + + L P
Sbjct: 360 RTADADQQGVVQGMITGIRGLCNGLGP 386
>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1
PE=2 SV=2
Length = 490
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 136/327 (41%), Gaps = 65/327 (19%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEF----- 107
++GL Q V G+ + PL+G L+D +GRK LL+TV T P L+ + F
Sbjct: 73 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISV 132
Query: 108 ----------VYAYYV------LRTISY-IISQ----------------GSIF--CIAVA 132
V+AY R+++Y ++S G ++ + V
Sbjct: 133 SGVFAVTFSVVFAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVV 192
Query: 133 YAVSIALLIFVPVYMQFFLVETVESAPRKDQESSGLK----KAVNVLDRRYKSMRDAALM 188
A +IALL F LV ES P K + +S + + K +D+ ++
Sbjct: 193 LATAIALLDIC-----FILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQDSIVL 247
Query: 189 VVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIVSQIL 248
+ I F L +G + YL+ + F+ + + ++GI SI++Q +
Sbjct: 248 L--------ICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTI 299
Query: 249 VLPLLNPFVALLASIAYAL--------FYGLAWASWVPYLSASFGVIYVLVKPSTYAIIS 300
VL LL + +I L +YG W+ + + + + + P+ A++S
Sbjct: 300 VLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVS 359
Query: 301 KASGLNNQGKAQGFIAGVQSISSLLSP 327
+ + + QG QG I G++ + + L P
Sbjct: 360 RTADADQQGVVQGMITGIRGLCNGLGP 386
>sp|P51563|TCR7_VIBAN Tetracycline resistance protein, class G OS=Vibrio anguillarum
GN=tetA PE=3 SV=1
Length = 393
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 63 VFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYI 120
+ ++V P+LGQL+D YGR+P+LL +++ V +T++A S ++ Y+ R +S +
Sbjct: 52 LMQVVFAPMLGQLSDSYGRRPVLLASLAGAAVDYTIMA---SAPVLWVLYIGRLVSGV 106
>sp|P02982|TCR1_ECOLX Tetracycline resistance protein, class A OS=Escherichia coli
GN=tetA PE=3 SV=2
Length = 399
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 9 RPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVV 68
RPL+ +L + + V + + VL ++ + + T I ++ + + +
Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLA-----LYALMQFAC 59
Query: 69 LPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFC 128
P+LG L+D +GR+P+LL++++ V + ++A + F++ Y+ R ++ I G+
Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMA---TAPFLWVLYIGRIVAGI--TGATGA 114
Query: 129 IAVAYAVSI 137
+A AY I
Sbjct: 115 VAGAYIADI 123
>sp|P51564|TCR8_PASMD Tetracycline resistance protein, class H OS=Pasteurella multocida
GN=tetA PE=3 SV=1
Length = 400
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 65 KMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQG 124
+++ P+LG+L+D+YGRKP+LL ++ + + L+AF+ + ++ Y+ R I+ I
Sbjct: 54 QVIFAPILGRLSDKYGRKPILLFSLLGAALDYLLMAFSTT---LWMLYIGRIIAGITGAT 110
Query: 125 SIFC 128
C
Sbjct: 111 GAVC 114
>sp|Q5VZR4|HIAL2_HUMAN Hippocampus abundant transcript-like protein 2 OS=Homo sapiens
GN=HIATL2 PE=2 SV=1
Length = 134
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 53 ISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQ 105
++GL Q V G+ + PL+G L+D +GRKP LL TV T P L+ + Q
Sbjct: 81 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPCQ 133
>sp|Q0P5M9|MFS10_BOVIN Major facilitator superfamily domain-containing protein 10 OS=Bos
taurus GN=MFSD10 PE=2 SV=1
Length = 456
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 97/239 (40%), Gaps = 52/239 (21%)
Query: 49 EAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFV 108
++ GL +V + + + PL G L+D GR+P +L++++ + + A ++S
Sbjct: 85 NSVLFGGLIGSVFSLLQFLSAPLTGALSDCLGRRPGMLLSLAGVATSYAVWAASKS---- 140
Query: 109 YAYYVLRTISYIISQGSI-FCIAV-----------------------AYAVSIALLIFVP 144
+A ++ + IS+G++ C A+ + + L F+P
Sbjct: 141 FAAFLASRVIGGISKGNVSLCTAIVADLGSPSARSKGMAVIGVAFSLGFTLGPTLGAFLP 200
Query: 145 ----------------VYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALM 188
+++ FL ET+ R + G + A ++L +R +A+
Sbjct: 201 SETVPWLALLFAVSDLLFIWCFLPETLPPEKRAPSVTLGFRAAADLLSP-LALLRFSAVA 259
Query: 189 VVSSP-------TLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGI 240
P +LRG+ V F Y SG+ L F + F F++ + ++ +G+
Sbjct: 260 RGPDPPTGVRLGSLRGLGLVYFLYLFLFSGLEFTLSFLVHQRFRFSRVEQGKMFFFIGL 318
>sp|P33733|TCR4_SALOR Tetracycline resistance protein, class D OS=Salmonella ordonez
GN=tetA PE=3 SV=1
Length = 394
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 25 EAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPL 84
+AM + +++ V+ + L P A + G+ + V ++ PLLG+ +D+ GR+P+
Sbjct: 15 DAMGIGLIMPVLPSLLREYLPEADVANHY-GILLALYAVMQVCFAPLLGRWSDKLGRRPV 73
Query: 85 LLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYI 120
LL++++ +TLLA + ++ Y+ R IS I
Sbjct: 74 LLLSLAGAAFDYTLLALS---NVLWMLYLGRIISGI 106
>sp|P58120|PMRA_LACLA Multi-drug resistance efflux pump PmrA homolog OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=pmrA PE=3 SV=1
Length = 405
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 46 TCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQS 104
+ + ++ISGL + VG+ M+ LG+L D+YG L+LI + T + + +AF QS
Sbjct: 248 STNNLMFISGLIVSAVGLSAMLSSSFLGRLGDKYGSHRLILIGLVFTFIIYLPMAFVQS 306
>sp|P02980|TCR2_ECOLX Tetracycline resistance protein, class B OS=Escherichia coli
GN=tetA PE=1 SV=1
Length = 401
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 35/54 (64%)
Query: 65 KMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTIS 118
+++ P LG+++D +GR+P+LL+++ + + LLAF+ + +Y +L I+
Sbjct: 54 QVIFAPWLGKMSDRFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRLLSGIT 107
>sp|P02981|TCR3_ECOLX Tetracycline resistance protein, class C OS=Escherichia coli
GN=tetA PE=1 SV=1
Length = 396
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 70 PLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCI 129
P+LG L+D +GR+P+LL ++ + + ++A +YA ++ I+ G+ +
Sbjct: 61 PVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRIVAGIT-----GATGAV 115
Query: 130 AVAYAVSI 137
A AY I
Sbjct: 116 AGAYIADI 123
>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis
thaliana GN=ZIFL2 PE=2 SV=2
Length = 484
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Query: 226 FNKNQFSEILMMVGIGSIVSQILVLPLLNPFVALLASIAYALFYGLAWASWVPYLSASFG 285
F+ E+L + G+G +V Q+LV P L V LLA I + + S PY++ G
Sbjct: 313 FSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSG 372
Query: 286 VIYVLV---------------KPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAM 330
V LV + +++KA N +G A G S+ P
Sbjct: 373 VTLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGG 432
Query: 331 SPLTSW 336
L SW
Sbjct: 433 GVLFSW 438
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 73 GQLADEYGRKPLLLITVSTTIVPFTLLAFNQS 104
G+LAD YGRKP++LI + I+ TL + S
Sbjct: 97 GKLADRYGRKPIILIGTFSVIIFNTLFGLSTS 128
>sp|Q7Z118|YMPB_CAEEL Putative transporter B0361.11 OS=Caenorhabditis elegans GN=B0361.11
PE=3 SV=2
Length = 578
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 37 TNALCPGQPTCSEAIYIS-GLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVP 95
TN L +CS + GL T+ + ++ +P + LAD YGRKP++ V+T I+
Sbjct: 130 TNLLVDFDLSCSHWFFQEFGL--TIFTIGAVIAVPFMSMLADRYGRKPII---VTTAILA 184
Query: 96 F 96
F
Sbjct: 185 F 185
>sp|O31563|YFIU_BACSU Uncharacterized MFS-type transporter YfiU OS=Bacillus subtilis
(strain 168) GN=yfiU PE=3 SV=1
Length = 518
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 67 VVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQS 104
V +P++G+L+D YGRK L LI V + L+A +QS
Sbjct: 63 VSVPIVGKLSDRYGRKKLFLIEVCLFGLGSLLVALSQS 100
>sp|P39352|YJHB_ECOLI Putative metabolite transport protein YjhB OS=Escherichia coli
(strain K12) GN=yjhB PE=3 SV=2
Length = 405
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 53 ISGLQQTVVGVFKMVVLPL----LGQLADEYGRKPLLL 86
I+ +Q T++G + P+ G +AD+YGRKP+++
Sbjct: 47 ITDIQATLIGTVAFIARPIGGGFFGAMADKYGRKPMMM 84
>sp|P37643|YHJE_ECOLI Inner membrane metabolite transport protein YhjE OS=Escherichia
coli (strain K12) GN=yhjE PE=1 SV=1
Length = 440
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 56 LQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVPFTLLAFN 102
L V+G MV P+ G LAD +GR+ ++I ++T I+ F L AFN
Sbjct: 294 LMMAVIGFGVMV--PVAGLLADAFGRRKSMVI-ITTLIILFALFAFN 337
>sp|Q09351|YRU5_CAEEL Uncharacterized protein T09B9.5 OS=Caenorhabditis elegans
GN=T09B9.5 PE=4 SV=1
Length = 363
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 231 FSEILMMVGIGSIV--SQILVL-----PLLNPFVALLASIA--YALFYGLAWASWVPYLS 281
F+ + M++ +G ++ + I V+ P+ +P LLASI+ +A+ G L+
Sbjct: 22 FTLVEMILAVGGLIMNTNITVICHKASPMPHPQRRLLASISINFAILSGFQ-------LA 74
Query: 282 ASFGVIYVLVKPSTYAIISKASGLNN--------QGKAQGFIAGVQSISSLLSPLAMSPL 333
+F + V+ +P + + + L A F+ GVQS L P+ SP+
Sbjct: 75 RNFFLFLVMQQPCLNQVTTVSCKLQQFPLIFCYIHCAASFFLLGVQSNFLKLKPIDKSPM 134
Query: 334 TSWFLSTDAPFNCKGFSIIVASICLMVSL 362
W+LS C + +A++C+ +SL
Sbjct: 135 -KWYLS------CSVWQSTIAAVCVALSL 156
>sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain
Eb661) GN=mdtG PE=3 SV=1
Length = 411
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 70 PLLGQL-ADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFV 108
PL+G L AD +G +P+ IT S V F + F +EFV
Sbjct: 160 PLIGGLLADSFGLRPVFFITASVLFVCFIMTLFAVREEFV 199
>sp|Q95R48|OCTL_DROME Organic cation transporter-like protein OS=Drosophila melanogaster
GN=Orct2 PE=2 SV=2
Length = 567
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 71 LLGQLADEYGRKPLLLITVSTTIVPFTLLAFNQSQEFVYAY 111
+ GQL+D+YGRKP+L ++ ++ F +LA + F Y +
Sbjct: 147 VFGQLSDKYGRKPILFASLVIQVL-FGVLAGVAPEYFTYTF 186
>sp|D5B5U5|MDFA_YERPZ Multidrug transporter MdfA OS=Yersinia pestis (strain Z176003)
GN=mdfA PE=3 SV=2
Length = 409
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 14 LLLPLCV------HWVAEAMTVSVLVDVVT--NALCPGQPTCSEAIYISGLQQTVVGVFK 65
LL PLC+ ++A M ++ VV NA PT A Y++G
Sbjct: 16 LLFPLCLVLFEFAAYIANDMIQPGMLAVVAEFNASVEWVPTSMTA-YLAG---------G 65
Query: 66 MVVLPLLGQLADEYGRKPLLLITVSTTIVP-FTLLAFNQSQEFVYAYYVLRTISYIISQG 124
M + LLG L+D GR+P++L V+ +V +L N ++F+ + ++ G
Sbjct: 66 MFLQWLLGPLSDRRGRRPVMLAGVAFFVVTCLAILLVNSIEQFI-------AMRFLQGIG 118
Query: 125 SIFCIAVAYA 134
F AV YA
Sbjct: 119 LCFIGAVGYA 128
>sp|A9R4E0|MDFA_YERPG Multidrug transporter MdfA OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=mdfA PE=3 SV=2
Length = 409
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 14 LLLPLCV------HWVAEAMTVSVLVDVVT--NALCPGQPTCSEAIYISGLQQTVVGVFK 65
LL PLC+ ++A M ++ VV NA PT A Y++G
Sbjct: 16 LLFPLCLVLFEFAAYIANDMIQPGMLAVVAEFNASVEWVPTSMTA-YLAG---------G 65
Query: 66 MVVLPLLGQLADEYGRKPLLLITVSTTIVP-FTLLAFNQSQEFVYAYYVLRTISYIISQG 124
M + LLG L+D GR+P++L V+ +V +L N ++F+ + ++ G
Sbjct: 66 MFLQWLLGPLSDRRGRRPVMLAGVAFFVVTCLAILLVNSIEQFI-------AMRFLQGIG 118
Query: 125 SIFCIAVAYA 134
F AV YA
Sbjct: 119 LCFIGAVGYA 128
>sp|D0JKF6|MDFA_YERPD Multidrug transporter MdfA OS=Yersinia pestis (strain D106004)
GN=mdfA PE=3 SV=2
Length = 409
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 14 LLLPLCV------HWVAEAMTVSVLVDVVT--NALCPGQPTCSEAIYISGLQQTVVGVFK 65
LL PLC+ ++A M ++ VV NA PT A Y++G
Sbjct: 16 LLFPLCLVLFEFAAYIANDMIQPGMLAVVAEFNASVEWVPTSMTA-YLAG---------G 65
Query: 66 MVVLPLLGQLADEYGRKPLLLITVSTTIVP-FTLLAFNQSQEFVYAYYVLRTISYIISQG 124
M + LLG L+D GR+P++L V+ +V +L N ++F+ + ++ G
Sbjct: 66 MFLQWLLGPLSDRRGRRPVMLAGVAFFVVTCLAILLVNSIEQFI-------AMRFLQGIG 118
Query: 125 SIFCIAVAYA 134
F AV YA
Sbjct: 119 LCFIGAVGYA 128
>sp|D0JUX5|MDFA_YERP1 Multidrug transporter MdfA OS=Yersinia pestis (strain D182038)
GN=mdfA PE=3 SV=2
Length = 409
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 26/130 (20%)
Query: 14 LLLPLCV------HWVAEAMTVSVLVDVVT--NALCPGQPTCSEAIYISGLQQTVVGVFK 65
LL PLC+ ++A M ++ VV NA PT A Y++G
Sbjct: 16 LLFPLCLVLFEFAAYIANDMIQPGMLAVVAEFNASVEWVPTSMTA-YLAG---------G 65
Query: 66 MVVLPLLGQLADEYGRKPLLLITVSTTIVP-FTLLAFNQSQEFVYAYYVLRTISYIISQG 124
M + LLG L+D GR+P++L V+ +V +L N ++F+ + ++ G
Sbjct: 66 MFLQWLLGPLSDRRGRRPVMLAGVAFFVVTCLAILLVNSIEQFI-------AMRFLQGIG 118
Query: 125 SIFCIAVAYA 134
F AV YA
Sbjct: 119 LCFIGAVGYA 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,884,285
Number of Sequences: 539616
Number of extensions: 4712522
Number of successful extensions: 16920
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 16795
Number of HSP's gapped (non-prelim): 177
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)