Query 016420
Match_columns 390
No_of_seqs 243 out of 2939
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 13:17:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 5.7E-33 1.9E-37 265.3 25.8 362 8-377 2-438 (594)
2 3ogk_B Coronatine-insensitive 100.0 2.6E-32 9E-37 260.5 25.4 354 13-374 14-439 (592)
3 2ast_B S-phase kinase-associat 100.0 1.3E-30 4.4E-35 231.1 19.2 304 8-387 5-312 (336)
4 2p1m_B Transport inhibitor res 99.9 4E-23 1.4E-27 197.2 25.2 290 78-378 201-538 (594)
5 3ogk_B Coronatine-insensitive 99.9 2.7E-23 9.3E-28 198.2 24.0 236 136-378 289-545 (592)
6 1z7x_W Ribonuclease inhibitor; 99.9 4E-20 1.4E-24 170.9 26.1 283 79-371 104-423 (461)
7 1z7x_W Ribonuclease inhibitor; 99.9 7.7E-20 2.6E-24 168.9 26.0 290 79-379 47-378 (461)
8 2ca6_A RAN GTPase-activating p 99.8 1.1E-17 3.9E-22 150.6 21.1 262 79-372 23-331 (386)
9 2ca6_A RAN GTPase-activating p 99.8 1.2E-17 4E-22 150.5 20.7 160 213-379 121-311 (386)
10 2ast_B S-phase kinase-associat 99.8 2.8E-17 9.5E-22 145.3 18.3 160 86-248 91-257 (336)
11 4fmz_A Internalin; leucine ric 99.7 5E-16 1.7E-20 137.9 19.1 241 84-360 84-325 (347)
12 4fmz_A Internalin; leucine ric 99.7 9.5E-16 3.2E-20 136.0 20.0 253 84-374 62-314 (347)
13 3goz_A Leucine-rich repeat-con 99.7 6.5E-16 2.2E-20 137.7 17.9 90 267-360 197-298 (362)
14 3goz_A Leucine-rich repeat-con 99.7 7.2E-16 2.5E-20 137.5 17.8 251 79-334 13-299 (362)
15 3rgz_A Protein brassinosteroid 99.6 3.9E-17 1.3E-21 159.8 1.2 254 84-353 96-352 (768)
16 3e4g_A ATP synthase subunit S, 99.6 6.9E-16 2.4E-20 119.6 7.4 109 265-377 60-173 (176)
17 3v47_A TOLL-like receptor 5B a 99.6 2.4E-16 8.2E-21 145.3 3.8 83 265-353 322-404 (455)
18 1o6v_A Internalin A; bacterial 99.6 2E-14 7E-19 132.6 16.5 240 84-360 86-345 (466)
19 1o6v_A Internalin A; bacterial 99.6 7.2E-14 2.5E-18 128.9 18.0 242 84-360 108-367 (466)
20 2id5_A Lingo-1, leucine rich r 99.6 5E-16 1.7E-20 143.9 2.9 130 214-353 200-329 (477)
21 3v47_A TOLL-like receptor 5B a 99.6 2.6E-15 8.8E-20 138.3 7.5 106 238-353 275-380 (455)
22 3o6n_A APL1; leucine-rich repe 99.6 1.6E-15 5.5E-20 136.7 5.4 273 82-380 63-373 (390)
23 2id5_A Lingo-1, leucine rich r 99.5 8E-16 2.7E-20 142.6 1.5 258 84-360 52-310 (477)
24 1ozn_A Reticulon 4 receptor; N 99.5 5.2E-15 1.8E-19 127.4 5.8 203 114-353 32-234 (285)
25 3t6q_A CD180 antigen; protein- 99.5 3.7E-15 1.3E-19 142.4 4.7 211 164-386 375-591 (606)
26 3o53_A Protein LRIM1, AGAP0063 99.5 1E-15 3.6E-20 133.8 0.7 247 77-353 23-271 (317)
27 3oja_B Anopheles plasmodium-re 99.5 3.4E-15 1.2E-19 142.0 3.6 267 81-373 68-372 (597)
28 3un9_A NLR family member X1; l 99.5 8.4E-13 2.9E-17 117.4 18.4 73 114-188 72-148 (372)
29 2z80_A TOLL-like receptor 2, v 99.5 3.3E-14 1.1E-18 126.3 9.1 257 88-360 52-315 (353)
30 2z66_A Variable lymphocyte rec 99.5 2E-15 6.7E-20 131.5 0.7 185 190-388 100-294 (306)
31 2z81_A CD282 antigen, TOLL-lik 99.5 3.5E-14 1.2E-18 134.0 9.2 160 85-249 47-207 (549)
32 1ogq_A PGIP-2, polygalacturona 99.5 3.1E-16 1E-20 136.9 -4.7 252 88-358 50-304 (313)
33 3o53_A Protein LRIM1, AGAP0063 99.5 1.2E-14 4E-19 127.1 5.2 237 106-371 26-262 (317)
34 4ecn_A Leucine-rich repeat pro 99.5 1.4E-14 4.9E-19 141.5 6.2 206 86-302 489-707 (876)
35 3t6q_A CD180 antigen; protein- 99.5 3E-15 1E-19 143.0 1.2 281 85-384 275-563 (606)
36 3rgz_A Protein brassinosteroid 99.5 9.7E-16 3.3E-20 150.0 -2.4 130 214-353 394-523 (768)
37 4fcg_A Uncharacterized protein 99.5 7.2E-15 2.5E-19 128.9 3.3 129 213-353 182-310 (328)
38 3vq2_A TLR4, TOLL-like recepto 99.5 3.9E-15 1.3E-19 142.2 0.6 204 139-356 349-556 (606)
39 3o6n_A APL1; leucine-rich repe 99.5 1.5E-14 5.2E-19 130.4 3.6 136 87-229 44-180 (390)
40 2z7x_B TOLL-like receptor 1, v 99.5 2.9E-14 1E-18 133.6 5.5 110 82-203 39-150 (520)
41 2z81_A CD282 antigen, TOLL-lik 99.5 1.1E-13 3.7E-18 130.7 8.8 62 187-248 192-261 (549)
42 1xku_A Decorin; proteoglycan, 99.5 3E-14 1E-18 125.3 4.7 35 214-248 192-226 (330)
43 2z7x_B TOLL-like receptor 1, v 99.4 9E-14 3.1E-18 130.3 7.0 57 292-353 421-477 (520)
44 3vq2_A TLR4, TOLL-like recepto 99.4 1.8E-14 6.2E-19 137.6 2.2 252 84-359 281-534 (606)
45 1ogq_A PGIP-2, polygalacturona 99.4 9.2E-15 3.1E-19 127.5 -0.0 226 114-359 50-281 (313)
46 1ozn_A Reticulon 4 receptor; N 99.4 5.3E-14 1.8E-18 121.1 4.6 209 87-308 31-241 (285)
47 4eco_A Uncharacterized protein 99.4 1.8E-14 6.2E-19 137.8 1.4 87 86-176 247-341 (636)
48 3un9_A NLR family member X1; l 99.4 5.3E-12 1.8E-16 112.2 16.2 192 139-361 71-285 (372)
49 3zyi_A Leucine-rich repeat-con 99.4 3.5E-14 1.2E-18 130.5 1.9 129 113-248 98-228 (452)
50 3oja_B Anopheles plasmodium-re 99.4 3.6E-14 1.2E-18 135.0 2.0 136 87-229 50-186 (597)
51 3zyj_A Leucine-rich repeat-con 99.4 3E-14 1E-18 130.5 1.3 225 88-329 64-290 (440)
52 2z80_A TOLL-like receptor 2, v 99.4 9.4E-14 3.2E-18 123.4 4.4 239 83-332 71-314 (353)
53 1h6u_A Internalin H; cell adhe 99.4 1.8E-12 6.3E-17 112.5 12.4 187 114-328 41-227 (308)
54 3e4g_A ATP synthase subunit S, 99.4 1E-12 3.4E-17 101.9 9.5 105 239-348 62-171 (176)
55 4eco_A Uncharacterized protein 99.4 5.8E-14 2E-18 134.4 3.0 252 82-353 267-545 (636)
56 4ecn_A Leucine-rich repeat pro 99.4 1.3E-13 4.5E-18 134.8 5.3 257 82-353 509-815 (876)
57 2z63_A TOLL-like receptor 4, v 99.4 1.9E-14 6.4E-19 136.5 -1.1 249 83-353 277-527 (570)
58 3oja_A Leucine-rich immune mol 99.4 8.9E-14 3.1E-18 128.6 3.4 239 84-352 30-270 (487)
59 3bz5_A Internalin-J, INLJ; leu 99.4 2.5E-12 8.4E-17 117.9 12.7 231 84-359 60-300 (457)
60 3oja_A Leucine-rich immune mol 99.4 4.3E-14 1.5E-18 130.8 0.9 224 112-364 32-255 (487)
61 1xku_A Decorin; proteoglycan, 99.4 7.8E-14 2.7E-18 122.7 2.4 247 88-359 52-306 (330)
62 4fcg_A Uncharacterized protein 99.4 1.1E-13 3.8E-18 121.4 2.7 157 190-359 126-291 (328)
63 2z66_A Variable lymphocyte rec 99.4 6.5E-14 2.2E-18 121.9 1.2 209 140-362 28-239 (306)
64 2z63_A TOLL-like receptor 4, v 99.4 1.6E-14 5.5E-19 136.9 -2.9 141 213-360 346-508 (570)
65 2ft3_A Biglycan; proteoglycan, 99.4 1.7E-14 5.8E-19 127.0 -2.7 105 88-202 54-158 (332)
66 1ziw_A TOLL-like receptor 3; i 99.4 1.4E-13 4.8E-18 133.2 3.0 136 213-353 479-618 (680)
67 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 7.4E-14 2.5E-18 132.0 -0.1 107 84-202 72-180 (562)
68 1h6u_A Internalin H; cell adhe 99.3 8.8E-12 3E-16 108.3 12.6 190 86-303 39-228 (308)
69 2ra8_A Uncharacterized protein 99.3 1.9E-11 6.5E-16 107.7 14.8 164 183-353 164-339 (362)
70 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 6E-13 2E-17 125.8 5.5 65 84-154 96-160 (562)
71 4glp_A Monocyte differentiatio 99.3 7.1E-13 2.4E-17 115.4 5.3 206 140-360 91-308 (310)
72 1ziw_A TOLL-like receptor 3; i 99.3 1.2E-12 4E-17 126.8 7.3 253 88-353 25-305 (680)
73 3bz5_A Internalin-J, INLJ; leu 99.3 7.3E-12 2.5E-16 114.8 11.6 225 85-353 39-263 (457)
74 1wwl_A Monocyte differentiatio 99.3 2.9E-13 9.8E-18 118.0 1.9 208 138-360 93-310 (312)
75 3zyj_A Leucine-rich repeat-con 99.3 7.7E-13 2.6E-17 121.1 4.2 223 114-353 64-288 (440)
76 3g06_A SSPH2 (leucine-rich rep 99.3 1.3E-11 4.5E-16 116.7 12.7 228 88-367 61-305 (622)
77 1wwl_A Monocyte differentiatio 99.3 6.2E-14 2.1E-18 122.2 -3.3 202 163-377 93-302 (312)
78 3zyi_A Leucine-rich repeat-con 99.3 1E-12 3.4E-17 120.8 4.6 225 114-356 75-301 (452)
79 3j0a_A TOLL-like receptor 5; m 99.3 1.7E-13 5.7E-18 135.6 -3.0 88 85-175 70-158 (844)
80 3j0a_A TOLL-like receptor 5; m 99.2 1.1E-12 3.8E-17 129.7 2.0 106 191-302 266-372 (844)
81 2ft3_A Biglycan; proteoglycan, 99.2 1.4E-12 4.7E-17 114.8 1.9 246 89-364 34-282 (332)
82 4glp_A Monocyte differentiatio 99.2 1.7E-12 5.9E-17 113.0 1.9 210 140-360 64-286 (310)
83 4ezg_A Putative uncharacterize 99.2 1.1E-10 3.7E-15 94.4 12.1 130 214-360 66-195 (197)
84 2z62_A TOLL-like receptor 4, v 99.2 2.5E-12 8.6E-17 110.0 1.7 109 114-227 28-137 (276)
85 3rfs_A Internalin B, repeat mo 99.2 1.8E-11 6.3E-16 104.3 5.7 105 139-248 62-167 (272)
86 1h6t_A Internalin B; cell adhe 99.2 2.7E-10 9.3E-15 97.9 12.0 166 139-328 45-210 (291)
87 4ezg_A Putative uncharacterize 99.1 1.5E-10 5.1E-15 93.5 9.5 103 139-248 43-146 (197)
88 2z62_A TOLL-like receptor 4, v 99.1 5.2E-12 1.8E-16 108.0 0.8 201 88-302 28-234 (276)
89 3rfs_A Internalin B, repeat mo 99.1 7.3E-11 2.5E-15 100.6 6.9 175 139-328 40-215 (272)
90 1h6t_A Internalin B; cell adhe 99.1 8.2E-10 2.8E-14 94.9 11.9 167 113-303 45-211 (291)
91 2o6q_A Variable lymphocyte rec 99.1 4E-11 1.4E-15 102.1 3.4 59 114-175 37-95 (270)
92 1m9s_A Internalin B; cell inva 99.1 5.5E-10 1.9E-14 105.5 11.5 171 138-333 41-211 (605)
93 2o6q_A Variable lymphocyte rec 99.1 6.9E-11 2.4E-15 100.6 4.6 106 140-248 37-143 (270)
94 3g06_A SSPH2 (leucine-rich rep 99.0 1.1E-09 3.7E-14 103.6 11.9 211 86-339 79-304 (622)
95 2xwt_C Thyrotropin receptor; s 99.0 2E-11 6.8E-16 102.0 0.0 128 213-356 104-237 (239)
96 2xwt_C Thyrotropin receptor; s 99.0 1.5E-11 5.2E-16 102.7 -1.3 101 218-329 134-237 (239)
97 1m9s_A Internalin B; cell inva 99.0 1.4E-09 5E-14 102.6 11.8 167 113-303 42-208 (605)
98 1p9a_G Platelet glycoprotein I 99.0 1.8E-10 6.2E-15 99.0 5.0 198 86-303 8-206 (290)
99 2ra8_A Uncharacterized protein 99.0 1.4E-09 4.7E-14 95.9 10.1 151 211-370 169-331 (362)
100 1p9a_G Platelet glycoprotein I 99.0 2.8E-10 9.7E-15 97.7 5.4 198 113-329 9-206 (290)
101 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 2.5E-10 8.6E-15 70.0 3.6 40 8-48 5-44 (53)
102 1jl5_A Outer protein YOPM; leu 99.0 6.6E-10 2.3E-14 101.7 7.1 138 88-249 111-248 (454)
103 1jl5_A Outer protein YOPM; leu 99.0 1.3E-09 4.3E-14 99.9 8.9 52 265-328 236-287 (454)
104 2je0_A Acidic leucine-rich nuc 98.9 2.1E-09 7.1E-14 82.5 8.0 85 264-352 62-148 (149)
105 1io0_A Tropomodulin; LRR prote 98.9 7.3E-08 2.5E-12 76.6 15.8 123 77-201 25-161 (185)
106 3m19_A Variable lymphocyte rec 98.9 1.2E-09 4E-14 91.9 4.5 59 114-175 35-93 (251)
107 1io0_A Tropomodulin; LRR prote 98.9 4.6E-08 1.6E-12 77.8 13.6 94 264-362 63-167 (185)
108 1xeu_A Internalin C; cellular 98.9 7.3E-09 2.5E-13 87.5 9.4 77 214-302 106-182 (263)
109 3m19_A Variable lymphocyte rec 98.9 1.5E-09 5E-14 91.3 4.5 39 113-153 58-96 (251)
110 2je0_A Acidic leucine-rich nuc 98.8 1.6E-08 5.4E-13 77.5 9.5 105 214-326 42-148 (149)
111 2ell_A Acidic leucine-rich nuc 98.8 1.5E-08 5.2E-13 79.3 8.6 85 265-353 70-156 (168)
112 1xeu_A Internalin C; cellular 98.8 1.5E-08 5.1E-13 85.6 9.0 121 164-302 40-160 (263)
113 2ell_A Acidic leucine-rich nuc 98.8 6.8E-09 2.3E-13 81.4 5.8 13 316-328 145-157 (168)
114 3cvr_A Invasion plasmid antige 98.8 1.8E-08 6.3E-13 94.1 8.7 95 114-227 59-153 (571)
115 1a9n_A U2A', U2A'; complex (nu 98.7 3E-08 1E-12 78.3 8.6 84 265-353 63-149 (176)
116 2v9t_B SLIT homolog 2 protein 98.7 6.6E-09 2.3E-13 85.3 2.9 130 214-353 32-161 (220)
117 2xot_A Amphoterin-induced prot 98.6 3.5E-08 1.2E-12 87.6 5.3 87 214-303 112-200 (361)
118 1dce_A Protein (RAB geranylger 98.6 4.7E-09 1.6E-13 98.5 -0.5 124 191-325 441-567 (567)
119 4g8a_A TOLL-like receptor 4; l 98.6 8E-08 2.7E-12 92.0 7.9 200 140-351 52-256 (635)
120 1dce_A Protein (RAB geranylger 98.6 7.8E-09 2.7E-13 97.0 0.7 125 214-351 441-567 (567)
121 2o6s_A Variable lymphocyte rec 98.6 7E-08 2.4E-12 78.4 6.2 81 165-247 28-109 (208)
122 2o6s_A Variable lymphocyte rec 98.6 2.9E-08 9.8E-13 80.8 3.8 61 213-277 99-159 (208)
123 4g8a_A TOLL-like receptor 4; l 98.6 8.4E-09 2.9E-13 98.9 0.6 229 87-329 348-578 (635)
124 3e6j_A Variable lymphocyte rec 98.5 5.2E-08 1.8E-12 80.4 4.9 130 213-353 39-168 (229)
125 2v9t_B SLIT homolog 2 protein 98.5 8.1E-08 2.8E-12 78.7 4.7 35 214-248 104-138 (220)
126 1a9n_A U2A', U2A'; complex (nu 98.5 2E-07 6.8E-12 73.5 6.8 13 316-328 138-150 (176)
127 2v70_A SLIT-2, SLIT homolog 2 98.5 3.3E-08 1.1E-12 81.1 1.9 60 214-277 105-164 (220)
128 2xot_A Amphoterin-induced prot 98.5 1.5E-07 5.3E-12 83.4 6.2 108 165-277 39-147 (361)
129 1ds9_A Outer arm dynein; leuci 98.5 8.7E-08 3E-12 77.2 3.8 80 265-350 92-180 (198)
130 3cvr_A Invasion plasmid antige 98.5 7.5E-07 2.6E-11 83.3 10.5 188 88-309 59-246 (571)
131 2v70_A SLIT-2, SLIT homolog 2 98.4 1.1E-07 3.9E-12 77.8 4.2 85 213-303 80-164 (220)
132 3e6j_A Variable lymphocyte rec 98.4 2.1E-07 7.1E-12 76.8 5.7 35 140-175 40-74 (229)
133 4ay9_X Follicle-stimulating ho 98.4 1.6E-08 5.6E-13 89.3 -1.9 223 114-353 30-255 (350)
134 1pgv_A TMD-1, tropomodulin TMD 98.3 1.8E-05 6.1E-10 62.5 14.3 123 77-200 30-166 (197)
135 3sb4_A Hypothetical leucine ri 98.3 3.3E-07 1.1E-11 80.1 3.1 103 213-325 225-328 (329)
136 1ds9_A Outer arm dynein; leuci 98.2 2.8E-07 9.6E-12 74.2 2.1 129 233-377 43-180 (198)
137 3sb4_A Hypothetical leucine ri 98.2 4.3E-07 1.5E-11 79.4 3.3 111 265-386 201-315 (329)
138 1pgv_A TMD-1, tropomodulin TMD 98.2 2.6E-05 8.8E-10 61.6 13.0 35 265-300 97-134 (197)
139 2e31_A FBS1, F-box only protei 98.1 1.2E-06 4E-11 73.6 2.6 40 8-48 47-87 (297)
140 4ay9_X Follicle-stimulating ho 98.0 3.9E-07 1.3E-11 80.4 -1.7 204 140-359 30-237 (350)
141 2wfh_A SLIT homolog 2 protein 98.0 1.3E-05 4.3E-10 64.0 7.3 10 166-175 32-41 (193)
142 1w8a_A SLIT protein; signaling 97.9 2.2E-06 7.5E-11 68.5 1.7 13 265-277 125-137 (192)
143 3l2o_B F-box only protein 4; s 97.9 1.7E-06 5.7E-11 71.8 0.3 38 10-48 3-40 (312)
144 1w8a_A SLIT protein; signaling 97.9 2.2E-05 7.7E-10 62.5 6.7 86 212-303 52-137 (192)
145 2wfh_A SLIT homolog 2 protein 97.9 9.8E-06 3.3E-10 64.7 4.4 13 265-277 125-137 (193)
146 2o6r_A Variable lymphocyte rec 97.9 7.9E-06 2.7E-10 64.3 3.6 60 214-277 76-135 (177)
147 4b8c_D Glucose-repressible alc 97.8 1.7E-05 5.9E-10 76.8 5.8 110 162-281 221-330 (727)
148 2o6r_A Variable lymphocyte rec 97.8 3.7E-05 1.3E-09 60.3 6.7 60 265-328 75-134 (177)
149 4b8c_D Glucose-repressible alc 97.8 2.3E-05 7.9E-10 75.9 6.2 110 135-250 219-328 (727)
150 3v7d_B Cell division control p 97.6 1.3E-05 4.5E-10 73.4 0.8 40 8-48 11-50 (464)
151 3g39_A Variable lymphocyte rec 97.4 0.00023 7.8E-09 55.4 6.1 60 214-277 30-89 (170)
152 2r9u_A Variable lymphocyte rec 97.4 0.00025 8.6E-09 55.4 6.2 83 214-302 33-115 (174)
153 2ovr_B FBW7, F-BOX/WD repeat p 97.4 6.4E-05 2.2E-09 68.4 3.2 41 7-48 14-54 (445)
154 1p22_A F-BOX/WD-repeat protein 97.3 3.2E-05 1.1E-09 70.3 0.2 40 8-48 7-50 (435)
155 3rw6_A Nuclear RNA export fact 97.3 0.00054 1.9E-08 57.1 6.7 83 111-197 167-257 (267)
156 4fdw_A Leucine rich hypothetic 97.2 0.00012 4E-09 65.6 2.3 11 290-300 298-308 (401)
157 3g39_A Variable lymphocyte rec 97.2 0.0011 3.6E-08 51.5 7.5 60 214-277 54-113 (170)
158 2r9u_A Variable lymphocyte rec 97.2 0.0011 3.6E-08 51.7 7.5 60 214-277 57-116 (174)
159 4fdw_A Leucine rich hypothetic 97.1 9.9E-05 3.4E-09 66.1 1.2 219 114-353 157-379 (401)
160 3rw6_A Nuclear RNA export fact 96.9 0.0027 9.3E-08 52.9 7.6 90 81-173 163-259 (267)
161 2ifg_A High affinity nerve gro 96.2 0.012 4.2E-07 51.3 7.8 35 214-248 56-90 (347)
162 2ifg_A High affinity nerve gro 96.2 0.0087 3E-07 52.3 6.5 84 213-303 30-114 (347)
163 4fs7_A Uncharacterized protein 94.9 0.0064 2.2E-07 54.3 0.9 80 264-353 295-375 (394)
164 4fs7_A Uncharacterized protein 93.2 0.027 9.3E-07 50.1 1.6 103 235-353 250-352 (394)
165 4gt6_A Cell surface protein; l 89.6 1.4 4.9E-05 38.8 8.8 123 213-353 264-387 (394)
166 4h09_A Hypothetical leucine ri 87.2 0.59 2E-05 41.0 4.7 123 214-352 217-341 (379)
167 4h09_A Hypothetical leucine ri 84.3 0.53 1.8E-05 41.4 2.8 125 164-301 216-342 (379)
168 4gt6_A Cell surface protein; l 81.6 2 7E-05 37.8 5.6 124 189-327 263-387 (394)
169 3rfe_A Platelet glycoprotein I 79.6 1.5 5.3E-05 31.7 3.4 36 212-247 29-64 (130)
170 3rfe_A Platelet glycoprotein I 55.1 4.6 0.00016 29.1 1.4 35 141-176 32-66 (130)
171 2kwv_A RAD30 homolog B, DNA po 21.3 55 0.0019 18.3 1.7 15 11-25 20-34 (48)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=5.7e-33 Score=265.27 Aligned_cols=362 Identities=18% Similarity=0.287 Sum_probs=214.0
Q ss_pred CCCcCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhccccccceeeeccccc---------ccccCCCCcc------
Q 016420 8 GKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTL---------ITCSSLSQPI------ 72 (390)
Q Consensus 8 ~~~~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~------ 72 (390)
+.+.|+.||+|||.+||+||+..+|+.++++|||+|+++....+..+.+...... .++..+....
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 4688999999999999999994489999999999999986555555544321100 0111111000
Q ss_pred --------hhhhhhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCe
Q 016420 73 --------IDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTS 144 (390)
Q Consensus 73 --------~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 144 (390)
.......+..+...+++|++|+++++. +++..+..+...+++|++|++++|..+++.++..+...|++|++
T Consensus 82 ~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~ 160 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCE
T ss_pred cccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCE
Confidence 011122345566777888888888753 66666777766678888888888766777777777777888888
Q ss_pred EEecccccChHH---HHHHHhcCcccceeeccCCC-CCCHHHHHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCeE
Q 016420 145 ISLYRCNVTDVG---LEILASTCSTLMRVNLAYCL-HISDCGLRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAYI 219 (390)
Q Consensus 145 L~l~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L 219 (390)
|++++|.+++.+ +..+...+++|++|+++++. .++...+..+...+|+|++|++.+|..... ..+....++|++|
T Consensus 161 L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp EECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred EeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence 888877554433 33344456788888887764 466677777777788888888887743332 1222345677777
Q ss_pred EeeccC--CCh---------------------------hhHHhh-hcCCCccEEEecCCccccccchhHhhhhccCCCcc
Q 016420 220 DAESCQ--LGP---------------------------EGIIGI-VSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLK 269 (390)
Q Consensus 220 ~l~~~~--~~~---------------------------~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 269 (390)
++..+. +.. ..+..+ ..+++|++|+++++. ..+.++..+ ...+++|+
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--l~~~~l~~~-~~~~~~L~ 317 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT--VQSYDLVKL-LCQCPKLQ 317 (594)
T ss_dssp ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC--CCHHHHHHH-HTTCTTCC
T ss_pred ccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC--CCHHHHHHH-HhcCCCcC
Confidence 765442 111 111111 134556666665554 222222222 12356666
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCceeec--------ccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHH
Q 016420 270 TLNLRMCRNVGDESIVAIAKGCPLLEEWNL--------SLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRD 341 (390)
Q Consensus 270 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l--------~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 341 (390)
+|++.+| +++.++..+...+++|+.|++ ..+..+++.++..+...|++|+.|.++. ..+++.++..+..
T Consensus 318 ~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~ 394 (594)
T 2p1m_B 318 RLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIAR 394 (594)
T ss_dssp EEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHH
T ss_pred EEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHh
Confidence 6666655 445555555555666666666 2334556666666665566666664443 3566666666665
Q ss_pred cCCCCceeecc-----ccCCcCC----hHHHHHHHhhcCceeEee
Q 016420 342 GCKQLLILYAN-----KKNSRVS----STAWELFKMYRGNVDIKD 377 (390)
Q Consensus 342 ~~~~L~~L~l~-----~~c~~l~----~~~~~~l~~~~~~l~~~~ 377 (390)
.|++|+.|+++ + |+.++ +.++..+...+++++.-.
T Consensus 395 ~~~~L~~L~L~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKA-PDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp HCTTCCEEEEEESSTTC-CCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred hCCCcceeEeecccCCC-cccccCCchhhHHHHHHhhCCCccEEe
Confidence 66667777666 5 66666 566666655666554433
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=2.6e-32 Score=260.50 Aligned_cols=354 Identities=19% Similarity=0.281 Sum_probs=193.8
Q ss_pred CCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhccccccceeeeccccc---------ccccCCCC-------------
Q 016420 13 MDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTL---------ITCSSLSQ------------- 70 (390)
Q Consensus 13 ~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~---------~~~~~l~~------------- 70 (390)
..||+|+|.+||+||+..+|+.+++.|||+|+.+..+.+..+.+...+.. .++..+..
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 48999999999999933589999999999999987666655554322110 11111111
Q ss_pred -cchhhhhhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCC-ccEEEcCCCCCCChHHHHHHHHhCCCCCeEEec
Q 016420 71 -PIIDIRSFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSK-LQTLYLDCCFQITDNGLSVIATGCSSLTSISLY 148 (390)
Q Consensus 71 -~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 148 (390)
.+.......+..+...+++|++|+++++ .+++..+..+...+++ |++|++++|..+++.++..+...|++|++|+++
T Consensus 94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~ 172 (592)
T 3ogk_B 94 ENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172 (592)
T ss_dssp TTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECT
T ss_pred ccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECc
Confidence 0011112234555667777777777765 4666666666554444 788888777656666676666677888888887
Q ss_pred ccccChHH---HHHHHhcCcccceeeccCCCC--CCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeec
Q 016420 149 RCNVTDVG---LEILASTCSTLMRVNLAYCLH--ISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAES 223 (390)
Q Consensus 149 ~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (390)
+|.+++.+ +..+...+++|++|+++++.. ++...+..+...+++|+.|++.++............++|++|+++.
T Consensus 173 ~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp TCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred cccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 77554332 555666677788887766542 2356666666677888888877765333222233345566666653
Q ss_pred cCCC---hhhHHh-----------------------hhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCC
Q 016420 224 CQLG---PEGIIG-----------------------IVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCR 277 (390)
Q Consensus 224 ~~~~---~~~~~~-----------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (390)
+... ...... +..+++|++|+++++. .....+..+ ...+++|++|++.+ .
T Consensus 253 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~--l~~~~~~~~-~~~~~~L~~L~L~~-~ 328 (592)
T 3ogk_B 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL--LETEDHCTL-IQKCPNLEVLETRN-V 328 (592)
T ss_dssp CCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC--CCHHHHHHH-HTTCTTCCEEEEEG-G
T ss_pred cccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc--CCHHHHHHH-HHhCcCCCEEeccC-c
Confidence 2211 111111 2233444555554443 122222111 12345555555542 1
Q ss_pred CCChHHHHHHHhcCCCCceeeccc----------ccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCc
Q 016420 278 NVGDESIVAIAKGCPLLEEWNLSL----------CHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLL 347 (390)
Q Consensus 278 ~~~~~~~~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~ 347 (390)
+.+.++..+...+++|+.|++.+ |+.+++.++..+...|++|++|+++ |..+++.++..+...|++|+
T Consensus 329 -~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~ 406 (592)
T 3ogk_B 329 -IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLC 406 (592)
T ss_dssp -GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCC
T ss_pred -cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCc
Confidence 34444444444455555555552 4445555555544445555555553 22455555555544455555
Q ss_pred eeecc---ccCCcCCh----HHHHHHHhhcCcee
Q 016420 348 ILYAN---KKNSRVSS----TAWELFKMYRGNVD 374 (390)
Q Consensus 348 ~L~l~---~~c~~l~~----~~~~~l~~~~~~l~ 374 (390)
.|+++ . |+.+++ +++..+...+++++
T Consensus 407 ~L~l~~~~~-~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 407 DFRLVLLDR-EERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp EEEEEECSC-CSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred EEEEeecCC-CccccCchHHHHHHHHHHhCCCCC
Confidence 55554 2 334443 34444444444443
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.97 E-value=1.3e-30 Score=231.12 Aligned_cols=304 Identities=21% Similarity=0.251 Sum_probs=195.8
Q ss_pred CCCcCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhccccccceeeecccccccccCCCCcchhhhhhHHHHHHhhC
Q 016420 8 GKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQNLCRRSVQFQCSFTLITCSSLSQPIIDIRSFHVGRLLTRF 87 (390)
Q Consensus 8 ~~~~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 87 (390)
+...|++||+|++.+||+||+. .|+.+++.|||+|+.+......+..+. ..... .. ...+..+
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~-~d~~~~~~vc~~W~~~~~~~~~~~~l~--l~~~~----------~~----~~~~~~~ 67 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCL-PELLKVSGVCKRWYRLASDESLWQTLD--LTGKN----------LH----PDVTGRL 67 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCH-HHHHHTTSSCHHHHHHHTCSTTSSEEE--CTTCB----------CC----HHHHHHH
T ss_pred ccCChhhCCHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhcCchhheeec--ccccc----------CC----HHHHHhh
Confidence 3567899999999999999997 799999999999999863221111111 10000 00 1122233
Q ss_pred --CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCc
Q 016420 88 --QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCS 165 (390)
Q Consensus 88 --~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 165 (390)
++++.+++++.. +..... . ...+++|++|+++++. +++..+......+++|++|++++|.+++.....+.. ++
T Consensus 68 ~~~~l~~L~l~~n~-l~~~~~-~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~ 142 (336)
T 2ast_B 68 LSQGVIAFRCPRSF-MDQPLA-E-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NS 142 (336)
T ss_dssp HHTTCSEEECTTCE-ECSCCC-S-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CT
T ss_pred hhccceEEEcCCcc-ccccch-h-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CC
Confidence 677788777532 111100 0 1235777777777765 666656666666777777777777776666655544 77
Q ss_pred ccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEe
Q 016420 166 TLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNV 245 (390)
Q Consensus 166 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 245 (390)
+|++|++++|..+++.++..+...+++|++|++.+|.. +.+..+..
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~----------------------l~~~~~~~------------ 188 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD----------------------FTEKHVQV------------ 188 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT----------------------CCHHHHHH------------
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC----------------------cChHHHHH------------
Confidence 77777777765566666666565677776666665522 22211111
Q ss_pred cCCccccccchhHhhhhccCC-CccEEecCCCC-CCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeE
Q 016420 246 SGMSSTLNGGGLAAIGTGFAT-RLKTLNLRMCR-NVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKL 323 (390)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (390)
. ...++ +|++|++++|. .+++..+......+++|+.|++++|..+++.....+. .+++|++|
T Consensus 189 --------------~-~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L 252 (336)
T 2ast_B 189 --------------A-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHL 252 (336)
T ss_dssp --------------H-HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEE
T ss_pred --------------H-HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEe
Confidence 1 12356 77777777774 3666666666666888888888887656666665554 46888888
Q ss_pred EcccccccCchHHHHHHHcCCCCceeeccccCCcCChHHHHHHHhhcCceeEeecceeeeCCcc
Q 016420 324 HVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVDIKDEEVMCIGPDW 387 (390)
Q Consensus 324 ~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 387 (390)
++++|..+++.++..+. .+++|+.|++++ | ++++++..+...+|.+++....+..+.|.+
T Consensus 253 ~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~-~--i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 253 SLSRCYDIIPETLLELG-EIPTLKTLQVFG-I--VPDGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp ECTTCTTCCGGGGGGGG-GCTTCCEEECTT-S--SCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred eCCCCCCCCHHHHHHHh-cCCCCCEEeccC-c--cCHHHHHHHHhhCcceEEecccCccccCCc
Confidence 88887667776665554 588888888888 6 888788888777888887777766666653
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=4e-23 Score=197.15 Aligned_cols=290 Identities=22% Similarity=0.247 Sum_probs=212.9
Q ss_pred hHHHHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCC----------------------------CCCh
Q 016420 78 FHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCF----------------------------QITD 129 (390)
Q Consensus 78 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~----------------------------~~~~ 129 (390)
..+..+...+++|++|+++++..+ ..+..+...+++|++|++..+. ....
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG
T ss_pred HHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch
Confidence 334445555666666666654322 2244444455566666544321 1122
Q ss_pred HHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccc--------c
Q 016420 130 NGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSS--------C 201 (390)
Q Consensus 130 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~--------~ 201 (390)
..+..+...+++|++|++++|.+++.++..+...+++|++|++.++ +++.++..+...+++|+.|++.+ +
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence 2233333356888888998888888888887778899999999876 66778888888899999999843 3
Q ss_pred CccCccccc---ccCCCCCeEEeeccCCChhhHHhhh-cCCCccEEEec-----CCccccc---cchhHhhhhccCCCcc
Q 016420 202 RTVTGIGFN---GCSPTLAYIDAESCQLGPEGIIGIV-SGGGLEFLNVS-----GMSSTLN---GGGLAAIGTGFATRLK 269 (390)
Q Consensus 202 ~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~-----~~~~~~~---~~~~~~~~~~~~~~L~ 269 (390)
..+++.++. ..+++|++|.+..+.+.+..+..+. .+++|+.|++. ++..... +.++..+. ..+++|+
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~L~ 435 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV-EHCKDLR 435 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH-HHCTTCC
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH-hhCCCcc
Confidence 344443332 3358999998888889988888876 58999999998 3322221 34554443 3589999
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCcee
Q 016420 270 TLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLIL 349 (390)
Q Consensus 270 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L 349 (390)
+|++++ .+++.++..+...+++|+.|++++|. +++.++..+...|++|++|++++| .+++.++..+...+++|+.|
T Consensus 436 ~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 436 RLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSL 511 (594)
T ss_dssp EEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEE
T ss_pred EEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEE
Confidence 999987 48999999888889999999999874 889999998888999999999999 47888888888889999999
Q ss_pred eccccCCcCChHHHHHHHhhcCceeEeec
Q 016420 350 YANKKNSRVSSTAWELFKMYRGNVDIKDE 378 (390)
Q Consensus 350 ~l~~~c~~l~~~~~~~l~~~~~~l~~~~~ 378 (390)
++++ |+ +++++++.+...+|++++...
T Consensus 512 ~l~~-~~-~~~~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 512 WMSS-CS-VSFGACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp EEES-SC-CBHHHHHHHHHHCTTEEEEEE
T ss_pred eeeC-CC-CCHHHHHHHHHhCCCCEEEEe
Confidence 9999 75 599999999889999876543
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=2.7e-23 Score=198.21 Aligned_cols=236 Identities=19% Similarity=0.219 Sum_probs=181.1
Q ss_pred HHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccc----------cCccC
Q 016420 136 ATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSS----------CRTVT 205 (390)
Q Consensus 136 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~----------~~~~~ 205 (390)
...+++|++|++++|.+++..+..+...+++|++|++.+ .+.+.++..+...|++|++|++.+ |..++
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 334566777777777666666666666677888887762 356677777777788888888884 55555
Q ss_pred cccc---cccCCCCCeEEeeccCCChhhHHhhhc-CCCccEEEecCCc---cccc---cchhHhhhhccCCCccEEecCC
Q 016420 206 GIGF---NGCSPTLAYIDAESCQLGPEGIIGIVS-GGGLEFLNVSGMS---STLN---GGGLAAIGTGFATRLKTLNLRM 275 (390)
Q Consensus 206 ~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~---~~~~---~~~~~~~~~~~~~~L~~L~l~~ 275 (390)
+.++ ...+++|++|++..+.+.+..+..+.. +++|+.|++.++. ...+ +.++..+.. .+++|++|++++
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~-~~~~L~~L~L~~ 445 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI-GCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH-HCTTCCEEEEEC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH-hCCCCCEEEEec
Confidence 4433 234688999999888888888888866 8899999997432 2211 124544433 489999999976
Q ss_pred CC-CCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeecccc
Q 016420 276 CR-NVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKK 354 (390)
Q Consensus 276 ~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 354 (390)
|. .+++..+..+...+++|+.|++++| .+++.++..+...|++|++|++++|. +++.++..+...+++|+.|++++
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~- 522 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQG- 522 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEES-
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcC-
Confidence 54 3788888888888999999999986 48888888888889999999999995 89888988888899999999999
Q ss_pred CCcCChHHHHHHHhhcCceeEeec
Q 016420 355 NSRVSSTAWELFKMYRGNVDIKDE 378 (390)
Q Consensus 355 c~~l~~~~~~~l~~~~~~l~~~~~ 378 (390)
|. +++.+++.+...+|.+++...
T Consensus 523 n~-it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 523 YR-ASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp CB-CCTTCTTGGGGCCTTEEEEEE
T ss_pred Cc-CCHHHHHHHHHhCCCcEEEEe
Confidence 65 999999999988998776543
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=4e-20 Score=170.86 Aligned_cols=283 Identities=16% Similarity=0.196 Sum_probs=195.0
Q ss_pred HHHHHHhhCCCccEEEecCCCCCChhHHHHHHHc----CCCccEEEcCCCCCCChHH---HHHHHHhCCCCCeEEecccc
Q 016420 79 HVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNY----GSKLQTLYLDCCFQITDNG---LSVIATGCSSLTSISLYRCN 151 (390)
Q Consensus 79 ~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~ 151 (390)
.+...+..+++|++|+++++. +++.....+... .++|++|++++|. +++.. +......+++|++|++++|.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 455666777888888888653 555555554432 3568888888874 55543 33334457889999998888
Q ss_pred cChHHHHHHHhc----CcccceeeccCCCCCCHHH---HHHHHHcCCCCCEEeccccCccCc------ccccccCCCCCe
Q 016420 152 VTDVGLEILAST----CSTLMRVNLAYCLHISDCG---LRALSQGCSQLTAVRTSSCRTVTG------IGFNGCSPTLAY 218 (390)
Q Consensus 152 ~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~L~~ 218 (390)
+++.++..+... .++|++|++++|. +++.+ +......+++|++|+++++..... .++....++|++
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 777766665543 4588999998874 66554 333334588999999988753221 112234578999
Q ss_pred EEeeccCCChhhHHh----hhcCCCccEEEecCCccccccchhHhhh---hccCCCccEEecCCCCCCChHHHH---HHH
Q 016420 219 IDAESCQLGPEGIIG----IVSGGGLEFLNVSGMSSTLNGGGLAAIG---TGFATRLKTLNLRMCRNVGDESIV---AIA 288 (390)
Q Consensus 219 L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~---~l~ 288 (390)
|++++|.+.+.+... +..+++|++|+++++.. .+.+...+. ....++|++|++++|. +++.+.. ...
T Consensus 261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i--~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 337 (461)
T 1z7x_W 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL--GDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVL 337 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC--HHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH
T ss_pred EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC--chHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHH
Confidence 999999888875443 45588999999988742 223332222 2234689999999987 7776543 334
Q ss_pred hcCCCCceeecccccCCChhHHHHHhhc----CCCCCeEEcccccccCchHHHHHH---HcCCCCceeeccccCCcCChH
Q 016420 289 KGCPLLEEWNLSLCHEVRFPGWASVGLN----CNNLEKLHVNRCRNLCDRGLQALR---DGCKQLLILYANKKNSRVSST 361 (390)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~~~c~~l~~~ 361 (390)
..+++|+.|+++++ .+++.+...+... .++|++|++++| .+++.++..+. ..+++|+.|++++ +.+++.
T Consensus 338 ~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~--N~i~~~ 413 (461)
T 1z7x_W 338 AQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSN--NCLGDA 413 (461)
T ss_dssp HHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCS--SSCCHH
T ss_pred hhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCC--CCCCHH
Confidence 45799999999987 5777777666542 569999999998 68876655443 4589999999998 689999
Q ss_pred HHHHHHhhcC
Q 016420 362 AWELFKMYRG 371 (390)
Q Consensus 362 ~~~~l~~~~~ 371 (390)
++..+....|
T Consensus 414 ~~~~l~~~l~ 423 (461)
T 1z7x_W 414 GILQLVESVR 423 (461)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 8888876554
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=7.7e-20 Score=168.94 Aligned_cols=290 Identities=20% Similarity=0.230 Sum_probs=189.4
Q ss_pred HHHHHHhhCCCccEEEecCCCCCChhHHHHHHHcCC----CccEEEcCCCCCCChHH---HHHHHHhCCCCCeEEecccc
Q 016420 79 HVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGS----KLQTLYLDCCFQITDNG---LSVIATGCSSLTSISLYRCN 151 (390)
Q Consensus 79 ~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~ 151 (390)
.+...+..+++|++|+++++ .+.+.....+...++ +|++|++++|. +++.+ +......+++|++|++++|.
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 44556666777888888764 455555555655444 68888888765 55533 33334456778888888777
Q ss_pred cChHHHHHHHhc----CcccceeeccCCCCCCHHHH---HHHHHcCCCCCEEeccccCccCcccc-------cccCCCCC
Q 016420 152 VTDVGLEILAST----CSTLMRVNLAYCLHISDCGL---RALSQGCSQLTAVRTSSCRTVTGIGF-------NGCSPTLA 217 (390)
Q Consensus 152 ~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~L~ 217 (390)
+++.++..+... .++|++|++++|. +++.+. ......+++|++|+++++. +.+.++ ....++|+
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCC
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCce
Confidence 776666655443 3468888887764 555433 3333447888888888765 222221 12245888
Q ss_pred eEEeeccCCChhhH----HhhhcCCCccEEEecCCccccccchhHhhh---hccCCCccEEecCCCCCCChHHHHHH---
Q 016420 218 YIDAESCQLGPEGI----IGIVSGGGLEFLNVSGMSSTLNGGGLAAIG---TGFATRLKTLNLRMCRNVGDESIVAI--- 287 (390)
Q Consensus 218 ~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~l--- 287 (390)
+|++++|.+.+.+. ..+..+++|++|+++++.. .+.++..+. ...+++|++|++++|. +++.+...+
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~ 279 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL--GDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRV 279 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC--HHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC--ChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHH
Confidence 88888888777543 3345678888888887642 333333222 2247889999999987 888764433
Q ss_pred HhcCCCCceeecccccCCChhHHHHHhhc----CCCCCeEEcccccccCchHHH---HHHHcCCCCceeeccccCCcCCh
Q 016420 288 AKGCPLLEEWNLSLCHEVRFPGWASVGLN----CNNLEKLHVNRCRNLCDRGLQ---ALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~i~~~~~~---~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
...+++|+.|+++++ .+++.+...+... .++|++|++++| .+++.+.. .....+++|+.|++++ +.+++
T Consensus 280 l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~--n~i~~ 355 (461)
T 1z7x_W 280 LRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISN--NRLED 355 (461)
T ss_dssp HHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCS--SBCHH
T ss_pred HhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccC--Ccccc
Confidence 345889999999886 5777766666543 369999999998 58876544 3345689999999998 58998
Q ss_pred HHHHHHHhh----cCceeEeecc
Q 016420 361 TAWELFKMY----RGNVDIKDEE 379 (390)
Q Consensus 361 ~~~~~l~~~----~~~l~~~~~~ 379 (390)
.+...+... .+.++.-...
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECT
T ss_pred ccHHHHHHHHcCCCCceEEEECC
Confidence 888777653 3455444433
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.1e-17 Score=150.60 Aligned_cols=262 Identities=18% Similarity=0.179 Sum_probs=140.2
Q ss_pred HHHHHHhhCCCccEEEecCCCCCChhHHHHHH---HcCCCccEEEcCCCC--CCCh---HHHHHH---HHhCCCCCeEEe
Q 016420 79 HVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQ---NYGSKLQTLYLDCCF--QITD---NGLSVI---ATGCSSLTSISL 147 (390)
Q Consensus 79 ~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~--~~~~---~~~~~l---~~~~~~L~~L~l 147 (390)
.+...+..+++|++|+++++ .++......+. ..+++|++|+++++. .++. .++..+ ...+++|++|++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34445567788888888875 45665555543 356888888888763 2222 233222 345788888888
Q ss_pred cccccChHHHH---HHHhcCcccceeeccCCCCCCHHHHHHHHHc---C---------CCCCEEeccccCccCccccccc
Q 016420 148 YRCNVTDVGLE---ILASTCSTLMRVNLAYCLHISDCGLRALSQG---C---------SQLTAVRTSSCRTVTGIGFNGC 212 (390)
Q Consensus 148 ~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~---~---------~~L~~L~l~~~~~~~~~~~~~~ 212 (390)
++|.+++.+.. .....+++|++|++++|. +++.+...+... + ++|++|+++++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n----------- 169 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN----------- 169 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-----------
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-----------
Confidence 88877664333 233457888888888775 655544444332 2 55555555544
Q ss_pred CCCCCeEEeeccCCChhhHH----hhhcCCCccEEEecCCccccccchhHhh---hhccCCCccEEecCCCCCCChHHHH
Q 016420 213 SPTLAYIDAESCQLGPEGII----GIVSGGGLEFLNVSGMSSTLNGGGLAAI---GTGFATRLKTLNLRMCRNVGDESIV 285 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~ 285 (390)
.+.+.... .+..+++|++|+++++.. ...++..+ ....+++|+.|++++|. +++.+..
T Consensus 170 ------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l--~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~ 234 (386)
T 2ca6_A 170 ------------RLENGSMKEWAKTFQSHRLLHTVKMVQNGI--RPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSS 234 (386)
T ss_dssp ------------CCTGGGHHHHHHHHHHCTTCCEEECCSSCC--CHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHH
T ss_pred ------------CCCcHHHHHHHHHHHhCCCcCEEECcCCCC--CHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHH
Confidence 44322222 223344455555544421 11121111 12345666666666665 5544332
Q ss_pred HH---HhcCCCCceeecccccCCChhHHHHHhhc-----CCCCCeEEcccccccCchHHHHHH----HcCCCCceeeccc
Q 016420 286 AI---AKGCPLLEEWNLSLCHEVRFPGWASVGLN-----CNNLEKLHVNRCRNLCDRGLQALR----DGCKQLLILYANK 353 (390)
Q Consensus 286 ~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-----~~~L~~L~l~~~~~i~~~~~~~l~----~~~~~L~~L~l~~ 353 (390)
.+ ...+++|+.|+|++| .+++.+...+... +++|+.|++++| .+++.++..+. ..+++|+.|++++
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 22 234566666666665 3555544433321 566666666666 46654333222 3356666666666
Q ss_pred cCCcCChHH--HHHHHhhcCc
Q 016420 354 KNSRVSSTA--WELFKMYRGN 372 (390)
Q Consensus 354 ~c~~l~~~~--~~~l~~~~~~ 372 (390)
+.++..+ +..+....|.
T Consensus 313 --N~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 313 --NRFSEEDDVVDEIREVFST 331 (386)
T ss_dssp --SBSCTTSHHHHHHHHHHHH
T ss_pred --CcCCcchhHHHHHHHHhhh
Confidence 4455443 3444444443
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.2e-17 Score=150.54 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=112.5
Q ss_pred CCCCCeEEeeccCCChhhHHhhhc----C---------CCccEEEecCCccccccchhHhh--hhccCCCccEEecCCCC
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVS----G---------GGLEFLNVSGMSSTLNGGGLAAI--GTGFATRLKTLNLRMCR 277 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~----~---------~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~ 277 (390)
.++|++|++++|.+.+.....+.. + ++|++|+++++.. ...++..+ ....+++|++|++++|.
T Consensus 121 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~l~~~l~~~~~L~~L~L~~n~ 198 (386)
T 2ca6_A 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL--ENGSMKEWAKTFQSHRLLHTVKMVQNG 198 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC--TGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC--CcHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 356666666666665544444433 2 8999999998753 22333322 23458899999999997
Q ss_pred CCChHHHHHHHh----cCCCCceeecccccCCChhHHHHH---hhcCCCCCeEEcccccccCchHHHHHHHc-----CCC
Q 016420 278 NVGDESIVAIAK----GCPLLEEWNLSLCHEVRFPGWASV---GLNCNNLEKLHVNRCRNLCDRGLQALRDG-----CKQ 345 (390)
Q Consensus 278 ~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~-----~~~ 345 (390)
+++.++..+.. .+++|+.|+|+++. +++.+...+ ...+++|+.|++++| .+++.+...+... +++
T Consensus 199 -l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 199 -IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIG 275 (386)
T ss_dssp -CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCC
T ss_pred -CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCC
Confidence 99887655443 78999999999974 776555444 356799999999999 6988776655542 799
Q ss_pred CceeeccccCCcCChHHHHHHH----hhcCceeEeecc
Q 016420 346 LLILYANKKNSRVSSTAWELFK----MYRGNVDIKDEE 379 (390)
Q Consensus 346 L~~L~l~~~c~~l~~~~~~~l~----~~~~~l~~~~~~ 379 (390)
|+.|++++ +.++..++..+. ..+|+++.-...
T Consensus 276 L~~L~L~~--n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 276 LQTLRLQY--NEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp CCEEECCS--SCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred eEEEECcC--CcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 99999999 789887555443 345776655543
No 10
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2.8e-17 Score=145.28 Aligned_cols=160 Identities=23% Similarity=0.316 Sum_probs=118.7
Q ss_pred hCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-ccChHHHHHHHhcC
Q 016420 86 RFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NVTDVGLEILASTC 164 (390)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~ 164 (390)
.+++|++|+++++. +.+..+..+...+++|++|+++++. +++.....+.. +++|++|++++| .+++.++..+...+
T Consensus 91 ~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 91 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 57899999999864 6666677777788999999999985 77776666554 899999999999 78888888877789
Q ss_pred cccceeeccCCCCCCHHHHHHHHHcCC-CCCEEeccccC-ccCcccc---cccCCCCCeEEeeccC-CChhhHHhhhcCC
Q 016420 165 STLMRVNLAYCLHISDCGLRALSQGCS-QLTAVRTSSCR-TVTGIGF---NGCSPTLAYIDAESCQ-LGPEGIIGIVSGG 238 (390)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~~-~~~~~~~---~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~ 238 (390)
++|++|++++|..+++.++..+...+| +|++|+++++. ...+..+ ...+++|++|++++|. +.+..+..+..++
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 999999999985688887777777799 99999998875 3332222 2334667777776666 5555444444444
Q ss_pred CccEEEecCC
Q 016420 239 GLEFLNVSGM 248 (390)
Q Consensus 239 ~L~~L~l~~~ 248 (390)
+|++|+++++
T Consensus 248 ~L~~L~l~~~ 257 (336)
T 2ast_B 248 YLQHLSLSRC 257 (336)
T ss_dssp TCCEEECTTC
T ss_pred CCCEeeCCCC
Confidence 4444444444
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=5e-16 Score=137.85 Aligned_cols=241 Identities=17% Similarity=0.137 Sum_probs=163.9
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEeccc-ccChHHHHHHHh
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRC-NVTDVGLEILAS 162 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~~ 162 (390)
+..+++|++|+++++. +..- .. ...+++|++|+++++. +.+... ...+++|+.|++++| ...... . ..
T Consensus 84 ~~~l~~L~~L~L~~n~-i~~~--~~-~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~--~-~~ 152 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNK-ITDI--SA-LQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLS--P-LS 152 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCC--GG-GTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCG--G-GT
T ss_pred hhcCCcCCEEEccCCc-ccCc--hH-HcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCccccc--c-hh
Confidence 6788999999999763 3331 22 3457899999999875 333211 446899999999988 333211 1 34
Q ss_pred cCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccE
Q 016420 163 TCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEF 242 (390)
Q Consensus 163 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 242 (390)
.+++|+.|+++++....... ...+++|+.|++.++....... ....++|+.|++++|.+..... +..+++|+.
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 225 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNS 225 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred hCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCE
Confidence 58899999998875322222 3458999999998876443333 4455789999998888765443 677888999
Q ss_pred EEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCe
Q 016420 243 LNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEK 322 (390)
Q Consensus 243 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 322 (390)
|+++++....... ...+++|++|+++++. +++.. ....+++|+.|+++++. +++.. ....+++|+.
T Consensus 226 L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~ 291 (347)
T 4fmz_A 226 LKIGNNKITDLSP------LANLSQLTWLEIGTNQ-ISDIN---AVKDLTKLKMLNVGSNQ-ISDIS---VLNNLSQLNS 291 (347)
T ss_dssp EECCSSCCCCCGG------GTTCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSSC-CCCCG---GGGGCTTCSE
T ss_pred EEccCCccCCCcc------hhcCCCCCEEECCCCc-cCCCh---hHhcCCCcCEEEccCCc-cCCCh---hhcCCCCCCE
Confidence 9998875322111 2357889999998886 65531 23457889999998874 44321 2345788999
Q ss_pred EEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh
Q 016420 323 LHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 323 L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
|++++| .+++.....+. .+++|+.|++++ |. ++.
T Consensus 292 L~L~~n-~l~~~~~~~l~-~l~~L~~L~L~~-n~-l~~ 325 (347)
T 4fmz_A 292 LFLNNN-QLGNEDMEVIG-GLTNLTTLFLSQ-NH-ITD 325 (347)
T ss_dssp EECCSS-CCCGGGHHHHH-TCTTCSEEECCS-SS-CCC
T ss_pred EECcCC-cCCCcChhHhh-ccccCCEEEccC-Cc-ccc
Confidence 999888 57766555554 688899999988 54 544
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=9.5e-16 Score=136.03 Aligned_cols=253 Identities=17% Similarity=0.168 Sum_probs=177.9
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhc
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILAST 163 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 163 (390)
+..+++|++|+++++. +.+.. . ...+++|++|+++++. +.+- .. ...+++|++|++++|.+++... ...
T Consensus 62 ~~~~~~L~~L~l~~n~-i~~~~--~-~~~l~~L~~L~L~~n~-i~~~--~~-~~~l~~L~~L~l~~n~i~~~~~---~~~ 130 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQ-ITDIS--P-LSNLVKLTNLYIGTNK-ITDI--SA-LQNLTNLRELYLNEDNISDISP---LAN 130 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSC-CCCC--GG-GTTCTTCSEEECTTSCCCCCGG---GTT
T ss_pred hhhcCCccEEEccCCc-cccch--h-hhcCCcCCEEEccCCc-ccCc--hH-HcCCCcCCEEECcCCcccCchh---hcc
Confidence 4568999999998763 33221 1 4567899999999874 4432 22 4468999999999986654322 445
Q ss_pred CcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEE
Q 016420 164 CSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFL 243 (390)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 243 (390)
+++|+.|+++++....... . ...+++|+.|++.++....... ....++|++|++++|.+..... +..+++|+.|
T Consensus 131 l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 204 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204 (347)
T ss_dssp CTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred CCceeEEECCCCCCccccc--c-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCcccee
Confidence 8899999998875443321 1 3458999999999876443333 4456899999999998765433 7788899999
Q ss_pred EecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeE
Q 016420 244 NVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKL 323 (390)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (390)
++.++....... ...+++|++|++++|. +++... ...+++|+.|+++++. +++. . ....+++|+.|
T Consensus 205 ~l~~n~l~~~~~------~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~-~~~~l~~L~~L 270 (347)
T 4fmz_A 205 TAYVNQITDITP------VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDI--N-AVKDLTKLKML 270 (347)
T ss_dssp ECCSSCCCCCGG------GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC--G-GGTTCTTCCEE
T ss_pred ecccCCCCCCch------hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCc-cCCC--h-hHhcCCCcCEE
Confidence 998874322111 2458999999999997 665433 4568999999999974 4432 1 23467999999
Q ss_pred EcccccccCchHHHHHHHcCCCCceeeccccCCcCChHHHHHHHhhcCcee
Q 016420 324 HVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVD 374 (390)
Q Consensus 324 ~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~~l~~~~~~l~ 374 (390)
++++| .+++. . ....+++|+.|++++ +.++......+. .+|+++
T Consensus 271 ~l~~n-~l~~~--~-~~~~l~~L~~L~L~~--n~l~~~~~~~l~-~l~~L~ 314 (347)
T 4fmz_A 271 NVGSN-QISDI--S-VLNNLSQLNSLFLNN--NQLGNEDMEVIG-GLTNLT 314 (347)
T ss_dssp ECCSS-CCCCC--G-GGGGCTTCSEEECCS--SCCCGGGHHHHH-TCTTCS
T ss_pred EccCC-ccCCC--h-hhcCCCCCCEEECcC--CcCCCcChhHhh-ccccCC
Confidence 99998 57764 2 245789999999999 577776666664 345443
No 13
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=6.5e-16 Score=137.75 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=41.1
Q ss_pred CccEEecCCCCCCChHHHHHH----HhcCCCCceeecccccCCChhHHHH---HhhcCCCCCeEEccccc--ccCchHHH
Q 016420 267 RLKTLNLRMCRNVGDESIVAI----AKGCPLLEEWNLSLCHEVRFPGWAS---VGLNCNNLEKLHVNRCR--NLCDRGLQ 337 (390)
Q Consensus 267 ~L~~L~l~~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~--~i~~~~~~ 337 (390)
+|++|++++|. +++.+...+ ....++|+.|+++++ .+++.+... +...+++|+.|++++|. .+++.++.
T Consensus 197 ~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 197 SVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp TCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 55666665555 444332222 122345666666554 344433322 22334556666665552 24444444
Q ss_pred HHHHc---CCCCceeeccccCCcCCh
Q 016420 338 ALRDG---CKQLLILYANKKNSRVSS 360 (390)
Q Consensus 338 ~l~~~---~~~L~~L~l~~~c~~l~~ 360 (390)
.+... +++|+.|++++ +.+.+
T Consensus 275 ~l~~~~~~l~~L~~LdL~~--N~l~~ 298 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNG--KEIHP 298 (362)
T ss_dssp HHHTTSTTCCEEEEECTTS--CBCCG
T ss_pred HHHHHhccCCceEEEecCC--CcCCC
Confidence 44332 33455555555 44444
No 14
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=7.2e-16 Score=137.46 Aligned_cols=251 Identities=13% Similarity=0.049 Sum_probs=168.7
Q ss_pred HHHHHHhhCCCccEEEecCCCCCChhHHH---HHHHcCC-CccEEEcCCCCCCChHHHHH---HHHh-CCCCCeEEeccc
Q 016420 79 HVGRLLTRFQHLNWLSLSGCTELPDSGLN---QLQNYGS-KLQTLYLDCCFQITDNGLSV---IATG-CSSLTSISLYRC 150 (390)
Q Consensus 79 ~l~~~~~~~~~L~~L~l~~~~~~~~~~l~---~l~~~~~-~L~~L~l~~~~~~~~~~~~~---l~~~-~~~L~~L~l~~~ 150 (390)
.+..+....++|++|+++++. +++.... .....++ +|++|+++++. +++..... +... +++|++|++++|
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 345556666779999999764 4444332 2233456 89999999975 55543333 3333 399999999999
Q ss_pred ccChHHHH---HHHhcC-cccceeeccCCCCCCHHHHHHHH---Hc-CCCCCEEeccccCccCcc------cccccCCCC
Q 016420 151 NVTDVGLE---ILASTC-STLMRVNLAYCLHISDCGLRALS---QG-CSQLTAVRTSSCRTVTGI------GFNGCSPTL 216 (390)
Q Consensus 151 ~~~~~~~~---~l~~~~-~~L~~L~l~~~~~~~~~~l~~l~---~~-~~~L~~L~l~~~~~~~~~------~~~~~~~~L 216 (390)
.+++.+.. .....+ ++|+.|+++++. +++.+...+. .. +++|++|+++++...... .+....++|
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 77654433 333445 799999999875 6555444443 33 469999999987643211 112333599
Q ss_pred CeEEeeccCCChhhHHhh----hcC-CCccEEEecCCccccccc-hhHhhhhccCCCccEEecCCCCCCChHHH---HHH
Q 016420 217 AYIDAESCQLGPEGIIGI----VSG-GGLEFLNVSGMSSTLNGG-GLAAIGTGFATRLKTLNLRMCRNVGDESI---VAI 287 (390)
Q Consensus 217 ~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~l 287 (390)
++|++++|.+.+.....+ ... ++|+.|+++++....... .+........++|++|+++++. +++.+. ..+
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~ 248 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLL 248 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHT
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHH
Confidence 999999999877666544 344 599999999876332111 1222222225699999999997 877544 444
Q ss_pred HhcCCCCceeeccccc--CCChhHHHHHhhc---CCCCCeEEcccccccCch
Q 016420 288 AKGCPLLEEWNLSLCH--EVRFPGWASVGLN---CNNLEKLHVNRCRNLCDR 334 (390)
Q Consensus 288 ~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~---~~~L~~L~l~~~~~i~~~ 334 (390)
...+++|+.|++++|. .+++.++..+... +++|+.|+++++ .+.+.
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence 5667899999999875 4677777777644 467788899988 57655
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=3.9e-17 Score=159.82 Aligned_cols=254 Identities=19% Similarity=0.107 Sum_probs=142.3
Q ss_pred HhhCCCccEEEecCCCCCChhHHH-HHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHH--H
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLN-QLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEI--L 160 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~--l 160 (390)
+..+++|++|+++++. +...... .....+++|++|+++++. +.......+...+++|++|++++|.++...... .
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hccCCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 3455677777777542 2211111 012345777888777753 211111111134677888888777554433222 2
Q ss_pred HhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCc
Q 016420 161 ASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGL 240 (390)
Q Consensus 161 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 240 (390)
...+++|++|+++++........ ..+++|++|+++++............++|++|++++|.+.......+..+++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred hccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence 44577888888876642111111 34788888888877654433334556788999999888887777788888888
Q ss_pred cEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCC
Q 016420 241 EFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNL 320 (390)
Q Consensus 241 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 320 (390)
++|+++++........ ..+++|++|+++++. ++......+...+++|+.|+++++. ++.... .....+++|
T Consensus 250 ~~L~Ls~n~l~~~~~~------~~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p-~~~~~l~~L 320 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPP------LPLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNH-FYGAVP-PFFGSCSLL 320 (768)
T ss_dssp CEEECCSSCCEESCCC------CCCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSE-EEECCC-GGGGGCTTC
T ss_pred CEEECCCCcccCccCc------cccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCc-CCCccc-hHHhcCCCc
Confidence 9988887753211111 136677777777765 4322222223335777777777653 211111 112346677
Q ss_pred CeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 321 EKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 321 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
++|+++++ .+++..-......+++|+.|++++
T Consensus 321 ~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 321 ESLALSSN-NFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp CEEECCSS-EEEEECCHHHHTTCTTCCEEECCS
T ss_pred cEEECCCC-cccCcCCHHHHhcCCCCCEEeCcC
Confidence 77777776 343221112223567777777776
No 16
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.62 E-value=6.9e-16 Score=119.64 Aligned_cols=109 Identities=16% Similarity=0.258 Sum_probs=98.4
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhc---CCCCCeEEcccccccCchHHHHHHH
Q 016420 265 ATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLN---CNNLEKLHVNRCRNLCDRGLQALRD 341 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~~ 341 (390)
..+|++|++++|. +++.++..+ ..|++|+.|+|++|..++|.++..+... +++|++|++++|.+||+.++..+.
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred CceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence 4579999999998 999999887 4699999999999999999999999863 578999999999999999999887
Q ss_pred cCCCCceeeccccCCcCChHH--HHHHHhhcCceeEee
Q 016420 342 GCKQLLILYANKKNSRVSSTA--WELFKMYRGNVDIKD 377 (390)
Q Consensus 342 ~~~~L~~L~l~~~c~~l~~~~--~~~l~~~~~~l~~~~ 377 (390)
.|++|+.|++++ |+.+++.+ ++.+++..|+++|.-
T Consensus 137 ~~~~L~~L~L~~-c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 137 HFRNLKYLFLSD-LPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp GCTTCCEEEEES-CTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred cCCCCCEEECCC-CCCCCchHHHHHHHHHHCCCcEEEe
Confidence 699999999999 99999976 678889999998864
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.60 E-value=2.4e-16 Score=145.26 Aligned_cols=83 Identities=25% Similarity=0.209 Sum_probs=41.3
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCC
Q 016420 265 ATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCK 344 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 344 (390)
+++|+.|+++++. ++...... +..+++|+.|+++++. ++......+ ..+++|++|+++++ .++..... ....++
T Consensus 322 l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~ 395 (455)
T 3v47_A 322 LTHLLKLNLSQNF-LGSIDSRM-FENLDKLEVLDLSYNH-IRALGDQSF-LGLPNLKELALDTN-QLKSVPDG-IFDRLT 395 (455)
T ss_dssp CTTCCEEECCSSC-CCEECGGG-GTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSS-CCSCCCTT-TTTTCT
T ss_pred cccCCEEECCCCc-cCCcChhH-hcCcccCCEEECCCCc-ccccChhhc-cccccccEEECCCC-ccccCCHh-HhccCC
Confidence 4566666666654 43322111 2335666666666642 332211111 23566777777665 45432211 223566
Q ss_pred CCceeeccc
Q 016420 345 QLLILYANK 353 (390)
Q Consensus 345 ~L~~L~l~~ 353 (390)
+|+.|++++
T Consensus 396 ~L~~L~l~~ 404 (455)
T 3v47_A 396 SLQKIWLHT 404 (455)
T ss_dssp TCCEEECCS
T ss_pred cccEEEccC
Confidence 777777766
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=2e-14 Score=132.58 Aligned_cols=240 Identities=19% Similarity=0.111 Sum_probs=129.4
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHH---
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEIL--- 160 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l--- 160 (390)
+..+++|++|+++++....... ...+++|++|+++++. +.+.. . ...+++|++|++++|.+.+.. .+
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~~~--~~~~l 155 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQ-ITDID--P-LKNLTNLNRLELSSNTISDIS--ALSGL 155 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCCCG--G-GTTCTTCSEEEEEEEEECCCG--GGTTC
T ss_pred hhccccCCEEECCCCccccChh----hcCCCCCCEEECCCCC-CCCCh--H-HcCCCCCCEEECCCCccCCCh--hhccC
Confidence 5567777777777653222111 3456788888888764 33221 1 345788888888887554321 11
Q ss_pred -----------------HhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeec
Q 016420 161 -----------------ASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAES 223 (390)
Q Consensus 161 -----------------~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (390)
...+++|+.|+++++. +... .. ...+++|++|++.++....... .+..++|++|++++
T Consensus 156 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 230 (466)
T 1o6v_A 156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDI--SV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNG 230 (466)
T ss_dssp TTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCC--GG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCS
T ss_pred CcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCC--hh-hccCCCCCEEEecCCccccccc-ccccCCCCEEECCC
Confidence 1123344444444432 2111 01 1224555555555443222111 23345566666666
Q ss_pred cCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeeccccc
Q 016420 224 CQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCH 303 (390)
Q Consensus 224 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 303 (390)
|.+... ..+..+++|+.|+++++..... .. ...+++|+.|+++++. ++.... ...+++|+.|+++++.
T Consensus 231 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~----~~--~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 231 NQLKDI--GTLASLTNLTDLDLANNQISNL----AP--LSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQ 298 (466)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCC----GG--GTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC
T ss_pred CCcccc--hhhhcCCCCCEEECCCCccccc----hh--hhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCc
Confidence 654432 2445566666666666532211 11 2346777777777765 443322 3457778888887764
Q ss_pred CCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh
Q 016420 304 EVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 304 ~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
+++... ...+++|+.|++++| .+++... ...+++|+.|++++ | .++.
T Consensus 299 -l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~-n-~l~~ 345 (466)
T 1o6v_A 299 -LEDISP---ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYN-N-KVSD 345 (466)
T ss_dssp -CSCCGG---GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCS-S-CCCC
T ss_pred -ccCchh---hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCC-C-ccCC
Confidence 332111 345788888888887 4654322 34688888888888 4 5554
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.58 E-value=7.2e-14 Score=128.93 Aligned_cols=242 Identities=17% Similarity=0.108 Sum_probs=157.9
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChH-HHHH-----------------HHHhCCCCCeE
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDN-GLSV-----------------IATGCSSLTSI 145 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~-----------------l~~~~~~L~~L 145 (390)
+..+++|++|+++++. +.... . ...+++|++|+++++. +.+. .+.. -...+++|+.|
T Consensus 108 ~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L 182 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQ-ITDID--P-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 182 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCG--G-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCC-CCCCh--H-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEE
Confidence 5678899999998763 33221 1 3456889999888763 2210 0000 02346778888
Q ss_pred EecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccC
Q 016420 146 SLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQ 225 (390)
Q Consensus 146 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 225 (390)
++++|.++... . ...+++|++|+++++. +.... . ...+++|+.|++.++..... +.....++|++|++++|.
T Consensus 183 ~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 183 DISSNKVSDIS--V-LAKLTNLESLIATNNQ-ISDIT--P-LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp ECCSSCCCCCG--G-GGGCTTCSEEECCSSC-CCCCG--G-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC
T ss_pred ECcCCcCCCCh--h-hccCCCCCEEEecCCc-ccccc--c-ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCc
Confidence 88888554421 2 3457889999998775 33221 1 23488899999988764332 333456789999999888
Q ss_pred CChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCC
Q 016420 226 LGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEV 305 (390)
Q Consensus 226 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 305 (390)
+..... +..+++|+.|+++++..... .. ...+++|+.|+++++. +++... ...+++|+.|+++++. +
T Consensus 255 l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~--~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l 321 (466)
T 1o6v_A 255 ISNLAP--LSGLTKLTELKLGANQISNI----SP--LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNN-I 321 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSSCCCCC----GG--GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSC-C
T ss_pred cccchh--hhcCCCCCEEECCCCccCcc----cc--ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCc-C
Confidence 765433 67788899999988753221 11 2357889999998887 554322 3568899999998874 4
Q ss_pred ChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh
Q 016420 306 RFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 306 ~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
++... ...+++|+.|++++| .+++. .. ...+++|+.|++++ | .++.
T Consensus 322 ~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~-n-~l~~ 367 (466)
T 1o6v_A 322 SDISP---VSSLTKLQRLFFYNN-KVSDV--SS-LANLTNINWLSAGH-N-QISD 367 (466)
T ss_dssp SCCGG---GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCS-S-CCCB
T ss_pred CCchh---hccCccCCEeECCCC-ccCCc--hh-hccCCCCCEEeCCC-C-ccCc
Confidence 33221 346789999999988 56653 22 33688999999988 4 4544
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=5e-16 Score=143.95 Aligned_cols=130 Identities=15% Similarity=0.020 Sum_probs=65.4
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
++|++|++++|..............+|+.|+++++... .+.......+++|+.|+++++. ++...... +..+++
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~ 273 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT----AVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-LHELLR 273 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC----SCCHHHHTTCTTCCEEECCSSC-CCEECTTS-CTTCTT
T ss_pred cccceeeCCCCccccccCcccccCccccEEECcCCccc----ccCHHHhcCccccCeeECCCCc-CCccChhh-cccccc
Confidence 44555555554433332233333335555555554321 1111122346677777777665 44322211 234667
Q ss_pred CceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 294 LEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
|+.|+++++. ++...... ...+++|+.|+++++ .++..... ....+++|+.|++++
T Consensus 274 L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 274 LQEIQLVGGQ-LAVVEPYA-FRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSC-CSEECTTT-BTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCS
T ss_pred CCEEECCCCc-cceECHHH-hcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccC
Confidence 7777776653 33221111 234678888888877 45542221 223567888888887
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=2.6e-15 Score=138.34 Aligned_cols=106 Identities=20% Similarity=0.051 Sum_probs=50.0
Q ss_pred CCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcC
Q 016420 238 GGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNC 317 (390)
Q Consensus 238 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (390)
++|+.|+++++...... ......+++|+.|+++++. ++...... +..+++|+.|+++++. ++..... ....+
T Consensus 275 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l 346 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALL----KSVFSHFTDLEQLTLAQNE-INKIDDNA-FWGLTHLLKLNLSQNF-LGSIDSR-MFENL 346 (455)
T ss_dssp SCCCEEECCSSCCCEEC----TTTTTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSC-CCEECGG-GGTTC
T ss_pred cCceEEEecCccccccc----hhhcccCCCCCEEECCCCc-ccccChhH-hcCcccCCEEECCCCc-cCCcChh-HhcCc
Confidence 45666666654322111 1112235666666666665 44322211 2235666666666642 3221111 11235
Q ss_pred CCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 318 NNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 318 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
++|++|+++++ .++......+ ..+++|+.|++++
T Consensus 347 ~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~ 380 (455)
T 3v47_A 347 DKLEVLDLSYN-HIRALGDQSF-LGLPNLKELALDT 380 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCS
T ss_pred ccCCEEECCCC-cccccChhhc-cccccccEEECCC
Confidence 66666666665 3443322222 2466666666666
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.56 E-value=1.6e-15 Score=136.74 Aligned_cols=273 Identities=15% Similarity=0.094 Sum_probs=148.3
Q ss_pred HHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHH
Q 016420 82 RLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILA 161 (390)
Q Consensus 82 ~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~ 161 (390)
.++..+++|++|+++++. +...... ....+++|++|+++++. +..... .....+++|++|++++|.++.... .+.
T Consensus 63 ~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~-~~~ 137 (390)
T 3o6n_A 63 ALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERNDLSSLPR-GIF 137 (390)
T ss_dssp HHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTT
T ss_pred hHhcccccCcEEECCCCc-ccccChh-hccCCCCcCEEECCCCC-CCcCCH-HHhcCCCCCCEEECCCCccCcCCH-HHh
Confidence 345667777777777542 2221111 12234667777776653 222111 112335666666666664432111 112
Q ss_pred hcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc--cc------------------------------
Q 016420 162 STCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI--GF------------------------------ 209 (390)
Q Consensus 162 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~~------------------------------ 209 (390)
..+++|++|+++++. +....... ...+++|+.|+++++...... .+
T Consensus 138 ~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n 215 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNN-LERIEDDT-FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 215 (390)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTT-TSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS
T ss_pred cCCCCCcEEECCCCc-cCccChhh-ccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCC
Confidence 235566666665543 22111111 123555666655554321100 00
Q ss_pred ------cccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHH
Q 016420 210 ------NGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDES 283 (390)
Q Consensus 210 ------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 283 (390)
....++|+.|++++|.+... ..+..+++|+.|+++++..... .......+++|+.|+++++. ++...
T Consensus 216 ~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~-l~~~~ 288 (390)
T 3o6n_A 216 SINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNR-LVALN 288 (390)
T ss_dssp CCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSCCEEECCSSC-CCEEE
T ss_pred eeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc----ChhHccccccCCEEECCCCc-CcccC
Confidence 01123566666666665543 3566777888888877643211 11122347888888888876 55422
Q ss_pred HHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCChHHH
Q 016420 284 IVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAW 363 (390)
Q Consensus 284 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~ 363 (390)
.....+++|+.|+++++. ++.... . ...+++|+.|+++++ .++... ...+++|+.|++++ +.++.+..
T Consensus 289 --~~~~~l~~L~~L~L~~n~-l~~~~~-~-~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~--N~~~~~~~ 356 (390)
T 3o6n_A 289 --LYGQPIPTLKVLDLSHNH-LLHVER-N-QPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSH--NDWDCNSL 356 (390)
T ss_dssp --CSSSCCTTCCEEECCSSC-CCCCGG-G-HHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCS--SCEEHHHH
T ss_pred --cccCCCCCCCEEECCCCc-ceecCc-c-ccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCC--CCccchhH
Confidence 112457889999998874 332110 1 123578999999988 466543 34688999999999 78888888
Q ss_pred HHHHhhcCceeEeecce
Q 016420 364 ELFKMYRGNVDIKDEEV 380 (390)
Q Consensus 364 ~~l~~~~~~l~~~~~~~ 380 (390)
..+....+...+.....
T Consensus 357 ~~~~~~~~~~~~~~~~~ 373 (390)
T 3o6n_A 357 RALFRNVARPAVDDADQ 373 (390)
T ss_dssp HHHTTTCCTTTBCCCCS
T ss_pred HHHHHHHHhhcccccCc
Confidence 88776666555444433
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.54 E-value=8e-16 Score=142.57 Aligned_cols=258 Identities=15% Similarity=0.080 Sum_probs=152.2
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhc
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILAST 163 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 163 (390)
+..+++|++|+++++ .+.... ......+++|++|+++++. +..... ..+..+++|++|++++|.+.......+ ..
T Consensus 52 ~~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~ 126 (477)
T 2id5_A 52 FASFPHLEELELNEN-IVSAVE-PGAFNNLFNLRTLGLRSNR-LKLIPL-GVFTGLSNLTKLDISENKIVILLDYMF-QD 126 (477)
T ss_dssp TTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCSCCT-TSSTTCTTCCEEECTTSCCCEECTTTT-TT
T ss_pred ccCCCCCCEEECCCC-ccCEeC-hhhhhCCccCCEEECCCCc-CCccCc-ccccCCCCCCEEECCCCccccCChhHc-cc
Confidence 455677888887754 232211 1112345778888887753 322111 112346778888887775543211122 34
Q ss_pred CcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc-cccccCCCCCeEEeeccCCChhhHHhhhcCCCccE
Q 016420 164 CSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEF 242 (390)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 242 (390)
+++|++|+++++. +.......+ ..+++|+.|++.++...... ......++|+.|++++|.+.......+..+++|+.
T Consensus 127 l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 204 (477)
T 2id5_A 127 LYNLKSLEVGDND-LVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204 (477)
T ss_dssp CTTCCEEEECCTT-CCEECTTSS-TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred cccCCEEECCCCc-cceeChhhc-cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence 6778888887653 322111112 24777888888776432221 12334567888888887776655556677778888
Q ss_pred EEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCe
Q 016420 243 LNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEK 322 (390)
Q Consensus 243 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 322 (390)
|+++++........ ......+|+.|+++++. ++..... .+..+++|+.|+++++. ++...... ...+++|+.
T Consensus 205 L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~ 276 (477)
T 2id5_A 205 LEISHWPYLDTMTP----NCLYGLNLTSLSITHCN-LTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEGSM-LHELLRLQE 276 (477)
T ss_dssp EEEECCTTCCEECT----TTTTTCCCSEEEEESSC-CCSCCHH-HHTTCTTCCEEECCSSC-CCEECTTS-CTTCTTCCE
T ss_pred eeCCCCccccccCc----ccccCccccEEECcCCc-ccccCHH-HhcCccccCeeECCCCc-CCccChhh-ccccccCCE
Confidence 88877543211100 01124489999999886 6654333 34568999999999864 44322211 235789999
Q ss_pred EEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh
Q 016420 323 LHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 323 L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
|+++++ .++......+ ..+++|+.|++++ +.++.
T Consensus 277 L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~--N~l~~ 310 (477)
T 2id5_A 277 IQLVGG-QLAVVEPYAF-RGLNYLRVLNVSG--NQLTT 310 (477)
T ss_dssp EECCSS-CCSEECTTTB-TTCTTCCEEECCS--SCCSC
T ss_pred EECCCC-ccceECHHHh-cCcccCCEEECCC--CcCce
Confidence 999988 5665433333 3689999999998 55553
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=5.2e-15 Score=127.43 Aligned_cols=203 Identities=17% Similarity=0.108 Sum_probs=94.0
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQL 193 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 193 (390)
++|++|+++++. ++..... ....+++|++|+++++.++......+ ..+++|++|+++++..+....... ...+++|
T Consensus 32 ~~l~~L~l~~n~-i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNR-ISHVPAA-SFRACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPAT-FHGLGRL 107 (285)
T ss_dssp TTCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTT-TTTCTTC
T ss_pred CCceEEEeeCCc-CCccCHH-HcccCCCCCEEECCCCccceeCHhhc-CCccCCCEEeCCCCCCccccCHHH-hcCCcCC
Confidence 566666666643 3321111 12335666666666654432211112 224555666555543122111011 1124445
Q ss_pred CEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEec
Q 016420 194 TAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNL 273 (390)
Q Consensus 194 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 273 (390)
++|++ ++|.+.......+..+++|++|+++++.....+. -....+++|++|++
T Consensus 108 ~~L~l-----------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 108 HTLHL-----------------------DRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFL 160 (285)
T ss_dssp CEEEC-----------------------TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEEC
T ss_pred CEEEC-----------------------CCCcCCEECHhHhhCCcCCCEEECCCCcccccCH----hHhccCCCccEEEC
Confidence 55554 4444443333334444455555554442211110 01123556666666
Q ss_pred CCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 274 RMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
+++. ++...... +..+++|+.|+++++. ++......+ ..+++|+.|+++++ .+++.....+ ..+++|+.|++++
T Consensus 161 ~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 161 HGNR-ISSVPERA-FRGLHSLDRLLLHQNR-VAHVHPHAF-RDLGRLMTLYLFAN-NLSALPTEAL-APLRALQYLRLND 234 (285)
T ss_dssp CSSC-CCEECTTT-TTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSS-CCSCCCHHHH-TTCTTCCEEECCS
T ss_pred CCCc-ccccCHHH-hcCccccCEEECCCCc-ccccCHhHc-cCcccccEeeCCCC-cCCcCCHHHc-ccCcccCEEeccC
Confidence 6654 44322111 2235667777776653 332211111 24577888888777 5665433333 3677888888877
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.53 E-value=3.7e-15 Score=142.40 Aligned_cols=211 Identities=15% Similarity=0.084 Sum_probs=110.6
Q ss_pred CcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc--ccccccCCCCCeEEeeccCCChhhHHhhhcCCCcc
Q 016420 164 CSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG--IGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLE 241 (390)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 241 (390)
+++|+.|+++++. +....... ...+++|+.|++.++..... .......++|++|++++|.+.......+..+++|+
T Consensus 375 l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 375 LSHLQSLNLSYNE-PLSLKTEA-FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp CTTCCEEECCSCS-CEEECTTT-TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCc-CCcCCHHH-hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 4555555555443 21111111 12356666666665543221 11123446777777777776655555566677778
Q ss_pred EEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCC
Q 016420 242 FLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLE 321 (390)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (390)
+|+++++...... .........+++|+.|++++|. ++...... +..+++|+.|+++++ .++......+ ..+++|
T Consensus 453 ~L~L~~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~L- 526 (606)
T 3t6q_A 453 HLNLQGNHFPKGN-IQKTNSLQTLGRLEILVLSFCD-LSSIDQHA-FTSLKMMNHVDLSHN-RLTSSSIEAL-SHLKGI- 526 (606)
T ss_dssp EEECTTCBCGGGE-ECSSCGGGGCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCCGGGGGGG-TTCCSC-
T ss_pred EEECCCCCCCccc-cccchhhccCCCccEEECCCCc-cCccChhh-hccccCCCEEECCCC-ccCcCChhHh-Cccccc-
Confidence 8877776432100 0000112347788888888876 55432222 234778888888876 3554433333 246777
Q ss_pred eEEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh----HHHHHHHhhcCceeEeecceeeeCCc
Q 016420 322 KLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS----TAWELFKMYRGNVDIKDEEVMCIGPD 386 (390)
Q Consensus 322 ~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~----~~~~~l~~~~~~l~~~~~~~~~~~~~ 386 (390)
.|+++++ .++...... ...+++|+.|++++ |+-.-+ ..++.+......+. ....+.|-+|.
T Consensus 527 ~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~-N~~~c~c~~~~~~~w~~~~~~~~~-~~~~~~C~~p~ 591 (606)
T 3t6q_A 527 YLNLASN-HISIILPSL-LPILSQQRTINLRQ-NPLDCTCSNIYFLEWYKENMQKLE-DTEDTLCENPP 591 (606)
T ss_dssp EEECCSS-CCCCCCGGG-HHHHHTSSEEECTT-CCEECSGGGHHHHHHHHHCGGGEE-CGGGCBEEESG
T ss_pred EEECcCC-cccccCHhh-cccCCCCCEEeCCC-CCccccCCcHHHHHHHHhCccccc-CCCCCeeCCch
Confidence 8888877 465432222 22467889999988 543222 22334433322322 22345566665
No 26
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.52 E-value=1e-15 Score=133.81 Aligned_cols=247 Identities=15% Similarity=0.090 Sum_probs=150.8
Q ss_pred hhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHH
Q 016420 77 SFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVG 156 (390)
Q Consensus 77 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 156 (390)
...+..++..+++|++|+++++ .+....... ...+++|++|+++++. ++... . ...+++|++|++++|.++...
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNYVQELL 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSSEEEEEE
T ss_pred hhhHHHHhccCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCCcccccc
Confidence 3445566667788888888865 333322222 3456888888888865 33211 1 345788888888888655311
Q ss_pred HHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCccc-ccccCCCCCeEEeeccCCChhhHHhhh
Q 016420 157 LEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIG-FNGCSPTLAYIDAESCQLGPEGIIGIV 235 (390)
Q Consensus 157 ~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~ 235 (390)
..++|+.|+++++. ++.... ..+++|+.|+++++....... .....++|++|++++|.+.......+.
T Consensus 97 ------~~~~L~~L~l~~n~-l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 97 ------VGPSIETLHAANNN-ISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp ------ECTTCCEEECCSSC-CSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred ------CCCCcCEEECCCCc-cCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 24788888887764 433211 136778888888765433221 234457788888888887766555553
Q ss_pred -cCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHh
Q 016420 236 -SGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVG 314 (390)
Q Consensus 236 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (390)
.+++|++|+++++..... . ....+++|+.|+++++. ++..... ...+++|+.|+++++. ++. +....
T Consensus 166 ~~l~~L~~L~L~~N~l~~~----~--~~~~l~~L~~L~Ls~N~-l~~l~~~--~~~l~~L~~L~L~~N~-l~~--l~~~~ 233 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV----K--GQVVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNNK-LVL--IEKAL 233 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE----E--CCCCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTSC-CCE--ECTTC
T ss_pred hccCcCCEEECCCCcCccc----c--cccccccCCEEECCCCc-CCcchhh--hcccCcccEEECcCCc-ccc--hhhHh
Confidence 567888888877643211 1 11136788888888876 5543211 3346788888887763 332 11112
Q ss_pred hcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 315 LNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 315 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
..+++|+.|+++++ .++...+......+++|+.+++.+
T Consensus 234 ~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 234 RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCC
Confidence 34678888888877 466445555555677777776664
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=3.4e-15 Score=142.01 Aligned_cols=267 Identities=15% Similarity=0.089 Sum_probs=148.0
Q ss_pred HHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHH
Q 016420 81 GRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEIL 160 (390)
Q Consensus 81 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l 160 (390)
..++..+++|+.|+++++. +...... ....+++|++|+++++. ++.... ..+..+++|+.|++++|.++.... .+
T Consensus 68 ~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~-~~ 142 (597)
T 3oja_B 68 AALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERNDLSSLPR-GI 142 (597)
T ss_dssp THHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TT
T ss_pred HHHHccCCCCcEEECCCCC-CCCCChH-HhcCCCCCCEEECCCCc-CCCCCH-HHHcCCCCCCEEEeeCCCCCCCCH-HH
Confidence 3455677888888887653 3321111 12345677777777754 332111 112346777777777775442111 11
Q ss_pred HhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc--cc-----------------------------
Q 016420 161 ASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI--GF----------------------------- 209 (390)
Q Consensus 161 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~~----------------------------- 209 (390)
...+++|+.|+++++. +.......+ ..+++|+.|+++++...... .+
T Consensus 143 ~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred hccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence 2336667777776653 222111111 23566666666654321100 00
Q ss_pred -------cccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChH
Q 016420 210 -------NGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDE 282 (390)
Q Consensus 210 -------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 282 (390)
....++|+.|++++|.+.. +..+..+++|+.|+++++..... .+.....+++|+.|+++++. ++..
T Consensus 221 n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~-l~~l 293 (597)
T 3oja_B 221 NSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNR-LVAL 293 (597)
T ss_dssp SCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSCCEEECTTSC-CCEE
T ss_pred CcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC----CHHHhcCccCCCEEECCCCC-CCCC
Confidence 0112356666666666554 24566777888888877643211 11122357888888888876 5542
Q ss_pred HHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCChHH
Q 016420 283 SIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTA 362 (390)
Q Consensus 283 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~ 362 (390)
. .....+|+|+.|+|+++. ++.. ..-...+++|+.|++++| .++... ...+++|+.|++++ +.++.+.
T Consensus 294 ~--~~~~~l~~L~~L~Ls~N~-l~~i--~~~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~--N~~~~~~ 361 (597)
T 3oja_B 294 N--LYGQPIPTLKVLDLSHNH-LLHV--ERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSH--NDWDCNS 361 (597)
T ss_dssp E--CSSSCCTTCCEEECCSSC-CCCC--GGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCS--SCEEHHH
T ss_pred C--cccccCCCCcEEECCCCC-CCcc--CcccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeC--CCCCChh
Confidence 1 122447888999888864 3311 111134678999999988 465443 34678999999998 6777777
Q ss_pred HHHHHhhcCce
Q 016420 363 WELFKMYRGNV 373 (390)
Q Consensus 363 ~~~l~~~~~~l 373 (390)
...+....+..
T Consensus 362 ~~~~~~~~~~~ 372 (597)
T 3oja_B 362 LRALFRNVARP 372 (597)
T ss_dssp HHHHTTTCCTT
T ss_pred HHHHHHHHhhh
Confidence 76665544443
No 28
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=8.4e-13 Score=117.38 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=42.7
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHh----CCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHH
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATG----CSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQ 188 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 188 (390)
++|++|++++|. +++.....+... +++|++|+|++|.+++.++..+...+++|++|++++|. +++.+...+..
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence 556666666654 555444443332 24666677766666666666665555666677776653 66655555443
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.51 E-value=3.3e-14 Score=126.32 Aligned_cols=257 Identities=16% Similarity=0.071 Sum_probs=171.3
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
++|++|+++++. ++..... ....+++|++|+++++. ++..... ....+++|++|++++|.++...... ...+++|
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNS-DLQRCVNLQALVLTSNG-INTIEED-SFSSLGSLEHLDLSYNYLSNLSSSW-FKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCSSCCHHH-HTTCTTC
T ss_pred ccCcEEECCCCc-CcccCHH-HhccCCCCCEEECCCCc-cCccCHh-hcCCCCCCCEEECCCCcCCcCCHhH-hCCCccC
Confidence 589999999753 3331111 12456899999999874 4432211 2345799999999999766433322 3458999
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc--cccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEe
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI--GFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNV 245 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 245 (390)
++|+++++. +...........+++|+.|+++++...... ......++|++|++++|.+.......+..+++|++|++
T Consensus 127 ~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 127 TFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp SEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 999998874 332111012335899999999987533332 22344578999999999988777777888899999999
Q ss_pred cCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHH--HHhcCCCCceeecccccCCChhHHHHH---hhcCCCC
Q 016420 246 SGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVA--IAKGCPLLEEWNLSLCHEVRFPGWASV---GLNCNNL 320 (390)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L 320 (390)
+++.. ..+.......+++|+.|+++++. ++...... .....+.++.+.+.++ .+++..+..+ ...+++|
T Consensus 206 ~~n~l----~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 206 HMKQH----ILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp ECSCS----TTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTC
T ss_pred CCCcc----ccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCC
Confidence 88753 22222223347899999999987 65432211 2234677899999886 4777655544 3568999
Q ss_pred CeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh
Q 016420 321 EKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 321 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
+.|+++++ .++... ..+...+++|+.|++++ + .++.
T Consensus 280 ~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~-N-~~~~ 315 (353)
T 2z80_A 280 LELEFSRN-QLKSVP-DGIFDRLTSLQKIWLHT-N-PWDC 315 (353)
T ss_dssp CEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-S-CBCC
T ss_pred CEEECCCC-CCCccC-HHHHhcCCCCCEEEeeC-C-CccC
Confidence 99999998 576321 12234789999999999 4 4443
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=2e-15 Score=131.49 Aligned_cols=185 Identities=16% Similarity=0.041 Sum_probs=99.9
Q ss_pred CCCCCEEeccccCccCcc--cccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCcccc--ccchhHhhhhccC
Q 016420 190 CSQLTAVRTSSCRTVTGI--GFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTL--NGGGLAAIGTGFA 265 (390)
Q Consensus 190 ~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~ 265 (390)
+++|++|++.++...... ......++|++|++++|.+.......+..+++|+.|+++++.... .+. ....+
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~~l 174 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-----IFTEL 174 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-----CCTTC
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-----HHhhC
Confidence 555555555554322211 122334566666666666554444445566677777776653221 111 12246
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcC-C
Q 016420 266 TRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGC-K 344 (390)
Q Consensus 266 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~ 344 (390)
++|+.|+++++. ++...... ...+++|+.|+++++. ++...... ...+++|+.|+++++ .++......+. .+ +
T Consensus 175 ~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~~ 248 (306)
T 2z66_A 175 RNLTFLDLSQCQ-LEQLSPTA-FNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPS 248 (306)
T ss_dssp TTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTS-CCCBCSSSSCC-CCCT
T ss_pred cCCCEEECCCCC-cCCcCHHH-hcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCC-CCcccCHHHHH-hhhc
Confidence 778888888776 55432222 2347788888888764 33221111 234688899999887 56554333333 45 4
Q ss_pred CCceeeccccCCcCCh-H---H-HHHHHhhcCceeEeecceeeeCCccc
Q 016420 345 QLLILYANKKNSRVSS-T---A-WELFKMYRGNVDIKDEEVMCIGPDWI 388 (390)
Q Consensus 345 ~L~~L~l~~~c~~l~~-~---~-~~~l~~~~~~l~~~~~~~~~~~~~~~ 388 (390)
+|+.|++++ +.++. . . .+.+ .....+.+....+.+..|++.
T Consensus 249 ~L~~L~L~~--N~~~~~c~~~~~~~~l-~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 249 SLAFLNLTQ--NDFACTCEHQSFLQWI-KDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp TCCEEECTT--CCEECSGGGHHHHHHH-HHTGGGBSCGGGCBEEESGGG
T ss_pred cCCEEEccC--CCeecccChHHHHHHH-HhhhhhhccccccccCCchhh
Confidence 899999988 44432 1 1 2333 333444444556667777644
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.50 E-value=3.5e-14 Score=133.98 Aligned_cols=160 Identities=12% Similarity=0.005 Sum_probs=71.4
Q ss_pred hhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcC
Q 016420 85 TRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTC 164 (390)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 164 (390)
..+++|++|+++++. +..... .....+++|++|+++++. +...... ....+++|++|++++|.++..........+
T Consensus 47 ~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 47 RACANLQVLILKSSR-INTIEG-DAFYSLGSLEHLDLSDNH-LSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CCSCCHH-HHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hcCCcccEEECCCCC-cCccCh-hhccccccCCEEECCCCc-cCccCHH-HhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 345566666665432 221110 111234556666666543 2221111 123356666666666544321111122335
Q ss_pred cccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEE
Q 016420 165 STLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFL 243 (390)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 243 (390)
++|++|+++++..++......+ ..+++|++|++.++..... .......++|++|+++.+.........+..+++|+.|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEE
T ss_pred CCccEEECCCCccccccCHhhh-hcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEE
Confidence 5666666655432221110111 2355566666655442211 1112223456666666665443332233456788888
Q ss_pred EecCCc
Q 016420 244 NVSGMS 249 (390)
Q Consensus 244 ~l~~~~ 249 (390)
+++++.
T Consensus 202 ~L~~n~ 207 (549)
T 2z81_A 202 ELRDTN 207 (549)
T ss_dssp EEESCB
T ss_pred EccCCc
Confidence 887654
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.50 E-value=3.1e-16 Score=136.85 Aligned_cols=252 Identities=15% Similarity=0.080 Sum_probs=153.8
Q ss_pred CCccEEEecCCCCCCh-hHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcc
Q 016420 88 QHLNWLSLSGCTELPD-SGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCST 166 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 166 (390)
.++++|+++++. +.. ..+......+++|++|+++++..+....... ...+++|++|++++|.++......+ ..+++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFL-SQIKT 126 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGG-GGCTT
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHH-hCCCC
Confidence 578889988753 332 0111223346899999998422233221112 3458899999999886653222223 34789
Q ss_pred cceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccC--cccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEE
Q 016420 167 LMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVT--GIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLN 244 (390)
Q Consensus 167 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 244 (390)
|++|+++++. +....... ...+++|++|+++++.... ...+....++|++|++++|.+.......+.... |+.|+
T Consensus 127 L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 127 LVTLDFSYNA-LSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp CCEEECCSSE-EESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCEEeCCCCc-cCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 9999998764 32111112 2348899999998876431 223344445899999999887766566666665 99999
Q ss_pred ecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEE
Q 016420 245 VSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLH 324 (390)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 324 (390)
++++...... ......+++|+.|+++++. ++..... ...+++|+.|+++++. ++..... ....+++|+.|+
T Consensus 204 Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~-l~~~~~~--~~~l~~L~~L~Ls~N~-l~~~~p~-~l~~l~~L~~L~ 274 (313)
T 1ogq_A 204 LSRNMLEGDA----SVLFGSDKNTQKIHLAKNS-LAFDLGK--VGLSKNLNGLDLRNNR-IYGTLPQ-GLTQLKFLHSLN 274 (313)
T ss_dssp CCSSEEEECC----GGGCCTTSCCSEEECCSSE-ECCBGGG--CCCCTTCCEEECCSSC-CEECCCG-GGGGCTTCCEEE
T ss_pred CcCCcccCcC----CHHHhcCCCCCEEECCCCc-eeeecCc--ccccCCCCEEECcCCc-ccCcCCh-HHhcCcCCCEEE
Confidence 9887532211 1123457889999998886 5432111 3457889999998864 3322111 123578899999
Q ss_pred cccccccCchHHHHHHHcCCCCceeeccccCCcC
Q 016420 325 VNRCRNLCDRGLQALRDGCKQLLILYANKKNSRV 358 (390)
Q Consensus 325 l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l 358 (390)
++++ .+++. +... ..+++|+.+++.+ ++.+
T Consensus 275 Ls~N-~l~~~-ip~~-~~l~~L~~l~l~~-N~~l 304 (313)
T 1ogq_A 275 VSFN-NLCGE-IPQG-GNLQRFDVSAYAN-NKCL 304 (313)
T ss_dssp CCSS-EEEEE-CCCS-TTGGGSCGGGTCS-SSEE
T ss_pred CcCC-ccccc-CCCC-ccccccChHHhcC-CCCc
Confidence 9987 45532 1122 3577888888887 5533
No 33
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=1.2e-14 Score=127.10 Aligned_cols=237 Identities=11% Similarity=0.016 Sum_probs=161.6
Q ss_pred HHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHH
Q 016420 106 LNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRA 185 (390)
Q Consensus 106 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~ 185 (390)
+..+...+++|++|+++++. ++..... ....+++|+.|++++|.++... . ...+++|+.|+++++. ++...
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~--- 96 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNP-LSQISAA-DLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--- 96 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSC-CCCCCHH-HHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE---
T ss_pred HHHHhccCCCCCEEECcCCc-cCcCCHH-HhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc---
Confidence 34455566899999999975 5443222 3456899999999999664322 1 4458999999998875 43211
Q ss_pred HHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccC
Q 016420 186 LSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFA 265 (390)
Q Consensus 186 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 265 (390)
..++|+.|+++++..... . ....++|++|++++|.+.......+..+++|+.|+++++...... ...+ ...+
T Consensus 97 ---~~~~L~~L~l~~n~l~~~-~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~-~~~l 168 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRV-S-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAEL-AASS 168 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEE-E-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE--GGGG-GGGT
T ss_pred ---CCCCcCEEECCCCccCCc-C-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc--HHHH-hhcc
Confidence 368999999998763322 1 123578999999999988876667788899999999987543211 1111 1247
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCC
Q 016420 266 TRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQ 345 (390)
Q Consensus 266 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 345 (390)
++|++|+++++. ++... .. ..+++|+.|+++++. ++..... ...+++|+.|+++++ .++. +......+++
T Consensus 169 ~~L~~L~L~~N~-l~~~~--~~-~~l~~L~~L~Ls~N~-l~~l~~~--~~~l~~L~~L~L~~N-~l~~--l~~~~~~l~~ 238 (317)
T 3o53_A 169 DTLEHLNLQYNF-IYDVK--GQ-VVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNN-KLVL--IEKALRFSQN 238 (317)
T ss_dssp TTCCEEECTTSC-CCEEE--CC-CCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTS-CCCE--ECTTCCCCTT
T ss_pred CcCCEEECCCCc-Ccccc--cc-cccccCCEEECCCCc-CCcchhh--hcccCcccEEECcCC-cccc--hhhHhhcCCC
Confidence 899999999997 65431 11 137899999999874 4432111 335789999999998 5764 2333446899
Q ss_pred CceeeccccCCcCChHHHHHHHhhcC
Q 016420 346 LLILYANKKNSRVSSTAWELFKMYRG 371 (390)
Q Consensus 346 L~~L~l~~~c~~l~~~~~~~l~~~~~ 371 (390)
|+.|++++ +.++...+..+....+
T Consensus 239 L~~L~l~~--N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 239 LEHFDLRG--NGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp CCEEECTT--CCCBHHHHHHHHHTCH
T ss_pred CCEEEccC--CCccCcCHHHHHhccc
Confidence 99999999 6677444443333333
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=1.4e-14 Score=141.52 Aligned_cols=206 Identities=10% Similarity=-0.015 Sum_probs=114.9
Q ss_pred hCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCCh-HHHHHHH------HhCCCCCeEEecccccChHHHH
Q 016420 86 RFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITD-NGLSVIA------TGCSSLTSISLYRCNVTDVGLE 158 (390)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~------~~~~~L~~L~l~~~~~~~~~~~ 158 (390)
.+++|++|+++++..... ++.....+++|++|+++++..++. .....+. ..+++|+.|++++|.++. +.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~--ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE--FP 564 (876)
T ss_dssp GCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--CC
T ss_pred cCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--cC
Confidence 788999999987643221 122234568999999998754565 2222222 235699999999986662 22
Q ss_pred H--HHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCC-CCeEEeeccCCChhhHHhhh
Q 016420 159 I--LASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPT-LAYIDAESCQLGPEGIIGIV 235 (390)
Q Consensus 159 ~--l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~ 235 (390)
. ....+++|+.|+++++. +. .+. ....+++|+.|+++++....-.......++ |+.|++++|.+. ..+..+.
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~-l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNK-VR--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSC-CC--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred ChhhhhcCCCCCEEECCCCC-cc--cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 2 33458899999998765 44 222 223478888888888764422222223345 888888888765 2222222
Q ss_pred cC--CCccEEEecCCccccccchhH-hhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccc
Q 016420 236 SG--GGLEFLNVSGMSSTLNGGGLA-AIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLC 302 (390)
Q Consensus 236 ~~--~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 302 (390)
.. ++|+.|+++++........+. .+.....++|+.|+++++. ++... ..+...+++|+.|+|+++
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp-~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFP-TELFATGSPISTIILSNN 707 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCC-HHHHHTTCCCSEEECCSC
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccC-HHHHccCCCCCEEECCCC
Confidence 22 347777776654321111110 0001123356666666655 44211 223334556666666554
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.49 E-value=3e-15 Score=143.00 Aligned_cols=281 Identities=16% Similarity=0.097 Sum_probs=131.3
Q ss_pred hhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcC
Q 016420 85 TRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTC 164 (390)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 164 (390)
..+++|++|+++++. ++. ++.....+++|++|+++++. +..... .....+++|++|++++|.+...........+
T Consensus 275 ~~l~~L~~L~l~~n~-l~~--lp~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 275 HCFSGLQELDLTATH-LSE--LPSGLVGLSTLKKLVLSANK-FENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTCTTCSEEECTTSC-CSC--CCSSCCSCTTCCEEECTTCC-CSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred ccccCCCEEeccCCc-cCC--CChhhcccccCCEEECccCC-cCcCch-hhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 345556666665432 211 11111234566666666543 222111 1122356666666666533211111112235
Q ss_pred cccceeeccCCCCCCHHH-HHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCeEEeeccCCChhhHH-hhhcCCCcc
Q 016420 165 STLMRVNLAYCLHISDCG-LRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQLGPEGII-GIVSGGGLE 241 (390)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~ 241 (390)
++|+.|+++++. +.... .......+++|+.|++.++..... .......++|++|++++|.+...... .+..+++|+
T Consensus 350 ~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 350 ENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp TTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 666666665543 22211 001112356666666665542211 11122345666666666654433222 245566677
Q ss_pred EEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHH--HHHhcCCCCceeecccccCCChhHHHHHhhcCCC
Q 016420 242 FLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIV--AIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNN 319 (390)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 319 (390)
.|+++++....... .....+++|+.|+++++. +++..+. .....+++|+.|++++|. ++......+ ..+++
T Consensus 429 ~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~ 501 (606)
T 3t6q_A 429 VLNLSHSLLDISSE----QLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAF-TSLKM 501 (606)
T ss_dssp EEECTTCCCBTTCT----TTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTT-TTCTT
T ss_pred EEECCCCccCCcCH----HHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhh-ccccC
Confidence 77766654221111 112246677777777765 4432111 123446777777777753 332211111 24677
Q ss_pred CCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh---HHHHHHHhhcCceeEeecceeeeC
Q 016420 320 LEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS---TAWELFKMYRGNVDIKDEEVMCIG 384 (390)
Q Consensus 320 L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~---~~~~~l~~~~~~l~~~~~~~~~~~ 384 (390)
|+.|+++++ .++......+. .++.| .|++++ +.++. +.+..+ .....+.+......+-.
T Consensus 502 L~~L~Ls~N-~l~~~~~~~l~-~l~~L-~L~L~~--N~l~~~~~~~~~~l-~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 502 MNHVDLSHN-RLTSSSIEALS-HLKGI-YLNLAS--NHISIILPSLLPIL-SQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCEEECCSS-CCCGGGGGGGT-TCCSC-EEECCS--SCCCCCCGGGHHHH-HTSSEEECTTCCEECSG
T ss_pred CCEEECCCC-ccCcCChhHhC-ccccc-EEECcC--CcccccCHhhcccC-CCCCEEeCCCCCccccC
Confidence 777777776 56654433333 56777 777777 44442 233333 12234455455444433
No 36
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=9.7e-16 Score=149.99 Aligned_cols=130 Identities=16% Similarity=0.017 Sum_probs=68.6
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
++|++|++++|.+....+..+..+++|+.|+++++...... +.....+++|+.|+++++. +....... ...+++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~n~-l~~~~p~~-~~~l~~ 467 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI----PSSLGSLSKLRDLKLWLNM-LEGEIPQE-LMYVKT 467 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC----CGGGGGCTTCCEEECCSSC-CCSCCCGG-GGGCTT
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc----cHHHhcCCCCCEEECCCCc-ccCcCCHH-HcCCCC
Confidence 34555555555544444445555666666666655322111 0112246677777777665 44322112 234677
Q ss_pred CceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 294 LEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
|+.|+++++. ++..... ....+++|+.|++++| .+++.. ......+++|+.|++++
T Consensus 468 L~~L~L~~N~-l~~~~p~-~l~~l~~L~~L~L~~N-~l~~~~-p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 468 LETLILDFND-LTGEIPS-GLSNCTNLNWISLSNN-RLTGEI-PKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCEEECCSSC-CCSCCCG-GGGGCTTCCEEECCSS-CCCSCC-CGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCc-ccCcCCH-HHhcCCCCCEEEccCC-ccCCcC-ChHHhcCCCCCEEECCC
Confidence 7777777753 2221111 1234677888888777 454321 22233577888888877
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.49 E-value=7.2e-15 Score=128.92 Aligned_cols=129 Identities=20% Similarity=0.167 Sum_probs=78.5
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCC
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCP 292 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 292 (390)
.++|++|++++|.+. ..+..+..+++|+.|+++++.....+.. ...+++|+.|++++|. +..... .....++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~-----l~~l~~L~~L~Ls~n~-~~~~~p-~~~~~l~ 253 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA-----IHHLPKLEELDLRGCT-ALRNYP-PIFGGRA 253 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGG-----GGGCTTCCEEECTTCT-TCCBCC-CCTTCCC
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchh-----hccCCCCCEEECcCCc-chhhhH-HHhcCCC
Confidence 567888888877766 3344567777888888877654322221 2347788888888876 322111 1234577
Q ss_pred CCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 293 LLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
+|+.|++++|....... .. ...+++|+.|++++|...+. +......+++|+.+.+..
T Consensus 254 ~L~~L~L~~n~~~~~~p-~~-~~~l~~L~~L~L~~n~~~~~--iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLP-LD-IHRLTQLEKLDLRGCVNLSR--LPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCEEECTTCTTCCBCC-TT-GGGCTTCCEEECTTCTTCCC--CCGGGGGSCTTCEEECCG
T ss_pred CCCEEECCCCCchhhcc-hh-hhcCCCCCEEeCCCCCchhh--ccHHHhhccCceEEeCCH
Confidence 88888888765333211 11 23578888888888743332 223334678888888766
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.48 E-value=3.9e-15 Score=142.24 Aligned_cols=204 Identities=16% Similarity=0.052 Sum_probs=102.8
Q ss_pred CCCCCeEEecccccChHH-HHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc--cccccCCC
Q 016420 139 CSSLTSISLYRCNVTDVG-LEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI--GFNGCSPT 215 (390)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~ 215 (390)
+++|+.|++++|.++... .......+++|+.|+++++. +.... .....+++|+.|++.++...... ......++
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 455555555555332211 01112235555555555443 11100 11122555666665554432221 12233456
Q ss_pred CCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCc
Q 016420 216 LAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLE 295 (390)
Q Consensus 216 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 295 (390)
|++|++++|.+.......+..+++|++|+++++..... ........+++|+.|++++|. ++...... ...+++|+
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~ 500 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLSKCQ-LEQISWGV-FDTLHRLQ 500 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECCCCc-CCccChhh-hcccccCC
Confidence 77777777666555555566667777777766543210 000112346778888887776 55432222 23477788
Q ss_pred eeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCC-CCceeeccccCC
Q 016420 296 EWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCK-QLLILYANKKNS 356 (390)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~-~L~~L~l~~~c~ 356 (390)
.|+++++. ++...... ...+++|+.|++++| .++.. ......++ +|+.|++++ ++
T Consensus 501 ~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~--p~~~~~l~~~L~~l~l~~-N~ 556 (606)
T 3vq2_A 501 LLNMSHNN-LLFLDSSH-YNQLYSLSTLDCSFN-RIETS--KGILQHFPKSLAFFNLTN-NS 556 (606)
T ss_dssp EEECCSSC-CSCEEGGG-TTTCTTCCEEECTTS-CCCCE--ESCGGGSCTTCCEEECCS-CC
T ss_pred EEECCCCc-CCCcCHHH-ccCCCcCCEEECCCC-cCccc--CHhHhhhcccCcEEEccC-CC
Confidence 88887763 33321111 234678888888877 46532 11133455 588888877 44
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.47 E-value=1.5e-14 Score=130.37 Aligned_cols=136 Identities=11% Similarity=0.043 Sum_probs=89.5
Q ss_pred CCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcc
Q 016420 87 FQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCST 166 (390)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 166 (390)
+++++.++++++. ++.- ...+...+++|++|+++++. +...... ....+++|++|++++|.++......+ ..+++
T Consensus 44 l~~l~~l~l~~~~-l~~l-~~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPL 118 (390)
T ss_dssp GCCCSEEEEESCE-ESEE-CTHHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred cCCceEEEecCCc-hhhC-ChhHhcccccCcEEECCCCc-ccccChh-hccCCCCcCEEECCCCCCCcCCHHHh-cCCCC
Confidence 6889999998753 2221 12233456999999999875 4432211 23458999999999996654322222 44899
Q ss_pred cceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCeEEeeccCCChh
Q 016420 167 LMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQLGPE 229 (390)
Q Consensus 167 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 229 (390)
|++|+++++. ++... ..+...+++|++|+++++..... .......++|++|++++|.+...
T Consensus 119 L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 119 LTVLVLERND-LSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCEEECCCCc-cCcCC-HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 9999998875 44211 12224589999999998764322 12234457899999999887654
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.46 E-value=2.9e-14 Score=133.55 Aligned_cols=110 Identities=14% Similarity=0.072 Sum_probs=68.6
Q ss_pred HHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHH
Q 016420 82 RLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILA 161 (390)
Q Consensus 82 ~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~ 161 (390)
..+..+++|++|+++++. +.... +.....+++|++|+++++. ++. +... .+++|++|++++|.++...+....
T Consensus 39 ~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~ 111 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNR-IQYLD-ISVFKFNQELEYLDLSHNK-LVK--ISCH--PTVNLKHLDLSFNAFDALPICKEF 111 (520)
T ss_dssp HHHTTCTTCCEEECCSSC-CCEEE-GGGGTTCTTCCEEECCSSC-CCE--EECC--CCCCCSEEECCSSCCSSCCCCGGG
T ss_pred hhccccccccEEecCCCc-cCCcC-hHHhhcccCCCEEecCCCc-eee--cCcc--ccCCccEEeccCCccccccchhhh
Confidence 445678888888888653 33221 1122346888899888864 432 1111 578899999988866542221223
Q ss_pred hcCcccceeeccCCCCCCHHHHHHHHHcCCCC--CEEeccccCc
Q 016420 162 STCSTLMRVNLAYCLHISDCGLRALSQGCSQL--TAVRTSSCRT 203 (390)
Q Consensus 162 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~ 203 (390)
..+++|++|+++++. +....+ ..+++| +.|++.++..
T Consensus 112 ~~l~~L~~L~L~~n~-l~~~~~----~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 112 GNMSQLKFLGLSTTH-LEKSSV----LPIAHLNISKVLLVLGET 150 (520)
T ss_dssp GGCTTCCEEEEEESS-CCGGGG----GGGTTSCEEEEEEEECTT
T ss_pred ccCCcceEEEecCcc-cchhhc----cccccceeeEEEeecccc
Confidence 447889999988765 555332 236677 8888877643
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.46 E-value=1.1e-13 Score=130.66 Aligned_cols=62 Identities=8% Similarity=-0.034 Sum_probs=34.4
Q ss_pred HHcCCCCCEEeccccCccCc----ccccccCCCCCeEEeeccCCChhhHHhh----hcCCCccEEEecCC
Q 016420 187 SQGCSQLTAVRTSSCRTVTG----IGFNGCSPTLAYIDAESCQLGPEGIIGI----VSGGGLEFLNVSGM 248 (390)
Q Consensus 187 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~ 248 (390)
...+++|+.|+++++..... ..+....++|+.|+++++.+.+..+..+ ...+.|+.+++.++
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred HhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 34578888888887653321 1222344677777777776655444333 23344555554443
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.46 E-value=3e-14 Score=125.33 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=15.9
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
++|++|++++|.+.......+..+++|+.|+++++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 34444444444444433334444444444444443
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.44 E-value=9e-14 Score=130.26 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=31.2
Q ss_pred CCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 292 PLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
++|+.|+++++. ++ .+..-...+++|++|+++++ .++..... ....+++|+.|++++
T Consensus 421 ~~L~~L~Ls~N~-l~--~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 421 PRIKVLDLHSNK-IK--SIPKQVVKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHT 477 (520)
T ss_dssp TTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCS
T ss_pred ccCCEEECCCCc-cc--ccchhhhcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcC
Confidence 456666666542 22 11111124677777777776 45532111 233577888888887
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.44 E-value=1.8e-14 Score=137.59 Aligned_cols=252 Identities=17% Similarity=0.091 Sum_probs=172.2
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhc
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILAST 163 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 163 (390)
+..+++|+.|+++++.. .. +. ....+++|++|++++|.. . .+..+ .+++|++|++++|...... . ...
T Consensus 281 ~~~l~~L~~L~l~~~~~-~~--l~-~l~~~~~L~~L~l~~n~l-~--~lp~~--~l~~L~~L~l~~n~~~~~~--~-~~~ 348 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSI-KY--LE-DVPKHFKWQSLSIIRCQL-K--QFPTL--DLPFLKSLTLTMNKGSISF--K-KVA 348 (606)
T ss_dssp CGGGTTCSEEEEESCCC-CC--CC-CCCTTCCCSEEEEESCCC-S--SCCCC--CCSSCCEEEEESCSSCEEC--C-CCC
T ss_pred cccCCCCCEEEecCccc-hh--hh-hccccccCCEEEcccccC-c--ccccC--CCCccceeeccCCcCccch--h-hcc
Confidence 56789999999997643 22 11 223458999999999863 2 22233 6899999999998322211 1 234
Q ss_pred CcccceeeccCCCCCCHHH-HHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhH-HhhhcCCCcc
Q 016420 164 CSTLMRVNLAYCLHISDCG-LRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGI-IGIVSGGGLE 241 (390)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~ 241 (390)
+++|+.|+++++. ++... +......+++|+.|++.++............++|++|++++|.+..... ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 8999999998875 33221 1122345999999999988744333334456899999999998766544 5677889999
Q ss_pred EEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCC
Q 016420 242 FLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLE 321 (390)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (390)
.|+++++........ ....+++|+.|+++++. +++..+......+++|+.|++++|. ++...... ...+++|+
T Consensus 428 ~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~ 500 (606)
T 3vq2_A 428 YLDISYTNTKIDFDG----IFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGV-FDTLHRLQ 500 (606)
T ss_dssp EEECTTSCCEECCTT----TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCC
T ss_pred EEECcCCCCCccchh----hhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCc-CCccChhh-hcccccCC
Confidence 999998764322111 22358899999999987 6653233334568999999999974 44322222 23578999
Q ss_pred eEEcccccccCchHHHHHHHcCCCCceeeccccCCcCC
Q 016420 322 KLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVS 359 (390)
Q Consensus 322 ~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~ 359 (390)
+|++++| .+++..... ...+++|+.|++++ ++++
T Consensus 501 ~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~l~~--N~l~ 534 (606)
T 3vq2_A 501 LLNMSHN-NLLFLDSSH-YNQLYSLSTLDCSF--NRIE 534 (606)
T ss_dssp EEECCSS-CCSCEEGGG-TTTCTTCCEEECTT--SCCC
T ss_pred EEECCCC-cCCCcCHHH-ccCCCcCCEEECCC--CcCc
Confidence 9999998 576543223 33689999999999 5565
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.44 E-value=9.2e-15 Score=127.47 Aligned_cols=226 Identities=12% Similarity=-0.054 Sum_probs=152.7
Q ss_pred CCccEEEcCCCCCCCh--HHHHHHHHhCCCCCeEEecc-cccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcC
Q 016420 114 SKLQTLYLDCCFQITD--NGLSVIATGCSSLTSISLYR-CNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGC 190 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 190 (390)
.++++|+++++. +.. ... .....+++|++|++++ +.+.......+ ..+++|++|+++++. ++......+ ..+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTN-VSGAIPDFL-SQI 124 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEEC-CEEECCGGG-GGC
T ss_pred ceEEEEECCCCC-ccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCe-eCCcCCHHH-hCC
Confidence 589999999875 432 212 2334589999999995 54443222223 448999999998875 432111122 358
Q ss_pred CCCCEEeccccCccC-cccccccCCCCCeEEeeccCCChhhHHhhhcCC-CccEEEecCCccc-cccchhHhhhhccCCC
Q 016420 191 SQLTAVRTSSCRTVT-GIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGG-GLEFLNVSGMSST-LNGGGLAAIGTGFATR 267 (390)
Q Consensus 191 ~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~ 267 (390)
++|++|+++++.... ........++|++|++++|.+....+..+..++ .|+.|+++++... ..+..+. ..+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-----~l~- 198 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-----NLN- 198 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-----GCC-
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-----CCc-
Confidence 999999999876442 223344568999999999998877777888887 9999999987643 1222222 244
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCc
Q 016420 268 LKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLL 347 (390)
Q Consensus 268 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~ 347 (390)
|+.|+++++. ++.... ..+..+++|+.|+++++. ++... .. ...+++|++|+++++ .+++.. ......+++|+
T Consensus 199 L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~-p~~l~~l~~L~ 271 (313)
T 1ogq_A 199 LAFVDLSRNM-LEGDAS-VLFGSDKNTQKIHLAKNS-LAFDL-GK-VGLSKNLNGLDLRNN-RIYGTL-PQGLTQLKFLH 271 (313)
T ss_dssp CSEEECCSSE-EEECCG-GGCCTTSCCSEEECCSSE-ECCBG-GG-CCCCTTCCEEECCSS-CCEECC-CGGGGGCTTCC
T ss_pred ccEEECcCCc-ccCcCC-HHHhcCCCCCEEECCCCc-eeeec-Cc-ccccCCCCEEECcCC-cccCcC-ChHHhcCcCCC
Confidence 9999999987 554322 223458999999999875 33111 11 345789999999998 566432 22334789999
Q ss_pred eeeccccCCcCC
Q 016420 348 ILYANKKNSRVS 359 (390)
Q Consensus 348 ~L~l~~~c~~l~ 359 (390)
.|++++ +.++
T Consensus 272 ~L~Ls~--N~l~ 281 (313)
T 1ogq_A 272 SLNVSF--NNLC 281 (313)
T ss_dssp EEECCS--SEEE
T ss_pred EEECcC--Cccc
Confidence 999999 5554
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.43 E-value=5.3e-14 Score=121.07 Aligned_cols=209 Identities=13% Similarity=-0.006 Sum_probs=129.5
Q ss_pred CCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccc-cChHHHHHHHhcCc
Q 016420 87 FQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCN-VTDVGLEILASTCS 165 (390)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~ 165 (390)
.+++++|+++++. ++.... .....+++|++|+++++. ++..... ....+++|++|++++|. ++......+ ..++
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPA-ASFRACRNLTILWLHSNV-LARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATF-HGLG 105 (285)
T ss_dssp CTTCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTT-TTCT
T ss_pred CCCceEEEeeCCc-CCccCH-HHcccCCCCCEEECCCCc-cceeCHh-hcCCccCCCEEeCCCCCCccccCHHHh-cCCc
Confidence 4689999999753 333211 122456899999999874 4432222 23458999999999985 654322223 3489
Q ss_pred ccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc-cccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEE
Q 016420 166 TLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLN 244 (390)
Q Consensus 166 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 244 (390)
+|++|+++++. ++.... .....+++|++|++.++...... ......++|++|++++|.+.......+..+++|+.|+
T Consensus 106 ~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 106 RLHTLHLDRCG-LQELGP-GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp TCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCc-CCEECH-hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 99999998875 332211 12234889999999887543221 2234457889999988887765555566677888888
Q ss_pred ecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChh
Q 016420 245 VSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFP 308 (390)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 308 (390)
++++..... .......+++|+.|+++++. ++..... ....+++|+.|+++++....+.
T Consensus 184 l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 184 LHQNRVAHV----HPHAFRDLGRLMTLYLFANN-LSALPTE-ALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CCSSCCCEE----CTTTTTTCTTCCEEECCSSC-CSCCCHH-HHTTCTTCCEEECCSSCEECSG
T ss_pred CCCCccccc----CHhHccCcccccEeeCCCCc-CCcCCHH-HcccCcccCEEeccCCCccCCC
Confidence 877643211 11122346778888887776 5543332 2345777777777776533333
No 47
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.43 E-value=1.8e-14 Score=137.85 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=50.7
Q ss_pred hCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCCh-HHHHHHHH-----hCCCCCeEEecccccChHHHHH
Q 016420 86 RFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITD-NGLSVIAT-----GCSSLTSISLYRCNVTDVGLEI 159 (390)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~-----~~~~L~~L~l~~~~~~~~~~~~ 159 (390)
.+++|++|+++++..... ++.....+++|++|+++++..++. .....+.. .+++|++|++++|.++. +..
T Consensus 247 ~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~--ip~ 322 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--FPV 322 (636)
T ss_dssp GCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS--CCC
T ss_pred ccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc--cCc
Confidence 678888888887542221 111223457888888888654555 33333322 24778888888775552 211
Q ss_pred --HHhcCcccceeeccCCC
Q 016420 160 --LASTCSTLMRVNLAYCL 176 (390)
Q Consensus 160 --l~~~~~~L~~L~l~~~~ 176 (390)
....+++|+.|+++++.
T Consensus 323 ~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp HHHHTTCTTCCEEECCSCC
T ss_pred hhhhccCCCCCEEeCcCCc
Confidence 23346777777776654
No 48
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=5.3e-12 Score=112.21 Aligned_cols=192 Identities=25% Similarity=0.276 Sum_probs=116.6
Q ss_pred CCCCCeEEecccccChHHHHHHHhc----CcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCC
Q 016420 139 CSSLTSISLYRCNVTDVGLEILAST----CSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSP 214 (390)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 214 (390)
.++|++|++++|.+++.+...+... +++|++|++++|. +++.++..+...+++|+.|+++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls--------------- 134 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQ--------------- 134 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECC---------------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcC---------------
Confidence 4778888888887777665555442 3578888888774 7777777666655555555554
Q ss_pred CCCeEEeeccCCChhhHHhhh-----cCCCccEEEecCCccccccchhHhh--hhccCCCccEEecCCCCCCChHHHHHH
Q 016420 215 TLAYIDAESCQLGPEGIIGIV-----SGGGLEFLNVSGMSSTLNGGGLAAI--GTGFATRLKTLNLRMCRNVGDESIVAI 287 (390)
Q Consensus 215 ~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l 287 (390)
+|.+.+.+...+. ..+.|++|+++++.. ++.+...+ .....++|++|+|++|. +++.+...+
T Consensus 135 --------~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L 203 (372)
T 3un9_A 135 --------LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL--TAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELL 203 (372)
T ss_dssp --------SSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCC--HHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHH
T ss_pred --------CCCCCHHHHHHHHHHHHhcCCccceeeCCCCCC--ChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHH
Confidence 4444444444332 234555555555431 22222222 12346788888888887 777765544
Q ss_pred H---hcCCCCceeecccccCCChhHHHHHhh---cCCCCCeEEcccccccCchHHHHHHHcC-CC---Cceee--ccccC
Q 016420 288 A---KGCPLLEEWNLSLCHEVRFPGWASVGL---NCNNLEKLHVNRCRNLCDRGLQALRDGC-KQ---LLILY--ANKKN 355 (390)
Q Consensus 288 ~---~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~---L~~L~--l~~~c 355 (390)
. ..+++|+.|+|++| .+++.+...++. .+++|++|++++| .|++.+...+.... +. |+.+. +.+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~-- 279 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEG-- 279 (372)
T ss_dssp HHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----
T ss_pred HHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcC--
Confidence 3 34567888888876 477776665543 4578888888887 58887777665421 11 66666 555
Q ss_pred CcCChH
Q 016420 356 SRVSST 361 (390)
Q Consensus 356 ~~l~~~ 361 (390)
+.++++
T Consensus 280 ~~~~~~ 285 (372)
T 3un9_A 280 TAVSEY 285 (372)
T ss_dssp --CHHH
T ss_pred CccCHH
Confidence 555554
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.41 E-value=3.5e-14 Score=130.51 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=53.4
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCC
Q 016420 113 GSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQ 192 (390)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 192 (390)
+++|++|+++++. +...... .+..+++|+.|++++|.++..... ....+++|++|+++++. +..... .....+++
T Consensus 98 l~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~ 172 (452)
T 3zyi_A 98 LHHLEVLQLGRNS-IRQIEVG-AFNGLASLNTLELFDNWLTVIPSG-AFEYLSKLRELWLRNNP-IESIPS-YAFNRVPS 172 (452)
T ss_dssp CTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCSBCCTT-TSSSCTTCCEEECCSCC-CCEECT-TTTTTCTT
T ss_pred CCCCCEEECCCCc-cCCcChh-hccCcccCCEEECCCCcCCccChh-hhcccCCCCEEECCCCC-cceeCH-hHHhcCCc
Confidence 4556666665542 2221111 122355566666655543321111 11234555666555543 221110 01123555
Q ss_pred CCEEeccccCccCccc--ccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 193 LTAVRTSSCRTVTGIG--FNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 193 L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
|+.|++.++....... .....++|++|++++|.+... ..+..+++|+.|+++++
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGN 228 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTS
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCC
Confidence 5555555543332211 122234555555555544321 22334445555555444
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=3.6e-14 Score=135.00 Aligned_cols=136 Identities=11% Similarity=0.030 Sum_probs=89.3
Q ss_pred CCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcc
Q 016420 87 FQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCST 166 (390)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 166 (390)
+++++.++++++. +.. ....+...+++|++|+++++. +...... .+..+++|+.|++++|.++...... ...+++
T Consensus 50 l~~l~~l~l~~~~-l~~-lp~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRK-LPAALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCE-ESE-ECTHHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCCCCTTT-TTTCTT
T ss_pred CCCceEEEeeCCC-CCC-cCHHHHccCCCCcEEECCCCC-CCCCChH-HhcCCCCCCEEECCCCcCCCCCHHH-HcCCCC
Confidence 5788999998652 222 112234556999999999875 4432211 2345899999999999665432222 245899
Q ss_pred cceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc-cccccCCCCCeEEeeccCCChh
Q 016420 167 LMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCSPTLAYIDAESCQLGPE 229 (390)
Q Consensus 167 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 229 (390)
|+.|+++++. ++... ..+...+++|+.|+++++...... ......++|++|++++|.+...
T Consensus 125 L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 125 LTVLVLERND-LSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCEEEeeCCC-CCCCC-HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 9999999875 43211 122245899999999988643321 2234457899999999887654
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.41 E-value=3e-14 Score=130.50 Aligned_cols=225 Identities=16% Similarity=0.082 Sum_probs=120.8
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
++++.|+++++. +...... ....+++|++|+++++. +...... .+..+++|++|++++|.++..... ....+++|
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~Ls~n~-i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVN-SFKHLRHLEILQLSRNH-IRTIEIG-AFNGLANLNTLELFDNRLTTIPNG-AFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCC-CCEECTT-TTSSCSSCCEEECCSSC-CCEECGG-GGTTCSSCCEEECCSSCCSSCCTT-TSCSCSSC
T ss_pred CCCcEEEccCCc-CCeeCHH-HhhCCCCCCEEECCCCc-CCccChh-hccCCccCCEEECCCCcCCeeCHh-HhhccccC
Confidence 567888887643 3321111 12345778888888764 3322211 233467888888887755432211 12346778
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCccc--ccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEe
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIG--FNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNV 245 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 245 (390)
++|+++++. +...... ....+++|+.|++.++....... .....++|++|++++|.+... ..+..+++|+.|++
T Consensus 139 ~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 139 KELWLRNNP-IESIPSY-AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDL 214 (440)
T ss_dssp CEEECCSCC-CCEECTT-TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEEC
T ss_pred ceeeCCCCc-ccccCHH-HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEEC
Confidence 888887664 3321111 12247778888877755443321 233456778888877765532 23556667777777
Q ss_pred cCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEc
Q 016420 246 SGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHV 325 (390)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 325 (390)
+++..... ..-....+++|+.|+++++. ++...... +..+++|+.|+|+++. ++.... .....+++|+.|++
T Consensus 215 s~N~l~~~----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 215 SGNHLSAI----RPGSFQGLMHLQKLWMIQSQ-IQVIERNA-FDNLQSLVEINLAHNN-LTLLPH-DLFTPLHHLERIHL 286 (440)
T ss_dssp TTSCCCEE----CTTTTTTCTTCCEEECTTCC-CCEECTTS-STTCTTCCEEECTTSC-CCCCCT-TTTSSCTTCCEEEC
T ss_pred CCCccCcc----ChhhhccCccCCEEECCCCc-eeEEChhh-hcCCCCCCEEECCCCC-CCccCh-hHhccccCCCEEEc
Confidence 76543211 11122346677777777765 54432222 2346677777777653 332111 11223567777777
Q ss_pred cccc
Q 016420 326 NRCR 329 (390)
Q Consensus 326 ~~~~ 329 (390)
++++
T Consensus 287 ~~Np 290 (440)
T 3zyj_A 287 HHNP 290 (440)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6653
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.41 E-value=9.4e-14 Score=123.39 Aligned_cols=239 Identities=15% Similarity=0.058 Sum_probs=156.9
Q ss_pred HHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHh
Q 016420 83 LLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILAS 162 (390)
Q Consensus 83 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 162 (390)
.+..+++|++|+++++ .++... ......+++|++|+++++. ++... ......+++|++|++++|.++.........
T Consensus 71 ~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 146 (353)
T 2z80_A 71 DLQRCVNLQALVLTSN-GINTIE-EDSFSSLGSLEHLDLSYNY-LSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146 (353)
T ss_dssp TTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSC-CSSCC-HHHHTTCTTCSEEECTTCCCSSSCSSCSCT
T ss_pred HhccCCCCCEEECCCC-ccCccC-HhhcCCCCCCCEEECCCCc-CCcCC-HhHhCCCccCCEEECCCCCCcccCchhhhc
Confidence 3467899999999975 343311 1112346899999999875 44322 223456899999999999665321101234
Q ss_pred cCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCeEEeeccCCChhhHHhhhcCCCcc
Q 016420 163 TCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLE 241 (390)
Q Consensus 163 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 241 (390)
.+++|+.|+++++..++......+ ..+++|++|+++++..... .......++|++|++++|.+.......+...++|+
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 225 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEE
T ss_pred cCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhccccc
Confidence 589999999988743433211122 3488999999998764322 22234457899999999998665555556789999
Q ss_pred EEEecCCcccccc-chhHhhhhccCCCccEEecCCCCCCChHHHHHH---HhcCCCCceeecccccCCChhHHHHHhhcC
Q 016420 242 FLNVSGMSSTLNG-GGLAAIGTGFATRLKTLNLRMCRNVGDESIVAI---AKGCPLLEEWNLSLCHEVRFPGWASVGLNC 317 (390)
Q Consensus 242 ~L~l~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (390)
.|+++++...... ..+. .....+.++.+++.++. +++..+..+ ...+++|+.|+++++. ++... ..+...+
T Consensus 226 ~L~L~~n~l~~~~~~~l~--~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~-~~~~~~l 300 (353)
T 2z80_A 226 CLELRDTDLDTFHFSELS--TGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVP-DGIFDRL 300 (353)
T ss_dssp EEEEESCBCTTCCCC--------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCC-TTTTTTC
T ss_pred EEECCCCccccccccccc--cccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCC-CCccC-HHHHhcC
Confidence 9999987543211 1121 11246788999999987 887665443 4578999999999874 44211 1222457
Q ss_pred CCCCeEEcccccccC
Q 016420 318 NNLEKLHVNRCRNLC 332 (390)
Q Consensus 318 ~~L~~L~l~~~~~i~ 332 (390)
++|++|++++++ ++
T Consensus 301 ~~L~~L~L~~N~-~~ 314 (353)
T 2z80_A 301 TSLQKIWLHTNP-WD 314 (353)
T ss_dssp TTCCEEECCSSC-BC
T ss_pred CCCCEEEeeCCC-cc
Confidence 899999999984 44
No 53
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.41 E-value=1.8e-12 Score=112.54 Aligned_cols=187 Identities=15% Similarity=0.104 Sum_probs=112.2
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQL 193 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 193 (390)
++|++|+++++. +.. +.. ...+++|+.|++++|.+++... ...+++|+.|+++++. +... .. ...+++|
T Consensus 41 ~~L~~L~l~~~~-i~~--l~~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L 109 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTT--IEG-VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP-LKNV--SA-IAGLQSI 109 (308)
T ss_dssp HTCCEEECTTSC-CCC--CTT-GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC-CSCC--GG-GTTCTTC
T ss_pred CCcCEEEeeCCC-ccC--chh-hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc-CCCc--hh-hcCCCCC
Confidence 688999998874 332 112 3457889999998886654322 4557888999888765 3332 12 2347888
Q ss_pred CEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEec
Q 016420 194 TAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNL 273 (390)
Q Consensus 194 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 273 (390)
++|+++++....... ....++|++|++++|.+..... +..+++|+.|+++++.... +.. ...+++|+.|++
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~----~~~--l~~l~~L~~L~l 180 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD----LTP--LANLSKLTTLKA 180 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEEC
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC----Chh--hcCCCCCCEEEC
Confidence 888888775433222 3445678888888777654332 5666777777776653221 111 234667777777
Q ss_pred CCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccc
Q 016420 274 RMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
+++. +++... ...+++|+.|+++++. +++.. . ...+++|+.|+++++
T Consensus 181 ~~n~-l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 181 DDNK-ISDISP---LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp CSSC-CCCCGG---GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEE
T ss_pred CCCc-cCcChh---hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCC
Confidence 7765 443221 3446677777776653 33222 1 234667777777666
No 54
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.40 E-value=1e-12 Score=101.92 Aligned_cols=105 Identities=13% Similarity=0.225 Sum_probs=85.1
Q ss_pred CccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhc---CCCCceeecccccCCChhHHHHHhh
Q 016420 239 GLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKG---CPLLEEWNLSLCHEVRFPGWASVGL 315 (390)
Q Consensus 239 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~ 315 (390)
.|+.|+++++. .++.++..+ ..+++|++|+|++|..++|.++..+... +++|+.|+|++|..++|.++..+.
T Consensus 62 ~L~~LDLs~~~--Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 62 KIQAIDATDSC--IMSIGFDHM--EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CEEEEEEESCC--CCGGGGGGG--TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred eEeEEeCcCCC--ccHHHHHHh--cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence 45555665553 455566544 3589999999999988999999999873 578999999999999999999987
Q ss_pred cCCCCCeEEcccccccCchH--HHHHHHcCCCCce
Q 016420 316 NCNNLEKLHVNRCRNLCDRG--LQALRDGCKQLLI 348 (390)
Q Consensus 316 ~~~~L~~L~l~~~~~i~~~~--~~~l~~~~~~L~~ 348 (390)
.|++|++|++++|+.|++.+ ...+.+.+|+++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 58999999999999999976 4566678888874
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.40 E-value=5.8e-14 Score=134.37 Aligned_cols=252 Identities=12% Similarity=0.064 Sum_probs=162.7
Q ss_pred HHHhhCCCccEEEecCCCCCCh-hHHHHHHH-----cCCCccEEEcCCCCCCChHHHHH--HHHhCCCCCeEEecccccC
Q 016420 82 RLLTRFQHLNWLSLSGCTELPD-SGLNQLQN-----YGSKLQTLYLDCCFQITDNGLSV--IATGCSSLTSISLYRCNVT 153 (390)
Q Consensus 82 ~~~~~~~~L~~L~l~~~~~~~~-~~l~~l~~-----~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~ 153 (390)
..+..+++|++|+++++..++. .....+.. .+++|++|+++++. ++ .+.. ....+++|+.|++++|.++
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence 3456788999999997653655 33333322 24899999999875 44 2222 3456899999999998665
Q ss_pred hHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCC-CCEEeccccCccCccccccc--CCCCCeEEeeccCCChhh
Q 016420 154 DVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQ-LTAVRTSSCRTVTGIGFNGC--SPTLAYIDAESCQLGPEG 230 (390)
Q Consensus 154 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~ 230 (390)
.... ....+++|+.|+++++. +. .+......+++ |+.|+++++....-...... .++|++|++++|.+....
T Consensus 344 g~ip--~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 344 GKLP--AFGSEIKLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp EECC--CCEEEEEESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred cchh--hhCCCCCCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcc
Confidence 2211 22347889999998764 33 11111234777 99999998764422222222 247999999999887766
Q ss_pred HHhhh-------cCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHh-------cCCCCce
Q 016420 231 IIGIV-------SGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAK-------GCPLLEE 296 (390)
Q Consensus 231 ~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-------~~~~L~~ 296 (390)
+..+. ..++|+.|+++++....-+.. ....+++|+.|+++++. ++.... .... .+++|+.
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~----~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKE----LFSTGSPLSSINLMGNM-LTEIPK-NSLKDENENFKNTYLLTS 492 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH----HHHTTCCCSEEECCSSC-CSBCCS-SSSEETTEECTTGGGCCE
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHH----HHccCCCCCEEECCCCC-CCCcCH-HHhccccccccccCCccE
Confidence 55555 667899999988754322221 22347899999999987 652211 1111 2238999
Q ss_pred eecccccCCChhHHHHHh--hcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 297 WNLSLCHEVRFPGWASVG--LNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 297 L~l~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
|+++++. ++. +.... ..+++|+.|+++++ .++. +..-...+++|+.|++++
T Consensus 493 L~Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 493 IDLRFNK-LTK--LSDDFRATTLPYLVGIDLSYN-SFSK--FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp EECCSSC-CCB--CCGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCSSCCEEECCS
T ss_pred EECcCCc-CCc--cChhhhhccCCCcCEEECCCC-CCCC--cChhhhcCCCCCEEECCC
Confidence 9999864 442 22222 26789999999998 5765 333334689999999954
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=1.3e-13 Score=134.77 Aligned_cols=257 Identities=14% Similarity=0.102 Sum_probs=130.7
Q ss_pred HHHhhCCCccEEEecCCCCCCh-hHHHHHH------HcCCCccEEEcCCCCCCChHHHHH--HHHhCCCCCeEEeccccc
Q 016420 82 RLLTRFQHLNWLSLSGCTELPD-SGLNQLQ------NYGSKLQTLYLDCCFQITDNGLSV--IATGCSSLTSISLYRCNV 152 (390)
Q Consensus 82 ~~~~~~~~L~~L~l~~~~~~~~-~~l~~l~------~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~ 152 (390)
..+..+++|+.|+++++..++. .....+. ..+++|++|+++++. +. .+.. ....+++|+.|++++|.+
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~ip~~~~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--EFPASASLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--BCCCHHHHTTCTTCCEEECTTSCC
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--ccCChhhhhcCCCCCEEECCCCCc
Confidence 4456789999999997653554 2222222 234699999999875 44 2222 345689999999999866
Q ss_pred ChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCC-CCEEeccccCccCcccccccC------------------
Q 016420 153 TDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQ-LTAVRTSSCRTVTGIGFNGCS------------------ 213 (390)
Q Consensus 153 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~------------------ 213 (390)
+. +. ....+++|+.|+++++. +. .+......+++ |+.|+++++....-.......
T Consensus 586 ~~--lp-~~~~L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 586 RH--LE-AFGTNVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CB--CC-CCCTTSEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred cc--ch-hhcCCCcceEEECcCCc-cc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCc
Confidence 52 22 23447888888888764 33 12111234667 888888776532111111111
Q ss_pred -------------CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhh---hccCCCccEEecCCCC
Q 016420 214 -------------PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIG---TGFATRLKTLNLRMCR 277 (390)
Q Consensus 214 -------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~ 277 (390)
++|+.|++++|.+.......+..+++|+.|+++++....-+....... ...+++|+.|++++|.
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC
Confidence 244555555554442222222345566666665543221111111000 0012266666666665
Q ss_pred CCChHHHHHHH-hcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEccccc-----ccCchHHHHHHHcCCCCceeec
Q 016420 278 NVGDESIVAIA-KGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCR-----NLCDRGLQALRDGCKQLLILYA 351 (390)
Q Consensus 278 ~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-----~i~~~~~~~l~~~~~~L~~L~l 351 (390)
++... ..+. ..+++|+.|+|+++. ++. +..-...+++|+.|+++++. .+... +......+++|+.|++
T Consensus 740 -L~~lp-~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 740 -LTSLS-DDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQI 813 (876)
T ss_dssp -CCCCC-GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEEC
T ss_pred -Cccch-HHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEEC
Confidence 44211 1111 246667777776653 222 11112245666666665522 12211 1112224666666666
Q ss_pred cc
Q 016420 352 NK 353 (390)
Q Consensus 352 ~~ 353 (390)
++
T Consensus 814 s~ 815 (876)
T 4ecn_A 814 GS 815 (876)
T ss_dssp CS
T ss_pred CC
Confidence 66
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.39 E-value=1.9e-14 Score=136.50 Aligned_cols=249 Identities=16% Similarity=0.077 Sum_probs=164.1
Q ss_pred HHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHh
Q 016420 83 LLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILAS 162 (390)
Q Consensus 83 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 162 (390)
.+..+++|++|+++++. +.. ++.....+ +|++|+++++. +.. +.. ..+++|+.|++.++.+...... .
T Consensus 277 ~~~~l~~L~~L~l~~~~-l~~--l~~~~~~~-~L~~L~l~~n~-~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~---~ 344 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVT-IER--VKDFSYNF-GWQHLELVNCK-FGQ--FPT--LKLKSLKRLTFTSNKGGNAFSE---V 344 (570)
T ss_dssp TTGGGTTCSEEEEESCE-ECS--CCBCCSCC-CCSEEEEESCB-CSS--CCB--CBCSSCCEEEEESCBSCCBCCC---C
T ss_pred hhcCcCcccEEEecCcc-chh--hhhhhccC-CccEEeeccCc-ccc--cCc--ccccccCEEeCcCCcccccccc---c
Confidence 34567889999998653 221 11122334 89999998875 221 111 2578999999998844322111 4
Q ss_pred cCcccceeeccCCCCCCHHH-HHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhH-HhhhcCCCc
Q 016420 163 TCSTLMRVNLAYCLHISDCG-LRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGI-IGIVSGGGL 240 (390)
Q Consensus 163 ~~~~L~~L~l~~~~~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L 240 (390)
.+++|+.|+++++. ++... .......+++|+.|++.++............++|++|++++|.+..... ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 58999999998875 43221 1122335999999999988644332224456899999999988655433 356778999
Q ss_pred cEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCC
Q 016420 241 EFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNL 320 (390)
Q Consensus 241 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 320 (390)
+.|+++++........ ....+++|+.|++++|. +.+..+......+++|+.|++++|. +++.....+ ..+++|
T Consensus 424 ~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L 496 (570)
T 2z63_A 424 IYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSLSSL 496 (570)
T ss_dssp CEEECTTSCCEECCTT----TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTTC
T ss_pred CEEeCcCCcccccchh----hhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCc-cccCChhhh-hcccCC
Confidence 9999998754322111 22358899999999987 6533232334568999999999974 443322222 357899
Q ss_pred CeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 321 EKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 321 ~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
++|++++| .+++.... ....+++|+.|++++
T Consensus 497 ~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 497 QVLNMASN-QLKSVPDG-IFDRLTSLQKIWLHT 527 (570)
T ss_dssp CEEECCSS-CCSCCCTT-TTTTCTTCCEEECCS
T ss_pred CEEeCCCC-cCCCCCHH-HhhcccCCcEEEecC
Confidence 99999998 57654222 234789999999998
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=8.9e-14 Score=128.60 Aligned_cols=239 Identities=15% Similarity=0.075 Sum_probs=133.7
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhc
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILAST 163 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 163 (390)
...+++|++|+++++. +..... .....+++|++|+++++. ++.... ...+++|+.|++++|.++... .
T Consensus 30 ~~~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~l~~l~------~ 97 (487)
T 3oja_A 30 RQSAWNVKELDLSGNP-LSQISA-ADLAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNYVQELL------V 97 (487)
T ss_dssp STTGGGCCEEECCSSC-CCCCCG-GGGTTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSSEEEEEE------E
T ss_pred cccCCCccEEEeeCCc-CCCCCH-HHHhCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCCcCCCCC------C
Confidence 3445578888888653 332111 112345788888888764 332111 345778888888887554311 2
Q ss_pred CcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc-cccccCCCCCeEEeeccCCChhhHHhhh-cCCCcc
Q 016420 164 CSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCSPTLAYIDAESCQLGPEGIIGIV-SGGGLE 241 (390)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~ 241 (390)
.++|+.|+++++. ++.... ..+++|+.|+++++...... .....+++|+.|++++|.+....+..+. .+++|+
T Consensus 98 ~~~L~~L~L~~N~-l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 GPSIETLHAANNN-ISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp CTTCCEEECCSSC-CCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCCcCEEECcCCc-CCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 4678888887764 332111 13577777777776533321 1223456777777777777665555554 567777
Q ss_pred EEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCC
Q 016420 242 FLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLE 321 (390)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (390)
.|+++++..... . ....+++|+.|+++++. ++..... +..+++|+.|+++++. ++. +......+++|+
T Consensus 173 ~L~Ls~N~l~~~----~--~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~ 240 (487)
T 3oja_A 173 HLNLQYNFIYDV----K--GQVVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNNK-LVL--IEKALRFSQNLE 240 (487)
T ss_dssp EEECTTSCCCEE----E--CCCCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTSC-CCE--ECTTCCCCTTCC
T ss_pred EEecCCCccccc----c--ccccCCCCCEEECCCCC-CCCCCHh--HcCCCCccEEEecCCc-Ccc--cchhhccCCCCC
Confidence 777776643211 1 11136677777777765 5432211 2346677777777653 332 111123356777
Q ss_pred eEEcccccccCchHHHHHHHcCCCCceeecc
Q 016420 322 KLHVNRCRNLCDRGLQALRDGCKQLLILYAN 352 (390)
Q Consensus 322 ~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~ 352 (390)
.|+++++ .++...+......++.|+.+.+.
T Consensus 241 ~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 241 HFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTC-CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEcCCC-CCcCcchHHHHHhCCCCcEEecc
Confidence 7777766 35544455555556666655554
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.39 E-value=2.5e-12 Score=117.92 Aligned_cols=231 Identities=15% Similarity=0.131 Sum_probs=140.9
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhc
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILAST 163 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 163 (390)
+..+++|++|+++++. ++.. . ...+++|++|+++++. ++... ...+++|++|++++|.++... ...
T Consensus 60 l~~l~~L~~L~Ls~n~-l~~~--~--~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L~L~~N~l~~l~----~~~ 125 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNN-ITTL--D--LSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYLNCDTNKLTKLD----VSQ 125 (457)
T ss_dssp GGGCTTCSEEECCSSC-CSCC--C--CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECCSSCCSCCC----CTT
T ss_pred hcccCCCCEEEccCCc-CCeE--c--cccCCCCCEEECcCCC-Cceee----cCCCCcCCEEECCCCcCCeec----CCC
Confidence 4567778888887653 3321 1 2345778888887764 33321 334778888888877655421 344
Q ss_pred CcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEE
Q 016420 164 CSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFL 243 (390)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 243 (390)
+++|++|+++++. ++... ...+++|+.|++.++.......+ ...++|++|++++|.+.... +..+++|+.|
T Consensus 126 l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L 196 (457)
T 3bz5_A 126 NPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNKITELD---VSQNKLLNRL 196 (457)
T ss_dssp CTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEEECCSSCCCCCC---CTTCTTCCEE
T ss_pred CCcCCEEECCCCc-cceec----cccCCcCCEEECCCCCccccccc-ccCCcCCEEECCCCccceec---cccCCCCCEE
Confidence 6788888887664 33321 23477888888877754444332 33468888888888766532 6667788888
Q ss_pred EecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeE
Q 016420 244 NVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKL 323 (390)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (390)
+++++..... ....+++|+.|+++++. ++... ...+++|+.|+++++. ++... ...+++|+.|
T Consensus 197 ~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~-l~~ip----~~~l~~L~~L~l~~N~-l~~~~----~~~l~~L~~L 259 (457)
T 3bz5_A 197 NCDTNNITKL-------DLNQNIQLTFLDCSSNK-LTEID----VTPLTQLTYFDCSVNP-LTELD----VSTLSKLTTL 259 (457)
T ss_dssp ECCSSCCSCC-------CCTTCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEE
T ss_pred ECcCCcCCee-------ccccCCCCCEEECcCCc-ccccC----ccccCCCCEEEeeCCc-CCCcC----HHHCCCCCEE
Confidence 8877643211 13357888888888886 66532 3457888888888764 33322 1234555444
Q ss_pred ----------EcccccccCchHHHHHHHcCCCCceeeccccCCcCC
Q 016420 324 ----------HVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVS 359 (390)
Q Consensus 324 ----------~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~ 359 (390)
++++|..+.... ...|++|+.|++++ |..+.
T Consensus 260 ~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~-n~~l~ 300 (457)
T 3bz5_A 260 HCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTH-NTQLY 300 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTT-CTTCC
T ss_pred eccCCCCCEEECCCCccCCccc----ccccccCCEEECCC-Ccccc
Confidence 444443222211 23578899999988 76443
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=4.3e-14 Score=130.76 Aligned_cols=224 Identities=10% Similarity=0.002 Sum_probs=154.2
Q ss_pred cCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCC
Q 016420 112 YGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCS 191 (390)
Q Consensus 112 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 191 (390)
.+++|++|+++++. ++..... .+..+++|+.|++++|.++.... ...+++|+.|+++++. ++... ..+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~------~~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAA-DLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY-VQELL------VGP 99 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGG-GGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSE-EEEEE------ECT
T ss_pred cCCCccEEEeeCCc-CCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCc-CCCCC------CCC
Confidence 34589999999975 4432222 23458999999999996643221 4458999999998875 43211 358
Q ss_pred CCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEE
Q 016420 192 QLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTL 271 (390)
Q Consensus 192 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 271 (390)
+|+.|+++++...... . ...++|+.|++++|.+.......+..+++|+.|+++++...... ...+ ...+++|+.|
T Consensus 100 ~L~~L~L~~N~l~~~~-~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l-~~~l~~L~~L 174 (487)
T 3oja_A 100 SIETLHAANNNISRVS-C-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAEL-AASSDTLEHL 174 (487)
T ss_dssp TCCEEECCSSCCCCEE-E-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--GGGG-GGGTTTCCEE
T ss_pred CcCEEECcCCcCCCCC-c-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--hHHH-hhhCCcccEE
Confidence 9999999987643321 1 23478999999999988877777788899999999987543211 1111 1247899999
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeec
Q 016420 272 NLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYA 351 (390)
Q Consensus 272 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l 351 (390)
+++++. ++.... ...+++|+.|+++++. ++..... ...+++|+.|+++++ .++. +......+++|+.|++
T Consensus 175 ~Ls~N~-l~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 175 NLQYNF-IYDVKG---QVVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDL 244 (487)
T ss_dssp ECTTSC-CCEEEC---CCCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEEC
T ss_pred ecCCCc-cccccc---cccCCCCCEEECCCCC-CCCCCHh--HcCCCCccEEEecCC-cCcc--cchhhccCCCCCEEEc
Confidence 999997 664321 1247899999999874 4432111 335789999999998 5764 3333446789999999
Q ss_pred cccCCcCChHHHH
Q 016420 352 NKKNSRVSSTAWE 364 (390)
Q Consensus 352 ~~~c~~l~~~~~~ 364 (390)
++ +.++...+.
T Consensus 245 ~~--N~l~c~~~~ 255 (487)
T 3oja_A 245 RG--NGFHCGTLR 255 (487)
T ss_dssp TT--CCBCHHHHH
T ss_pred CC--CCCcCcchH
Confidence 99 666644443
No 61
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.38 E-value=7.8e-14 Score=122.72 Aligned_cols=247 Identities=14% Similarity=0.033 Sum_probs=147.5
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
++++.|+++++. ++..... ....+++|++|+++++. +...... ....+++|++|++++|.++.-.. ...++|
T Consensus 52 ~~l~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~l~~l~~----~~~~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNK-ITEIKDG-DFKNLKNLHTLILINNK-ISKISPG-AFAPLVKLERLYLSKNQLKELPE----KMPKTL 123 (330)
T ss_dssp TTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSSCCSBCCS----SCCTTC
T ss_pred CCCeEEECCCCc-CCEeChh-hhccCCCCCEEECCCCc-CCeeCHH-HhcCCCCCCEEECCCCcCCccCh----hhcccc
Confidence 678889988653 3321111 12346889999998864 3322111 13357889999998886552110 113689
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccC---cccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEE
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVT---GIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLN 244 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 244 (390)
++|+++++. +...... ....+++|+.|++.++.... ........++|++|++++|.+..... ...++|+.|+
T Consensus 124 ~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~~L~ 198 (330)
T 1xku_A 124 QELRVHENE-ITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELH 198 (330)
T ss_dssp CEEECCSSC-CCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEE
T ss_pred cEEECCCCc-ccccCHh-HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc---cccccCCEEE
Confidence 999998764 4432222 23458899999998875432 12223445789999998887653211 1126888898
Q ss_pred ecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEE
Q 016420 245 VSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLH 324 (390)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 324 (390)
++++...... ......+++|+.|+++++. ++...... ...+++|+.|+++++. ++. +..-...+++|++|+
T Consensus 199 l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 199 LDGNKITKVD----AASLKGLNNLAKLGLSFNS-ISAVDNGS-LANTPHLRELHLNNNK-LVK--VPGGLADHKYIQVVY 269 (330)
T ss_dssp CTTSCCCEEC----TGGGTTCTTCCEEECCSSC-CCEECTTT-GGGSTTCCEEECCSSC-CSS--CCTTTTTCSSCCEEE
T ss_pred CCCCcCCccC----HHHhcCCCCCCEEECCCCc-CceeChhh-ccCCCCCCEEECCCCc-Ccc--CChhhccCCCcCEEE
Confidence 8876532111 1122357889999998886 65433222 2347889999998864 331 111123568899999
Q ss_pred cccccccCchHHHHHHH-----cCCCCceeeccccCCcCC
Q 016420 325 VNRCRNLCDRGLQALRD-----GCKQLLILYANKKNSRVS 359 (390)
Q Consensus 325 l~~~~~i~~~~~~~l~~-----~~~~L~~L~l~~~c~~l~ 359 (390)
++++ .++..+...+.. ..+.|+.+++.+ +.+.
T Consensus 270 l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~--N~~~ 306 (330)
T 1xku_A 270 LHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFS--NPVQ 306 (330)
T ss_dssp CCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCS--SSSC
T ss_pred CCCC-cCCccChhhcCCcccccccccccceEeec--Cccc
Confidence 9887 465433222211 246788888887 4444
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.1e-13 Score=121.37 Aligned_cols=157 Identities=17% Similarity=0.064 Sum_probs=95.3
Q ss_pred CCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHh---------hhcCCCccEEEecCCccccccchhHhh
Q 016420 190 CSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIG---------IVSGGGLEFLNVSGMSSTLNGGGLAAI 260 (390)
Q Consensus 190 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------l~~~~~L~~L~l~~~~~~~~~~~~~~~ 260 (390)
+++|++|+++++....-.......++|++|++++|......+.. +..+++|+.|+++++....-+..
T Consensus 126 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~---- 201 (328)
T 4fcg_A 126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS---- 201 (328)
T ss_dssp GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG----
T ss_pred cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh----
Confidence 44555555554432211111223345666666655433333322 34588999999988754322222
Q ss_pred hhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHH
Q 016420 261 GTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALR 340 (390)
Q Consensus 261 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~ 340 (390)
...+++|++|+++++. ++... .-...+++|+.|++++|...... ......+++|+.|++++|...+. +....
T Consensus 202 -l~~l~~L~~L~L~~N~-l~~l~--~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~--~p~~~ 273 (328)
T 4fcg_A 202 -IANLQNLKSLKIRNSP-LSALG--PAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLLT--LPLDI 273 (328)
T ss_dssp -GGGCTTCCEEEEESSC-CCCCC--GGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCCB--CCTTG
T ss_pred -hcCCCCCCEEEccCCC-CCcCc--hhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchhh--cchhh
Confidence 2358899999999987 65321 12456899999999997643321 11223578999999999843332 22223
Q ss_pred HcCCCCceeeccccCCcCC
Q 016420 341 DGCKQLLILYANKKNSRVS 359 (390)
Q Consensus 341 ~~~~~L~~L~l~~~c~~l~ 359 (390)
..+++|+.|++++ |+..+
T Consensus 274 ~~l~~L~~L~L~~-n~~~~ 291 (328)
T 4fcg_A 274 HRLTQLEKLDLRG-CVNLS 291 (328)
T ss_dssp GGCTTCCEEECTT-CTTCC
T ss_pred hcCCCCCEEeCCC-CCchh
Confidence 4799999999999 76544
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.37 E-value=6.5e-14 Score=121.87 Aligned_cols=209 Identities=15% Similarity=0.069 Sum_probs=127.6
Q ss_pred CCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHH--HHHHHHcCCCCCEEeccccCccCcccccccCCCCC
Q 016420 140 SSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCG--LRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLA 217 (390)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 217 (390)
++|++|+++++.++.... .....+++|++|+++++. ++..+ ...+. .+++|++|+++++............++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNG-LSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSC-CCEEEEEEHHHH-SCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCH-hHhhccccCCEEECCCCc-cCcccCcccccc-cccccCEEECCCCccccChhhcCCCCCCC
Confidence 355555555553332111 112235666666665543 33111 01112 36777777777665332222233468999
Q ss_pred eEEeeccCCChhhH-HhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCce
Q 016420 218 YIDAESCQLGPEGI-IGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEE 296 (390)
Q Consensus 218 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 296 (390)
+|++++|.+..... ..+..+++|++|+++++........ ....+++|++|+++++. +++..+......+++|+.
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTF 179 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT----TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCE
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh----hcccCcCCCEEECCCCc-cccccchhHHhhCcCCCE
Confidence 99999998665443 4577889999999998754322111 22357899999999987 654322233456899999
Q ss_pred eecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCChHH
Q 016420 297 WNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTA 362 (390)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~ 362 (390)
|+++++. ++......+ ..+++|++|+++++ .+++..... ...+++|+.|++++ +.++...
T Consensus 180 L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~--N~l~~~~ 239 (306)
T 2z66_A 180 LDLSQCQ-LEQLSPTAF-NSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSL--NHIMTSK 239 (306)
T ss_dssp EECTTSC-CCEECTTTT-TTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTT--SCCCBCS
T ss_pred EECCCCC-cCCcCHHHh-cCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCC--CCCcccC
Confidence 9999874 443222222 35789999999998 566432222 24689999999999 5666543
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.37 E-value=1.6e-14 Score=136.93 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=65.4
Q ss_pred CCCCCeEEeeccCCChhh--HHhhhcCCCccEEEecCCccccccchhH-------------------h-hhhccCCCccE
Q 016420 213 SPTLAYIDAESCQLGPEG--IIGIVSGGGLEFLNVSGMSSTLNGGGLA-------------------A-IGTGFATRLKT 270 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------------------~-~~~~~~~~L~~ 270 (390)
.++|++|++++|.+.... ...+..+++|++|+++++........+. . .....+++|+.
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 356666666666554332 3445556666666666553211111100 0 01122444555
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceee
Q 016420 271 LNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILY 350 (390)
Q Consensus 271 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~ 350 (390)
|++++|. +..... ..+..+++|+.|++++|. +++..+......+++|+.|++++| .+++.....+ ..+++|+.|+
T Consensus 426 L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~ 500 (570)
T 2z63_A 426 LDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLN 500 (570)
T ss_dssp EECTTSC-CEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEE
T ss_pred EeCcCCc-ccccch-hhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCChhhh-hcccCCCEEe
Confidence 5555443 222111 112335566666665543 221111122234567777777766 4554322222 2567777777
Q ss_pred ccccCCcCCh
Q 016420 351 ANKKNSRVSS 360 (390)
Q Consensus 351 l~~~c~~l~~ 360 (390)
+++ +.++.
T Consensus 501 l~~--n~l~~ 508 (570)
T 2z63_A 501 MAS--NQLKS 508 (570)
T ss_dssp CCS--SCCSC
T ss_pred CCC--CcCCC
Confidence 777 34443
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.37 E-value=1.7e-14 Score=127.03 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=44.3
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
++++.|+++++. +.... ......+++|++|+++++. ++...... ...+++|++|++++|.++.-.. ...++|
T Consensus 54 ~~l~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~----~~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKA-FSPLRKLQKLYISKNHLVEIPP----NLPSSL 125 (332)
T ss_dssp TTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGG-STTCTTCCEEECCSSCCCSCCS----SCCTTC
T ss_pred CCCeEEECCCCc-CCccC-HhHhhCCCCCcEEECCCCc-cCccCHhH-hhCcCCCCEEECCCCcCCccCc----cccccC
Confidence 456666665432 22110 0011234566666666543 32211111 2235666666666654431100 012456
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccC
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCR 202 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 202 (390)
++|+++++. +..... .....+++|+.|++.++.
T Consensus 126 ~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 126 VELRIHDNR-IRKVPK-GVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CEEECCSSC-CCCCCS-GGGSSCSSCCEEECCSCC
T ss_pred CEEECCCCc-cCccCH-hHhCCCccCCEEECCCCc
Confidence 666665543 221110 111235666666665544
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.36 E-value=1.4e-13 Score=133.24 Aligned_cols=136 Identities=15% Similarity=0.003 Sum_probs=72.0
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccch-hH---hhhhccCCCccEEecCCCCCCChHHHHHHH
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGG-LA---AIGTGFATRLKTLNLRMCRNVGDESIVAIA 288 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 288 (390)
.++|+.|++++|.+.......+..+++|+.|+++++....-... +. ......+++|+.|+++++. ++.... ..+
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~-~~~ 556 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPV-EVF 556 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCT-TTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCH-HHc
Confidence 45677777777666554444556666777777766542211000 00 0012345677777777765 442211 123
Q ss_pred hcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 289 KGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
..+++|+.|+++++. ++.... .....+++|+.|+++++ .++......+...+++|+.|++++
T Consensus 557 ~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 557 KDLFELKIIDLGLNN-LNTLPA-SVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred ccccCcceeECCCCC-CCcCCH-hHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence 446777777776643 332111 11234567777777776 465443333332466777777766
No 67
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.35 E-value=7.4e-14 Score=132.00 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=56.3
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhc
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILAST 163 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 163 (390)
+..+++|++|+++++ .++... ......+++|++|+++++. ++. +... .+++|++|++++|.++...+......
T Consensus 72 ~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~ 144 (562)
T 3a79_B 72 ISFLSELRVLRLSHN-RIRSLD-FHVFLFNQDLEYLDVSHNR-LQN--ISCC--PMASLRHLDLSFNDFDVLPVCKEFGN 144 (562)
T ss_dssp TTTCTTCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECTTSC-CCE--ECSC--CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred hccCCCccEEECCCC-CCCcCC-HHHhCCCCCCCEEECCCCc-CCc--cCcc--ccccCCEEECCCCCccccCchHhhcc
Confidence 455677777777754 232211 1112334677777777754 331 1111 46777777777775543222112234
Q ss_pred CcccceeeccCCCCCCHHHHHHHHHcCCCC--CEEeccccC
Q 016420 164 CSTLMRVNLAYCLHISDCGLRALSQGCSQL--TAVRTSSCR 202 (390)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L--~~L~l~~~~ 202 (390)
+++|++|+++++. +....+. .+++| +.|++.++.
T Consensus 145 l~~L~~L~L~~n~-l~~~~~~----~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 145 LTKLTFLGLSAAK-FRQLDLL----PVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTCCEEEEECSB-CCTTTTG----GGTTSCEEEEEEEESS
T ss_pred cCcccEEecCCCc-cccCchh----hhhhceeeEEEeeccc
Confidence 6777777777654 4433222 24444 777776653
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.34 E-value=8.8e-12 Score=108.25 Aligned_cols=190 Identities=16% Similarity=0.115 Sum_probs=120.3
Q ss_pred hCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCc
Q 016420 86 RFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCS 165 (390)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 165 (390)
.+++|++|+++++. +.. +.. ...+++|++|+++++. +.+... ...+++|+.|++++|.++.. .. ...++
T Consensus 39 ~l~~L~~L~l~~~~-i~~--l~~-~~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~n~l~~~--~~-~~~l~ 107 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTT--IEG-VQYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSGNPLKNV--SA-IAGLQ 107 (308)
T ss_dssp HHHTCCEEECTTSC-CCC--CTT-GGGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCSCCCSCC--GG-GTTCT
T ss_pred HcCCcCEEEeeCCC-ccC--chh-hhccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccCCcCCCc--hh-hcCCC
Confidence 35678888888653 222 111 2346888888888764 333221 44578888888888865542 22 33477
Q ss_pred ccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEe
Q 016420 166 TLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNV 245 (390)
Q Consensus 166 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 245 (390)
+|++|+++++. ++.. .. ...+++|++|+++++....... ....++|++|++++|.+..... +..+++|+.|++
T Consensus 108 ~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 180 (308)
T 1h6u_A 108 SIKTLDLTSTQ-ITDV--TP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180 (308)
T ss_dssp TCCEEECTTSC-CCCC--GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEECCCCC-CCCc--hh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEEC
Confidence 88888887765 4331 12 3347888888888775433222 3445788888888887665333 677788888888
Q ss_pred cCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeeccccc
Q 016420 246 SGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCH 303 (390)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 303 (390)
+++.... +.. ...+++|++|+++++. +++.. . ...+++|+.|+++++.
T Consensus 181 ~~n~l~~----~~~--l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 181 DDNKISD----ISP--LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CSSCCCC----CGG--GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEEE
T ss_pred CCCccCc----Chh--hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCCe
Confidence 7764321 111 2357888888888876 65443 2 3557888888888764
No 69
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.34 E-value=1.9e-11 Score=107.73 Aligned_cols=164 Identities=14% Similarity=0.045 Sum_probs=107.9
Q ss_pred HHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhh--cCCCccEEEecCCccc-cccchh--
Q 016420 183 LRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIV--SGGGLEFLNVSGMSST-LNGGGL-- 257 (390)
Q Consensus 183 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~-~~~~~~-- 257 (390)
+..+...+|+|+.|.+.++.......+ ..++|++|.+..+.+..+.+..+. .+|+|++|+|...... ..+.++
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceeccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 445666688888888877633322222 257999999999989888888775 6899999998642211 111112
Q ss_pred -Hhhh-hccCCCccEEecCCCCCCChHHHHHHHh--cCCCCceeecccccCCChhHHHHHh---hcCCCCCeEEcccccc
Q 016420 258 -AAIG-TGFATRLKTLNLRMCRNVGDESIVAIAK--GCPLLEEWNLSLCHEVRFPGWASVG---LNCNNLEKLHVNRCRN 330 (390)
Q Consensus 258 -~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~ 330 (390)
..+. ...+|+|++|.+.+|. +++.....++. .+|+|+.|+|+.+ .+++.+...+. ..+++|+.|++++| .
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~ 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-Y 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-B
T ss_pred HHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-c
Confidence 2111 1247888888888877 77665555554 4677888888664 57777766665 33577888888777 5
Q ss_pred cCchHHHHHHHcCCCCceeeccc
Q 016420 331 LCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 331 i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
+++.++..+.+.+ ...++++.
T Consensus 319 i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 319 LSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp CCHHHHHHHHHHC--CSEEECCS
T ss_pred CCHHHHHHHHHHc--CCEEEecC
Confidence 7777777776544 34466665
No 70
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.34 E-value=6e-13 Score=125.80 Aligned_cols=65 Identities=17% Similarity=0.076 Sum_probs=36.5
Q ss_pred HhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccCh
Q 016420 84 LTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTD 154 (390)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 154 (390)
+..+++|++|+++++. ++. ++.. .+++|++|+++++. +..-........+++|++|+++++.++.
T Consensus 96 ~~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNR-LQN--ISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TTTCTTCCEEECTTSC-CCE--ECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred hCCCCCCCEEECCCCc-CCc--cCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc
Confidence 4556788888887643 331 1111 45778888887764 3321111123346777777777775544
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=7.1e-13 Score=115.42 Aligned_cols=206 Identities=13% Similarity=-0.007 Sum_probs=100.2
Q ss_pred CCCCeEEecccccChHHHHHHH-hcCcccceeeccCCCCCCHH----HHHHHHHcCCCCCEEeccccCccCcc-cccccC
Q 016420 140 SSLTSISLYRCNVTDVGLEILA-STCSTLMRVNLAYCLHISDC----GLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCS 213 (390)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~----~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~ 213 (390)
++|++|++++|.++......+. ..+++|+.|+++++. ++.. ....+. .+++|++|+++++...... ......
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccC
Confidence 4455555555543322211111 234555666655543 2210 111112 3566666666655432211 122334
Q ss_pred CCCCeEEeeccCCChhhHH----hhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHh
Q 016420 214 PTLAYIDAESCQLGPEGII----GIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAK 289 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 289 (390)
++|++|++++|.+...... .+..+++|++|+++++.... ...........+++|++|+++++. +++.....+..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~ 246 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPR 246 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHh
Confidence 5677777776664432111 12355667777776654311 111111112235677777777765 54421111111
Q ss_pred --cCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh
Q 016420 290 --GCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 290 --~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
.+++|+.|+++++. ++.- .. ..+++|+.|+++++ .++.... ...+++|+.|++++ +.+++
T Consensus 247 ~~~~~~L~~L~Ls~N~-l~~l--p~--~~~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~--N~l~~ 308 (310)
T 4glp_A 247 CMWSSALNSLNLSFAG-LEQV--PK--GLPAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDG--NPFLV 308 (310)
T ss_dssp CCCCTTCCCEECCSSC-CCSC--CS--CCCSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSS--TTTSC
T ss_pred ccCcCcCCEEECCCCC-CCch--hh--hhcCCCCEEECCCC-cCCCCch---hhhCCCccEEECcC--CCCCC
Confidence 12677777777653 3311 00 01368888888887 5664211 34678888888888 66654
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.33 E-value=1.2e-12 Score=126.78 Aligned_cols=253 Identities=14% Similarity=0.075 Sum_probs=113.3
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
+++++|+++++. +..... .....+++|++|+++++. +...... ....+++|+.|++++|.++......+ ..+++|
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~-~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPA-ANFTRYSQLTSLDVGFNT-ISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTF-AFCTNL 99 (680)
T ss_dssp TTCSEEECCSSC-CCCCCG-GGGGGGTTCSEEECCSSC-CCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTT-TTCTTC
T ss_pred CCCcEEECCCCC-CCCcCH-HHHhCCCcCcEEECCCCc-cCccCHH-HHhcccCcCEEECCCCccCccChhhh-ccCCCC
Confidence 456666666542 221111 112234666777766643 2221111 12336667777776664432111112 235666
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCeEEeeccCCChhhHHhh--hcCCCccEEE
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQLGPEGIIGI--VSGGGLEFLN 244 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~ 244 (390)
++|+++++. +.......+ ..+++|++|+++++..... .......++|++|++++|.+.......+ ...++|+.|+
T Consensus 100 ~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 100 TELHLMSNS-IQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp SEEECCSSC-CCCCCSCTT-TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CEEECCCCc-cCccChhHc-cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 677666553 221110111 2366666666666543221 1112334566666666666544333332 2345666666
Q ss_pred ecCCccccccc-hhH---------------------hhh-hccCCCccEEecCCCCCCChHHHHHHHhcC--CCCceeec
Q 016420 245 VSGMSSTLNGG-GLA---------------------AIG-TGFATRLKTLNLRMCRNVGDESIVAIAKGC--PLLEEWNL 299 (390)
Q Consensus 245 l~~~~~~~~~~-~~~---------------------~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~~L~~L~l 299 (390)
++++....... .+. .+. ....++|+.|+++++. ++......+. .+ ++|+.|++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~-~l~~~~L~~L~L 255 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFL-GLKWTNLTMLDL 255 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTTTG-GGGGSCCCEEEC
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChhHhh-ccCcCCCCEEEC
Confidence 66543211111 000 000 0012455566655554 3322111111 12 34666666
Q ss_pred ccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 300 SLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 300 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
+++. ++...... ...+++|++|+++++ .++...... ...+++|+.|++++
T Consensus 256 s~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 256 SYNN-LNVVGNDS-FAWLPQLEYFFLEYN-NIQHLFSHS-LHGLFNVRYLNLKR 305 (680)
T ss_dssp TTSC-CCEECTTT-TTTCTTCCEEECCSC-CBSEECTTT-TTTCTTCCEEECTT
T ss_pred CCCC-cCccCccc-ccCcccccEeeCCCC-ccCccChhh-hcCCCCccEEeccc
Confidence 6653 22211111 134567777777766 454322112 23567777777765
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.32 E-value=7.3e-12 Score=114.79 Aligned_cols=225 Identities=14% Similarity=0.036 Sum_probs=155.7
Q ss_pred hhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcC
Q 016420 85 TRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTC 164 (390)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 164 (390)
..+++|++|+++++. ++.. +. ...+++|++|+++++. ++... ...+++|++|++++|.++... ...+
T Consensus 39 ~~l~~L~~L~Ls~n~-l~~~--~~-l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~l 105 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS-ITDM--TG-IEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTNLD----VTPL 105 (457)
T ss_dssp HHHTTCCEEECCSSC-CCCC--TT-GGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSCCC----CTTC
T ss_pred hHcCCCCEEEccCCC-cccC--hh-hcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCceee----cCCC
Confidence 346899999999753 3332 22 3456999999999975 44421 345899999999999776532 3458
Q ss_pred cccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEE
Q 016420 165 STLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLN 244 (390)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 244 (390)
++|++|+++++. ++... ...+++|++|+++++.... .. ....++|++|++++|...... .+..+++|+.|+
T Consensus 106 ~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CcCCEEECCCCc-CCeec----CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 999999998875 44321 3458999999999876433 22 334578999999998533322 466788999999
Q ss_pred ecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEE
Q 016420 245 VSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLH 324 (390)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 324 (390)
++++.... + ....+++|+.|+++++. ++... ...+++|+.|+++++. ++... ...+++|+.|+
T Consensus 177 ls~n~l~~----l---~l~~l~~L~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N~-l~~ip----~~~l~~L~~L~ 239 (457)
T 3bz5_A 177 CSFNKITE----L---DVSQNKLLNRLNCDTNN-ITKLD----LNQNIQLTFLDCSSNK-LTEID----VTPLTQLTYFD 239 (457)
T ss_dssp CCSSCCCC----C---CCTTCTTCCEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCCC----CTTCTTCSEEE
T ss_pred CCCCccce----e---ccccCCCCCEEECcCCc-CCeec----cccCCCCCEEECcCCc-ccccC----ccccCCCCEEE
Confidence 98875322 1 13458899999999987 66542 3458999999999874 44322 34678999999
Q ss_pred cccccccCchHHHHHHHcCCCCceeeccc
Q 016420 325 VNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 325 l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
++++ .++... ...+++|+.|++++
T Consensus 240 l~~N-~l~~~~----~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 240 CSVN-PLTELD----VSTLSKLTTLHCIQ 263 (457)
T ss_dssp CCSS-CCSCCC----CTTCTTCCEEECTT
T ss_pred eeCC-cCCCcC----HHHCCCCCEEeccC
Confidence 9998 576543 23456665554443
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.32 E-value=2.9e-13 Score=118.00 Aligned_cols=208 Identities=18% Similarity=0.102 Sum_probs=124.0
Q ss_pred hCCCCCeEEecccccChHHHHHH-HhcCcccceeeccCCCCCCHH--HHHHHHHc-CCCCCEEeccccCccCcc-ccccc
Q 016420 138 GCSSLTSISLYRCNVTDVGLEIL-ASTCSTLMRVNLAYCLHISDC--GLRALSQG-CSQLTAVRTSSCRTVTGI-GFNGC 212 (390)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~l-~~~~~~L~~L~l~~~~~~~~~--~l~~l~~~-~~~L~~L~l~~~~~~~~~-~~~~~ 212 (390)
.+++|++|++++|.++......+ ...+++|++|+++++. ++.. .+..+... +++|++|+++++...... .....
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 46888888888886654322222 2447788888887764 3332 22222211 378888888877643322 22344
Q ss_pred CCCCCeEEeeccCCChh--hHHhh--hcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHH
Q 016420 213 SPTLAYIDAESCQLGPE--GIIGI--VSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIA 288 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 288 (390)
.++|++|++++|.+... .+..+ ..+++|++|+++++.... ...+.......+++|+.|+++++. ++........
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 249 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSC 249 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhh
Confidence 57888888888876543 22333 667888888888764321 112221122346788888888876 5543211122
Q ss_pred hcCCCCceeecccccCCChhHHHHHhhc-CCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh
Q 016420 289 KGCPLLEEWNLSLCHEVRFPGWASVGLN-CNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
..+++|+.|+++++. ++. +... .++|++|+++++ .+++. .. ...+++|+.|++++ +.+++
T Consensus 250 ~~l~~L~~L~Ls~N~-l~~-----ip~~~~~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~--N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTG-LKQ-----VPKGLPAKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKG--NPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTSC-CSS-----CCSSCCSEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTT--CTTTC
T ss_pred hhcCCCCEEECCCCc-cCh-----hhhhccCCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccC--CCCCC
Confidence 346788888888764 331 1111 168888888887 56654 22 34678888888888 66654
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.31 E-value=7.7e-13 Score=121.08 Aligned_cols=223 Identities=13% Similarity=0.001 Sum_probs=151.6
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQL 193 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 193 (390)
++++.|+++++. +....... +..+++|+.|+|++|.++......+ ..+++|++|+++++. ++.... .....+++|
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDNR-LTTIPN-GAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTT-TSSCSSCCEEECCSSCCCEECGGGG-TTCSSCCEEECCSSC-CSSCCT-TTSCSCSSC
T ss_pred CCCcEEEccCCc-CCeeCHHH-hhCCCCCCEEECCCCcCCccChhhc-cCCccCCEEECCCCc-CCeeCH-hHhhccccC
Confidence 689999999875 44322222 3458999999999996654332233 348999999998874 432111 112358999
Q ss_pred CEEeccccCccCcc-cccccCCCCCeEEeeccC-CChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEE
Q 016420 194 TAVRTSSCRTVTGI-GFNGCSPTLAYIDAESCQ-LGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTL 271 (390)
Q Consensus 194 ~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 271 (390)
+.|+++++...... ......++|++|+++++. +.......+..+++|+.|+++++....-+ ....+++|+.|
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L 212 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDEL 212 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEE
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc------ccCCCcccCEE
Confidence 99999987643221 223456899999999855 44444445778899999999987543221 12357899999
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeec
Q 016420 272 NLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYA 351 (390)
Q Consensus 272 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l 351 (390)
+++++. ++...... +..+++|+.|+++++. ++...... ...+++|+.|+++++ .++..... ....+++|+.|++
T Consensus 213 ~Ls~N~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L 286 (440)
T 3zyj_A 213 DLSGNH-LSAIRPGS-FQGLMHLQKLWMIQSQ-IQVIERNA-FDNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHL 286 (440)
T ss_dssp ECTTSC-CCEECTTT-TTTCTTCCEEECTTCC-CCEECTTS-STTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEEC
T ss_pred ECCCCc-cCccChhh-hccCccCCEEECCCCc-eeEEChhh-hcCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEc
Confidence 999987 66543222 3458999999999864 44332222 235789999999998 57643322 2346899999999
Q ss_pred cc
Q 016420 352 NK 353 (390)
Q Consensus 352 ~~ 353 (390)
++
T Consensus 287 ~~ 288 (440)
T 3zyj_A 287 HH 288 (440)
T ss_dssp CS
T ss_pred CC
Confidence 88
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.31 E-value=1.3e-11 Score=116.67 Aligned_cols=228 Identities=17% Similarity=0.070 Sum_probs=123.4
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
++|+.|+++++. ++. +...+++|++|+++++. ++. + ...+++|++|++++|.++.- ...+++|
T Consensus 61 ~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N~-l~~--l---p~~l~~L~~L~Ls~N~l~~l-----~~~l~~L 123 (622)
T 3g06_A 61 AHITTLVIPDNN-LTS-----LPALPPELRTLEVSGNQ-LTS--L---PVLPPGLLELSIFSNPLTHL-----PALPSGL 123 (622)
T ss_dssp TTCSEEEECSCC-CSC-----CCCCCTTCCEEEECSCC-CSC--C---CCCCTTCCEEEECSCCCCCC-----CCCCTTC
T ss_pred CCCcEEEecCCC-CCC-----CCCcCCCCCEEEcCCCc-CCc--C---CCCCCCCCEEECcCCcCCCC-----CCCCCCc
Confidence 456666666542 221 11134566666666653 221 1 11356666666666644321 1124555
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCccc-----------------ccccCCCCCeEEeeccCCChhh
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIG-----------------FNGCSPTLAYIDAESCQLGPEG 230 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-----------------~~~~~~~L~~L~l~~~~~~~~~ 230 (390)
+.|+++++. ++. +...+++|++|+++++....-.. +...+++|+.|++++|.+....
T Consensus 124 ~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~ 197 (622)
T 3g06_A 124 CKLWIFGNQ-LTS-----LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP 197 (622)
T ss_dssp CEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred CEEECCCCC-CCc-----CCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCC
Confidence 556555443 221 01123555555555543211000 1122355666666665544211
Q ss_pred HHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHH
Q 016420 231 IIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGW 310 (390)
Q Consensus 231 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 310 (390)
...++|+.|++.++.... +. ...++|+.|+++++. ++... ..+++|+.|+++++. ++.-
T Consensus 198 ----~~~~~L~~L~L~~N~l~~----l~----~~~~~L~~L~Ls~N~-L~~lp-----~~l~~L~~L~Ls~N~-L~~l-- 256 (622)
T 3g06_A 198 ----TLPSELYKLWAYNNRLTS----LP----ALPSGLKELIVSGNR-LTSLP-----VLPSELKELMVSGNR-LTSL-- 256 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSS----CC----CCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSC-CSCC--
T ss_pred ----CccchhhEEECcCCcccc----cC----CCCCCCCEEEccCCc-cCcCC-----CCCCcCcEEECCCCC-CCcC--
Confidence 113456666665543221 11 124788999998886 65422 457889999999864 4321
Q ss_pred HHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCChHHHHHHH
Q 016420 311 ASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFK 367 (390)
Q Consensus 311 ~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~~l~ 367 (390)
...+++|+.|++++| .++. +......+++|+.|++++ +.++......+.
T Consensus 257 ---p~~~~~L~~L~Ls~N-~L~~--lp~~l~~l~~L~~L~L~~--N~l~~~~~~~l~ 305 (622)
T 3g06_A 257 ---PMLPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEG--NPLSERTLQALR 305 (622)
T ss_dssp ---CCCCTTCCEEECCSS-CCCS--CCGGGGGSCTTCEEECCS--CCCCHHHHHHHH
T ss_pred ---CcccccCcEEeCCCC-CCCc--CCHHHhhccccCEEEecC--CCCCCcCHHHHH
Confidence 114689999999998 5763 333345789999999999 778876666554
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.30 E-value=6.2e-14 Score=122.21 Aligned_cols=202 Identities=15% Similarity=0.030 Sum_probs=132.3
Q ss_pred cCcccceeeccCCCCCCHHHHHHH-HHcCCCCCEEeccccCccCccccc-cc----CCCCCeEEeeccCCChhhHHhhhc
Q 016420 163 TCSTLMRVNLAYCLHISDCGLRAL-SQGCSQLTAVRTSSCRTVTGIGFN-GC----SPTLAYIDAESCQLGPEGIIGIVS 236 (390)
Q Consensus 163 ~~~~L~~L~l~~~~~~~~~~l~~l-~~~~~~L~~L~l~~~~~~~~~~~~-~~----~~~L~~L~l~~~~~~~~~~~~l~~ 236 (390)
.+++|++|+++++. ++......+ ...+++|++|+++++......... .. .++|++|++++|.+.......+..
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 37899999998875 432211111 245899999999987643332221 22 389999999999988777778888
Q ss_pred CCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCCh--HHHHHHHhcCCCCceeecccccCCChhHHHHHh
Q 016420 237 GGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGD--ESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVG 314 (390)
Q Consensus 237 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (390)
+++|++|+++++...........+....+++|++|+++++. ++. .....+...+++|+.|+++++. ++........
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 249 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSC 249 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhh
Confidence 99999999998753211111222222568999999999997 773 2334556678999999999864 4432211112
Q ss_pred hcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCChHHHHHHHhhcCceeEee
Q 016420 315 LNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWELFKMYRGNVDIKD 377 (390)
Q Consensus 315 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~~l~~~~~~l~~~~ 377 (390)
..+++|++|+++++ .++. +.... .++|+.|++++ ++++.. .. ....++++.-.
T Consensus 250 ~~l~~L~~L~Ls~N-~l~~--ip~~~--~~~L~~L~Ls~--N~l~~~--p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 250 DWPSQLNSLNLSFT-GLKQ--VPKGL--PAKLSVLDLSY--NRLDRN--PS-PDELPQVGNLS 302 (312)
T ss_dssp CCCTTCCEEECTTS-CCSS--CCSSC--CSEEEEEECCS--SCCCSC--CC-TTTSCEEEEEE
T ss_pred hhcCCCCEEECCCC-ccCh--hhhhc--cCCceEEECCC--CCCCCC--hh-HhhCCCCCEEe
Confidence 23589999999998 5662 22111 17899999999 677653 11 23445555443
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.30 E-value=1e-12 Score=120.77 Aligned_cols=225 Identities=14% Similarity=-0.007 Sum_probs=152.3
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQL 193 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 193 (390)
+++++|+++++. +....... +..+++|+.|++++|.++......+ ..+++|+.|+++++. ++.... .....+++|
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDNW-LTVIPS-GAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC-CSBCCT-TTSSSCTTC
T ss_pred CCccEEECcCCc-CceECHHH-cCCCCCCCEEECCCCccCCcChhhc-cCcccCCEEECCCCc-CCccCh-hhhcccCCC
Confidence 689999999875 44322222 3458999999999996654332233 348999999998875 432111 112358999
Q ss_pred CEEeccccCccCc-ccccccCCCCCeEEeeccC-CChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEE
Q 016420 194 TAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQ-LGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTL 271 (390)
Q Consensus 194 ~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 271 (390)
++|+++++..... .......++|++|+++++. +.......+..+++|+.|+++++.....+ ....+++|+.|
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L 223 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEEL 223 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEE
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc------cccccccccEE
Confidence 9999998764322 1223456899999999854 44444445778899999999987543221 12357899999
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeec
Q 016420 272 NLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYA 351 (390)
Q Consensus 272 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l 351 (390)
+++++. ++...... +..+++|+.|+++++. ++...... ...+++|+.|+++++ .++.... .....+++|+.|++
T Consensus 224 ~Ls~N~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 224 EMSGNH-FPEIRPGS-FHGLSSLKKLWVMNSQ-VSLIERNA-FDGLASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHL 297 (452)
T ss_dssp ECTTSC-CSEECGGG-GTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEEC
T ss_pred ECcCCc-CcccCccc-ccCccCCCEEEeCCCc-CceECHHH-hcCCCCCCEEECCCC-cCCccCh-HHhccccCCCEEEc
Confidence 999987 66543222 3458999999999864 44322222 235789999999998 5764322 22346899999999
Q ss_pred cccCC
Q 016420 352 NKKNS 356 (390)
Q Consensus 352 ~~~c~ 356 (390)
++ ++
T Consensus 298 ~~-Np 301 (452)
T 3zyi_A 298 HH-NP 301 (452)
T ss_dssp CS-SC
T ss_pred cC-CC
Confidence 98 44
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.26 E-value=1.7e-13 Score=135.58 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=37.5
Q ss_pred hhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHH-HHHHhCCCCCeEEecccccChHHHHHHHhc
Q 016420 85 TRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLS-VIATGCSSLTSISLYRCNVTDVGLEILAST 163 (390)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 163 (390)
..+++|+.|+|+++. +.... +.....+++|++|+++++. +.+.... .....+++|++|++++|.++..........
T Consensus 70 ~~L~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 70 RNLPNLRILDLGSSK-IYFLH-PDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp SSCTTCCEEECTTCC-CCEEC-TTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred cCCCCCCEEECCCCc-CcccC-HhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 445555666655432 22110 1112234556666665543 2211111 012235566666666654433222112233
Q ss_pred CcccceeeccCC
Q 016420 164 CSTLMRVNLAYC 175 (390)
Q Consensus 164 ~~~L~~L~l~~~ 175 (390)
+++|+.|+++++
T Consensus 147 L~~L~~L~Ls~N 158 (844)
T 3j0a_A 147 LNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCEEEEESS
T ss_pred CCCCCEEECCCC
Confidence 566666666554
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.25 E-value=1.1e-12 Score=129.70 Aligned_cols=106 Identities=10% Similarity=-0.104 Sum_probs=52.9
Q ss_pred CCCCEEeccccCccCc-ccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCcc
Q 016420 191 SQLTAVRTSSCRTVTG-IGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLK 269 (390)
Q Consensus 191 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 269 (390)
++|+.|+++++..... .......++|+.|++++|.+.......+..+++|++|+++++..... .......+++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL----YSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC----CSCSCSSCTTCC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc----CHHHhcCCCCCC
Confidence 4566666655432211 11223445677777777766655555566666777777766532111 001122355666
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCceeecccc
Q 016420 270 TLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLC 302 (390)
Q Consensus 270 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 302 (390)
.|+++++. ++..... .+..+++|+.|+++++
T Consensus 342 ~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 342 YIDLQKNH-IAIIQDQ-TFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EEECCSCC-CCCCCSS-CSCSCCCCCEEEEETC
T ss_pred EEECCCCC-CCccChh-hhcCCCCCCEEECCCC
Confidence 66666654 3322111 1233556666666554
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.24 E-value=1.4e-12 Score=114.81 Aligned_cols=246 Identities=15% Similarity=0.108 Sum_probs=147.7
Q ss_pred CccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccc
Q 016420 89 HLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLM 168 (390)
Q Consensus 89 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 168 (390)
+++.++++++. +.. ++ ....+++++|+++++. +...... ....+++|++|++++|.++......+ ..+++|+
T Consensus 34 ~l~~l~~~~~~-l~~--ip--~~~~~~l~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKA--VP--KEISPDTTLLDLQNND-ISELRKD-DFKGLQHLYALVLVNNKISKIHEKAF-SPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSC-CSS--CC--SCCCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECGGGS-TTCTTCC
T ss_pred cCCEEECCCCC-ccc--cC--CCCCCCCeEEECCCCc-CCccCHh-HhhCCCCCcEEECCCCccCccCHhHh-hCcCCCC
Confidence 57888887542 221 10 0123789999999875 4432111 23458999999999996664322233 3489999
Q ss_pred eeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc-cccccCCCCCeEEeeccCCCh--hhHHhhhcCCCccEEEe
Q 016420 169 RVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCSPTLAYIDAESCQLGP--EGIIGIVSGGGLEFLNV 245 (390)
Q Consensus 169 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l 245 (390)
+|+++++. ++.-.. ...++|++|++.++...... ......++|++|++++|.+.. .....+... +|+.|++
T Consensus 106 ~L~L~~n~-l~~l~~----~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 106 KLYISKNH-LVEIPP----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp EEECCSSC-CCSCCS----SCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred EEECCCCc-CCccCc----cccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 99998874 332110 11378999999987643322 223456899999999998754 222333334 7888888
Q ss_pred cCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEc
Q 016420 246 SGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHV 325 (390)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 325 (390)
+++....- .....++|++|+++++. ++......+ ..+++|+.|+++++. ++...... ...+++|++|++
T Consensus 180 ~~n~l~~l-------~~~~~~~L~~L~l~~n~-i~~~~~~~l-~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L 248 (332)
T 2ft3_A 180 SEAKLTGI-------PKDLPETLNELHLDHNK-IQAIELEDL-LRYSKLYRLGLGHNQ-IRMIENGS-LSFLPTLRELHL 248 (332)
T ss_dssp CSSBCSSC-------CSSSCSSCSCCBCCSSC-CCCCCTTSS-TTCTTCSCCBCCSSC-CCCCCTTG-GGGCTTCCEEEC
T ss_pred cCCCCCcc-------CccccCCCCEEECCCCc-CCccCHHHh-cCCCCCCEEECCCCc-CCcCChhH-hhCCCCCCEEEC
Confidence 77643211 11123678888888776 544322222 346788888888753 33221111 234678888888
Q ss_pred ccccccCchHHHHHHHcCCCCceeeccccCCcCChHHHH
Q 016420 326 NRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSSTAWE 364 (390)
Q Consensus 326 ~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~~~~ 364 (390)
+++ .++. +......+++|+.|++++ +.++.....
T Consensus 249 ~~N-~l~~--lp~~l~~l~~L~~L~l~~--N~l~~~~~~ 282 (332)
T 2ft3_A 249 DNN-KLSR--VPAGLPDLKLLQVVYLHT--NNITKVGVN 282 (332)
T ss_dssp CSS-CCCB--CCTTGGGCTTCCEEECCS--SCCCBCCTT
T ss_pred CCC-cCee--cChhhhcCccCCEEECCC--CCCCccChh
Confidence 877 4552 222234678888888887 566654333
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.23 E-value=1.7e-12 Score=112.96 Aligned_cols=210 Identities=16% Similarity=0.052 Sum_probs=139.1
Q ss_pred CCCCeEEecccccChHHHHHHHhc--CcccceeeccCCCCCCHHHHHHHH-HcCCCCCEEeccccCccCccc-----ccc
Q 016420 140 SSLTSISLYRCNVTDVGLEILAST--CSTLMRVNLAYCLHISDCGLRALS-QGCSQLTAVRTSSCRTVTGIG-----FNG 211 (390)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l~~~--~~~L~~L~l~~~~~~~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~-----~~~ 211 (390)
..++.+.+.++.+++..+..+... +++|++|+++++. +.......+. ..+++|+.|+++++....... ...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 457888888877776665544332 4679999998875 3322212221 458999999999876443211 112
Q ss_pred cCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhH-hhhhccCCCccEEecCCCCCCCh--HHHHHHH
Q 016420 212 CSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLA-AIGTGFATRLKTLNLRMCRNVGD--ESIVAIA 288 (390)
Q Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~ 288 (390)
..++|++|++++|.+.......+..+++|++|+++++... ...++. ......+++|++|++++|. ++. .....+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL-GERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC-HHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc-cchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence 4689999999999987776677788999999999987532 111121 1112357899999999997 763 2233455
Q ss_pred hcCCCCceeecccccCCChhHHHHHhh--cCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh
Q 016420 289 KGCPLLEEWNLSLCHEVRFPGWASVGL--NCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
..+++|+.|+++++. +++.....+.. ..++|++|+++++ .++. +... ..++|+.|++++ ++++.
T Consensus 221 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~--lp~~--~~~~L~~L~Ls~--N~l~~ 286 (310)
T 4glp_A 221 AAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQ--VPKG--LPAKLRVLDLSS--NRLNR 286 (310)
T ss_dssp HHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCS--CCSC--CCSCCSCEECCS--CCCCS
T ss_pred hcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCc--hhhh--hcCCCCEEECCC--CcCCC
Confidence 678999999999874 44321111111 1379999999998 5663 2211 137999999998 66764
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=1.1e-10 Score=94.37 Aligned_cols=130 Identities=16% Similarity=0.102 Sum_probs=77.4
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
++|++|++++|.+.. +..+..+++|++|+++++.... .... ....+++|++|+++++. +++.....+ ..+++
T Consensus 66 ~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~--~~~~--~l~~l~~L~~L~Ls~n~-i~~~~~~~l-~~l~~ 137 (197)
T 4ezg_A 66 HNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTS--DKIP--NLSGLTSLTLLDISHSA-HDDSILTKI-NTLPK 137 (197)
T ss_dssp TTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBG--GGSC--CCTTCTTCCEEECCSSB-CBGGGHHHH-TTCSS
T ss_pred CCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCc--ccCh--hhcCCCCCCEEEecCCc-cCcHhHHHH-hhCCC
Confidence 455555555553322 1244455566666665543211 0111 12247788888888887 776555544 35888
Q ss_pred CceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCCh
Q 016420 294 LEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSS 360 (390)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~ 360 (390)
|+.|++++|..+++.. ....+++|+.|++++| .+++.. ....+++|+.|++++ +++++
T Consensus 138 L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L~l~~--N~i~~ 195 (197)
T 4ezg_A 138 VNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQLYAFS--QTIGG 195 (197)
T ss_dssp CCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCEEEECB--C----
T ss_pred CCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcChH---HhccCCCCCEEEeeC--cccCC
Confidence 9999888875355432 2345789999999988 576532 334689999999988 66543
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.21 E-value=2.5e-12 Score=110.01 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=51.3
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQL 193 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 193 (390)
++|++|+++++. ++..... ....+++|++|++++|.++......+ ..+++|+.|+++++. +.......+ ..+++|
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNP-IQSLALGAF-SGLSSL 102 (276)
T ss_dssp TTCCEEECTTCC-CCEECTT-TTTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCC-CCEECTTTT-TTCTTC
T ss_pred CCccEEECCCCc-ccccCHh-HhccccCCcEEECCCCcCCccCHHHc-cCCcCCCEEECCCCc-cCccChhhh-cCCccc
Confidence 467777777754 3322211 12346777777777775443221112 235667777776553 222111111 235566
Q ss_pred CEEeccccCccCccc-ccccCCCCCeEEeeccCCC
Q 016420 194 TAVRTSSCRTVTGIG-FNGCSPTLAYIDAESCQLG 227 (390)
Q Consensus 194 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 227 (390)
+.|++.++....... .....++|++|++++|.+.
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccc
Confidence 666665543222111 1223345555555555443
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.18 E-value=1.8e-11 Score=104.28 Aligned_cols=105 Identities=12% Similarity=0.003 Sum_probs=41.6
Q ss_pred CCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc-cccccCCCCC
Q 016420 139 CSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCSPTLA 217 (390)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~ 217 (390)
+++|+.|++++|.+++. .. ...+++|++|+++++. ++.... .....+++|+.|++.++...... ......++|+
T Consensus 62 l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI--SA-LKELTNLTYLILTGNQ-LQSLPN-GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp CTTCCEEECTTSCCCCC--GG-GTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEECCCCCCCCc--hh-hcCCCCCCEEECCCCc-cCccCh-hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 45555555555543321 11 1224555555555442 221100 11112455555555544322111 1122234555
Q ss_pred eEEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 218 YIDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 218 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
+|++++|.+.......+..+++|+.|+++++
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCC
Confidence 5555555444322222333444444444443
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.15 E-value=2.7e-10 Score=97.93 Aligned_cols=166 Identities=17% Similarity=0.067 Sum_probs=102.2
Q ss_pred CCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCe
Q 016420 139 CSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAY 218 (390)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 218 (390)
+++|+.|+++++.+... .. ...+++|+.|+++++. ++... . ...+++|+.|+++++....... ....++|++
T Consensus 45 l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIK--P-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred cCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCCc-cCCCc--c-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 57889999988855432 12 3447888999888765 43321 1 3458888888888765333222 344567888
Q ss_pred EEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceee
Q 016420 219 IDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWN 298 (390)
Q Consensus 219 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 298 (390)
|++++|.+... ..+..+++|+.|+++++.... +. ....+++|++|+++++. +++... ...+++|+.|+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~----~~--~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~ 184 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITD----IT--VLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLY 184 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC----CG--GGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEE
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc----ch--hhccCCCCCEEEccCCc-cccchh---hcCCCccCEEE
Confidence 88888876553 456667777777777664321 11 12346777777777775 554322 34567777777
Q ss_pred cccccCCChhHHHHHhhcCCCCCeEEcccc
Q 016420 299 LSLCHEVRFPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 299 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
++++. +++.. . ...+++|+.|+++++
T Consensus 185 L~~N~-i~~l~--~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 185 LSKNH-ISDLR--A-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCSSC-CCBCG--G-GTTCTTCSEEEEEEE
T ss_pred CCCCc-CCCCh--h-hccCCCCCEEECcCC
Confidence 77653 43321 1 234667777777766
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.15 E-value=1.5e-10 Score=93.53 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=47.2
Q ss_pred CCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccC-cccccccCCCCC
Q 016420 139 CSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVT-GIGFNGCSPTLA 217 (390)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~ 217 (390)
+++|++|+++++.+++-. . ...+++|++|+++++. +... ..+ ..+++|++|+++++.... .......+++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n~-~~~~--~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--G-IEYAHNIKDLTINNIH-ATNY--NPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--T-GGGCTTCSEEEEESCC-CSCC--GGG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred cCCccEEeccCCCccChH--H-HhcCCCCCEEEccCCC-CCcc--hhh-hcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 345556666555443211 1 2235555555555542 2211 111 125555555555543221 111122335566
Q ss_pred eEEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 218 YIDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 218 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
+|++++|.+.+..+..+..+++|+.|+++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 6666666555544555555555555555544
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=5.2e-12 Score=108.01 Aligned_cols=201 Identities=17% Similarity=0.026 Sum_probs=118.2
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
+++++|+++++. ++..... ....+++|++|+++++. +...... ....+++|++|++++|.++......+ ..+++|
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSY-SFFSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAF-SGLSSL 102 (276)
T ss_dssp TTCCEEECTTCC-CCEECTT-TTTTCTTCSEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCEECTTTT-TTCTTC
T ss_pred CCccEEECCCCc-ccccCHh-HhccccCCcEEECCCCc-CCccCHH-HccCCcCCCEEECCCCccCccChhhh-cCCccc
Confidence 479999998753 3332111 12346899999999874 4432211 23457999999999996654332223 348899
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccC--cccccccCCCCCeEEeeccCCChhhHHhh---hcCCCcc-
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVT--GIGFNGCSPTLAYIDAESCQLGPEGIIGI---VSGGGLE- 241 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~- 241 (390)
+.|++.++. +....... ...+++|++|+++++.... ........++|++|++++|.+.......+ ..++.+.
T Consensus 103 ~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 103 QKLVAVETN-LASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred cEEECCCCC-ccccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 999998765 33211111 2348999999999876433 12334456899999999998765443333 3333333
Q ss_pred EEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccc
Q 016420 242 FLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLC 302 (390)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 302 (390)
.|+++++.....+... . ...+|+.|+++++. ++.... .++..+++|+.|+++++
T Consensus 181 ~L~ls~n~l~~~~~~~----~-~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGA----F-KEIRLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp EEECCSSCCCEECTTS----S-CSCCEEEEECCSSC-CSCCCT-TTTTTCCSCCEEECCSS
T ss_pred eeecCCCcccccCccc----c-CCCcccEEECCCCc-eeecCH-hHhcccccccEEEccCC
Confidence 6777665432111111 1 13367777777765 443211 12234566666666654
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.12 E-value=7.3e-11 Score=100.55 Aligned_cols=175 Identities=13% Similarity=-0.009 Sum_probs=105.4
Q ss_pred CCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc-cccccCCCCC
Q 016420 139 CSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCSPTLA 217 (390)
Q Consensus 139 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~ 217 (390)
+++|+.|++.++.++.. ..+ ..+++|+.|+++++. +... .. ...+++|++|+++++...... ......++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l-~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGI-QYLPNVRYLALGGNK-LHDI--SA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTG-GGCTTCCEEECTTSC-CCCC--GG-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCCCcccc--ccc-ccCCCCcEEECCCCC-CCCc--hh-hcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 58899999988855432 122 348899999998775 4331 22 234888888888887533221 1234457888
Q ss_pred eEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCcee
Q 016420 218 YIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEW 297 (390)
Q Consensus 218 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 297 (390)
+|++++|.+.......+..+++|++|+++++.....+. -....+++|+.|+++++. ++.... ..+..+++|+.|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L 186 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK----GVFDKLTNLTELDLSYNQ-LQSLPE-GVFDKLTQLKDL 186 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEE
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH----HHhccCccCCEEECCCCC-cCccCH-HHhcCCccCCEE
Confidence 88888888765555556677788888887764321111 112346778888887775 543221 122346777777
Q ss_pred ecccccCCChhHHHHHhhcCCCCCeEEcccc
Q 016420 298 NLSLCHEVRFPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
+++++. ++.... .....+++|+.|+++++
T Consensus 187 ~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 187 RLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp ECCSSC-CSCCCT-TTTTTCTTCCEEECCSS
T ss_pred ECCCCc-CCccCH-HHHhCCcCCCEEEccCC
Confidence 777653 322111 11234567777777766
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.08 E-value=8.2e-10 Score=94.95 Aligned_cols=167 Identities=14% Similarity=0.026 Sum_probs=119.0
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCC
Q 016420 113 GSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQ 192 (390)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 192 (390)
+++|++|+++++. +... .. ...+++|++|++++|.+++... ...+++|+.|+++++. ++. +.. ...+++
T Consensus 45 l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENK-VKD--LSS-LKDLKK 113 (291)
T ss_dssp HHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCC--GGG-GTTCTT
T ss_pred cCcccEEEccCCC-cccC--hh-HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCc-CCC--Chh-hccCCC
Confidence 3789999999875 3322 12 3458999999999996654322 4558999999998875 443 222 345899
Q ss_pred CCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEe
Q 016420 193 LTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLN 272 (390)
Q Consensus 193 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 272 (390)
|++|+++++..... ......++|+.|++++|.+... ..+..+++|+.|+++++..... .. ...+++|++|+
T Consensus 114 L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~----~~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 114 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI----VP--LAGLTKLQNLY 184 (291)
T ss_dssp CCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GG--GTTCTTCCEEE
T ss_pred CCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc----hh--hcCCCccCEEE
Confidence 99999998864433 2334557899999999987764 5678889999999988753221 11 34588999999
Q ss_pred cCCCCCCChHHHHHHHhcCCCCceeeccccc
Q 016420 273 LRMCRNVGDESIVAIAKGCPLLEEWNLSLCH 303 (390)
Q Consensus 273 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 303 (390)
++++. +++.. . ...+++|+.|+++++.
T Consensus 185 L~~N~-i~~l~--~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 185 LSKNH-ISDLR--A-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCSSC-CCBCG--G-GTTCTTCSEEEEEEEE
T ss_pred CCCCc-CCCCh--h-hccCCCCCEEECcCCc
Confidence 99987 76642 2 3568999999998864
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.08 E-value=4e-11 Score=102.13 Aligned_cols=59 Identities=8% Similarity=-0.039 Sum_probs=26.6
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYC 175 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 175 (390)
+++++|+++++. +..... ..+..+++|++|+++++.++.... .....+++|++|+++++
T Consensus 37 ~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPS-KAFHRLTKLRLLYLNDNKLQTLPA-GIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTCSEEECCSSC-CSCCCT-TSSSSCTTCCEEECCSSCCSCCCT-TTTSSCTTCCEEECCSS
T ss_pred CCCCEEECcCCC-CCeeCH-HHhcCCCCCCEEECCCCccCeeCh-hhhcCCCCCCEEECCCC
Confidence 456677766653 221110 012235666666666654432110 11123455555555544
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.08 E-value=5.5e-10 Score=105.51 Aligned_cols=171 Identities=17% Similarity=0.070 Sum_probs=114.4
Q ss_pred hCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCC
Q 016420 138 GCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLA 217 (390)
Q Consensus 138 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 217 (390)
.+++|+.|+++++.+... .. ...+++|+.|+++++. +.... . ...+++|+.|+++++...... ....+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l--~~-l~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIK--P-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC--TT-GGGCTTCCEEECTTSC-CCCCG--G-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred cCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEeeCCC-CCCCh--h-hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 368899999998855432 12 3458999999998875 33321 1 345899999999887643322 334457899
Q ss_pred eEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCcee
Q 016420 218 YIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEW 297 (390)
Q Consensus 218 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 297 (390)
.|++++|.+.. +..+..+++|+.|+|+++.... +. ....+++|+.|+|++|. +++... +..+++|+.|
T Consensus 113 ~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~----l~--~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L 180 (605)
T 1m9s_A 113 SLSLEHNGISD--INGLVHLPQLESLYLGNNKITD----IT--VLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNL 180 (605)
T ss_dssp EEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCC----CG--GGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCEE
T ss_pred EEEecCCCCCC--CccccCCCccCEEECCCCccCC----ch--hhcccCCCCEEECcCCc-CCCchh---hccCCCCCEE
Confidence 99999888765 3457778888888888764321 11 23357888888888886 654332 4557888888
Q ss_pred ecccccCCChhHHHHHhhcCCCCCeEEcccccccCc
Q 016420 298 NLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCD 333 (390)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~ 333 (390)
+|++|. +++. .. ...+++|+.|++++| .+++
T Consensus 181 ~Ls~N~-i~~l--~~-l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 181 YLSKNH-ISDL--RA-LAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp ECCSSC-CCBC--GG-GTTCTTCSEEECCSE-EEEC
T ss_pred ECcCCC-CCCC--hH-HccCCCCCEEEccCC-cCcC
Confidence 888863 4432 12 335788888888887 3443
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.07 E-value=6.9e-11 Score=100.62 Aligned_cols=106 Identities=12% Similarity=0.039 Sum_probs=55.4
Q ss_pred CCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCe
Q 016420 140 SSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAY 218 (390)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~ 218 (390)
++|++|+++++.++......+ ..+++|++|+++++. ++... ..+...+++|++|+++++..... .......++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAF-HRLTKLRLLYLNDNK-LQTLP-AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSS-SSCTTCCEEECCSSC-CSCCC-TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcCCCCCeeCHHHh-cCCCCCCEEECCCCc-cCeeC-hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 568888887775543221112 336777777776653 32111 11122366677777766543221 112233456666
Q ss_pred EEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 219 IDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 219 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
|++++|.+.......+..+++|++|+++++
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 666666655444444455555666666554
No 94
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.04 E-value=1.1e-09 Score=103.64 Aligned_cols=211 Identities=19% Similarity=0.088 Sum_probs=123.8
Q ss_pred hCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCc
Q 016420 86 RFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCS 165 (390)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 165 (390)
.+++|++|+++++. ++. +...+++|++|+++++. ++.- ...+++|+.|++++|.++. +...++
T Consensus 79 ~l~~L~~L~Ls~N~-l~~-----lp~~l~~L~~L~Ls~N~-l~~l-----~~~l~~L~~L~L~~N~l~~-----lp~~l~ 141 (622)
T 3g06_A 79 LPPELRTLEVSGNQ-LTS-----LPVLPPGLLELSIFSNP-LTHL-----PALPSGLCKLWIFGNQLTS-----LPVLPP 141 (622)
T ss_dssp CCTTCCEEEECSCC-CSC-----CCCCCTTCCEEEECSCC-CCCC-----CCCCTTCCEEECCSSCCSC-----CCCCCT
T ss_pred cCCCCCEEEcCCCc-CCc-----CCCCCCCCCEEECcCCc-CCCC-----CCCCCCcCEEECCCCCCCc-----CCCCCC
Confidence 46788888888753 321 11145778888887753 2210 0124556666665554332 111234
Q ss_pred ccceeeccCCCCCCHH--HHH-------------HHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhh
Q 016420 166 TLMRVNLAYCLHISDC--GLR-------------ALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEG 230 (390)
Q Consensus 166 ~L~~L~l~~~~~~~~~--~l~-------------~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 230 (390)
+|++|++++|. ++.- .+. .+...+++|+.|+++++.... +....++|+.|++++|.+....
T Consensus 142 ~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~---l~~~~~~L~~L~L~~N~l~~l~ 217 (622)
T 3g06_A 142 GLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS---LPTLPSELYKLWAYNNRLTSLP 217 (622)
T ss_dssp TCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSCCSSCC
T ss_pred CCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC---CCCccchhhEEECcCCcccccC
Confidence 55555554442 1110 000 000234778888887765322 2234579999999999866421
Q ss_pred HHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHH
Q 016420 231 IIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGW 310 (390)
Q Consensus 231 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 310 (390)
...++|+.|+++++.... +. ..+++|+.|+++++. ++... ..+++|+.|++++|. ++. +
T Consensus 218 ----~~~~~L~~L~Ls~N~L~~----lp----~~l~~L~~L~Ls~N~-L~~lp-----~~~~~L~~L~Ls~N~-L~~--l 276 (622)
T 3g06_A 218 ----ALPSGLKELIVSGNRLTS----LP----VLPSELKELMVSGNR-LTSLP-----MLPSGLLSLSVYRNQ-LTR--L 276 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSC----CC----CCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSC-CCS--C
T ss_pred ----CCCCCCCEEEccCCccCc----CC----CCCCcCcEEECCCCC-CCcCC-----cccccCcEEeCCCCC-CCc--C
Confidence 124789999998874321 11 346899999999986 65322 157899999999874 442 1
Q ss_pred HHHhhcCCCCCeEEcccccccCchHHHHH
Q 016420 311 ASVGLNCNNLEKLHVNRCRNLCDRGLQAL 339 (390)
Q Consensus 311 ~~l~~~~~~L~~L~l~~~~~i~~~~~~~l 339 (390)
......+++|+.|+++++ .+++.....+
T Consensus 277 p~~l~~l~~L~~L~L~~N-~l~~~~~~~l 304 (622)
T 3g06_A 277 PESLIHLSSETTVNLEGN-PLSERTLQAL 304 (622)
T ss_dssp CGGGGGSCTTCEEECCSC-CCCHHHHHHH
T ss_pred CHHHhhccccCEEEecCC-CCCCcCHHHH
Confidence 222346899999999998 5776544433
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.04 E-value=2e-11 Score=102.01 Aligned_cols=128 Identities=13% Similarity=-0.003 Sum_probs=60.5
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCcc---EEEecCC-ccccccchhHhhhhccCCCcc-EEecCCCCCCChHHHHHH
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLE---FLNVSGM-SSTLNGGGLAAIGTGFATRLK-TLNLRMCRNVGDESIVAI 287 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l 287 (390)
.++|++|++++|.+... ..+..+++|+ .|+++++ .... +..-....+++|+ .|+++++. ++.... ..
T Consensus 104 l~~L~~L~l~~n~l~~l--p~~~~l~~L~~L~~L~l~~N~~l~~----i~~~~~~~l~~L~~~L~l~~n~-l~~i~~-~~ 175 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKMF--PDLTKVYSTDIFFILEITDNPYMTS----IPVNAFQGLCNETLTLKLYNNG-FTSVQG-YA 175 (239)
T ss_dssp CTTCCEEEEEEECCCSC--CCCTTCCBCCSEEEEEEESCTTCCE----ECTTTTTTTBSSEEEEECCSCC-CCEECT-TT
T ss_pred CCCCCEEeCCCCCCccc--cccccccccccccEEECCCCcchhh----cCcccccchhcceeEEEcCCCC-CcccCH-hh
Confidence 34555555555554331 1133334444 6666554 2111 1111122356666 77776665 442211 11
Q ss_pred HhcCCCCceeecccccCCChhHHHHHhhcC-CCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCC
Q 016420 288 AKGCPLLEEWNLSLCHEVRFPGWASVGLNC-NNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNS 356 (390)
Q Consensus 288 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~ 356 (390)
+.. ++|+.|+++++..++...... ...+ ++|+.|+++++ .++..... .+++|+.|.+.+ +.
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N-~l~~l~~~----~~~~L~~L~l~~-~~ 237 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQT-SVTALPSK----GLEHLKELIARN-TW 237 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTC-CCCCCCCT----TCTTCSEEECTT-C-
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCC-ccccCChh----HhccCceeeccC-cc
Confidence 222 567777777653233211111 1235 67778888776 45432111 467788887776 54
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.03 E-value=1.5e-11 Score=102.73 Aligned_cols=101 Identities=11% Similarity=-0.038 Sum_probs=51.4
Q ss_pred eEEeecc-CCChhhHHhhhcCCCcc-EEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcC-CCC
Q 016420 218 YIDAESC-QLGPEGIIGIVSGGGLE-FLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGC-PLL 294 (390)
Q Consensus 218 ~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L 294 (390)
+|++++| .+.......+..+++|+ .|+++++....-+.. ... .++|+.|+++++..++..... .+..+ ++|
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~----~~~-~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L 207 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY----AFN-GTKLDAVYLNKNKYLTVIDKD-AFGGVYSGP 207 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT----TTT-TCEEEEEECTTCTTCCEECTT-TTTTCSBCC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh----hcC-CCCCCEEEcCCCCCcccCCHH-HhhccccCC
Confidence 6666666 45444334455566666 666655432211111 111 256777777776324322111 22345 777
Q ss_pred ceeecccccCCChhHHHHHhhcCCCCCeEEccccc
Q 016420 295 EEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCR 329 (390)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 329 (390)
+.|+++++. ++.... ..+++|+.|+++++.
T Consensus 208 ~~L~l~~N~-l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 208 SLLDVSQTS-VTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp SEEECTTCC-CCCCCC----TTCTTCSEEECTTC-
T ss_pred cEEECCCCc-cccCCh----hHhccCceeeccCcc
Confidence 888777743 332111 136678888887664
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.02 E-value=1.4e-09 Score=102.63 Aligned_cols=167 Identities=15% Similarity=0.053 Sum_probs=122.1
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCC
Q 016420 113 GSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQ 192 (390)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 192 (390)
+++|+.|+++++. +..- .. ...+++|+.|+|++|.++.... ...+++|+.|+++++. +.. +.. ...+++
T Consensus 42 L~~L~~L~l~~n~-i~~l--~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~--l~~-l~~l~~ 110 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENK-IKD--LSS-LKDLKK 110 (605)
T ss_dssp HTTCCCCBCTTCC-CCCC--TT-GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSC-CCC--CTT-STTCTT
T ss_pred CCCCCEEECcCCC-CCCC--hH-HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCC-CCC--Chh-hccCCC
Confidence 3789999999875 3321 12 3458999999999996654322 4558999999999875 433 122 234899
Q ss_pred CCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEe
Q 016420 193 LTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLN 272 (390)
Q Consensus 193 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 272 (390)
|+.|+++++....... ...+++|+.|++++|.+... ..+..+++|+.|+|+++.... +.. ...+++|+.|+
T Consensus 111 L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~----~~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 111 LKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD----IVP--LAGLTKLQNLY 181 (605)
T ss_dssp CCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC----CGG--GTTCTTCCEEE
T ss_pred CCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC----chh--hccCCCCCEEE
Confidence 9999999887544333 34568999999999988764 567889999999999875432 111 34589999999
Q ss_pred cCCCCCCChHHHHHHHhcCCCCceeeccccc
Q 016420 273 LRMCRNVGDESIVAIAKGCPLLEEWNLSLCH 303 (390)
Q Consensus 273 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 303 (390)
|++|. +++. .. +..+++|+.|+|+++.
T Consensus 182 Ls~N~-i~~l--~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 182 LSKNH-ISDL--RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSC-CCBC--GG-GTTCTTCSEEECCSEE
T ss_pred CcCCC-CCCC--hH-HccCCCCCEEEccCCc
Confidence 99997 7663 22 4568999999999875
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.02 E-value=1.8e-10 Score=98.96 Aligned_cols=198 Identities=18% Similarity=0.045 Sum_probs=106.3
Q ss_pred hCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCc
Q 016420 86 RFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCS 165 (390)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 165 (390)
.+++++++++++. .++. ++ ....++++.|+++++. ++..... .+..+++|+.|++++|.++.... . ..++
T Consensus 8 ~l~~l~~l~~~~~-~l~~--ip--~~~~~~l~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~--~-~~l~ 77 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTA--LP--PDLPKDTTILHLSENL-LYTFSLA-TLMPYTRLTQLNLDRAELTKLQV--D-GTLP 77 (290)
T ss_dssp CSTTCCEEECTTS-CCSS--CC--SCCCTTCCEEECTTSC-CSEEEGG-GGTTCTTCCEEECTTSCCCEEEC--C-SCCT
T ss_pred ccCCccEEECCCC-CCCc--CC--CCCCCCCCEEEcCCCc-CCccCHH-HhhcCCCCCEEECCCCccCcccC--C-CCCC
Confidence 4567777877753 2221 00 0122578888888764 3322111 23346788888888775543211 1 3467
Q ss_pred ccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc-cccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEE
Q 016420 166 TLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLN 244 (390)
Q Consensus 166 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 244 (390)
+|+.|+++++. +.. +......+++|+.|+++++...... +.....++|++|++++|.+.......+..+++|+.|+
T Consensus 78 ~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 78 VLGTLDLSHNQ-LQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp TCCEEECCSSC-CSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCc-CCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 78888887654 321 1111234677777777766533221 2233446777777777776654444455666777777
Q ss_pred ecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeeccccc
Q 016420 245 VSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCH 303 (390)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 303 (390)
++++....-+.+ ....+++|+.|+++++. ++... ..+ ...++|+.|.+.+++
T Consensus 155 L~~N~l~~l~~~----~~~~l~~L~~L~L~~N~-l~~ip-~~~-~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 155 LANNNLTELPAG----LLNGLENLDTLLLQENS-LYTIP-KGF-FGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTSCCSCCCTT----TTTTCTTCCEEECCSSC-CCCCC-TTT-TTTCCCSEEECCSCC
T ss_pred CCCCcCCccCHH----HhcCcCCCCEEECCCCc-CCccC-hhh-cccccCCeEEeCCCC
Confidence 766543211111 12235677777777765 44211 011 124567777776654
No 99
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=1.4e-09 Score=95.87 Aligned_cols=151 Identities=15% Similarity=0.034 Sum_probs=106.8
Q ss_pred ccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCC--CCh---HHHH
Q 016420 211 GCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRN--VGD---ESIV 285 (390)
Q Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~---~~~~ 285 (390)
..+|+|++|+++++... .+..+ ..++|++|.+..+. ...+.+..+....+|+|++|+|..+.. ..+ ..+.
T Consensus 169 ~~~P~L~~L~L~g~~~l--~l~~~-~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL--SIGKK-PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HTCTTCCEEEEECCBTC--BCCSC-BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred hcCCCCcEEEEeCCCCc--eeccc-cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 45689999999987311 11122 37899999998764 345566666555689999999853210 111 1122
Q ss_pred HHH--hcCCCCceeecccccCCChhHHHHHhh--cCCCCCeEEcccccccCchHHHHHHH---cCCCCceeeccccCCcC
Q 016420 286 AIA--KGCPLLEEWNLSLCHEVRFPGWASVGL--NCNNLEKLHVNRCRNLCDRGLQALRD---GCKQLLILYANKKNSRV 358 (390)
Q Consensus 286 ~l~--~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~~c~~l 358 (390)
.+. ..+|+|+.|.+.+|. +.+.+...++. .+++|++|+++.+ .+++.+...+.. .+++|+.|+++. +.+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~--n~i 319 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKY--NYL 319 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCS--BBC
T ss_pred HHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCC--CcC
Confidence 222 258999999998864 66666555553 4789999999987 799988777763 479999999998 579
Q ss_pred ChHHHHHHHhhc
Q 016420 359 SSTAWELFKMYR 370 (390)
Q Consensus 359 ~~~~~~~l~~~~ 370 (390)
++++++.+.+..
T Consensus 320 ~d~~~~~l~~al 331 (362)
T 2ra8_A 320 SDEMKKELQKSL 331 (362)
T ss_dssp CHHHHHHHHHHC
T ss_pred CHHHHHHHHHHc
Confidence 999999998744
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.00 E-value=2.8e-10 Score=97.73 Aligned_cols=198 Identities=14% Similarity=0.024 Sum_probs=120.7
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCC
Q 016420 113 GSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQ 192 (390)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 192 (390)
++++++++++++. ++.-. ....++++.|++++|.++......+ ..+++|+.|+++++. ++..... ..+++
T Consensus 9 l~~l~~l~~~~~~-l~~ip----~~~~~~l~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~---~~l~~ 78 (290)
T 1p9a_G 9 VASHLEVNCDKRN-LTALP----PDLPKDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAE-LTKLQVD---GTLPV 78 (290)
T ss_dssp STTCCEEECTTSC-CSSCC----SCCCTTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTSC-CCEEECC---SCCTT
T ss_pred cCCccEEECCCCC-CCcCC----CCCCCCCCEEEcCCCcCCccCHHHh-hcCCCCCEEECCCCc-cCcccCC---CCCCc
Confidence 4778889888753 33110 0113689999999886654322223 347889999998765 4331111 35888
Q ss_pred CCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEe
Q 016420 193 LTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLN 272 (390)
Q Consensus 193 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 272 (390)
|+.|+++++....-.......++|++|++++|.+.......+..+++|+.|+++++.....+.+ ....+++|+.|+
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~ 154 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLS 154 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEE
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh----hcccccCCCEEE
Confidence 9999988876443333334557888899888887765555667778888888887643322111 123467888888
Q ss_pred cCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEccccc
Q 016420 273 LRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCR 329 (390)
Q Consensus 273 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 329 (390)
++++. ++.... ..+..+++|+.|+++++. ++. +..-....++|+.|++++++
T Consensus 155 L~~N~-l~~l~~-~~~~~l~~L~~L~L~~N~-l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 155 LANNN-LTELPA-GLLNGLENLDTLLLQENS-LYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTSC-CSCCCT-TTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCCCSEEECCSCC
T ss_pred CCCCc-CCccCH-HHhcCcCCCCEEECCCCc-CCc--cChhhcccccCCeEEeCCCC
Confidence 88876 553221 223446778888887753 321 11111224577788887663
No 101
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.00 E-value=2.5e-10 Score=70.04 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=33.9
Q ss_pred CCCcCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhcc
Q 016420 8 GKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQN 48 (390)
Q Consensus 8 ~~~~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~ 48 (390)
....|..||+|++.+||+||+. .|+.++++|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~-~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCL-PELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCG-GGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhC
Confidence 4668999999999999999996 899999999999999864
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.97 E-value=6.6e-10 Score=101.71 Aligned_cols=138 Identities=17% Similarity=0.078 Sum_probs=73.4
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
++|++|+++++. +.. +....++|++|+++++. +.. +.. ...+++|++|++++|.++. +....++|
T Consensus 111 ~~L~~L~l~~n~-l~~-----l~~~~~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~N~l~~-----lp~~~~~L 175 (454)
T 1jl5_A 111 QSLKSLLVDNNN-LKA-----LSDLPPLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNNSLKK-----LPDLPPSL 175 (454)
T ss_dssp TTCCEEECCSSC-CSC-----CCSCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSCCSC-----CCCCCTTC
T ss_pred CCCcEEECCCCc-cCc-----ccCCCCCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECCCCcCcc-----cCCCcccc
Confidence 556666666432 221 11112567777777653 332 112 3346777777777775542 11223467
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecC
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSG 247 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 247 (390)
+.|+++++. +.. +.. ...+++|+.|+++++.... +....++|++|++++|.+.. +..+..+++|++|++++
T Consensus 176 ~~L~L~~n~-l~~--l~~-~~~l~~L~~L~l~~N~l~~---l~~~~~~L~~L~l~~n~l~~--lp~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 176 EFIAAGNNQ-LEE--LPE-LQNLPFLTAIYADNNSLKK---LPDLPLSLESIVAGNNILEE--LPELQNLPFLTTIYADN 246 (454)
T ss_dssp CEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSCCSS---CCCCCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCS
T ss_pred cEEECcCCc-CCc--Ccc-ccCCCCCCEEECCCCcCCc---CCCCcCcccEEECcCCcCCc--ccccCCCCCCCEEECCC
Confidence 777776653 322 112 2346777777777654322 12233567777777776552 22355667777777766
Q ss_pred Cc
Q 016420 248 MS 249 (390)
Q Consensus 248 ~~ 249 (390)
+.
T Consensus 247 N~ 248 (454)
T 1jl5_A 247 NL 248 (454)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.97 E-value=1.3e-09 Score=99.86 Aligned_cols=52 Identities=17% Similarity=-0.030 Sum_probs=24.1
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccc
Q 016420 265 ATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
+++|+.|+++++. ++.. ....++|+.|+++++. ++. +....++|+.|+++++
T Consensus 236 l~~L~~L~l~~N~-l~~l-----~~~~~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 236 LPFLTTIYADNNL-LKTL-----PDLPPSLEALNVRDNY-LTD-----LPELPQSLTFLDVSEN 287 (454)
T ss_dssp CTTCCEEECCSSC-CSSC-----CSCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS
T ss_pred CCCCCEEECCCCc-CCcc-----cccccccCEEECCCCc-ccc-----cCcccCcCCEEECcCC
Confidence 4555555555554 3321 1123456666665543 221 1112356666666665
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.95 E-value=2.1e-09 Score=82.50 Aligned_cols=85 Identities=24% Similarity=0.225 Sum_probs=54.3
Q ss_pred cCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHH--HHHHH
Q 016420 264 FATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGL--QALRD 341 (390)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~--~~l~~ 341 (390)
.+++|+.|+++++. ++.. +......+++|+.|+++++. +++.........+++|++|+++++ .+++... .....
T Consensus 62 ~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~ 137 (149)
T 2je0_A 62 KLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFK 137 (149)
T ss_dssp CCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHH
T ss_pred cCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHH
Confidence 46778888888776 5543 23344457888888888764 554332233445788888888887 4654322 23445
Q ss_pred cCCCCceeecc
Q 016420 342 GCKQLLILYAN 352 (390)
Q Consensus 342 ~~~~L~~L~l~ 352 (390)
.+++|+.|+++
T Consensus 138 ~l~~L~~L~l~ 148 (149)
T 2je0_A 138 LLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEETTB
T ss_pred HCCCcccccCC
Confidence 68888888775
No 105
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=7.3e-08 Score=76.61 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=86.6
Q ss_pred hhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHH---cCCCccEEEcCCCCCCChHHHHHHHH---hCCCCCeEEeccc
Q 016420 77 SFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQN---YGSKLQTLYLDCCFQITDNGLSVIAT---GCSSLTSISLYRC 150 (390)
Q Consensus 77 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~ 150 (390)
...+...+...+.|++|+|+++..+.+.....++. ..++|++|+++++. +.+.+...++. ..++|++|+|++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 45567777888889999998764677776666543 45788999998875 77776655433 4578899999888
Q ss_pred ccChHHHHHHHhc---Ccccceeec--cCCCCCCHHHHHHHHH---cCCCCCEEecccc
Q 016420 151 NVTDVGLEILAST---CSTLMRVNL--AYCLHISDCGLRALSQ---GCSQLTAVRTSSC 201 (390)
Q Consensus 151 ~~~~~~~~~l~~~---~~~L~~L~l--~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~ 201 (390)
.+++.+...+... .+.|++|++ +++ .+++++...+.+ .++.|++|+++++
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 8888887766544 467888888 555 478877555443 3456666666554
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.87 E-value=1.2e-09 Score=91.91 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=28.5
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYC 175 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 175 (390)
++++.|+++++. +...... ....+++|++|++++|.++......+ ..+++|+.|+++++
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n 93 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANN 93 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTS
T ss_pred CCCCEEEccCCC-cCccCHh-HhcCcccCCEEECCCCcCCccCHhHh-ccCCcCCEEECCCC
Confidence 467777776653 2221111 12235667777766664443211111 23556666666554
No 107
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=4.6e-08 Score=77.77 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=70.4
Q ss_pred cCCCccEEecCCCCCCChHHHHHHH---hcCCCCceeecccccCCChhHHHHHhh---cCCCCCeEEc--ccccccCchH
Q 016420 264 FATRLKTLNLRMCRNVGDESIVAIA---KGCPLLEEWNLSLCHEVRFPGWASVGL---NCNNLEKLHV--NRCRNLCDRG 335 (390)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l--~~~~~i~~~~ 335 (390)
..++|++|+|++|. +++++...++ ...+.|+.|+|+++ .+++.+...++. ..++|++|++ +++ .+++.+
T Consensus 63 ~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g 139 (185)
T 1io0_A 63 TNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNV 139 (185)
T ss_dssp TCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHH
T ss_pred hCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHH
Confidence 46788888888887 8887765543 34578999999886 588888777764 3578999999 666 688887
Q ss_pred HHHHH---HcCCCCceeeccccCCcCChHH
Q 016420 336 LQALR---DGCKQLLILYANKKNSRVSSTA 362 (390)
Q Consensus 336 ~~~l~---~~~~~L~~L~l~~~c~~l~~~~ 362 (390)
...+. ...+.|+.|++++ +.+++++
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~--n~i~~~~ 167 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHF--TQQGPRL 167 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCC--SSHHHHH
T ss_pred HHHHHHHHHhCCCcCEEeccC--CCCChHH
Confidence 65544 4568899999988 6677765
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.87 E-value=7.3e-09 Score=87.54 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=36.3
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
++|++|++++|.+... ..+..+++|+.|+++++.... +. ....+++|+.|+++++. +++. .....+++
T Consensus 106 ~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~----~~--~l~~l~~L~~L~L~~N~-i~~~---~~l~~l~~ 173 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS----IV--MLGFLSKLEVLDLHGNE-ITNT---GGLTRLKK 173 (263)
T ss_dssp SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB----CG--GGGGCTTCCEEECTTSC-CCBC---TTSTTCCC
T ss_pred CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC----Ch--HHccCCCCCEEECCCCc-Ccch---HHhccCCC
Confidence 5666666666655442 234445555555555543211 11 11235556666665554 4433 11223455
Q ss_pred Cceeecccc
Q 016420 294 LEEWNLSLC 302 (390)
Q Consensus 294 L~~L~l~~~ 302 (390)
|+.|+++++
T Consensus 174 L~~L~l~~N 182 (263)
T 1xeu_A 174 VNWIDLTGQ 182 (263)
T ss_dssp CCEEEEEEE
T ss_pred CCEEeCCCC
Confidence 555555543
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.85 E-value=1.5e-09 Score=91.30 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=18.1
Q ss_pred CCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccC
Q 016420 113 GSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVT 153 (390)
Q Consensus 113 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 153 (390)
+++|++|+++++. +..... .....+++|+.|++++|.++
T Consensus 58 l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 58 LTKLTWLNLDYNQ-LQTLSA-GVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp CTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSCCC
T ss_pred cccCCEEECCCCc-CCccCH-hHhccCCcCCEEECCCCccc
Confidence 4566666666543 222111 11223556666666665443
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=1.6e-08 Score=77.52 Aligned_cols=105 Identities=19% Similarity=0.086 Sum_probs=50.0
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
++|++|++++|.+... ..+..+++|++|+++++..... +.. ....+++|++|+++++. +++.........+++
T Consensus 42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~---~~~-~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG---LEV-LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLEN 114 (149)
T ss_dssp TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC---THH-HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTT
T ss_pred CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch---HHH-HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCC
Confidence 4455555554444332 3344445555555554432211 111 11235666777776665 555332223344667
Q ss_pred CceeecccccCCChhHH--HHHhhcCCCCCeEEcc
Q 016420 294 LEEWNLSLCHEVRFPGW--ASVGLNCNNLEKLHVN 326 (390)
Q Consensus 294 L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~ 326 (390)
|+.|+++++. +++... ......+++|+.|+++
T Consensus 115 L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 115 LKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 7777776653 322211 1233346677777664
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=1.5e-08 Score=79.33 Aligned_cols=85 Identities=20% Similarity=0.137 Sum_probs=37.8
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHH--HHHHHc
Q 016420 265 ATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGL--QALRDG 342 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~--~~l~~~ 342 (390)
+++|++|+++++. ++.. +..+...+++|+.|+++++. +++.........+++|+.|+++++ .++.... ......
T Consensus 70 l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 70 LPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKL 145 (168)
T ss_dssp CSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTT
T ss_pred CCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHh
Confidence 4455555555544 3321 11222335555555555542 332111011223556666666665 3433211 123335
Q ss_pred CCCCceeeccc
Q 016420 343 CKQLLILYANK 353 (390)
Q Consensus 343 ~~~L~~L~l~~ 353 (390)
+++|+.|++++
T Consensus 146 l~~L~~L~l~~ 156 (168)
T 2ell_A 146 LPQLTYLDGYD 156 (168)
T ss_dssp CSSCCEETTEE
T ss_pred CccCcEecCCC
Confidence 66666666665
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=1.5e-08 Score=85.63 Aligned_cols=121 Identities=16% Similarity=-0.003 Sum_probs=52.8
Q ss_pred CcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEE
Q 016420 164 CSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFL 243 (390)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 243 (390)
+++|+.|+++++. ++... . ...+++|+.|+++++....... ....++|++|++++|.+.... .+.. ++|+.|
T Consensus 40 l~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~--~~~~-~~L~~L 111 (263)
T 1xeu_A 40 LSGVQNFNGDNSN-IQSLA--G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLN--GIPS-ACLSRL 111 (263)
T ss_dssp HTTCSEEECTTSC-CCCCT--T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCT--TCCC-SSCCEE
T ss_pred cCcCcEEECcCCC-cccch--H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcC--cccc-CcccEE
Confidence 4566666666553 32211 1 1235666666666554322222 233455666666665543311 1111 455555
Q ss_pred EecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccc
Q 016420 244 NVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLC 302 (390)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 302 (390)
+++++.... +. ....+++|+.|+++++. +++.. ....+++|+.|+++++
T Consensus 112 ~L~~N~l~~----~~--~l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 112 FLDNNELRD----TD--SLIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp ECCSSCCSB----SG--GGTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEEECTTS
T ss_pred EccCCccCC----Ch--hhcCcccccEEECCCCc-CCCCh---HHccCCCCCEEECCCC
Confidence 555442211 11 11234555555555554 43321 1223455555555543
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.78 E-value=6.8e-09 Score=81.37 Aligned_cols=13 Identities=15% Similarity=-0.143 Sum_probs=6.3
Q ss_pred cCCCCCeEEcccc
Q 016420 316 NCNNLEKLHVNRC 328 (390)
Q Consensus 316 ~~~~L~~L~l~~~ 328 (390)
.+++|+.|++++|
T Consensus 145 ~l~~L~~L~l~~n 157 (168)
T 2ell_A 145 LLPQLTYLDGYDR 157 (168)
T ss_dssp TCSSCCEETTEET
T ss_pred hCccCcEecCCCC
Confidence 3445555555444
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.75 E-value=1.8e-08 Score=94.13 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=44.1
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQL 193 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 193 (390)
.+++.|+++++. ++. +.. ..+++|+.|++++|.++. +. ..+++|+.|+++++. ++. +..+ ..+|
T Consensus 59 ~~L~~L~Ls~n~-L~~--lp~--~l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~--ip~l---~~~L 122 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSS--LPD--NLPPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LST--LPEL---PASL 122 (571)
T ss_dssp TTCSEEECCSSC-CSC--CCS--CCCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSC--CCCC---CTTC
T ss_pred CCccEEEeCCCC-CCc--cCH--hHcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCC--cchh---hcCC
Confidence 467777777653 322 111 013567777777665542 11 235566666666553 222 1110 1155
Q ss_pred CEEeccccCccCcccccccCCCCCeEEeeccCCC
Q 016420 194 TAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLG 227 (390)
Q Consensus 194 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 227 (390)
+.|+++++....-.. .+++|+.|++++|.+.
T Consensus 123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCCS
T ss_pred CEEECCCCcCCCCCC---cCccccEEeCCCCccC
Confidence 555555543221111 3345555555555443
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.75 E-value=3e-08 Score=78.28 Aligned_cols=84 Identities=20% Similarity=0.114 Sum_probs=38.1
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhH-HHHHhhcCCCCCeEEcccccccCchH--HHHHHH
Q 016420 265 ATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPG-WASVGLNCNNLEKLHVNRCRNLCDRG--LQALRD 341 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~~--~~~l~~ 341 (390)
+++|+.|+++++. ++.... .++..+++|+.|+++++. +++.. +.. ...+++|+.|++++++ ++... -..+..
T Consensus 63 l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~~~-l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~ 137 (176)
T 1a9n_A 63 LRRLKTLLVNNNR-ICRIGE-GLDQALPDLTELILTNNS-LVELGDLDP-LASLKSLTYLCILRNP-VTNKKHYRLYVIY 137 (176)
T ss_dssp CSSCCEEECCSSC-CCEECS-CHHHHCTTCCEEECCSCC-CCCGGGGGG-GGGCTTCCEEECCSSG-GGGSTTHHHHHHH
T ss_pred CCCCCEEECCCCc-ccccCc-chhhcCCCCCEEECCCCc-CCcchhhHh-hhcCCCCCEEEecCCC-CCCcHhHHHHHHH
Confidence 4455555555554 332210 112235556666555542 22211 111 2245666666666652 33211 112334
Q ss_pred cCCCCceeeccc
Q 016420 342 GCKQLLILYANK 353 (390)
Q Consensus 342 ~~~~L~~L~l~~ 353 (390)
.+++|+.|++++
T Consensus 138 ~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 138 KVPQVRVLDFQK 149 (176)
T ss_dssp HCTTCSEETTEE
T ss_pred HCCccceeCCCc
Confidence 567777777766
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.68 E-value=6.6e-09 Score=85.29 Aligned_cols=130 Identities=13% Similarity=-0.002 Sum_probs=60.4
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
++|+.|++++|.+.......+..+++|+.|+++++.... +..-....+++|+.|+++++. ++.... ..+..+++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE----LAPDAFQGLRSLNSLVLYGNK-ITELPK-SLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE----ECTTTTTTCSSCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC----cCHHHhhCCcCCCEEECCCCc-CCccCH-hHccCCCC
Confidence 345555555555444333344445555555555443211 100111235566666666654 432111 12234566
Q ss_pred CceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 294 LEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
|+.|+++++. ++...... ...+++|+.|+++++ .++...... ...+++|+.|++++
T Consensus 106 L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 106 LQLLLLNANK-INCLRVDA-FQDLHNLNLLSLYDN-KLQTIAKGT-FSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCS
T ss_pred CCEEECCCCC-CCEeCHHH-cCCCCCCCEEECCCC-cCCEECHHH-HhCCCCCCEEEeCC
Confidence 6666666542 22211111 123567777777766 344322111 22466777777776
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.59 E-value=3.5e-08 Score=87.58 Aligned_cols=87 Identities=13% Similarity=-0.009 Sum_probs=37.4
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
++|+.|++++|.+.......+..+++|+.|+++++....-+..... ....+++|+.|+++++. ++......+.. ++.
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~l~~~~~~~-l~~ 188 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLMLLDLSSNK-LKKLPLTDLQK-LPA 188 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----CTTCCEEECCSSC-CCCCCHHHHHH-SCH
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc-CcccCCcCCEEECCCCC-CCccCHHHhhh-ccH
Confidence 4455555555554443334444455555555554432211111000 00235566666666655 44333222222 444
Q ss_pred --Cceeeccccc
Q 016420 294 --LEEWNLSLCH 303 (390)
Q Consensus 294 --L~~L~l~~~~ 303 (390)
++.|.+.++.
T Consensus 189 ~~l~~l~l~~N~ 200 (361)
T 2xot_A 189 WVKNGLYLHNNP 200 (361)
T ss_dssp HHHTTEECCSSC
T ss_pred hhcceEEecCCC
Confidence 3556666544
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.59 E-value=4.7e-09 Score=98.49 Aligned_cols=124 Identities=15% Similarity=0.037 Sum_probs=84.6
Q ss_pred CCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccE
Q 016420 191 SQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKT 270 (390)
Q Consensus 191 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 270 (390)
..|+.|+++++....-.. ...+++|+.|++++|.+. ..+..+..+++|+.|+++++.... +. ....+++|+.
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~----lp--~l~~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN----VD--GVANLPRLQE 512 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC----CG--GGTTCSSCCE
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC----Cc--ccCCCCCCcE
Confidence 368889888875433233 445578999999999877 445577888999999998875332 22 2345889999
Q ss_pred EecCCCCCCChHH-HHHHHhcCCCCceeecccccCCCh--hHHHHHhhcCCCCCeEEc
Q 016420 271 LNLRMCRNVGDES-IVAIAKGCPLLEEWNLSLCHEVRF--PGWASVGLNCNNLEKLHV 325 (390)
Q Consensus 271 L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l 325 (390)
|+++++. ++... ... ...+++|+.|+++++. ++. .....+...+|+|+.|++
T Consensus 513 L~Ls~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNR-LQQSAAIQP-LVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSC-CCSSSTTGG-GGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCC-CCCCCCcHH-HhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 9999987 65542 222 3458999999999864 322 123344455789998864
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.58 E-value=8e-08 Score=92.03 Aligned_cols=200 Identities=17% Similarity=0.045 Sum_probs=116.6
Q ss_pred CCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc-ccccccCCCCCe
Q 016420 140 SSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG-IGFNGCSPTLAY 218 (390)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~ 218 (390)
+++++|+|++|.++.-....+ ..+++|++|++++|. ++.-.-.. ...+++|++|+++++....- .+.....++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f-~~l~~L~~L~Ls~N~-i~~i~~~~-f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCE-IQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHHHH-hCCCCCCEEECCCCc-CCCcChhH-hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 479999999996654322223 348899999998874 43211111 23488999999988753221 223344578999
Q ss_pred EEeeccCCChhhHHhhhcCCCccEEEecCCccccc-cchhHhhhhccCCCccEEecCCCCCCCh---HHHHHHHhcCCCC
Q 016420 219 IDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLN-GGGLAAIGTGFATRLKTLNLRMCRNVGD---ESIVAIAKGCPLL 294 (390)
Q Consensus 219 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~L 294 (390)
|++++|.+.......+..+++|++|+++++..... ... ....+++|++|+++++. ++. ..+..+.......
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch----hhccchhhhhhcccCcc-ccccccccccchhhhhhhh
Confidence 99999887765555577788899999887653211 111 12347889999998876 543 3444444323334
Q ss_pred ceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeec
Q 016420 295 EEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYA 351 (390)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l 351 (390)
..++++... ++..... ......++.+++.++ .............++.++...+
T Consensus 204 ~~~~ls~n~-l~~i~~~--~~~~~~~~~l~l~~n-~~~~~~~~~~~~~l~~l~~~~l 256 (635)
T 4g8a_A 204 LSLDLSLNP-MNFIQPG--AFKEIRLHKLTLRNN-FDSLNVMKTCIQGLAGLEVHRL 256 (635)
T ss_dssp CEEECTTCC-CCEECTT--TTTTCEEEEEEEESC-CSSHHHHHHHHHTTTTCEEEEE
T ss_pred hhhhcccCc-ccccCcc--cccchhhhhhhhhcc-cccccccchhhcCCcccccccc
Confidence 556655432 2211100 011234556666654 2333334444556777776655
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.58 E-value=7.8e-09 Score=97.04 Aligned_cols=125 Identities=12% Similarity=0.030 Sum_probs=88.9
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
..|+.|++++|.+... ..+..+++|+.|+++++....-+. ....+++|+.|+++++. ++... -...+++
T Consensus 441 ~~L~~L~Ls~n~l~~l--p~~~~l~~L~~L~Ls~N~l~~lp~-----~~~~l~~L~~L~Ls~N~-l~~lp---~l~~l~~ 509 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDNA-LENVD---GVANLPR 509 (567)
T ss_dssp TTCSEEECTTSCCSSC--CCGGGGTTCCEEECCSSCCCCCCG-----GGGGCTTCCEEECCSSC-CCCCG---GGTTCSS
T ss_pred cCceEEEecCCCCCCC--cCccccccCcEeecCcccccccch-----hhhcCCCCCEEECCCCC-CCCCc---ccCCCCC
Confidence 3699999999987753 248888999999999876442222 23468999999999997 76532 2456899
Q ss_pred CceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCch--HHHHHHHcCCCCceeec
Q 016420 294 LEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDR--GLQALRDGCKQLLILYA 351 (390)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~--~~~~l~~~~~~L~~L~l 351 (390)
|+.|+++++. ++..........+++|+.|+++++ .++.. ....+...+|+|+.|++
T Consensus 510 L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 510 LQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 9999999864 443321122335899999999998 45532 33445556899999864
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.57 E-value=7e-08 Score=78.44 Aligned_cols=81 Identities=12% Similarity=0.021 Sum_probs=32.3
Q ss_pred cccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc-cccccCCCCCeEEeeccCCChhhHHhhhcCCCccEE
Q 016420 165 STLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFL 243 (390)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 243 (390)
++|++|+++++. ++... ......+++|++|++.++...... ......++|++|++++|.+.......+..+++|++|
T Consensus 28 ~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCc-cCcCC-hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 356666665543 22111 011123555555555554322111 111223455555555554443222223344444444
Q ss_pred EecC
Q 016420 244 NVSG 247 (390)
Q Consensus 244 ~l~~ 247 (390)
++++
T Consensus 106 ~L~~ 109 (208)
T 2o6s_A 106 ALNT 109 (208)
T ss_dssp ECCS
T ss_pred EcCC
Confidence 4443
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.57 E-value=2.9e-08 Score=80.76 Aligned_cols=61 Identities=13% Similarity=-0.180 Sum_probs=27.3
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCC
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCR 277 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (390)
.++|++|++++|.+.......+..+++|+.|+++++....... -....+++|++|+++++.
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCC
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH----HHhccCCCccEEEecCCC
Confidence 3456666666555443322233444555555554432211111 011235566666666554
No 123
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.57 E-value=8.4e-09 Score=98.86 Aligned_cols=229 Identities=14% Similarity=-0.008 Sum_probs=122.6
Q ss_pred CCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcc
Q 016420 87 FQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCST 166 (390)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 166 (390)
++.++.+++.......... ...+++|+.|+++.+..............+.+|+.+++..+..... ......+++
T Consensus 348 l~~L~~l~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~--~~~~~~l~~ 421 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM--SSNFLGLEQ 421 (635)
T ss_dssp CTTCCEEEEESCCSCCBCC----CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE--CSCCTTCTT
T ss_pred chhhhhcccccccCCCCcc----cccccccccchhhccccccccccccchhhhhhhhhhhccccccccc--ccccccccc
Confidence 4677777776542211100 1135788888888754211111112223467888888877622211 011223677
Q ss_pred cceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccC-cccccccCCCCCeEEeeccCCCh-hhHHhhhcCCCccEEE
Q 016420 167 LMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVT-GIGFNGCSPTLAYIDAESCQLGP-EGIIGIVSGGGLEFLN 244 (390)
Q Consensus 167 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~ 244 (390)
|+.+++..+........ .....+++++.+++..+.... ........+.++.|++++|.... .....+..+++|+.|+
T Consensus 422 L~~l~l~~~~~~~~~~~-~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp CCEEECTTSEEESTTSS-CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred ccchhhhhccccccccc-cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 88888765432211111 112236777888777654322 12333445678888888776333 2233456677888888
Q ss_pred ecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEE
Q 016420 245 VSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLH 324 (390)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 324 (390)
++++.... +.+-....+++|+.|+|+++. ++..... .+..+++|+.|+++++. ++......+....++|+.|+
T Consensus 501 Ls~N~L~~----l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 501 LSQCQLEQ----LSPTAFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp CTTSCCCE----ECTTTTTTCTTCCEEECTTSC-CCBCCCG-GGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEE
T ss_pred CCCCccCC----cChHHHcCCCCCCEEECCCCc-CCCCChh-HHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEE
Confidence 87764321 111122357788888888875 5432211 13457888888888753 33221111221125788888
Q ss_pred ccccc
Q 016420 325 VNRCR 329 (390)
Q Consensus 325 l~~~~ 329 (390)
+++++
T Consensus 574 L~~Np 578 (635)
T 4g8a_A 574 LTQND 578 (635)
T ss_dssp CTTCC
T ss_pred eeCCC
Confidence 88764
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.55 E-value=5.2e-08 Score=80.44 Aligned_cols=130 Identities=13% Similarity=-0.079 Sum_probs=74.8
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCC
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCP 292 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 292 (390)
+++|++|++++|.+.......+..+++|+.|+++++....-+ .-....+++|+.|+++++. ++.... ..+..++
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~----~~~~~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~ 112 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP----VGVFDSLTQLTVLDLGTNQ-LTVLPS-AVFDRLV 112 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC----hhhcccCCCcCEEECCCCc-CCccCh-hHhCcch
Confidence 356777777777666554555666667777777665432111 1112346777777777775 543221 1233467
Q ss_pred CCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 293 LLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
+|+.|+++++. ++. +..-...+++|+.|+++++ .++.... .....+++|+.|++++
T Consensus 113 ~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 113 HLKELFMCCNK-LTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TCCEEECCSSC-CCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTT
T ss_pred hhCeEeccCCc-ccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeC
Confidence 78888877753 331 1111245678888888877 4553222 2233578888888887
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.50 E-value=8.1e-08 Score=78.73 Aligned_cols=35 Identities=9% Similarity=0.013 Sum_probs=17.4
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
++|++|++++|.+.......+..+++|+.|+++++
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 45555555555544433334444445555555444
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.50 E-value=2e-07 Score=73.50 Aligned_cols=13 Identities=8% Similarity=0.233 Sum_probs=7.0
Q ss_pred cCCCCCeEEcccc
Q 016420 316 NCNNLEKLHVNRC 328 (390)
Q Consensus 316 ~~~~L~~L~l~~~ 328 (390)
.+++|+.|+++++
T Consensus 138 ~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 138 KVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCSEETTEEC
T ss_pred HCCccceeCCCcC
Confidence 3555555555544
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.48 E-value=3.3e-08 Score=81.11 Aligned_cols=60 Identities=17% Similarity=0.045 Sum_probs=27.7
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCR 277 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (390)
++|++|++++|.+.......+..+++|+.|+++++....... -....+++|+.|+++++.
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP----GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT----TTTTTCTTCCEEECCSCC
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH----HHhcCCCCCCEEEecCcC
Confidence 444555555444444333344444555555555443211100 011235667777776665
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.47 E-value=1.5e-07 Score=83.38 Aligned_cols=108 Identities=16% Similarity=-0.009 Sum_probs=52.8
Q ss_pred cccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcc-cccccCCCCCeEEeeccCCChhhHHhhhcCCCccEE
Q 016420 165 STLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGI-GFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFL 243 (390)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 243 (390)
+.++.|+++++. ++......+...+++|+.|+++++...... ......++|++|++++|.+.......+..+++|+.|
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 357777777653 333211111113666777776665422211 112334566667766666554444445555666666
Q ss_pred EecCCccccccchhHhhhhccCCCccEEecCCCC
Q 016420 244 NVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCR 277 (390)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (390)
+++++...... .-....+++|++|+++++.
T Consensus 118 ~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 118 LLYNNHIVVVD----RNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp ECCSSCCCEEC----TTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccEEC----HHHhCCcccCCEEECCCCc
Confidence 66554322111 1112235566666666554
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.46 E-value=8.7e-08 Score=77.19 Aligned_cols=80 Identities=16% Similarity=0.021 Sum_probs=45.5
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCch---------H
Q 016420 265 ATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDR---------G 335 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~---------~ 335 (390)
+++|+.|+++++. ++.. ..+ ..+++|+.|+++++. +++.........+++|+.|+++++ .+++. .
T Consensus 92 ~~~L~~L~L~~N~-l~~l--~~~-~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IASL--SGI-EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEY 165 (198)
T ss_dssp HHHCSEEEEEEEE-CCCH--HHH-HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHH
T ss_pred CCcCCEEECcCCc-CCcC--Ccc-ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHH
Confidence 4667777777765 5542 222 336777777777753 443222122335677888888776 34322 1
Q ss_pred HHHHHHcCCCCceee
Q 016420 336 LQALRDGCKQLLILY 350 (390)
Q Consensus 336 ~~~l~~~~~~L~~L~ 350 (390)
...+...+++|+.|+
T Consensus 166 ~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHCSSCSEEC
T ss_pred HHHHHHhCCCcEEEC
Confidence 123345678888776
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.45 E-value=7.5e-07 Score=83.30 Aligned_cols=188 Identities=14% Similarity=0.032 Sum_probs=101.3
Q ss_pred CCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCccc
Q 016420 88 QHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTL 167 (390)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 167 (390)
.+++.|+++++. ++. ++. ..+++|++|+++++. ++. +. ..+++|+.|++++|.++. +..+ ..+|
T Consensus 59 ~~L~~L~Ls~n~-L~~--lp~--~l~~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~Ls~N~l~~--ip~l---~~~L 122 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSS--LPD--NLPPQITVLEITQNA-LIS--LP---ELPASLEYLDACDNRLST--LPEL---PASL 122 (571)
T ss_dssp TTCSEEECCSSC-CSC--CCS--CCCTTCSEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCSC--CCCC---CTTC
T ss_pred CCccEEEeCCCC-CCc--cCH--hHcCCCCEEECcCCC-Ccc--cc---cccCCCCEEEccCCCCCC--cchh---hcCC
Confidence 477888887642 322 110 113678888887764 331 11 346788888888775554 2111 2278
Q ss_pred ceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecC
Q 016420 168 MRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSG 247 (390)
Q Consensus 168 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 247 (390)
+.|+++++. ++. +.. .+++|+.|+++++.... +...+++|++|++++|.+..... +. ++|+.|++++
T Consensus 123 ~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N~l~~---lp~~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 123 KHLDVDNNQ-LTM--LPE---LPALLEYINADNNQLTM---LPELPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVST 189 (571)
T ss_dssp CEEECCSSC-CSC--CCC---CCTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCS
T ss_pred CEEECCCCc-CCC--CCC---cCccccEEeCCCCccCc---CCCcCCCcCEEECCCCCCCCcch--hh--CCCCEEECcC
Confidence 888887664 332 111 46778888887765322 11145678888888877654221 22 6788888877
Q ss_pred CccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhH
Q 016420 248 MSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPG 309 (390)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 309 (390)
+....-+. +..-.....+.|+.|++++|. ++... ..+.. +++|+.|+|+++ .++...
T Consensus 190 N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~-l~~lp-~~l~~-l~~L~~L~L~~N-~l~~~~ 246 (571)
T 3cvr_A 190 NLLESLPA-VPVRNHHSEETEIFFRCRENR-ITHIP-ENILS-LDPTCTIILEDN-PLSSRI 246 (571)
T ss_dssp SCCSSCCC-CC--------CCEEEECCSSC-CCCCC-GGGGG-SCTTEEEECCSS-SCCHHH
T ss_pred CCCCchhh-HHHhhhcccccceEEecCCCc-ceecC-HHHhc-CCCCCEEEeeCC-cCCCcC
Confidence 64331111 110000011222788887776 55321 12333 777888888775 355443
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.44 E-value=1.1e-07 Score=77.84 Aligned_cols=85 Identities=15% Similarity=-0.072 Sum_probs=45.5
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCC
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCP 292 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 292 (390)
.++|++|++++|.+.......+..+++|++|+++++...... ......+++|+.|+++++. ++...... +..++
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~ 153 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG----NDSFIGLSSVRLLSLYDNQ-ITTVAPGA-FDTLH 153 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC----TTSSTTCTTCSEEECTTSC-CCCBCTTT-TTTCT
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC----HhHcCCCccCCEEECCCCc-CCEECHHH-hcCCC
Confidence 355666666666655544455566667777777665432111 1112235667777776665 44321111 23466
Q ss_pred CCceeeccccc
Q 016420 293 LLEEWNLSLCH 303 (390)
Q Consensus 293 ~L~~L~l~~~~ 303 (390)
+|+.|+++++.
T Consensus 154 ~L~~L~L~~N~ 164 (220)
T 2v70_A 154 SLSTLNLLANP 164 (220)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEecCcC
Confidence 67777776654
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.44 E-value=2.1e-07 Score=76.82 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=17.8
Q ss_pred CCCCeEEecccccChHHHHHHHhcCcccceeeccCC
Q 016420 140 SSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYC 175 (390)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 175 (390)
++|+.|++++|.++...... ...+++|+.|+++++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSN 74 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCC
Confidence 56666766666444321111 123556666666554
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.41 E-value=1.6e-08 Score=89.31 Aligned_cols=223 Identities=14% Similarity=-0.003 Sum_probs=123.3
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQL 193 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 193 (390)
+++++|+++++. ++.-. ...+..+++|++|+|++|.+....-......++++.++....+..+..-.. .....+++|
T Consensus 30 ~~l~~L~Ls~N~-i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC-CSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTC
T ss_pred CCCCEEEccCCc-CCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc-hhhhhcccc
Confidence 689999999864 44211 112345799999999998543211111223466666544433333332111 112358899
Q ss_pred CEEeccccCccCcccc-cccCCCCCeEEeecc-CCChhhHHhhhcC-CCccEEEecCCccccccchhHhhhhccCCCccE
Q 016420 194 TAVRTSSCRTVTGIGF-NGCSPTLAYIDAESC-QLGPEGIIGIVSG-GGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKT 270 (390)
Q Consensus 194 ~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 270 (390)
+.|++.++........ .....++..|++.++ .+.......+... ..++.|+++++....-+... . ...+|+.
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----f-~~~~L~~ 181 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----F-NGTQLDE 181 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS----S-TTEEEEE
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh----c-cccchhH
Confidence 9999988754322211 112245677777654 3433333333333 35788888776432111111 1 2457888
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceee
Q 016420 271 LNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILY 350 (390)
Q Consensus 271 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~ 350 (390)
|.+.++..++.... ..+..+++|+.|+++++. ++.-.. ..+.+|+.|.+.++.+++. +.. ...+++|+.++
T Consensus 182 l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~-l~~lp~----~~~~~L~~L~~l~~~~l~~--lP~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 182 LNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IHSLPS----YGLENLKKLRARSTYNLKK--LPT-LEKLVALMEAS 252 (350)
T ss_dssp EECTTCTTCCCCCT-TTTTTEECCSEEECTTSC-CCCCCS----SSCTTCCEEECTTCTTCCC--CCC-TTTCCSCCEEE
T ss_pred HhhccCCcccCCCH-HHhccCcccchhhcCCCC-cCccCh----hhhccchHhhhccCCCcCc--CCC-chhCcChhhCc
Confidence 88876543443221 123457899999999864 332110 1356888888877755543 222 23678899998
Q ss_pred ccc
Q 016420 351 ANK 353 (390)
Q Consensus 351 l~~ 353 (390)
+..
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 865
No 134
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.34 E-value=1.8e-05 Score=62.50 Aligned_cols=123 Identities=12% Similarity=0.081 Sum_probs=83.4
Q ss_pred hhHHHHHHhhCCCccEEEecCCCCCChhHHHHHHH---cCCCccEEEcCCCCCCChHHHHHHH---HhCCCCCeEEeccc
Q 016420 77 SFHVGRLLTRFQHLNWLSLSGCTELPDSGLNQLQN---YGSKLQTLYLDCCFQITDNGLSVIA---TGCSSLTSISLYRC 150 (390)
Q Consensus 77 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~ 150 (390)
...+..+...-+.|++|+|++...+.+.....++. ....|+.|+|+++. +.+.+...++ ..-+.|++|+|+.|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCC
Confidence 44566777777888888888655677776666543 45678888888865 7776654443 33577888888888
Q ss_pred ccChHHHHHHHhcC---cccceeeccCCC--CCCHHHHHHH---HHcCCCCCEEeccc
Q 016420 151 NVTDVGLEILASTC---STLMRVNLAYCL--HISDCGLRAL---SQGCSQLTAVRTSS 200 (390)
Q Consensus 151 ~~~~~~~~~l~~~~---~~L~~L~l~~~~--~~~~~~l~~l---~~~~~~L~~L~l~~ 200 (390)
.+++.+...+...+ +.|++|+++++. .+++.+...+ .+..+.|+.|++..
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 88888887776654 468888886532 4566554333 34466777777654
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=3.3e-07 Score=80.12 Aligned_cols=103 Identities=16% Similarity=-0.013 Sum_probs=64.4
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCcc-EEecCCCCCCChHHHHHHHhcC
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLK-TLNLRMCRNVGDESIVAIAKGC 291 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~ 291 (390)
+++|+.+++.+|.+.......+..+.+|+.+++...-.. +..-++..+++|+ .+.+... ++..+- ..+..|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~-----I~~~aF~~~~~L~~~l~l~~~--l~~I~~-~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKT-----IGQRVFSNCGRLAGTLELPAS--VTAIEF-GAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCE-----ECTTTTTTCTTCCEEEEECTT--CCEECT-TTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccce-----ehHHHhhCChhccEEEEEccc--ceEEch-hhhhCC
Confidence 578888888888777666667788888888888764211 2222334688898 8888762 332221 124568
Q ss_pred CCCceeecccccCCChhHHHHHhhcCCCCCeEEc
Q 016420 292 PLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHV 325 (390)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 325 (390)
++|+.|.+.+. .++.-+-.. ..+|++|+.+..
T Consensus 297 ~~L~~l~l~~n-~i~~I~~~a-F~~~~~L~~ly~ 328 (329)
T 3sb4_A 297 DNLRYVLATGD-KITTLGDEL-FGNGVPSKLIYK 328 (329)
T ss_dssp TTEEEEEECSS-CCCEECTTT-TCTTCCCCEEEC
T ss_pred ccCCEEEeCCC-ccCccchhh-hcCCcchhhhcc
Confidence 89999988653 233222112 235788888753
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.25 E-value=2.8e-07 Score=74.18 Aligned_cols=129 Identities=14% Similarity=0.035 Sum_probs=81.5
Q ss_pred hhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHH
Q 016420 233 GIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWAS 312 (390)
Q Consensus 233 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 312 (390)
.+..+++|++|+++++.... +. ....+++|+.|+++++. ++. +......+++|+.|+++++. ++.. ..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~----l~--~~~~l~~L~~L~l~~n~-l~~--l~~~~~~~~~L~~L~L~~N~-l~~l--~~ 110 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK----IS--SLSGMENLRILSLGRNL-IKK--IENLDAVADTLEELWISYNQ-IASL--SG 110 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC----CC--CHHHHTTCCEEEEEEEE-ECS--CSSHHHHHHHCSEEEEEEEE-CCCH--HH
T ss_pred HHhcCCCCCEEECCCCCCcc----cc--ccccCCCCCEEECCCCC-ccc--ccchhhcCCcCCEEECcCCc-CCcC--Cc
Confidence 45556677777776553221 11 12246788999888876 553 22233446899999999974 4432 23
Q ss_pred HhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCChH---------HHHHHHhhcCceeEee
Q 016420 313 VGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVSST---------AWELFKMYRGNVDIKD 377 (390)
Q Consensus 313 l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~~~---------~~~~l~~~~~~l~~~~ 377 (390)
+ ..+++|+.|+++++ .+++.........+++|+.|++++ +.++.. ........+|+++.-+
T Consensus 111 ~-~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~--N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 I-EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAG--NPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp H-HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECS--CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred c-ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecC--CccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 3 34679999999998 687644323344799999999999 555433 1223345677776554
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=4.3e-07 Score=79.42 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=65.6
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCC
Q 016420 265 ATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCK 344 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 344 (390)
..++..+.+.+. +....+..+...|++|+.|+|.++. ++.-+-.. ...|++|++|++.++ ++..+-..+ .+|+
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~~aF-~~~~ 273 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQRVF-SNCG 273 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTT-TTTCTTCCEEECCTT--CCEECTTTT-TTCT
T ss_pred ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhh-hhCCCCCCEEECCcc--cceehHHHh-hCCh
Confidence 445667777664 4556666666779999999998742 33222112 246889999999864 443222222 3789
Q ss_pred CCc-eeeccccCCcCChHHHHHHHhhcCceeEe---ecceeeeCCc
Q 016420 345 QLL-ILYANKKNSRVSSTAWELFKMYRGNVDIK---DEEVMCIGPD 386 (390)
Q Consensus 345 ~L~-~L~l~~~c~~l~~~~~~~l~~~~~~l~~~---~~~~~~~~~~ 386 (390)
+|+ .+.+.+....+.+.+ | ..|++++.. ...+..|++.
T Consensus 274 ~L~~~l~l~~~l~~I~~~a---F-~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 274 RLAGTLELPASVTAIEFGA---F-MGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TCCEEEEECTTCCEECTTT---T-TTCTTEEEEEECSSCCCEECTT
T ss_pred hccEEEEEcccceEEchhh---h-hCCccCCEEEeCCCccCccchh
Confidence 999 998864122333332 2 344555443 3456666654
No 138
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.23 E-value=2.6e-05 Score=61.57 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=16.6
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcC---CCCceeecc
Q 016420 265 ATRLKTLNLRMCRNVGDESIVAIAKGC---PLLEEWNLS 300 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~~l~~~~---~~L~~L~l~ 300 (390)
...|++|+|+.+. +++.+...+++.+ ..|+.|.|+
T Consensus 97 N~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 97 SPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp CSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred CCccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECC
Confidence 3445555555554 5555554444322 224444444
No 139
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.09 E-value=1.2e-06 Score=73.61 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=35.7
Q ss_pred CCCcCCCCCHHHHHHHHhhCCCccchh-HHhhhhhhhHhhcc
Q 016420 8 GKTSIMDLPDDCLCFIFQWLDCGTDCE-SFGLTCHRWLDIQN 48 (390)
Q Consensus 8 ~~~~~~~LP~evl~~If~~L~~~~~~~-~~~~vcr~w~~~~~ 48 (390)
....+..||+|++.+||++|+. +++. ++++|||+|+.++.
T Consensus 47 ~~~~~~~LP~ell~~Il~~Lp~-~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 47 AVEYLAELPEPLLLRVLAELPA-TELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCCTTSSCHHHHHHHHHTSCH-HHHHHTGGGTCHHHHHHHT
T ss_pred cccChhhCCHHHHHHHHHcCCH-HHHHHHHHHHhHHHHHHhc
Confidence 3467899999999999999996 8888 99999999999864
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.01 E-value=3.9e-07 Score=80.43 Aligned_cols=204 Identities=12% Similarity=0.028 Sum_probs=121.4
Q ss_pred CCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCc--ccccccCCCCC
Q 016420 140 SSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTG--IGFNGCSPTLA 217 (390)
Q Consensus 140 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~ 217 (390)
+++++|+|++|.++.-.-.. ...+++|++|+++++.....-.. .....++++.++....+..+.. .......++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEECTTS-STTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCCcCHHH-HcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 68999999999665322112 24589999999988753221110 1122467777665544433332 22345568999
Q ss_pred eEEeeccCCChhhHHhhhcCCCccEEEecCCcccccc--chhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCc
Q 016420 218 YIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNG--GGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLE 295 (390)
Q Consensus 218 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 295 (390)
+|++++|.+............++..|++.++...... ..+. .....++.|+++++. ++...... + ..++|+
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~----~~~~~l~~L~L~~N~-i~~i~~~~-f-~~~~L~ 180 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV----GLSFESVILWLNKNG-IQEIHNSA-F-NGTQLD 180 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST----TSBSSCEEEECCSSC-CCEECTTS-S-TTEEEE
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchh----hcchhhhhhcccccc-ccCCChhh-c-cccchh
Confidence 9999999876544444445556778887654322111 1111 123468899999987 65422111 1 246799
Q ss_pred eeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccccCCcCC
Q 016420 296 EWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANKKNSRVS 359 (390)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~c~~l~ 359 (390)
.|.+.+++.++.-... ....+++|+.|+++++ .++.-.. ..+.+|+.|.+.+ |..++
T Consensus 181 ~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~-~~~l~ 237 (350)
T 4ay9_X 181 ELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHSLPS----YGLENLKKLRARS-TYNLK 237 (350)
T ss_dssp EEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTT-CTTCC
T ss_pred HHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCccCh----hhhccchHhhhcc-CCCcC
Confidence 9999876655432211 1235689999999998 5664211 2356777777766 65544
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.01 E-value=1.3e-05 Score=64.04 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=5.0
Q ss_pred ccceeeccCC
Q 016420 166 TLMRVNLAYC 175 (390)
Q Consensus 166 ~L~~L~l~~~ 175 (390)
+|+.|+++++
T Consensus 32 ~l~~L~L~~n 41 (193)
T 2wfh_A 32 DVTELYLDGN 41 (193)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 4555555443
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.95 E-value=2.2e-06 Score=68.48 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=7.5
Q ss_pred CCCccEEecCCCC
Q 016420 265 ATRLKTLNLRMCR 277 (390)
Q Consensus 265 ~~~L~~L~l~~~~ 277 (390)
+++|++|+++++.
T Consensus 125 l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 125 LNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECTTCC
T ss_pred CCCCCEEEeCCCC
Confidence 4556666665554
No 143
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.91 E-value=1.7e-06 Score=71.77 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=34.6
Q ss_pred CcCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhcc
Q 016420 10 TSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQN 48 (390)
Q Consensus 10 ~~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~ 48 (390)
..++.||+||+.+||+||+. +|+.++++|||+||.++.
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p-~DL~~l~~vcr~Wr~la~ 40 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSP-HDLCQLGSTNHYWNETVR 40 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCH-HHHHHHHTTCHHHHHHHT
T ss_pred chhHhCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhc
Confidence 45789999999999999995 899999999999999864
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.89 E-value=2.2e-05 Score=62.55 Aligned_cols=86 Identities=16% Similarity=-0.026 Sum_probs=42.8
Q ss_pred cCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcC
Q 016420 212 CSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGC 291 (390)
Q Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 291 (390)
..++|++|++++|.+.......+..+++|+.|+++++....... -....+++|+.|+++++. ++...... +..+
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l 125 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQ-ISCVMPGS-FEHL 125 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSC-CCEECTTS-STTC
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCc-CCeeCHHH-hhcC
Confidence 34556666666665554444455555566666665543221111 011235667777776665 44321111 2235
Q ss_pred CCCceeeccccc
Q 016420 292 PLLEEWNLSLCH 303 (390)
Q Consensus 292 ~~L~~L~l~~~~ 303 (390)
++|+.|+++++.
T Consensus 126 ~~L~~L~L~~N~ 137 (192)
T 1w8a_A 126 NSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEeCCCC
Confidence 666666666543
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.88 E-value=9.8e-06 Score=64.71 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=6.8
Q ss_pred CCCccEEecCCCC
Q 016420 265 ATRLKTLNLRMCR 277 (390)
Q Consensus 265 ~~~L~~L~l~~~~ 277 (390)
+++|+.|+++++.
T Consensus 125 l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 125 LSALSHLAIGANP 137 (193)
T ss_dssp CTTCCEEECCSSC
T ss_pred CccccEEEeCCCC
Confidence 4455555555543
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.86 E-value=7.9e-06 Score=64.25 Aligned_cols=60 Identities=13% Similarity=-0.088 Sum_probs=26.7
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCR 277 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (390)
++|++|++++|.+.......+..+++|++|+++++....-+.. ....+++|++|+++++.
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG----IFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSC
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH----HhcCCcccCEEEecCCC
Confidence 3444444444444332222334444555555544432111111 11235677777777765
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.82 E-value=1.7e-05 Score=76.78 Aligned_cols=110 Identities=12% Similarity=-0.070 Sum_probs=63.9
Q ss_pred hcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCcc
Q 016420 162 STCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLE 241 (390)
Q Consensus 162 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 241 (390)
..++.|+.|+++++. +..-. ..+. .+++|+.|+++++....-......+++|+.|++++|.+. ..+..+..+++|+
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~l~-~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFNIS-ANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp -CCCCCCEEECTTSC-CSCCC-GGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred ccCCCCcEEECCCCC-CCCCC-hhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 346778888887664 22100 0111 477788888777654322222344567888888877766 3345566677777
Q ss_pred EEEecCCccccccchhHhhhhccCCCccEEecCCCCCCCh
Q 016420 242 FLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGD 281 (390)
Q Consensus 242 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 281 (390)
+|+|+++....-+.. ...+++|+.|+|+++. ++.
T Consensus 297 ~L~L~~N~l~~lp~~-----~~~l~~L~~L~L~~N~-l~~ 330 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWE-----FGNLCNLQFLGVEGNP-LEK 330 (727)
T ss_dssp EEECCSSCCCCCCSS-----TTSCTTCCCEECTTSC-CCS
T ss_pred EEECCCCCCCccChh-----hhcCCCccEEeCCCCc-cCC
Confidence 777776643221221 2346777777777776 554
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.81 E-value=3.7e-05 Score=60.34 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=25.7
Q ss_pred CCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccc
Q 016420 265 ATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRC 328 (390)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (390)
+++|+.|+++++. ++.... ..+..+++|+.|+++++. ++.... .....+++|+.|+++++
T Consensus 75 l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 75 LTKLTILYLHENK-LQSLPN-GVFDKLTQLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCccCEEECCCCC-ccccCH-HHhhCCcccCEEECcCCc-ceEeCH-HHhcCCcccCEEEecCC
Confidence 4455555555544 332111 112234555555555542 221110 11123456666666665
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.79 E-value=2.3e-05 Score=75.91 Aligned_cols=110 Identities=16% Similarity=0.064 Sum_probs=73.6
Q ss_pred HHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCC
Q 016420 135 IATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCLHISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSP 214 (390)
Q Consensus 135 l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 214 (390)
....+++|+.|+|++|.+..-. ..+. .+++|+.|+++++. ++. +..-...+++|+.|+++++....-......++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~-~~~~-~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNIS-ANIF-KYDFLTRLYLNGNS-LTE--LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCC-GGGG-GCCSCSCCBCTTSC-CSC--CCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred hhccCCCCcEEECCCCCCCCCC-hhhc-CCCCCCEEEeeCCc-Ccc--cChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 3445788999999998554211 1122 47899999998875 441 21212458899999999877443222234567
Q ss_pred CCCeEEeeccCCChhhHHhhhcCCCccEEEecCCcc
Q 016420 215 TLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSS 250 (390)
Q Consensus 215 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 250 (390)
+|++|++++|.+. ..+..+..+++|+.|+|+++..
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 8999999999876 3344578888999999988754
No 150
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.58 E-value=1.3e-05 Score=73.38 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=36.1
Q ss_pred CCCcCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhcc
Q 016420 8 GKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQN 48 (390)
Q Consensus 8 ~~~~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~ 48 (390)
..|.+..||+|++.+||+||+. +++.++++|||+|++++.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~-~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQF-EDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCH-HHHHHHHTTCHHHHHHHT
T ss_pred ccCChHHCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHc
Confidence 4678899999999999999996 899999999999999754
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.43 E-value=0.00023 Score=55.35 Aligned_cols=60 Identities=17% Similarity=-0.040 Sum_probs=30.0
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCR 277 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (390)
++|++|++++|.+.......+..+++|++|+++++....-+.. .+..+++|++|+++++.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG----VFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh----hccCCCCCCEEECCCCc
Confidence 5666666666665554444455555566666555432211111 11234556666665554
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.42 E-value=0.00025 Score=55.36 Aligned_cols=83 Identities=13% Similarity=-0.111 Sum_probs=39.8
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
++|++|++++|.+.......+..+++|+.|+++++....-+.. ....+++|+.|+++++. ++.... ..+..+++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQLTQLDLNDNH-LKSIPR-GAFDNLKS 106 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh----HhCCcchhhEEECCCCc-cceeCH-HHhccccC
Confidence 5667777777666554444455556666666655432211111 11235566666666554 332111 11223455
Q ss_pred Cceeecccc
Q 016420 294 LEEWNLSLC 302 (390)
Q Consensus 294 L~~L~l~~~ 302 (390)
|+.|+++++
T Consensus 107 L~~L~L~~N 115 (174)
T 2r9u_A 107 LTHIYLYNN 115 (174)
T ss_dssp CSEEECCSS
T ss_pred CCEEEeCCC
Confidence 555555543
No 153
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.41 E-value=6.4e-05 Score=68.43 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=37.0
Q ss_pred CCCCcCCCCCHHHHHHHHhhCCCccchhHHhhhhhhhHhhcc
Q 016420 7 DGKTSIMDLPDDCLCFIFQWLDCGTDCESFGLTCHRWLDIQN 48 (390)
Q Consensus 7 ~~~~~~~~LP~evl~~If~~L~~~~~~~~~~~vcr~w~~~~~ 48 (390)
...|.+..||+|++.+||+||+. .++.++++|||+|+.++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~-~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEP-KDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCH-HHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCCH-HHHHHHHHHhHHHHhhcC
Confidence 35788999999999999999995 899999999999999764
No 154
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.34 E-value=3.2e-05 Score=70.27 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=36.2
Q ss_pred CCCcCCCCCHH----HHHHHHhhCCCccchhHHhhhhhhhHhhcc
Q 016420 8 GKTSIMDLPDD----CLCFIFQWLDCGTDCESFGLTCHRWLDIQN 48 (390)
Q Consensus 8 ~~~~~~~LP~e----vl~~If~~L~~~~~~~~~~~vcr~w~~~~~ 48 (390)
..|++..||+| |+.+||+||+. .++.++++|||+|+.++.
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~-~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDA-KSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCH-HHHHHHHHHCHHHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhc
Confidence 46888999999 99999999996 899999999999998754
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.25 E-value=0.00054 Score=57.13 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=44.8
Q ss_pred HcCCCccEEEcCCCCCCCh-HHHHHHHHhCCCCCeEEecccccChH-HHHHHHhcCcccceeeccCCCCCCH------HH
Q 016420 111 NYGSKLQTLYLDCCFQITD-NGLSVIATGCSSLTSISLYRCNVTDV-GLEILASTCSTLMRVNLAYCLHISD------CG 182 (390)
Q Consensus 111 ~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~------~~ 182 (390)
..+++|++|+|+++. ++. ..+......+++|+.|+|++|.+++. .+..+. .+ +|++|++.++. +.. .-
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNS-LCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTST-TGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCc-CccccCcchhH
Confidence 456777777777754 332 22333344577777777777755543 222221 12 67777776654 321 11
Q ss_pred HHHHHHcCCCCCEEe
Q 016420 183 LRALSQGCSQLTAVR 197 (390)
Q Consensus 183 l~~l~~~~~~L~~L~ 197 (390)
...+...+|+|+.|+
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 234445577777665
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.20 E-value=0.00012 Score=65.61 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=5.4
Q ss_pred cCCCCceeecc
Q 016420 290 GCPLLEEWNLS 300 (390)
Q Consensus 290 ~~~~L~~L~l~ 300 (390)
.|++|+.+.|.
T Consensus 298 ~c~~L~~l~l~ 308 (401)
T 4fdw_A 298 GCPKLARFEIP 308 (401)
T ss_dssp TCTTCCEECCC
T ss_pred CCccCCeEEeC
Confidence 34555555544
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.20 E-value=0.0011 Score=51.53 Aligned_cols=60 Identities=15% Similarity=-0.044 Sum_probs=31.7
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCR 277 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (390)
++|++|++++|.+.......+..+++|+.|+++++....-+.. ....+++|+.|+++++.
T Consensus 54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG----AFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHH----HhcCCCCCCEEEeCCCC
Confidence 4555555555555443333345556666666655532211111 12246777888887775
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.19 E-value=0.0011 Score=51.73 Aligned_cols=60 Identities=13% Similarity=-0.080 Sum_probs=30.4
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCR 277 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (390)
++|++|++++|.+.......+..+++|+.|+++++....-+.. ....+++|+.|+++++.
T Consensus 57 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG----AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSC
T ss_pred cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH----HhccccCCCEEEeCCCC
Confidence 4555555555554443323334555666666655432211111 12346777888887775
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.14 E-value=9.9e-05 Score=66.07 Aligned_cols=219 Identities=11% Similarity=0.089 Sum_probs=122.0
Q ss_pred CCccEEEcCCCCCCChHHHHHHHHhCCCCCeEEecccccChHHHHHHHhcCcccceeeccCCC-CCCHHHHHHHHHcCCC
Q 016420 114 SKLQTLYLDCCFQITDNGLSVIATGCSSLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCL-HISDCGLRALSQGCSQ 192 (390)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~ 192 (390)
.+|+.+.+... +..-+- ..+..|++|+.+++..+.++.-+-..+. +.+|+.+.+...- .+.... + ..|++
T Consensus 157 ~~L~~i~lp~~--l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~aF~--~~~L~~l~lp~~l~~I~~~a---F-~~~~~ 227 (401)
T 4fdw_A 157 STVQEIVFPST--LEQLKE-DIFYYCYNLKKADLSKTKITKLPASTFV--YAGIEEVLLPVTLKEIGSQA---F-LKTSQ 227 (401)
T ss_dssp CCCCEEECCTT--CCEECS-STTTTCTTCCEEECTTSCCSEECTTTTT--TCCCSEEECCTTCCEECTTT---T-TTCTT
T ss_pred CCceEEEeCCC--ccEehH-HHhhCcccCCeeecCCCcceEechhhEe--ecccCEEEeCCchheehhhH---h-hCCCC
Confidence 36788877652 221111 1234588899998886633322111222 5688888886421 122222 2 24889
Q ss_pred CCEEecccc-CccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccc-cccchhHhhhhccCCCccE
Q 016420 193 LTAVRTSSC-RTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSST-LNGGGLAAIGTGFATRLKT 270 (390)
Q Consensus 193 L~~L~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~L~~ 270 (390)
|+.+.+... ..+....|.. .+|+.+.+.. .+.......+..+++|+.+.+.+.... .....+..-++..|++|+.
T Consensus 228 L~~l~l~~~l~~I~~~aF~~--~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 228 LKTIEIPENVSTIGQEAFRE--SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp CCCEECCTTCCEECTTTTTT--CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred CCEEecCCCccCcccccccc--CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 999988653 2233344444 5799999843 355555566778889999998765322 0001122223446899999
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcC-CCCcee
Q 016420 271 LNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGC-KQLLIL 349 (390)
Q Consensus 271 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~L~~L 349 (390)
+.+... ++..+- ..+..|++|+.+.|... ++.-+-..+ .+| +|+.+.+.++ .+.... .....++ .+++.|
T Consensus 305 l~l~~~--i~~I~~-~aF~~c~~L~~l~lp~~--l~~I~~~aF-~~~-~L~~l~l~~n-~~~~l~-~~~F~~~~~~l~~l 375 (401)
T 4fdw_A 305 FEIPES--IRILGQ-GLLGGNRKVTQLTIPAN--VTQINFSAF-NNT-GIKEVKVEGT-TPPQVF-EKVWYGFPDDITVI 375 (401)
T ss_dssp ECCCTT--CCEECT-TTTTTCCSCCEEEECTT--CCEECTTSS-SSS-CCCEEEECCS-SCCBCC-CSSCCCSCTTCCEE
T ss_pred EEeCCc--eEEEhh-hhhcCCCCccEEEECcc--ccEEcHHhC-CCC-CCCEEEEcCC-CCcccc-cccccCCCCCccEE
Confidence 999753 332221 12456899999999653 332222222 357 8999999876 222111 0111234 367777
Q ss_pred eccc
Q 016420 350 YANK 353 (390)
Q Consensus 350 ~l~~ 353 (390)
.+..
T Consensus 376 ~vp~ 379 (401)
T 4fdw_A 376 RVPA 379 (401)
T ss_dssp EECG
T ss_pred EeCH
Confidence 7755
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.89 E-value=0.0027 Score=52.90 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=60.6
Q ss_pred HHHHhhCCCccEEEecCCCCCChhHHHHHHHcCCCccEEEcCCCCCCChH-HHHHHHHhCCCCCeEEecccccCh-----
Q 016420 81 GRLLTRFQHLNWLSLSGCTELPDSGLNQLQNYGSKLQTLYLDCCFQITDN-GLSVIATGCSSLTSISLYRCNVTD----- 154 (390)
Q Consensus 81 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~----- 154 (390)
..+...+++|+.|+|+++.-..-..+..+...+++|+.|+|+++. +.+. .+..+. .+ +|++|++.+|.+..
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcc-cC-CcceEEccCCcCccccCcc
Confidence 334467899999999976432222344445567999999999975 4433 333322 23 99999999996653
Q ss_pred -HHHHHHHhcCcccceeecc
Q 016420 155 -VGLEILASTCSTLMRVNLA 173 (390)
Q Consensus 155 -~~~~~l~~~~~~L~~L~l~ 173 (390)
.....+...+|+|+.|+-.
T Consensus 240 ~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHHCTTCCEESSC
T ss_pred hhHHHHHHHHCcccCeECCc
Confidence 2234556669999999754
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.20 E-value=0.012 Score=51.30 Aligned_cols=35 Identities=17% Similarity=-0.098 Sum_probs=17.1
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGM 248 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 248 (390)
++|+.|+|++|.+.......+..+++|+.|+|+++
T Consensus 56 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 44555555555444433334444555555555544
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.16 E-value=0.0087 Score=52.27 Aligned_cols=84 Identities=23% Similarity=0.191 Sum_probs=54.3
Q ss_pred CCCCCeEEeec-cCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcC
Q 016420 213 SPTLAYIDAES-CQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGC 291 (390)
Q Consensus 213 ~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 291 (390)
.++|++|++++ |.+.......+..+++|+.|+|+++.... +..-.+..+++|+.|+|+++. ++.... .++..+
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~~ 103 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF----VAPDAFHFTPRLSRLNLSFNA-LESLSW-KTVQGL 103 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE----ECTTGGGSCSCCCEEECCSSC-CSCCCS-TTTCSC
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce----eCHHHhcCCcCCCEEeCCCCc-cceeCH-HHcccC
Confidence 35688888886 77776666677788889999988775332 211122457888889888876 543221 122223
Q ss_pred CCCceeeccccc
Q 016420 292 PLLEEWNLSLCH 303 (390)
Q Consensus 292 ~~L~~L~l~~~~ 303 (390)
+ |+.|.|.++.
T Consensus 104 ~-L~~l~l~~N~ 114 (347)
T 2ifg_A 104 S-LQELVLSGNP 114 (347)
T ss_dssp C-CCEEECCSSC
T ss_pred C-ceEEEeeCCC
Confidence 3 8888887764
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.89 E-value=0.0064 Score=54.26 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=44.5
Q ss_pred cCCCccEEecCCCC-CCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHc
Q 016420 264 FATRLKTLNLRMCR-NVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDG 342 (390)
Q Consensus 264 ~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 342 (390)
.+.+|+.+.+...- .+.+. .+..|.+|+.+.|... ++.-+-.+ ..+|.+|+.+.+... ++.-+-.. ..+
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~a-F~~c~~L~~i~lp~~--l~~I~~~a-F~~ 364 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYL--VEEIGKRS-FRGCTSLSNINFPLS--LRKIGANA-FQG 364 (394)
T ss_dssp TCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTT--CCEECTTT-TTTCTTCCEECCCTT--CCEECTTT-BTT
T ss_pred ccccccccccccccceechh----hhcCCCCCCEEEeCCc--ccEEhHHh-ccCCCCCCEEEECcc--ccEehHHH-hhC
Confidence 46777777775431 12222 2345788888887542 22211111 235788888888643 33222222 236
Q ss_pred CCCCceeeccc
Q 016420 343 CKQLLILYANK 353 (390)
Q Consensus 343 ~~~L~~L~l~~ 353 (390)
|++|+.+++..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 88888888855
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.24 E-value=0.027 Score=50.10 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=55.2
Q ss_pred hcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHh
Q 016420 235 VSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVG 314 (390)
Q Consensus 235 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (390)
..+..++.+.+.......... ....+..++.+...... +.+. .+..|.+|+.+.+... ++.-+-.+ .
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~~-----~F~~~~~l~~~~~~~~~-i~~~----~F~~~~~L~~i~l~~~--i~~I~~~a-F 316 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGGS-----LFYNCSGLKKVIYGSVI-VPEK----TFYGCSSLTEVKLLDS--VKFIGEEA-F 316 (394)
T ss_dssp TTCSSCCEEEECCTTCEECSC-----TTTTCTTCCEEEECSSE-ECTT----TTTTCTTCCEEEECTT--CCEECTTT-T
T ss_pred cccccceeEEcCCCcceeecc-----ccccccccceeccCcee-eccc----cccccccccccccccc--cceechhh-h
Confidence 344556666654432211111 12246666666665433 3332 2345888998888643 22111111 2
Q ss_pred hcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 315 LNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 315 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
..|.+|+.+.+... ++.-+-..+ .+|.+|+.+.+..
T Consensus 317 ~~c~~L~~i~lp~~--v~~I~~~aF-~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 317 ESCTSLVSIDLPYL--VEEIGKRSF-RGCTSLSNINFPL 352 (394)
T ss_dssp TTCTTCCEECCCTT--CCEECTTTT-TTCTTCCEECCCT
T ss_pred cCCCCCCEEEeCCc--ccEEhHHhc-cCCCCCCEEEECc
Confidence 45889999999642 433222222 3789999998855
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.56 E-value=1.4 Score=38.83 Aligned_cols=123 Identities=17% Similarity=0.113 Sum_probs=65.5
Q ss_pred CCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCC-CCCChHHHHHHHhcC
Q 016420 213 SPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMC-RNVGDESIVAIAKGC 291 (390)
Q Consensus 213 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~ 291 (390)
+..|+.+.+.... ...+-..+..+..|+.+.+...-..... -++..|.+|+.+.|... ..+.+. .+..|
T Consensus 264 c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~i~~I~~-----~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C 333 (394)
T 4gt6_A 264 CAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSRITELPE-----SVFAGCISLKSIDIPEGITQILDD----AFAGC 333 (394)
T ss_dssp CSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECT-----TTTTTCTTCCEEECCTTCCEECTT----TTTTC
T ss_pred cccccEEeccccc-ceecCcccccccccccccCCCcccccCc-----eeecCCCCcCEEEeCCcccEehHh----HhhCC
Confidence 3567777775432 2223344566777888877542211111 12345889999998653 223332 24568
Q ss_pred CCCceeecccccCCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeeccc
Q 016420 292 PLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYANK 353 (390)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 353 (390)
.+|+.+.|... ++.-+-.+ ..+|.+|+.+++.+.. . .... ...|.+|+.+.+..
T Consensus 334 ~~L~~i~ip~s--v~~I~~~a-F~~C~~L~~i~~~~~~-~---~~~~-~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 334 EQLERIAIPSS--VTKIPESA-FSNCTALNNIEYSGSR-S---QWNA-ISTDSGLQNLPVAP 387 (394)
T ss_dssp TTCCEEEECTT--CCBCCGGG-GTTCTTCCEEEESSCH-H---HHHT-CBCCCCC-------
T ss_pred CCCCEEEECcc--cCEEhHhH-hhCCCCCCEEEECCce-e---ehhh-hhccCCCCEEEeCC
Confidence 99999998643 32222112 2468999999998652 1 1222 23678888887754
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.24 E-value=0.59 Score=41.05 Aligned_cols=123 Identities=18% Similarity=0.170 Sum_probs=54.2
Q ss_pred CCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 016420 214 PTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMCRNVGDESIVAIAKGCPL 293 (390)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 293 (390)
.+|+.+.+... +.......+.....|+.+.+...-..... .+...+.+|+.+.+... +...+. ..+..|++
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~-----~aF~~~~~l~~i~l~~~--i~~i~~-~aF~~c~~ 287 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGS-----FLLQNCTALKTLNFYAK--VKTVPY-LLCSGCSN 287 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECT-----TTTTTCTTCCEEEECCC--CSEECT-TTTTTCTT
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCc-----cccceeehhcccccccc--ceeccc-cccccccc
Confidence 45555555432 22222223344556666665432111111 12224566666666432 211111 12345677
Q ss_pred Cceeeccccc--CCChhHHHHHhhcCCCCCeEEcccccccCchHHHHHHHcCCCCceeecc
Q 016420 294 LEEWNLSLCH--EVRFPGWASVGLNCNNLEKLHVNRCRNLCDRGLQALRDGCKQLLILYAN 352 (390)
Q Consensus 294 L~~L~l~~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~ 352 (390)
|+.+.+.+.. .+.+.. ..+|.+|+.+.+... ++.-+-..+ .+|.+|+.+.+.
T Consensus 288 L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~~--l~~I~~~aF-~~C~~L~~i~ip 341 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPTA--LKTIQVYAF-KNCKALSTISYP 341 (379)
T ss_dssp CCEEEECCTTCCEECTTT----TTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCCCCCC
T ss_pred cccccccccccceehhhh----hcCCCCCCEEEcCcc--ccEEHHHHh-hCCCCCCEEEEC
Confidence 7777665421 122221 134667777777532 322111222 256777776663
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.26 E-value=0.53 Score=41.35 Aligned_cols=125 Identities=11% Similarity=0.065 Sum_probs=64.9
Q ss_pred CcccceeeccCCC-CCCHHHHHHHHHcCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccE
Q 016420 164 CSTLMRVNLAYCL-HISDCGLRALSQGCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEF 242 (390)
Q Consensus 164 ~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 242 (390)
+.+|+.+.+.... .+.... ...|..|+.+.+...-..-.......+.+|+.+.+... +.......+..+.+|+.
T Consensus 216 ~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 216 GKNLKKITITSGVTTLGDGA----FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp CSSCSEEECCTTCCEECTTT----TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccceeeeccceeEEcccc----ccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 5667777764321 111111 12377788777754321111122233356777777542 33333345566778888
Q ss_pred EEecCCccccccchhHhhhhccCCCccEEecCCC-CCCChHHHHHHHhcCCCCceeeccc
Q 016420 243 LNVSGMSSTLNGGGLAAIGTGFATRLKTLNLRMC-RNVGDESIVAIAKGCPLLEEWNLSL 301 (390)
Q Consensus 243 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~ 301 (390)
+.+.+.... .+..-++..|.+|+.+.|... ..+.+.. +.+|.+|+.+.+..
T Consensus 291 i~l~~~~i~----~I~~~aF~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~ip~ 342 (379)
T 4h09_A 291 VVMDNSAIE----TLEPRVFMDCVKLSSVTLPTALKTIQVYA----FKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTTCC----EECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCCCCCCT
T ss_pred ccccccccc----eehhhhhcCCCCCCEEEcCccccEEHHHH----hhCCCCCCEEEECC
Confidence 887543211 111112335788998888542 2233322 34688899888854
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=81.62 E-value=2 Score=37.83 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=68.8
Q ss_pred cCCCCCEEeccccCccCcccccccCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecCCccccccchhHhhhhccCCCc
Q 016420 189 GCSQLTAVRTSSCRTVTGIGFNGCSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSGMSSTLNGGGLAAIGTGFATRL 268 (390)
Q Consensus 189 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 268 (390)
.|..|+.+.+......-.......+++|+.+.+.. .+....-..+..+.+|+.+.+...-...... ++..|.+|
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~-----aF~~C~~L 336 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEGITQILDD-----AFAGCEQL 336 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTT-----TTTTCTTC
T ss_pred ecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCcccEehHh-----HhhCCCCC
Confidence 48888888875433222222233446788888853 2333334456677889998885431112222 33468999
Q ss_pred cEEecCCC-CCCChHHHHHHHhcCCCCceeecccccCCChhHHHHHhhcCCCCCeEEccc
Q 016420 269 KTLNLRMC-RNVGDESIVAIAKGCPLLEEWNLSLCHEVRFPGWASVGLNCNNLEKLHVNR 327 (390)
Q Consensus 269 ~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 327 (390)
+.+.|... ..+.+.. +.+|++|+.+.+.+.. ..+.. ...|.+|+.+.+..
T Consensus 337 ~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~~----~~~~~-~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 337 ERIAIPSSVTKIPESA----FSNCTALNNIEYSGSR----SQWNA-ISTDSGLQNLPVAP 387 (394)
T ss_dssp CEEEECTTCCBCCGGG----GTTCTTCCEEEESSCH----HHHHT-CBCCCCC-------
T ss_pred CEEEECcccCEEhHhH----hhCCCCCCEEEECCce----eehhh-hhccCCCCEEEeCC
Confidence 99999643 2244333 4569999999997642 11222 23577888887764
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.57 E-value=1.5 Score=31.65 Aligned_cols=36 Identities=6% Similarity=-0.182 Sum_probs=19.2
Q ss_pred cCCCCCeEEeeccCCChhhHHhhhcCCCccEEEecC
Q 016420 212 CSPTLAYIDAESCQLGPEGIIGIVSGGGLEFLNVSG 247 (390)
Q Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 247 (390)
.+++|++|+|++|.+..-....+..+++|+.|+|.+
T Consensus 29 lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCcCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 445777777777765543333333444444444443
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=55.14 E-value=4.6 Score=29.08 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=16.3
Q ss_pred CCCeEEecccccChHHHHHHHhcCcccceeeccCCC
Q 016420 141 SLTSISLYRCNVTDVGLEILASTCSTLMRVNLAYCL 176 (390)
Q Consensus 141 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 176 (390)
+|+.|+|++|.++.-... ....+++|+.|++.++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPG-LLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTT-TGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChh-hhhhccccCEEEecCCC
Confidence 455566655533321111 12235566666666554
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=21.27 E-value=55 Score=18.32 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=7.4
Q ss_pred cCCCCCHHHHHHHHh
Q 016420 11 SIMDLPDDCLCFIFQ 25 (390)
Q Consensus 11 ~~~~LP~evl~~If~ 25 (390)
-+..||.||-.+|++
T Consensus 20 VF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 20 VFKQLPADIQEEILS 34 (48)
T ss_dssp GTTTSCHHHHHHHTT
T ss_pred HHHHCcHHHHHHHHh
Confidence 344555555555544
Done!