Query 016418
Match_columns 390
No_of_seqs 606 out of 1470
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 13:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 5.5E-31 1.9E-35 242.8 26.0 337 10-367 29-432 (451)
2 3o7q_A L-fucose-proton symport 100.0 4.1E-28 1.4E-32 222.7 35.6 308 10-344 27-415 (438)
3 4gc0_A D-xylose-proton symport 100.0 8.8E-28 3E-32 223.9 24.0 354 16-376 19-471 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 9.4E-27 3.2E-31 216.9 27.1 323 8-336 12-448 (491)
5 2gfp_A EMRD, multidrug resista 99.9 2.1E-27 7.2E-32 213.5 12.9 295 12-337 3-353 (375)
6 2cfq_A Lactose permease; trans 99.9 1.6E-25 5.6E-30 203.9 22.2 333 7-367 5-398 (417)
7 2xut_A Proton/peptide symporte 99.9 6.1E-22 2.1E-26 185.9 20.4 123 6-134 9-134 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.5 9.4E-13 3.2E-17 122.3 20.3 150 192-342 12-177 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.5 1.1E-12 3.7E-17 120.4 19.7 150 192-344 27-189 (451)
10 3o7q_A L-fucose-proton symport 99.5 2.2E-12 7.7E-17 117.8 20.0 139 197-336 30-180 (438)
11 2xut_A Proton/peptide symporte 99.5 3.5E-12 1.2E-16 119.5 18.7 166 192-365 11-195 (524)
12 2gfp_A EMRD, multidrug resista 99.4 1.8E-12 6.1E-17 116.0 14.4 158 197-363 4-169 (375)
13 2cfq_A Lactose permease; trans 98.9 2.2E-10 7.4E-15 104.0 -0.1 152 189-344 3-170 (417)
14 4gc0_A D-xylose-proton symport 98.8 4.1E-08 1.4E-12 90.9 12.2 108 230-337 56-189 (491)
15 2g9p_A Antimicrobial peptide l 46.5 3.6 0.00012 18.8 -0.2 13 72-84 3-15 (26)
16 2i68_A Protein EMRE; transmemb 30.5 1.5E+02 0.0052 21.3 7.2 19 84-102 32-50 (137)
17 1cmk_I CAMP-dependent protein 22.2 18 0.00061 17.4 -0.1 10 76-85 9-18 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=5.5e-31 Score=242.81 Aligned_cols=337 Identities=13% Similarity=0.058 Sum_probs=241.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.+..+....+...+..+...+.+|.+.++ . .+..+.|++.+++.++..++++++|+++||+|||+++..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQ--------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSS--------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 34455566666666767777888866522 2 33455699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------
Q 016418 90 STTIVPFTLLAF----NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------- 134 (390)
Q Consensus 90 ~~~~i~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------- 134 (390)
++.+++.+++++ +++ ++.++++|+++|+ +.+...+...+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHH-HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 899 9999999999999 5566667777777
Q ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCccccccccccc--ccccccccccccHHHH-HHhhhcCcchh
Q 016418 135 ---------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLK--KAVNVLDRRYKSMRDA-ALMVVSSPTLR 196 (390)
Q Consensus 135 ---------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 196 (390)
+.+++.++..++.++.+||++++.+.++.++.+++ .+.++..+++.+.++. .+..+++|.++
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLW 255 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHH
Confidence 23334444445555677887655332211111110 0000011111122222 36677899999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhH--HHHH----HHHHHH-HHH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLL--NPFV----ALLASI-AYA 266 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~--~~~~----~~~~~~-~~~ 266 (390)
...+..++..........+.|.|+++.+|+++.+.+.+....++... +..+++.||+ +||. +..+.. ++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999889999988888766655444 4558899998 8777 222322 455
Q ss_pred HhHhccc--chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHH-HHhhhhhhhhhhhcccccCCC
Q 016418 267 LFYGLAW--ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSI-SSLLSPLAMSPLTSWFLSTDA 342 (390)
Q Consensus 267 ~~~~~~~--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~g~~~~g~l~~~~~~~~~ 342 (390)
+.+...+ +.+... ..++.|++.+...+...++..|..|+++||+++|+.+...++ |..++|.+.|.+.+.. ++..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~ 414 (451)
T 1pw4_A 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG 414 (451)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHH
Confidence 5555543 344443 556778888888888899999999999999999999999999 9999999999999976 5444
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhhc
Q 016418 343 PFNCKGFSIIVASICLMVSLSCACM 367 (390)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (390)
.+.+.+++.+++.+....
T Consensus 415 -------~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 415 -------GFMVMIGGSILAVILLIV 432 (451)
T ss_dssp -------HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 345555555555544443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=4.1e-28 Score=222.73 Aligned_cols=308 Identities=13% Similarity=0.079 Sum_probs=230.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHH
Q 016418 10 PLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITV 89 (390)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~ 89 (390)
.+..+....+...+..+...+.+|.+.++. |.++ .+.|++.+++.++..++++++|+++||+|||++++.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~-----~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~ 98 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAF---TLTN-----FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL 98 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CCCS-----HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHc---CCCH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH
Confidence 445566667777777788899999876554 6555 55699999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---HhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 90 STTIVPFTLL---AFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 90 ~~~~i~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
++.+++.++. .++++ ++.+++.|++.|+ +.+...+...+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 99 FLYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccc---HHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 88899 9999999999999 6577777777777
Q ss_pred -HH-------------------------------H----HHHHHHHH--HHHHhcccCCCCCcccccccccccccccccc
Q 016418 135 -VS-------------------------------I----ALLIFVPV--YMQFFLVETVESAPRKDQESSGLKKAVNVLD 176 (390)
Q Consensus 135 -~~-------------------------------~----~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 176 (390)
+. - ....+..+ +..+..++++.++++++ .
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-------------~ 241 (438)
T 3o7q_A 175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS-------------D 241 (438)
T ss_dssp HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCC-------------C
T ss_pred HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc-------------c
Confidence 11 0 01111111 11112222111111000 0
Q ss_pred cccccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHH-HhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhh
Q 016418 177 RRYKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFY-LKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPL 252 (390)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~ 252 (390)
++..+.++.++.++++|.++...+..++..........+.|.| +++.+|.++.+.+.......+... +..+++.||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r 321 (438)
T 3o7q_A 242 AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR 321 (438)
T ss_dssp SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112334556778889999999999898888888999999999 888889999988887766554443 466899999
Q ss_pred HHHHH----HHHHHHHHHHhHhcccchhHHHHHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhh
Q 016418 253 LNPFV----ALLASIAYALFYGLAWASWVPYLSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPL 328 (390)
Q Consensus 253 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~ 328 (390)
++||+ +.+...++.+.....++.+..+..++.+++.+...|...++..|..|++ ++++.++.. ...++..++|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~ 399 (438)
T 3o7q_A 322 FAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTP 399 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHH
Confidence 99998 5555566666666666666555667888888989999999999999955 888888877 67799999999
Q ss_pred hhhhhhcccccCCCCC
Q 016418 329 AMSPLTSWFLSTDAPF 344 (390)
Q Consensus 329 ~~g~l~~~~~~~~~~~ 344 (390)
+.|.+.|..++++..+
T Consensus 400 ~~g~l~~~~g~~~~~~ 415 (438)
T 3o7q_A 400 VMGFVSDAAGNIPTAE 415 (438)
T ss_dssp HHHHHHHHHTSSGGGG
T ss_pred HHHHHHHHhcchHHHH
Confidence 9999999883266544
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=8.8e-28 Score=223.87 Aligned_cols=354 Identities=13% Similarity=0.075 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHHHHHH
Q 016418 16 LPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVSTTIVP 95 (390)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~ 95 (390)
++.++.+.+.+++.+.+|.+..+...+...+.+.+..+.|++.+++.++.+++++++|+++||+|||++++++.++..++
T Consensus 19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~ 98 (491)
T 4gc0_A 19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS 98 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34455666667777777766544321112233455677799999999999999999999999999999999999999999
Q ss_pred HHHHHh------------------ccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-----------------------
Q 016418 96 FTLLAF------------------NQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA----------------------- 134 (390)
Q Consensus 96 ~~~~~~------------------~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----------------------- 134 (390)
.+++++ ++| +++++++|+++|+ +.|...+....++
T Consensus 99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g 174 (491)
T 4gc0_A 99 GVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG 174 (491)
T ss_dssp HHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence 999884 677 9999999999999 6677778887777
Q ss_pred -----------------------------HHHHHHHHHHHHHHHhcccCCCCCccccccccccc--------c----ccc
Q 016418 135 -----------------------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLK--------K----AVN 173 (390)
Q Consensus 135 -----------------------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--------~----~~~ 173 (390)
....+..+..+...+.+||+|++...+.++++.++ + +..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~ 254 (491)
T 4gc0_A 175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ 254 (491)
T ss_dssp HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHH
Confidence 11122223334455677888765222111110000 0 000
Q ss_pred ccccccccHHH--HHHhhhcCcchhHHHHHHHHHHHH-hhhHHHHHHHHHhhhcCCCchhHHHH---HHHHHHHHHHHHH
Q 016418 174 VLDRRYKSMRD--AALMVVSSPTLRGISFVSFFYKLG-MSGISAVLLFYLKAVFGFNKNQFSEI---LMMVGIGSIVSQI 247 (390)
Q Consensus 174 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~---~~~~~~~~~~~~~ 247 (390)
+..+.....++ ......+.++.........+.... ......+.+.+.+ ..+.+....... ..+..+.+.+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (491)
T 4gc0_A 255 EIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTVLAI 333 (491)
T ss_dssp HHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 00000000000 011122333333333333333333 3344444444444 446655544333 3344455556778
Q ss_pred HHHhhHHHHH----HHHHHHHHHHhHhc---c-cchhHHH-HHHHHHHHH-hhhHHHHHHHHhhccCCCchhhHHHHHHH
Q 016418 248 LVLPLLNPFV----ALLASIAYALFYGL---A-WASWVPY-LSASFGVIY-VLVKPSTYAIISKASGLNNQGKAQGFIAG 317 (390)
Q Consensus 248 ~~~~~~~~~~----~~~~~~~~~~~~~~---~-~~~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 317 (390)
++.||++||+ +.....++.+.+.. . .+.+... ...+...+. ....|..+.+.+|.+|++.|+++.|+.+.
T Consensus 334 ~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~ 413 (491)
T 4gc0_A 334 MTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA 413 (491)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred HHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 9999999998 33333333332221 1 1222222 222222332 33457778899999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhcccccCCCCCCCCchHHHHHHHHHHHHHHhh-hccccccCCCC
Q 016418 318 VQSISSLLSPLAMSPLTSWFLSTDAPFNCKGFSIIVASICLMVSLSCA-CMLDTEENSTN 376 (390)
Q Consensus 318 ~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 376 (390)
.+++++.+++.+.+.+.+.. .... ....+..+++.+++.+++.++. ++.+|.+.++-
T Consensus 414 ~~~~~~~i~~~~~p~l~~~~-~~~~-~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 414 AQWLANYFVSWTFPMMDKNS-WLVA-HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHHHHHTHHHHHCHHH-HHHH-HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHh-hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 99999999998887776532 1000 0111224555666666655544 44555555443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=9.4e-27 Score=216.91 Aligned_cols=323 Identities=9% Similarity=-0.043 Sum_probs=210.9
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccc-cCCchHHH
Q 016418 8 LRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADE-YGRKPLLL 86 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~Grk~~l~ 86 (390)
++.++.+....+...++.....+.++.|+.+.. ..++.+.+..+.|++.+.+.++..++++++|+++|| +|||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 456677777888888888888888888886641 112334455777999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH--------------------------------
Q 016418 87 ITVSTTIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA-------------------------------- 134 (390)
Q Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-------------------------------- 134 (390)
.+.++..++.++++++++ ++.+++.|+++|+ +.+...+...+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFG---ASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999 6566777777766
Q ss_pred ---------------HHHHHHHHHHHHHHHhcccCCCCCccccccccccccccc--cc----------------------
Q 016418 135 ---------------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVN--VL---------------------- 175 (390)
Q Consensus 135 ---------------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~~---------------------- 175 (390)
+.++..++..+...+..|+..+++.+++.++.++++.++ +.
T Consensus 166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 245 (491)
T 4aps_A 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS 245 (491)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 222222222222222223322211111110000000000 00
Q ss_pred ccc--------------------cccHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHH
Q 016418 176 DRR--------------------YKSMRDAALMVVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEIL 235 (390)
Q Consensus 176 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 235 (390)
.++ .++.+...+...+....+...+..++....+......++.|.++..+.+..+.+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (491)
T 4aps_A 246 LPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQ 325 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGT
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHh
Confidence 000 000000001111222344455556666667777788889999887777744444443
Q ss_pred H---HHHHHHHHHHHHHHhhHHHHH---------HHHHHHHHHHhHhccc---------chhHHH-HHHHHHHHHhhhHH
Q 016418 236 M---MVGIGSIVSQILVLPLLNPFV---------ALLASIAYALFYGLAW---------ASWVPY-LSASFGVIYVLVKP 293 (390)
Q Consensus 236 ~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~g~~~~~~~~ 293 (390)
. ...+......+++.||++||. +..+.++++..+.... +.+... ..++.+++.+...+
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 405 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP 405 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence 3 333334445578899998774 4444555555444421 333333 55778888888889
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 016418 294 STYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSW 336 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~ 336 (390)
..+++..|..|+++||++.|+.+...++|..++|.+.+.+.+.
T Consensus 406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988764
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=2.1e-27 Score=213.52 Aligned_cols=295 Identities=15% Similarity=0.102 Sum_probs=215.5
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHHHHHHH
Q 016418 12 LHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLLITVST 91 (390)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~~~~~~ 91 (390)
..+....++..++.+...|.+|.+.++. |.++ .+.|++.+.+.++..+++++.|+++||+|||+++..+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~-----~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDL---NVRE-----GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS---SSTT-----HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHc---CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 4566778888889999999999886443 4443 5669999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHhhcccchHHHHHHHHH-------------------------------------
Q 016418 92 TIVPFTLLAFNQSQEFVYAYYVLRTISYIISQGSIFCIAVAYA------------------------------------- 134 (390)
Q Consensus 92 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i------------------------------------- 134 (390)
..++.++.+++++ ++.+++.|++.|+ +.+...+...+++
T Consensus 75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 75 FMLATLVAVTTSS---LTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999999 9999999999999 5566667766666
Q ss_pred --------HHHHHHHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhHHHHHHHHHH
Q 016418 135 --------VSIALLIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRGISFVSFFYK 206 (390)
Q Consensus 135 --------~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (390)
+.+++..+..+...+.+||+++++++++ +.+++ +++.+|+|+++...+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~----~~~~~~~~~~~~~~~~~~~~~ 212 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT--------------RLLTS----YKTLFGNSGFNCYLLMLIGGL 212 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC--------------CTTTC----STHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc--------------cHHHH----HHHHhcCcchHHHHHHHHHHH
Confidence 1222222222223344565543322110 00112 234556788888888888888
Q ss_pred HHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH--HHHH-HHHHHHh--Hhc--ccchh
Q 016418 207 LGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV--ALLA-SIAYALF--YGL--AWASW 276 (390)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~-~~~~~~~--~~~--~~~~~ 276 (390)
........+.|.|+++.+|.++.+.+.+....++...+ ..+.+.||.+++. +... ...+... ... .++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (375)
T 2gfp_A 213 AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVW 292 (375)
T ss_dssp HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHH
Confidence 88888999999999987899998888887766655543 3355566665533 2222 1112211 111 12344
Q ss_pred HHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 277 VPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 277 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
... ..++.+++.+...+...++..|..| ++||++.|+.+...++|..++|.+.|.+.+..
T Consensus 293 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 293 TLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp HHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 443 5567788888889999999999998 89999999999999999999999999998764
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=1.6e-25 Score=203.90 Aligned_cols=333 Identities=11% Similarity=0.091 Sum_probs=198.4
Q ss_pred cccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCcchhHHHHHHHHHHHHHHHHhHhhhhcccccccCCchHHH
Q 016418 7 ELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQPTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEYGRKPLLL 86 (390)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~Grk~~l~ 86 (390)
++|+++.+....++...+.+...|.+|.|+++.+ |.++. +.|++.+.+.++..++++++|+++||+|||++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~s~~-----~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~ 77 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN--HISKS-----DTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTT--CCCTT-----TSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4566777777778888888899999999987654 55553 3499999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HHHhccCchhh-HHHHHHHHHHhhcccchHH----HHHHHHH------------------------
Q 016418 87 ITVSTTIVPFT---LLAFNQSQEFV-YAYYVLRTISYIISQGSIF----CIAVAYA------------------------ 134 (390)
Q Consensus 87 ~~~~~~~i~~~---~~~~~~~~~~~-~~l~~~r~l~G~~~~g~~~----~~~~~~i------------------------ 134 (390)
.+..+..+... ...+.+. . ..++..+.+.|+ ..+... +....+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 153 (417)
T 2cfq_A 78 WIITGMLVMFAPFFIFIFGPL---LQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153 (417)
T ss_dssp HHHHHTTSCHHHHHHHTHHHH---HHTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 88776654321 1111111 0 011223333333 111111 1111111
Q ss_pred ---HHHHH--------------HHHHHHHHHHhcccCCCCCcccccccccccccccccccccccHHHHHHhhhcCcchhH
Q 016418 135 ---VSIAL--------------LIFVPVYMQFFLVETVESAPRKDQESSGLKKAVNVLDRRYKSMRDAALMVVSSPTLRG 197 (390)
Q Consensus 135 ---~~~~~--------------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (390)
+.+.+ ..+......+..||+++++.+++ + .+++ + +++.+.+ .++.++++|+++.
T Consensus 154 ~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~----~~~~~~~-~~~~~~~~~~~~~ 224 (417)
T 2cfq_A 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA-N-AVGA--N----HSAFSLK-LALELFRQPKLWF 224 (417)
T ss_dssp HHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSS-S-SSSS--C----CCCCCHH-HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcccccccccc-c-cccc--c----cccccHH-HHHHHhcCCchhh
Confidence 00000 00111111122232221111000 0 0000 0 0011222 2345667888877
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhcCC---CchhHHHHHHHHH---HHHHHHHHHHHhhHHHHH----HHHHHHHHHH
Q 016418 198 ISFVSFFYKLGMSGISAVLLFYLKAVFGF---NKNQFSEILMMVG---IGSIVSQILVLPLLNPFV----ALLASIAYAL 267 (390)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 267 (390)
..+..+.....+.....++|.|+.+.++. +....+....... +.+.+..+++.||++||+ +....++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 225 LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 77665655555566667788888766542 2334455554433 334456689999999998 4444555555
Q ss_pred hHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHH-HHHHHHHHhhhhhhhhhhhcccccCCCCCC
Q 016418 268 FYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFI-AGVQSISSLLSPLAMSPLTSWFLSTDAPFN 345 (390)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~ 345 (390)
.....++.+... ...+.+++.+...+....+..|..|++.||++++.. +...++|+.++|.+.|.+.+.. +++.
T Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~--- 380 (417)
T 2cfq_A 305 GSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQG--- 380 (417)
T ss_dssp HHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHH---
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHH---
Confidence 555555555444 334556666666677788999999999999999994 8888999999999999999865 4433
Q ss_pred CCchHHHHHHHHHHHHHHhhhc
Q 016418 346 CKGFSIIVASICLMVSLSCACM 367 (390)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~ 367 (390)
.|.+.+++.+++.+..+.
T Consensus 381 ----~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 381 ----AYLVLGLVALGFTLISVF 398 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHHHh
Confidence 345556665655554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=6.1e-22 Score=185.93 Aligned_cols=123 Identities=15% Similarity=0.038 Sum_probs=98.7
Q ss_pred ccccchhHhHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC-CCcchhHHHHHHHHHHHHHHHHhHhhhhccccccc-CCch
Q 016418 6 WELRPLLHLLLPLCVHWVAEAMTVSVLVDVVTNALCPGQ-PTCSEAIYISGLQQTVVGVFKMVVLPLLGQLADEY-GRKP 83 (390)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~g~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-Grk~ 83 (390)
+.++.++.+....++..++.....+.++.|+.+.+ |. .+.+.+..+.|++.+++.++..+++++.|+++||+ |||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTAL--LLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSC--SSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34567788888899999998888899998887654 40 00113335569999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhcc-CchhhHHHHHHHHHHhhcccchHHHHHHHHH
Q 016418 84 LLLITVSTTIVPFTLLAFNQ-SQEFVYAYYVLRTISYIISQGSIFCIAVAYA 134 (390)
Q Consensus 84 ~l~~~~~~~~i~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i 134 (390)
++..+.++..++.++.++++ + ++.+++.|++.|+ +.+...+...+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~ 134 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIAL-GSGGIKPLVSSFM 134 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHH-HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHH-hccccchhHHHHH
Confidence 99999999999999999998 8 9999999999999 5455566666665
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.52 E-value=9.4e-13 Score=122.29 Aligned_cols=150 Identities=9% Similarity=0.115 Sum_probs=125.3
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhh-----cCCCchhHHHHHHHHHHHHH---HHHHHHHhh-HHHHH----H
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAV-----FGFNKNQFSEILMMVGIGSI---VSQILVLPL-LNPFV----A 258 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~-~~~~~----~ 258 (390)
.+.++......++..+.+.....+++.|+++. +|.++.+.+++.+...+... +..|.++|| ++||+ +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWG 91 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 34566777778888888888889999999887 89999999988776665544 456899999 89998 6
Q ss_pred HHHHHHHHHhHhcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 016418 259 LLASIAYALFYGLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNN--QGKAQGFIAGVQSISSLLSPLAMSPLTS 335 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~~~~~g~~~~g~l~~ 335 (390)
.++..++.+....+++.+.++ ..++.|++.+...+...+++.|.+|+++ |+++.+..+...++|..++|.+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 92 GVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777777888888877766 6688899999999999999999999988 7778888999999999999999999998
Q ss_pred ccccCCC
Q 016418 336 WFLSTDA 342 (390)
Q Consensus 336 ~~~~~~~ 342 (390)
.. +++.
T Consensus 172 ~~-g~~~ 177 (491)
T 4aps_A 172 AA-GYHV 177 (491)
T ss_dssp HS-CHHH
T ss_pred hh-hHHH
Confidence 65 5554
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=1.1e-12 Score=120.38 Aligned_cols=150 Identities=18% Similarity=0.159 Sum_probs=120.6
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHH
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIA 264 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~ 264 (390)
.+.+....+..+............+|.+.++. .++.+.|++.+...+... +..+.+.||++||+ +.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 34455566666666777777777788777654 888888988776665544 45589999999999 6666777
Q ss_pred HHHhHhc----ccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 016418 265 YALFYGL----AWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLS 339 (390)
Q Consensus 265 ~~~~~~~----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~ 339 (390)
+.++..+ .++.+.++ ..++.|++.+...+...+++.|.+|+++|+++.|+.+....+|..++|.+++.+.+.. +
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g 183 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-N 183 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-C
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 7777777 77777666 6688899999999999999999999999999999999999999999999999988876 5
Q ss_pred -CCCCC
Q 016418 340 -TDAPF 344 (390)
Q Consensus 340 -~~~~~ 344 (390)
++.++
T Consensus 184 ~w~~~f 189 (451)
T 1pw4_A 184 DWHAAL 189 (451)
T ss_dssp CSTTCT
T ss_pred cHHHHH
Confidence 66655
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.49 E-value=2.2e-12 Score=117.84 Aligned_cols=139 Identities=9% Similarity=-0.000 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
.+.+..+...+.........|.+ ++.+|.+..+.|++.+...+... +..+.+.||++||+ +.+..+++.++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666664 45569999999998877766554 46689999999999 666666666666
Q ss_pred ---hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh-cc
Q 016418 270 ---GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLT-SW 336 (390)
Q Consensus 270 ---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~-~~ 336 (390)
...++.+.++ ..++.|++.+...+...+++.|..|+++|+++.|+.+....+|..++|.+++.+. +.
T Consensus 109 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6677777776 6688999999999999999999999999999999999999999999999999998 44
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.45 E-value=3.5e-12 Score=119.46 Aligned_cols=166 Identities=12% Similarity=0.059 Sum_probs=129.6
Q ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcC------CCchhHHHHHHHHHHHHH---HHHHHHHhhH-HHHH----
Q 016418 192 SPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFG------FNKNQFSEILMMVGIGSI---VSQILVLPLL-NPFV---- 257 (390)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~~---~~~~~~~~~~-~~~~---- 257 (390)
+|.++.+.+..++..+.++....+++.|+++.+| +++.+.+++.+...+... +..|.+.||+ +||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4667778888888888888899999999988889 999999988776665544 4668999999 9988
Q ss_pred HHHHHHHHHHhHhccc-chhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHH---HHHHHHHHHhhhhhhhhh
Q 016418 258 ALLASIAYALFYGLAW-ASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGF---IAGVQSISSLLSPLAMSP 332 (390)
Q Consensus 258 ~~~~~~~~~~~~~~~~-~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~~~~~g~~~~g~ 332 (390)
+.++..++.++....+ +.+.++ ..++.|++.+...+...+++.|.+|+++|++..+. .+...++|..++|.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777 766665 56788999999999999999999999999876666 888999999999999999
Q ss_pred hhcccccCCCCCCCCchHHHHHHHHHHHHHHhh
Q 016418 333 LTSWFLSTDAPFNCKGFSIIVASICLMVSLSCA 365 (390)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (390)
+.+.. +++. .+.+.+++.+++.+..
T Consensus 171 l~~~~-g~~~-------~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 171 LLKNF-GAAV-------AFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHTS-CHHH-------HHHHHHHHHHHHHHHH
T ss_pred Hhccc-cHHH-------HHHHHHHHHHHHHHHH
Confidence 98765 4443 3444555544444443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.43 E-value=1.8e-12 Score=116.02 Aligned_cols=158 Identities=9% Similarity=-0.077 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHH---HHHHHHhhHHHHH----HHHHHHHHHHhH
Q 016418 197 GISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSIV---SQILVLPLLNPFV----ALLASIAYALFY 269 (390)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~ 269 (390)
.+....++...........+|.+.++ +|.++.+.+++.+...+...+ ..+.+.||++||+ +.....++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34556666667777777777776554 699999999888777666554 4489999999998 666677777777
Q ss_pred hcccchhHHH-HHHHHHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCc
Q 016418 270 GLAWASWVPY-LSASFGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWFLSTDAPFNCKG 348 (390)
Q Consensus 270 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~~~~~~~~~~~~ 348 (390)
...++.+.++ ..++.|++.+...+...+++.|..|+++|+++.+..+....+|..++|.+++.+.+.. +++.
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~------ 155 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA------ 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH------
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH------
Confidence 7777777665 5678899999999999999999999999999999999999999999999999998865 5443
Q ss_pred hHHHHHHHHHHHHHH
Q 016418 349 FSIIVASICLMVSLS 363 (390)
Q Consensus 349 ~~~~~~~~~~~~~~~ 363 (390)
.+.+.++..++..+
T Consensus 156 -~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 156 -CYLFLLVLCAGVTF 169 (375)
T ss_dssp -HHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHH
Confidence 33445555554444
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.87 E-value=2.2e-10 Score=103.97 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=95.4
Q ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH---HHHHHHHhhHHHHH----HHHH
Q 016418 189 VVSSPTLRGISFVSFFYKLGMSGISAVLLFYLKAVFGFNKNQFSEILMMVGIGSI---VSQILVLPLLNPFV----ALLA 261 (390)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~ 261 (390)
.+|+|+++......++....+.....++|.|+++.+|.++.+.|.+.+...+... +..|.++||++||+ +...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG 82 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4568888888888888888888888999999998889999999988876665544 45589999999998 1211
Q ss_pred HHH---HHHhHhcccch--hHHHHHHHHHH----HHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhh
Q 016418 262 SIA---YALFYGLAWAS--WVPYLSASFGV----IYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSP 332 (390)
Q Consensus 262 ~~~---~~~~~~~~~~~--~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~ 332 (390)
..+ ........+.. .......+.+. +.+...+....+..+. + ++++...|..+....+|..++|.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~~g~~~~~~~~g~~~~~~l~~~ 160 (417)
T 2cfq_A 83 MLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-S-RRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp TTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-H-HHHTCCHHHHSSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-h-hhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111111110 01111112222 2222333333444332 1 456777888888888999999999999
Q ss_pred hhcccccCCCCC
Q 016418 333 LTSWFLSTDAPF 344 (390)
Q Consensus 333 l~~~~~~~~~~~ 344 (390)
+.+. +++.++
T Consensus 161 l~~~--~~~~~f 170 (417)
T 2cfq_A 161 MFTI--NNQFVF 170 (417)
T ss_dssp HHHH--CSHHHH
T ss_pred HHHh--chhHHH
Confidence 9874 444433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.78 E-value=4.1e-08 Score=90.93 Aligned_cols=108 Identities=11% Similarity=-0.185 Sum_probs=82.1
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhHh------------------cccchhHHH-HHHH
Q 016418 230 QFSEILM---MVGIGSIVSQILVLPLLNPFV----ALLASIAYALFYG------------------LAWASWVPY-LSAS 283 (390)
Q Consensus 230 ~~g~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------------------~~~~~~~~~-~~~~ 283 (390)
..|++.+ +....+.+..|+++||+|||+ +.++..++.+..+ .+++.+.++ .-++
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 3445443 333445566799999999999 4444555555444 345666665 6689
Q ss_pred HHHHHhhhHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 016418 284 FGVIYVLVKPSTYAIISKASGLNNQGKAQGFIAGVQSISSLLSPLAMSPLTSWF 337 (390)
Q Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g~~~~g~l~~~~ 337 (390)
.|++.+...+....++.|..|+++|++..+..+.....|..+++.+........
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 189 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSG 189 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccc
Confidence 999999999999999999999999999999999999999998888877766543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=46.48 E-value=3.6 Score=18.83 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=10.2
Q ss_pred hcccccccCCchH
Q 016418 72 LGQLADEYGRKPL 84 (390)
Q Consensus 72 ~G~l~Dr~Grk~~ 84 (390)
.|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778889999864
No 16
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=30.47 E-value=1.5e+02 Score=21.28 Aligned_cols=19 Identities=26% Similarity=0.099 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 016418 84 LLLITVSTTIVPFTLLAFN 102 (390)
Q Consensus 84 ~l~~~~~~~~i~~~~~~~~ 102 (390)
..+.+.+...++..+...+
T Consensus 32 ~~~l~i~~~~ls~~l~~~a 50 (137)
T 2i68_A 32 PSVGTIICYCASFWLLAQT 50 (137)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 17
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=22.22 E-value=18 Score=17.39 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=7.3
Q ss_pred ccccCCchHH
Q 016418 76 ADEYGRKPLL 85 (390)
Q Consensus 76 ~Dr~Grk~~l 85 (390)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788888654
Done!