BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016420
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 145/373 (38%), Gaps = 53/373 (14%)
Query: 17 DDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIR 76
DD + + ++ D +S L C RW I + R V +T T LS+ ++R
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYT-ATPDRLSRRFPNLR 76
Query: 77 SFHV-GRLLTRFQHL---NW--LSLSGCTELPDSGLNQLQNY------------------ 112
S + G+ +L NW TE+ ++ L QL++
Sbjct: 77 SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN-LRQLKSVHFRRMIVSDLDLDRLAKA 135
Query: 113 -GSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVG---LEILASTCSTLM 168
L+TL LD C T +GL I T C + ++ + + ++ L LA ++L
Sbjct: 136 RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195
Query: 169 RVN--LAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQL 226
+N + IS L +++ C L +V+ + +GF + L S
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255
Query: 227 G---PEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDES 283
PE + +V L L +S M G I FA +++ L+L + + E
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGLSYM-----GPNEMPILFPFAAQIRKLDL-LYALLETED 309
Query: 284 IVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRN----------LCD 333
+ + CP LE L + + G + C L++L + R + +
Sbjct: 310 HCTLIQKCPNLE--VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367
Query: 334 RGLQALRDGCKQL 346
RGL AL GC++L
Sbjct: 368 RGLIALAQGCQEL 380
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 40/236 (16%)
Query: 93 LSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNV 152
LS G E+P L + ++++ L L T++ ++I C +L + R +
Sbjct: 277 LSYMGPNEMP-----ILFPFAAQIRKLDLLYALLETEDHCTLIQK-CPNLEVLET-RNVI 329
Query: 153 TDVGLEILASTCSTLMRVNLAYCLH----------ISDCGLRALSQGCSQL-------TA 195
D GLE+LA C L R+ + +S GL AL+QGC +L +
Sbjct: 330 GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389
Query: 196 VRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFL-----NVSGMSS 250
+ S ++ N C L +D E E I + G+ L + +
Sbjct: 390 ITNESLESIGTYLKNLCDFRLVLLDRE------ERITDLPLDNGVRSLLIGCKKLRRFAF 443
Query: 251 TLNGGGLAAIGTGFATRLKTLNLR--MCRNVG--DESIVAIAKGCPLLEEWNLSLC 302
L GGL +G + + N+R + VG DE ++ ++GCP L++ + C
Sbjct: 444 YLRQGGLTDLGLSYIGQYSP-NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 88/395 (22%), Positives = 143/395 (36%), Gaps = 80/395 (20%)
Query: 9 KTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSL 68
K + P++ L +F ++ D S L C W +I+ CRR V + C ++
Sbjct: 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKV------FIGNCYAV 56
Query: 69 SQPIIDIRSFHVGRLL-----TRFQHLN------------WLSLSGCTE----------- 100
S P IR F R + F N W+ +
Sbjct: 57 S-PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM 115
Query: 101 -LPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVG--- 156
+ D L + + L L C + +GL+ IA C +L + L +V DV
Sbjct: 116 VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175
Query: 157 LEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSP-- 214
L T ++L+ +N++ CL S+ AL + ++ C + + N P
Sbjct: 176 LSHFPDTYTSLVSLNIS-CLA-SEVSFSALERLVTR--------CPNLKSLKLNRAVPLE 225
Query: 215 TLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGF---------- 264
LA + + QL G G + + SG+S L+G +GF
Sbjct: 226 KLATLLQRAPQLEELGTGGYTAEVRPDVY--SGLSVALSGCKELRCLSGFWDAVPAYLPA 283
Query: 265 ----ATRLKTLNLRMCRNVGDESIVAIAKGCPLLEE-WNLSLCHEVRFPGWASVGLNCNN 319
+RL TLNL V +V + CP L+ W L + G + C +
Sbjct: 284 VYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDYIEDA---GLEVLASTCKD 339
Query: 320 LEKLHVNRCRN--------LCDRGLQALRDGCKQL 346
L +L V L ++GL ++ GC +L
Sbjct: 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 152 VTDVGLEILASTCSTL------------MRVNLAYCLHISDCGLRALSQGCSQLTAVRTS 199
+ D GLE+LASTC L M N+A +++ GL ++S GC +L +V
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA----LTEQGLVSVSMGCPKLESV-LY 379
Query: 200 SCRTVTGIGF 209
CR +T
Sbjct: 380 FCRQMTNAAL 389
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 128 TDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDC--GLRA 185
TD I T + +S+ +D+G+ + S C +L + L I DC G +A
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK------LEIRDCPFGDKA 497
Query: 186 LSQGCSQLTAVRT---SSCRTVTGIGFNGCS 213
L S+L +R+ SSC + F C
Sbjct: 498 LLANASKLETMRSLWMSSC----SVSFGACK 524
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query: 68 LSQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQI 127
LS PI++ L + +L L+LSGC+ + L L + S+L L L CF
Sbjct: 130 LSDPIVNT--------LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181
Query: 128 TDNGLSV-IATGCSSLTSISL--YRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLR 184
T+ + V +A ++T ++L YR N+ L L C L+ ++L+ + + + +
Sbjct: 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241
Query: 185 ALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLN 244
Q + L + S C + P E L + GIV G L+ L
Sbjct: 242 EFFQ-LNYLQHLSLSRCYDII--------PETLLELGEIPTLKTLQVFGIVPDGTLQLLK 292
Query: 245 VSGMSSTLNGGGLAAIG 261
+ +N I
Sbjct: 293 EALPHLQINCSHFTTIA 309
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 102 PDSGLNQ-LQNYGSKLQTLYLDCCFQITD-NGLSVIATGCSSLTSISLYRCNVTDVGLEI 159
P S ++Q L + S + ++D + + + L I + CS L ++SL ++D +
Sbjct: 78 PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137
Query: 160 LASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVT 205
LA S L+R+NL+ C S+ L+ L CS+L + S C T
Sbjct: 138 LAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query: 68 LSQPIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQI 127
LS PI++ L + +L L+LSGC+ + L L + S+L L L CF
Sbjct: 92 LSDPIVNT--------LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 143
Query: 128 TDNGLSV-IATGCSSLTSISL--YRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLR 184
T+ + V +A ++T ++L YR N+ L L C L+ ++L+ + + + +
Sbjct: 144 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 203
Query: 185 ALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLN 244
Q + L + S C + P E L + GIV G L+ L
Sbjct: 204 EFFQ-LNYLQHLSLSRCYDII--------PETLLELGEIPTLKTLQVFGIVPDGTLQLLK 254
Query: 245 VSGMSSTLNGGGLAAIG 261
+ +N I
Sbjct: 255 EALPHLQINCSHFTTIA 271
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 135 IATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLT 194
I + CS L ++SL ++D + LA S L+R+NL+ C S+ L+ L CS+L
Sbjct: 75 ILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLD 133
Query: 195 AVRTSSCRTVT 205
+ S C T
Sbjct: 134 ELNLSWCFDFT 144
>pdb|2VAW|A Chain A, Ftsz Pseudomonas Aeruginosa Gdp
Length = 394
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 176 LHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGP-EGIIGI 234
+ I+D G+RAL++ L + T+ G S A+ A+ G GI I
Sbjct: 144 MQIADEGIRALAESVDSLITIPNEKLLTILG---KDASLLAAFAKADDVLAGAVRGISDI 200
Query: 235 VSGGGLEFLNVSGMSSTLNGGGLAAIGTGFAT---RLKTLNLRMCRNVGDESIVAIAKGC 291
+ G+ ++ + + + ++ G+A +GTG A+ R + RN
Sbjct: 201 IKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRN------------- 247
Query: 292 PLLEEWNL 299
PLLE+ NL
Sbjct: 248 PLLEDVNL 255
>pdb|1OFU|A Chain A, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa
pdb|1OFU|B Chain B, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa
Length = 320
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 176 LHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGP-EGIIGI 234
+ I+D G+RAL++ L + T+ G S A+ A+ G GI I
Sbjct: 144 MQIADEGIRALAESVDSLITIPNEKLLTILG---KDASLLAAFAKADDVLAGAVRGISDI 200
Query: 235 VSGGGLEFLNVSGMSSTLNGGGLAAIGTGFAT---RLKTLNLRMCRNVGDESIVAIAKGC 291
+ G+ ++ + + + ++ G+A +GTG A+ R + RN
Sbjct: 201 IKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRN------------- 247
Query: 292 PLLEEWNL 299
PLLE+ NL
Sbjct: 248 PLLEDVNL 255
>pdb|1UMY|A Chain A, Bhmt From Rat Liver
pdb|1UMY|B Chain B, Bhmt From Rat Liver
pdb|1UMY|C Chain C, Bhmt From Rat Liver
pdb|1UMY|D Chain D, Bhmt From Rat Liver
Length = 407
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 122 DCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDC 181
+C ++ G +++ C S SL + GLE A + LM LAY H DC
Sbjct: 200 ECAVRLVKAGAAIVGVNCHFDPSTSLQTIKLMKEGLEA-ARLKAYLMSQPLAY--HTPDC 256
Query: 182 G 182
G
Sbjct: 257 G 257
>pdb|1OK3|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK3|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator
Length = 254
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 42 RWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLL 84
+W DI+ C RS + T + +SL QP I F VG ++
Sbjct: 54 QWSDIEEFCNRSCEVP---TRLNSASLKQPYITQNYFPVGTVV 93
>pdb|1OJV|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJV|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|C Chain C, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|D Chain D, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|3J24|B Chain B, Cryoem Reconstruction Of Complement Decay-Accelerating
Factor
Length = 254
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 42 RWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLL 84
+W DI+ C RS + T + +SL QP I F VG ++
Sbjct: 54 QWSDIEEFCNRSCEVP---TRLNSASLKQPYITQNYFPVGTVV 93
>pdb|2C8I|E Chain E, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
Its Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 316
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 38 LTCHRWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLL 84
L +W DI+ C RS + T + +SL QP I F VG ++
Sbjct: 113 LKGSQWSDIEEFCNRSCEVP---TRLNSASLKQPYITQNYFPVGTVV 156
>pdb|3IYP|F Chain F, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
Length = 381
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 42 RWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLL 84
+W DI+ C RS + T + +SL QP I F VG ++
Sbjct: 86 QWSDIEEFCNRSCEVP---TRLNSASLKQPYITQNYFPVGTVV 125
>pdb|1M11|R Chain R, Structural Model Of Human Decay-accelerating Factor
Bound To Echovirus 7 From Cryo-electron Microscopy
Length = 243
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 42 RWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLL 84
+W DI+ C RS + T + +SL QP I F VG ++
Sbjct: 52 QWSDIEEFCNRSCEVP---TRLNSASLKQPYITQNYFPVGTVV 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,352,518
Number of Sequences: 62578
Number of extensions: 448233
Number of successful extensions: 1131
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 33
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)