Query 016420
Match_columns 390
No_of_seqs 243 out of 2939
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 06:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2.6E-36 5.7E-41 253.5 9.6 371 11-386 71-467 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 2E-27 4.4E-32 191.8 13.3 297 11-379 97-395 (419)
3 KOG4341 F-box protein containi 99.9 1.8E-23 3.9E-28 176.6 5.7 295 77-375 126-430 (483)
4 cd00116 LRR_RI Leucine-rich re 99.7 3.1E-15 6.7E-20 132.3 22.5 148 214-368 137-300 (319)
5 cd00116 LRR_RI Leucine-rich re 99.6 3.3E-14 7E-19 125.8 20.9 265 80-353 15-316 (319)
6 KOG1909 Ran GTPase-activating 99.6 7E-15 1.5E-19 122.3 14.3 279 77-373 19-327 (382)
7 KOG1947 Leucine rich repeat pr 99.6 1.1E-14 2.3E-19 136.6 11.4 264 81-369 181-451 (482)
8 KOG2120 SCF ubiquitin ligase, 99.6 8.2E-15 1.8E-19 119.4 7.0 206 88-348 185-391 (419)
9 PLN00113 leucine-rich repeat r 99.5 6.1E-14 1.3E-18 142.2 14.5 207 82-302 87-294 (968)
10 PLN00113 leucine-rich repeat r 99.5 1.4E-13 3E-18 139.5 13.5 159 81-248 111-270 (968)
11 KOG1947 Leucine rich repeat pr 99.4 4.3E-13 9.3E-18 125.8 10.9 247 80-351 206-459 (482)
12 KOG4194 Membrane glycoprotein 99.4 7.5E-14 1.6E-18 123.8 0.4 183 83-277 97-280 (873)
13 KOG4194 Membrane glycoprotein 99.4 4.4E-14 9.6E-19 125.3 -1.3 154 114-277 173-328 (873)
14 KOG1909 Ran GTPase-activating 99.3 2E-11 4.4E-16 102.0 11.6 241 110-367 26-291 (382)
15 PLN03210 Resistant to P. syrin 99.2 4.3E-11 9.4E-16 122.2 10.1 247 84-359 630-907 (1153)
16 KOG3207 Beta-tubulin folding c 99.2 8.4E-12 1.8E-16 107.2 4.1 213 85-301 118-335 (505)
17 PLN03210 Resistant to P. syrin 99.2 2.7E-10 5.9E-15 116.4 12.8 225 112-360 632-884 (1153)
18 KOG3207 Beta-tubulin folding c 99.1 3.5E-11 7.7E-16 103.5 4.8 182 141-328 122-311 (505)
19 PF12937 F-box-like: F-box-lik 99.0 1.9E-10 4.2E-15 69.3 2.0 36 12-48 1-36 (47)
20 KOG0444 Cytoskeletal regulator 98.9 1.7E-10 3.7E-15 103.9 -1.5 36 317-359 244-281 (1255)
21 KOG0444 Cytoskeletal regulator 98.9 9.6E-11 2.1E-15 105.5 -4.0 38 317-358 338-375 (1255)
22 KOG3665 ZYG-1-like serine/thre 98.8 1.9E-08 4.1E-13 96.0 9.4 158 140-300 122-283 (699)
23 COG5238 RNA1 Ran GTPase-activa 98.8 1.1E-07 2.4E-12 77.4 11.1 273 86-377 28-336 (388)
24 KOG3665 ZYG-1-like serine/thre 98.7 5.9E-08 1.3E-12 92.6 8.3 152 88-244 122-281 (699)
25 PRK15387 E3 ubiquitin-protein 98.7 6.1E-08 1.3E-12 93.1 7.7 84 266-366 382-465 (788)
26 KOG2982 Uncharacterized conser 98.6 2.6E-08 5.7E-13 82.0 3.9 94 105-201 62-156 (418)
27 PF00646 F-box: F-box domain; 98.6 1.1E-08 2.4E-13 62.0 -0.0 37 11-48 2-38 (48)
28 KOG0618 Serine/threonine phosp 98.5 9.7E-09 2.1E-13 96.7 -1.3 130 213-356 358-487 (1081)
29 KOG3864 Uncharacterized conser 98.5 1.2E-07 2.6E-12 73.8 4.4 110 267-380 102-213 (221)
30 KOG2982 Uncharacterized conser 98.5 4.1E-07 8.9E-12 75.1 6.4 226 116-350 47-285 (418)
31 PF14580 LRR_9: Leucine-rich r 98.4 2.9E-07 6.3E-12 72.1 4.3 34 265-299 112-147 (175)
32 smart00256 FBOX A Receptor for 98.4 1.9E-07 4.2E-12 54.4 2.3 33 15-48 1-33 (41)
33 PF14580 LRR_9: Leucine-rich r 98.4 2.4E-07 5.2E-12 72.6 3.0 86 264-353 62-149 (175)
34 PRK15370 E3 ubiquitin-protein 98.3 5.6E-06 1.2E-10 80.2 11.4 111 238-368 325-437 (754)
35 COG5238 RNA1 Ran GTPase-activa 98.3 1E-05 2.2E-10 66.3 10.1 116 235-353 154-281 (388)
36 KOG1259 Nischarin, modulator o 98.2 1.1E-06 2.3E-11 72.9 3.3 225 106-353 174-408 (490)
37 PRK15387 E3 ubiquitin-protein 98.2 6.8E-06 1.5E-10 79.4 8.1 115 88-227 201-315 (788)
38 KOG0618 Serine/threonine phosp 98.0 3.6E-06 7.8E-11 80.0 2.8 92 264-366 381-472 (1081)
39 KOG3864 Uncharacterized conser 97.9 1.8E-05 3.9E-10 62.0 5.1 85 264-349 123-209 (221)
40 PRK15370 E3 ubiquitin-protein 97.9 6.3E-05 1.4E-09 73.1 9.4 110 213-339 324-435 (754)
41 KOG1259 Nischarin, modulator o 97.8 2.1E-06 4.6E-11 71.2 -1.4 48 78-125 172-225 (490)
42 KOG4237 Extracellular matrix p 97.7 1E-05 2.2E-10 69.7 0.1 87 111-202 88-175 (498)
43 KOG4237 Extracellular matrix p 97.6 7.3E-06 1.6E-10 70.6 -1.1 130 114-248 67-198 (498)
44 KOG4658 Apoptotic ATPase [Sign 97.6 1.7E-05 3.6E-10 78.3 1.0 85 111-201 568-652 (889)
45 KOG1859 Leucine-rich repeat pr 97.4 3.1E-05 6.7E-10 72.1 -0.9 187 77-277 73-290 (1096)
46 KOG4658 Apoptotic ATPase [Sign 97.4 0.00016 3.4E-09 71.6 3.8 129 112-245 543-675 (889)
47 KOG0617 Ras suppressor protein 97.4 3.3E-06 7.1E-11 64.2 -6.0 14 264-277 100-113 (264)
48 smart00367 LRR_CC Leucine-rich 97.3 0.00032 7E-09 35.8 2.8 24 343-367 1-24 (26)
49 KOG4308 LRR-containing protein 97.2 9.6E-05 2.1E-09 68.0 0.9 42 320-364 264-308 (478)
50 PF13855 LRR_8: Leucine rich r 97.2 0.00027 5.9E-09 45.1 2.1 12 265-276 48-59 (61)
51 KOG1859 Leucine-rich repeat pr 97.2 3.7E-05 8E-10 71.6 -2.7 102 237-353 186-288 (1096)
52 smart00367 LRR_CC Leucine-rich 97.1 0.0006 1.3E-08 34.8 2.4 24 317-340 1-24 (26)
53 PF13855 LRR_8: Leucine rich r 97.0 0.00058 1.3E-08 43.5 2.7 58 191-248 1-59 (61)
54 PLN03215 ascorbic acid mannose 97.0 0.00047 1E-08 60.6 2.8 40 10-49 2-41 (373)
55 KOG4308 LRR-containing protein 97.0 0.00025 5.3E-09 65.3 0.8 192 116-313 89-310 (478)
56 KOG2123 Uncharacterized conser 96.6 0.00076 1.7E-08 55.8 0.7 102 88-197 19-123 (388)
57 KOG0617 Ras suppressor protein 96.5 8.7E-05 1.9E-09 56.6 -4.4 33 139-173 55-87 (264)
58 PRK15386 type III secretion pr 96.3 0.0081 1.7E-07 53.7 5.7 138 84-248 48-187 (426)
59 KOG0472 Leucine-rich repeat pr 96.3 2.9E-05 6.2E-10 67.2 -9.1 242 84-353 64-306 (565)
60 PF12799 LRR_4: Leucine Rich r 96.3 0.0051 1.1E-07 36.0 3.0 37 318-359 1-37 (44)
61 PLN03150 hypothetical protein; 96.2 0.015 3.3E-07 56.2 7.6 107 216-329 420-526 (623)
62 KOG1644 U2-associated snRNP A' 96.2 0.0057 1.2E-07 48.4 3.4 34 214-247 64-97 (233)
63 KOG2739 Leucine-rich acidic nu 96.1 0.0013 2.8E-08 54.0 -0.3 90 112-202 63-154 (260)
64 KOG2123 Uncharacterized conser 96.1 0.0018 3.9E-08 53.7 0.4 102 166-272 20-123 (388)
65 KOG1644 U2-associated snRNP A' 96.0 0.0078 1.7E-07 47.6 3.6 102 114-223 42-149 (233)
66 KOG0281 Beta-TrCP (transducin 95.9 0.0043 9.2E-08 52.7 1.8 39 8-47 71-113 (499)
67 KOG2997 F-box protein FBX9 [Ge 95.8 0.0045 9.9E-08 52.1 1.7 37 11-48 106-147 (366)
68 PRK15386 type III secretion pr 95.6 0.034 7.3E-07 49.9 6.2 171 162-366 49-221 (426)
69 PLN03150 hypothetical protein; 95.4 0.05 1.1E-06 52.7 7.4 87 212-303 440-526 (623)
70 PF13516 LRR_6: Leucine Rich r 95.2 0.02 4.3E-07 28.4 2.2 21 140-160 2-22 (24)
71 COG4886 Leucine-rich repeat (L 95.2 0.022 4.8E-07 52.0 4.0 33 265-301 254-286 (394)
72 KOG0472 Leucine-rich repeat pr 94.9 0.017 3.7E-07 50.7 2.3 37 264-303 503-539 (565)
73 KOG2739 Leucine-rich acidic nu 94.9 0.017 3.7E-07 47.6 2.0 88 86-174 63-152 (260)
74 PF12799 LRR_4: Leucine Rich r 94.8 0.054 1.2E-06 31.6 3.6 33 215-248 2-34 (44)
75 COG4886 Leucine-rich repeat (L 94.6 0.039 8.4E-07 50.4 3.9 171 140-328 116-287 (394)
76 PF13516 LRR_6: Leucine Rich r 93.9 0.055 1.2E-06 26.7 2.0 21 318-339 2-22 (24)
77 PF13013 F-box-like_2: F-box-l 93.1 0.09 1.9E-06 37.5 2.7 30 11-41 21-50 (109)
78 smart00368 LRR_RI Leucine rich 92.0 0.22 4.8E-06 25.7 2.6 22 140-161 2-23 (28)
79 KOG0531 Protein phosphatase 1, 91.2 0.047 1E-06 50.2 -0.8 102 139-248 71-172 (414)
80 smart00368 LRR_RI Leucine rich 90.5 0.38 8.3E-06 24.8 2.6 21 319-340 3-23 (28)
81 KOG0531 Protein phosphatase 1, 89.4 0.095 2.1E-06 48.2 -0.3 102 213-328 94-196 (414)
82 KOG4579 Leucine-rich repeat (L 89.3 0.095 2.1E-06 39.0 -0.3 103 216-328 29-133 (177)
83 KOG4579 Leucine-rich repeat (L 89.3 0.074 1.6E-06 39.5 -0.9 37 213-250 76-112 (177)
84 KOG0274 Cdc4 and related F-box 87.7 0.19 4E-06 47.5 0.4 41 7-48 103-143 (537)
85 KOG3763 mRNA export factor TAP 86.4 1.6 3.4E-05 40.5 5.4 90 106-197 210-307 (585)
86 KOG3763 mRNA export factor TAP 85.1 2.1 4.5E-05 39.8 5.5 39 290-328 216-254 (585)
87 PF13504 LRR_7: Leucine rich r 83.1 0.95 2.1E-05 20.1 1.4 10 141-150 2-11 (17)
88 PF09372 PRANC: PRANC domain; 80.4 1.1 2.3E-05 31.5 1.6 26 9-35 69-94 (97)
89 PF13306 LRR_5: Leucine rich r 78.6 1.2 2.6E-05 33.0 1.4 8 267-274 104-111 (129)
90 PF07723 LRR_2: Leucine Rich R 68.8 3.9 8.4E-05 20.6 1.4 23 142-164 2-25 (26)
91 PF00560 LRR_1: Leucine Rich R 64.5 4.1 8.9E-05 19.4 1.0 13 141-153 1-13 (22)
92 KOG3926 F-box proteins [Amino 64.4 8.2 0.00018 32.4 3.2 39 8-46 198-236 (332)
93 KOG3735 Tropomodulin and leiom 58.8 45 0.00097 29.3 6.7 98 77-174 187-292 (353)
94 PF13306 LRR_5: Leucine rich r 58.3 26 0.00056 25.6 5.0 9 291-299 80-88 (129)
95 KOG2502 Tub family proteins [G 54.0 11 0.00023 33.0 2.4 38 10-47 43-87 (355)
96 KOG3735 Tropomodulin and leiom 52.6 44 0.00095 29.4 5.7 86 105-191 189-280 (353)
97 smart00369 LRR_TYP Leucine-ric 50.5 13 0.00029 18.3 1.6 11 140-150 2-12 (26)
98 smart00370 LRR Leucine-rich re 50.5 13 0.00029 18.3 1.6 11 140-150 2-12 (26)
99 KOG0532 Leucine-rich repeat (L 36.9 10 0.00022 35.8 -0.3 36 193-228 213-248 (722)
100 PF03382 DUF285: Mycoplasma pr 36.2 26 0.00056 25.7 1.8 15 133-148 54-68 (120)
101 KOG0532 Leucine-rich repeat (L 31.5 16 0.00036 34.5 0.1 14 264-277 232-245 (722)
102 smart00365 LRR_SD22 Leucine-ri 29.2 47 0.001 16.7 1.5 10 344-353 2-11 (26)
103 smart00364 LRR_BAC Leucine-ric 25.8 44 0.00095 16.9 1.0 13 214-226 2-14 (26)
104 PF01827 FTH: FTH domain; Int 24.7 2.8E+02 0.006 20.5 5.9 11 317-327 67-77 (142)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=253.45 Aligned_cols=371 Identities=23% Similarity=0.374 Sum_probs=278.7
Q ss_pred cCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhccc--ccccee---eecccc-----------cccccCCCCcchh
Q 016420 11 SIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNL--CRRSVQ---FQCSFT-----------LITCSSLSQPIID 74 (390)
Q Consensus 11 ~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~~--~~~~~~---~~~~~~-----------~~~~~~l~~~~~~ 74 (390)
....||+|++..||++|+. ..+.+++++|+.|+..+.. .|-.+. +..+.. ...+..+..++..
T Consensus 71 ~~~~LPpEl~lkvFS~LDt-ksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r 149 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDT-KSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCR 149 (483)
T ss_pred ccccCCHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccc
Confidence 3457999999999999997 7888889999999986421 111111 111100 1112233333322
Q ss_pred -hhhhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-cc
Q 016420 75 -IRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NV 152 (390)
Q Consensus 75 -~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~ 152 (390)
+....+..+...+|++++|.+.+|..+++..+..+++.|++|++|++..|..+++..+..+.+.|++|+.|+++.| .+
T Consensus 150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 2344555666777888888888888888877778888888888888888777788777777778888888888888 77
Q ss_pred ChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCccccc---ccCCCCCeEEeeccC-CCh
Q 016420 153 TDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFN---GCSPTLAYIDAESCQ-LGP 228 (390)
Q Consensus 153 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~-~~~ 228 (390)
+..+++.+.+++.+++.+...+|...+.+.+..+..+++.+..+++..|..+++..+. ..+..|+.|..+++. +.+
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 7777777777777777777777777777777777777777777777777777765542 223467888887765 666
Q ss_pred hhHHhhh-cCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCCh
Q 016420 229 EGIIGIV-SGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRF 307 (390)
Q Consensus 229 ~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 307 (390)
..+..+. ..++|+.|.+.++.. .++.++..++. .++.|+.+++..|..+.+..+..+..+||.|+.|.+++|..++|
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~c~~-fsd~~ft~l~r-n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSGCQQ-FSDRGFTMLGR-NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred HHHHHHhcCCCceEEEeccccch-hhhhhhhhhhc-CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 6666663 457888888888865 45566665554 47888889888888777777888888899999999998888888
Q ss_pred hHHHHHhh---cCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCChHHHHHHHhhcCceeEeecceeeeC
Q 016420 308 PGWASVGL---NCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVDIKDEEVMCIG 384 (390)
Q Consensus 308 ~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~~l~~~~~~l~~~~~~~~~~~ 384 (390)
+++..+.. ....|+.+.+.+|+.+++..++.+. .|++|+.+++.+ |..++++++..++.++|++++..+......
T Consensus 388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~-~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~ 465 (483)
T KOG4341|consen 388 EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELID-CQDVTKEAISRFATHLPNIKVHAYFAPVTP 465 (483)
T ss_pred hhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeec-hhhhhhhhhHHHHhhCccceehhhccCCCC
Confidence 88777753 3468888889999888888777776 799999999999 999999999999999999999999988887
Q ss_pred Cc
Q 016420 385 PD 386 (390)
Q Consensus 385 ~~ 386 (390)
|.
T Consensus 466 p~ 467 (483)
T KOG4341|consen 466 PG 467 (483)
T ss_pred cc
Confidence 75
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-27 Score=191.78 Aligned_cols=297 Identities=25% Similarity=0.313 Sum_probs=213.1
Q ss_pred cCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhccccccceeeecccccccccCCCCcchhhhhhHHHHHHhhCCCc
Q 016420 11 SIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLLTRFQHL 90 (390)
Q Consensus 11 ~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~L 90 (390)
.|+.||||++..||+.|+- +++..++.||||||+++...+.|.+..... ++ .....+.++.++ .+
T Consensus 97 ~~~slpDEill~IFs~L~k-k~LL~~~~VC~Rfyr~~~de~lW~~lDl~~--r~----------i~p~~l~~l~~r--gV 161 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCK-KELLKVSGVCKRFYRLASDESLWQTLDLTG--RN----------IHPDVLGRLLSR--GV 161 (419)
T ss_pred CcccCCHHHHHHHHHhccH-HHHHHHHHHHHHHhhccccccceeeeccCC--Cc----------cChhHHHHHHhC--Ce
Confidence 4899999999999999995 888889999999999986655444443221 11 123334444332 33
Q ss_pred cEEEecCCCCCChhHHH-HHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccce
Q 016420 91 NWLSLSGCTELPDSGLN-QLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMR 169 (390)
Q Consensus 91 ~~L~l~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 169 (390)
..+.+.. ....++.+. ....+-+.|++|+++... ++...+..+...|.+|+.|.+.+..+++.....+++ ..+|+.
T Consensus 162 ~v~Rlar-~~~~~prlae~~~~frsRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~ 238 (419)
T KOG2120|consen 162 IVFRLAR-SFMDQPRLAEHFSPFRSRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVR 238 (419)
T ss_pred EEEEcch-hhhcCchhhhhhhhhhhhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-ccccee
Confidence 3444432 122232222 222233579999999854 888888888999999999999999888887777776 678999
Q ss_pred eeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCc
Q 016420 170 VNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMS 249 (390)
Q Consensus 170 L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 249 (390)
|+++.|.+++..+..-+...|..|..|+++.|....+.
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~------------------------------------------ 276 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK------------------------------------------ 276 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchh------------------------------------------
Confidence 99999999999999888888998888888776533221
Q ss_pred cccccchhHhhhhccCCCccEEecCCCCC-CChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccc
Q 016420 250 STLNGGGLAAIGTGFATRLKTLNLRMCRN-VGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
+..+.....++|+.|+++|+.. +.+..+..+.+.||+|..|+|+.|..+++..+..+. .++.|++|.++.|
T Consensus 277 -------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 277 -------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRC 348 (419)
T ss_pred -------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhh
Confidence 1111112356677777777642 344456677788899999999988888885555544 5889999999998
Q ss_pred cccCchHHHHHHHcCCCCceeeccccCCcCChHHHHHHHhhcCceeEeecc
Q 016420 329 RNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVDIKDEE 379 (390)
Q Consensus 329 ~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~~l~~~~~~l~~~~~~ 379 (390)
..|..+.+.++- ..|.|.+|++.| | +++..++.+.+++|++++....
T Consensus 349 Y~i~p~~~~~l~-s~psl~yLdv~g-~--vsdt~mel~~e~~~~lkin~q~ 395 (419)
T KOG2120|consen 349 YDIIPETLLELN-SKPSLVYLDVFG-C--VSDTTMELLKEMLSHLKINCQH 395 (419)
T ss_pred cCCChHHeeeec-cCcceEEEEecc-c--cCchHHHHHHHhCcccccccee
Confidence 878776666555 578999999988 7 7888899999999988776533
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.88 E-value=1.8e-23 Score=176.56 Aligned_cols=295 Identities=26% Similarity=0.456 Sum_probs=253.9
Q ss_pred hhHHHHHHhhC-CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-ccCh
Q 016420 77 SFHVGRLLTRF-QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NVTD 154 (390)
Q Consensus 77 ~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~ 154 (390)
...+..+..++ ..|+.|.+.|+....+..+..+...|+++++|.+.+|.++++..+..+.+.|++|++|++..| .+++
T Consensus 126 g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 126 GGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred CcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 34455555555 478999999999999999999999999999999999999999999999999999999999998 8899
Q ss_pred HHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCccccc---ccCCCCCeEEeeccC-CChhh
Q 016420 155 VGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFN---GCSPTLAYIDAESCQ-LGPEG 230 (390)
Q Consensus 155 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~-~~~~~ 230 (390)
..+..+.+.|++|++|++++|+.++..++..+.+.+..++.+...+|.......+. ...+.+.++++..|. +++..
T Consensus 206 ~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 206 VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED 285 (483)
T ss_pred HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH
Confidence 99999999999999999999999999999999999999999988888877765553 334567777776665 78888
Q ss_pred HHhhhc-CCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhH
Q 016420 231 IIGIVS-GGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPG 309 (390)
Q Consensus 231 ~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 309 (390)
...+.. +..|+.|+.+++.. .++..+.++.. .+++|+.|.+.+|.++++.++..+.++++.|+.+++..|..+++..
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~-~~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTD-ITDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCC-CchHHHHHHhc-CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence 777744 56899999999866 56666666655 4899999999999999999999999999999999999999889999
Q ss_pred HHHHhhcCCCCCeEEcccccccCchHHHHHHH---cCCCCceeeccccCCcCChHHHHHHHhhcCceeE
Q 016420 310 WASVGLNCNNLEKLHVNRCRNLCDRGLQALRD---GCKQLLILYANKKNSRVSSTAWELFKMYRGNVDI 375 (390)
Q Consensus 310 ~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~c~~l~~~~~~~l~~~~~~l~~ 375 (390)
+..++.+|+.||+|.+++|..|+|+++..+.. +...|+.+++++ |+.+++..++.+. .|++++-
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n-~p~i~d~~Le~l~-~c~~Ler 430 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN-CPLITDATLEHLS-ICRNLER 430 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC-CCCchHHHHHHHh-hCcccce
Confidence 99999999999999999999999998887753 457899999999 9999999999885 5777654
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=3.1e-15 Score=132.33 Aligned_cols=148 Identities=20% Similarity=0.203 Sum_probs=94.6
Q ss_pred CCCCeEEeeccCCChhhHH----hhhcCCCccEEEecCCccccccchhHhh--hhccCCCccEEecCCCCCCChHHHHHH
Q 016420 214 PTLAYIDAESCQLGPEGII----GIVSGGGLEFLNVSGMSSTLNGGGLAAI--GTGFATRLKTLNLRMCRNVGDESIVAI 287 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l 287 (390)
++|+.|++++|.+...... .+...++|++|+++++... +.++..+ .....++|++|++++|. +++.....+
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l 213 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG--DAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASAL 213 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc--hHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHH
Confidence 5566666666665533222 2344566777777665422 2222222 12335688888888886 776654433
Q ss_pred ---HhcCCCCceeecccccCCChhHHHHHhhcC----CCCCeEEcccccccCchHHHHHH---HcCCCCceeeccccCCc
Q 016420 288 ---AKGCPLLEEWNLSLCHEVRFPGWASVGLNC----NNLEKLHVNRCRNLCDRGLQALR---DGCKQLLILYANKKNSR 357 (390)
Q Consensus 288 ---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~~~c~~ 357 (390)
...+++|+.|++++| .+++.++..+...+ ++|++|++.+| .+++.+...+. ..+++|+.+++++ +.
T Consensus 214 ~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~--N~ 289 (319)
T cd00116 214 AETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRG--NK 289 (319)
T ss_pred HHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCC--CC
Confidence 345678888988886 47776766666543 68999999888 67766555443 3456788899988 88
Q ss_pred CChHHHHHHHh
Q 016420 358 VSSTAWELFKM 368 (390)
Q Consensus 358 l~~~~~~~l~~ 368 (390)
+++++...+.+
T Consensus 290 l~~~~~~~~~~ 300 (319)
T cd00116 290 FGEEGAQLLAE 300 (319)
T ss_pred CcHHHHHHHHH
Confidence 88877666553
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=3.3e-14 Score=125.80 Aligned_cols=265 Identities=22% Similarity=0.225 Sum_probs=179.3
Q ss_pred HHHHHhhCCCccEEEecCCCCCChhHHHHH---HHcCCCccEEEcCCCCCCC--hHHHH---HHHHhCCCCCeEEecccc
Q 016420 80 VGRLLTRFQHLNWLSLSGCTELPDSGLNQL---QNYGSKLQTLYLDCCFQIT--DNGLS---VIATGCSSLTSISLYRCN 151 (390)
Q Consensus 80 l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~--~~~~~---~l~~~~~~L~~L~l~~~~ 151 (390)
+..++...++|+.++++++. +++.....+ ....+++++++++++. +. ...+. .....+++|+.|++++|.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred hHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 44556666779999999764 544443333 3455779999998865 33 22222 223347799999999986
Q ss_pred cChH---HHHHHHhcCcccceeeccCCCCCCHHHHHHHH---HcC-CCCCEEeccccCccCc--ccc---cccCCCCCeE
Q 016420 152 VTDV---GLEILASTCSTLMRVNLAYCLHISDCGLRALS---QGC-SQLTAVRTSSCRTVTG--IGF---NGCSPTLAYI 219 (390)
Q Consensus 152 ~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~---~~~-~~L~~L~l~~~~~~~~--~~~---~~~~~~L~~L 219 (390)
+... .+..+... ++|++|+++++. +++.+...+. ..+ ++|+.|++.+|..... ..+ ....++|++|
T Consensus 93 ~~~~~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 93 LGPDGCGVLESLLRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170 (319)
T ss_pred CChhHHHHHHHHhcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence 6533 33344444 669999998875 6655554433 335 8899999998874421 111 2233589999
Q ss_pred EeeccCCChhhHHh----hhcCCCccEEEecCCccccccchhHhh--hhccCCCccEEecCCCCCCChHHHHHHHhcC--
Q 016420 220 DAESCQLGPEGIIG----IVSGGGLEFLNVSGMSSTLNGGGLAAI--GTGFATRLKTLNLRMCRNVGDESIVAIAKGC-- 291 (390)
Q Consensus 220 ~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-- 291 (390)
++++|.+.+..... +...++|+.|+++++... +.+...+ ....+++|++|++++|. +++..+..+...+
T Consensus 171 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~ 247 (319)
T cd00116 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT--DEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLS 247 (319)
T ss_pred ECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC--hHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhc
Confidence 99999988655443 445679999999887532 2222222 23457899999999997 8887777766554
Q ss_pred --CCCceeecccccCCChhHHHHHh---hcCCCCCeEEcccccccCchHHHHHHH---cC-CCCceeeccc
Q 016420 292 --PLLEEWNLSLCHEVRFPGWASVG---LNCNNLEKLHVNRCRNLCDRGLQALRD---GC-KQLLILYANK 353 (390)
Q Consensus 292 --~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~-~~L~~L~l~~ 353 (390)
+.|+.|++.+| .+++.+...+. ..+++|+.++++++ .+++++...+.+ .. +.|+.+++.+
T Consensus 248 ~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 248 PNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred cCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 78999999997 47665655554 44578999999998 688776655543 22 5899998876
No 6
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.64 E-value=7e-15 Score=122.33 Aligned_cols=279 Identities=22% Similarity=0.227 Sum_probs=191.0
Q ss_pred hhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHH---cCCCccEEEcCCCC--CCChHH------HHHHHHhCCCCCeE
Q 016420 77 SFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQN---YGSKLQTLYLDCCF--QITDNG------LSVIATGCSSLTSI 145 (390)
Q Consensus 77 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~--~~~~~~------~~~l~~~~~~L~~L 145 (390)
...+.........++.+++++. .+.......+++ .-++|+..+++... ...+.. +......||+|+.|
T Consensus 19 ~~~v~~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 19 EKDVEEELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred hhhHHHHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 4555666677889999999985 456666665544 33677777777532 111111 22233458899999
Q ss_pred EecccccChH---HHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEee
Q 016420 146 SLYRCNVTDV---GLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAE 222 (390)
Q Consensus 146 ~l~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 222 (390)
+|+.|-+... ++..+.+++..|++|.+.+|. ++..+-..+.+.+..|..... ...++.|+.+...
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk-----------~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKK-----------AASKPKLRVFICG 165 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhc-----------cCCCcceEEEEee
Confidence 9999966554 455667778999999998875 777777666654443332211 2234688888888
Q ss_pred ccCCChhhHHhh----hcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHH---hcCCCCc
Q 016420 223 SCQLGPEGIIGI----VSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIA---KGCPLLE 295 (390)
Q Consensus 223 ~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~ 295 (390)
.|++.+.+...+ ...+.|+.+.+..+........+...++.+|++|+.|+|..+. ++.++-..++ ..+|+|+
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchhe
Confidence 888766555443 4467888888877654333333334455679999999999988 7776654443 4567899
Q ss_pred eeecccccCCChhHHHHHh----hcCCCCCeEEcccccccCchHHHHHH---HcCCCCceeeccccCCcC--ChHHHHHH
Q 016420 296 EWNLSLCHEVRFPGWASVG----LNCNNLEKLHVNRCRNLCDRGLQALR---DGCKQLLILYANKKNSRV--SSTAWELF 366 (390)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~~~c~~l--~~~~~~~l 366 (390)
.|.+++|. +.+.|..++. ...|+|+.|.+.+| .|+.++...+. ...|.|+.|++++ +++ .+++++.+
T Consensus 245 El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLng--N~l~e~de~i~ei 320 (382)
T KOG1909|consen 245 ELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNG--NRLGEKDEGIDEI 320 (382)
T ss_pred eecccccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCc--ccccccchhHHHH
Confidence 99999995 6666655544 45689999999998 68866554443 3468999999999 777 77888888
Q ss_pred HhhcCce
Q 016420 367 KMYRGNV 373 (390)
Q Consensus 367 ~~~~~~l 373 (390)
...++..
T Consensus 321 ~~~~~~~ 327 (382)
T KOG1909|consen 321 ASKFDTA 327 (382)
T ss_pred HHhcccc
Confidence 7777543
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=136.58 Aligned_cols=264 Identities=30% Similarity=0.461 Sum_probs=149.0
Q ss_pred HHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCC-CCCCC--hHHHHHHHHhCCCCCeEEeccc-ccChHH
Q 016420 81 GRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDC-CFQIT--DNGLSVIATGCSSLTSISLYRC-NVTDVG 156 (390)
Q Consensus 81 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~--~~~~~~l~~~~~~L~~L~l~~~-~~~~~~ 156 (390)
..+...+++|+.+.+.++..+.+..+..+...+++|++|++++ +.... ......+...|++|++|++.++ .+++.+
T Consensus 181 ~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 181 LRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred HHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 3334445666666666666666555555666666666666665 22222 1222334455666666666666 366666
Q ss_pred HHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCccccc---ccCCCCCeEEeeccCCChhhHHh
Q 016420 157 LEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFN---GCSPTLAYIDAESCQLGPEGIIG 233 (390)
Q Consensus 157 ~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~ 233 (390)
+..+...|++|+.|.+.+|..+++.++..+...||.|++|++.+|..+.+.++. ..+++++.|.+....-
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------- 333 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------- 333 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------
Confidence 666666666666666666655666666666666666666666666655443321 1133333333222110
Q ss_pred hhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHH
Q 016420 234 IVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASV 313 (390)
Q Consensus 234 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 313 (390)
.+.++.+.+.++..... +.........+++++.+.+.++. ..+.+...+...||+| + .++...
T Consensus 334 ---c~~l~~~~l~~~~~~~~-d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l-----------~-~~l~~~ 396 (482)
T KOG1947|consen 334 ---CPSLTDLSLSGLLTLTS-DDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL-----------T-ESLELR 396 (482)
T ss_pred ---CccHHHHHHHHhhccCc-hhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc-----------c-hHHHHH
Confidence 11222222222111000 12222223345666666666655 4544444444444444 3 333333
Q ss_pred hhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCChHHHHHHHhh
Q 016420 314 GLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMY 369 (390)
Q Consensus 314 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~~l~~~ 369 (390)
...+.+++.|+++.|..+++..+......|..++.+++.+ |..++...+..+...
T Consensus 397 ~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 397 LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSG-CRVITLKSLEGFASN 451 (482)
T ss_pred hccCCccceEecccCccccccchHHHhhhhhccccCCccC-cccccchhhhhhhcc
Confidence 3334448999999998899988888776688999999999 999999888766554
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.2e-15 Score=119.37 Aligned_cols=206 Identities=25% Similarity=0.315 Sum_probs=154.0
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-ccChHHHHHHHhcCcc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NVTDVGLEILASTCST 166 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~ 166 (390)
..|+++||+. ..++...+..+...|.+|+.|++.+.. ++|.....+++ -.+|+.|+++.| .++..+++.+..+|..
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhh
Confidence 4688999995 568888888888899999999999954 77877777776 489999999999 8899999999999999
Q ss_pred cceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEec
Q 016420 167 LMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVS 246 (390)
Q Consensus 167 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 246 (390)
|..|++++|...++..-..+..--+.|+.|+++++... +
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l-------------------- 300 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------L-------------------- 300 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------h--------------------
Confidence 99999999975544422223332455666555554311 0
Q ss_pred CCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcc
Q 016420 247 GMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVN 326 (390)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 326 (390)
....+.. ....||+|.+|+++++..+++..+..+.+ ++.|++|.++.|..+....+..+.. .|.|.+|++.
T Consensus 301 ------~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~l~s-~psl~yLdv~ 371 (419)
T KOG2120|consen 301 ------QKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYDIIPETLLELNS-KPSLVYLDVF 371 (419)
T ss_pred ------hhhHHHH-HHHhCCceeeeccccccccCchHHHHHHh-cchheeeehhhhcCCChHHeeeecc-CcceEEEEec
Confidence 0111111 22358999999999988788877777766 8999999999998887777666653 6899999998
Q ss_pred cccccCchHHHHHHHcCCCCce
Q 016420 327 RCRNLCDRGLQALRDGCKQLLI 348 (390)
Q Consensus 327 ~~~~i~~~~~~~l~~~~~~L~~ 348 (390)
+| +.|..++.+.+.|++|+.
T Consensus 372 g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 372 GC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred cc--cCchHHHHHHHhCccccc
Confidence 87 677778877777888764
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.55 E-value=6.1e-14 Score=142.16 Aligned_cols=207 Identities=17% Similarity=0.047 Sum_probs=107.4
Q ss_pred HHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHH
Q 016420 82 RLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILA 161 (390)
Q Consensus 82 ~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~ 161 (390)
..+..+++|+.|+++++. +.......+...+++|++|+++++. +..... ...+++|++|++++|.++......+
T Consensus 87 ~~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~- 160 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIP---RGSIPNLETLDLSNNMLSGEIPNDI- 160 (968)
T ss_pred hHHhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCc-cccccC---ccccCCCCEEECcCCcccccCChHH-
Confidence 345678888999888653 3322222334456788888888764 221111 1235778888887775543222223
Q ss_pred hcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCeEEeeccCCChhhHHhhhcCCCc
Q 016420 162 STCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGL 240 (390)
Q Consensus 162 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 240 (390)
..+++|+.|+++++. +.......+. .+++|++|++.++..... .......++|+.|++++|.+....+..+..+++|
T Consensus 161 ~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 161 GSFSSLKVLDLGGNV-LVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred hcCCCCCEEECccCc-ccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 336777777777654 2221112222 367777777776653221 1112334566677776666655555556666666
Q ss_pred cEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccc
Q 016420 241 EFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLC 302 (390)
Q Consensus 241 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 302 (390)
++|++.++..... .+.....+++|+.|+++++. +.......+ ..+++|+.|++++|
T Consensus 239 ~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n 294 (968)
T PLN00113 239 NHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNK-LSGPIPPSI-FSLQKLISLDLSDN 294 (968)
T ss_pred CEEECcCceeccc----cChhHhCCCCCCEEECcCCe-eeccCchhH-hhccCcCEEECcCC
Confidence 6666665532110 00011234556666665554 322211122 12455555555544
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.51 E-value=1.4e-13 Score=139.54 Aligned_cols=159 Identities=17% Similarity=0.033 Sum_probs=85.8
Q ss_pred HHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHH
Q 016420 81 GRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEIL 160 (390)
Q Consensus 81 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l 160 (390)
..++..+++|++|+++++.. ... .+ ....++|++|+++++. +....... ...+++|+.|++++|.+.......+
T Consensus 111 ~~~~~~l~~L~~L~Ls~n~l-~~~-~p--~~~l~~L~~L~Ls~n~-~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 111 DDIFTTSSSLRYLNLSNNNF-TGS-IP--RGSIPNLETLDLSNNM-LSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred hHHhccCCCCCEEECcCCcc-ccc-cC--ccccCCCCEEECcCCc-ccccCChH-HhcCCCCCEEECccCcccccCChhh
Confidence 34555788999999986532 211 00 1234778888887764 32222222 2346778888887775443322233
Q ss_pred HhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCeEEeeccCCChhhHHhhhcCCC
Q 016420 161 ASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGG 239 (390)
Q Consensus 161 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 239 (390)
. .+++|+.|+++++. +.......+ ..+++|+.|++.++..... .......++|++|++++|.+....+..+..+++
T Consensus 185 ~-~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 185 T-NLTSLEFLTLASNQ-LVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred h-hCcCCCeeeccCCC-CcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 2 36677777776654 222111222 2366677777666543211 111233456666666666655555555566666
Q ss_pred ccEEEecCC
Q 016420 240 LEFLNVSGM 248 (390)
Q Consensus 240 L~~L~l~~~ 248 (390)
|+.|+++++
T Consensus 262 L~~L~L~~n 270 (968)
T PLN00113 262 LQYLFLYQN 270 (968)
T ss_pred CCEEECcCC
Confidence 666666554
No 11
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.45 E-value=4.3e-13 Score=125.76 Aligned_cols=247 Identities=30% Similarity=0.427 Sum_probs=183.9
Q ss_pred HHHHHhhCCCccEEEecC-CCCCC--hhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-ccChH
Q 016420 80 VGRLLTRFQHLNWLSLSG-CTELP--DSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NVTDV 155 (390)
Q Consensus 80 l~~~~~~~~~L~~L~l~~-~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~ 155 (390)
+..+...+++|+.|++++ +.... ......+...+++|+.|+++.+..+++.++..++..|++|++|.+.+| .+++.
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence 677888999999999987 22222 223444677889999999999988999999999999999999998888 58999
Q ss_pred HHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCC---hhhHH
Q 016420 156 GLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLG---PEGII 232 (390)
Q Consensus 156 ~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~ 232 (390)
++..+...+++|++|++++|..+++.++..+..+||+|+.|.+..+.. ++.++.+.+.++... .....
T Consensus 286 gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~ 356 (482)
T KOG1947|consen 286 GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAEL 356 (482)
T ss_pred HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHH
Confidence 999999999999999999999998999998888899999988766543 244555555544321 22223
Q ss_pred hhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHH
Q 016420 233 GIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWAS 312 (390)
Q Consensus 233 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 312 (390)
....+++++.+.+..+. . ...+ ..+.+.+|..++ +.+......+..++.|.+..|...++..+..
T Consensus 357 ~~~~~~~l~~~~l~~~~-~-~~~~------------~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~ 421 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCG-I-SDLG------------LELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRC 421 (482)
T ss_pred HHhcCCCcchhhhhhhh-c-cCcc------------hHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHH
Confidence 34567778777776653 1 1111 145566666665 5555555556669999999998889888888
Q ss_pred HhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeec
Q 016420 313 VGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYA 351 (390)
Q Consensus 313 l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l 351 (390)
....+..++.+++.++..++......+...+ ......+
T Consensus 422 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 459 (482)
T KOG1947|consen 422 LADSCSNLKDLDLSGCRVITLKSLEGFASNC-DLISLDV 459 (482)
T ss_pred HhhhhhccccCCccCcccccchhhhhhhccc-ccccccc
Confidence 8766788999999999888887776665544 4443333
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.37 E-value=7.5e-14 Score=123.85 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=106.1
Q ss_pred HHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHh
Q 016420 83 LLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILAS 162 (390)
Q Consensus 83 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 162 (390)
.+...++|+.+++... .++ .++.+.....+|+.|+|..+. ++...-..+. ..|.|++|+|+.|.++.-....+.+
T Consensus 97 ~f~nl~nLq~v~l~~N-~Lt--~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~-~l~alrslDLSrN~is~i~~~sfp~ 171 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKN-ELT--RIPRFGHESGHLEKLDLRHNL-ISSVTSEELS-ALPALRSLDLSRNLISEIPKPSFPA 171 (873)
T ss_pred HHhcCCcceeeeeccc-hhh--hcccccccccceeEEeeeccc-cccccHHHHH-hHhhhhhhhhhhchhhcccCCCCCC
Confidence 4566788888888753 222 233334445678888888753 4433333332 2577888888877554432222222
Q ss_pred cCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCccc-ccccCCCCCeEEeeccCCChhhHHhhhcCCCcc
Q 016420 163 TCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIG-FNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLE 241 (390)
Q Consensus 163 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 241 (390)
-++|++|++.++. +++-+...+.. +.+|..|.++.+....-.. .+...|.|+.|++..|.+.-.....+..+++|+
T Consensus 172 -~~ni~~L~La~N~-It~l~~~~F~~-lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 172 -KVNIKKLNLASNR-ITTLETGHFDS-LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred -CCCceEEeecccc-ccccccccccc-cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence 3578888887664 65544444333 5577777777765433222 233457788888888877666666667777777
Q ss_pred EEEecCCccccccchhHhhhhccCCCccEEecCCCC
Q 016420 242 FLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCR 277 (390)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (390)
.|.+..+......+|.. -.+.++++|+|..+.
T Consensus 249 nlklqrN~I~kL~DG~F----y~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAF----YGLEKMEHLNLETNR 280 (873)
T ss_pred hhhhhhcCcccccCcce----eeecccceeecccch
Confidence 77776554433333322 125666666666554
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.37 E-value=4.4e-14 Score=125.27 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=72.5
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQL 193 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 193 (390)
.++++|+|+++. ++.-....+ ..+.+|..|.|++|+++.-....+ +.+|+|+.|++..+. +....... .+.+++|
T Consensus 173 ~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrNrittLp~r~F-k~L~~L~~LdLnrN~-irive~lt-FqgL~Sl 247 (873)
T KOG4194|consen 173 VNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRNRITTLPQRSF-KRLPKLESLDLNRNR-IRIVEGLT-FQGLPSL 247 (873)
T ss_pred CCceEEeecccc-ccccccccc-cccchheeeecccCcccccCHHHh-hhcchhhhhhccccc-eeeehhhh-hcCchhh
Confidence 456666666542 332222211 123455666666665544333333 236666666665542 22211111 1235556
Q ss_pred CEEeccccCc--cCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEE
Q 016420 194 TAVRTSSCRT--VTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTL 271 (390)
Q Consensus 194 ~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 271 (390)
+.|.+..+.. +.+..|. -+.++++|++..|.+....-..+-.+..|+.|+++.+... .+..-.-..+++|+.|
T Consensus 248 ~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~----rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFY-GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ----RIHIDSWSFTQKLKEL 322 (873)
T ss_pred hhhhhhhcCcccccCccee-eecccceeecccchhhhhhcccccccchhhhhccchhhhh----eeecchhhhcccceeE
Confidence 6665544331 2222222 2346777777776665555555555666666666544211 1111112245666666
Q ss_pred ecCCCC
Q 016420 272 NLRMCR 277 (390)
Q Consensus 272 ~l~~~~ 277 (390)
+|+++.
T Consensus 323 dLs~N~ 328 (873)
T KOG4194|consen 323 DLSSNR 328 (873)
T ss_pred eccccc
Confidence 666654
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.32 E-value=2e-11 Score=102.00 Aligned_cols=241 Identities=18% Similarity=0.176 Sum_probs=153.1
Q ss_pred HHcCCCccEEEcCCCCCCChHHHHHHH---HhCCCCCeEEeccc---ccChHHHH------HHHhcCcccceeeccCCCC
Q 016420 110 QNYGSKLQTLYLDCCFQITDNGLSVIA---TGCSSLTSISLYRC---NVTDVGLE------ILASTCSTLMRVNLAYCLH 177 (390)
Q Consensus 110 ~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~---~~~~~~~~------~l~~~~~~L~~L~l~~~~~ 177 (390)
......++.++++++. +.......+. ..-++|+..+++.. +..+.... .....+|+|+.|+|+.+-
T Consensus 26 ~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA- 103 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA- 103 (382)
T ss_pred hcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-
Confidence 3445788999999865 5554444333 33467788777764 22222211 122347788888888764
Q ss_pred CCH---HHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCcccccc
Q 016420 178 ISD---CGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNG 254 (390)
Q Consensus 178 ~~~---~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 254 (390)
+.. .++..+.+.|..|++|.+.+|..-...+- .....|.+|. ........++|+.+....+......
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~-~l~~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG-RLGRALFELA---------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHH-HHHHHHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence 443 44556666677777777776653322111 0001111111 1112345678999988776544433
Q ss_pred chhHhhhhccCCCccEEecCCCCCCChHHHH---HHHhcCCCCceeecccccCCChhHHHHHh---hcCCCCCeEEcccc
Q 016420 255 GGLAAIGTGFATRLKTLNLRMCRNVGDESIV---AIAKGCPLLEEWNLSLCHEVRFPGWASVG---LNCNNLEKLHVNRC 328 (390)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~ 328 (390)
....+-.+...+.|+.+.+..+. |..++.. .-+..||+|+.|+|..+ .++..+-..++ +.+++|++|++++|
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc
Confidence 33333445567999999999887 7766653 33457999999999985 46655555554 45789999999999
Q ss_pred cccCchHHHHHHH----cCCCCceeeccccCCcCChHHHHHHH
Q 016420 329 RNLCDRGLQALRD----GCKQLLILYANKKNSRVSSTAWELFK 367 (390)
Q Consensus 329 ~~i~~~~~~~l~~----~~~~L~~L~l~~~c~~l~~~~~~~l~ 367 (390)
.+.+.|...+.. ..|+|++|.+.+ +.++.++...+.
T Consensus 252 -ll~~~Ga~a~~~al~~~~p~L~vl~l~g--NeIt~da~~~la 291 (382)
T KOG1909|consen 252 -LLENEGAIAFVDALKESAPSLEVLELAG--NEITRDAALALA 291 (382)
T ss_pred -ccccccHHHHHHHHhccCCCCceeccCc--chhHHHHHHHHH
Confidence 788877766654 568999999999 788887765554
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.22 E-value=4.3e-11 Score=122.19 Aligned_cols=247 Identities=18% Similarity=0.161 Sum_probs=135.5
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-ccChHHHHHHHh
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NVTDVGLEILAS 162 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~~ 162 (390)
...+++|+.++++++..+.. ++.+ ..+++|++|++.+|..+.. +..-...+++|+.|++++| .+..-. ...
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~--ip~l-s~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp--~~i- 701 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKE--IPDL-SMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILP--TGI- 701 (1153)
T ss_pred cccCCCCCEEECCCCCCcCc--CCcc-ccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccC--CcC-
Confidence 45678899999987654332 1222 2358899999988864432 2222345788888888887 332211 001
Q ss_pred cCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc------------------------------ccccc
Q 016420 163 TCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI------------------------------GFNGC 212 (390)
Q Consensus 163 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~------------------------------~~~~~ 212 (390)
.+++|+.|++++|..+.. +....++|+.|++.++....-. .....
T Consensus 702 ~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhc
Confidence 367788888877653221 1111334555555443311000 00122
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCC
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCP 292 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 292 (390)
+++|+.|++++|......+..+..+++|+.|++.+|......... ..+++|+.|++++|..+.. +....+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-----~~L~sL~~L~Ls~c~~L~~-----~p~~~~ 846 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-----INLESLESLDLSGCSRLRT-----FPDIST 846 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-----CCccccCEEECCCCCcccc-----cccccc
Confidence 357888888877655555666777888888888776432211100 1356777888877754322 111234
Q ss_pred CCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCC
Q 016420 293 LLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVS 359 (390)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~ 359 (390)
+|+.|+|+++. ++. +..-...+++|+.|++.+|.+++. +......++.|+.+++++ |..++
T Consensus 847 nL~~L~Ls~n~-i~~--iP~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~-C~~L~ 907 (1153)
T PLN03210 847 NISDLNLSRTG-IEE--VPWWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSD-CGALT 907 (1153)
T ss_pred ccCEeECCCCC-Ccc--ChHHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCC-Ccccc
Confidence 56666666542 321 111123466777777777765553 222223456677777776 76554
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.4e-12 Score=107.22 Aligned_cols=213 Identities=16% Similarity=0.091 Sum_probs=140.8
Q ss_pred hhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcC
Q 016420 85 TRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTC 164 (390)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 164 (390)
..+++|+.+.|.++ .+.........+.|++++.|+|+.+-...-..+..+++.+|+|+.|+++.|.+....-......+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45677888888764 34443444567788999999999875444556777888999999999999844321111111236
Q ss_pred cccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccc-cccCCCCCeEEeeccCC-ChhhHHhhhcCCCccE
Q 016420 165 STLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGF-NGCSPTLAYIDAESCQL-GPEGIIGIVSGGGLEF 242 (390)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~ 242 (390)
+.|+.|.++.|. ++...+.++...+|+|+.|.+.++........ ...+..|++|++++|.+ .-+.......++.|+.
T Consensus 197 ~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 789999999986 77888888888899999999988753333222 24456899999999884 4444556677888888
Q ss_pred EEecCCccc--cccchhHhhhhccCCCccEEecCCCCCCC-hHHHHHHHhcCCCCceeeccc
Q 016420 243 LNVSGMSST--LNGGGLAAIGTGFATRLKTLNLRMCRNVG-DESIVAIAKGCPLLEEWNLSL 301 (390)
Q Consensus 243 L~l~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~~L~~L~l~~ 301 (390)
|.++.+... ..+++-..-....+++|+.|.+..+. +. ...+..+.. +++|+.|.+..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~-l~nlk~l~~~~ 335 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRT-LENLKHLRITL 335 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhc-cchhhhhhccc
Confidence 888765321 11111000012347889999998876 43 333444332 66777776543
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.16 E-value=2.7e-10 Score=116.44 Aligned_cols=225 Identities=16% Similarity=0.196 Sum_probs=102.7
Q ss_pred cCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-ccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcC
Q 016420 112 YGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGC 190 (390)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 190 (390)
.+++|+.|+++++..+..- .. ...+++|+.|++.+| .+.. +......+++|+.|++++|..+..-. ... .+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~i--p~-ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp--~~i-~l 703 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEI--PD-LSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILP--TGI-NL 703 (1153)
T ss_pred cCCCCCEEECCCCCCcCcC--Cc-cccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccC--CcC-CC
Confidence 3566777777665432211 11 223567777777766 2221 11122336677777777665432211 001 36
Q ss_pred CCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCcccccc---chhHhh-------
Q 016420 191 SQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNG---GGLAAI------- 260 (390)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~------- 260 (390)
++|+.|.+.+|..... +.....+|+.|+++++.+.. +.....+++|+.|.+.++...... ..+...
T Consensus 704 ~sL~~L~Lsgc~~L~~--~p~~~~nL~~L~L~~n~i~~--lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKS--FPDISTNISWLDLDETAIEE--FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCEEeCCCCCCccc--cccccCCcCeeecCCCcccc--ccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 6777777777654322 11223567777777665332 111112334444444332110000 000000
Q ss_pred -----------------hhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeE
Q 016420 261 -----------------GTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKL 323 (390)
Q Consensus 261 -----------------~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (390)
....+++|+.|++.+|..+.... ... .+++|+.|++++|..+.. +....++|+.|
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP--~~~-~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L 851 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP--TGI-NLESLESLDLSGCSRLRT-----FPDISTNISDL 851 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC--CCC-CccccCEEECCCCCcccc-----ccccccccCEe
Confidence 11224444444444443222100 000 234455555554433221 01112355666
Q ss_pred EcccccccCchHHHHHHHcCCCCceeeccccCCcCCh
Q 016420 324 HVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 324 ~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
+++++ .++. +..-...+++|+.|++++ |++++.
T Consensus 852 ~Ls~n-~i~~--iP~si~~l~~L~~L~L~~-C~~L~~ 884 (1153)
T PLN03210 852 NLSRT-GIEE--VPWWIEKFSNLSFLDMNG-CNNLQR 884 (1153)
T ss_pred ECCCC-CCcc--ChHHHhcCCCCCEEECCC-CCCcCc
Confidence 66554 3442 333345789999999999 988875
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.5e-11 Score=103.47 Aligned_cols=182 Identities=19% Similarity=0.118 Sum_probs=72.4
Q ss_pred CCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc--ccccccCCCCCe
Q 016420 141 SLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG--IGFNGCSPTLAY 218 (390)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~ 218 (390)
+|+.+.|.++.+...+.....+.||+++.|+++.+-.-.-..+..+++.+|+|+.|+++.+..... .......+.|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 344444444433333332333334444444444432222233344444444444444443322111 111112344555
Q ss_pred EEeeccCCChhhHHhh-hcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCcee
Q 016420 219 IDAESCQLGPEGIIGI-VSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEW 297 (390)
Q Consensus 219 L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 297 (390)
|.++.|.++-.....+ ..+|+|+.|.+..+... .........+..|+.|+|+++..++...+. ....+|.|..|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~----~~~~~~~~i~~~L~~LdLs~N~li~~~~~~-~~~~l~~L~~L 276 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII----LIKATSTKILQTLQELDLSNNNLIDFDQGY-KVGTLPGLNQL 276 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc----ceecchhhhhhHHhhccccCCccccccccc-ccccccchhhh
Confidence 5555555443333332 44555555555444211 111111112445556666555523222221 22235555555
Q ss_pred ecccccCCC-----hhHHHHHhhcCCCCCeEEcccc
Q 016420 298 NLSLCHEVR-----FPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 298 ~l~~~~~~~-----~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
+++.|. +. |.+.......+++|+.|++..+
T Consensus 277 nls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 277 NLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred hccccC-cchhcCCCccchhhhcccccceeeecccC
Confidence 555442 11 1122222233556666666655
No 19
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.99 E-value=1.9e-10 Score=69.31 Aligned_cols=36 Identities=44% Similarity=0.768 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhcc
Q 016420 12 IMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQN 48 (390)
Q Consensus 12 ~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~ 48 (390)
|..||+||+.+||+||+. +|..++++|||+|++++.
T Consensus 1 i~~LP~Eil~~If~~L~~-~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDP-RDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-H-HHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHC
Confidence 678999999999999986 899999999999999863
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.88 E-value=1.7e-10 Score=103.94 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=19.6
Q ss_pred CCCCCeEEcccccccCch--HHHHHHHcCCCCceeeccccCCcCC
Q 016420 317 CNNLEKLHVNRCRNLCDR--GLQALRDGCKQLLILYANKKNSRVS 359 (390)
Q Consensus 317 ~~~L~~L~l~~~~~i~~~--~~~~l~~~~~~L~~L~l~~~c~~l~ 359 (390)
.++|+.|+++++ .|+.- +...+ .+|+.|+++. ++++
T Consensus 244 l~~LrrLNLS~N-~iteL~~~~~~W----~~lEtLNlSr--NQLt 281 (1255)
T KOG0444|consen 244 LRNLRRLNLSGN-KITELNMTEGEW----ENLETLNLSR--NQLT 281 (1255)
T ss_pred hhhhheeccCcC-ceeeeeccHHHH----hhhhhhcccc--chhc
Confidence 456777777766 45532 22222 3666677766 5444
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.86 E-value=9.6e-11 Score=105.53 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcC
Q 016420 317 CNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRV 358 (390)
Q Consensus 317 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l 358 (390)
|++|+.|.+..+.-|| +.....-++.|+.|++.. .+++
T Consensus 338 C~kL~kL~L~~NrLiT---LPeaIHlL~~l~vLDlre-NpnL 375 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLIT---LPEAIHLLPDLKVLDLRE-NPNL 375 (1255)
T ss_pred hHHHHHhcccccceee---chhhhhhcCCcceeeccC-CcCc
Confidence 6677777777665555 222233456777777776 5544
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.81 E-value=1.9e-08 Score=95.97 Aligned_cols=158 Identities=9% Similarity=0.075 Sum_probs=99.4
Q ss_pred CCCCeEEeccc-ccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCe
Q 016420 140 SSLTSISLYRC-NVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAY 218 (390)
Q Consensus 140 ~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 218 (390)
.+|++|++++. .+.......+...+|.|++|.+.+.. +....+..+...+|+|..|+++++.-..- .-.+..++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 56777777776 44444555666667777777776644 44445667777777777777777553222 22233467777
Q ss_pred EEeeccCCCh-hhHHhhhcCCCccEEEecCCccccccchhHhh--hhccCCCccEEecCCCCCCChHHHHHHHhcCCCCc
Q 016420 219 IDAESCQLGP-EGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAI--GTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLE 295 (390)
Q Consensus 219 L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 295 (390)
|.+.+-.+.. ..+..+..+.+|+.||++.........-+... ....+|+|+.|+.++.. ++.+.+..+...-|+|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhCccHh
Confidence 7777666443 66777778888888888765443222111111 11237888888888877 77777777776667777
Q ss_pred eeecc
Q 016420 296 EWNLS 300 (390)
Q Consensus 296 ~L~l~ 300 (390)
.+..-
T Consensus 279 ~i~~~ 283 (699)
T KOG3665|consen 279 QIAAL 283 (699)
T ss_pred hhhhh
Confidence 66543
No 23
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.77 E-value=1.1e-07 Score=77.40 Aligned_cols=273 Identities=18% Similarity=0.175 Sum_probs=163.6
Q ss_pred hCCCccEEEecCCCCCChhHHHHHHHc---CCCccEEEcCCCC--CCChHH------HHHHHHhCCCCCeEEecccccCh
Q 016420 86 RFQHLNWLSLSGCTELPDSGLNQLQNY---GSKLQTLYLDCCF--QITDNG------LSVIATGCSSLTSISLYRCNVTD 154 (390)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~--~~~~~~------~~~l~~~~~~L~~L~l~~~~~~~ 154 (390)
....+..++|+|. .+..+....++.. -.+|+..+++... ...+.. +......||.|+.++|+.|.+..
T Consensus 28 ~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3788899999985 4666666666543 3566666666432 111211 11223358999999998884433
Q ss_pred ---HHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhh-
Q 016420 155 ---VGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEG- 230 (390)
Q Consensus 155 ---~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~- 230 (390)
..+..+..+...|++|.+++|. +.+.+-..+.+.+.+|-...- ....|.|+......|.+....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKK-----------aa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKK-----------AADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhh-----------hccCCCceEEEeccchhccCcH
Confidence 3444555667789999997765 555444444433222221110 112356777777777644322
Q ss_pred --HHhh-hcCCCccEEEecCCccccccchhH---hhhhccCCCccEEecCCCCCCChHHHHHHHh---cCCCCceeeccc
Q 016420 231 --IIGI-VSGGGLEFLNVSGMSSTLNGGGLA---AIGTGFATRLKTLNLRMCRNVGDESIVAIAK---GCPLLEEWNLSL 301 (390)
Q Consensus 231 --~~~l-~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~ 301 (390)
.... .....|+.+.+..+.. .+.|+. .....++.+|+.|++..+. ++..+-..++. .++.|+.|.++.
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgI--rpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGI--RPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCc--CcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccc
Confidence 2222 2335788888876543 344433 3345678999999999987 77666544433 356789999999
Q ss_pred ccCCChhHHHHHhh-----cCCCCCeEEcccccc----cCchHHHHHH-HcCCCCceeeccccCCcCChH--HHHHHHhh
Q 016420 302 CHEVRFPGWASVGL-----NCNNLEKLHVNRCRN----LCDRGLQALR-DGCKQLLILYANKKNSRVSST--AWELFKMY 369 (390)
Q Consensus 302 ~~~~~~~~~~~l~~-----~~~~L~~L~l~~~~~----i~~~~~~~l~-~~~~~L~~L~l~~~c~~l~~~--~~~~l~~~ 369 (390)
|- ++..+...+.. ..|+|..|...++.. |.+..+..+. .+.|-|..+.+.| ++++.. ....++..
T Consensus 252 Cl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng--Nr~~E~~d~~d~~~~i 328 (388)
T COG5238 252 CL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG--NRIKELADFGDYYEDI 328 (388)
T ss_pred hh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc--CcchhHHHHHHHHHHH
Confidence 95 55555444432 358899988877631 2233343333 3578888888888 778763 44556555
Q ss_pred cCceeEee
Q 016420 370 RGNVDIKD 377 (390)
Q Consensus 370 ~~~l~~~~ 377 (390)
+..+.+..
T Consensus 329 f~~~ev~e 336 (388)
T COG5238 329 FEVVEVVE 336 (388)
T ss_pred hhhhcccc
Confidence 55444433
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.68 E-value=5.9e-08 Score=92.62 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=111.1
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
.+|++|+++|...+.......+...+|.|++|.+++-. +....+..++..+|+|..||++++.+++- ..+ +.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GI-S~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNISNL--SGI-SRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCccCc--HHH-hccccH
Confidence 68899999987777777777788888999999999855 55555778888899999999999866653 333 337889
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccc-------cccCCCCCeEEeeccCCChhhHHhhh-cCCC
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGF-------NGCSPTLAYIDAESCQLGPEGIIGIV-SGGG 239 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~ 239 (390)
+.|.+.+-...+...+..+.. +.+|+.|+++.......... ....|+|+.|+.+++.+..+.+..+. ..|+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 998887665444466666665 89999999987665443211 23468999999999888887777653 3455
Q ss_pred ccEEE
Q 016420 240 LEFLN 244 (390)
Q Consensus 240 L~~L~ 244 (390)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 55444
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.66 E-value=6.1e-08 Score=93.11 Aligned_cols=84 Identities=17% Similarity=0.007 Sum_probs=52.0
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCC
Q 016420 266 TRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQ 345 (390)
Q Consensus 266 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 345 (390)
.+|+.|+++++. ++... ...++|+.|+++++. ++. +.. ...+|+.|+++++ .++. +..-...+++
T Consensus 382 ~~L~~LdLs~N~-Lt~LP-----~l~s~L~~LdLS~N~-Lss--IP~---l~~~L~~L~Ls~N-qLt~--LP~sl~~L~~ 446 (788)
T PRK15387 382 SGLKELIVSGNR-LTSLP-----VLPSELKELMVSGNR-LTS--LPM---LPSGLLSLSVYRN-QLTR--LPESLIHLSS 446 (788)
T ss_pred cccceEEecCCc-ccCCC-----CcccCCCEEEccCCc-CCC--CCc---chhhhhhhhhccC-cccc--cChHHhhccC
Confidence 467777777765 44211 123567788887753 331 111 1246777888876 4652 3332336889
Q ss_pred CceeeccccCCcCChHHHHHH
Q 016420 346 LLILYANKKNSRVSSTAWELF 366 (390)
Q Consensus 346 L~~L~l~~~c~~l~~~~~~~l 366 (390)
|+.|++++ +.++......+
T Consensus 447 L~~LdLs~--N~Ls~~~~~~L 465 (788)
T PRK15387 447 ETTVNLEG--NPLSERTLQAL 465 (788)
T ss_pred CCeEECCC--CCCCchHHHHH
Confidence 99999998 78888777666
No 26
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=2.6e-08 Score=82.01 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCccEEEcCCCCCCCh-HHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHH
Q 016420 105 GLNQLQNYGSKLQTLYLDCCFQITD-NGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGL 183 (390)
Q Consensus 105 ~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l 183 (390)
....+...+..++.+++.++. +++ +.+..+.+++|.|+.|+++.|.+.. .+..+.....+|+.|-+++. +++....
T Consensus 62 d~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT-~L~w~~~ 138 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGT-GLSWTQS 138 (418)
T ss_pred hHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCC-CCChhhh
Confidence 344556667788888888755 444 4566777788888888888775442 22222222457888888664 3666666
Q ss_pred HHHHHcCCCCCEEecccc
Q 016420 184 RALSQGCSQLTAVRTSSC 201 (390)
Q Consensus 184 ~~l~~~~~~L~~L~l~~~ 201 (390)
....+.+|.++.|+++.+
T Consensus 139 ~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhhcchhhhhhhhccc
Confidence 666777777777777654
No 27
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.56 E-value=1.1e-08 Score=62.05 Aligned_cols=37 Identities=32% Similarity=0.596 Sum_probs=31.1
Q ss_pred cCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhcc
Q 016420 11 SIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQN 48 (390)
Q Consensus 11 ~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~ 48 (390)
+|.+||+|++.+||++|+. .+..++++|||+|+.+..
T Consensus 2 ~~~~LP~~il~~Il~~l~~-~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDP-KDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-H-HHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCcH-HHHHHHHHHhhHHHHHHc
Confidence 5789999999999999997 899999999999999754
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.53 E-value=9.7e-09 Score=96.74 Aligned_cols=130 Identities=16% Similarity=0.075 Sum_probs=82.8
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCC
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCP 292 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 292 (390)
.+.|+.|++.+|.++++.+..+...++|+.|+|+.+.... +.+.....++.|++|.++|+. ++... ..++ .|+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~----fpas~~~kle~LeeL~LSGNk-L~~Lp-~tva-~~~ 430 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS----FPASKLRKLEELEELNLSGNK-LTTLP-DTVA-NLG 430 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc----CCHHHHhchHHhHHHhcccch-hhhhh-HHHH-hhh
Confidence 3578888999999999888888888999999998764321 222233457788888998887 55433 2222 366
Q ss_pred CCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCC
Q 016420 293 LLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNS 356 (390)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~ 356 (390)
.|++|...++. +.. +..++ ..+.|+.+|++.+ +++...+..... -|+|++|+++| ..
T Consensus 431 ~L~tL~ahsN~-l~~--fPe~~-~l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSG-N~ 487 (1081)
T KOG0618|consen 431 RLHTLRAHSNQ-LLS--FPELA-QLPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSG-NT 487 (1081)
T ss_pred hhHHHhhcCCc-eee--chhhh-hcCcceEEecccc-hhhhhhhhhhCC-CcccceeeccC-Cc
Confidence 66666554432 111 11222 3567778888755 566655554442 26788888877 54
No 29
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=1.2e-07 Score=73.77 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=90.1
Q ss_pred CccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCC
Q 016420 267 RLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQL 346 (390)
Q Consensus 267 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L 346 (390)
.++.++-+++. |..+++..+. .++.|+.|.+.+|..+.|.++..+....++|+.|+|++|++||+.++..+. .+++|
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 45666767766 8888888875 489999999999999999999999988899999999999999999999888 59999
Q ss_pred ceeeccccCCcCCh--HHHHHHHhhcCceeEeecce
Q 016420 347 LILYANKKNSRVSS--TAWELFKMYRGNVDIKDEEV 380 (390)
Q Consensus 347 ~~L~l~~~c~~l~~--~~~~~l~~~~~~l~~~~~~~ 380 (390)
+.|.+.+ -+.+.. .....+.+..|+.+|...++
T Consensus 179 r~L~l~~-l~~v~~~e~~~~~Le~aLP~c~I~~~d~ 213 (221)
T KOG3864|consen 179 RRLHLYD-LPYVANLELVQRQLEEALPKCDIVGPDV 213 (221)
T ss_pred HHHHhcC-chhhhchHHHHHHHHHhCcccceechhh
Confidence 9999988 555543 23456677889888876554
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=4.1e-07 Score=75.15 Aligned_cols=226 Identities=13% Similarity=0.069 Sum_probs=129.8
Q ss_pred ccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChH-HHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCC
Q 016420 116 LQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDV-GLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLT 194 (390)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 194 (390)
++-+.+.+|.--+...+..+...+..+++++|.+|.+++. .+.++.+++|.|+.|+++.+. +.. .+..+.....+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s-~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSS-DIKSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCC-ccccCcccccceE
Confidence 4455666665334445666777788899999999866654 577888889999999997654 322 2222211245778
Q ss_pred EEeccccCccCc--ccccccCCCCCeEEeeccCCC-----hhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCC
Q 016420 195 AVRTSSCRTVTG--IGFNGCSPTLAYIDAESCQLG-----PEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATR 267 (390)
Q Consensus 195 ~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 267 (390)
.|-+.++..... ..+....|.+++|+++.|.+. ++.... ..+.+++|+..+|......+... ....+|+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~--l~r~Fpn 200 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNK--LSRIFPN 200 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHh--HHhhccc
Confidence 887776542211 233344567777777776321 111111 12355666665553221111111 1123778
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCch-----HHHHHHHc
Q 016420 268 LKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDR-----GLQALRDG 342 (390)
Q Consensus 268 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~-----~~~~l~~~ 342 (390)
+..+-+..|+ +.+..-..-...+|.+-.|+|+..+--+...+.++. .+++|..|++.+.+ +.+. -..-+...
T Consensus 201 v~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln-~f~~l~dlRv~~~P-l~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 201 VNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN-GFPQLVDLRVSENP-LSDPLRGGERRFLLIAR 277 (418)
T ss_pred chheeeecCc-ccchhhcccCCCCCcchhhhhcccccccHHHHHHHc-CCchhheeeccCCc-ccccccCCcceEEEEee
Confidence 8888887776 666555544555677777777765433344555554 57889999988875 3221 11122335
Q ss_pred CCCCceee
Q 016420 343 CKQLLILY 350 (390)
Q Consensus 343 ~~~L~~L~ 350 (390)
+++++.|+
T Consensus 278 L~~v~vLN 285 (418)
T KOG2982|consen 278 LTKVQVLN 285 (418)
T ss_pred ccceEEec
Confidence 66777663
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.41 E-value=2.9e-07 Score=72.15 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=11.0
Q ss_pred CCCccEEecCCCCCCChHH--HHHHHhcCCCCceeec
Q 016420 265 ATRLKTLNLRMCRNVGDES--IVAIAKGCPLLEEWNL 299 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l 299 (390)
+++|+.|++.+++ +.+.. -..+...+|+|+.|+-
T Consensus 112 l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 112 LPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 4455555555444 32211 1223334555555544
No 32
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.39 E-value=1.9e-07 Score=54.45 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=30.6
Q ss_pred CCHHHHHHHHhhCCCccchhHHhhhhhhhHhhcc
Q 016420 15 LPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQN 48 (390)
Q Consensus 15 LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~ 48 (390)
||+|++.+||++|+. .|+.+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~-~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPP-KDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhc
Confidence 799999999999996 899999999999999854
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=2.4e-07 Score=72.65 Aligned_cols=86 Identities=21% Similarity=0.137 Sum_probs=32.7
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCCh-hHHHHHhhcCCCCCeEEcccccccCchHH-HHHHH
Q 016420 264 FATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRF-PGWASVGLNCNNLEKLHVNRCRNLCDRGL-QALRD 341 (390)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~i~~~~~-~~l~~ 341 (390)
.+++|+.|+++++. ++... ..+...+|+|+.|.++++. +.+ ..+..+ ..+|+|+.|++.+++--..... ..+..
T Consensus 62 ~L~~L~~L~L~~N~-I~~i~-~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~ 137 (175)
T PF14580_consen 62 GLPRLKTLDLSNNR-ISSIS-EGLDKNLPNLQELYLSNNK-ISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIY 137 (175)
T ss_dssp --TT--EEE--SS----S-C-HHHHHH-TT--EEE-TTS----SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHH
T ss_pred ChhhhhhcccCCCC-CCccc-cchHHhCCcCCEEECcCCc-CCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHH
Confidence 35667777777765 55432 1222346777777776643 332 222233 3477888888887752222222 23445
Q ss_pred cCCCCceeeccc
Q 016420 342 GCKQLLILYANK 353 (390)
Q Consensus 342 ~~~~L~~L~l~~ 353 (390)
.+|+|+.||-..
T Consensus 138 ~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 138 KLPSLKVLDGQD 149 (175)
T ss_dssp H-TT-SEETTEE
T ss_pred HcChhheeCCEE
Confidence 678888886654
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.31 E-value=5.6e-06 Score=80.18 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=64.5
Q ss_pred CCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcC
Q 016420 238 GGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNC 317 (390)
Q Consensus 238 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (390)
++|+.|++.++.... +. ...+++|+.|++++|. ++... ..+ .+.|+.|+|++|. ++.-. ..+.
T Consensus 325 ~sL~~L~Ls~N~Lt~----LP---~~l~~sL~~L~Ls~N~-L~~LP-~~l---p~~L~~LdLs~N~-Lt~LP-~~l~--- 387 (754)
T PRK15370 325 PGLKTLEAGENALTS----LP---ASLPPELQVLDVSKNQ-ITVLP-ETL---PPTITTLDVSRNA-LTNLP-ENLP--- 387 (754)
T ss_pred ccceeccccCCcccc----CC---hhhcCcccEEECCCCC-CCcCC-hhh---cCCcCEEECCCCc-CCCCC-HhHH---
Confidence 456666666553211 11 1123678888888775 54211 111 3578888888764 33110 1111
Q ss_pred CCCCeEEcccccccCc--hHHHHHHHcCCCCceeeccccCCcCChHHHHHHHh
Q 016420 318 NNLEKLHVNRCRNLCD--RGLQALRDGCKQLLILYANKKNSRVSSTAWELFKM 368 (390)
Q Consensus 318 ~~L~~L~l~~~~~i~~--~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~~l~~ 368 (390)
+.|+.|+++++ .++. ..+..+...++++..|++.+ +.++...++.++.
T Consensus 388 ~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~--Npls~~tl~~L~~ 437 (754)
T PRK15370 388 AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEY--NPFSERTIQNMQR 437 (754)
T ss_pred HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeC--CCccHHHHHHHHH
Confidence 25777788776 4542 23555555678899999998 8888877776643
No 35
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=1e-05 Score=66.31 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=77.6
Q ss_pred hcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHH----HhcCCCCceeecccccCCChhHH
Q 016420 235 VSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAI----AKGCPLLEEWNLSLCHEVRFPGW 310 (390)
Q Consensus 235 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~~~~~~~ 310 (390)
+.-|.|+......+..........+.....-.+|+.+.+..+. |.++++..+ +..+.+|+.|+|..+ ..+-.+-
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS 231 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGS 231 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeecccc-chhhhhH
Confidence 4567888888776655444444433333334689999998887 887765433 235788999999874 4555544
Q ss_pred HHHh---hcCCCCCeEEcccccccCchHHHHHHHc-----CCCCceeeccc
Q 016420 311 ASVG---LNCNNLEKLHVNRCRNLCDRGLQALRDG-----CKQLLILYANK 353 (390)
Q Consensus 311 ~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~~~-----~~~L~~L~l~~ 353 (390)
..++ ..++.|++|++..| .++..|...+.+. .|+|..|....
T Consensus 232 ~~La~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHHHHHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccch
Confidence 4443 45688999999998 6777777766553 47777776655
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.20 E-value=1.1e-06 Score=72.89 Aligned_cols=225 Identities=14% Similarity=0.066 Sum_probs=118.3
Q ss_pred HHHHHHcCCCccEEEcCCCCC------CChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCC
Q 016420 106 LNQLQNYGSKLQTLYLDCCFQ------ITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHIS 179 (390)
Q Consensus 106 l~~l~~~~~~L~~L~l~~~~~------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 179 (390)
+..+..+|..|+.|.+++... +....+..-.+.+++|+.+.++.| +.+.+..+...-|.|..+...+.. +.
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~--~~~~i~~~~~~kptl~t~~v~~s~-~~ 250 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL--STENIVDIELLKPTLQTICVHNTT-IQ 250 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc--chhheeceeecCchhheeeeeccc-cc
Confidence 445556667777777776532 112222222233566777777665 122232333334666666664322 11
Q ss_pred HHHHHHHHHcCCCCCEEeccccCccCccc----ccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccc
Q 016420 180 DCGLRALSQGCSQLTAVRTSSCRTVTGIG----FNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGG 255 (390)
Q Consensus 180 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 255 (390)
+.. .+ .|.-...+..+.......+ ...-...|+++++++|.+.... ..+.-.|.++.|+++.+....-+.
T Consensus 251 ~~~--~l---~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n 324 (490)
T KOG1259|consen 251 DVP--SL---LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN 324 (490)
T ss_pred ccc--cc---cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh
Confidence 100 00 1111111111111111111 1122346888888888654311 223445788888888764332221
Q ss_pred hhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchH
Q 016420 256 GLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRG 335 (390)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~ 335 (390)
+ ..+++|++|+++++. ++.. .-.-..+-|++.|.+.++.--+-.|+..+. +|..|+++++ +|.+..
T Consensus 325 -L-----a~L~~L~~LDLS~N~-Ls~~--~Gwh~KLGNIKtL~La~N~iE~LSGL~KLY----SLvnLDl~~N-~Ie~ld 390 (490)
T KOG1259|consen 325 -L-----AELPQLQLLDLSGNL-LAEC--VGWHLKLGNIKTLKLAQNKIETLSGLRKLY----SLVNLDLSSN-QIEELD 390 (490)
T ss_pred -h-----hhcccceEeecccch-hHhh--hhhHhhhcCEeeeehhhhhHhhhhhhHhhh----hheecccccc-chhhHH
Confidence 2 257899999999876 4331 122234678899988875433334555554 7888899887 566533
Q ss_pred HHHHHHcCCCCceeeccc
Q 016420 336 LQALRDGCKQLLILYANK 353 (390)
Q Consensus 336 ~~~l~~~~~~L~~L~l~~ 353 (390)
-..-..++|.|+.+.+.+
T Consensus 391 eV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTG 408 (490)
T ss_pred HhcccccccHHHHHhhcC
Confidence 323334788888888877
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.15 E-value=6.8e-06 Score=79.37 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=57.2
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
.+-..|++++. .++. ++.- ..++|+.|++.++. ++. +....++|++|++++|.++.- ....++|
T Consensus 201 ~~~~~LdLs~~-~Lts--LP~~--l~~~L~~L~L~~N~-Lt~-----LP~lp~~Lk~LdLs~N~LtsL-----P~lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGES-GLTT--LPDC--LPAHITTLVIPDNN-LTS-----LPALPPELRTLEVSGNQLTSL-----PVLPPGL 264 (788)
T ss_pred CCCcEEEcCCC-CCCc--CCcc--hhcCCCEEEccCCc-CCC-----CCCCCCCCcEEEecCCccCcc-----cCccccc
Confidence 34556777654 2221 1110 11467777777643 332 122357788888887755421 1123567
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCC
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLG 227 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 227 (390)
+.|++.++. +. .+. ...+.|+.|++.++.... +...+++|+.|++++|.+.
T Consensus 265 ~~L~Ls~N~-L~--~Lp---~lp~~L~~L~Ls~N~Lt~---LP~~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 265 LELSIFSNP-LT--HLP---ALPSGLCKLWIFGNQLTS---LPVLPPGLQELSVSDNQLA 315 (788)
T ss_pred ceeeccCCc-hh--hhh---hchhhcCEEECcCCcccc---ccccccccceeECCCCccc
Confidence 777776553 22 111 123456666665543221 1122356666666666544
No 38
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.99 E-value=3.6e-06 Score=80.02 Aligned_cols=92 Identities=23% Similarity=0.159 Sum_probs=54.9
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcC
Q 016420 264 FATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGC 343 (390)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 343 (390)
..++|+.|+|+++. +..-.... .++++.|+.|.|+|+. ++.-. ..+ ..|+.|++|...++ .+.. +.+++ .+
T Consensus 381 ~~~hLKVLhLsyNr-L~~fpas~-~~kle~LeeL~LSGNk-L~~Lp-~tv-a~~~~L~tL~ahsN-~l~~--fPe~~-~l 451 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNR-LNSFPASK-LRKLEELEELNLSGNK-LTTLP-DTV-ANLGRLHTLRAHSN-QLLS--FPELA-QL 451 (1081)
T ss_pred cccceeeeeecccc-cccCCHHH-HhchHHhHHHhcccch-hhhhh-HHH-HhhhhhHHHhhcCC-ceee--chhhh-hc
Confidence 46677777777764 33222222 2346677777777742 33222 122 24667777776655 3432 44555 58
Q ss_pred CCCceeeccccCCcCChHHHHHH
Q 016420 344 KQLLILYANKKNSRVSSTAWELF 366 (390)
Q Consensus 344 ~~L~~L~l~~~c~~l~~~~~~~l 366 (390)
+.|+.+|++. ++++.-.+...
T Consensus 452 ~qL~~lDlS~--N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 452 PQLKVLDLSC--NNLSEVTLPEA 472 (1081)
T ss_pred CcceEEeccc--chhhhhhhhhh
Confidence 9999999975 98887666554
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=1.8e-05 Score=61.96 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=64.2
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHH--HHHHH
Q 016420 264 FATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGL--QALRD 341 (390)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~--~~l~~ 341 (390)
.++.++.|.+.+|..+.|.++..+....|+|+.|+|++|..|++.++..+.. +++|+.|.+.+-+.+.+... ..+-+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~l~~v~~~e~~~~~Le~ 201 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYDLPYVANLELVQRQLEE 201 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcCchhhhchHHHHHHHHH
Confidence 4677788888888888888888888888889999999998899988888874 78888888887765554322 23344
Q ss_pred cCCCCcee
Q 016420 342 GCKQLLIL 349 (390)
Q Consensus 342 ~~~~L~~L 349 (390)
.+|+++..
T Consensus 202 aLP~c~I~ 209 (221)
T KOG3864|consen 202 ALPKCDIV 209 (221)
T ss_pred hCccccee
Confidence 56766654
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.89 E-value=6.3e-05 Score=73.10 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=68.5
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCC
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCP 292 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 292 (390)
+++|+.|++++|.+... ...+ .++|+.|+++++....-+. ...++|+.|++++|. ++... ..+. +
T Consensus 324 ~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~LP~-------~lp~~L~~LdLs~N~-Lt~LP-~~l~---~ 388 (754)
T PRK15370 324 PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVLPE-------TLPPTITTLDVSRNA-LTNLP-ENLP---A 388 (754)
T ss_pred cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcCCh-------hhcCCcCEEECCCCc-CCCCC-HhHH---H
Confidence 35788888888775531 1122 2689999998875332111 124689999999987 55321 1121 3
Q ss_pred CCceeecccccCCC--hhHHHHHhhcCCCCCeEEcccccccCchHHHHH
Q 016420 293 LLEEWNLSLCHEVR--FPGWASVGLNCNNLEKLHVNRCRNLCDRGLQAL 339 (390)
Q Consensus 293 ~L~~L~l~~~~~~~--~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l 339 (390)
.|+.|+++++. +. ...+..+...++++..|++.++ .++...+..+
T Consensus 389 sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~N-pls~~tl~~L 435 (754)
T PRK15370 389 ALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYN-PFSERTIQNM 435 (754)
T ss_pred HHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCC-CccHHHHHHH
Confidence 58888888864 33 2234455555688999999988 4766555544
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.83 E-value=2.1e-06 Score=71.15 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=24.5
Q ss_pred hHHHHHHhhCCCccEEEecCCCC------CChhHHHHHHHcCCCccEEEcCCCC
Q 016420 78 FHVGRLLTRFQHLNWLSLSGCTE------LPDSGLNQLQNYGSKLQTLYLDCCF 125 (390)
Q Consensus 78 ~~l~~~~~~~~~L~~L~l~~~~~------~~~~~l~~l~~~~~~L~~L~l~~~~ 125 (390)
..+..++..+..|..|.+++... +....+++=...+.+|+.+.++.|.
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~ 225 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS 225 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc
Confidence 34555666667777777764321 1111222112234667777776653
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.66 E-value=1e-05 Score=69.68 Aligned_cols=87 Identities=21% Similarity=0.126 Sum_probs=46.7
Q ss_pred HcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecc-cccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHc
Q 016420 111 NYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYR-CNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQG 189 (390)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 189 (390)
+..++|+.|+|+.+. ++...... ++.+++|.+|.+.+ +++++-.-..+ .++..|+.|.++-+. +.- ......+.
T Consensus 88 ~~l~~LRrLdLS~N~-Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~slqrLllNan~-i~C-ir~~al~d 162 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNN-ISFIAPDA-FKGLASLLSLVLYGNNKITDLPKGAF-GGLSSLQRLLLNANH-INC-IRQDALRD 162 (498)
T ss_pred cchhhhceecccccc-hhhcChHh-hhhhHhhhHHHhhcCCchhhhhhhHh-hhHHHHHHHhcChhh-hcc-hhHHHHHH
Confidence 344778888888753 44333322 34466676776666 46665332233 225566666665432 221 12223334
Q ss_pred CCCCCEEeccccC
Q 016420 190 CSQLTAVRTSSCR 202 (390)
Q Consensus 190 ~~~L~~L~l~~~~ 202 (390)
++.|..|.+.++.
T Consensus 163 L~~l~lLslyDn~ 175 (498)
T KOG4237|consen 163 LPSLSLLSLYDNK 175 (498)
T ss_pred hhhcchhcccchh
Confidence 7778888776653
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.64 E-value=7.3e-06 Score=70.58 Aligned_cols=130 Identities=13% Similarity=0.069 Sum_probs=70.7
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQL 193 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 193 (390)
+...++.|..+. ++.-. ...+..+++|++|+|+.|.++..+-.++ +++++|..|.+.++..+++-.-..+ ..+..|
T Consensus 67 ~~tveirLdqN~-I~~iP-~~aF~~l~~LRrLdLS~N~Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~sl 142 (498)
T KOG4237|consen 67 PETVEIRLDQNQ-ISSIP-PGAFKTLHRLRRLDLSKNNISFIAPDAF-KGLASLLSLVLYGNNKITDLPKGAF-GGLSSL 142 (498)
T ss_pred CcceEEEeccCC-cccCC-hhhccchhhhceecccccchhhcChHhh-hhhHhhhHHHhhcCCchhhhhhhHh-hhHHHH
Confidence 456666666542 22211 2234457899999999996665544444 3367777777766555655322222 224445
Q ss_pred CEEeccccCc--cCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 194 TAVRTSSCRT--VTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 194 ~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
+.|.+..+.. +.... ..-.+++..|.+..|.+....-..+.....++++.+...
T Consensus 143 qrLllNan~i~Cir~~a-l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDA-LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHhcChhhhcchhHHH-HHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 5555543321 11122 223467777777766544433334455566677766544
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.63 E-value=1.7e-05 Score=78.32 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=37.3
Q ss_pred HcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcC
Q 016420 111 NYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGC 190 (390)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 190 (390)
..++.|+.|++++|.... .++.....+-+|+.|++++..+.. +..-...+..|.+|++..+.... .+..+...+
T Consensus 568 ~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~--~~~~i~~~L 641 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTGRLE--SIPGILLEL 641 (889)
T ss_pred hhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccccccc--cccchhhhc
Confidence 344666666666643221 222222224556666666554431 11111223455666655433211 112223335
Q ss_pred CCCCEEecccc
Q 016420 191 SQLTAVRTSSC 201 (390)
Q Consensus 191 ~~L~~L~l~~~ 201 (390)
++|++|.+...
T Consensus 642 ~~Lr~L~l~~s 652 (889)
T KOG4658|consen 642 QSLRVLRLPRS 652 (889)
T ss_pred ccccEEEeecc
Confidence 56666665543
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.36 E-value=3.1e-05 Score=72.09 Aligned_cols=187 Identities=18% Similarity=0.113 Sum_probs=96.1
Q ss_pred hhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHh------------------
Q 016420 77 SFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATG------------------ 138 (390)
Q Consensus 77 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~------------------ 138 (390)
...+..++.-.++++.|.+-..+.-.....-.|.+ +..|+.|.+++|.--+..++..+-..
T Consensus 73 l~qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifp-F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~a 151 (1096)
T KOG1859|consen 73 LEQLQRILDFLQKTKVLKLLPSPARDPTEPISIFP-FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFA 151 (1096)
T ss_pred HHHHHHHHHHHhhheeeeecccCCCCCCCCceecc-ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHH
Confidence 44556666666777776665433222221222333 37899999998863333333332211
Q ss_pred -C----------CCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCcc--C
Q 016420 139 -C----------SSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTV--T 205 (390)
Q Consensus 139 -~----------~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~ 205 (390)
| -.|...+.++|.+. .+..-.+-++.+++|+++.+. +++-. . .+.|+.|++|+++++..- +
T Consensus 152 scggd~~ns~~Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk-~~~v~--~-Lr~l~~LkhLDlsyN~L~~vp 225 (1096)
T KOG1859|consen 152 SCGGDISNSPVWNKLATASFSYNRLV--LMDESLQLLPALESLNLSHNK-FTKVD--N-LRRLPKLKHLDLSYNCLRHVP 225 (1096)
T ss_pred HhccccccchhhhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhh-hhhhH--H-HHhcccccccccccchhcccc
Confidence 1 01222233333111 111112235678888887764 33322 2 334888888888876532 2
Q ss_pred cccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCC
Q 016420 206 GIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCR 277 (390)
Q Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (390)
..+..+| .|..|.+++|.+. .+..+.++.+|+.|+++.+-. .+-..+.. ...+..|+.|+|.|+.
T Consensus 226 ~l~~~gc--~L~~L~lrnN~l~--tL~gie~LksL~~LDlsyNll-~~hseL~p--LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 226 QLSMVGC--KLQLLNLRNNALT--TLRGIENLKSLYGLDLSYNLL-SEHSELEP--LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccchhhh--hheeeeecccHHH--hhhhHHhhhhhhccchhHhhh-hcchhhhH--HHHHHHHHHHhhcCCc
Confidence 2222333 3778888877653 355667777777777765421 11122221 1224567777777765
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.36 E-value=0.00016 Score=71.64 Aligned_cols=129 Identities=15% Similarity=-0.004 Sum_probs=62.7
Q ss_pred cCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-ccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcC
Q 016420 112 YGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGC 190 (390)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 190 (390)
.+++|++|-+..............+..+|.|+.|++++| .+. .+......+-+|+.|++++.. +. .+..-..++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~-I~--~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTG-IS--HLPSGLGNL 617 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCC-cc--ccchHHHHH
Confidence 345677776665431111122233455777777777765 222 121222235567777776543 33 222222235
Q ss_pred CCCCEEeccccCccCc-ccccccCCCCCeEEeeccC--CChhhHHhhhcCCCccEEEe
Q 016420 191 SQLTAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQ--LGPEGIIGIVSGGGLEFLNV 245 (390)
Q Consensus 191 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l 245 (390)
..|.+|++..+..... .++....++|++|.+.... .+...+..+..+.+|+.+..
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 5677777766543322 2333335677777776543 22223333444445554444
No 47
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.35 E-value=3.3e-06 Score=64.19 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=7.2
Q ss_pred cCCCccEEecCCCC
Q 016420 264 FATRLKTLNLRMCR 277 (390)
Q Consensus 264 ~~~~L~~L~l~~~~ 277 (390)
.+|.|+.|++.++.
T Consensus 100 s~p~levldltynn 113 (264)
T KOG0617|consen 100 SFPALEVLDLTYNN 113 (264)
T ss_pred CCchhhhhhccccc
Confidence 34555555555543
No 48
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.28 E-value=0.00032 Score=35.79 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=16.0
Q ss_pred CCCCceeeccccCCcCChHHHHHHH
Q 016420 343 CKQLLILYANKKNSRVSSTAWELFK 367 (390)
Q Consensus 343 ~~~L~~L~l~~~c~~l~~~~~~~l~ 367 (390)
|++|+.|++++ |.++|+.++..+.
T Consensus 1 c~~L~~L~l~~-C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSG-CTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCC-CCCcCHHHHHHHh
Confidence 56667777776 7777777666654
No 49
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.24 E-value=9.6e-05 Score=67.98 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=18.9
Q ss_pred CCeEEcccccccCchHHHHH---HHcCCCCceeeccccCCcCChHHHH
Q 016420 320 LEKLHVNRCRNLCDRGLQAL---RDGCKQLLILYANKKNSRVSSTAWE 364 (390)
Q Consensus 320 L~~L~l~~~~~i~~~~~~~l---~~~~~~L~~L~l~~~c~~l~~~~~~ 364 (390)
++.+++..| .+++.+...+ ...|+.++.+.+.. +.+++.+..
T Consensus 264 l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~--n~l~~~~~~ 308 (478)
T KOG4308|consen 264 LRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSN--NPLTDYGVE 308 (478)
T ss_pred hhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhccc--CccccHHHH
Confidence 355555555 3444333222 22344555555544 445544443
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.16 E-value=0.00027 Score=45.09 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=5.2
Q ss_pred CCCccEEecCCC
Q 016420 265 ATRLKTLNLRMC 276 (390)
Q Consensus 265 ~~~L~~L~l~~~ 276 (390)
+++|++|+++++
T Consensus 48 l~~L~~L~l~~N 59 (61)
T PF13855_consen 48 LPNLRYLDLSNN 59 (61)
T ss_dssp STTESEEEETSS
T ss_pred CCCCCEEeCcCC
Confidence 444444444443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.15 E-value=3.7e-05 Score=71.61 Aligned_cols=102 Identities=22% Similarity=0.171 Sum_probs=50.7
Q ss_pred CCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHH-hcCCCCceeecccccCCChhHHHHHhh
Q 016420 237 GGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIA-KGCPLLEEWNLSLCHEVRFPGWASVGL 315 (390)
Q Consensus 237 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~l~~ 315 (390)
++.|+.|+|+.+.... .+. ...+++|++|+|+++. +.... .+. ..|. |..|.|+++.--+-.++.
T Consensus 186 l~ale~LnLshNk~~~-v~~-----Lr~l~~LkhLDlsyN~-L~~vp--~l~~~gc~-L~~L~lrnN~l~tL~gie---- 251 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK-VDN-----LRRLPKLKHLDLSYNC-LRHVP--QLSMVGCK-LQLLNLRNNALTTLRGIE---- 251 (1096)
T ss_pred HHHhhhhccchhhhhh-hHH-----HHhcccccccccccch-hcccc--ccchhhhh-heeeeecccHHHhhhhHH----
Confidence 4556666666553211 111 1246777777777665 32211 111 1133 666666664322223333
Q ss_pred cCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 316 NCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 316 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
++++|+.|+++++ .+.+..--...-.+..|+.|++.|
T Consensus 252 ~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcC
Confidence 2457777888776 344332222222455777888877
No 52
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.06 E-value=0.0006 Score=34.77 Aligned_cols=24 Identities=50% Similarity=0.940 Sum_probs=14.5
Q ss_pred CCCCCeEEcccccccCchHHHHHH
Q 016420 317 CNNLEKLHVNRCRNLCDRGLQALR 340 (390)
Q Consensus 317 ~~~L~~L~l~~~~~i~~~~~~~l~ 340 (390)
|++|+.|++++|.+|+|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666666666666665554
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.03 E-value=0.00058 Score=43.53 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=39.5
Q ss_pred CCCCEEeccccCccCc-ccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 191 SQLTAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 191 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
|+|+.|++.++....- .......++|++|++++|.+.......+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5677777777642211 223344578888888888877666667788888888888775
No 54
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.01 E-value=0.00047 Score=60.57 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=36.1
Q ss_pred CcCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhccc
Q 016420 10 TSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNL 49 (390)
Q Consensus 10 ~~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~~ 49 (390)
.+|++||+|+|..|.++|+..-|+.+.+.||+.||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4689999999999999998888999999999999997543
No 55
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.97 E-value=0.00025 Score=65.34 Aligned_cols=192 Identities=20% Similarity=0.244 Sum_probs=94.0
Q ss_pred ccEEEcCCCCCCChHHHHHHHH---hCCCCCeEEecccccChHHHHHHHhcCc----ccceeeccCCCCCCHHHHHHHHH
Q 016420 116 LQTLYLDCCFQITDNGLSVIAT---GCSSLTSISLYRCNVTDVGLEILASTCS----TLMRVNLAYCLHISDCGLRALSQ 188 (390)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~~~l~~l~~ 188 (390)
+..+.+.+|. +.+.+...+.. ..+.|..|+++++.+.+.+...+...++ .++.|.+..|. ++.++...+..
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHH
Confidence 5666666654 44444444333 3567777788777777776666654432 35566666654 55555444443
Q ss_pred c---CCCCCEEeccccCccCc------ccccc---cCCCCCeEEeeccCCChhhHHhh----hcCCC-ccEEEecCCccc
Q 016420 189 G---CSQLTAVRTSSCRTVTG------IGFNG---CSPTLAYIDAESCQLGPEGIIGI----VSGGG-LEFLNVSGMSST 251 (390)
Q Consensus 189 ~---~~~L~~L~l~~~~~~~~------~~~~~---~~~~L~~L~l~~~~~~~~~~~~l----~~~~~-L~~L~l~~~~~~ 251 (390)
. ++.++.+++..+..... .++.. ...++++|.+.+|.+++.....+ ...+. +..|++..+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-- 244 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-- 244 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC--
Confidence 3 45555556555543321 01111 23356677777766554443332 22233 3344444332
Q ss_pred cccchhHhhhh--ccC-CCccEEecCCCCCCChHHHH---HHHhcCCCCceeecccccCCChhHHHHH
Q 016420 252 LNGGGLAAIGT--GFA-TRLKTLNLRMCRNVGDESIV---AIAKGCPLLEEWNLSLCHEVRFPGWASV 313 (390)
Q Consensus 252 ~~~~~~~~~~~--~~~-~~L~~L~l~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~l 313 (390)
..+.++..... ... +.++++++..|. +++.+.. .....+++++.+.+... .+.+.+...+
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~ 310 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELL 310 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHH
Confidence 22222222211 112 455666666665 5544433 22334556666666553 3444444433
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00076 Score=55.82 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=58.5
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
.+++.|++.||. +++ ..++..++.|+.|.|+-+. ++ .+.. +..|++|++|.|..|.+.+..--...+++|+|
T Consensus 19 ~~vkKLNcwg~~-L~D---Isic~kMp~lEVLsLSvNk-Is--sL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDD---ISICEKMPLLEVLSLSVNK-IS--SLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCCC-ccH---HHHHHhcccceeEEeeccc-cc--cchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 455667777653 333 1345566777777777643 22 2222 23477788888877766554444445667778
Q ss_pred ceeeccCCCCCCHHH---HHHHHHcCCCCCEEe
Q 016420 168 MRVNLAYCLHISDCG---LRALSQGCSQLTAVR 197 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~---l~~l~~~~~~L~~L~ 197 (390)
+.|.|..+......+ -....+.+|+|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 877776544322211 133444577777765
No 57
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.54 E-value=8.7e-05 Score=56.62 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=17.8
Q ss_pred CCCCCeEEecccccChHHHHHHHhcCcccceeecc
Q 016420 139 CSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLA 173 (390)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 173 (390)
+.+|+.|++.++++.+- ..-...+++|++|+++
T Consensus 55 l~nlevln~~nnqie~l--p~~issl~klr~lnvg 87 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEEL--PTSISSLPKLRILNVG 87 (264)
T ss_pred hhhhhhhhcccchhhhc--Chhhhhchhhhheecc
Confidence 46677777766655431 1112235666666664
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.33 E-value=0.0081 Score=53.73 Aligned_cols=138 Identities=14% Similarity=0.190 Sum_probs=77.4
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-ccChHHHHHHHh
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NVTDVGLEILAS 162 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~~ 162 (390)
+..++++++|++++| .+.. ++ ...++|++|.+++|..++.. ...+ .++|+.|.+.+| .+. .+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~s--LP---~LP~sLtsL~Lsnc~nLtsL-P~~L---P~nLe~L~Ls~Cs~L~-----sL-- 110 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIES--LP---VLPNELTEITIENCNNLTTL-PGSI---PEGLEKLTVCHCPEIS-----GL-- 110 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcc--cC---CCCCCCcEEEccCCCCcccC-Cchh---hhhhhheEccCccccc-----cc--
Confidence 455689999999987 3332 22 23357999999988754221 1111 257899999887 443 12
Q ss_pred cCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccc-cccCCCCCeEEeeccCCChhhHHhhhcCCCcc
Q 016420 163 TCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGF-NGCSPTLAYIDAESCQLGPEGIIGIVSGGGLE 241 (390)
Q Consensus 163 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 241 (390)
.+.|+.|.+..+. .. . +..-.++|+.|.+.+......... ...+++|++|.+++|.... .+..+ ..+|+
T Consensus 111 -P~sLe~L~L~~n~-~~--~---L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk 180 (426)
T PRK15386 111 -PESVRSLEIKGSA-TD--S---IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKL--PESLQ 180 (426)
T ss_pred -ccccceEEeCCCC-Cc--c---cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccccc--cccCc
Confidence 2468888875432 11 1 112134677777754321111111 1345689999998876321 11111 14788
Q ss_pred EEEecCC
Q 016420 242 FLNVSGM 248 (390)
Q Consensus 242 ~L~l~~~ 248 (390)
.|.++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 8887543
No 59
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.32 E-value=2.9e-05 Score=67.23 Aligned_cols=242 Identities=13% Similarity=0.003 Sum_probs=117.8
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhc
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILAST 163 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 163 (390)
....+.+..+++++..... ....+. ....++.++++... +. .....+. ..++|++++++++.+..- ...+.+
T Consensus 64 l~nL~~l~vl~~~~n~l~~--lp~aig-~l~~l~~l~vs~n~-ls-~lp~~i~-s~~~l~~l~~s~n~~~el-~~~i~~- 135 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQ--LPAAIG-ELEALKSLNVSHNK-LS-ELPEQIG-SLISLVKLDCSSNELKEL-PDSIGR- 135 (565)
T ss_pred hhcccceeEEEeccchhhh--CCHHHH-HHHHHHHhhcccch-Hh-hccHHHh-hhhhhhhhhccccceeec-CchHHH-
Confidence 3455666666666432211 111111 12445556655532 11 0111111 245667777766633210 111111
Q ss_pred CcccceeeccCCCCC-CHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccE
Q 016420 164 CSTLMRVNLAYCLHI-SDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEF 242 (390)
Q Consensus 164 ~~~L~~L~l~~~~~~-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 242 (390)
+-.++.++-.++... ..+++.. +..|..+.+.++....-.+-...+..|++|+...|.+. ..+..++.+.+|..
T Consensus 136 ~~~l~dl~~~~N~i~slp~~~~~----~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 136 LLDLEDLDATNNQISSLPEDMVN----LSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLEL 210 (565)
T ss_pred HhhhhhhhccccccccCchHHHH----HHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHH
Confidence 334555555443311 1122222 33344555544332111111111456777777665432 23445555666666
Q ss_pred EEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCe
Q 016420 243 LNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEK 322 (390)
Q Consensus 243 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 322 (390)
|++..+.... +. .++.|..|++|+++.+. +..-. .+..++++.|..|+++.+. ++...-.... +.+|++
T Consensus 211 LyL~~Nki~~----lP--ef~gcs~L~Elh~g~N~-i~~lp-ae~~~~L~~l~vLDLRdNk-lke~Pde~cl--LrsL~r 279 (565)
T KOG0472|consen 211 LYLRRNKIRF----LP--EFPGCSLLKELHVGENQ-IEMLP-AEHLKHLNSLLVLDLRDNK-LKEVPDEICL--LRSLER 279 (565)
T ss_pred HHhhhccccc----CC--CCCccHHHHHHHhcccH-HHhhH-HHHhcccccceeeeccccc-cccCchHHHH--hhhhhh
Confidence 6665543322 22 22347788888887765 43322 3456678999999998853 4432222221 458999
Q ss_pred EEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 323 LHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 323 L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
|+++++ .|+. +..-..++ .|+.|.+.|
T Consensus 280 LDlSNN-~is~--Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 280 LDLSNN-DISS--LPYSLGNL-HLKFLALEG 306 (565)
T ss_pred hcccCC-cccc--CCcccccc-eeeehhhcC
Confidence 999988 4653 33223344 778888888
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.31 E-value=0.0051 Score=35.96 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=21.1
Q ss_pred CCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCC
Q 016420 318 NNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVS 359 (390)
Q Consensus 318 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~ 359 (390)
++|++|+++++ .|++ +......|++|+.|++++ +.++
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~--N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSN--NPIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETS--SCCS
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecC--CCCC
Confidence 36677777766 5664 333234677777777777 4454
No 61
>PLN03150 hypothetical protein; Provisional
Probab=96.24 E-value=0.015 Score=56.17 Aligned_cols=107 Identities=17% Similarity=0.000 Sum_probs=65.1
Q ss_pred CCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCc
Q 016420 216 LAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLE 295 (390)
Q Consensus 216 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 295 (390)
++.|+++++.+.......+..+++|+.|+++++...... +-....+++|+.|+++++. ++......+ ..+++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i----P~~~~~l~~L~~LdLs~N~-lsg~iP~~l-~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI----PPSLGSITSLEVLDLSYNS-FNGSIPESL-GQLTSLR 493 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC----ChHHhCCCCCCEEECCCCC-CCCCCchHH-hcCCCCC
Confidence 677888888877766777788888888888876432111 1112357888888888876 554333333 3478888
Q ss_pred eeecccccCCChhHHHHHhhcCCCCCeEEccccc
Q 016420 296 EWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCR 329 (390)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 329 (390)
.|+|+++. +....-..+.....++..+++.++.
T Consensus 494 ~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGNS-LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCCc-ccccCChHHhhccccCceEEecCCc
Confidence 88888754 3322222222222355666666553
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.17 E-value=0.0057 Score=48.35 Aligned_cols=34 Identities=12% Similarity=-0.086 Sum_probs=14.2
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSG 247 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 247 (390)
+.|..|.+.+|.+......-...+++|..|.+.+
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3455555555544433322223333444444433
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.10 E-value=0.0013 Score=53.99 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=57.3
Q ss_pred cCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccCh-HHHHHHHhcCcccceeeccCCCCCCH-HHHHHHHHc
Q 016420 112 YGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTD-VGLEILASTCSTLMRVNLAYCLHISD-CGLRALSQG 189 (390)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~ 189 (390)
.+++||.|.++.+......++..++..+|+|++|++++|.+.. ..+..+ +.+++|..|++.+|.-..- .--..+...
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-KELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-hhhcchhhhhcccCCccccccHHHHHHHH
Confidence 3478999999887544555677777778999999999886553 223333 2367788888877653221 111334444
Q ss_pred CCCCCEEeccccC
Q 016420 190 CSQLTAVRTSSCR 202 (390)
Q Consensus 190 ~~~L~~L~l~~~~ 202 (390)
+|+|+.|+-....
T Consensus 142 l~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 142 LPSLKYLDGCDVD 154 (260)
T ss_pred hhhhccccccccC
Confidence 7788887755443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.0018 Score=53.67 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=50.6
Q ss_pred ccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCCh-hhHHhhhcCCCccEEE
Q 016420 166 TLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGP-EGIIGIVSGGGLEFLN 244 (390)
Q Consensus 166 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~ 244 (390)
+.++|++-+|. +++. .++..+|.|+.|.++-+...+-..+..| .+|++|+|..|.+.+ +.+..+.++|+|+.|=
T Consensus 20 ~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rC-trLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSVNKISSLAPLQRC-TRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCC-ccHH---HHHHhcccceeEEeeccccccchhHHHH-HHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 44455554443 3332 2233455555555554433222233222 456666666665433 4556667777777776
Q ss_pred ecCCccc-cccchhHhhhhccCCCccEEe
Q 016420 245 VSGMSST-LNGGGLAAIGTGFATRLKTLN 272 (390)
Q Consensus 245 l~~~~~~-~~~~~~~~~~~~~~~~L~~L~ 272 (390)
|..+... ..+..........+|+|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 6554322 122223333344577777775
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.02 E-value=0.0078 Score=47.59 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=62.4
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChH--HHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDV--GLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCS 191 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 191 (390)
.+...++|+++.... ...+.+++.|..|.+.+|+++.- .+..+ +|+|..|.+.++.-..-..+..++. ||
T Consensus 42 d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~pLa~-~p 113 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDPLAS-CP 113 (233)
T ss_pred cccceecccccchhh----cccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcchhcc-CC
Confidence 456667776643111 11234568889999988866542 33333 6889999998776433345556655 88
Q ss_pred CCCEEeccccCccCcccc----cccCCCCCeEEeec
Q 016420 192 QLTAVRTSSCRTVTGIGF----NGCSPTLAYIDAES 223 (390)
Q Consensus 192 ~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~ 223 (390)
.|+.|.+.+++....... ....|+|+.|++..
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 999998887664433332 23346666666654
No 66
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.89 E-value=0.0043 Score=52.69 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=34.9
Q ss_pred CCCcCCCCC----HHHHHHHHhhCCCccchhHHhhhhhhhHhhc
Q 016420 8 GKTSIMDLP----DDCLCFIFQWLDCGTDCESFGLTCHRWLDIQ 47 (390)
Q Consensus 8 ~~~~~~~LP----~evl~~If~~L~~~~~~~~~~~vcr~w~~~~ 47 (390)
+.|.++.|| ++|-+.||+||+. .++..+-+||++|+++.
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~-~sLc~celv~k~W~r~l 113 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDA-LSLCACELVCKEWKRVL 113 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcch-hhhhHHHHHHHHHHHHh
Confidence 346778999 9999999999997 89999999999999974
No 67
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.83 E-value=0.0045 Score=52.07 Aligned_cols=37 Identities=35% Similarity=0.682 Sum_probs=30.4
Q ss_pred cCCCCCHHHHHHHHhhC-----CCccchhHHhhhhhhhHhhcc
Q 016420 11 SIMDLPDDCLCFIFQWL-----DCGTDCESFGLTCHRWLDIQN 48 (390)
Q Consensus 11 ~~~~LP~evl~~If~~L-----~~~~~~~~~~~vcr~w~~~~~ 48 (390)
.|..||+|||..||... +. .++..+++|||.|+..+.
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~-rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDL-RSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcch-hhHHHhHhhHHHHHHHHc
Confidence 46789999999999754 43 677899999999998753
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.58 E-value=0.034 Score=49.89 Aligned_cols=171 Identities=13% Similarity=0.212 Sum_probs=93.5
Q ss_pred hcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCcc
Q 016420 162 STCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLE 241 (390)
Q Consensus 162 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 241 (390)
..+++++.|++++|. +..- ..-.++|++|.+.+|..+.... ...+++|++|.+++|.... .+ .+.|+
T Consensus 49 ~~~~~l~~L~Is~c~-L~sL-----P~LP~sLtsL~Lsnc~nLtsLP-~~LP~nLe~L~Ls~Cs~L~----sL--P~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCD-IESL-----PVLPNELTEITIENCNNLTTLP-GSIPEGLEKLTVCHCPEIS----GL--PESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCC-Cccc-----CCCCCCCcEEEccCCCCcccCC-chhhhhhhheEccCccccc----cc--ccccc
Confidence 347889999998873 3321 1223369999998877653321 1235689999998874211 11 23678
Q ss_pred EEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcC-CCCceeecccccCCChhHHHHHhhcCCCC
Q 016420 242 FLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGC-PLLEEWNLSLCHEVRFPGWASVGLNCNNL 320 (390)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 320 (390)
.|++.+... ..+. ...++|+.|.+.+........+. ..+ ++|+.|.+++|..+... ..+ -.+|
T Consensus 116 ~L~L~~n~~----~~L~----~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~LP--~~L---P~SL 179 (426)
T PRK15386 116 SLEIKGSAT----DSIK----NVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNIILP--EKL---PESL 179 (426)
T ss_pred eEEeCCCCC----cccc----cCcchHhheeccccccccccccc---cccCCcccEEEecCCCcccCc--ccc---cccC
Confidence 888754321 1111 12457888887543211111111 113 57999999988744211 011 1489
Q ss_pred CeEEcccccccCc-hHHHHHHHcCCCCceeeccccCCcCChHHHHHH
Q 016420 321 EKLHVNRCRNLCD-RGLQALRDGCKQLLILYANKKNSRVSSTAWELF 366 (390)
Q Consensus 321 ~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~~l 366 (390)
+.|.++.+...+- .....+. +++ .|.+.+ |-+++.+.+..-
T Consensus 180 k~L~ls~n~~~sLeI~~~sLP---~nl-~L~f~n-~lkL~~~~f~d~ 221 (426)
T PRK15386 180 QSITLHIEQKTTWNISFEGFP---DGL-DIDLQN-SVLLSPDVFKDK 221 (426)
T ss_pred cEEEecccccccccCcccccc---ccc-Eechhh-hcccCHHHhhcc
Confidence 9999876521110 0111121 455 788888 777776655433
No 69
>PLN03150 hypothetical protein; Provisional
Probab=95.43 E-value=0.05 Score=52.72 Aligned_cols=87 Identities=18% Similarity=0.017 Sum_probs=55.7
Q ss_pred cCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcC
Q 016420 212 CSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGC 291 (390)
Q Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 291 (390)
..++|+.|++++|.+....+..+..+++|+.|+++++....... -....+++|+.|+++++. ++......+....
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP----~~l~~L~~L~~L~Ls~N~-l~g~iP~~l~~~~ 514 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP----ESLGQLTSLRILNLNGNS-LSGRVPAALGGRL 514 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc----hHHhcCCCCCEEECcCCc-ccccCChHHhhcc
Confidence 34678888888888777666677888888888888765331111 122357888889888876 5543333333333
Q ss_pred CCCceeeccccc
Q 016420 292 PLLEEWNLSLCH 303 (390)
Q Consensus 292 ~~L~~L~l~~~~ 303 (390)
.++..+++.++.
T Consensus 515 ~~~~~l~~~~N~ 526 (623)
T PLN03150 515 LHRASFNFTDNA 526 (623)
T ss_pred ccCceEEecCCc
Confidence 456667766543
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.25 E-value=0.02 Score=28.38 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=11.0
Q ss_pred CCCCeEEecccccChHHHHHH
Q 016420 140 SSLTSISLYRCNVTDVGLEIL 160 (390)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l 160 (390)
++|++|+|++|.+++.++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 556666666666655555544
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.17 E-value=0.022 Score=52.02 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=14.9
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCceeeccc
Q 016420 265 ATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSL 301 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 301 (390)
.++++.|+++++. +++... .....+++.|++++
T Consensus 254 l~~l~~L~~s~n~-i~~i~~---~~~~~~l~~L~~s~ 286 (394)
T COG4886 254 LSNLETLDLSNNQ-ISSISS---LGSLTNLRELDLSG 286 (394)
T ss_pred ccccceecccccc-cccccc---ccccCccCEEeccC
Confidence 4445555555554 333221 22244555555554
No 72
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.92 E-value=0.017 Score=50.68 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=22.1
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHhcCCCCceeeccccc
Q 016420 264 FATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCH 303 (390)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 303 (390)
...+|..|++.+++ +. .+..+..+|.+|++|.+.+++
T Consensus 503 nm~nL~tLDL~nNd-lq--~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 503 NMRNLTTLDLQNND-LQ--QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhhcceeccCCCc-hh--hCChhhccccceeEEEecCCc
Confidence 45667777776655 22 223345567777777777654
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.86 E-value=0.017 Score=47.61 Aligned_cols=88 Identities=22% Similarity=0.198 Sum_probs=59.4
Q ss_pred hCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccCh--HHHHHHHhc
Q 016420 86 RFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTD--VGLEILAST 163 (390)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~l~~~ 163 (390)
.+++|+.|.++....-....+..++..+|+|++++++++..-.-..+..+. .+++|.+|++.+|..+. ..-..+...
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh-hhcchhhhhcccCCccccccHHHHHHHH
Confidence 357889999986543444556777778899999999997632233444433 37889999999994432 123345555
Q ss_pred CcccceeeccC
Q 016420 164 CSTLMRVNLAY 174 (390)
Q Consensus 164 ~~~L~~L~l~~ 174 (390)
+|+|+.|+-..
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 78888887544
No 74
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.81 E-value=0.054 Score=31.63 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=15.3
Q ss_pred CCCeEEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 215 TLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 215 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
+|++|++++|.+.+-. ..+..+++|+.|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP-PELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccC-chHhCCCCCCEEEecCC
Confidence 4555555555544321 12555555555555554
No 75
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.58 E-value=0.039 Score=50.42 Aligned_cols=171 Identities=20% Similarity=0.083 Sum_probs=85.4
Q ss_pred CCCCeEEecccccChHHHHHHHhcC-cccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCe
Q 016420 140 SSLTSISLYRCNVTDVGLEILASTC-STLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAY 218 (390)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 218 (390)
+.++.|.+.++.+++- ....... ++|+.|+++.+. +.. +..-...+|+|+.|++.++....-....+..++|+.
T Consensus 116 ~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~N~-i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSDNK-IES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCcccccC--ccccccchhhcccccccccc-hhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 5677777777644432 1122223 267777776553 222 111223477777777777654333333324567777
Q ss_pred EEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceee
Q 016420 219 IDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWN 298 (390)
Q Consensus 219 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 298 (390)
|+++++.+...... +.....|++|.+.+......... .....++..|.+.++. +.+. ......+++++.|+
T Consensus 191 L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~-----~~~~~~l~~l~l~~n~-~~~~--~~~~~~l~~l~~L~ 261 (394)
T COG4886 191 LDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSS-----LSNLKNLSGLELSNNK-LEDL--PESIGNLSNLETLD 261 (394)
T ss_pred eeccCCccccCchh-hhhhhhhhhhhhcCCcceecchh-----hhhcccccccccCCce-eeec--cchhccccccceec
Confidence 77777765432111 01222356666655421111111 1234555555555544 2221 12334466788888
Q ss_pred cccccCCChhHHHHHhhcCCCCCeEEcccc
Q 016420 299 LSLCHEVRFPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 299 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
++++. +++... .....+|+.|++++.
T Consensus 262 ~s~n~-i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 262 LSNNQ-ISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccc-cccccc---ccccCccCEEeccCc
Confidence 87753 333222 223567888888765
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.89 E-value=0.055 Score=26.72 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=8.7
Q ss_pred CCCCeEEcccccccCchHHHHH
Q 016420 318 NNLEKLHVNRCRNLCDRGLQAL 339 (390)
Q Consensus 318 ~~L~~L~l~~~~~i~~~~~~~l 339 (390)
++|++|+|++| .|++.++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 34555555544 2444444433
No 77
>PF13013 F-box-like_2: F-box-like domain
Probab=93.11 E-value=0.09 Score=37.53 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=25.5
Q ss_pred cCCCCCHHHHHHHHhhCCCccchhHHhhhhh
Q 016420 11 SIMDLPDDCLCFIFQWLDCGTDCESFGLTCH 41 (390)
Q Consensus 11 ~~~~LP~evl~~If~~L~~~~~~~~~~~vcr 41 (390)
.+.+||.||+..||.+.+. .+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~-~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCND-PILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCc-HHHHHHHHHHH
Confidence 4789999999999999996 67766777777
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.97 E-value=0.22 Score=25.66 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=11.6
Q ss_pred CCCCeEEecccccChHHHHHHH
Q 016420 140 SSLTSISLYRCNVTDVGLEILA 161 (390)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l~ 161 (390)
++|++|+|++|.+++.+...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 3455555555555555555443
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.19 E-value=0.047 Score=50.17 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=52.5
Q ss_pred CCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCe
Q 016420 139 CSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAY 218 (390)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 218 (390)
+..++.+.+..+.+.. ...-...+.+|+.|++.++. + ..+......+++|++|+++++......++.. .+.|+.
T Consensus 71 l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~-i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~-l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNK-I--EKIENLLSSLVNLQVLDLSFNKITKLEGLST-LTLLKE 144 (414)
T ss_pred hHhHHhhccchhhhhh--hhcccccccceeeeeccccc-h--hhcccchhhhhcchheeccccccccccchhh-ccchhh
Confidence 4555555555554332 11112235778888886653 2 2233323347788888887765444333332 234777
Q ss_pred EEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 219 IDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 219 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
|++.+|.+... ..+..++.|+.++++++
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYN 172 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcc
Confidence 77777765432 12222444555555443
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.45 E-value=0.38 Score=24.78 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=9.8
Q ss_pred CCCeEEcccccccCchHHHHHH
Q 016420 319 NLEKLHVNRCRNLCDRGLQALR 340 (390)
Q Consensus 319 ~L~~L~l~~~~~i~~~~~~~l~ 340 (390)
+|++|+++++ .+++++...+.
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALA 23 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHH
Confidence 4445555544 34444444443
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.44 E-value=0.095 Score=48.18 Aligned_cols=102 Identities=22% Similarity=0.084 Sum_probs=47.8
Q ss_pred CCCCCeEEeeccCCChhhHHh-hhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcC
Q 016420 213 SPTLAYIDAESCQLGPEGIIG-IVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGC 291 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 291 (390)
..+|+.|++..|.+... .. +..+++|+.|+++++.. ....++. .++.|+.|++.++. ++... . +..+
T Consensus 94 ~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I-~~i~~l~-----~l~~L~~L~l~~N~-i~~~~--~-~~~l 161 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKI-TKLEGLS-----TLTLLKELNLSGNL-ISDIS--G-LESL 161 (414)
T ss_pred ccceeeeeccccchhhc--ccchhhhhcchheecccccc-ccccchh-----hccchhhheeccCc-chhcc--C-Cccc
Confidence 35677777777664332 22 44455666666655421 1122222 24446666666665 43211 1 1114
Q ss_pred CCCceeecccccCCChhHHHHHhhcCCCCCeEEcccc
Q 016420 292 PLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
++|+.++++++. +.+..-.. ...+.+++.+.+.++
T Consensus 162 ~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 162 KSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred hhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCC
Confidence 556666665542 22111100 223456666666655
No 82
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.33 E-value=0.095 Score=38.99 Aligned_cols=103 Identities=20% Similarity=0.158 Sum_probs=54.3
Q ss_pred CCeEEeeccCC--ChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 216 LAYIDAESCQL--GPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 216 L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
+..+++++|.+ -.+.+..+.....|...+++++....-+..+. ..++.++.|++.++. +++.... ++ .+|.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft----~kf~t~t~lNl~~ne-isdvPeE-~A-am~a 101 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT----IKFPTATTLNLANNE-ISDVPEE-LA-AMPA 101 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh----hccchhhhhhcchhh-hhhchHH-Hh-hhHH
Confidence 44455555542 23444555666667666766654322222222 235677778887776 6655444 33 3788
Q ss_pred CceeecccccCCChhHHHHHhhcCCCCCeEEcccc
Q 016420 294 LEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
|+.|+++++.... ..+.+++ +.+|-.|+..++
T Consensus 102 Lr~lNl~~N~l~~--~p~vi~~-L~~l~~Lds~~n 133 (177)
T KOG4579|consen 102 LRSLNLRFNPLNA--EPRVIAP-LIKLDMLDSPEN 133 (177)
T ss_pred hhhcccccCcccc--chHHHHH-HHhHHHhcCCCC
Confidence 8888887754221 1222222 345555555544
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.26 E-value=0.074 Score=39.55 Aligned_cols=37 Identities=14% Similarity=0.041 Sum_probs=19.0
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCcc
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSS 250 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 250 (390)
+|.++.|++.+|.+.+.... ++.++.|+.|+++.+..
T Consensus 76 f~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 76 FPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPL 112 (177)
T ss_pred cchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCcc
Confidence 34555555555555443222 55555566665555443
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=87.68 E-value=0.19 Score=47.49 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=36.6
Q ss_pred CCCCcCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhcc
Q 016420 7 DGKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQN 48 (390)
Q Consensus 7 ~~~~~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~ 48 (390)
-..+.+..||.|+...||.||+. +++..+++||+.|+.+..
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~-~~l~~~~~v~~~w~~~~~ 143 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDG-RDLLAVRQVCRNWNKLLD 143 (537)
T ss_pred cccchhhcccchhcccccccCCH-HHhhhhhhhcchhhhhhh
Confidence 35678889999999999999997 889999999999999754
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.40 E-value=1.6 Score=40.52 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=60.4
Q ss_pred HHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc--ccChH-HHHHHHhcCcccceeeccCCCCCCH--
Q 016420 106 LNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC--NVTDV-GLEILASTCSTLMRVNLAYCLHISD-- 180 (390)
Q Consensus 106 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~-- 180 (390)
+..+....+.+..++|+++.-..-+.+..+....|+|+.|+|++| .+... .+..+ ....|++|.+.++.-.++
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence 344445568888888888765566777778888899999999987 33221 22222 145688888887653222
Q ss_pred ---HHHHHHHHcCCCCCEEe
Q 016420 181 ---CGLRALSQGCSQLTAVR 197 (390)
Q Consensus 181 ---~~l~~l~~~~~~L~~L~ 197 (390)
+-+.++.+.+|.|..|+
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 34567777789888876
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.14 E-value=2.1 Score=39.80 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=17.1
Q ss_pred cCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccc
Q 016420 290 GCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
+.|.+..++|+++....-+.+..+.+..|+|+.|+|+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344444444444333333334444444445555554443
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=83.10 E-value=0.95 Score=20.12 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.1
Q ss_pred CCCeEEeccc
Q 016420 141 SLTSISLYRC 150 (390)
Q Consensus 141 ~L~~L~l~~~ 150 (390)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
No 88
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=80.43 E-value=1.1 Score=31.53 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.5
Q ss_pred CCcCCCCCHHHHHHHHhhCCCccchhH
Q 016420 9 KTSIMDLPDDCLCFIFQWLDCGTDCES 35 (390)
Q Consensus 9 ~~~~~~LP~evl~~If~~L~~~~~~~~ 35 (390)
...|..||.|+-..|+++|+. +|+..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~-~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSN-KDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCH-HHHHH
Confidence 478999999999999999996 77654
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=78.59 E-value=1.2 Score=33.02 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=2.6
Q ss_pred CccEEecC
Q 016420 267 RLKTLNLR 274 (390)
Q Consensus 267 ~L~~L~l~ 274 (390)
+|+.+.+.
T Consensus 104 ~l~~i~~~ 111 (129)
T PF13306_consen 104 NLKEINIP 111 (129)
T ss_dssp T--EEE-T
T ss_pred CceEEEEC
Confidence 55555554
No 90
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=68.76 E-value=3.9 Score=20.61 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=9.9
Q ss_pred CCeEEecccccChH-HHHHHHhcC
Q 016420 142 LTSISLYRCNVTDV-GLEILASTC 164 (390)
Q Consensus 142 L~~L~l~~~~~~~~-~~~~l~~~~ 164 (390)
|++|.|....+.++ .+..+...|
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~C 25 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGC 25 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccC
Confidence 45555554433222 344444433
No 91
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=64.46 E-value=4.1 Score=19.37 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=7.1
Q ss_pred CCCeEEecccccC
Q 016420 141 SLTSISLYRCNVT 153 (390)
Q Consensus 141 ~L~~L~l~~~~~~ 153 (390)
+|++|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3566666666443
No 92
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=64.44 E-value=8.2 Score=32.37 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=32.4
Q ss_pred CCCcCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhh
Q 016420 8 GKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDI 46 (390)
Q Consensus 8 ~~~~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~ 46 (390)
....+.+||.|++..|+.+|+...|+..+++|-.....+
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l 236 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKL 236 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHH
Confidence 355788999999999999999999999888876655554
No 93
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=58.82 E-value=45 Score=29.31 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=60.9
Q ss_pred hhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHH---cCCCccEEEcCCCCCCC--hHHHHHHHHhCCCCCeEEecccc
Q 016420 77 SFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQN---YGSKLQTLYLDCCFQIT--DNGLSVIATGCSSLTSISLYRCN 151 (390)
Q Consensus 77 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~~L~~L~l~~~~ 151 (390)
...+.++-..-+.+..+++++...++...+..+.. ...+++...+.+...-. ...+......++.|++|++.++.
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnF 266 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNF 266 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccc
Confidence 34455555566888888888777777766665533 44666666666643211 12333445567888888888888
Q ss_pred cChHHHHHHHhcC---cccceeeccC
Q 016420 152 VTDVGLEILASTC---STLMRVNLAY 174 (390)
Q Consensus 152 ~~~~~~~~l~~~~---~~L~~L~l~~ 174 (390)
|+..++.++...+ ..|..+.+.+
T Consensus 267 Itg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 267 ITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred cccHHHHHHHHHHhccchhhHhhhhh
Confidence 8888777665543 3455555543
No 94
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=58.26 E-value=26 Score=25.64 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=4.0
Q ss_pred CCCCceeec
Q 016420 291 CPLLEEWNL 299 (390)
Q Consensus 291 ~~~L~~L~l 299 (390)
+++|+.+.+
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 445555544
No 95
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=53.97 E-value=11 Score=32.99 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=31.5
Q ss_pred CcCCCCCHHHHHHHHhhCCCccc-------hhHHhhhhhhhHhhc
Q 016420 10 TSIMDLPDDCLCFIFQWLDCGTD-------CESFGLTCHRWLDIQ 47 (390)
Q Consensus 10 ~~~~~LP~evl~~If~~L~~~~~-------~~~~~~vcr~w~~~~ 47 (390)
..|..||.|.|..|..+....++ ..+++-||+.|+...
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 57889999999999998865443 467889999999863
No 96
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=52.56 E-value=44 Score=29.37 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCC---CCeEEecccccCh---HHHHHHHhcCcccceeeccCCCCC
Q 016420 105 GLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSS---LTSISLYRCNVTD---VGLEILASTCSTLMRVNLAYCLHI 178 (390)
Q Consensus 105 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~---L~~L~l~~~~~~~---~~~~~l~~~~~~L~~L~l~~~~~~ 178 (390)
.+..+...-++++..++++...++...+..+...+.+ .+...+.+...++ ..+..+.+.++.|+.|++.++ .+
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn-FI 267 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN-FI 267 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc-cc
Confidence 4455555668888888888877887777666554443 3333333333333 234455666788899988776 48
Q ss_pred CHHHHHHHHHcCC
Q 016420 179 SDCGLRALSQGCS 191 (390)
Q Consensus 179 ~~~~l~~l~~~~~ 191 (390)
+..++.++...++
T Consensus 268 tg~gi~a~~~al~ 280 (353)
T KOG3735|consen 268 TGLGIMALLRALQ 280 (353)
T ss_pred ccHHHHHHHHHHh
Confidence 8888877766544
No 97
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=50.49 E-value=13 Score=18.27 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=6.2
Q ss_pred CCCCeEEeccc
Q 016420 140 SSLTSISLYRC 150 (390)
Q Consensus 140 ~~L~~L~l~~~ 150 (390)
++|+.|++.+|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00369 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 45556666555
No 98
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=50.49 E-value=13 Score=18.27 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=6.2
Q ss_pred CCCCeEEeccc
Q 016420 140 SSLTSISLYRC 150 (390)
Q Consensus 140 ~~L~~L~l~~~ 150 (390)
++|+.|++.+|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00370 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 45556666555
No 99
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=36.87 E-value=10 Score=35.83 Aligned_cols=36 Identities=14% Similarity=-0.103 Sum_probs=17.7
Q ss_pred CCEEeccccCccCcccccccCCCCCeEEeeccCCCh
Q 016420 193 LTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGP 228 (390)
Q Consensus 193 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 228 (390)
|..|+++.+....-..-+..+..|++|.|.+|.+..
T Consensus 213 Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 555555544322221112334566777777766543
No 100
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=36.25 E-value=26 Score=25.66 Aligned_cols=15 Identities=47% Similarity=0.656 Sum_probs=7.3
Q ss_pred HHHHHhCCCCCeEEec
Q 016420 133 SVIATGCSSLTSISLY 148 (390)
Q Consensus 133 ~~l~~~~~~L~~L~l~ 148 (390)
...+..|+.|.. ++.
T Consensus 54 ~~mF~~~~~l~~-dls 68 (120)
T PF03382_consen 54 SGMFAGCSSLNQ-DLS 68 (120)
T ss_pred HHHHhhhhhcCC-Ccc
Confidence 344444555555 443
No 101
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=31.46 E-value=16 Score=34.52 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=8.3
Q ss_pred cCCCccEEecCCCC
Q 016420 264 FATRLKTLNLRMCR 277 (390)
Q Consensus 264 ~~~~L~~L~l~~~~ 277 (390)
...+|++|.|.++.
T Consensus 232 ~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 232 KMRHLQVLQLENNP 245 (722)
T ss_pred hhhhheeeeeccCC
Confidence 35566666666655
No 102
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=29.20 E-value=47 Score=16.73 Aligned_cols=10 Identities=20% Similarity=0.059 Sum_probs=5.3
Q ss_pred CCCceeeccc
Q 016420 344 KQLLILYANK 353 (390)
Q Consensus 344 ~~L~~L~l~~ 353 (390)
.+|+.|++++
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00365 2 TNLEELDLSQ 11 (26)
T ss_pred CccCEEECCC
Confidence 3455555555
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=25.83 E-value=44 Score=16.90 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=7.8
Q ss_pred CCCCeEEeeccCC
Q 016420 214 PTLAYIDAESCQL 226 (390)
Q Consensus 214 ~~L~~L~l~~~~~ 226 (390)
++|+.|++++|.+
T Consensus 2 ~~L~~L~vs~N~L 14 (26)
T smart00364 2 PSLKELNVSNNQL 14 (26)
T ss_pred cccceeecCCCcc
Confidence 4566666666653
No 104
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=24.73 E-value=2.8e+02 Score=20.54 Aligned_cols=11 Identities=9% Similarity=0.301 Sum_probs=5.2
Q ss_pred CCCCCeEEccc
Q 016420 317 CNNLEKLHVNR 327 (390)
Q Consensus 317 ~~~L~~L~l~~ 327 (390)
+++++.+.+.+
T Consensus 67 Wk~~k~~~i~~ 77 (142)
T PF01827_consen 67 WKNAKEFKIGG 77 (142)
T ss_pred hceeheeEecc
Confidence 44445554443
Done!