BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016421
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 200 HVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLE 259
++L S E YD TG W + M + R ++ YV+GG T L+ E +++
Sbjct: 172 NILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG-TAHLSSVEAYNIR 230
Query: 260 TRKWRKIEGM-YPNVNRAAQAPPLVAVVDNQLYAV-----EYLTNMVKKYDKLKNTWDVL 313
T W + M P A V+ +LYA+ L + ++ YD + ++W+V+
Sbjct: 231 TDSWTTVTSMTTPRCYVGA------TVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 206 ELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMS--SPTVSLTCGEEFDLETRKW 263
E YD T W LPS+ RR + + + YVIGG S S+ C + E W
Sbjct: 34 EKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93
Query: 264 RKIEGMYPNVNRA-AQAPPL--VAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRL 316
+ M NV R A A L + V T+M ++YD + W +LG +
Sbjct: 94 YSVAPM--NVRRGLAGATTLGDMIYVSGGFDGSRRHTSM-ERYDPNIDQWSMLGDM 146
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 79/220 (35%), Gaps = 32/220 (14%)
Query: 110 EAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGR----------ELFDFAIWK 159
E +DP ++W LP I + S+++ + V G E D+ +
Sbjct: 34 EKYDPKTQEWSFLPSITRKRRY----VASVSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89
Query: 160 YSLVFRSWMKCEGMNHPRCLFXXXXXXXXXXXXXXXDKNGHVLKSAELYDSTTGRWEMLP 219
+ W MN R L D + S E YD +W ML
Sbjct: 90 DGV----WYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLG 144
Query: 220 SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA 279
M + R G Y +GG + L E++D T W + M + A
Sbjct: 145 DMQTAREGAGLVVASGVIYCLGGYDGLNI-LNSVEKYDPHTGHWTNVTPMATKRSGAG-- 201
Query: 280 PPLVAVVDNQLYAV------EYLTNMVKKYDKLKNTWDVL 313
VA++++ +Y V +L++ V+ Y+ ++W +
Sbjct: 202 ---VALLNDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTTV 237
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 156 AIWKYSLVFRSWMKCEGMNHPRCLFXXXXXXXXXXXXXXXDKNGHVLKSAELYDSTTGRW 215
++ Y++ SW M PRC D N +L S E YD W
Sbjct: 223 SVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGN-SLLSSIECYDPIIDSW 281
Query: 216 EMLPSMHSPR 225
E++ SM + R
Sbjct: 282 EVVTSMGTQR 291
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 17/171 (9%)
Query: 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSEL--LVFGRELFD-----FAIWK 159
R +++DP+K +W ++ N D+ S + L L++ FD ++
Sbjct: 77 RTVDSYDPVKDQWTSVA--------NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEA 128
Query: 160 YSLVFRSWMKCEGMNHPRCLFXXXXXXXXXXXXXXXD-KNGHVLKSAELYDSTTGRWEML 218
Y++ W MN R D + L + E Y++TT W +
Sbjct: 129 YNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI 188
Query: 219 PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGM 269
M + R ++ Y +GG P V + E +D T WR++ M
Sbjct: 189 AEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSV-EVYDPTTNAWRQVADM 238
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 201 VLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET 260
V KS E+YD TT W + M+ RR ++G YV+GG + +L E ++ T
Sbjct: 218 VRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGG-DDGSCNLASVEYYNPTT 276
Query: 261 RKWRKIE 267
KW +
Sbjct: 277 DKWTVVS 283
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
++S E YD RW + + S R +M G + +GG + ++ + + +D
Sbjct: 29 IRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNG-SLRVRTVDSYDPVKD 87
Query: 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAV 293
+W + M R ++ AV++ LYAV
Sbjct: 88 QWTSVANM-----RDRRSTLGAAVLNGLLYAV 114
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 207 LYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264
+Y+ G W+ L M +PR + GK + GG++ +S + E FDL+T KW
Sbjct: 179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASV-EAFDLKTNKWE 235
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 9/137 (6%)
Query: 112 FDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFR----SW 167
+DP+ KW + +P + + H ++ + G + D ++ W
Sbjct: 132 YDPVAAKWSEVKNLPI-KVYGH---NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187
Query: 168 MKCEGMNHPRCLFXXXXXXXXXXXXXXXDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRL 227
M PR +F ++G + S E +D T +WE++ R
Sbjct: 188 KDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVMTEFPQERSS 246
Query: 228 CSGFFMDGKFYVIGGMS 244
S + G Y IGG +
Sbjct: 247 ISLVSLAGSLYAIGGFA 263
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGM-SSP-----TVSLTCGEE 255
L E Y+ + G W L + PR +G + G Y +GG +SP + +L C
Sbjct: 38 LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC--- 94
Query: 256 FDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE-----YLTNMVKKYDKLKNTW 310
++ T +W M NR V V+D +YAV N V++Y+ ++ W
Sbjct: 95 YNPMTNQWSPCAPMSVPRNRIG-----VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149
Query: 311 DVLGRLPVR 319
++ + R
Sbjct: 150 HLVAPMLTR 158
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
L S E YD T W + M R G+ YV+GG T L E +D +T
Sbjct: 230 LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF-LDSVECYDPDTD 288
Query: 262 KWRKIEGM 269
W ++ M
Sbjct: 289 TWSEVTRM 296
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
L SAE Y W M+ +M++ R + Y GG L E +D+ET
Sbjct: 183 LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETE 241
Query: 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRL 316
W + M + ++ + V ++Y + + V+ YD +TW + R+
Sbjct: 242 TWTFVAPM-----KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM 296
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGM-SSP-----TVSLTCGEE 255
L E Y+ + G W L + PR +G + G Y +GG +SP + +L C
Sbjct: 39 LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC--- 95
Query: 256 FDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE-----YLTNMVKKYDKLKNTW 310
++ T +W M NR V V+D +YAV N V++Y+ ++ W
Sbjct: 96 YNPMTNQWSPCAPMSVPRNRIG-----VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 150
Query: 311 DVLGRLPVR 319
++ + R
Sbjct: 151 HLVAPMLTR 159
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
L S E YD T W + M R G+ YV+GG T L E +D +T
Sbjct: 231 LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF-LDSVECYDPDTD 289
Query: 262 KWRKIEGM 269
W ++ M
Sbjct: 290 TWSEVTRM 297
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
L SAE Y W M+ +M++ R + Y GG L E +D+ET
Sbjct: 184 LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETE 242
Query: 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRL 316
W + M + ++ + V ++Y + + V+ YD +TW + R+
Sbjct: 243 TWTFVAPM-----KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM 297
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 24/155 (15%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGM-SSP-----TVSLTCGEE 255
L E Y+ + G W L + PR +G + G Y +GG +SP + +L C
Sbjct: 32 LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC--- 88
Query: 256 FDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE-----YLTNMVKKYDKLKNTW 310
++ T +W M NR V V+D +YAV + V++Y+ ++ W
Sbjct: 89 YNPMTNQWSPCASMSVPRNRIG-----VGVIDGHIYAVGGSHGCIHHSSVERYEPERDEW 143
Query: 311 DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRG 345
++ + L+ G+ L VGG G
Sbjct: 144 HLVAPM-----LTRRIGVGVAVLNRLLYAVGGFDG 173
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 11/120 (9%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
L SAE Y W M+ M++ R + Y GG L E +D+ET
Sbjct: 177 LNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETE 235
Query: 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRL 316
W + M R ++ + V ++Y + + V+ YD +TW + R+
Sbjct: 236 TWTFVAPM-----RHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRM 290
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
L S E YD T W + M R GK YV+GG T L E +D ++
Sbjct: 224 LNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTF-LDSVECYDPDSD 282
Query: 262 KWRKIEGMY---PNVNRAAQAPPLVAVVDNQ 289
W ++ M V A P +D Q
Sbjct: 283 TWSEVTRMTSGRSGVGVAVTMEPCRKQIDQQ 313
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 24/155 (15%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGM-SSP-----TVSLTCGEE 255
L E Y+ + G W L + PR +G + G Y +GG +SP + +L C
Sbjct: 31 LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC--- 87
Query: 256 FDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE-----YLTNMVKKYDKLKNTW 310
++ T +W M NR V V+D +YAV + V++Y+ ++ W
Sbjct: 88 YNPMTNQWSPCASMSVPRNRIG-----VGVIDGHIYAVGGSHGCIHHSSVERYEPERDEW 142
Query: 311 DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRG 345
++ + L+ G+ L VGG G
Sbjct: 143 HLVAPM-----LTRRIGVGVAVLNRLLYAVGGFDG 172
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 11/120 (9%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
L SAE Y W M+ M++ R + Y GG L E +D+ET
Sbjct: 176 LNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQD-QLNSVERYDVETE 234
Query: 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAV-----EYLTNMVKKYDKLKNTWDVLGRL 316
W + M R ++ + V ++Y + + V+ YD +TW + R+
Sbjct: 235 TWTFVAPM-----RHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRM 289
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
L S E YD T W + M R GK YV+GG T L E +D ++
Sbjct: 223 LNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTF-LDSVECYDPDSD 281
Query: 262 KWRKIEGMY---PNVNRAAQAPPLVAVVDNQ 289
W ++ M V A P +D Q
Sbjct: 282 TWSEVTRMTSGRSGVGVAVTMEPCRKQIDQQ 312
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGM-SSP-----TVSLTCGEE 255
L E Y+ + G W L + PR +G + G Y +GG +SP + +L C
Sbjct: 38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC--- 94
Query: 256 FDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE-----YLTNMVKKYDKLKNTW 310
++ T +W NR V V+D +YAV N V++Y+ ++ W
Sbjct: 95 YNPXTNQWSPCAPXSVPRNRIG-----VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149
Query: 311 DVLGRLPVRADLSNGWGLAFKACGNELLVVGG 342
+ V L+ G+ L VGG
Sbjct: 150 HL-----VAPXLTRRIGVGVAVLNRLLYAVGG 176
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
L S E YD T W + R G+ YV+GG T L E +D +T
Sbjct: 230 LNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTF-LDSVECYDPDTD 288
Query: 262 KWRKI 266
W ++
Sbjct: 289 TWSEV 293
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 196 DKNGHVL-------KSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPT 247
D NG ++ K LYDS++ W P M R S M DG+ + IGG S
Sbjct: 234 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGG 293
Query: 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLY 291
V GE + ++ W + PN A+ P++ LY
Sbjct: 294 VFEKNGEVYSPSSKTWTSL----PN----AKVNPMLTADKQGLY 329
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 196 DKNGHVL-------KSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPT 247
D NG ++ K LYDS++ W P M R S M DG+ + IGG S
Sbjct: 234 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSGG 293
Query: 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLY 291
V GE + ++ W + PN A+ P++ LY
Sbjct: 294 VFEKNGEVYSPSSKTWTSL----PN----AKVNPMLTADKQGLY 329
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 196 DKNGHVL-------KSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPT 247
D NG ++ K LYDS++ W P M R S M DG+ + IGG S
Sbjct: 234 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGG 293
Query: 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLY 291
V GE + ++ W + PN A+ P++ LY
Sbjct: 294 VFEKNGEVYSPSSKTWTSL----PN----AKVNPMLTADKQGLY 329
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 196 DKNGHVL-------KSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPT 247
D NG ++ K LYDS++ W P M R S M DG+ + IGG S
Sbjct: 256 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGG 315
Query: 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLY 291
V GE + ++ W + PN A+ P++ LY
Sbjct: 316 VFEKNGEVYSPSSKTWTSL----PN----AKVNPMLTADKQGLY 351
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 198 NGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFD 257
+G VL S E+YD T W L M R+ F+ K + +GG + L E +D
Sbjct: 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG-LGGLDNVEYYD 222
Query: 258 LETRKWRKIEGM 269
++ +W+ + M
Sbjct: 223 IKLNEWKMVSPM 234
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 58/165 (35%), Gaps = 15/165 (9%)
Query: 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261
+K + Y+ W +PR + +GK Y GG +L E +D T
Sbjct: 69 IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE 128
Query: 262 KWRKIEGMYPN--VNRAAQAPPLVAVVDNQL--YAVEYLTNMVKKYDKLKNTWDVLGRLP 317
W M + +A L+ V L + N + YD TW L +
Sbjct: 129 SWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM- 187
Query: 318 VRADLSNGWGLAFKACGNELLVVGGQRGPEG------ENVVLNSW 356
+ GL F +++ VGGQ G G ++ LN W
Sbjct: 188 --IEARKNHGLVFVK--DKIFAVGGQNGLGGLDNVEYYDIKLNEW 228
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 196 DKNGHVL-------KSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPT 247
D NG ++ K LYDS++ W P M R S M DG+ + IGG S
Sbjct: 234 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG 293
Query: 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLY 291
V GE + ++ W + PN A+ P++ LY
Sbjct: 294 VFEKNGEVYSPSSKTWTSL----PN----AKVNPMLTADKQGLY 329
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 196 DKNGHVL-------KSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPT 247
D NG ++ K LYDS++ W P M R S M DG+ + IGG S
Sbjct: 251 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG 310
Query: 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLY 291
V GE + ++ W + PN A+ P++ LY
Sbjct: 311 VFEKNGEVYSPSSKTWTSL----PN----AKVNPMLTADKQGLY 346
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 196 DKNGHVL-------KSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPT 247
D NG ++ K LYDS++ W P M R S M DG+ + IGG S
Sbjct: 234 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG 293
Query: 248 VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLY 291
V GE + ++ W + PN A+ P++ LY
Sbjct: 294 VFEKNGEVYSPSSKTWTSL----PN----AKVNPMLTADKQGLY 329
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 14/187 (7%)
Query: 112 FDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDF-----AIWKYSLVFRS 166
FD + +W+ +P +P C + A+ S +V GRE+ D ++ Y +
Sbjct: 72 FDHLDSEWLGMPPLPSPRCLFGLGE---ALNSIYVVGGREIKDGERCLDSVMCYDRLSFK 128
Query: 167 WMKCEGMNHPRCLFXXXXXXXXXXXXXXXDKNGHVLKSAELYDSTTGRWEMLPSMHSPRR 226
W + + + + + L +YD W+ L M + R
Sbjct: 129 WGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS 188
Query: 227 LCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV 286
L DG+ V G++ ++ + E + + KW E +P + LV
Sbjct: 189 LFGATVHDGRIIVAAGVTDTGLT-SSAEVYSITDNKWAPFEA-FPQERSSLSLVSLVGT- 245
Query: 287 DNQLYAV 293
LYA+
Sbjct: 246 ---LYAI 249
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 16/123 (13%)
Query: 167 WMKCEGMNHPRCLFXXXXXXXXXXXXXXXDKNGHVLKSAELYDSTTGRWEMLPSMHSPRR 226
W + M R LF G + SAE+Y T +W + R
Sbjct: 177 WKELAPMQTARSLFGATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNKWAPFEAFPQERS 235
Query: 227 LCSGFFMDGKFYVIGGMSSPTVSLTCGE----------EFDLETRKWRKIEGMYPNVNRA 276
S + G Y IGG + T+ GE ++ E +KW EG+ + A
Sbjct: 236 SLSLVSLVGTLYAIGGFA--TLETESGELVPTELNDIWRYNEEEKKW---EGVLREIAYA 290
Query: 277 AQA 279
A A
Sbjct: 291 AGA 293
>pdb|2GE4|A Chain A, High-Resolution Solution Structure Of Outer Membrane
Protein A Transmembrane Domain
Length = 177
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 287 DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNEL 337
+NQL A + V Y + +D LGR+P + + NG A+KA G +L
Sbjct: 33 ENQLGAGAFGGYQVNPYVGFEMGYDFLGRMPYKGSVENG---AYKAQGVQL 80
>pdb|1G90|A Chain A, Nmr Solution Structure Of Outer Membrane Protein A
Transmembrane Domain: 10 Conformers
Length = 176
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 287 DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNEL 337
+NQL A + V Y + +D LGR+P + + NG A+KA G +L
Sbjct: 32 ENQLGAGAFGGYQVNPYVGFEMGYDFLGRMPYKGSVENG---AYKAQGVQL 79
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 214 RWEMLPSM-HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTC----GEEFDLETRKWRKIEG 268
+W L + PR + F+DG YV GG+ + LT +++ +T W K+
Sbjct: 44 KWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXS 103
Query: 269 MYP 271
P
Sbjct: 104 HAP 106
>pdb|4G68|A Chain A, Biochemical And Structural Insights Into Xylan Utilization
By The Thermophilic Bacteriumcaldanaerobius
Polysaccharolyticus
Length = 456
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 35 DGCCRIGPSDSLLPGLVDDVALNCLAFACTSD-YASLLFINKRF 77
D G D LLPG D+V N + D AS+L+INK
Sbjct: 144 DSYLNDGTKDQLLPGSFDNVTYNGKIYGIPFDQQASVLYINKEL 187
>pdb|4G68|C Chain C, Biochemical And Structural Insights Into Xylan Utilization
By The Thermophilic Bacteriumcaldanaerobius
Polysaccharolyticus
Length = 432
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 35 DGCCRIGPSDSLLPGLVDDVALNCLAFACTSD-YASLLFINKRF 77
D G D LLPG D+V N + D AS+L+INK
Sbjct: 120 DSYLNDGTKDQLLPGSFDNVTYNGKIYGIPFDQQASVLYINKEL 163
>pdb|4G68|B Chain B, Biochemical And Structural Insights Into Xylan Utilization
By The Thermophilic Bacteriumcaldanaerobius
Polysaccharolyticus
Length = 432
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 35 DGCCRIGPSDSLLPGLVDDVALNCLAFACTSD-YASLLFINKRF 77
D G D LLPG D+V N + D AS+L+INK
Sbjct: 120 DSYLNDGTKDQLLPGSFDNVTYNGKIYGIPFDQQASVLYINKEL 163
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 198 NGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEE 255
N +++ + Y+ T W + S+ S +C+G DG +GG ++P V G E
Sbjct: 253 NQRLVRGLDYYNRTVFEW-VTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLE 309
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 198 NGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEE 255
N +++ + Y+ T W + S+ S +C+G DG +GG ++P V G E
Sbjct: 254 NQRLVRGLDYYNRTVFEW-VTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLE 310
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 198 NGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEE 255
N +++ + Y+ T W + S+ S +C+G DG +GG ++P V G E
Sbjct: 261 NQRLVRGLDYYNRTVFEW-VTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLE 317
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 226 RLCSGFFM---DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGM 269
R+C F + + +IGG +P L+ FD++TR+W I+ +
Sbjct: 440 RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL 486
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,916,361
Number of Sequences: 62578
Number of extensions: 491230
Number of successful extensions: 1358
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 55
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)