Query 016421
Match_columns 390
No_of_seqs 246 out of 2961
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:42:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2.3E-46 5E-51 362.7 30.1 350 16-388 196-568 (571)
2 PHA02713 hypothetical protein; 100.0 1.2E-42 2.7E-47 338.3 29.5 243 108-375 273-543 (557)
3 KOG4441 Proteins containing BT 100.0 5.7E-39 1.2E-43 311.2 26.0 231 140-388 282-522 (571)
4 PHA03098 kelch-like protein; P 100.0 2.6E-37 5.6E-42 303.4 29.0 250 108-380 265-526 (534)
5 PHA02713 hypothetical protein; 100.0 7.3E-37 1.6E-41 297.9 28.6 219 155-389 272-513 (557)
6 PLN02153 epithiospecifier prot 100.0 5.5E-36 1.2E-40 277.3 32.0 242 114-373 4-292 (341)
7 PLN02153 epithiospecifier prot 100.0 3.2E-36 7E-41 278.8 30.1 275 77-359 9-339 (341)
8 PHA02790 Kelch-like protein; P 100.0 2.9E-35 6.4E-40 282.8 29.3 208 139-373 268-478 (480)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 6E-35 1.3E-39 271.2 30.2 253 96-357 16-344 (346)
10 PLN02193 nitrile-specifier pro 100.0 8E-35 1.7E-39 279.1 31.6 281 75-360 151-469 (470)
11 PLN02193 nitrile-specifier pro 100.0 5.7E-34 1.2E-38 273.2 33.9 251 109-375 139-420 (470)
12 PRK14131 N-acetylneuraminic ac 100.0 2.6E-34 5.7E-39 268.9 30.0 257 96-360 37-369 (376)
13 TIGR03547 muta_rot_YjhT mutatr 100.0 3E-34 6.6E-39 266.5 29.7 247 122-383 1-316 (346)
14 TIGR03548 mutarot_permut cycli 100.0 7E-34 1.5E-38 261.4 29.4 241 136-388 7-302 (323)
15 TIGR03548 mutarot_permut cycli 100.0 7.7E-34 1.7E-38 261.1 29.6 246 95-351 11-320 (323)
16 PRK14131 N-acetylneuraminic ac 100.0 1.9E-32 4.2E-37 256.3 29.1 254 118-386 18-341 (376)
17 PHA02790 Kelch-like protein; P 100.0 2.3E-32 5E-37 262.8 26.8 197 96-313 270-477 (480)
18 PHA03098 kelch-like protein; P 100.0 1.6E-31 3.5E-36 262.4 27.4 215 96-319 293-524 (534)
19 KOG4693 Uncharacterized conser 100.0 9.4E-31 2E-35 217.5 20.3 242 135-389 16-302 (392)
20 KOG4693 Uncharacterized conser 100.0 2.4E-29 5.2E-34 209.2 21.0 241 97-344 23-312 (392)
21 KOG0379 Kelch repeat-containin 99.9 6E-25 1.3E-29 210.4 27.1 231 136-376 64-312 (482)
22 KOG1230 Protein containing rep 99.9 1.7E-24 3.8E-29 190.4 19.6 223 141-372 77-347 (521)
23 KOG0379 Kelch repeat-containin 99.9 1.9E-22 4.1E-27 193.2 26.1 218 97-317 70-312 (482)
24 KOG1230 Protein containing rep 99.9 3.7E-22 8E-27 175.9 19.2 253 46-313 32-347 (521)
25 KOG4152 Host cell transcriptio 99.9 3.5E-22 7.7E-27 180.2 17.6 263 75-345 17-343 (830)
26 KOG4152 Host cell transcriptio 99.9 7.5E-21 1.6E-25 171.7 17.2 256 117-390 17-333 (830)
27 COG3055 Uncharacterized protei 99.8 3.4E-17 7.4E-22 142.8 21.7 252 97-358 46-373 (381)
28 COG3055 Uncharacterized protei 99.7 3.1E-15 6.6E-20 130.8 15.7 193 169-378 29-268 (381)
29 PF13964 Kelch_6: Kelch motif 99.3 1E-11 2.2E-16 80.3 6.4 50 176-225 1-50 (50)
30 PF13964 Kelch_6: Kelch motif 99.2 9.6E-11 2.1E-15 75.7 6.5 49 224-272 1-49 (50)
31 TIGR01640 F_box_assoc_1 F-box 99.1 4.9E-08 1.1E-12 85.3 24.0 198 155-360 14-229 (230)
32 KOG2437 Muskelin [Signal trans 99.1 7.4E-11 1.6E-15 107.5 4.5 197 162-360 236-472 (723)
33 PF01344 Kelch_1: Kelch motif; 99.1 1.8E-10 4E-15 73.4 4.7 47 176-222 1-47 (47)
34 PF01344 Kelch_1: Kelch motif; 99.0 3.5E-10 7.7E-15 72.0 5.1 47 224-270 1-47 (47)
35 PF13415 Kelch_3: Galactose ox 98.9 4.1E-09 8.9E-14 67.6 6.1 47 186-232 1-48 (49)
36 PF07646 Kelch_2: Kelch motif; 98.9 5.9E-09 1.3E-13 66.8 6.1 47 224-270 1-49 (49)
37 PF07646 Kelch_2: Kelch motif; 98.9 6.6E-09 1.4E-13 66.6 6.2 47 176-222 1-49 (49)
38 PF13418 Kelch_4: Galactose ox 98.9 4.3E-09 9.4E-14 67.6 4.9 47 224-270 1-48 (49)
39 PF13418 Kelch_4: Galactose ox 98.8 4E-09 8.7E-14 67.7 4.2 48 176-223 1-49 (49)
40 PF07250 Glyoxal_oxid_N: Glyox 98.8 8.2E-07 1.8E-11 76.7 17.2 153 157-319 48-211 (243)
41 smart00612 Kelch Kelch domain. 98.7 2.2E-08 4.9E-13 63.5 5.4 47 188-235 1-47 (47)
42 TIGR01640 F_box_assoc_1 F-box 98.7 9.6E-06 2.1E-10 70.9 23.5 198 107-308 14-230 (230)
43 PF13415 Kelch_3: Galactose ox 98.6 1.7E-07 3.7E-12 60.0 5.6 47 234-285 1-48 (49)
44 PLN03215 ascorbic acid mannose 98.6 4.5E-05 9.7E-10 69.9 23.0 38 46-83 3-41 (373)
45 PF12937 F-box-like: F-box-lik 98.5 6.3E-08 1.4E-12 61.4 3.1 42 47-88 1-42 (47)
46 KOG2437 Muskelin [Signal trans 98.5 1.8E-07 3.9E-12 85.9 7.1 183 116-298 238-458 (723)
47 KOG0281 Beta-TrCP (transducin 98.5 1.1E-05 2.5E-10 70.9 15.6 93 252-364 341-433 (499)
48 PLN02772 guanylate kinase 98.4 1.8E-06 4E-11 79.2 11.1 84 174-260 22-109 (398)
49 smart00612 Kelch Kelch domain. 98.4 4.5E-07 9.7E-12 57.4 5.2 47 236-288 1-47 (47)
50 PF13854 Kelch_5: Kelch motif 98.3 1.5E-06 3.3E-11 53.4 5.5 41 173-213 1-42 (42)
51 PF13854 Kelch_5: Kelch motif 98.3 2.4E-06 5.3E-11 52.5 5.4 40 221-260 1-41 (42)
52 PRK11138 outer membrane biogen 98.3 0.0022 4.8E-08 60.8 28.1 235 95-371 67-320 (394)
53 PF07250 Glyoxal_oxid_N: Glyox 98.2 2.3E-05 5E-10 67.8 12.4 152 203-378 46-211 (243)
54 smart00256 FBOX A Receptor for 98.2 1E-06 2.2E-11 54.0 2.5 39 50-88 1-39 (41)
55 PRK11138 outer membrane biogen 98.2 0.0032 7E-08 59.7 27.5 222 97-371 120-361 (394)
56 PF00646 F-box: F-box domain; 98.2 2.7E-07 5.9E-12 58.8 -0.7 41 47-87 3-43 (48)
57 PLN02772 guanylate kinase 98.1 4.5E-05 9.8E-10 70.2 11.3 83 223-307 23-109 (398)
58 PF13360 PQQ_2: PQQ-like domai 98.0 0.0072 1.6E-07 52.7 25.7 192 139-371 33-238 (238)
59 TIGR03300 assembly_YfgL outer 97.9 0.025 5.4E-07 53.3 27.8 221 97-370 105-345 (377)
60 TIGR03300 assembly_YfgL outer 97.7 0.04 8.7E-07 51.9 28.2 227 96-371 64-305 (377)
61 PF13360 PQQ_2: PQQ-like domai 97.7 0.024 5.3E-07 49.4 23.5 182 96-311 35-237 (238)
62 PF07893 DUF1668: Protein of u 97.6 0.003 6.4E-08 58.5 15.2 124 185-315 75-216 (342)
63 PF07893 DUF1668: Protein of u 97.5 0.0046 9.9E-08 57.2 15.3 123 138-269 71-217 (342)
64 PF08450 SGL: SMP-30/Gluconola 97.4 0.012 2.5E-07 51.9 16.6 205 142-388 11-233 (246)
65 PF03089 RAG2: Recombination a 97.2 0.0083 1.8E-07 52.1 11.8 119 188-345 40-175 (337)
66 KOG0274 Cdc4 and related F-box 97.1 0.16 3.5E-06 49.9 21.4 283 41-360 102-401 (537)
67 PF12768 Rax2: Cortical protei 97.0 0.042 9E-07 49.1 14.9 163 189-359 1-186 (281)
68 KOG2120 SCF ubiquitin ligase, 96.7 0.0012 2.5E-08 58.0 3.0 44 44-87 95-138 (419)
69 cd00216 PQQ_DH Dehydrogenases 96.7 0.68 1.5E-05 45.3 28.2 259 95-372 59-383 (488)
70 PF05096 Glu_cyclase_2: Glutam 96.4 0.091 2E-06 46.0 12.7 105 233-360 54-158 (264)
71 PF03089 RAG2: Recombination a 96.4 0.59 1.3E-05 41.0 17.3 76 170-245 81-175 (337)
72 COG4257 Vgb Streptogramin lyas 96.4 0.63 1.4E-05 40.7 16.9 187 106-314 123-313 (353)
73 PF08450 SGL: SMP-30/Gluconola 96.2 0.46 1E-05 41.7 16.7 193 97-314 11-221 (246)
74 PF08268 FBA_3: F-box associat 96.2 0.13 2.9E-06 40.2 11.7 80 231-314 2-88 (129)
75 PRK04792 tolB translocation pr 96.1 1.4 3.1E-05 42.5 23.0 147 154-315 241-391 (448)
76 PF05096 Glu_cyclase_2: Glutam 96.1 0.2 4.3E-06 43.9 13.1 159 141-316 54-216 (264)
77 PF12768 Rax2: Cortical protei 96.0 0.14 3E-06 45.7 12.0 110 153-268 14-130 (281)
78 KOG2055 WD40 repeat protein [G 96.0 0.28 6.1E-06 45.6 13.8 147 140-307 266-418 (514)
79 PRK00178 tolB translocation pr 95.7 2 4.4E-05 41.2 23.3 193 143-360 211-407 (430)
80 cd00216 PQQ_DH Dehydrogenases 95.6 2.5 5.5E-05 41.4 23.7 116 139-265 58-191 (488)
81 PF12217 End_beta_propel: Cata 95.4 1.6 3.4E-05 37.9 17.6 200 137-344 79-334 (367)
82 PRK05137 tolB translocation pr 95.2 3.1 6.7E-05 40.0 23.2 146 154-314 225-374 (435)
83 KOG2055 WD40 repeat protein [G 95.2 0.59 1.3E-05 43.6 13.0 160 186-373 224-386 (514)
84 KOG2997 F-box protein FBX9 [Ge 95.2 0.012 2.6E-07 51.9 2.2 44 46-89 106-154 (366)
85 PRK04922 tolB translocation pr 95.2 3.2 7E-05 39.9 23.1 182 154-360 227-412 (433)
86 PF10282 Lactonase: Lactonase, 95.1 2.8 6E-05 39.0 22.1 224 110-359 18-275 (345)
87 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 4 8.6E-05 40.4 24.3 115 139-264 66-196 (527)
88 PF07734 FBA_1: F-box associat 95.0 0.87 1.9E-05 37.2 12.7 83 231-315 2-92 (164)
89 TIGR02800 propeller_TolB tol-p 95.0 3.4 7.4E-05 39.3 23.3 146 155-315 214-363 (417)
90 PF06433 Me-amine-dh_H: Methyl 94.9 0.99 2.2E-05 41.1 13.4 224 108-360 68-321 (342)
91 TIGR03866 PQQ_ABC_repeats PQQ- 94.8 2.8 6E-05 37.4 20.3 141 145-309 3-148 (300)
92 KOG0310 Conserved WD40 repeat- 94.3 1 2.2E-05 42.2 12.4 259 46-345 34-301 (487)
93 COG3386 Gluconolactonase [Carb 94.2 4.3 9.2E-05 37.0 19.7 178 155-359 47-243 (307)
94 cd00200 WD40 WD40 domain, foun 94.2 3.4 7.4E-05 35.8 23.6 183 142-360 62-250 (289)
95 PRK11028 6-phosphogluconolacto 94.2 4.6 9.9E-05 37.1 25.8 257 97-387 46-327 (330)
96 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.2 6.5 0.00014 38.9 24.2 210 96-309 68-336 (527)
97 TIGR03866 PQQ_ABC_repeats PQQ- 93.5 5.2 0.00011 35.6 24.7 178 106-310 10-191 (300)
98 smart00284 OLF Olfactomedin-li 93.5 4.9 0.00011 35.3 17.4 181 142-341 34-242 (255)
99 COG4257 Vgb Streptogramin lyas 93.5 5.1 0.00011 35.3 19.9 187 155-374 124-314 (353)
100 PRK11028 6-phosphogluconolacto 93.3 6.4 0.00014 36.1 25.5 193 99-313 3-214 (330)
101 PLN00181 protein SPA1-RELATED; 93.3 9.2 0.0002 40.0 19.1 182 144-360 546-739 (793)
102 PF08268 FBA_3: F-box associat 93.1 1.5 3.3E-05 34.1 10.1 83 184-268 3-89 (129)
103 PRK04043 tolB translocation pr 93.0 8.7 0.00019 36.8 22.7 146 154-316 212-367 (419)
104 KOG0310 Conserved WD40 repeat- 92.9 8.6 0.00019 36.4 18.0 230 96-375 37-276 (487)
105 cd00200 WD40 WD40 domain, foun 92.7 6.1 0.00013 34.2 22.1 143 143-309 105-252 (289)
106 PRK03629 tolB translocation pr 92.4 11 0.00023 36.3 22.3 182 154-360 222-407 (429)
107 COG4946 Uncharacterized protei 92.0 12 0.00025 35.7 16.0 124 202-342 106-243 (668)
108 PF03178 CPSF_A: CPSF A subuni 91.8 10 0.00022 34.7 18.2 152 187-360 42-205 (321)
109 KOG0316 Conserved WD40 repeat- 91.7 8 0.00017 33.2 17.8 188 141-360 69-258 (307)
110 PF10282 Lactonase: Lactonase, 91.2 12 0.00027 34.6 19.6 185 156-359 16-222 (345)
111 TIGR02800 propeller_TolB tol-p 91.1 14 0.00031 35.0 22.0 138 203-360 214-355 (417)
112 PRK04922 tolB translocation pr 90.8 16 0.00035 35.1 21.1 139 202-360 227-369 (433)
113 KOG0649 WD40 repeat protein [G 90.7 10 0.00023 32.7 12.7 150 214-389 100-262 (325)
114 PF02191 OLF: Olfactomedin-lik 90.6 11 0.00025 33.1 16.9 181 142-342 30-238 (250)
115 KOG0315 G-protein beta subunit 90.5 11 0.00024 32.7 19.7 247 104-388 58-309 (311)
116 PF03178 CPSF_A: CPSF A subuni 90.2 3.8 8.3E-05 37.6 11.0 133 155-305 62-203 (321)
117 PRK00178 tolB translocation pr 89.9 19 0.00041 34.5 21.7 138 203-360 223-364 (430)
118 TIGR02658 TTQ_MADH_Hv methylam 89.7 17 0.00037 33.8 22.8 63 287-360 259-331 (352)
119 PRK04792 tolB translocation pr 89.6 21 0.00045 34.6 23.0 138 203-360 242-383 (448)
120 TIGR03074 PQQ_membr_DH membran 89.6 16 0.00034 37.9 15.5 32 229-267 189-222 (764)
121 KOG0293 WD40 repeat-containing 88.9 20 0.00044 33.5 22.2 135 156-314 292-431 (519)
122 PLN02919 haloacid dehalogenase 88.7 37 0.00081 36.8 18.1 154 142-309 694-891 (1057)
123 KOG1332 Vesicle coat complex C 88.6 15 0.00033 31.8 12.9 55 304-375 241-297 (299)
124 COG1520 FOG: WD40-like repeat 88.5 22 0.00047 33.3 24.1 203 139-374 65-279 (370)
125 PRK05137 tolB translocation pr 87.8 27 0.00058 33.6 23.0 147 154-315 181-331 (435)
126 KOG2048 WD40 repeat protein [G 87.1 34 0.00074 34.0 22.0 92 283-390 210-302 (691)
127 COG1520 FOG: WD40-like repeat 86.9 27 0.00058 32.7 26.6 241 96-360 67-321 (370)
128 KOG0291 WD40-repeat-containing 86.8 38 0.00083 34.3 18.2 146 187-360 319-467 (893)
129 PLN03215 ascorbic acid mannose 86.6 20 0.00043 33.5 12.8 110 260-382 189-311 (373)
130 PF14870 PSII_BNR: Photosynthe 86.5 25 0.00054 31.9 22.5 236 98-374 28-270 (302)
131 PF06433 Me-amine-dh_H: Methyl 86.2 11 0.00024 34.6 10.7 69 234-309 249-323 (342)
132 KOG0315 G-protein beta subunit 86.2 22 0.00048 31.0 19.3 194 140-360 49-246 (311)
133 COG3823 Glutamine cyclotransfe 85.6 21 0.00046 30.3 15.2 162 138-320 51-221 (262)
134 PTZ00421 coronin; Provisional 85.6 38 0.00083 33.2 18.9 105 142-262 87-201 (493)
135 PRK01742 tolB translocation pr 85.4 36 0.00077 32.7 18.8 140 154-314 227-369 (429)
136 COG4946 Uncharacterized protei 84.8 38 0.00082 32.4 21.8 207 84-313 264-484 (668)
137 PLN00181 protein SPA1-RELATED; 84.5 57 0.0012 34.2 22.9 145 142-308 587-740 (793)
138 PLN02919 haloacid dehalogenase 84.4 67 0.0014 35.0 29.2 243 97-361 579-890 (1057)
139 smart00284 OLF Olfactomedin-li 84.2 29 0.00062 30.6 16.9 156 186-360 34-209 (255)
140 KOG2321 WD40 repeat protein [G 83.3 27 0.00057 34.2 12.1 109 186-309 145-261 (703)
141 cd00094 HX Hemopexin-like repe 82.6 28 0.0006 29.2 17.3 58 287-360 110-176 (194)
142 PRK02889 tolB translocation pr 82.1 49 0.0011 31.7 25.0 146 154-314 219-368 (427)
143 KOG0316 Conserved WD40 repeat- 81.6 34 0.00074 29.6 13.0 138 154-310 38-177 (307)
144 cd00094 HX Hemopexin-like repe 80.8 33 0.00071 28.8 17.7 148 138-309 12-178 (194)
145 KOG0266 WD40 repeat-containing 79.6 63 0.0014 31.4 18.7 184 141-360 213-410 (456)
146 PRK03629 tolB translocation pr 79.5 60 0.0013 31.2 21.8 138 203-360 223-364 (429)
147 PRK04043 tolB translocation pr 78.2 66 0.0014 30.8 21.0 185 106-309 212-403 (419)
148 PF09910 DUF2139: Uncharacteri 77.6 54 0.0012 29.5 21.3 143 155-308 78-232 (339)
149 KOG2048 WD40 repeat protein [G 76.0 90 0.0019 31.2 13.5 105 202-314 402-513 (691)
150 PRK02889 tolB translocation pr 75.8 77 0.0017 30.4 23.0 183 154-360 175-361 (427)
151 KOG4378 Nuclear protein COP1 [ 74.8 62 0.0014 31.2 11.5 86 205-307 189-281 (673)
152 KOG4378 Nuclear protein COP1 [ 74.1 80 0.0017 30.5 12.1 31 280-310 213-243 (673)
153 KOG0289 mRNA splicing factor [ 72.7 88 0.0019 29.6 17.2 115 186-319 358-475 (506)
154 KOG0274 Cdc4 and related F-box 72.4 1.1E+02 0.0023 30.5 18.1 146 183-360 337-483 (537)
155 KOG0281 Beta-TrCP (transducin 72.1 74 0.0016 29.2 10.9 112 176-308 319-430 (499)
156 KOG2321 WD40 repeat protein [G 71.8 29 0.00064 33.9 8.9 107 143-265 146-264 (703)
157 PF02897 Peptidase_S9_N: Proly 71.3 95 0.0021 29.5 18.4 143 155-314 252-412 (414)
158 PRK13684 Ycf48-like protein; P 70.7 89 0.0019 28.9 23.4 185 143-360 143-332 (334)
159 TIGR03074 PQQ_membr_DH membran 69.5 1.5E+02 0.0032 31.0 26.0 209 97-309 194-480 (764)
160 COG3823 Glutamine cyclotransfe 68.8 65 0.0014 27.5 9.2 99 229-344 50-150 (262)
161 PTZ00420 coronin; Provisional 68.3 1.4E+02 0.0029 30.0 17.1 151 144-314 139-301 (568)
162 PF02897 Peptidase_S9_N: Proly 67.8 1.1E+02 0.0024 28.9 20.1 139 202-360 251-405 (414)
163 KOG0286 G-protein beta subunit 67.2 95 0.0021 27.9 12.0 111 234-360 108-218 (343)
164 KOG4649 PQQ (pyrrolo-quinoline 65.8 97 0.0021 27.4 12.2 104 230-360 16-124 (354)
165 PRK01742 tolB translocation pr 65.6 1.3E+02 0.0028 28.8 16.7 139 107-267 228-369 (429)
166 KOG0296 Angio-associated migra 65.5 1.1E+02 0.0025 28.2 18.7 143 142-309 75-223 (399)
167 PRK10115 protease 2; Provision 64.1 1.8E+02 0.0039 30.0 17.8 150 153-315 245-403 (686)
168 PF13859 BNR_3: BNR repeat-lik 63.4 1.2E+02 0.0026 27.7 13.0 184 180-376 2-217 (310)
169 TIGR03032 conserved hypothetic 62.6 23 0.0005 32.1 5.9 50 285-342 210-259 (335)
170 TIGR02658 TTQ_MADH_Hv methylam 58.4 1.6E+02 0.0035 27.5 25.4 110 97-217 12-142 (352)
171 KOG0296 Angio-associated migra 58.0 1.6E+02 0.0034 27.3 15.4 143 186-360 75-221 (399)
172 PRK13684 Ycf48-like protein; P 57.0 1.6E+02 0.0035 27.1 26.1 175 142-343 99-279 (334)
173 PF03022 MRJP: Major royal jel 56.6 1.5E+02 0.0033 26.7 11.7 82 234-315 11-106 (287)
174 KOG0278 Serine/threonine kinas 56.6 1.4E+02 0.003 26.2 12.3 123 203-345 165-289 (334)
175 PTZ00421 coronin; Provisional 56.2 2.1E+02 0.0045 28.2 22.9 154 143-313 138-297 (493)
176 PF14870 PSII_BNR: Photosynthe 55.4 1.7E+02 0.0036 26.7 16.9 173 142-341 27-204 (302)
177 smart00564 PQQ beta-propeller 55.0 31 0.00067 18.9 3.8 28 332-370 4-31 (33)
178 PF13570 PQQ_3: PQQ-like domai 54.4 24 0.00052 20.7 3.4 24 330-360 17-40 (40)
179 KOG0282 mRNA splicing factor [ 54.3 1.4E+02 0.003 28.7 9.6 61 187-262 270-333 (503)
180 KOG0292 Vesicle coat complex C 53.7 2.9E+02 0.0064 29.1 13.3 136 144-314 219-356 (1202)
181 KOG0649 WD40 repeat protein [G 53.0 1.6E+02 0.0034 25.8 15.2 138 141-304 125-272 (325)
182 KOG4649 PQQ (pyrrolo-quinoline 52.7 1.7E+02 0.0036 26.0 13.1 102 186-309 21-126 (354)
183 KOG1036 Mitotic spindle checkp 51.9 1.8E+02 0.004 26.2 12.8 138 143-308 26-165 (323)
184 KOG4341 F-box protein containi 51.6 11 0.00024 35.5 2.2 39 47-85 72-110 (483)
185 KOG0278 Serine/threonine kinas 51.5 1.7E+02 0.0037 25.7 15.2 130 153-304 163-295 (334)
186 PF15492 Nbas_N: Neuroblastoma 50.8 1.8E+02 0.004 25.9 12.2 34 336-377 160-193 (282)
187 KOG2106 Uncharacterized conser 48.8 2.7E+02 0.0058 27.2 21.0 96 96-196 211-307 (626)
188 PF07734 FBA_1: F-box associat 48.8 1.4E+02 0.0031 24.0 11.4 84 183-270 2-94 (164)
189 PF13013 F-box-like_2: F-box-l 48.4 27 0.00059 26.2 3.5 29 47-75 22-50 (109)
190 KOG0291 WD40-repeat-containing 47.6 3.4E+02 0.0073 28.0 24.2 193 143-375 319-517 (893)
191 PTZ00420 coronin; Provisional 47.3 3.1E+02 0.0067 27.6 20.2 68 286-360 177-249 (568)
192 PF11768 DUF3312: Protein of u 46.8 1.5E+02 0.0032 29.3 9.0 104 235-359 219-329 (545)
193 PF14583 Pectate_lyase22: Olig 46.4 1.6E+02 0.0036 27.7 8.9 86 202-296 215-302 (386)
194 KOG3926 F-box proteins [Amino 45.3 17 0.00037 31.9 2.3 43 41-83 196-239 (332)
195 PF03088 Str_synth: Strictosid 44.9 51 0.0011 23.8 4.4 19 296-314 35-53 (89)
196 COG0823 TolB Periplasmic compo 44.0 3E+02 0.0066 26.5 14.6 104 202-315 261-368 (425)
197 KOG0641 WD40 repeat protein [G 42.9 2.2E+02 0.0048 24.5 13.0 109 186-309 151-264 (350)
198 PF15525 DUF4652: Domain of un 42.8 2E+02 0.0043 24.0 10.6 72 155-226 88-163 (200)
199 KOG0282 mRNA splicing factor [ 40.9 1.2E+02 0.0027 29.0 7.2 84 287-384 269-360 (503)
200 KOG0286 G-protein beta subunit 40.7 2.8E+02 0.006 25.1 19.2 189 140-359 106-303 (343)
201 PLN00033 photosystem II stabil 40.5 3.3E+02 0.0072 25.9 23.0 52 286-342 337-389 (398)
202 KOG0772 Uncharacterized conser 40.3 3.7E+02 0.008 26.4 14.2 89 278-375 317-409 (641)
203 PF04616 Glyco_hydro_43: Glyco 40.2 2.6E+02 0.0057 24.6 15.2 162 176-342 9-197 (286)
204 KOG3881 Uncharacterized conser 39.3 3.3E+02 0.0072 25.6 11.4 147 188-360 162-321 (412)
205 PF14781 BBS2_N: Ciliary BBSom 39.2 1.5E+02 0.0033 23.3 6.4 62 289-373 65-135 (136)
206 KOG1446 Histone H3 (Lys4) meth 38.9 3E+02 0.0065 24.9 23.8 109 98-217 27-136 (311)
207 KOG0772 Uncharacterized conser 38.9 3.9E+02 0.0084 26.2 15.2 120 225-359 317-445 (641)
208 KOG1036 Mitotic spindle checkp 38.6 3E+02 0.0066 24.9 11.8 129 204-361 36-165 (323)
209 KOG0318 WD40 repeat stress pro 38.3 2.6E+02 0.0056 27.4 8.9 112 180-307 448-561 (603)
210 KOG1332 Vesicle coat complex C 36.9 2.9E+02 0.0064 24.3 13.4 32 284-315 264-296 (299)
211 PF02191 OLF: Olfactomedin-lik 36.1 3E+02 0.0066 24.2 16.8 154 138-305 74-246 (250)
212 KOG1446 Histone H3 (Lys4) meth 35.1 3.5E+02 0.0075 24.6 18.2 17 153-169 34-50 (311)
213 KOG0640 mRNA cleavage stimulat 35.0 2.9E+02 0.0063 25.1 8.2 93 252-360 239-336 (430)
214 PF07433 DUF1513: Protein of u 34.2 3.6E+02 0.0079 24.5 10.6 109 221-342 1-118 (305)
215 KOG0263 Transcription initiati 34.1 3.9E+02 0.0085 27.3 9.8 107 232-360 543-650 (707)
216 KOG0263 Transcription initiati 34.0 5.4E+02 0.012 26.4 12.5 106 184-307 543-650 (707)
217 COG2706 3-carboxymuconate cycl 33.5 3.9E+02 0.0085 24.7 26.0 241 98-360 52-324 (346)
218 PF15525 DUF4652: Domain of un 33.4 2.9E+02 0.0063 23.1 11.2 71 201-271 86-160 (200)
219 PF08662 eIF2A: Eukaryotic tra 33.4 2.9E+02 0.0062 23.1 9.8 65 142-213 71-135 (194)
220 PF01011 PQQ: PQQ enzyme repea 32.6 1E+02 0.0022 17.7 4.3 25 289-314 2-28 (38)
221 PF12217 End_beta_propel: Cata 31.0 3.8E+02 0.0083 23.8 14.6 154 179-342 77-257 (367)
222 KOG1897 Damage-specific DNA bi 30.5 7.1E+02 0.015 26.8 15.6 138 187-345 787-934 (1096)
223 PF09910 DUF2139: Uncharacteri 28.3 4.6E+02 0.0099 23.9 18.3 96 202-310 77-185 (339)
224 KOG4499 Ca2+-binding protein R 28.0 4.2E+02 0.009 23.3 8.8 35 286-320 221-255 (310)
225 KOG0265 U5 snRNP-specific prot 27.7 4.7E+02 0.01 23.8 11.3 140 186-358 58-203 (338)
226 KOG0294 WD40 repeat-containing 27.3 4.9E+02 0.011 23.8 13.8 28 181-214 47-74 (362)
227 KOG0266 WD40 repeat-containing 26.6 5.9E+02 0.013 24.6 18.3 150 141-308 256-411 (456)
228 KOG2502 Tub family proteins [G 26.6 69 0.0015 29.4 3.1 39 45-83 43-89 (355)
229 PF13859 BNR_3: BNR repeat-lik 25.5 5.2E+02 0.011 23.6 11.4 151 228-383 2-176 (310)
230 PTZ00486 apyrase Superfamily; 25.2 5.6E+02 0.012 23.8 10.3 56 282-339 119-178 (352)
231 KOG0646 WD40 repeat protein [G 24.6 6.4E+02 0.014 24.3 14.6 23 332-360 286-308 (476)
232 PF08662 eIF2A: Eukaryotic tra 24.3 4.2E+02 0.0091 22.1 9.2 68 234-316 71-141 (194)
233 PF02239 Cytochrom_D1: Cytochr 23.8 6.1E+02 0.013 23.8 12.0 137 154-308 15-160 (369)
234 KOG1188 WD40 repeat protein [G 23.3 3.2E+02 0.0069 25.2 6.6 74 289-373 41-116 (376)
235 KOG0640 mRNA cleavage stimulat 23.2 3.8E+02 0.0082 24.5 6.9 57 285-345 225-283 (430)
236 KOG0639 Transducin-like enhanc 23.2 3.4E+02 0.0075 26.5 7.0 67 234-309 476-542 (705)
237 COG0823 TolB Periplasmic compo 23.2 6.8E+02 0.015 24.1 16.8 109 153-269 260-369 (425)
238 KOG0299 U3 snoRNP-associated p 23.1 6.9E+02 0.015 24.1 17.9 145 139-309 210-359 (479)
239 KOG0639 Transducin-like enhanc 22.7 7.4E+02 0.016 24.3 10.7 97 139-245 473-573 (705)
240 KOG0272 U4/U6 small nuclear ri 22.7 6.8E+02 0.015 23.9 20.4 123 233-385 313-436 (459)
241 KOG1445 Tumor-specific antigen 22.5 6.6E+02 0.014 25.5 8.9 103 203-308 742-846 (1012)
242 TIGR03032 conserved hypothetic 22.5 2.3E+02 0.0051 25.9 5.6 100 174-295 148-259 (335)
243 KOG2445 Nuclear pore complex c 22.4 6E+02 0.013 23.2 10.5 31 288-318 184-221 (361)
244 PF13088 BNR_2: BNR repeat-lik 22.3 5.3E+02 0.011 22.5 11.3 147 184-339 116-275 (275)
245 PF01436 NHL: NHL repeat; Int 22.3 1.4E+02 0.003 15.8 3.2 18 286-303 11-28 (28)
246 PF09372 PRANC: PRANC domain; 22.2 54 0.0012 23.9 1.4 26 44-69 69-94 (97)
247 TIGR02276 beta_rpt_yvtn 40-res 22.1 1.7E+02 0.0037 16.7 4.4 24 287-310 3-26 (42)
248 KOG0289 mRNA splicing factor [ 22.0 7.1E+02 0.015 23.9 16.7 113 142-271 358-474 (506)
249 COG4880 Secreted protein conta 22.0 7.2E+02 0.016 23.9 13.4 54 153-211 404-457 (603)
250 KOG0306 WD40-repeat-containing 20.8 9.6E+02 0.021 24.9 16.2 181 140-345 381-572 (888)
251 PF11768 DUF3312: Protein of u 20.5 8.5E+02 0.019 24.2 11.3 109 186-309 218-332 (545)
252 PRK02888 nitrous-oxide reducta 20.4 9.2E+02 0.02 24.6 13.5 54 298-360 296-352 (635)
253 KOG3545 Olfactomedin and relat 20.3 6E+02 0.013 22.4 14.7 158 205-386 12-181 (249)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.3e-46 Score=362.70 Aligned_cols=350 Identities=24% Similarity=0.330 Sum_probs=273.3
Q ss_pred HHHHHh-hcceeeccccccCCCCCCCCCCCCCCCCChHHHHHHHhhhcccc--chhhhHhhc--HHHHHHhhcCC-chhh
Q 016421 16 KEEEEA-ASLSVVSWKAGVNDGCCRIGPSDSLLPGLVDDVALNCLAFACTS--DYASLLFIN--KRFHKLIKSGY-LYGL 89 (390)
Q Consensus 16 ~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~LP~dl~~~iL~rlp~~--~l~~~~~V~--k~w~~l~~s~~-~~~~ 89 (390)
+|++.+ +.+.+...+......--..-.....+|.||...+.+++...+.- +......+. +++..+-.... ....
T Consensus 196 ~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~ 275 (571)
T KOG4441|consen 196 SEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSP 275 (571)
T ss_pred CHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCC
Confidence 444434 55555555544321111122233456899999998888887721 111111111 22322221111 2222
Q ss_pred hhhcC-ccccEEEEEeC-------CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc----cCCeE
Q 016421 90 RKQLG-IVEHWVYLVCD-------PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL----FDFAI 157 (390)
Q Consensus 90 r~~~~-~~~~~l~~~~~-------~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~----~~~~~ 157 (390)
+.+.. .....|+++|| ...+.+|||.++.|..+++||.++.. .++++.++.||++||.+ ..+.+
T Consensus 276 ~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~----~~~~~~~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 276 RTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCR----VGVAVLNGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CcccCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccc----ccEEEECCEEEEEccccCCCcccceE
Confidence 32222 34678888886 35688999999999999999987652 45788899999999987 34789
Q ss_pred EEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEE
Q 016421 158 WKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKF 237 (390)
Q Consensus 158 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~i 237 (390)
++|||.+++|..+++|+.+|..+++++++|+||++||.++.. .++++++|||.+++|..+++|+.+|+++++++++|+|
T Consensus 352 e~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL 430 (571)
T ss_pred EEecCCCCceeccCCccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence 999999999999999999999999999999999999999654 6899999999999999999999999999999999999
Q ss_pred EEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEE
Q 016421 238 YVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDV 312 (390)
Q Consensus 238 yv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~ 312 (390)
|++||.++....++++++|||.+++|+.+++|+. .|.++++++++++||++||. ...+++|||++++|+.
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-----~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-----RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCccc-----ccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 9999998876689999999999999999999999 55666799999999999984 3569999999999999
Q ss_pred ccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeeee
Q 016421 313 LGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~ 388 (390)
+++|+.++.. +++++++++||++||+++.. ....|.+|||++ ++|+.... |...+...+|+++
T Consensus 506 v~~m~~~rs~-----~g~~~~~~~ly~vGG~~~~~-~l~~ve~ydp~~------d~W~~~~~-~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 506 VAPMTSPRSA-----VGVVVLGGKLYAVGGFDGNN-NLNTVECYDPET------DTWTEVTE-PESGRGGAGVAVI 568 (571)
T ss_pred cccCcccccc-----ccEEEECCEEEEEecccCcc-ccceeEEcCCCC------CceeeCCC-ccccccCcceEEe
Confidence 9999887653 56788999999999987654 456799999999 89999999 6777777777665
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=338.28 Aligned_cols=243 Identities=16% Similarity=0.299 Sum_probs=211.0
Q ss_pred eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc----cCCeEEEEECCCCcEeecCCCCCCCcceeee
Q 016421 108 GWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL----FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG 183 (390)
Q Consensus 108 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~----~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 183 (390)
.+++|||.+++|..+++||.++.. +++++.++.||++||.. ..+.+++|||.+++|..+++||.+|..++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~----~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN----YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc----eEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 578999999999999999987642 45678899999999964 2467999999999999999999999999999
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCC----------------
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPT---------------- 247 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---------------- 247 (390)
+++++||++||.++.. ..+++++|||.+++|+.+++||.+|..+++++++|+||++||.+...
T Consensus 349 ~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 349 VIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 9999999999986543 46889999999999999999999999999999999999999986421
Q ss_pred -ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC------CeEEEEeCCC-CceEEccCCCcc
Q 016421 248 -VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT------NMVKKYDKLK-NTWDVLGRLPVR 319 (390)
Q Consensus 248 -~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~------~~v~~yd~~~-~~W~~v~~~~~~ 319 (390)
...+.+++|||.+++|+.+++|+. +|..+++++++|+||++||.. ..+++|||++ ++|+.+++||.+
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~-----~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWT-----GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCc-----ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 125789999999999999999988 455667999999999999853 4589999999 899999999987
Q ss_pred ccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 320 ADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 320 ~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
+.. +++++++|+||++||.++. ..+++||+.+ ++|+.+.+.
T Consensus 503 r~~-----~~~~~~~~~iyv~Gg~~~~----~~~e~yd~~~------~~W~~~~~~ 543 (557)
T PHA02713 503 LSA-----LHTILHDNTIMMLHCYESY----MLQDTFNVYT------YEWNHICHQ 543 (557)
T ss_pred ccc-----ceeEEECCEEEEEeeecce----eehhhcCccc------ccccchhhh
Confidence 653 5678899999999998863 3689999999 899999876
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.7e-39 Score=311.22 Aligned_cols=231 Identities=26% Similarity=0.404 Sum_probs=205.1
Q ss_pred EeCCEEEEEccccc----CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 140 AVGSELLVFGRELF----DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~----~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
...+.||++||... ...+..|||.+++|..+.+||.+|..+++++++++||++||.+.....++++++||+.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45678999999764 47889999999999999999999999999999999999999984334689999999999999
Q ss_pred EEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 216 EMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
..+++|..+|..+++++++|.||++||.++.. .++++++|||.+++|+.+++|+. .|.++++++++|+||++||
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m~~-----~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPMLT-----RRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCCCCc-----ceeeeEEEEECCEEEEEcC
Confidence 99999999999999999999999999999644 68899999999999999999998 5667789999999999998
Q ss_pred ------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCce
Q 016421 296 ------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDW 369 (390)
Q Consensus 296 ------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W 369 (390)
..+++++|||.+++|+.+++|+..+.. +++++++++||++||.++ ......|++|||.+ ++|
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-----~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~------~~W 503 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-----FGVAVLNGKIYVVGGFDG-TSALSSVERYDPET------NQW 503 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCccccccc-----ceEEEECCEEEEECCccC-CCccceEEEEcCCC------Cce
Confidence 557999999999999999999988753 568899999999999998 44556699999999 899
Q ss_pred EEecccCccCeEEeeeeee
Q 016421 370 KVLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 370 ~~~~~~p~~~~~~~~~~~~ 388 (390)
+.+.+|+..+..+..+++.
T Consensus 504 ~~v~~m~~~rs~~g~~~~~ 522 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVVLG 522 (571)
T ss_pred eEcccCccccccccEEEEC
Confidence 9999997777666666543
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.6e-37 Score=303.35 Aligned_cols=250 Identities=20% Similarity=0.247 Sum_probs=209.8
Q ss_pred eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccccc----CCeEEEEECCCCcEeecCCCCCCCcceeee
Q 016421 108 GWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF----DFAIWKYSLVFRSWMKCEGMNHPRCLFGSG 183 (390)
Q Consensus 108 ~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~----~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 183 (390)
....|++..++|..++..+... .+++++.++.||++||... .++++.||+.+++|..++++|.+|..++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~ 339 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY-----CFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT 339 (534)
T ss_pred eeeecchhhhhcccccCccccc-----cceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE
Confidence 4456888888898887655322 1346788999999999652 357899999999999999999999999999
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
+++++||++||.... ...+++++||+.+++|+.+++||.+|..++++.++++||++||.......++.+++||+.+++|
T Consensus 340 ~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 340 VFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred EECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 999999999998743 3578899999999999999999999999999999999999999765444578899999999999
Q ss_pred EEccCCCCCCCCcCCCCCEEEEECCEEEEEecC--------CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCC
Q 016421 264 RKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL--------TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGN 335 (390)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~--------~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~ 335 (390)
+.++++|. ++..+++++.+++||++||. .+.+++||+.+++|+.++.++.++. +++++++++
T Consensus 419 ~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~-----~~~~~~~~~ 488 (534)
T PHA03098 419 SKGSPLPI-----SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI-----NASLCIFNN 488 (534)
T ss_pred eecCCCCc-----cccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc-----cceEEEECC
Confidence 99999887 45566788999999999984 2459999999999999998886653 245677899
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCe
Q 016421 336 ELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGV 380 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~ 380 (390)
+||++||..... ...++++||+++ ++|+.++.+|+...
T Consensus 489 ~iyv~GG~~~~~-~~~~v~~yd~~~------~~W~~~~~~p~~~~ 526 (534)
T PHA03098 489 KIYVVGGDKYEY-YINEIEVYDDKT------NTWTLFCKFPKVIG 526 (534)
T ss_pred EEEEEcCCcCCc-ccceeEEEeCCC------CEEEecCCCccccc
Confidence 999999987543 356799999999 89999998876543
No 5
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-37 Score=297.88 Aligned_cols=219 Identities=17% Similarity=0.213 Sum_probs=187.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEEC
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMD 234 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 234 (390)
..+++|||.+++|..+++||.+|..+++++++++||++||........+++++||+.+++|..+++|+.+|..+++++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46799999999999999999999999999999999999998633335788999999999999999999999999999999
Q ss_pred CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC------------------
Q 016421 235 GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL------------------ 296 (390)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~------------------ 296 (390)
|+||++||.++.. ..+++++||+.+++|+.+++||. ++..+++++++|+||++||.
T Consensus 352 g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~-----~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 352 DTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPI-----ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCc-----ccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 9999999986543 46789999999999999999998 45566788999999999984
Q ss_pred -----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 297 -----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 297 -----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
.+.+++|||++++|+.+++|+.++.. +++++++|+||++||.++.......+++|||+++ ++|+.
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-----~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-----~~W~~ 495 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-----PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-----NGWEL 495 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCccccc-----CcEEEECCEEEEEeCCCCCCccceeEEEecCCCC-----CCeeE
Confidence 35799999999999999999887643 5678899999999998754444456899999872 38999
Q ss_pred ecccCccCeEEeeeeeec
Q 016421 372 LAEKQHVGVFVYNCAVLG 389 (390)
Q Consensus 372 ~~~~p~~~~~~~~~~~~~ 389 (390)
+++||..+..+..+++.|
T Consensus 496 ~~~m~~~r~~~~~~~~~~ 513 (557)
T PHA02713 496 ITTTESRLSALHTILHDN 513 (557)
T ss_pred ccccCcccccceeEEECC
Confidence 999988776666555544
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=5.5e-36 Score=277.25 Aligned_cols=242 Identities=21% Similarity=0.376 Sum_probs=190.8
Q ss_pred cCCCceeeCCC----CCCCcccCCCCeeEEEeCCEEEEEccccc-----CCeEEEEECCCCcEeecCCCC-CCC---cce
Q 016421 114 PMKKKWMALPK----IPCDECFNHADKESLAVGSELLVFGRELF-----DFAIWKYSLVFRSWMKCEGMN-HPR---CLF 180 (390)
Q Consensus 114 ~~~~~W~~l~~----~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~-----~~~~~~yd~~t~~W~~~~~~~-~~r---~~~ 180 (390)
+...+|.+++. +|.++. .++++++++.||++||... .+++++||+.+++|..+++++ .+| ..+
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~----~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRC----SHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCC----cceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 35677998876 565554 2456788999999999742 358999999999999987753 343 367
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC-----CCCCcCceEEEECCEEEEEecccCCC-----ccC
Q 016421 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM-----HSPRRLCSGFFMDGKFYVIGGMSSPT-----VSL 250 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~ 250 (390)
++++++++||++||..... ..+++++||+.+++|+.+++| |.+|..|++++++++|||+||.+... ..+
T Consensus 80 ~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence 8889999999999986543 467899999999999999877 77899999999999999999986422 135
Q ss_pred ceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-------------CCeEEEEeCCCCceEEccC--
Q 016421 251 TCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-------------TNMVKKYDKLKNTWDVLGR-- 315 (390)
Q Consensus 251 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-------------~~~v~~yd~~~~~W~~v~~-- 315 (390)
+++++||+.+++|+.++++.... ..|..+.+++++++||++||. .+++++||+++++|++++.
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGENF--EKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCCCC--CCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 68999999999999988764211 146667788999999999863 3679999999999999875
Q ss_pred -CCccccCCCcceeEEEEeCCEEEEEcCCCC--------CCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 316 -LPVRADLSNGWGLAFKACGNELLVVGGQRG--------PEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 316 -~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~--------~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
+|.++. ++++++++++|||+||... .....+++++||+++ ++|+.+.
T Consensus 237 ~~P~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~------~~W~~~~ 292 (341)
T PLN02153 237 AKPSARS-----VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET------LVWEKLG 292 (341)
T ss_pred CCCCCcc-----eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc------cEEEecc
Confidence 344332 3677889999999999742 122345899999999 8999986
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3.2e-36 Score=278.79 Aligned_cols=275 Identities=22% Similarity=0.281 Sum_probs=206.4
Q ss_pred HHHHhhcC-CchhhhhhcCc--cccEEEEEeCC--------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEE
Q 016421 77 FHKLIKSG-YLYGLRKQLGI--VEHWVYLVCDP--------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSEL 145 (390)
Q Consensus 77 w~~l~~s~-~~~~~r~~~~~--~~~~l~~~~~~--------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~i 145 (390)
|..+-... ..+..|..+.. ..+.||++||. .+++.||+.+++|..+++++..+......+.+++++++|
T Consensus 9 W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~i 88 (341)
T PLN02153 9 WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKL 88 (341)
T ss_pred EEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEE
Confidence 55444322 13334444333 37899999863 468999999999999887753222222234577889999
Q ss_pred EEEcccc---cCCeEEEEECCCCcEeecCCC-----CCCCcceeeeeeCCEEEEEeccCCCC-----CccceEEEEECCC
Q 016421 146 LVFGREL---FDFAIWKYSLVFRSWMKCEGM-----NHPRCLFGSGSLGSIAIIAGGSDKNG-----HVLKSAELYDSTT 212 (390)
Q Consensus 146 y~~Gg~~---~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~~~~yd~~t 212 (390)
|++||.. ..+++++||+.+++|+.++++ |.+|..|++++++++|||+||..... ...+++++||+.+
T Consensus 89 yv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~ 168 (341)
T PLN02153 89 YIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD 168 (341)
T ss_pred EEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCC
Confidence 9999964 235899999999999998876 78899999999999999999986432 1356899999999
Q ss_pred CcEEEcCCCC---CCCcCceEEEECCEEEEEecccCC-------CccCceEEEEeCCCCceEEccCC---CCCCCCcCCC
Q 016421 213 GRWEMLPSMH---SPRRLCSGFFMDGKFYVIGGMSSP-------TVSLTCGEEFDLETRKWRKIEGM---YPNVNRAAQA 279 (390)
Q Consensus 213 ~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~~~ 279 (390)
++|+.++++. .+|..+++++++++||++||.... ....+.+++||+.+++|+++... |. +|.
T Consensus 169 ~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~-----~r~ 243 (341)
T PLN02153 169 GKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS-----ARS 243 (341)
T ss_pred CeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC-----Ccc
Confidence 9999998764 678888889999999999986421 12357899999999999998753 33 456
Q ss_pred CCEEEEECCEEEEEecC--------------CCeEEEEeCCCCceEEccC-----CCccccCCCcceeEEEEeCCEEEEE
Q 016421 280 PPLVAVVDNQLYAVEYL--------------TNMVKKYDKLKNTWDVLGR-----LPVRADLSNGWGLAFKACGNELLVV 340 (390)
Q Consensus 280 ~~~~~~~~g~l~v~gg~--------------~~~v~~yd~~~~~W~~v~~-----~~~~~~~~~~~~~~~~~~~~~lyv~ 340 (390)
.+.+++++++||++||. .+++++||+++++|+.+.. +|..+. +.+++.+..+++|||+
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~---~~~~~~v~~~~~~~~~ 320 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT---AYTTATVYGKNGLLMH 320 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc---cccccccCCcceEEEE
Confidence 66788999999999995 2489999999999999863 333222 2233433445689999
Q ss_pred cCCCCCCCCeEEEeeecCC
Q 016421 341 GGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 341 GG~~~~~~~~~~i~~y~~~ 359 (390)
||.........++++|+..
T Consensus 321 gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 321 GGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cCcCCCCccccceEEEecc
Confidence 9998766667889999764
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=282.82 Aligned_cols=208 Identities=20% Similarity=0.287 Sum_probs=180.6
Q ss_pred EEeCCEEEEEcccc---cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 139 LAVGSELLVFGREL---FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~---~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
+..++.||++||.. ..+.++.|||.+++|..+++|+.+|..+++++++++||++||.+. .++++.||+.+++|
T Consensus 268 ~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W 343 (480)
T PHA02790 268 THVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAW 343 (480)
T ss_pred EEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----CCceEEEECCCCeE
Confidence 45899999999964 336789999999999999999999999999999999999999753 25689999999999
Q ss_pred EEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 216 EMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
..+++||.+|..+++++++|+||++||.+.. .+.+++|||.+++|+.+++|+. +|..+++++++|+||++||
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~-----~r~~~~~~~~~~~IYv~GG 415 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYY-----PHYKSCALVFGRRLFLVGR 415 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCC-----ccccceEEEECCEEEEECC
Confidence 9999999999999999999999999998642 3678999999999999999987 4556678899999999997
Q ss_pred CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 296 LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 296 ~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.+++||+++++|+.+++|+.++.. +++++++|+||++||.++.. ....+++|||++ ++|+...
T Consensus 416 ---~~e~ydp~~~~W~~~~~m~~~r~~-----~~~~v~~~~IYviGG~~~~~-~~~~ve~Yd~~~------~~W~~~~ 478 (480)
T PHA02790 416 ---NAEFYCESSNTWTLIDDPIYPRDN-----PELIIVDNKLLLIGGFYRGS-YIDTIEVYNNRT------YSWNIWD 478 (480)
T ss_pred ---ceEEecCCCCcEeEcCCCCCCccc-----cEEEEECCEEEEECCcCCCc-ccceEEEEECCC------CeEEecC
Confidence 378999999999999999876642 56778999999999987433 346799999999 8998754
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6e-35 Score=271.25 Aligned_cols=253 Identities=18% Similarity=0.213 Sum_probs=195.1
Q ss_pred cccEEEEEeCC--CeeEEEec--CCCceeeCCCCCC-CcccCCCCeeEEEeCCEEEEEccccc---------CCeEEEEE
Q 016421 96 VEHWVYLVCDP--RGWEAFDP--MKKKWMALPKIPC-DECFNHADKESLAVGSELLVFGRELF---------DFAIWKYS 161 (390)
Q Consensus 96 ~~~~l~~~~~~--~~~~~~d~--~~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~iy~~Gg~~~---------~~~~~~yd 161 (390)
..+.||++||. ..++.||+ .+++|..+++||. ++. .+.++++++.||++||... .+++++||
T Consensus 16 ~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~----~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd 91 (346)
T TIGR03547 16 IGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRN----QAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYD 91 (346)
T ss_pred ECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcc----cceEEEECCEEEEEeCCCCCCCCCcceecccEEEEE
Confidence 47889999874 67889996 5788999999984 443 2356788999999999642 35799999
Q ss_pred CCCCcEeecC-CCCCCCcceeee-eeCCEEEEEeccCCCC---------------------------------CccceEE
Q 016421 162 LVFRSWMKCE-GMNHPRCLFGSG-SLGSIAIIAGGSDKNG---------------------------------HVLKSAE 206 (390)
Q Consensus 162 ~~t~~W~~~~-~~~~~r~~~~~~-~~~~~lyv~GG~~~~~---------------------------------~~~~~~~ 206 (390)
|.+++|+.++ ++|..|..++++ +++++||++||.+... ...++++
T Consensus 92 ~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (346)
T TIGR03547 92 PKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVL 171 (346)
T ss_pred CCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEE
Confidence 9999999987 355566666555 6899999999976320 0137899
Q ss_pred EEECCCCcEEEcCCCCC-CCcCceEEEECCEEEEEecccCCCccCceEEEEe--CCCCceEEccCCCCCCCC--cCCCCC
Q 016421 207 LYDSTTGRWEMLPSMHS-PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFD--LETRKWRKIEGMYPNVNR--AAQAPP 281 (390)
Q Consensus 207 ~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~~~~--~~~~~~ 281 (390)
+||+.+++|+.+++||. +|..++++.++++||++||..........++.|| +.+++|+.+++|+.++.. ..+..+
T Consensus 172 ~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~ 251 (346)
T TIGR03547 172 SYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGA 251 (346)
T ss_pred EEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEE
Confidence 99999999999999996 6888888899999999999865432334455554 577899999999875321 122344
Q ss_pred EEEEECCEEEEEecCC----------------------CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEE
Q 016421 282 LVAVVDNQLYAVEYLT----------------------NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLV 339 (390)
Q Consensus 282 ~~~~~~g~l~v~gg~~----------------------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv 339 (390)
.+++++|+||++||.. ..+++||+++++|+.+.+||.++. .+++++++++|||
T Consensus 252 ~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~-----~~~~~~~~~~iyv 326 (346)
T TIGR03547 252 FAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLA-----YGVSVSWNNGVLL 326 (346)
T ss_pred eeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCce-----eeEEEEcCCEEEE
Confidence 5778999999999852 268899999999999999987653 2456788999999
Q ss_pred EcCCCCCCCCeEEEeeec
Q 016421 340 VGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 340 ~GG~~~~~~~~~~i~~y~ 357 (390)
+||.........+|+.+.
T Consensus 327 ~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 327 IGGENSGGKAVTDVYLLS 344 (346)
T ss_pred EeccCCCCCEeeeEEEEE
Confidence 999887666677776653
No 10
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8e-35 Score=279.10 Aligned_cols=281 Identities=17% Similarity=0.203 Sum_probs=211.9
Q ss_pred HHHHHHhhcCCchhhhhhcCc--cccEEEEEeCC--------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCE
Q 016421 75 KRFHKLIKSGYLYGLRKQLGI--VEHWVYLVCDP--------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSE 144 (390)
Q Consensus 75 k~w~~l~~s~~~~~~r~~~~~--~~~~l~~~~~~--------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~ 144 (390)
.+|..+......+..|..+.. ..+.||++||. .++++||+.+++|..++++...+......+++++.++.
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~ 230 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST 230 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence 467765443333444544443 36889999862 35899999999999877643222112223457788999
Q ss_pred EEEEccccc---CCeEEEEECCCCcEeecCCC---CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 145 LLVFGRELF---DFAIWKYSLVFRSWMKCEGM---NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 145 iy~~Gg~~~---~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
||++||... .+++++||+.+++|+.++++ |.+|..|++++++++||++||..... ..+++++||+.+++|+.+
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~ 309 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHC 309 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeC
Confidence 999999653 47899999999999999887 78999999999999999999987543 478899999999999998
Q ss_pred CC---CCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 219 PS---MHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 219 ~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
+. ++.+|..+++++++++||++||.++. ..+++++||+.+++|+.++.+.... .+|..+++++++++||++||
T Consensus 310 ~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~P--~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 310 STPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVRP--SERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred CCCCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCCC--CCcceeEEEEECCEEEEECC
Confidence 64 56788899999999999999998643 3688999999999999997652211 14566778999999999998
Q ss_pred CC--------------CeEEEEeCCCCceEEccCCCc---cccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeee
Q 016421 296 LT--------------NMVKKYDKLKNTWDVLGRLPV---RADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSW 356 (390)
Q Consensus 296 ~~--------------~~v~~yd~~~~~W~~v~~~~~---~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y 356 (390)
.. +++++||+.+++|+.+..++. .+..|...+++...+ ++.|+++||..+.+....|++++
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~ 465 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 465 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEE
Confidence 42 479999999999999876542 122221111222223 34599999998777778899999
Q ss_pred cCCC
Q 016421 357 CPKS 360 (390)
Q Consensus 357 ~~~~ 360 (390)
++++
T Consensus 466 ~~~~ 469 (470)
T PLN02193 466 GIDS 469 (470)
T ss_pred ecCC
Confidence 8765
No 11
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.7e-34 Score=273.19 Aligned_cols=251 Identities=22% Similarity=0.358 Sum_probs=195.6
Q ss_pred eEEEecCC----CceeeCCCC---CCCcccCCCCeeEEEeCCEEEEEccccc-----CCeEEEEECCCCcEeecCCC---
Q 016421 109 WEAFDPMK----KKWMALPKI---PCDECFNHADKESLAVGSELLVFGRELF-----DFAIWKYSLVFRSWMKCEGM--- 173 (390)
Q Consensus 109 ~~~~d~~~----~~W~~l~~~---p~~~~~~~~~~~~~~~~~~iy~~Gg~~~-----~~~~~~yd~~t~~W~~~~~~--- 173 (390)
.+.++|.+ ++|..++++ |.+|. .+.++++++.||++||... .+++++||+.+++|..++++
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~----~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~ 214 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRC----SHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDV 214 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCcc----ccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCC
Confidence 44457654 789998764 44443 3456788999999999642 25799999999999987643
Q ss_pred CC-CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC---CCCCcCceEEEECCEEEEEecccCCCcc
Q 016421 174 NH-PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM---HSPRRLCSGFFMDGKFYVIGGMSSPTVS 249 (390)
Q Consensus 174 ~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 249 (390)
|. .|..+++++++++||++||..... ..+++++||+.+++|+.++++ |.+|..|++++++++||++||.+... .
T Consensus 215 P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~ 292 (470)
T PLN02193 215 PHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-R 292 (470)
T ss_pred CCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-C
Confidence 33 245778889999999999987543 578999999999999999887 78899999999999999999987543 5
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC----CCeEEEEeCCCCceEEccCCCccccCCCc
Q 016421 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL----TNMVKKYDKLKNTWDVLGRLPVRADLSNG 325 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~ 325 (390)
++++++||+.+++|+.++..... ...|..+.+++++++||++||. .+++++||+++++|++++.+...+..|
T Consensus 293 ~~~~~~yd~~t~~W~~~~~~~~~--~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R-- 368 (470)
T PLN02193 293 LKTLDSYNIVDKKWFHCSTPGDS--FSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER-- 368 (470)
T ss_pred cceEEEEECCCCEEEeCCCCCCC--CCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc--
Confidence 67899999999999998753211 1246667888999999999984 378999999999999997653222222
Q ss_pred ceeEEEEeCCEEEEEcCCCCC--------CCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 326 WGLAFKACGNELLVVGGQRGP--------EGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 326 ~~~~~~~~~~~lyv~GG~~~~--------~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
.++++++++++|||+||.... .....++++||+.+ ++|+.+..+
T Consensus 369 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t------~~W~~~~~~ 420 (470)
T PLN02193 369 SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET------LQWERLDKF 420 (470)
T ss_pred ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCc------CEEEEcccC
Confidence 236677899999999997531 12345799999999 899998753
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.6e-34 Score=268.87 Aligned_cols=257 Identities=19% Similarity=0.236 Sum_probs=197.6
Q ss_pred cccEEEEEeCC--CeeEEEecC--CCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccccc---------CCeEEEEEC
Q 016421 96 VEHWVYLVCDP--RGWEAFDPM--KKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF---------DFAIWKYSL 162 (390)
Q Consensus 96 ~~~~l~~~~~~--~~~~~~d~~--~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~---------~~~~~~yd~ 162 (390)
.++.||+++|. ..++.||+. +++|..++++|..+. ..+.+++.++.||++||... .+++++||+
T Consensus 37 ~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r---~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~ 113 (376)
T PRK14131 37 DNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPR---EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDP 113 (376)
T ss_pred ECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCc---ccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeC
Confidence 37899998764 668899986 478999998875321 22456788999999999643 357999999
Q ss_pred CCCcEeecCC-CCCCCcceeeee-eCCEEEEEeccCCCC---------------------------------CccceEEE
Q 016421 163 VFRSWMKCEG-MNHPRCLFGSGS-LGSIAIIAGGSDKNG---------------------------------HVLKSAEL 207 (390)
Q Consensus 163 ~t~~W~~~~~-~~~~r~~~~~~~-~~~~lyv~GG~~~~~---------------------------------~~~~~~~~ 207 (390)
.+++|+.+++ +|.++..+++++ .+++||++||..... ...+++++
T Consensus 114 ~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~ 193 (376)
T PRK14131 114 KTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLS 193 (376)
T ss_pred CCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEE
Confidence 9999999885 356666676666 799999999975310 01468999
Q ss_pred EECCCCcEEEcCCCCC-CCcCceEEEECCEEEEEecccCCCccCceEE--EEeCCCCceEEccCCCCCCCCc-C--CCCC
Q 016421 208 YDSTTGRWEMLPSMHS-PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGE--EFDLETRKWRKIEGMYPNVNRA-A--QAPP 281 (390)
Q Consensus 208 yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~--~yd~~~~~W~~~~~~~~~~~~~-~--~~~~ 281 (390)
||+.+++|+.++++|. +|..++++.++++||++||....+.....++ .||+.+++|..+++||.++... + +..+
T Consensus 194 YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ 273 (376)
T PRK14131 194 YDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGA 273 (376)
T ss_pred EECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceE
Confidence 9999999999999996 6778888889999999999754332333343 4688999999999998754211 1 1222
Q ss_pred EEEEECCEEEEEecCC----------------------CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEE
Q 016421 282 LVAVVDNQLYAVEYLT----------------------NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLV 339 (390)
Q Consensus 282 ~~~~~~g~l~v~gg~~----------------------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv 339 (390)
.+++++++||++||.. ..+++||+++++|+.++.||.++.. +++++++++|||
T Consensus 274 ~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~-----~~av~~~~~iyv 348 (376)
T PRK14131 274 FAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY-----GVSVSWNNGVLL 348 (376)
T ss_pred eceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc-----eEEEEeCCEEEE
Confidence 3567899999999842 1467899999999999999887642 467789999999
Q ss_pred EcCCCCCCCCeEEEeeecCCC
Q 016421 340 VGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 340 ~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+||.........+|++|++++
T Consensus 349 ~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 349 IGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred EcCCCCCCcEeeeEEEEEEcC
Confidence 999876556678899999987
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3e-34 Score=266.54 Aligned_cols=247 Identities=20% Similarity=0.243 Sum_probs=188.1
Q ss_pred CCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEEC--CCCcEeecCCCC-CCCcceeeeeeCCEEEEEeccCCC
Q 016421 122 LPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSL--VFRSWMKCEGMN-HPRCLFGSGSLGSIAIIAGGSDKN 198 (390)
Q Consensus 122 l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~ 198 (390)
+|+||.++.. ..++++++.||++||.. .+.+++||+ .+++|..+++|| .+|..+++++++++||++||....
T Consensus 1 ~~~lp~~~~~----~~~~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~ 75 (346)
T TIGR03547 1 LPDLPVGFKN----GTGAIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKA 75 (346)
T ss_pred CCCCCccccC----ceEEEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCC
Confidence 4667765443 23567899999999974 367899996 678999999998 589999999999999999998532
Q ss_pred C-----CccceEEEEECCCCcEEEcC-CCCCCCcCceEE-EECCEEEEEecccCCC------------------------
Q 016421 199 G-----HVLKSAELYDSTTGRWEMLP-SMHSPRRLCSGF-FMDGKFYVIGGMSSPT------------------------ 247 (390)
Q Consensus 199 ~-----~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~------------------------ 247 (390)
. ..++++++||+.+++|+.++ ++|.+|..++++ +++++||++||.+...
T Consensus 76 ~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T TIGR03547 76 NSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAA 155 (346)
T ss_pred CCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHH
Confidence 2 14678999999999999997 456667667666 6899999999986320
Q ss_pred ---------ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC------CeEEEEe--CCCCce
Q 016421 248 ---------VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT------NMVKKYD--KLKNTW 310 (390)
Q Consensus 248 ---------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~------~~v~~yd--~~~~~W 310 (390)
...+.+++||+.+++|+.+++||.. .+..+++++++++||++||.. ..++.|| +++++|
T Consensus 156 ~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 156 YFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL----GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred HhCCChhHcCccceEEEEECCCCceeECccCCCC----cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 0136899999999999999998752 345567889999999999842 2455565 577899
Q ss_pred EEccCCCccccC--CCcceeEEEEeCCEEEEEcCCCCCC----------------CCeEEEeeecCCCCCCCCCCceEEe
Q 016421 311 DVLGRLPVRADL--SNGWGLAFKACGNELLVVGGQRGPE----------------GENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 311 ~~v~~~~~~~~~--~~~~~~~~~~~~~~lyv~GG~~~~~----------------~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
+.++.||.++.. ....++.+++++++|||+||..... .....+++||+++ ++|+.+
T Consensus 232 ~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~------~~W~~~ 305 (346)
T TIGR03547 232 NKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN------GKWSKV 305 (346)
T ss_pred eecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC------Cccccc
Confidence 999999876421 1113455678999999999975311 0124688999998 799999
Q ss_pred cccCccCeEEe
Q 016421 373 AEKQHVGVFVY 383 (390)
Q Consensus 373 ~~~p~~~~~~~ 383 (390)
++||..+....
T Consensus 306 ~~lp~~~~~~~ 316 (346)
T TIGR03547 306 GKLPQGLAYGV 316 (346)
T ss_pred CCCCCCceeeE
Confidence 99987665544
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=7e-34 Score=261.35 Aligned_cols=241 Identities=18% Similarity=0.186 Sum_probs=186.7
Q ss_pred eeEEEeCCEEEEEcccccC-------------CeEEEEE-CCC-CcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCC
Q 016421 136 KESLAVGSELLVFGRELFD-------------FAIWKYS-LVF-RSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGH 200 (390)
Q Consensus 136 ~~~~~~~~~iy~~Gg~~~~-------------~~~~~yd-~~t-~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~ 200 (390)
..+.++++.||++||.... +++++|+ +.. .+|..+++||.+|..+++++++++||++||.....
T Consensus 7 ~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~- 85 (323)
T TIGR03548 7 CYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE- 85 (323)
T ss_pred EeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC-
Confidence 3456789999999997533 3677775 332 37999999999998888889999999999987543
Q ss_pred ccceEEEEECCCCcE----EEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCc
Q 016421 201 VLKSAELYDSTTGRW----EMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRA 276 (390)
Q Consensus 201 ~~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~ 276 (390)
..+++++||+.+++| +.+++||.+|..+++++++++||++||..... ..+++++||+.+++|++++++|..
T Consensus 86 ~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~---- 160 (323)
T TIGR03548 86 RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGE---- 160 (323)
T ss_pred CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCC----
Confidence 478999999999998 77899999999999999999999999975432 478899999999999999988742
Q ss_pred CCCCCEEEEECCEEEEEecCC----CeEEEEeCCCCceEEccCCCccccCCCc-ceeEEEEeCCEEEEEcCCCCCC----
Q 016421 277 AQAPPLVAVVDNQLYAVEYLT----NMVKKYDKLKNTWDVLGRLPVRADLSNG-WGLAFKACGNELLVVGGQRGPE---- 347 (390)
Q Consensus 277 ~~~~~~~~~~~g~l~v~gg~~----~~v~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~~~~~~~~lyv~GG~~~~~---- 347 (390)
.|..+.+++++++||++||.. .++++||+++++|+.++.|+.....+.. ..++++..+++|||+||.++..
T Consensus 161 ~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 240 (323)
T TIGR03548 161 PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA 240 (323)
T ss_pred CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence 345567788999999999853 4689999999999999887532111111 1233445689999999986421
Q ss_pred ---------------------------CCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeeee
Q 016421 348 ---------------------------GENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 348 ---------------------------~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~ 388 (390)
...+++++||+.+ ++|+.++++|...+...+.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~------~~W~~~~~~p~~~r~~~~~~~~ 302 (323)
T TIGR03548 241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRT------GKWKSIGNSPFFARCGAALLLT 302 (323)
T ss_pred HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCC------CeeeEcccccccccCchheEEE
Confidence 1235799999999 8999999887545544444443
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=7.7e-34 Score=261.09 Aligned_cols=246 Identities=16% Similarity=0.280 Sum_probs=189.9
Q ss_pred ccccEEEEEeCC----------------CeeEEEe-cCCC-ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---c
Q 016421 95 IVEHWVYLVCDP----------------RGWEAFD-PMKK-KWMALPKIPCDECFNHADKESLAVGSELLVFGREL---F 153 (390)
Q Consensus 95 ~~~~~l~~~~~~----------------~~~~~~d-~~~~-~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---~ 153 (390)
...+.||++||. .+++.|+ +... +|..+++||.++.. ++++++++.||++||.. .
T Consensus 11 ~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~----~~~~~~~~~lyviGG~~~~~~ 86 (323)
T TIGR03548 11 IIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAY----GASVSVENGIYYIGGSNSSER 86 (323)
T ss_pred EECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccc----eEEEEECCEEEEEcCCCCCCC
Confidence 346788888862 1455664 4323 79999999987643 24577899999999964 2
Q ss_pred CCeEEEEECCCCcE----eecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCC-CCcCc
Q 016421 154 DFAIWKYSLVFRSW----MKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHS-PRRLC 228 (390)
Q Consensus 154 ~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~ 228 (390)
.+++++||+.+++| ..++++|.+|..+++++++++||++||.... ...+++++||+.+++|+.+++||. +|..+
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~ 165 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRVQP 165 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCCcc
Confidence 36899999999988 7789999999999999999999999997543 347899999999999999999885 78888
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCC-CCEEEEECCEEEEEecCC----------
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA-PPLVAVVDNQLYAVEYLT---------- 297 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~g~l~v~gg~~---------- 297 (390)
.+++++++||++||.+.. ...++++||+.+++|+.+++++.......+. ...+++.+++||++||..
T Consensus 166 ~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 243 (323)
T TIGR03548 166 VCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVID 243 (323)
T ss_pred eEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhh
Confidence 888999999999998643 2456899999999999998875321111122 223445579999999853
Q ss_pred ---------------------------CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCe
Q 016421 298 ---------------------------NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGEN 350 (390)
Q Consensus 298 ---------------------------~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~ 350 (390)
+.+++||+.+++|+.++++|...+ .++++++++++||++||...+.-.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r----~~~~~~~~~~~iyv~GG~~~pg~rt 319 (323)
T TIGR03548 244 LATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFAR----CGAALLLTGNNIFSINGELKPGVRT 319 (323)
T ss_pred hhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccccc----CchheEEECCEEEEEeccccCCcCC
Confidence 579999999999999998774322 2466889999999999987655443
Q ss_pred E
Q 016421 351 V 351 (390)
Q Consensus 351 ~ 351 (390)
.
T Consensus 320 ~ 320 (323)
T TIGR03548 320 P 320 (323)
T ss_pred c
Confidence 3
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.9e-32 Score=256.32 Aligned_cols=254 Identities=19% Similarity=0.212 Sum_probs=191.2
Q ss_pred ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECC--CCcEeecCCCC-CCCcceeeeeeCCEEEEEec
Q 016421 118 KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLV--FRSWMKCEGMN-HPRCLFGSGSLGSIAIIAGG 194 (390)
Q Consensus 118 ~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~lyv~GG 194 (390)
.++.+++||.++... +++++++.||++||.. .+.+++||+. +++|..++++| .+|..+++++++++||++||
T Consensus 18 ~~~~l~~lP~~~~~~----~~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG 92 (376)
T PRK14131 18 NAEQLPDLPVPFKNG----TGAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGG 92 (376)
T ss_pred ecccCCCCCcCccCC----eEEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcC
Confidence 366788898765432 3567899999999964 3568899986 47899999987 58988999999999999999
Q ss_pred cCCC-----CCccceEEEEECCCCcEEEcCC-CCCCCcCceEEE-ECCEEEEEecccCCC--------------------
Q 016421 195 SDKN-----GHVLKSAELYDSTTGRWEMLPS-MHSPRRLCSGFF-MDGKFYVIGGMSSPT-------------------- 247 (390)
Q Consensus 195 ~~~~-----~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~-------------------- 247 (390)
.... ...++++++||+.+++|+.+++ +|.++..+++++ ++++||++||.....
T Consensus 93 ~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 93 IGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred CCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 8641 1246789999999999999985 456666777666 899999999975310
Q ss_pred -------------ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC------CeEE--EEeCC
Q 016421 248 -------------VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT------NMVK--KYDKL 306 (390)
Q Consensus 248 -------------~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~------~~v~--~yd~~ 306 (390)
...+.+++||+.+++|+.++++|.. .+..++++.++++||++||.. ..++ .||++
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~----~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~ 248 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL----GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGN 248 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCC----CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCC
Confidence 0246799999999999999988752 244567888999999999832 2333 45788
Q ss_pred CCceEEccCCCccccCC---CcceeEEEEeCCEEEEEcCCCCCCC----------------CeEEEeeecCCCCCCCCCC
Q 016421 307 KNTWDVLGRLPVRADLS---NGWGLAFKACGNELLVVGGQRGPEG----------------ENVVLNSWCPKSGVNNGTL 367 (390)
Q Consensus 307 ~~~W~~v~~~~~~~~~~---~~~~~~~~~~~~~lyv~GG~~~~~~----------------~~~~i~~y~~~~~~~~~~~ 367 (390)
+++|+.++.||.++... ...++.+++++++|||+||...... ....+++||+++ +
T Consensus 249 ~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~------~ 322 (376)
T PRK14131 249 NLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN------G 322 (376)
T ss_pred CcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC------C
Confidence 99999999998765311 1122335678999999999763211 113477999998 7
Q ss_pred ceEEecccCccCeEEeeee
Q 016421 368 DWKVLAEKQHVGVFVYNCA 386 (390)
Q Consensus 368 ~W~~~~~~p~~~~~~~~~~ 386 (390)
+|+.+++||..+..+.+++
T Consensus 323 ~W~~~~~lp~~r~~~~av~ 341 (376)
T PRK14131 323 KWQKVGELPQGLAYGVSVS 341 (376)
T ss_pred cccccCcCCCCccceEEEE
Confidence 9999999998776665443
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=262.82 Aligned_cols=197 Identities=17% Similarity=0.372 Sum_probs=173.6
Q ss_pred cccEEEEEeCC------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEee
Q 016421 96 VEHWVYLVCDP------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMK 169 (390)
Q Consensus 96 ~~~~l~~~~~~------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~ 169 (390)
.++.+|++||. ..++.|||.+++|..+++|+.++.. +++++.++.||++||......+++|||.+++|..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~----~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY----ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc----ceEEEECCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 46789999863 4688999999999999999987653 3467789999999997655679999999999999
Q ss_pred cCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCcc
Q 016421 170 CEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVS 249 (390)
Q Consensus 170 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 249 (390)
+++||.+|..+++++++++||++||.... .+.+++|||.+++|+.+++|+.+|..+++++++|+||++||.
T Consensus 346 ~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~------ 416 (480)
T PHA02790 346 MPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN------ 416 (480)
T ss_pred CCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc------
Confidence 99999999999999999999999998643 367999999999999999999999999999999999999973
Q ss_pred CceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEc
Q 016421 250 LTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 250 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v 313 (390)
+++||+.+++|+.+++|+. +|..+++++++|+||++||. ...+++||+++++|+..
T Consensus 417 ---~e~ydp~~~~W~~~~~m~~-----~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 ---AEFYCESSNTWTLIDDPIY-----PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ---eEEecCCCCcEeEcCCCCC-----CccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 5789999999999999987 45666899999999999984 36799999999999864
No 18
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.6e-31 Score=262.40 Aligned_cols=215 Identities=20% Similarity=0.348 Sum_probs=184.7
Q ss_pred cccEEEEEeCC-------CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccc---cCCeEEEEECCCC
Q 016421 96 VEHWVYLVCDP-------RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGREL---FDFAIWKYSLVFR 165 (390)
Q Consensus 96 ~~~~l~~~~~~-------~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~---~~~~~~~yd~~t~ 165 (390)
.++.+|++||. .+++.||+.+++|..++++|.++.. +++++.+++||++||.. ..+++++||+.++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~----~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN----PGVTVFNNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc----ceEEEECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 47889999862 3688999999999999999876643 34678899999999965 3467899999999
Q ss_pred cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccC
Q 016421 166 SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSS 245 (390)
Q Consensus 166 ~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 245 (390)
+|+.++++|.+|..+++++++++||++||........+++++||+.+++|+.++++|.+|..++++.++++||++||.+.
T Consensus 369 ~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 369 KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccC
Confidence 99999999999999999999999999999765444578999999999999999999999999999999999999999864
Q ss_pred CC--ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-----CCeEEEEeCCCCceEEccCCCc
Q 016421 246 PT--VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-----TNMVKKYDKLKNTWDVLGRLPV 318 (390)
Q Consensus 246 ~~--~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-----~~~v~~yd~~~~~W~~v~~~~~ 318 (390)
.. ...+.+++||+.+++|+.+++++. ++..+++++.+++||++||. .+.+++||+++++|+.+..+|.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNF-----PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCc-----ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 32 125669999999999999998876 45566788899999999984 4689999999999999988765
Q ss_pred c
Q 016421 319 R 319 (390)
Q Consensus 319 ~ 319 (390)
.
T Consensus 524 ~ 524 (534)
T PHA03098 524 V 524 (534)
T ss_pred c
Confidence 3
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.98 E-value=9.4e-31 Score=217.49 Aligned_cols=242 Identities=17% Similarity=0.200 Sum_probs=192.8
Q ss_pred CeeEEEeCCEEEEEcccc--------cCCeEEEEECCCCcEeecCC-------------CCCCCcceeeeeeCCEEEEEe
Q 016421 135 DKESLAVGSELLVFGREL--------FDFAIWKYSLVFRSWMKCEG-------------MNHPRCLFGSGSLGSIAIIAG 193 (390)
Q Consensus 135 ~~~~~~~~~~iy~~Gg~~--------~~~~~~~yd~~t~~W~~~~~-------------~~~~r~~~~~~~~~~~lyv~G 193 (390)
.+++++++..||-|||+- ..-++.++|..+-+|..+|+ .|..|.+|.++.+++++|+-|
T Consensus 16 NHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG 95 (392)
T KOG4693|consen 16 NHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG 95 (392)
T ss_pred cceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc
Confidence 456789999999999964 22578999999999999876 245689999999999999999
Q ss_pred ccCCCCCccceEEEEECCCCcEEEc---CCCCCCCcCceEEEECCEEEEEecccCC-CccCceEEEEeCCCCceEEccCC
Q 016421 194 GSDKNGHVLKSAELYDSTTGRWEML---PSMHSPRRLCSGFFMDGKFYVIGGMSSP-TVSLTCGEEFDLETRKWRKIEGM 269 (390)
Q Consensus 194 G~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~~ 269 (390)
|.+.+....+.++.||++++.|... +-+|..|.+|++++.++.+|++||+... ....++++.+|..|.+|+.+...
T Consensus 96 GRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk 175 (392)
T KOG4693|consen 96 GRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK 175 (392)
T ss_pred CccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhcc
Confidence 9988766788999999999999874 3578889999999999999999999653 34567899999999999998754
Q ss_pred CCCCCCcCCCCCEEEEECCEEEEEec--------------CCCeEEEEeCCCCceEEccCC---CccccCCCcceeEEEE
Q 016421 270 YPNVNRAAQAPPLVAVVDNQLYAVEY--------------LTNMVKKYDKLKNTWDVLGRL---PVRADLSNGWGLAFKA 332 (390)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~l~v~gg--------------~~~~v~~yd~~~~~W~~v~~~---~~~~~~~~~~~~~~~~ 332 (390)
..+.. -|-.++++++++.+|++|| +...+..+|..++.|.+.+.- |..++ ++++.+
T Consensus 176 g~Ppr--wRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR-----SHS~fv 248 (392)
T KOG4693|consen 176 GDPPR--WRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR-----SHSTFV 248 (392)
T ss_pred CCCch--hhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc-----ccceEE
Confidence 43211 2345568889999999997 235788899999999997543 33333 267789
Q ss_pred eCCEEEEEcCCCCCC-CCeEEEeeecCCCCCCCCCCceEEecccC--ccCeEEeeeeeec
Q 016421 333 CGNELLVVGGQRGPE-GENVVLNSWCPKSGVNNGTLDWKVLAEKQ--HVGVFVYNCAVLG 389 (390)
Q Consensus 333 ~~~~lyv~GG~~~~~-~~~~~i~~y~~~~~~~~~~~~W~~~~~~p--~~~~~~~~~~~~~ 389 (390)
++++||+|||+.+.- ...+++++|||.+ -.|+++.... ++.|.-+||+|+|
T Consensus 249 Yng~~Y~FGGYng~ln~HfndLy~FdP~t------~~W~~I~~~Gk~P~aRRRqC~~v~g 302 (392)
T KOG4693|consen 249 YNGKMYMFGGYNGTLNVHFNDLYCFDPKT------SMWSVISVRGKYPSARRRQCSVVSG 302 (392)
T ss_pred EcceEEEecccchhhhhhhcceeeccccc------chheeeeccCCCCCcccceeEEEEC
Confidence 999999999998743 3567899999999 7899997642 4445556666665
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=209.16 Aligned_cols=241 Identities=15% Similarity=0.245 Sum_probs=190.0
Q ss_pred ccEEEEEeC-----------CCeeEEEecCCCceeeCCCC------CC--C-cccCCCCeeEEEeCCEEEEEcccc----
Q 016421 97 EHWVYLVCD-----------PRGWEAFDPMKKKWMALPKI------PC--D-ECFNHADKESLAVGSELLVFGREL---- 152 (390)
Q Consensus 97 ~~~l~~~~~-----------~~~~~~~d~~~~~W~~l~~~------p~--~-~~~~~~~~~~~~~~~~iy~~Gg~~---- 152 (390)
...+|.||+ ..++++++..+-+|.++|+- +. + ..+.+.++.++...+++|+.||.+
T Consensus 23 G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~eg 102 (392)
T KOG4693|consen 23 GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEG 102 (392)
T ss_pred cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCccc
Confidence 678999975 46788999999999998762 11 1 113345577889999999999955
Q ss_pred cCCeEEEEECCCCcEeec---CCCCCCCcceeeeeeCCEEEEEeccCCCC-CccceEEEEECCCCcEEEcC---CCCCCC
Q 016421 153 FDFAIWKYSLVFRSWMKC---EGMNHPRCLFGSGSLGSIAIIAGGSDKNG-HVLKSAELYDSTTGRWEMLP---SMHSPR 225 (390)
Q Consensus 153 ~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~---~~~~~r 225 (390)
..+.++.|||.+++|.+. ...|.+|.+|++++.++.+|+|||+..+. ..++++.++|..|.+|+.+. +.|.-|
T Consensus 103 aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 103 ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 357889999999999764 34789999999999999999999986543 36789999999999999974 445557
Q ss_pred cCceEEEECCEEEEEecccCC--------CccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-
Q 016421 226 RLCSGFFMDGKFYVIGGMSSP--------TVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL- 296 (390)
Q Consensus 226 ~~~~~~~~~~~iyv~GG~~~~--------~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~- 296 (390)
..|++.++++.+|++||.... ..+.+.+..+|..|+.|...+.-+. -+..|..+.+.+.+|+||++||+
T Consensus 183 DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~--~P~GRRSHS~fvYng~~Y~FGGYn 260 (392)
T KOG4693|consen 183 DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM--KPGGRRSHSTFVYNGKMYMFGGYN 260 (392)
T ss_pred hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc--CCCcccccceEEEcceEEEecccc
Confidence 889999999999999998642 2345678889999999998754322 11255667799999999999984
Q ss_pred ------CCeEEEEeCCCCceEEccC---CCccccCCCcceeEEEEeCCEEEEEcCCC
Q 016421 297 ------TNMVKKYDKLKNTWDVLGR---LPVRADLSNGWGLAFKACGNELLVVGGQR 344 (390)
Q Consensus 297 ------~~~v~~yd~~~~~W~~v~~---~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 344 (390)
.+++++|||.+..|+.|.. -|..++. .++++.++++|+|||..
T Consensus 261 g~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRR-----qC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 261 GTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRR-----QCSVVSGGKVYLFGGTS 312 (392)
T ss_pred hhhhhhhcceeecccccchheeeeccCCCCCcccc-----eeEEEECCEEEEecCCC
Confidence 3689999999999999863 3333332 56778899999999965
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.94 E-value=6e-25 Score=210.39 Aligned_cols=231 Identities=23% Similarity=0.310 Sum_probs=189.9
Q ss_pred eeEEEeCCEEEEEcccccC-----CeEEEEECCCCcEeecC---CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEE
Q 016421 136 KESLAVGSELLVFGRELFD-----FAIWKYSLVFRSWMKCE---GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAEL 207 (390)
Q Consensus 136 ~~~~~~~~~iy~~Gg~~~~-----~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 207 (390)
++++..++.+|++||.... .+++++|..+..|.... ..|.+|..|.++.++++||+|||........++++.
T Consensus 64 hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~ 143 (482)
T KOG0379|consen 64 HSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHS 143 (482)
T ss_pred cceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEe
Confidence 3456679999999996521 25999999999997654 357899999999999999999999864556889999
Q ss_pred EECCCCcEEEc---CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE
Q 016421 208 YDSTTGRWEML---PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA 284 (390)
Q Consensus 208 yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 284 (390)
||+.|++|..+ ...|.+|.+|++++++.+|||+||.+......+++++||+.+.+|.++......+. +|.+|+++
T Consensus 144 ~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~--pR~gH~~~ 221 (482)
T KOG0379|consen 144 LDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS--PRYGHAMV 221 (482)
T ss_pred ccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC--CCCCceEE
Confidence 99999999886 35688899999999999999999998876679999999999999999876544332 68889999
Q ss_pred EECCEEEEEec------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCC-CeEEEeeec
Q 016421 285 VVDNQLYAVEY------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEG-ENVVLNSWC 357 (390)
Q Consensus 285 ~~~g~l~v~gg------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~-~~~~i~~y~ 357 (390)
+.+++++++|| ..++++.+|..+.+|.++......+..| .++..+..+.+++++||...... ...+++.|+
T Consensus 222 ~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R--~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~ 299 (482)
T KOG0379|consen 222 VVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR--SGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLD 299 (482)
T ss_pred EECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc--ceeeeEEECCEEEEEcCCccccccccccccccc
Confidence 99999999986 3579999999999999876444433333 34667789999999999876533 567788999
Q ss_pred CCCCCCCCCCceEEecccC
Q 016421 358 PKSGVNNGTLDWKVLAEKQ 376 (390)
Q Consensus 358 ~~~~~~~~~~~W~~~~~~p 376 (390)
.++ ..|..+....
T Consensus 300 ~~~------~~w~~~~~~~ 312 (482)
T KOG0379|consen 300 LET------LVWSKVESVG 312 (482)
T ss_pred ccc------cceeeeeccc
Confidence 987 7999887664
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=190.43 Aligned_cols=223 Identities=20% Similarity=0.257 Sum_probs=177.6
Q ss_pred eCCEEEEEcccccC-------CeEEEEECCCCcEeec--CCCCCCCcceeeeeeC-CEEEEEeccCCCCC-----ccceE
Q 016421 141 VGSELLVFGRELFD-------FAIWKYSLVFRSWMKC--EGMNHPRCLFGSGSLG-SIAIIAGGSDKNGH-----VLKSA 205 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~-------~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~-----~~~~~ 205 (390)
..+.|++|||..+. +++|.||..+++|+.+ |..|.||+.|.++++- +.+|++||--..-. ..+++
T Consensus 77 ekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~ 156 (521)
T KOG1230|consen 77 EKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDL 156 (521)
T ss_pred CcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhe
Confidence 35799999996533 6899999999999887 4568899999887774 89999999642211 46789
Q ss_pred EEEECCCCcEEEcC--CCCCCCcCceEEEECCEEEEEecccC---CCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016421 206 ELYDSTTGRWEMLP--SMHSPRRLCSGFFMDGKFYVIGGMSS---PTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 206 ~~yd~~t~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
|.||+.+++|+++. .-|.+|.+|.+++...+|++|||... ...+.+++++||+.+-+|+.+.+ +.. .+.+|++
T Consensus 157 W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga-~PtpRSG 234 (521)
T KOG1230|consen 157 WLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGA-GPTPRSG 234 (521)
T ss_pred eeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCC-CCCCCCc
Confidence 99999999999974 56889999999999999999999854 33568999999999999999987 322 3447788
Q ss_pred CEEEEE-CCEEEEEecCC--------------CeEEEEeCCC-----CceEEccCCCccccCCCcceeEEEEeCCEEEEE
Q 016421 281 PLVAVV-DNQLYAVEYLT--------------NMVKKYDKLK-----NTWDVLGRLPVRADLSNGWGLAFKACGNELLVV 340 (390)
Q Consensus 281 ~~~~~~-~g~l~v~gg~~--------------~~v~~yd~~~-----~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~ 340 (390)
+++.+. +|.|||+||++ ++++.+++++ -.|+++.+....+..|++++++ +.-+++-+.|
T Consensus 235 cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~-va~n~kal~F 313 (521)
T KOG1230|consen 235 CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVA-VAKNHKALFF 313 (521)
T ss_pred ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEE-EecCCceEEe
Confidence 888887 99999999843 4778888888 4799998877777777776653 3457799999
Q ss_pred cCCCCC--------CCCeEEEeeecCCCCCCCCCCceEEe
Q 016421 341 GGQRGP--------EGENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 341 GG~~~~--------~~~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
||+-+- +...++++.||... ++|...
T Consensus 314 GGV~D~eeeeEsl~g~F~NDLy~fdlt~------nrW~~~ 347 (521)
T KOG1230|consen 314 GGVCDLEEEEESLSGEFFNDLYFFDLTR------NRWSEG 347 (521)
T ss_pred cceecccccchhhhhhhhhhhhheeccc------chhhHh
Confidence 997541 23457899999988 899754
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=193.22 Aligned_cols=218 Identities=19% Similarity=0.228 Sum_probs=178.8
Q ss_pred ccEEEEEeC------CC--eeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccccc----CCeEEEEECCC
Q 016421 97 EHWVYLVCD------PR--GWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF----DFAIWKYSLVF 164 (390)
Q Consensus 97 ~~~l~~~~~------~~--~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~----~~~~~~yd~~t 164 (390)
.+.+|++|| .. +++.||..+..|.....-...+ .....+..++++++||+|||... .++++.||+.|
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t 148 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLST 148 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC-CcccceeEEEECCeEEEEccccCCCCChhheEeccCCC
Confidence 788999975 23 4999999999997765433322 33344567888999999999652 35899999999
Q ss_pred CcEeecCC---CCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc---CCCCCCCcCceEEEECCEEE
Q 016421 165 RSWMKCEG---MNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML---PSMHSPRRLCSGFFMDGKFY 238 (390)
Q Consensus 165 ~~W~~~~~---~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iy 238 (390)
++|..+.+ +|.+|..|++++++.++||+||........+++++||+.+.+|.++ ++.|.||+.|++++++++++
T Consensus 149 ~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~ 228 (482)
T KOG0379|consen 149 RTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLL 228 (482)
T ss_pred CcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEE
Confidence 99988754 6889999999999999999999987665799999999999999986 46688999999999999999
Q ss_pred EEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC-------CCeEEEEeCCCCceE
Q 016421 239 VIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL-------TNMVKKYDKLKNTWD 311 (390)
Q Consensus 239 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~-------~~~v~~yd~~~~~W~ 311 (390)
++||.......+++++.+|+.+.+|..+..... ...+|..+..++.+..++++||. ..+++.||.+++.|.
T Consensus 229 v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~--~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~ 306 (482)
T KOG0379|consen 229 VFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGD--LPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWS 306 (482)
T ss_pred EEeccccCCceecceEeeecccceeeeccccCC--CCCCcceeeeEEECCEEEEEcCCccccccccccccccccccccee
Confidence 999998666789999999999999996654332 12266777788999999999873 357889999999999
Q ss_pred EccCCC
Q 016421 312 VLGRLP 317 (390)
Q Consensus 312 ~v~~~~ 317 (390)
.+....
T Consensus 307 ~~~~~~ 312 (482)
T KOG0379|consen 307 KVESVG 312 (482)
T ss_pred eeeccc
Confidence 987666
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=3.7e-22 Score=175.85 Aligned_cols=253 Identities=17% Similarity=0.185 Sum_probs=183.1
Q ss_pred CCCCChHHHHHHHhhhccccchhhh-HhhcHHHHHHhhcCCchhhhhh----cCccccEEEEEeC----------CCeeE
Q 016421 46 LLPGLVDDVALNCLAFACTSDYASL-LFINKRFHKLIKSGYLYGLRKQ----LGIVEHWVYLVCD----------PRGWE 110 (390)
Q Consensus 46 ~~~~LP~dl~~~iL~rlp~~~l~~~-~~V~k~w~~l~~s~~~~~~r~~----~~~~~~~l~~~~~----------~~~~~ 110 (390)
+.+.|-++.|.+|+..+-.+...+. ..+| .-+..|.. .....+-|++||| .++++
T Consensus 32 l~~e~de~~i~~~iq~~eaK~~e~~~e~~~----------~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy 101 (521)
T KOG1230|consen 32 LNEELDEADIAEIIQSLEAKQIEHVVETSV----------PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLY 101 (521)
T ss_pred cCcccchHHHHHHHHhhhhhccceeeeccC----------CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeee
Confidence 3445557888888888877643111 1111 11122222 1123457888875 36889
Q ss_pred EEecCCCceeeC--CCCCCCcccCCCCeeEEEeCCEEEEEcccccC---------CeEEEEECCCCcEeecCC--CCCCC
Q 016421 111 AFDPMKKKWMAL--PKIPCDECFNHADKESLAVGSELLVFGRELFD---------FAIWKYSLVFRSWMKCEG--MNHPR 177 (390)
Q Consensus 111 ~~d~~~~~W~~l--~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~---------~~~~~yd~~t~~W~~~~~--~~~~r 177 (390)
.||..+++|..+ |.-|.+++.+. +++...+.+|+|||...+ .++|.||..+++|.++.. -|.+|
T Consensus 102 ~Yn~k~~eWkk~~spn~P~pRsshq---~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R 178 (521)
T KOG1230|consen 102 SYNTKKNEWKKVVSPNAPPPRSSHQ---AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR 178 (521)
T ss_pred EEeccccceeEeccCCCcCCCccce---eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence 999999999876 44555555432 234446899999996532 579999999999998754 58999
Q ss_pred cceeeeeeCCEEEEEeccCCCCC---ccceEEEEECCCCcEEEcCC---CCCCCcCceEEEE-CCEEEEEecccC-----
Q 016421 178 CLFGSGSLGSIAIIAGGSDKNGH---VLKSAELYDSTTGRWEMLPS---MHSPRRLCSGFFM-DGKFYVIGGMSS----- 245 (390)
Q Consensus 178 ~~~~~~~~~~~lyv~GG~~~~~~---~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~----- 245 (390)
++|.+++...+|++|||+....+ +.+++++||+.+-+|..+.+ .|.+|.++..++. +|.|||.||++.
T Consensus 179 SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK 258 (521)
T KOG1230|consen 179 SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKK 258 (521)
T ss_pred ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhh
Confidence 99999999999999999875443 78999999999999999753 4788999998887 999999999864
Q ss_pred ---CCccCceEEEEeCCC-----CceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEec--------------CCCeEEE
Q 016421 246 ---PTVSLTCGEEFDLET-----RKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEY--------------LTNMVKK 302 (390)
Q Consensus 246 ---~~~~~~~v~~yd~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg--------------~~~~v~~ 302 (390)
.+...++++..++.+ -.|..+.+..... .+|.+..+++ -+++-+.+|| ..++++.
T Consensus 259 ~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP--spRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~ 336 (521)
T KOG1230|consen 259 DVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP--SPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYF 336 (521)
T ss_pred hhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC--CCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhh
Confidence 234567889999988 4688876543321 1455555554 4568999987 2478999
Q ss_pred EeCCCCceEEc
Q 016421 303 YDKLKNTWDVL 313 (390)
Q Consensus 303 yd~~~~~W~~v 313 (390)
||...+.|...
T Consensus 337 fdlt~nrW~~~ 347 (521)
T KOG1230|consen 337 FDLTRNRWSEG 347 (521)
T ss_pred eecccchhhHh
Confidence 99999999874
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=3.5e-22 Score=180.19 Aligned_cols=263 Identities=19% Similarity=0.288 Sum_probs=186.1
Q ss_pred HHHHHHhhcC-CchhhhhhcCc--cccEEEEEeCC-----CeeEEEecCCCceeeCC---CCCCCcccCCCCeeEEEeCC
Q 016421 75 KRFHKLIKSG-YLYGLRKQLGI--VEHWVYLVCDP-----RGWEAFDPMKKKWMALP---KIPCDECFNHADKESLAVGS 143 (390)
Q Consensus 75 k~w~~l~~s~-~~~~~r~~~~~--~~~~l~~~~~~-----~~~~~~d~~~~~W~~l~---~~p~~~~~~~~~~~~~~~~~ 143 (390)
-+||+...+. ...+.|+.+.. .++.+.+|||. ..++.||.++++|...+ .+|.. .+.+..++.+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpg----cAA~GfvcdGt 92 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPG----CAAFGFVCDGT 92 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCc----hhhcceEecCc
Confidence 3577655442 23344443332 36888888763 56789999999997542 23322 22345677899
Q ss_pred EEEEEcccc----cCCeEEEEECCCCcEeecC-------CCCCCCcceeeeeeCCEEEEEeccCCCC--------Cccce
Q 016421 144 ELLVFGREL----FDFAIWKYSLVFRSWMKCE-------GMNHPRCLFGSGSLGSIAIIAGGSDKNG--------HVLKS 204 (390)
Q Consensus 144 ~iy~~Gg~~----~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~lyv~GG~~~~~--------~~~~~ 204 (390)
+||+|||.. +++++|......=.|+++. ++|.||.+|+...++++.|+|||...+. +++++
T Consensus 93 rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnD 172 (830)
T KOG4152|consen 93 RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLND 172 (830)
T ss_pred eEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcc
Confidence 999999954 3455443333333455553 3578999999999999999999974332 27889
Q ss_pred EEEEECCCCc----EEEc---CCCCCCCcCceEEEE------CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC
Q 016421 205 AELYDSTTGR----WEML---PSMHSPRRLCSGFFM------DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP 271 (390)
Q Consensus 205 ~~~yd~~t~~----W~~~---~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 271 (390)
+++.++.-+. |... +.+|.+|..|.++.+ ..++||+||.++- .+.++|.+|+.|.+|.+...-
T Consensus 173 lY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~-- 248 (830)
T KOG4152|consen 173 LYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLS-- 248 (830)
T ss_pred eEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeeccccccc--
Confidence 9999888654 8653 577889999999876 3389999999764 588999999999999876421
Q ss_pred CCCCcCCCCCEEEEECCEEEEEec-------------------CCCeEEEEeCCCCceEEcc--CCCccccCCCcceeEE
Q 016421 272 NVNRAAQAPPLVAVVDNQLYAVEY-------------------LTNMVKKYDKLKNTWDVLG--RLPVRADLSNGWGLAF 330 (390)
Q Consensus 272 ~~~~~~~~~~~~~~~~g~l~v~gg-------------------~~~~v~~yd~~~~~W~~v~--~~~~~~~~~~~~~~~~ 330 (390)
.....+|+-|.+.+++++||++|| ..+++-+++..+..|+.+- .+......|.+.||++
T Consensus 249 G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCA 328 (830)
T KOG4152|consen 249 GVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCA 328 (830)
T ss_pred CCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccccccccee
Confidence 111125566779999999999998 3467788999999999864 2222223334567899
Q ss_pred EEeCCEEEEEcCCCC
Q 016421 331 KACGNELLVVGGQRG 345 (390)
Q Consensus 331 ~~~~~~lyv~GG~~~ 345 (390)
++++.+||+-.|.++
T Consensus 329 vAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 329 VAIGTRLYIWSGRDG 343 (830)
T ss_pred EEeccEEEEEeccch
Confidence 999999999999886
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=7.5e-21 Score=171.72 Aligned_cols=256 Identities=15% Similarity=0.182 Sum_probs=180.0
Q ss_pred CceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccccc--CCeEEEEECCCCcEeec---CCCCCCCcceeeeeeCCEEEE
Q 016421 117 KKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF--DFAIWKYSLVFRSWMKC---EGMNHPRCLFGSGSLGSIAII 191 (390)
Q Consensus 117 ~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~--~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~lyv 191 (390)
-+|.++.....+....++++-+++....|.+|||.+. -.++++||..+++|..- .+.|.+-..|+.+..+.+||+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilv 96 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILV 96 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEE
Confidence 3577664432221112223346888999999998653 36789999999999653 356777788888888999999
Q ss_pred EeccCCCCCccceEEEEECCCCcEEEcC-------CCCCCCcCceEEEECCEEEEEecccCCC--------ccCceEEEE
Q 016421 192 AGGSDKNGHVLKSAELYDSTTGRWEMLP-------SMHSPRRLCSGFFMDGKFYVIGGMSSPT--------VSLTCGEEF 256 (390)
Q Consensus 192 ~GG~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~v~~y 256 (390)
|||....+.+.++++.+....-.|+.+. +.|.||.+|+...++++-|+|||..+.. .+++++|+.
T Consensus 97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~l 176 (830)
T KOG4152|consen 97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYIL 176 (830)
T ss_pred EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEE
Confidence 9999887777787755544445677653 4567899999999999999999975421 357888888
Q ss_pred eCCCC----ceEEcc---CCCCCCCCcCCCCCEEEEE------CCEEEEEec----CCCeEEEEeCCCCceEEcc-----
Q 016421 257 DLETR----KWRKIE---GMYPNVNRAAQAPPLVAVV------DNQLYAVEY----LTNMVKKYDKLKNTWDVLG----- 314 (390)
Q Consensus 257 d~~~~----~W~~~~---~~~~~~~~~~~~~~~~~~~------~g~l~v~gg----~~~~v~~yd~~~~~W~~v~----- 314 (390)
++.-+ .|...- .+|. +|-.|.++.+ ..+||++|| .++++|.+|.++-.|.+..
T Consensus 177 eL~~Gsgvv~W~ip~t~Gv~P~-----pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~ 251 (830)
T KOG4152|consen 177 ELRPGSGVVAWDIPITYGVLPP-----PRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVA 251 (830)
T ss_pred EeccCCceEEEecccccCCCCC-----CcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCC
Confidence 87754 487542 3444 3444556655 347999997 4579999999999999854
Q ss_pred CCCccccCCCcceeEEEEeCCEEEEEcCCCCC---------C----CCeEEEeeecCCCCCCCCCCceEEecc------c
Q 016421 315 RLPVRADLSNGWGLAFKACGNELLVVGGQRGP---------E----GENVVLNSWCPKSGVNNGTLDWKVLAE------K 375 (390)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~---------~----~~~~~i~~y~~~~~~~~~~~~W~~~~~------~ 375 (390)
+||+.. |..+.+++++|||||+--- + ....++-|+++++ +.|..+-. .
T Consensus 252 PlPRSL-------Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt------~~W~tl~~d~~ed~t 318 (830)
T KOG4152|consen 252 PLPRSL-------HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDT------MAWETLLMDTLEDNT 318 (830)
T ss_pred CCCccc-------ccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecc------hheeeeeeccccccc
Confidence 344332 5677899999999996411 1 1345567888888 89987632 1
Q ss_pred CccCeEEeeeeeecC
Q 016421 376 QHVGVFVYNCAVLGC 390 (390)
Q Consensus 376 p~~~~~~~~~~~~~~ 390 (390)
.+..|..+|.+.||+
T Consensus 319 iPR~RAGHCAvAigt 333 (830)
T KOG4152|consen 319 IPRARAGHCAVAIGT 333 (830)
T ss_pred cccccccceeEEecc
Confidence 245567777777774
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.79 E-value=3.4e-17 Score=142.81 Aligned_cols=252 Identities=19% Similarity=0.264 Sum_probs=180.5
Q ss_pred ccEEEEEeC--CCeeEEEecC--CCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEccccc--------CCeEEEEECCC
Q 016421 97 EHWVYLVCD--PRGWEAFDPM--KKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF--------DFAIWKYSLVF 164 (390)
Q Consensus 97 ~~~l~~~~~--~~~~~~~d~~--~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~--------~~~~~~yd~~t 164 (390)
...+|+..+ ..+++..|+. ...|+.++..|...... ...+..+++||+|||..- .+++|+|||.+
T Consensus 46 g~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnq---a~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ 122 (381)
T COG3055 46 GDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQ---AVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST 122 (381)
T ss_pred cceEEEEeccCCccceehhhhcCCCCceEcccCCCccccc---chheeeCCeEEEeeccccCCCCCceEeeeeEEecCCC
Confidence 567888765 6788888887 45799999988754332 335678999999999541 26789999999
Q ss_pred CcEeecCC-CCCCCcceeeeeeCC-EEEEEeccCCCC---------------------------------CccceEEEEE
Q 016421 165 RSWMKCEG-MNHPRCLFGSGSLGS-IAIIAGGSDKNG---------------------------------HVLKSAELYD 209 (390)
Q Consensus 165 ~~W~~~~~-~~~~r~~~~~~~~~~-~lyv~GG~~~~~---------------------------------~~~~~~~~yd 209 (390)
++|..+.. .|.....+.++.+++ +||++||.+... ....++..||
T Consensus 123 nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~ 202 (381)
T COG3055 123 NSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD 202 (381)
T ss_pred ChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence 99998865 344455667777776 999999964210 0245799999
Q ss_pred CCCCcEEEcCCCCC-CCcCceEEEECCEEEEEecccCCCccCceEEEEeCC--CCceEEccCCCCCCCCcC--CCCCEEE
Q 016421 210 STTGRWEMLPSMHS-PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLE--TRKWRKIEGMYPNVNRAA--QAPPLVA 284 (390)
Q Consensus 210 ~~t~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~--~~~~~~~ 284 (390)
|.++.|+.+...|. ++++.+.+.-++++.++-|.-.++-+...+..++.. ..+|..+.++|.+..... -.++...
T Consensus 203 p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G 282 (381)
T COG3055 203 PSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSG 282 (381)
T ss_pred cccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccc
Confidence 99999999987775 455654445577799998887666555566677766 457999988877543321 1122233
Q ss_pred EECCEEEEEec------------------------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEE
Q 016421 285 VVDNQLYAVEY------------------------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVV 340 (390)
Q Consensus 285 ~~~g~l~v~gg------------------------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~ 340 (390)
..++.+.+.|| ..+.|+.+| .+.|+.+..||..+. +|+ .+..++.||+|
T Consensus 283 ~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~----YG~-s~~~nn~vl~I 355 (381)
T COG3055 283 KSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA----YGV-SLSYNNKVLLI 355 (381)
T ss_pred eeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc----ceE-EEecCCcEEEE
Confidence 45677777775 235788888 999999999998653 444 55789999999
Q ss_pred cCCCCCCCCeEEEeeecC
Q 016421 341 GGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 341 GG~~~~~~~~~~i~~y~~ 358 (390)
||..........++....
T Consensus 356 GGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 356 GGETSGGKATTRVYSLSW 373 (381)
T ss_pred ccccCCCeeeeeEEEEEE
Confidence 998877666666555433
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.66 E-value=3.1e-15 Score=130.75 Aligned_cols=193 Identities=19% Similarity=0.288 Sum_probs=150.3
Q ss_pred ecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCC--CcEEEcCCCCC-CCcCceEEEECCEEEEEecccC
Q 016421 169 KCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT--GRWEMLPSMHS-PRRLCSGFFMDGKFYVIGGMSS 245 (390)
Q Consensus 169 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~ 245 (390)
.+|++|.+...-+.+..++.+||--|..+. ..+..|++. ..|+++...|- +|.....++++++||++||...
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc
Confidence 457888887777777788999998885443 367777764 47999999886 5778888899999999999865
Q ss_pred CC----ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEec-------------------------
Q 016421 246 PT----VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEY------------------------- 295 (390)
Q Consensus 246 ~~----~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg------------------------- 295 (390)
.. ...+++++||+++++|+.+....+.. ..++..+.+++ ++|++||
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~g----l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~ 179 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTG----LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDK 179 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheeccccccc----cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHH
Confidence 32 34678999999999999987654421 23445677777 8999986
Q ss_pred --------------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCC
Q 016421 296 --------------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 296 --------------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~ 361 (390)
....+..|||++++|+.+...|.... +|.+++.-++++.+|.|...+.-++..++.++...
T Consensus 180 i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~----aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~- 254 (381)
T COG3055 180 IIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGN----AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGG- 254 (381)
T ss_pred HHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCc----cCcceeecCCeEEEEcceecCCccccceeEEEecc-
Confidence 23578899999999999987776553 45666666888999999998888888899999875
Q ss_pred CCCCCCceEEecccCcc
Q 016421 362 VNNGTLDWKVLAEKQHV 378 (390)
Q Consensus 362 ~~~~~~~W~~~~~~p~~ 378 (390)
...+|..++.+|..
T Consensus 255 ---~~~~w~~l~~lp~~ 268 (381)
T COG3055 255 ---DNLKWLKLSDLPAP 268 (381)
T ss_pred ---CceeeeeccCCCCC
Confidence 44689999887743
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.29 E-value=1e-11 Score=80.31 Aligned_cols=50 Identities=36% Similarity=0.642 Sum_probs=45.6
Q ss_pred CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCC
Q 016421 176 PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPR 225 (390)
Q Consensus 176 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 225 (390)
+|..+++++++++||++||........+++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 58889999999999999999875557899999999999999999999886
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.17 E-value=9.6e-11 Score=75.66 Aligned_cols=49 Identities=31% Similarity=0.474 Sum_probs=44.1
Q ss_pred CCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCC
Q 016421 224 PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPN 272 (390)
Q Consensus 224 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 272 (390)
+|..+++++++++||++||........+++++||+.+++|+++++||.+
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 5788999999999999999987555789999999999999999999873
No 31
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.13 E-value=4.9e-08 Score=85.34 Aligned_cols=198 Identities=10% Similarity=0.046 Sum_probs=118.5
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcce----eeeee-----CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCC-
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLF----GSGSL-----GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSP- 224 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~----~~~~~-----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~- 224 (390)
..+.++||.|++|..+|+++.++... ....+ ..||..+...... .....+++|++.+++|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccCCCCc
Confidence 57899999999999998755421111 11111 2366666543211 1345789999999999998743322
Q ss_pred CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEE-ccCCCCCCCCcCCCCCEEEEECCEEEEEecCC--C--e
Q 016421 225 RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK-IEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT--N--M 299 (390)
Q Consensus 225 r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~--~--~ 299 (390)
......+.++|.||.+....... ....+..||+.+++|.+ ++ +|..... ......++.++|+|.++.... . +
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~-~P~~~~~-~~~~~~L~~~~G~L~~v~~~~~~~~~~ 169 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIP-LPCGNSD-SVDYLSLINYKGKLAVLKQKKDTNNFD 169 (230)
T ss_pred cccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeee-cCccccc-cccceEEEEECCEEEEEEecCCCCcEE
Confidence 11223778899999997543221 12368999999999996 44 3332110 112346788899999986422 2 4
Q ss_pred EEEEe-CCCCceEEccCCCc--cccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 300 VKKYD-KLKNTWDVLGRLPV--RADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 300 v~~yd-~~~~~W~~v~~~~~--~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
||+.+ ...+.|++.-.++. ............+..+|+|++..+.. ....+..||+++
T Consensus 170 IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~----~~~~~~~y~~~~ 229 (230)
T TIGR01640 170 LWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE----NPFYIFYYNVGE 229 (230)
T ss_pred EEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC----CceEEEEEeccC
Confidence 55553 44567998654442 11111001123345688988888641 122488999976
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.09 E-value=7.4e-11 Score=107.45 Aligned_cols=197 Identities=17% Similarity=0.169 Sum_probs=133.5
Q ss_pred CCCCcEeecCCC----------CCCCcceeeeeeC--CEEEEEeccCCCCCccceEEEEECCCCcEEEcC---CCCCCCc
Q 016421 162 LVFRSWMKCEGM----------NHPRCLFGSGSLG--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP---SMHSPRR 226 (390)
Q Consensus 162 ~~t~~W~~~~~~----------~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~ 226 (390)
+.+..|.++++. |..|.+|.++.-. +-||+.||+++.. .+.++|.|+...+.|..+. ..|..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 446678777542 4678889888764 4999999999865 5899999999999998874 4677899
Q ss_pred CceEEEE--CCEEEEEecccCC-----CccCceEEEEeCCCCceEEccCCCC-CCCCcCCCCCEEEEECCE--EEEEecC
Q 016421 227 LCSGFFM--DGKFYVIGGMSSP-----TVSLTCGEEFDLETRKWRKIEGMYP-NVNRAAQAPPLVAVVDNQ--LYAVEYL 296 (390)
Q Consensus 227 ~~~~~~~--~~~iyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~g~--l~v~gg~ 296 (390)
.|.++.. ..++|+.|.+-.. ....+++|+||..++.|..+.--.. ...++.-+.+++++.+.+ +||+||.
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 9988865 4499999976331 1345789999999999997753222 122223456778888877 9999983
Q ss_pred --------CCeEEEEeCCCCceEEccCC-----CccccCCCcce--eEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 --------TNMVKKYDKLKNTWDVLGRL-----PVRADLSNGWG--LAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 --------~~~v~~yd~~~~~W~~v~~~-----~~~~~~~~~~~--~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...++.||.....|..++.- +......+..| .-.+.-+..+|++||...... ..-.++|++..
T Consensus 395 ~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E-l~L~f~y~I~~ 472 (723)
T KOG2437|consen 395 ILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE-LNLFFSYDIDS 472 (723)
T ss_pred eccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE-Eeehhcceecc
Confidence 35789999999999876521 11100001112 223344788999999763321 12244665443
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.08 E-value=1.8e-10 Score=73.36 Aligned_cols=47 Identities=36% Similarity=0.606 Sum_probs=42.7
Q ss_pred CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC
Q 016421 176 PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 176 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
+|..+++++++++||++||........+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 58899999999999999999886668999999999999999998876
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.05 E-value=3.5e-10 Score=72.04 Aligned_cols=47 Identities=30% Similarity=0.508 Sum_probs=42.3
Q ss_pred CCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCC
Q 016421 224 PRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMY 270 (390)
Q Consensus 224 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 270 (390)
+|..+++++++++||++||.+......+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 57889999999999999999886667899999999999999999876
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.91 E-value=4.1e-09 Score=67.57 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=42.1
Q ss_pred CCEEEEEeccC-CCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE
Q 016421 186 GSIAIIAGGSD-KNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232 (390)
Q Consensus 186 ~~~lyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 232 (390)
+++||++||.. ......+++++||+.+++|++++++|.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 57999999998 344578999999999999999999999999999875
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.88 E-value=5.9e-09 Score=66.83 Aligned_cols=47 Identities=36% Similarity=0.511 Sum_probs=41.0
Q ss_pred CCcCceEEEECCEEEEEecc--cCCCccCceEEEEeCCCCceEEccCCC
Q 016421 224 PRRLCSGFFMDGKFYVIGGM--SSPTVSLTCGEEFDLETRKWRKIEGMY 270 (390)
Q Consensus 224 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~v~~yd~~~~~W~~~~~~~ 270 (390)
+|..|++++++++||++||. .......+++++||+.+++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 57889999999999999999 444557889999999999999998764
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.88 E-value=6.6e-09 Score=66.59 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=40.9
Q ss_pred CCcceeeeeeCCEEEEEecc--CCCCCccceEEEEECCCCcEEEcCCCC
Q 016421 176 PRCLFGSGSLGSIAIIAGGS--DKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 176 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
+|..|++++++++|||+||+ .......+++++||+++++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58889999999999999999 333347899999999999999998775
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.86 E-value=4.3e-09 Score=67.57 Aligned_cols=47 Identities=34% Similarity=0.498 Sum_probs=31.8
Q ss_pred CCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCC
Q 016421 224 PRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMY 270 (390)
Q Consensus 224 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 270 (390)
+|..|+++.+ +++||++||.+.....++++++||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 5888999988 6899999999886668999999999999999997776
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.84 E-value=4e-09 Score=67.73 Aligned_cols=48 Identities=33% Similarity=0.536 Sum_probs=31.8
Q ss_pred CCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCC
Q 016421 176 PRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHS 223 (390)
Q Consensus 176 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 223 (390)
+|..|+++.+ +++||++||........+++++||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 5888999888 59999999998776679999999999999999988873
No 40
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.77 E-value=8.2e-07 Score=76.67 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=98.3
Q ss_pred EEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCC----CcEEEcC-CCCCCCcCceEE
Q 016421 157 IWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTT----GRWEMLP-SMHSPRRLCSGF 231 (390)
Q Consensus 157 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~~~r~~~~~~ 231 (390)
-..||+.+++++.+.......+...+..-+|.+.+.||.... ...+..|++.+ ..|.+.+ .|..+|.++++.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 457999999999876543333333334448999999998652 35677888875 5798875 588999998888
Q ss_pred EE-CCEEEEEecccCCCccCceEEEEeCCCC--ceEEccCCCC--CCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCC
Q 016421 232 FM-DGKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIEGMYP--NVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKL 306 (390)
Q Consensus 232 ~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~--~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~ 306 (390)
.+ ||+++|+||.... ..+.+..... ....+..+.. ......-+......-+|+||+++.. .-.+||+.
T Consensus 125 ~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~i~d~~ 197 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSIIYDYK 197 (243)
T ss_pred ECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcEEEeCC
Confidence 75 8999999998732 2233333221 1111111111 0000112233445568999999864 45678999
Q ss_pred CCce-EEccCCCcc
Q 016421 307 KNTW-DVLGRLPVR 319 (390)
Q Consensus 307 ~~~W-~~v~~~~~~ 319 (390)
++++ ..++.+|..
T Consensus 198 ~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 198 TNTVVRTLPDLPGG 211 (243)
T ss_pred CCeEEeeCCCCCCC
Confidence 9987 678888765
No 41
>smart00612 Kelch Kelch domain.
Probab=98.74 E-value=2.2e-08 Score=63.55 Aligned_cols=47 Identities=38% Similarity=0.634 Sum_probs=41.1
Q ss_pred EEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECC
Q 016421 188 IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG 235 (390)
Q Consensus 188 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 235 (390)
+||++||.... ...+++++||+.+++|+.+++|+.+|..++++.++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998653 457899999999999999999999999998888765
No 42
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.73 E-value=9.6e-06 Score=70.85 Aligned_cols=198 Identities=12% Similarity=0.033 Sum_probs=115.2
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCC-----EEEEEccc---ccCCeEEEEECCCCcEeecCCCCCC-C
Q 016421 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGS-----ELLVFGRE---LFDFAIWKYSLVFRSWMKCEGMNHP-R 177 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-----~iy~~Gg~---~~~~~~~~yd~~t~~W~~~~~~~~~-r 177 (390)
..+...||.+++|..+|+.+.+..........+..+. +|..+... .....+.+|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 5667899999999999865432111111012222221 44433321 1235788999999999998643321 1
Q ss_pred cceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE-cCCCCCCC----cCceEEEECCEEEEEecccCCCccCce
Q 016421 178 CLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-LPSMHSPR----RLCSGFFMDGKFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 178 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~ 252 (390)
.....+.++|.+|.+...... .....+..||..+.+|+. ++ +|... .....+.++|++.++....... .-.
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~ 169 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTN--NFD 169 (230)
T ss_pred ccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCC--cEE
Confidence 112266779999998754321 112369999999999995 53 34332 2345667899999887543211 235
Q ss_pred EEEEe-CCCCceEEccCCCC--CCCCcCCCCCEEEEECCEEEEEecC--CCeEEEEeCCCC
Q 016421 253 GEEFD-LETRKWRKIEGMYP--NVNRAAQAPPLVAVVDNQLYAVEYL--TNMVKKYDKLKN 308 (390)
Q Consensus 253 v~~yd-~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~g~l~v~gg~--~~~v~~yd~~~~ 308 (390)
+++.+ -....|+++-.++. .........+..+..+|+|++.... ..-+..||+.++
T Consensus 170 IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 170 LWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 66654 44567997654432 1111011123345677888887653 223889998875
No 43
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.57 E-value=1.7e-07 Score=60.00 Aligned_cols=47 Identities=30% Similarity=0.514 Sum_probs=38.6
Q ss_pred CCEEEEEeccc-CCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE
Q 016421 234 DGKFYVIGGMS-SPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV 285 (390)
Q Consensus 234 ~~~iyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 285 (390)
+++|||+||.+ .....++++++||+.+++|+++.++|. +|..+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~-----~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP-----PRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC-----CccceEEEE
Confidence 57999999998 345678999999999999999988877 556666654
No 44
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.56 E-value=4.5e-05 Score=69.90 Aligned_cols=38 Identities=5% Similarity=0.035 Sum_probs=34.4
Q ss_pred CCCCChHHHHHHHhhhcccc-chhhhHhhcHHHHHHhhc
Q 016421 46 LLPGLVDDVALNCLAFACTS-DYASLLFINKRFHKLIKS 83 (390)
Q Consensus 46 ~~~~LP~dl~~~iL~rlp~~-~l~~~~~V~k~w~~l~~s 83 (390)
.|+.||+||+..|..+||.. ++.++|+||+.||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 58999999999999999755 899999999999987764
No 45
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.55 E-value=6.3e-08 Score=61.40 Aligned_cols=42 Identities=17% Similarity=0.432 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchh
Q 016421 47 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYG 88 (390)
Q Consensus 47 ~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~ 88 (390)
|..||+|++.+||.+||..++.++..|||+|+.++.++.+.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998875543
No 46
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.54 E-value=1.8e-07 Score=85.88 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=120.6
Q ss_pred CCceeeCCCCCC------CcccCCCCeeEEEe--CCEEEEEccccc---CCeEEEEECCCCcEeec---CCCCCCCccee
Q 016421 116 KKKWMALPKIPC------DECFNHADKESLAV--GSELLVFGRELF---DFAIWKYSLVFRSWMKC---EGMNHPRCLFG 181 (390)
Q Consensus 116 ~~~W~~l~~~p~------~~~~~~~~~~~~~~--~~~iy~~Gg~~~---~~~~~~yd~~t~~W~~~---~~~~~~r~~~~ 181 (390)
+.+|.++++... .....+.++..+.. ++.||+.||.+. ..++|.|+...++|..+ ...|..|.+|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 557877654331 11112233444444 459999999763 35789999999999776 34789999999
Q ss_pred eeeeCC--EEEEEeccCCCC-----CccceEEEEECCCCcEEEcCC------CCCCCcCceEEEECCE--EEEEecccCC
Q 016421 182 SGSLGS--IAIIAGGSDKNG-----HVLKSAELYDSTTGRWEMLPS------MHSPRRLCSGFFMDGK--FYVIGGMSSP 246 (390)
Q Consensus 182 ~~~~~~--~lyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~------~~~~r~~~~~~~~~~~--iyv~GG~~~~ 246 (390)
++.... ++|+.|-+-+.+ ...+++|+||..++.|.-+.- -|...+.|.+++.+.+ |||+||+...
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~ 397 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT 397 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc
Confidence 987755 999999764322 145789999999999987642 2344567888887766 9999998642
Q ss_pred --CccCceEEEEeCCCCceEEccCCCC---CC--CCcCCCCCEE--EEECCEEEEEecCCC
Q 016421 247 --TVSLTCGEEFDLETRKWRKIEGMYP---NV--NRAAQAPPLV--AVVDNQLYAVEYLTN 298 (390)
Q Consensus 247 --~~~~~~v~~yd~~~~~W~~~~~~~~---~~--~~~~~~~~~~--~~~~g~l~v~gg~~~ 298 (390)
......++.||.....|..+..-.. +. ....|.++.+ ..-+..+|++||...
T Consensus 398 ~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 398 CNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred CCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 2345678999999999987642111 00 0012222222 234567899887443
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.46 E-value=1.1e-05 Score=70.86 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=62.9
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE
Q 016421 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK 331 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~ 331 (390)
++-++++.|..+... +.. .+.+.+...++|++.+-|.+-+.+..||.+.+.--++-.--... ..++
T Consensus 341 TikvW~~st~efvRt--l~g-----HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL-------vRci 406 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRT--LNG-----HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-------VRCI 406 (499)
T ss_pred eEEEEeccceeeehh--hhc-----ccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHh-------hhhe
Confidence 455677776655432 221 22344566789999999888899999999988765543222111 2355
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCC
Q 016421 332 ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNN 364 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~ 364 (390)
-.+++=+|-||+++ .|.+||..++.++
T Consensus 407 RFd~krIVSGaYDG------kikvWdl~aaldp 433 (499)
T KOG0281|consen 407 RFDNKRIVSGAYDG------KIKVWDLQAALDP 433 (499)
T ss_pred eecCceeeeccccc------eEEEEecccccCC
Confidence 67888889999886 5889999887666
No 48
>PLN02772 guanylate kinase
Probab=98.45 E-value=1.8e-06 Score=79.18 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc---CCCCCCCcCceEEEE-CCEEEEEecccCCCcc
Q 016421 174 NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML---PSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVS 249 (390)
Q Consensus 174 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 249 (390)
..++..++++.+++++||+||.+..+...+.+++||..|++|... +..|.+|.+|+++++ +++|+|+++.....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 357888999999999999999877554678999999999999774 567889999999988 68999998765532
Q ss_pred CceEEEEeCCC
Q 016421 250 LTCGEEFDLET 260 (390)
Q Consensus 250 ~~~v~~yd~~~ 260 (390)
.++|.....|
T Consensus 100 -~~~w~l~~~t 109 (398)
T PLN02772 100 -DSIWFLEVDT 109 (398)
T ss_pred -cceEEEEcCC
Confidence 5666666655
No 49
>smart00612 Kelch Kelch domain.
Probab=98.44 E-value=4.5e-07 Score=57.43 Aligned_cols=47 Identities=34% Similarity=0.559 Sum_probs=37.6
Q ss_pred EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC
Q 016421 236 KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN 288 (390)
Q Consensus 236 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g 288 (390)
+||++||.... ...+++++||+.+++|+.+++|+. .|..+++++++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~-----~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT-----PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC-----ccccceEEEeCC
Confidence 48999998653 357889999999999999999988 455556777664
No 50
>PF13854 Kelch_5: Kelch motif
Probab=98.34 E-value=1.5e-06 Score=53.39 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=35.7
Q ss_pred CCCCCcceeeeeeCCEEEEEeccCC-CCCccceEEEEECCCC
Q 016421 173 MNHPRCLFGSGSLGSIAIIAGGSDK-NGHVLKSAELYDSTTG 213 (390)
Q Consensus 173 ~~~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~yd~~t~ 213 (390)
+|.+|..|++++++++||++||... .....+++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4788999999999999999999984 5567899999998763
No 51
>PF13854 Kelch_5: Kelch motif
Probab=98.28 E-value=2.4e-06 Score=52.48 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=35.2
Q ss_pred CCCCCcCceEEEECCEEEEEecccC-CCccCceEEEEeCCC
Q 016421 221 MHSPRRLCSGFFMDGKFYVIGGMSS-PTVSLTCGEEFDLET 260 (390)
Q Consensus 221 ~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~ 260 (390)
+|.+|..|+++.++++||++||... .....+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4788999999999999999999984 556789999999876
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.27 E-value=0.0022 Score=60.85 Aligned_cols=235 Identities=12% Similarity=0.101 Sum_probs=134.5
Q ss_pred ccccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcc----cCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--
Q 016421 95 IVEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDEC----FNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS-- 166 (390)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~----~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~-- 166 (390)
..++.+|+......+.++|..+. .|..-..-..... ........+..++.||+.+. ...++.+|..+++
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~ald~~tG~~~ 143 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVYALNAEDGEVA 143 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---CCEEEEEECCCCCCc
Confidence 34778888876778899998755 5864221110000 00111224556788887543 3478999998764
Q ss_pred EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCC--CcCceEEEECCEEEEEec
Q 016421 167 WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSP--RRLCSGFFMDGKFYVIGG 242 (390)
Q Consensus 167 W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~GG 242 (390)
|+.-.. .. ...+.++.++.+|+..+ ...+..+|+.+++ |+.-...+.. +...+-+..++.+|+..+
T Consensus 144 W~~~~~--~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~ 213 (394)
T PRK11138 144 WQTKVA--GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD 213 (394)
T ss_pred ccccCC--Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC
Confidence 865322 11 11223455788887532 2358999999886 8774332221 222233456777777533
Q ss_pred ccCCCccCceEEEEeCCCC--ceEEccCCCCCCCC---cCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEccC
Q 016421 243 MSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNR---AAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGR 315 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~---~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~ 315 (390)
. ..+..+|+.++ .|+.-...+..... ........++.++.+|+.+. .+.++++|+.+++ |+.-
T Consensus 214 ~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g~l~ald~~tG~~~W~~~-- 283 (394)
T PRK11138 214 N-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NGNLVALDLRSGQIVWKRE-- 283 (394)
T ss_pred C-------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CCeEEEEECCCCCEEEeec--
Confidence 1 24677888876 48642221211000 00011223457899998763 4689999998874 8762
Q ss_pred CCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 316 LPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
.... ...+..+++||+..... .++++|+++ +...|+.
T Consensus 284 ~~~~--------~~~~~~~~~vy~~~~~g-------~l~ald~~t----G~~~W~~ 320 (394)
T PRK11138 284 YGSV--------NDFAVDGGRIYLVDQND-------RVYALDTRG----GVELWSQ 320 (394)
T ss_pred CCCc--------cCcEEECCEEEEEcCCC-------eEEEEECCC----CcEEEcc
Confidence 1111 12345789999987432 588999987 4456864
No 53
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.23 E-value=2.3e-05 Score=67.77 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=94.8
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceE-EEECCEEEEEecccCCCccCceEEEEeCCC----CceEEccC-CCCCCCCc
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSG-FFMDGKFYVIGGMSSPTVSLTCGEEFDLET----RKWRKIEG-MYPNVNRA 276 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~~-~~~~~~~~ 276 (390)
.....||+.+++++.+.- .......+. ..-||++.+.||...+ ...+..|++.+ ..|.+... |..
T Consensus 46 a~s~~yD~~tn~~rpl~v-~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~----- 116 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV-QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQS----- 116 (243)
T ss_pred EEEEEEecCCCcEEeccC-CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccC-----
Confidence 345689999999998753 333222233 3458999999998653 34566788765 67988764 665
Q ss_pred CCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCC------ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCC
Q 016421 277 AQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKN------TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGE 349 (390)
Q Consensus 277 ~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~------~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~ 349 (390)
.|..+.+.. -+|+++|+||..+..+.|.|... .|..+........... +=...+.-+|+||+++...
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nl-YP~~~llPdG~lFi~an~~----- 190 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNL-YPFVHLLPDGNLFIFANRG----- 190 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCcccc-CceEEEcCCCCEEEEEcCC-----
Confidence 455555554 58999999998766555655421 1222222111100000 1123345589999999854
Q ss_pred eEEEeeecCCCCCCCCCCce-EEecccCcc
Q 016421 350 NVVLNSWCPKSGVNNGTLDW-KVLAEKQHV 378 (390)
Q Consensus 350 ~~~i~~y~~~~~~~~~~~~W-~~~~~~p~~ 378 (390)
-.+||+.+ +++ +.++.+|..
T Consensus 191 ---s~i~d~~~------n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 191 ---SIIYDYKT------NTVVRTLPDLPGG 211 (243)
T ss_pred ---cEEEeCCC------CeEEeeCCCCCCC
Confidence 34789988 565 788888853
No 54
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.20 E-value=1e-06 Score=53.97 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=36.0
Q ss_pred ChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchh
Q 016421 50 LVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYG 88 (390)
Q Consensus 50 LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~ 88 (390)
||+|++.+|+.+|+..++.+++.|||+|+.++.++.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999998876653
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.20 E-value=0.0032 Score=59.73 Aligned_cols=222 Identities=15% Similarity=0.122 Sum_probs=129.1
Q ss_pred ccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--EeecCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~ 172 (390)
++.+|+......++++|..+. .|..-. +.... ...+..++.+|+..+ ...++.+|+.+++ |+.-..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~-----ssP~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV--AGEAL-----SRPVVSDGLVLVHTS---NGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccC--CCcee-----cCCEEECCEEEEECC---CCEEEEEEccCCCEeeeecCC
Confidence 567777655667899998755 586432 11110 112445778887543 3478999998876 766433
Q ss_pred CCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCC-----C---cCceEEEECCEEEEE
Q 016421 173 MNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSP-----R---RLCSGFFMDGKFYVI 240 (390)
Q Consensus 173 ~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-----r---~~~~~~~~~~~iyv~ 240 (390)
.+. .+...+.++.++.+|+..+ ...+..+|+.+++ |+.-...+.. + ...+-++.++.+|+.
T Consensus 190 ~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~ 262 (394)
T PRK11138 190 VPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL 262 (394)
T ss_pred CCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE
Confidence 221 1222233345677766432 1347788888875 8652211211 1 112334678999986
Q ss_pred ecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEccCC
Q 016421 241 GGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGRL 316 (390)
Q Consensus 241 GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~ 316 (390)
+. ...++++|+.+++ |+.-. .. . ...+..+++||+... .+.++++|+.+.+ |+.-. +
T Consensus 263 ~~-------~g~l~ald~~tG~~~W~~~~--~~-----~---~~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~-~ 323 (394)
T PRK11138 263 AY-------NGNLVALDLRSGQIVWKREY--GS-----V---NDFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSD-L 323 (394)
T ss_pred Ec-------CCeEEEEECCCCCEEEeecC--CC-----c---cCcEEECCEEEEEcC-CCeEEEEECCCCcEEEcccc-c
Confidence 42 1357889998864 87521 11 0 124567899998763 4689999998764 86421 1
Q ss_pred CccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 317 PVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
.. .. . .+.+..+++||+... ++ .++++|+.+ ++..|+.
T Consensus 324 ~~-~~----~-~sp~v~~g~l~v~~~-~G------~l~~ld~~t----G~~~~~~ 361 (394)
T PRK11138 324 LH-RL----L-TAPVLYNGYLVVGDS-EG------YLHWINRED----GRFVAQQ 361 (394)
T ss_pred CC-Cc----c-cCCEEECCEEEEEeC-CC------EEEEEECCC----CCEEEEE
Confidence 11 11 1 223457899987643 22 588899888 4556764
No 56
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.16 E-value=2.7e-07 Score=58.81 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=34.8
Q ss_pred CCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCch
Q 016421 47 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLY 87 (390)
Q Consensus 47 ~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~ 87 (390)
|..||+|++.+|+.+|+..++..++.|||+|++++.+..+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~ 43 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLW 43 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCcc
Confidence 56899999999999999999999999999999999886654
No 57
>PLN02772 guanylate kinase
Probab=98.06 E-value=4.5e-05 Score=70.21 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=59.4
Q ss_pred CCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecC---CC
Q 016421 223 SPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYL---TN 298 (390)
Q Consensus 223 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~---~~ 298 (390)
.++..++++.+++++||+||.+......+.+++||..+++|....-....+ .+|-++.++++ +++|+|+++. ..
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P--~~r~GhSa~v~~~~rilv~~~~~~~~~ 100 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP--KPCKGYSAVVLNKDRILVIKKGSAPDD 100 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCC--CCCCcceEEEECCceEEEEeCCCCCcc
Confidence 367778999999999999998775435788999999999998754322111 14556667766 6899999743 24
Q ss_pred eEEEEeCCC
Q 016421 299 MVKKYDKLK 307 (390)
Q Consensus 299 ~v~~yd~~~ 307 (390)
++|.....|
T Consensus 101 ~~w~l~~~t 109 (398)
T PLN02772 101 SIWFLEVDT 109 (398)
T ss_pred ceEEEEcCC
Confidence 566665444
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.04 E-value=0.0072 Score=52.73 Aligned_cols=192 Identities=18% Similarity=0.161 Sum_probs=113.4
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-- 214 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-- 214 (390)
+..++.+|+.. ....++.+|+.+++ |+.-. +.+.. ......++.+|+..+ ...+..+|..+++
T Consensus 33 ~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~--~~~~~-~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 33 VPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDL--PGPIS-GAPVVDGGRVYVGTS-------DGSLYALDAKTGKVL 99 (238)
T ss_dssp EEETTEEEEEE---TTSEEEEEETTTSEEEEEEEC--SSCGG-SGEEEETTEEEEEET-------TSEEEEEETTTSCEE
T ss_pred EEeCCEEEEEc---CCCEEEEEECCCCCEEEEeec--ccccc-ceeeecccccccccc-------eeeeEecccCCccee
Confidence 34688888874 35689999998886 65432 22222 224667899988862 1368999988885
Q ss_pred EE-EcCCCCCC--CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCC---cCCCCCEEEEE
Q 016421 215 WE-MLPSMHSP--RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNR---AAQAPPLVAVV 286 (390)
Q Consensus 215 W~-~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~---~~~~~~~~~~~ 286 (390)
|+ .....+.. .......+.++.+|+... ...+..+|+++++ |..-...+..... ........+..
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS 172 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC
T ss_pred eeeccccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE
Confidence 98 44332222 223344455777777643 3457889998775 7654333321110 00011223445
Q ss_pred CCEEEEEecCCCeEEEEeCCCCc--eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCC
Q 016421 287 DNQLYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNN 364 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~ 364 (390)
++.+|+..+... +..+|..+++ |+.. +.... ......++.||+.. .++ .++++|+.+
T Consensus 173 ~~~v~~~~~~g~-~~~~d~~tg~~~w~~~--~~~~~-------~~~~~~~~~l~~~~-~~~------~l~~~d~~t---- 231 (238)
T PF13360_consen 173 DGRVYVSSGDGR-VVAVDLATGEKLWSKP--ISGIY-------SLPSVDGGTLYVTS-SDG------RLYALDLKT---- 231 (238)
T ss_dssp TTEEEEECCTSS-EEEEETTTTEEEEEEC--SS-EC-------ECEECCCTEEEEEE-TTT------EEEEEETTT----
T ss_pred CCEEEEEcCCCe-EEEEECCCCCEEEEec--CCCcc-------CCceeeCCEEEEEe-CCC------EEEEEECCC----
Confidence 688888865444 5566999987 8443 22111 11345678888888 332 689999999
Q ss_pred CCCceEE
Q 016421 365 GTLDWKV 371 (390)
Q Consensus 365 ~~~~W~~ 371 (390)
++..|+.
T Consensus 232 G~~~W~~ 238 (238)
T PF13360_consen 232 GKVVWQQ 238 (238)
T ss_dssp TEEEEEE
T ss_pred CCEEeEC
Confidence 5667864
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.87 E-value=0.025 Score=53.33 Aligned_cols=221 Identities=18% Similarity=0.187 Sum_probs=121.5
Q ss_pred ccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--EeecCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEG 172 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~ 172 (390)
...+|+......++++|+.+. .|..-. +.... ...+..++.+|+..+ ...++.+|+.+++ |+.-..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~-----~~p~v~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVL-----SPPLVANGLVVVRTN---DGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeecc--Cceee-----cCCEEECCEEEEECC---CCeEEEEEcCCCceeeEEccC
Confidence 456666555567788887654 475422 11100 112334667776543 3568899998764 765322
Q ss_pred CCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCC-----C---cCceEEEECCEEEEE
Q 016421 173 MNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSP-----R---RLCSGFFMDGKFYVI 240 (390)
Q Consensus 173 ~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-----r---~~~~~~~~~~~iyv~ 240 (390)
.+. .+.....+..++.+|+ |..+ ..+..+|+.+++ |+.-...+.. + ...+.+..++.+|+.
T Consensus 175 ~~~~~~~~~~sp~~~~~~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~ 247 (377)
T TIGR03300 175 TPALTLRGSASPVIADGGVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV 247 (377)
T ss_pred CCceeecCCCCCEEECCEEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEE
Confidence 221 1222233445665554 3321 357889998874 8642211111 0 112334568888886
Q ss_pred ecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCC--ceEEccCC
Q 016421 241 GGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKN--TWDVLGRL 316 (390)
Q Consensus 241 GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~--~W~~v~~~ 316 (390)
.. ...+++||+.+++ |..-. .. ....++.++++|+.. ..+.++++|..++ .|+.-. +
T Consensus 248 ~~-------~g~l~a~d~~tG~~~W~~~~--~~--------~~~p~~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~-~ 308 (377)
T TIGR03300 248 SY-------QGRVAALDLRSGRVLWKRDA--SS--------YQGPAVDDNRLYVTD-ADGVVVALDRRSGSELWKNDE-L 308 (377)
T ss_pred Ec-------CCEEEEEECCCCcEEEeecc--CC--------ccCceEeCCEEEEEC-CCCeEEEEECCCCcEEEcccc-c
Confidence 42 2357889998764 76421 11 112446788988875 3468999999876 486521 2
Q ss_pred CccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceE
Q 016421 317 PVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWK 370 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~ 370 (390)
.... . ...+..+++||+.. .++ .++++|+++ ++..|+
T Consensus 309 ~~~~-----~-ssp~i~g~~l~~~~-~~G------~l~~~d~~t----G~~~~~ 345 (377)
T TIGR03300 309 KYRQ-----L-TAPAVVGGYLVVGD-FEG------YLHWLSRED----GSFVAR 345 (377)
T ss_pred cCCc-----c-ccCEEECCEEEEEe-CCC------EEEEEECCC----CCEEEE
Confidence 1111 1 12234678888754 222 588899887 445564
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.75 E-value=0.04 Score=51.90 Aligned_cols=227 Identities=17% Similarity=0.111 Sum_probs=127.2
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--EeecC
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCE 171 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~ 171 (390)
.++.+|+......+++||+.+. .|..-..-.. ....+..++.+|+.+. ...++.+|+.+++ |+.-.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~-------~~~p~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL-------SGGVGADGGLVFVGTE---KGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc-------ccceEEcCCEEEEEcC---CCEEEEEECCCCcEeeeecc
Confidence 4677887766678999998755 4754221111 0123445677776543 3578999987765 76532
Q ss_pred CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCC--CCcCceEEEECCEEEEEecccCCC
Q 016421 172 GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHS--PRRLCSGFFMDGKFYVIGGMSSPT 247 (390)
Q Consensus 172 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~ 247 (390)
. .. .....+..++.+|+..+ ...+..+|+.+++ |+.-...+. .+...+.+..++.+|+. ..
T Consensus 134 ~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~-~~---- 198 (377)
T TIGR03300 134 S--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVG-FA---- 198 (377)
T ss_pred C--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEE-CC----
Confidence 1 11 11223345777777532 2348899998875 876432221 12223345567766543 22
Q ss_pred ccCceEEEEeCCCC--ceEEccCCCCCCCCc---CCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eEEccCCCccc
Q 016421 248 VSLTCGEEFDLETR--KWRKIEGMYPNVNRA---AQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRA 320 (390)
Q Consensus 248 ~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~---~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~ 320 (390)
...+..+|+.++ .|+.-...+...... .......++.++.+|+.+ ..+.+++||+++++ |..-. +.
T Consensus 199 --~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~-~~g~l~a~d~~tG~~~W~~~~--~~-- 271 (377)
T TIGR03300 199 --GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS-YQGRVAALDLRSGRVLWKRDA--SS-- 271 (377)
T ss_pred --CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE-cCCEEEEEECCCCcEEEeecc--CC--
Confidence 125778998776 476432211110000 001122345678888865 34689999998764 86631 11
Q ss_pred cCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE
Q 016421 321 DLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV 371 (390)
Q Consensus 321 ~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~ 371 (390)
. ...+..+++||+..... .++++|+.+ +...|+.
T Consensus 272 -----~-~~p~~~~~~vyv~~~~G-------~l~~~d~~t----G~~~W~~ 305 (377)
T TIGR03300 272 -----Y-QGPAVDDNRLYVTDADG-------VVVALDRRS----GSELWKN 305 (377)
T ss_pred -----c-cCceEeCCEEEEECCCC-------eEEEEECCC----CcEEEcc
Confidence 0 12345689999876321 588999877 4456865
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.75 E-value=0.024 Score=49.37 Aligned_cols=182 Identities=19% Similarity=0.207 Sum_probs=109.8
Q ss_pred cccEEEEEeCCCeeEEEecCCCc--eeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--Ee-ec
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKKK--WMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--WM-KC 170 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~-~~ 170 (390)
.+..+|+......++++|+.+.+ |..-. +.+... ..+..++.+|+... .+.++.+|..+++ |+ ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~-----~~~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISG-----APVVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGS-----GEEEETTEEEEEET---TSEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccc-----eeeecccccccccc---eeeeEecccCCcceeeeecc
Confidence 46777877778899999997664 65432 221111 13567888888763 2388999988775 87 34
Q ss_pred CCCCCC--CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCCc--------CceEEEECCEEE
Q 016421 171 EGMNHP--RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPRR--------LCSGFFMDGKFY 238 (390)
Q Consensus 171 ~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~--------~~~~~~~~~~iy 238 (390)
...+.. .........++.+|+... ...+..+|+.+++ |+.-...+.... ....+..++.+|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp -SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEE
T ss_pred ccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEE
Confidence 332222 222334445777777643 3458999999886 766433332111 122233468888
Q ss_pred EEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc--eE
Q 016421 239 VIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT--WD 311 (390)
Q Consensus 239 v~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~--W~ 311 (390)
+..+... +..+|..+++ |+.. +.. ........++.||+.. ..+.+.++|+.+++ |+
T Consensus 178 ~~~~~g~-------~~~~d~~tg~~~w~~~--~~~-------~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 178 VSSGDGR-------VVAVDLATGEKLWSKP--ISG-------IYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EECCTSS-------EEEEETTTTEEEEEEC--SS--------ECECEECCCTEEEEEE-TTTEEEEEETTTTEEEEE
T ss_pred EEcCCCe-------EEEEECCCCCEEEEec--CCC-------ccCCceeeCCEEEEEe-CCCEEEEEECCCCCEEeE
Confidence 8754321 4556999987 8433 211 0111456678888887 67899999999985 65
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.59 E-value=0.003 Score=58.46 Aligned_cols=124 Identities=22% Similarity=0.275 Sum_probs=79.2
Q ss_pred eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccC----ceEEEE--eC
Q 016421 185 LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSL----TCGEEF--DL 258 (390)
Q Consensus 185 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~v~~y--d~ 258 (390)
.+++|+.++.. ..+.+||..+..-...|.++.+.....++.++++||++.......... ..++++ ++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 58899988553 237899999999888888888776677778899999998664321110 144444 42
Q ss_pred --------CCCceEEccCCCCCCCCcCC--CCCEEEEE-CCEEEE-EecCCCeEEEEeCCCCceEEccC
Q 016421 259 --------ETRKWRKIEGMYPNVNRAAQ--APPLVAVV-DNQLYA-VEYLTNMVKKYDKLKNTWDVLGR 315 (390)
Q Consensus 259 --------~~~~W~~~~~~~~~~~~~~~--~~~~~~~~-~g~l~v-~gg~~~~v~~yd~~~~~W~~v~~ 315 (390)
..-.|..+++.|........ ...+-+++ +..|+| +.+.....+.||.++.+|+++..
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence 12257777664432211100 02233455 556666 43322469999999999999974
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.51 E-value=0.0046 Score=57.22 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=81.6
Q ss_pred EEEe-CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCc------cceEEEEEC
Q 016421 138 SLAV-GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHV------LKSAELYDS 210 (390)
Q Consensus 138 ~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~------~~~~~~yd~ 210 (390)
.+++ +++|+..+.. ..+.+||..|..-...|.++.+.....++.++++||++......... .-++..|++
T Consensus 71 F~al~gskIv~~d~~---~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS---GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred EEEecCCeEEEEcCC---CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 3444 8888888654 35789999999998888887777777777889999999876432211 223334442
Q ss_pred --------CCCcEEEcCCCCCCCcC-------ceEEEE-CCEEEEE-ecccCCCccCceEEEEeCCCCceEEccCC
Q 016421 211 --------TTGRWEMLPSMHSPRRL-------CSGFFM-DGKFYVI-GGMSSPTVSLTCGEEFDLETRKWRKIEGM 269 (390)
Q Consensus 211 --------~t~~W~~~~~~~~~r~~-------~~~~~~-~~~iyv~-GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 269 (390)
.+-.|+.+++.|..+.. .+-+++ +..|+|- .+.. ...+.||+.+.+|+.+.+.
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccce
Confidence 22358888876654332 233455 5577773 2211 2478899999999998753
No 64
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.44 E-value=0.012 Score=51.92 Aligned_cols=205 Identities=14% Similarity=0.096 Sum_probs=112.6
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++.+|+.. .....++++++.++.-....... ..+++.. ++.+|+... ....++|+.+++++.+.
T Consensus 11 ~g~l~~~D--~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 11 DGRLYWVD--IPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp TTEEEEEE--TTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTEEEEEE
T ss_pred CCEEEEEE--cCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCcEEEEe
Confidence 46666653 23468999999998765543322 2334443 688888854 22466799999998876
Q ss_pred CCCC---C--CcCceEEEECCEEEEEecccCCCccC--ceEEEEeCCCCceEEccC-CCCCCCCcCCCCCEEEEE-CC-E
Q 016421 220 SMHS---P--RRLCSGFFMDGKFYVIGGMSSPTVSL--TCGEEFDLETRKWRKIEG-MYPNVNRAAQAPPLVAVV-DN-Q 289 (390)
Q Consensus 220 ~~~~---~--r~~~~~~~~~~~iyv~GG~~~~~~~~--~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~-~g-~ 289 (390)
..+. + +.+-.++.-+|+||+-.-........ ..++++++. .+...+.. +..+ ..++.. ++ .
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p--------NGi~~s~dg~~ 147 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP--------NGIAFSPDGKT 147 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE--------EEEEEETTSSE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc--------cceEECCcchh
Confidence 5532 2 22222233478988864322211112 568999999 66655432 2111 124433 34 6
Q ss_pred EEEEecCCCeEEEEeCCCCc--eEE---ccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCC
Q 016421 290 LYAVEYLTNMVKKYDKLKNT--WDV---LGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKSGVN 363 (390)
Q Consensus 290 l~v~gg~~~~v~~yd~~~~~--W~~---v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~ 363 (390)
||+.....+.|++||+.... +.. +..++.... .--+++ --+|+||+..-..+ .|.+|+++-
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g----~pDG~~vD~~G~l~va~~~~~------~I~~~~p~G--- 214 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG----YPDGLAVDSDGNLWVADWGGG------RIVVFDPDG--- 214 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC----EEEEEEEBTTS-EEEEEETTT------EEEEEETTS---
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCc----CCCcceEcCCCCEEEEEcCCC------EEEEECCCc---
Confidence 88888888899999986443 332 223332210 001232 34789999843221 589999985
Q ss_pred CCCCceEEecccCccCeEEeeeeee
Q 016421 364 NGTLDWKVLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 364 ~~~~~W~~~~~~p~~~~~~~~~~~~ 388 (390)
..-..+. +| ...+.+|+.-
T Consensus 215 ---~~~~~i~-~p--~~~~t~~~fg 233 (246)
T PF08450_consen 215 ---KLLREIE-LP--VPRPTNCAFG 233 (246)
T ss_dssp ---CEEEEEE--S--SSSEEEEEEE
T ss_pred ---cEEEEEc-CC--CCCEEEEEEE
Confidence 3444444 32 2255566653
No 65
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.18 E-value=0.0083 Score=52.05 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=68.8
Q ss_pred EEEEEeccCCCCCccceEEEEECCCCc--------EE---EcCCCCCCCcCceEEEE--CC--EEEEEecccCCCccCce
Q 016421 188 IAIIAGGSDKNGHVLKSAELYDSTTGR--------WE---MLPSMHSPRRLCSGFFM--DG--KFYVIGGMSSPTVSLTC 252 (390)
Q Consensus 188 ~lyv~GG~~~~~~~~~~~~~yd~~t~~--------W~---~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~ 252 (390)
.-++.||...+....+++++....+.. ++ .++++|.+|++|++-++ .| ...+|||++--....
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q-- 117 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ-- 117 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc--
Confidence 334558887776666777766554332 21 15789999999987654 33 467788875311111
Q ss_pred EEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE--ccCCCccccCCCcceeEE
Q 016421 253 GEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV--LGRLPVRADLSNGWGLAF 330 (390)
Q Consensus 253 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~--v~~~~~~~~~~~~~~~~~ 330 (390)
-.|+.|..+-+-++ ++|+++ ++-+..+. ++.+..+..+ +..
T Consensus 118 -----RTTenWNsVvDC~P-----------------~VfLiD----------leFGC~tah~lpEl~dG~SF-----Hvs 160 (337)
T PF03089_consen 118 -----RTTENWNSVVDCPP-----------------QVFLID----------LEFGCCTAHTLPELQDGQSF-----HVS 160 (337)
T ss_pred -----cchhhcceeccCCC-----------------eEEEEe----------ccccccccccchhhcCCeEE-----EEE
Confidence 13567876554333 445554 33333322 3444444432 445
Q ss_pred EEeCCEEEEEcCCCC
Q 016421 331 KACGNELLVVGGQRG 345 (390)
Q Consensus 331 ~~~~~~lyv~GG~~~ 345 (390)
.+-+|.+|++||..-
T Consensus 161 lar~D~VYilGGHsl 175 (337)
T PF03089_consen 161 LARNDCVYILGGHSL 175 (337)
T ss_pred EecCceEEEEccEEc
Confidence 577999999999653
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.10 E-value=0.16 Score=49.88 Aligned_cols=283 Identities=14% Similarity=0.149 Sum_probs=139.1
Q ss_pred CCCCCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCchhhh--hhcCccc---cEEEEEeCC------Cee
Q 016421 41 GPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLR--KQLGIVE---HWVYLVCDP------RGW 109 (390)
Q Consensus 41 ~~~~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~~~r--~~~~~~~---~~l~~~~~~------~~~ 109 (390)
......+..||.++...||..|+.+.+..++.||+.|+.++.+....... ....... .+-...... ...
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~ 181 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSF 181 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhh
Confidence 34566899999999999999999999999999999999998876654321 1111100 000000000 000
Q ss_pred EE-EecCCCceeeCCCCCCCcccCCCCeeEE--Ee-CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee
Q 016421 110 EA-FDPMKKKWMALPKIPCDECFNHADKESL--AV-GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL 185 (390)
Q Consensus 110 ~~-~d~~~~~W~~l~~~p~~~~~~~~~~~~~--~~-~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 185 (390)
+. .....+.|.............+....++ .. ++.++ . |. ..+.+.+||..+..-...+.--..-.-.+....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~-~-~s-~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~ 258 (537)
T KOG0274|consen 182 YRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFK-S-GS-DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFP 258 (537)
T ss_pred hhhhhhccccccccccccceeecccCcchhhhheeecCeEE-e-cC-CCceeEEeecccceEEEeeccCCCCCceeEEEe
Confidence 00 1111223433221111111111111111 11 22221 1 21 233456777766544332111111111122222
Q ss_pred -CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016421 186 -GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 186 -~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
++.+++.|-.+ .++.+.|..++....+-. .......+...+..+.++|. .-..|.++|..+..--
T Consensus 259 ~~~~~lvsgS~D------~t~rvWd~~sg~C~~~l~---gh~stv~~~~~~~~~~~sgs-----~D~tVkVW~v~n~~~l 324 (537)
T KOG0274|consen 259 SGGDKLVSGSTD------KTERVWDCSTGECTHSLQ---GHTSSVRCLTIDPFLLVSGS-----RDNTVKVWDVTNGACL 324 (537)
T ss_pred cCCCEEEEEecC------CcEEeEecCCCcEEEEec---CCCceEEEEEccCceEeecc-----CCceEEEEeccCcceE
Confidence 35555555433 346778888888776532 11111222233444444432 2345777888866554
Q ss_pred EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCC-EEEEEcCC
Q 016421 265 KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGN-ELLVVGGQ 343 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~ 343 (390)
.+-.-.. .....+.+++.+.+.|...+.|-+||+.+.+--. .+.. +.+. .....+++ ..++-|..
T Consensus 325 ~l~~~h~-------~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~--sl~g----H~~~-V~sl~~~~~~~~~Sgs~ 390 (537)
T KOG0274|consen 325 NLLRGHT-------GPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLK--SLSG----HTGR-VYSLIVDSENRLLSGSL 390 (537)
T ss_pred EEecccc-------ccEEEEEecCCEEEEEecCceEEEEEhhhceeee--eecC----Ccce-EEEEEecCcceEEeeee
Confidence 3322110 1123456677778888777899999998655333 2211 1111 22234566 55555554
Q ss_pred CCCCCCeEEEeeecCCC
Q 016421 344 RGPEGENVVLNSWCPKS 360 (390)
Q Consensus 344 ~~~~~~~~~i~~y~~~~ 360 (390)
+ ..|.+||+++
T Consensus 391 D------~~IkvWdl~~ 401 (537)
T KOG0274|consen 391 D------TTIKVWDLRT 401 (537)
T ss_pred c------cceEeecCCc
Confidence 4 2588899887
No 67
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.99 E-value=0.042 Score=49.05 Aligned_cols=163 Identities=14% Similarity=0.250 Sum_probs=88.7
Q ss_pred EEEEeccCCCCC-ccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEc
Q 016421 189 AIIAGGSDKNGH-VLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI 266 (390)
Q Consensus 189 lyv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 266 (390)
|||-|-+...+. ....+-.||..+.+|.....--... -...... ++++|+.|.....+.....+..||.++.+|+.+
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~ 79 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL 79 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec
Confidence 345444443332 4677889999999999875431111 1122233 778888886554332356688899999999988
Q ss_pred cCCC-CCCCCcCCCCCEEEE---ECCEEEEEecC---CCeEEEEeCCCCceEEccC-CCccccCCCcceeEEEEe-----
Q 016421 267 EGMY-PNVNRAAQAPPLVAV---VDNQLYAVEYL---TNMVKKYDKLKNTWDVLGR-LPVRADLSNGWGLAFKAC----- 333 (390)
Q Consensus 267 ~~~~-~~~~~~~~~~~~~~~---~~g~l~v~gg~---~~~v~~yd~~~~~W~~v~~-~~~~~~~~~~~~~~~~~~----- 333 (390)
..-. .... .+ .....+ -...+++.|.. ...+..| +..+|+.+.. .-..... ..+..++.+
T Consensus 80 ~~~~s~~ip-gp--v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~~~~~~~t~--I~~l~~~~l~~~~~ 152 (281)
T PF12768_consen 80 GGGSSNSIP-GP--VTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGSDILGSGTT--IRGLQVLPLNSSSH 152 (281)
T ss_pred CCcccccCC-Cc--EEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccccccCCCCE--EEEEEEEecccccc
Confidence 7622 1000 01 011222 12357777642 3456677 4779999875 2111110 011223322
Q ss_pred -------CCEEEEEcCC-CCCCCCeEEEeeecCC
Q 016421 334 -------GNELLVVGGQ-RGPEGENVVLNSWCPK 359 (390)
Q Consensus 334 -------~~~lyv~GG~-~~~~~~~~~i~~y~~~ 359 (390)
++++.++-|. .-+.....+...||-.
T Consensus 153 ~~~~~~~~~~~Llv~G~l~~~~~G~~saalydG~ 186 (281)
T PF12768_consen 153 DNSSLFDSDQVLLVTGSLNLPDFGNASAALYDGT 186 (281)
T ss_pred ccccccCCCcEEEEEeeEecCCCCcEEEEEECCC
Confidence 4556666664 3344344456678774
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0012 Score=57.98 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=39.5
Q ss_pred CCCCCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCCch
Q 016421 44 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLY 87 (390)
Q Consensus 44 ~~~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~~~ 87 (390)
...|-+||||+++.|++.||.+.|.++..|||+|+++-++..++
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 34588999999999999999999999999999999988876654
No 69
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.71 E-value=0.68 Score=45.29 Aligned_cols=259 Identities=16% Similarity=0.135 Sum_probs=129.0
Q ss_pred ccccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcc-cCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCc--Ee
Q 016421 95 IVEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDEC-FNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRS--WM 168 (390)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~-~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~--W~ 168 (390)
..+..+|+......++++|+.+. .|..-...+.... ...........+ +.||+... ...++.+|..|++ |+
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---DGRLVALDAETGKQVWK 135 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---CCeEEEEECCCCCEeee
Confidence 34677888766678899998855 4865332221000 000011122335 77776543 3578889998765 76
Q ss_pred ecCCCCCCC---cceeeeeeCCEEEEEeccCCCC---CccceEEEEECCCCc--EEEcCCCC----CCC-----------
Q 016421 169 KCEGMNHPR---CLFGSGSLGSIAIIAGGSDKNG---HVLKSAELYDSTTGR--WEMLPSMH----SPR----------- 225 (390)
Q Consensus 169 ~~~~~~~~r---~~~~~~~~~~~lyv~GG~~~~~---~~~~~~~~yd~~t~~--W~~~~~~~----~~r----------- 225 (390)
.-...+... ...+.++.++.+|+ |...... .....+..+|..|++ |+.-...+ .+.
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred ecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 543221101 11233445666664 4322110 123568999999885 87522111 110
Q ss_pred ---cCceEEE--ECCEEEEEecccC-----------CCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEE--
Q 016421 226 ---RLCSGFF--MDGKFYVIGGMSS-----------PTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAV-- 285 (390)
Q Consensus 226 ---~~~~~~~--~~~~iyv~GG~~~-----------~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~-- 285 (390)
...+.+. -++.||+-.+... .......++.+|..+.+ |+.-...+..........+.+..
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 0011222 2567777644321 11223579999998874 87432211110000111122221
Q ss_pred -ECCE---EEEEecCCCeEEEEeCCCCc--eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCC-----------CCC
Q 016421 286 -VDNQ---LYAVEYLTNMVKKYDKLKNT--WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRG-----------PEG 348 (390)
Q Consensus 286 -~~g~---l~v~gg~~~~v~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-----------~~~ 348 (390)
.+|. +.+++...+.++.+|.++.+ |+.-.... .+....+.+|+-..... ...
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~-----------~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~ 363 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ-----------PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKP 363 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc-----------ccccCCceEEEccccccccCcccccCCCCCC
Confidence 2332 45556667889999999985 87532100 01122366776432110 011
Q ss_pred CeEEEeeecCCCCCCCCCCceEEe
Q 016421 349 ENVVLNSWCPKSGVNNGTLDWKVL 372 (390)
Q Consensus 349 ~~~~i~~y~~~~~~~~~~~~W~~~ 372 (390)
....+.++|..+ ++..|+.-
T Consensus 364 ~~G~l~AlD~~t----G~~~W~~~ 383 (488)
T cd00216 364 GKGGLAALDPKT----GKVVWEKR 383 (488)
T ss_pred CceEEEEEeCCC----CcEeeEee
Confidence 233588899988 56779864
No 70
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.44 E-value=0.091 Score=46.00 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=73.0
Q ss_pred ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEE
Q 016421 233 MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDV 312 (390)
Q Consensus 233 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~ 312 (390)
.+|.+|.-.|.-+ .+.+..||+.+++-....+++.. -++=+++.++++||.+--..+...+||+++ .+.
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~-----~FgEGit~~~d~l~qLTWk~~~~f~yd~~t--l~~ 122 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPR-----YFGEGITILGDKLYQLTWKEGTGFVYDPNT--LKK 122 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT-------EEEEEEETTEEEEEESSSSEEEEEETTT--TEE
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCcc-----ccceeEEEECCEEEEEEecCCeEEEEcccc--ceE
Confidence 5789999877643 45688899999987766666663 233368999999999998888999999875 556
Q ss_pred ccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 313 LGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+...+-+. -|||.+ ..+..|++-.|.+ .++.+||++
T Consensus 123 ~~~~~y~~---EGWGLt--~dg~~Li~SDGS~-------~L~~~dP~~ 158 (264)
T PF05096_consen 123 IGTFPYPG---EGWGLT--SDGKRLIMSDGSS-------RLYFLDPET 158 (264)
T ss_dssp EEEEE-SS---S--EEE--ECSSCEEEE-SSS-------EEEEE-TTT
T ss_pred EEEEecCC---cceEEE--cCCCEEEEECCcc-------ceEEECCcc
Confidence 66554432 267754 6778899888855 577888865
No 71
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=96.41 E-value=0.59 Score=40.97 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=55.4
Q ss_pred cCCCCCCCcceeeeee----CCEEEEEeccCCC--C-----------CccceEEEEECCCCcEEE--cCCCCCCCcCceE
Q 016421 170 CEGMNHPRCLFGSGSL----GSIAIIAGGSDKN--G-----------HVLKSAELYDSTTGRWEM--LPSMHSPRRLCSG 230 (390)
Q Consensus 170 ~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~--~-----------~~~~~~~~yd~~t~~W~~--~~~~~~~r~~~~~ 230 (390)
+...|.+|++|.+.++ +.-.++|||..-- + ...-.|+..|++-+.++. ++.+......|.+
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvs 160 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVS 160 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEE
Confidence 4578999999988766 2356777886311 1 023458888998887754 5667777777888
Q ss_pred EEECCEEEEEecccC
Q 016421 231 FFMDGKFYVIGGMSS 245 (390)
Q Consensus 231 ~~~~~~iyv~GG~~~ 245 (390)
.+-++.+|++||+.-
T Consensus 161 lar~D~VYilGGHsl 175 (337)
T PF03089_consen 161 LARNDCVYILGGHSL 175 (337)
T ss_pred EecCceEEEEccEEc
Confidence 888999999999864
No 72
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.35 E-value=0.63 Score=40.74 Aligned_cols=187 Identities=11% Similarity=0.081 Sum_probs=102.2
Q ss_pred CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceee-ee
Q 016421 106 PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGS-GS 184 (390)
Q Consensus 106 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~-~~ 184 (390)
.+.+..+|+++..-++.+ +|...........++--.+.++..|.... -=+.||.++.-+..+.+ ......++ +.
T Consensus 123 ~~aI~R~dpkt~evt~f~-lp~~~a~~nlet~vfD~~G~lWFt~q~G~---yGrLdPa~~~i~vfpaP-qG~gpyGi~at 197 (353)
T COG4257 123 GLAIGRLDPKTLEVTRFP-LPLEHADANLETAVFDPWGNLWFTGQIGA---YGRLDPARNVISVFPAP-QGGGPYGICAT 197 (353)
T ss_pred cceeEEecCcccceEEee-cccccCCCcccceeeCCCccEEEeecccc---ceecCcccCceeeeccC-CCCCCcceEEC
Confidence 347778888766555443 33322211111223333466666653211 12567877766554443 22222333 34
Q ss_pred eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCC-CcCceEE--EECCEEEEEecccCCCccCceEEEEeCCCC
Q 016421 185 LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSP-RRLCSGF--FMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 185 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
-++.+|+..-. -+-+-..|+.+..=+.++. |.+ ......+ --.|++.+. + -....+++|||++.
T Consensus 198 pdGsvwyasla------gnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wit---t---wg~g~l~rfdPs~~ 264 (353)
T COG4257 198 PDGSVWYASLA------GNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWIT---T---WGTGSLHRFDPSVT 264 (353)
T ss_pred CCCcEEEEecc------ccceEEcccccCCcceecC-CCcccccccccccCccCcEEEe---c---cCCceeeEeCcccc
Confidence 47888887321 2346667887775444432 322 1111111 234566665 1 12345788999999
Q ss_pred ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016421 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 262 ~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
+|.+-+- |... .+....-+--.|++++-.-..+.+.+||+++.+.+.+.
T Consensus 265 sW~eypL-Pgs~---arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 265 SWIEYPL-PGSK---ARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cceeeeC-CCCC---CCcceeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 9987542 2211 12222334456788887777889999999999988864
No 73
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.24 E-value=0.46 Score=41.69 Aligned_cols=193 Identities=14% Similarity=0.082 Sum_probs=102.6
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEE-eCCEEEEEcccccCCeEEEEECCCCcEeecCCCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLA-VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN 174 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~ 174 (390)
+..||... ....++.+|+.+..-..+. .+.+. ...+. .++.+|+... ....++|+.+++++.+...+
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~~~------G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVID-LPGPN------GMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEE-SSSEE------EEEEECTTSEEEEEET----TCEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEe-cCCCc------eEEEEccCCEEEEEEc----CceEEEecCCCcEEEEeecc
Confidence 34455553 4677889999887654322 22211 11222 3677777653 34566799999987775542
Q ss_pred C---CCcce--eeeeeCCEEEEEeccCCCCCcc--ceEEEEECCCCcEEEcC-CCCCCCcCceEEEE-CC-EEEEEeccc
Q 016421 175 H---PRCLF--GSGSLGSIAIIAGGSDKNGHVL--KSAELYDSTTGRWEMLP-SMHSPRRLCSGFFM-DG-KFYVIGGMS 244 (390)
Q Consensus 175 ~---~r~~~--~~~~~~~~lyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~-~~-~iyv~GG~~ 244 (390)
. +.... .++.-++.+|+---........ ..++++++. ++.+.+. .+..+ .+.+.. ++ .+|+.-.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds-- 153 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADS-- 153 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEET--
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeeccc--
Confidence 1 22222 3333467888864322111112 568999998 6655442 22222 223332 44 5777522
Q ss_pred CCCccCceEEEEeCCCCc--eEE---ccCCCCCCCCcCCCCCEEEE-ECCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016421 245 SPTVSLTCGEEFDLETRK--WRK---IEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 245 ~~~~~~~~v~~yd~~~~~--W~~---~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
....+++||+.... +.. +..++.... ..-.+++ .+|.||+..-..+.|.+||++...-..+.
T Consensus 154 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g----~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 154 ----FNGRIWRFDLDADGGELSNRRVFIDFPGGPG----YPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp ----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSC----EEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE
T ss_pred ----ccceeEEEeccccccceeeeeeEEEcCCCCc----CCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEc
Confidence 24568888886433 432 222222110 0112333 46899998777789999999966555554
No 74
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=96.21 E-value=0.13 Score=40.16 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=54.7
Q ss_pred EEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC------CeEEEE-
Q 016421 231 FFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT------NMVKKY- 303 (390)
Q Consensus 231 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~------~~v~~y- 303 (390)
+.+||-+|.+.... ......+.+||..+++|+.+..+... ........++.++|+|.++.... -++|+.
T Consensus 2 icinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~--~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 2 ICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDP--YSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred EEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeee--ccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence 56899999987662 22356789999999999987653111 11234457889999999986421 245555
Q ss_pred eCCCCceEEcc
Q 016421 304 DKLKNTWDVLG 314 (390)
Q Consensus 304 d~~~~~W~~v~ 314 (390)
|.+..+|.+..
T Consensus 78 D~~k~~Wsk~~ 88 (129)
T PF08268_consen 78 DYEKQEWSKKH 88 (129)
T ss_pred ccccceEEEEE
Confidence 56678999864
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.12 E-value=1.4 Score=42.53 Aligned_cols=147 Identities=11% Similarity=-0.018 Sum_probs=80.8
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++++|..+++-+.+...+..........-+..|++....++ ..+++++|..+++.+.+..-...- ......-
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wSp 315 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAID-TEPSWHP 315 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCc-cceEECC
Confidence 35789999988877666554322222222222445655543322 357899999999888775422111 1111223
Q ss_pred CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEec--CCCeEEEEeCCCCc
Q 016421 234 DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEY--LTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg--~~~~v~~yd~~~~~ 309 (390)
+| .|++.....+ ...++.+|+.++++..+..... .. ..+ ...-+| .|++.+. ....++.+|+.+++
T Consensus 316 DG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~-~~----~~~-~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 316 DGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE-QN----LGG-SITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC-CC----cCe-eECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 45 4554432221 2468899999999887742111 00 111 223344 4544432 23478889999988
Q ss_pred eEEccC
Q 016421 310 WDVLGR 315 (390)
Q Consensus 310 W~~v~~ 315 (390)
...+..
T Consensus 386 ~~~lt~ 391 (448)
T PRK04792 386 MQVLTS 391 (448)
T ss_pred eEEccC
Confidence 877653
No 76
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.12 E-value=0.2 Score=43.92 Aligned_cols=159 Identities=14% Similarity=0.032 Sum_probs=95.8
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
.++.+|.--|....+.+..+|+.|++-....++|..-..=+++.++++||.+== .....++||+.+ .+.+..
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~t--l~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNT--LKKIGT 125 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTT--TEEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEcccc--ceEEEE
Confidence 467888887777677899999999987766677766666699999999999832 245689999875 445544
Q ss_pred CCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcC-CCCCEEEEECCEEEEEecCCCe
Q 016421 221 MHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAA-QAPPLVAVVDNQLYAVEYLTNM 299 (390)
Q Consensus 221 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~g~l~v~gg~~~~ 299 (390)
.+.+..+-+.+.-+..+++--| .+.++..||.+-+=.. .+.......+ ..---+-.++|.||.==-..+.
T Consensus 126 ~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~--~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~ 196 (264)
T PF05096_consen 126 FPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVR--TIQVTDNGRPVSNLNELEYINGKIYANVWQTDR 196 (264)
T ss_dssp EE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEE--EEE-EETTEE---EEEEEEETTEEEEEETTSSE
T ss_pred EecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEE--EEEEEECCEECCCcEeEEEEcCEEEEEeCCCCe
Confidence 4555556666655556666533 4567788988643221 1111000000 0011244567777766556789
Q ss_pred EEEEeCCCCc---eEEccCC
Q 016421 300 VKKYDKLKNT---WDVLGRL 316 (390)
Q Consensus 300 v~~yd~~~~~---W~~v~~~ 316 (390)
|.+-||++++ |-.+..+
T Consensus 197 I~~Idp~tG~V~~~iDls~L 216 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGL 216 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHH
T ss_pred EEEEeCCCCeEEEEEEhhHh
Confidence 9999999986 5554443
No 77
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.00 E-value=0.14 Score=45.72 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=67.2
Q ss_pred cCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC-----CCCCc
Q 016421 153 FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM-----HSPRR 226 (390)
Q Consensus 153 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~ 226 (390)
.+..+-.||+.+.+|..+..-... .-..+... +++||+.|-...++.....+..||..+.+|..++.. |.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 356788999999999887553111 11123333 788888886654432466789999999999887652 33321
Q ss_pred CceEEEEC-CEEEEEecccCCCccCceEEEEeCCCCceEEccC
Q 016421 227 LCSGFFMD-GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG 268 (390)
Q Consensus 227 ~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 268 (390)
.......+ ..+++.|.... ....+..|| ..+|+.+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~---g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSAN---GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceecC---CCceEEEEc--CCceEeccc
Confidence 11111123 36777665422 234566674 557998866
No 78
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=0.28 Score=45.60 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=80.8
Q ss_pred EeCCE-EEEEcccccCCeEEEEECCCCcEeecCCCCC--CCcc-eeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 140 AVGSE-LLVFGRELFDFAIWKYSLVFRSWMKCEGMNH--PRCL-FGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 140 ~~~~~-iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~--~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
..++. ..+++|. ..-++.||..+.+-..+.++-. .+.. .--+..++.++++-|..+ .+......|+.|
T Consensus 266 ~p~G~~~i~~s~r--rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~el 337 (514)
T KOG2055|consen 266 APNGHSVIFTSGR--RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKEL 337 (514)
T ss_pred cCCCceEEEeccc--ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhh
Confidence 33444 5555552 3467899999998888766421 1111 122334555666666543 367777888888
Q ss_pred EEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCE-EEEECCEEEEE
Q 016421 216 EMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPL-VAVVDNQLYAV 293 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~g~l~v~ 293 (390)
..--.++........ .-++ .|++.||.. .|+++|+..+.-.. ......+ -++.. +...++.++..
T Consensus 338 i~s~KieG~v~~~~f-sSdsk~l~~~~~~G-------eV~v~nl~~~~~~~--rf~D~G~---v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 338 ITSFKIEGVVSDFTF-SSDSKELLASGGTG-------EVYVWNLRQNSCLH--RFVDDGS---VHGTSLCISLNGSYLAT 404 (514)
T ss_pred hheeeeccEEeeEEE-ecCCcEEEEEcCCc-------eEEEEecCCcceEE--EEeecCc---cceeeeeecCCCceEEe
Confidence 543233322222211 2344 566666542 58899998874221 1111111 11112 23467888888
Q ss_pred ecCCCeEEEEeCCC
Q 016421 294 EYLTNMVKKYDKLK 307 (390)
Q Consensus 294 gg~~~~v~~yd~~~ 307 (390)
|...+-|-+||.++
T Consensus 405 GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNS 418 (514)
T ss_pred ccCcceEEEeccch
Confidence 87788888998654
No 79
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.73 E-value=2 Score=41.17 Aligned_cols=193 Identities=11% Similarity=-0.034 Sum_probs=97.6
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
+.|+...-......++++|..+++-+.+...+..........-+.+|++.....+ ..+++++|..++..+.+..-+
T Consensus 211 ~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~ 286 (430)
T PRK00178 211 KRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHP 286 (430)
T ss_pred CEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCC
Confidence 3444333222335789999998887776544321111111112345554432222 257899999999988765422
Q ss_pred CCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC-CEEEEEec--CCC
Q 016421 223 SPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD-NQLYAVEY--LTN 298 (390)
Q Consensus 223 ~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-g~l~v~gg--~~~ 298 (390)
..-... ...-+| +|++.....+ ...++.+|+.++++.++..... .... ....-+ +.|++... ...
T Consensus 287 ~~~~~~-~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~~-----~~~~-~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 287 AIDTEP-FWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVGN-----YNAR-PRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred CCcCCe-EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCC-----Cccc-eEECCCCCEEEEEEccCCce
Confidence 111111 112244 5655532221 2468889999988877643211 0011 122223 44544432 224
Q ss_pred eEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 299 MVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 299 ~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++.+|..+++.+.+....... .. ...-+|+.+++....+. ...++..+.+.
T Consensus 356 ~l~~~dl~tg~~~~lt~~~~~~------~p-~~spdg~~i~~~~~~~g---~~~l~~~~~~g 407 (430)
T PRK00178 356 HVAAQDLQRGSVRILTDTSLDE------SP-SVAPNGTMLIYATRQQG---RGVLMLVSING 407 (430)
T ss_pred EEEEEECCCCCEEEccCCCCCC------Cc-eECCCCCEEEEEEecCC---ceEEEEEECCC
Confidence 6899999999888776432111 11 12335555555443221 12466666644
No 80
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.60 E-value=2.5 Score=41.36 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=64.4
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCC-----cceeeeeeC-CEEEEEeccCCCCCccceEEEEEC
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPR-----CLFGSGSLG-SIAIIAGGSDKNGHVLKSAELYDS 210 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r-----~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~ 210 (390)
+..++.+|+.... ..++.+|..+++ |+.-...+... .....+..+ ++||+... ...+..+|.
T Consensus 58 vv~~g~vy~~~~~---g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~ 127 (488)
T cd00216 58 LVVDGDMYFTTSH---SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDA 127 (488)
T ss_pred EEECCEEEEeCCC---CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEEC
Confidence 5668888886542 578889988764 86533222001 111233445 78887432 245889999
Q ss_pred CCCc--EEEcCCCCC-CC--cCceEEEECCEEEEEecccCCC---ccCceEEEEeCCCCc--eEE
Q 016421 211 TTGR--WEMLPSMHS-PR--RLCSGFFMDGKFYVIGGMSSPT---VSLTCGEEFDLETRK--WRK 265 (390)
Q Consensus 211 ~t~~--W~~~~~~~~-~r--~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~--W~~ 265 (390)
.|++ |+.-..... .. ...+.++.++.+|+ |...... .....++.+|..|.+ |+.
T Consensus 128 ~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 128 ETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 9885 876432221 10 12233456777665 3221110 123568899998764 864
No 81
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=95.43 E-value=1.6 Score=37.89 Aligned_cols=200 Identities=15% Similarity=0.146 Sum_probs=89.8
Q ss_pred eEEEeCCEEEEEcc--cccCC---eEEEEE---CCCCcEee--cCCCCC-------CCcceeeeeeCCEEEEEeccCCCC
Q 016421 137 ESLAVGSELLVFGR--ELFDF---AIWKYS---LVFRSWMK--CEGMNH-------PRCLFGSGSLGSIAIIAGGSDKNG 199 (390)
Q Consensus 137 ~~~~~~~~iy~~Gg--~~~~~---~~~~yd---~~t~~W~~--~~~~~~-------~r~~~~~~~~~~~lyv~GG~~~~~ 199 (390)
+.-.+++++|..=- ....+ ..+.|+ ...+.|+. ++..+. .-..|+.+.+++.-|.+|-.+++.
T Consensus 79 SMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~ 158 (367)
T PF12217_consen 79 SMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDV 158 (367)
T ss_dssp -EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SS
T ss_pred eeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCC
Confidence 44567888886532 11221 234454 34667854 344443 234467778888888888666554
Q ss_pred CccceEE-EEECCCCcE--------EEcCCCCCCCc--CceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccC
Q 016421 200 HVLKSAE-LYDSTTGRW--------EMLPSMHSPRR--LCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG 268 (390)
Q Consensus 200 ~~~~~~~-~yd~~t~~W--------~~~~~~~~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 268 (390)
. ..++- .|-+ +.| +.++.- ..+. .+..-.++|++|+..-...+...-+.+.+-+.....|..+..
T Consensus 159 s-PRe~G~~yfs--~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf 234 (367)
T PF12217_consen 159 S-PRELGFLYFS--DAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF 234 (367)
T ss_dssp S-S-EEEEEEET--TTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-
T ss_pred C-cceeeEEEec--ccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc
Confidence 3 23332 3322 222 222221 1111 122335799999997544444445667777888889998754
Q ss_pred CCCCCCCcCCCCCEEEEECCEEEEEec-------------------CCCeEE------EEeCCCCceEEccC-CCccccC
Q 016421 269 MYPNVNRAAQAPPLVAVVDNQLYAVEY-------------------LTNMVK------KYDKLKNTWDVLGR-LPVRADL 322 (390)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~l~v~gg-------------------~~~~v~------~yd~~~~~W~~v~~-~~~~~~~ 322 (390)
... . .......+.+++.||++|. +....+ -|.++.-+|..|.+ .-.+...
T Consensus 235 p~n-v---HhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~iv 310 (367)
T PF12217_consen 235 PNN-V---HHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIV 310 (367)
T ss_dssp TT-------SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS
T ss_pred ccc-c---cccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccc
Confidence 322 1 1233446789999999973 011111 13556667877753 2222222
Q ss_pred CCcceeEEE-EeCCEE-EEEcCCC
Q 016421 323 SNGWGLAFK-ACGNEL-LVVGGQR 344 (390)
Q Consensus 323 ~~~~~~~~~-~~~~~l-yv~GG~~ 344 (390)
.+..|.+.+ +-+|.| |+|||.+
T Consensus 311 NSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 311 NSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp ---SEEEEEEEETTEEEEEEEEB-
T ss_pred cccccceeEEEECCEEEEEecCcc
Confidence 334454444 447766 6778755
No 82
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.23 E-value=3.1 Score=40.05 Aligned_cols=146 Identities=8% Similarity=-0.104 Sum_probs=77.8
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++++|+.+++.+.+...+..........-+.+|++....++ ..+++++|..++.-+.+..-+..-. .....-
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~sp 299 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSP 299 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCccC-ceeEcC
Confidence 46899999999888777654432222222222345554433222 3568999999988777654332111 111223
Q ss_pred CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEec--CCCeEEEEeCCCCc
Q 016421 234 DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEY--LTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg--~~~~v~~yd~~~~~ 309 (390)
+|+ |++.....+ ...++.+|..+...+.+...... .......-+| .|++... ....++.+|+.++.
T Consensus 300 DG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~~~------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 300 DGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGGGR------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred CCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCCCc------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 454 444332211 24688899888777766532110 1111222344 4444432 22478889987776
Q ss_pred eEEcc
Q 016421 310 WDVLG 314 (390)
Q Consensus 310 W~~v~ 314 (390)
...+.
T Consensus 370 ~~~lt 374 (435)
T PRK05137 370 ERILT 374 (435)
T ss_pred eEecc
Confidence 66554
No 83
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.20 E-value=0.59 Score=43.57 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=93.2
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE--EECCE-EEEEecccCCCccCceEEEEeCCCCc
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF--FMDGK-FYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
.-.+.+.+|.++. -.++..|-++|. .+.++...+.....+ .-+|. ..+++|+ ..-++.||+.+.+
T Consensus 224 ~~plllvaG~d~~----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~ysyDle~ak 291 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCc----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------ceEEEEeeccccc
Confidence 3467777887653 346666666665 444444433322222 22555 6666664 3457889999999
Q ss_pred eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcC
Q 016421 263 WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 263 W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 342 (390)
-+++.++.......- .-.-+..++.++++-|..+.|......|++|..--.++.... +......+.+|+++||
T Consensus 292 ~~k~~~~~g~e~~~~--e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-----~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSM--ERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-----DFTFSSDSKELLASGG 364 (514)
T ss_pred cccccCCCCcccchh--heeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-----eEEEecCCcEEEEEcC
Confidence 988876654221111 112345666777777888889888888888854222222211 1233334556788877
Q ss_pred CCCCCCCeEEEeeecCCCCCCCCCCceEEec
Q 016421 343 QRGPEGENVVLNSWCPKSGVNNGTLDWKVLA 373 (390)
Q Consensus 343 ~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~ 373 (390)
.. +|++||..++ -+..+|..-+
T Consensus 365 ~G-------eV~v~nl~~~--~~~~rf~D~G 386 (514)
T KOG2055|consen 365 TG-------EVYVWNLRQN--SCLHRFVDDG 386 (514)
T ss_pred Cc-------eEEEEecCCc--ceEEEEeecC
Confidence 54 6999999873 3334465443
No 84
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.19 E-value=0.012 Score=51.92 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHhhhccc-----cchhhhHhhcHHHHHHhhcCCchhh
Q 016421 46 LLPGLVDDVALNCLAFACT-----SDYASLLFINKRFHKLIKSGYLYGL 89 (390)
Q Consensus 46 ~~~~LP~dl~~~iL~rlp~-----~~l~~~~~V~k~w~~l~~s~~~~~~ 89 (390)
.+.-||||++.+||.++=. .+|.++.+|||.|.-...+|++++.
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 3567999999999998654 7999999999999999999998764
No 85
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.16 E-value=3.2 Score=39.89 Aligned_cols=182 Identities=12% Similarity=0.003 Sum_probs=93.0
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++++|..+++-..+...+..........-+.+|++....++ ..+++++|+.++.-+.+..-...... ....-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~~~~-~~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGIDTE-PTWAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCCccc-eEECC
Confidence 35789999988877766554332211111122445655433222 25799999999887766432211111 11223
Q ss_pred CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEecC--CCeEEEEeCCCCc
Q 016421 234 DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEYL--TNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg~--~~~v~~yd~~~~~ 309 (390)
+|+ |++.....+ ...++.+|..+++...+..... .... ....-+| .|++.... ...++.||..+++
T Consensus 302 DG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g~-----~~~~-~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 302 DGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQGN-----YNAR-ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEEeecCCC-----CccC-EEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 554 444432221 2468889998888877642211 0011 1222344 45554332 2368999999988
Q ss_pred eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 310 WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 310 W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
...+..-.... .... .-+|+.+++....+ ....++.++.+.
T Consensus 372 ~~~Lt~~~~~~------~p~~-spdG~~i~~~s~~~---g~~~L~~~~~~g 412 (433)
T PRK04922 372 VRTLTPGSLDE------SPSF-APNGSMVLYATREG---GRGVLAAVSTDG 412 (433)
T ss_pred eEECCCCCCCC------CceE-CCCCCEEEEEEecC---CceEEEEEECCC
Confidence 88765432111 1222 33555444443321 123577777754
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.14 E-value=2.8 Score=38.98 Aligned_cols=224 Identities=13% Similarity=0.048 Sum_probs=108.6
Q ss_pred EEEecCCCceeeCCCCCCCcccCCCCeeEEE--eCCEEEEEcccc-cCCeEEEE--ECCCCcEeecCCCCCCCcceeeee
Q 016421 110 EAFDPMKKKWMALPKIPCDECFNHADKESLA--VGSELLVFGREL-FDFAIWKY--SLVFRSWMKCEGMNHPRCLFGSGS 184 (390)
Q Consensus 110 ~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~iy~~Gg~~-~~~~~~~y--d~~t~~W~~~~~~~~~r~~~~~~~ 184 (390)
+.||..+.++..+.......... .+.. .++.||+..... ....+..| +..+++.+.+...+......+...
T Consensus 18 ~~~d~~~g~l~~~~~~~~~~~Ps----~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~ 93 (345)
T PF10282_consen 18 FRFDEETGTLTLVQTVAEGENPS----WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIA 93 (345)
T ss_dssp EEEETTTTEEEEEEEEEESSSEC----CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEE
T ss_pred EEEcCCCCCceEeeeecCCCCCc----eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEE
Confidence 46777888887655322111110 0122 357788876543 34455555 555467766655442222222233
Q ss_pred e---CCEEEEEeccCCCCCccceEEEEECCCC-cEEEc---------CCCC---CCCcCceEEEE-C-CEEEEEecccCC
Q 016421 185 L---GSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEML---------PSMH---SPRRLCSGFFM-D-GKFYVIGGMSSP 246 (390)
Q Consensus 185 ~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~---------~~~~---~~r~~~~~~~~-~-~~iyv~GG~~~~ 246 (390)
+ +..+|+.--. ...+.+|+...+ .-... .+-+ ..-..|.+... + ..+|+.- .
T Consensus 94 ~~~~g~~l~vany~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-l--- 163 (345)
T PF10282_consen 94 VDPDGRFLYVANYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-L--- 163 (345)
T ss_dssp ECTTSSEEEEEETT------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-T---
T ss_pred EecCCCEEEEEEcc------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-c---
Confidence 3 4566665321 234677777653 22211 1111 11223444444 3 3566652 1
Q ss_pred CccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCC--CCceEEcc---CCC
Q 016421 247 TVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKL--KNTWDVLG---RLP 317 (390)
Q Consensus 247 ~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~--~~~W~~v~---~~~ 317 (390)
....|..|+...+. .........+...++| .++.. +..+|++....+.|.+|+.. +..++.+. .+|
T Consensus 164 --G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR---h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 164 --GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR---HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp --TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE---EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred --CCCEEEEEEEeCCCceEEEeeccccccCCCCc---EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 24567777776655 6553332222111122 24443 34799999888888888766 66666654 343
Q ss_pred ccccCCCcceeEEEEe--CCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 318 VRADLSNGWGLAFKAC--GNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 318 ~~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
....... ....+... +..||+..... ..|.+|+.+
T Consensus 239 ~~~~~~~-~~~~i~ispdg~~lyvsnr~~------~sI~vf~~d 275 (345)
T PF10282_consen 239 EGFTGEN-APAEIAISPDGRFLYVSNRGS------NSISVFDLD 275 (345)
T ss_dssp TTSCSSS-SEEEEEE-TTSSEEEEEECTT------TEEEEEEEC
T ss_pred ccccccC-CceeEEEecCCCEEEEEeccC------CEEEEEEEe
Confidence 3222111 22333333 55788876432 246667663
No 87
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.05 E-value=4 Score=40.36 Aligned_cols=115 Identities=14% Similarity=0.112 Sum_probs=66.6
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCC--------cceeeeeeCCEEEEEeccCCCCCccceEEEE
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPR--------CLFGSGSLGSIAIIAGGSDKNGHVLKSAELY 208 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y 208 (390)
+..++.||+... ...++.+|..|++ |+.-...+... ...+.+..+++||+... ...+..+
T Consensus 66 vv~~g~vyv~s~---~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~AL 135 (527)
T TIGR03075 66 LVVDGVMYVTTS---YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVAL 135 (527)
T ss_pred EEECCEEEEECC---CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEE
Confidence 456888888654 2368888988764 76543322111 11234556788887421 2358999
Q ss_pred ECCCCc--EEEcC-CCCCC-CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eE
Q 016421 209 DSTTGR--WEMLP-SMHSP-RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WR 264 (390)
Q Consensus 209 d~~t~~--W~~~~-~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~ 264 (390)
|..|++ |+.-. +.... ....+-++.+++||+-...... .....+..||..|++ |+
T Consensus 136 Da~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 136 DAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred ECCCCCEEeecccccccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEe
Confidence 999886 86532 22111 1122345678888775322111 124568889998875 76
No 88
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.02 E-value=0.87 Score=37.23 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=48.7
Q ss_pred EEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEE-EEECCEEEEEec--CC--CeEEEEe-
Q 016421 231 FFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLV-AVVDNQLYAVEY--LT--NMVKKYD- 304 (390)
Q Consensus 231 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~g~l~v~gg--~~--~~v~~yd- 304 (390)
+.++|.+|+++....... ...+..||+.++++.+..++|..... ......+ ++.+++|.++-. .. -.||+-+
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~-~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDD-DDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKK 79 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCc-cCCEEEEEEecCCEEEEEEeccCCccEEEEEEee
Confidence 678999999987654321 22688999999999443344442220 1112223 334778888842 22 3455443
Q ss_pred --CCCCceEEccC
Q 016421 305 --KLKNTWDVLGR 315 (390)
Q Consensus 305 --~~~~~W~~v~~ 315 (390)
....+|+++-.
T Consensus 80 ~~~~~~SWtK~~~ 92 (164)
T PF07734_consen 80 YGYGKESWTKLFT 92 (164)
T ss_pred eccCcceEEEEEE
Confidence 23678999643
No 89
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.99 E-value=3.4 Score=39.31 Aligned_cols=146 Identities=12% Similarity=-0.075 Sum_probs=78.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEEC
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMD 234 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 234 (390)
..++++|..+++...+..............-+..+++.....+ ...++.+|..++..+.+.......... ...-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCCE-EECCC
Confidence 4788899988876655443322222111112345655543222 246899999988877765432211111 11224
Q ss_pred C-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC---CCeEEEEeCCCCce
Q 016421 235 G-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL---TNMVKKYDKLKNTW 310 (390)
Q Consensus 235 ~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~---~~~v~~yd~~~~~W 310 (390)
| +|++.....+ ...++.+|..+..+..+...... .......-+|+.+++... ...++.+|..++.+
T Consensus 289 g~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~~------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 289 GKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGGY------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCC------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 5 4554433221 23688899998888766532210 011123345555555432 24789999998777
Q ss_pred EEccC
Q 016421 311 DVLGR 315 (390)
Q Consensus 311 ~~v~~ 315 (390)
..+..
T Consensus 359 ~~l~~ 363 (417)
T TIGR02800 359 RVLTD 363 (417)
T ss_pred EEccC
Confidence 76653
No 90
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.85 E-value=0.99 Score=41.12 Aligned_cols=224 Identities=15% Similarity=0.138 Sum_probs=95.9
Q ss_pred eeEEEecCCCce--e-eCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCC-------C-C
Q 016421 108 GWEAFDPMKKKW--M-ALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMN-------H-P 176 (390)
Q Consensus 108 ~~~~~d~~~~~W--~-~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~-------~-~ 176 (390)
-+..||+.+-+- + .+|+-|.......-....+..+++...+--..+...+-+-|...++--..-+.| . +
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~ 147 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN 147 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET
T ss_pred EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC
Confidence 356789887643 2 334322211111112233444554444434455677888888887763321111 1 1
Q ss_pred CcceeeeeeCCEEEEE-eccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEE
Q 016421 177 RCLFGSGSLGSIAIIA-GGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEE 255 (390)
Q Consensus 177 r~~~~~~~~~~~lyv~-GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 255 (390)
+. |.+..-+|.+..+ -+..+.. ......+|++..+-.-.-+.........--+.++|+||-+-=.... ......
T Consensus 148 ~~-F~~lC~DGsl~~v~Ld~~Gk~-~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~---~~~~~~ 222 (342)
T PF06433_consen 148 RG-FSMLCGDGSLLTVTLDADGKE-AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS---AKFGKP 222 (342)
T ss_dssp TE-EEEEETTSCEEEEEETSTSSE-EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS---EEEEEE
T ss_pred Cc-eEEEecCCceEEEEECCCCCE-eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc---ccccCc
Confidence 22 2222223333333 2222221 2333457777665432222111111111224568888875311111 111112
Q ss_pred EeCCC-----CceEEccCCCCCCCCcCCCCCEEEEE--CCEEEEEe---c------CCCeEEEEeCCCCceEEccCCCcc
Q 016421 256 FDLET-----RKWRKIEGMYPNVNRAAQAPPLVAVV--DNQLYAVE---Y------LTNMVKKYDKLKNTWDVLGRLPVR 319 (390)
Q Consensus 256 yd~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~g---g------~~~~v~~yd~~~~~W~~v~~~~~~ 319 (390)
+.+.+ ..|+. + ....++.. .++||++- + ....||+||+.+.+ ++..++..
T Consensus 223 ~~~~t~~e~~~~WrP-----------G-G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k--rv~Ri~l~ 288 (342)
T PF06433_consen 223 WSLLTDAEKADGWRP-----------G-GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK--RVARIPLE 288 (342)
T ss_dssp EESS-HHHHHTTEEE-------------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE--EEEEEEEE
T ss_pred ccccCccccccCcCC-----------c-ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe--EEEEEeCC
Confidence 22222 34542 1 11123433 57999983 1 23589999999986 33322221
Q ss_pred ccCCCcceeEEEEeCC--EEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 320 ADLSNGWGLAFKACGN--ELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 320 ~~~~~~~~~~~~~~~~--~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
... .+.++ .-++ .||.+.+.++ .+.+||..+
T Consensus 289 ~~~---~Si~V-sqd~~P~L~~~~~~~~------~l~v~D~~t 321 (342)
T PF06433_consen 289 HPI---DSIAV-SQDDKPLLYALSAGDG------TLDVYDAAT 321 (342)
T ss_dssp EEE---SEEEE-ESSSS-EEEEEETTTT------EEEEEETTT
T ss_pred Ccc---ceEEE-ccCCCcEEEEEcCCCC------eEEEEeCcC
Confidence 110 11222 2233 4676644332 688999988
No 91
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.81 E-value=2.8 Score=37.37 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=67.8
Q ss_pred EEEEcccccCCeEEEEECCCCcEeecCCC-CCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE-cCCCC
Q 016421 145 LLVFGRELFDFAIWKYSLVFRSWMKCEGM-NHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM-LPSMH 222 (390)
Q Consensus 145 iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~ 222 (390)
+|+.++. ...+.+||+.+++-...-.. ..++. .....-+..+|+.++. ...+.+||..+++... ++...
T Consensus 3 ~~~s~~~--d~~v~~~d~~t~~~~~~~~~~~~~~~-l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 3 AYVSNEK--DNTISVIDTATLEVTRTFPVGQRPRG-ITLSKDGKLLYVCASD------SDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred EEEEecC--CCEEEEEECCCCceEEEEECCCCCCc-eEECCCCCEEEEEECC------CCeEEEEECCCCcEEEeccCCC
Confidence 4544442 35788889887754222111 11221 1111113457777653 2458889998887644 22111
Q ss_pred CCCcCceEEE-ECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC-Ce
Q 016421 223 SPRRLCSGFF-MDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT-NM 299 (390)
Q Consensus 223 ~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~-~~ 299 (390)
.+ ...+. -++ .+|+.++.+ ..+..||+.+.+- +..++.... . ......-+|.+++++... ..
T Consensus 74 ~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~~~--~--~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 74 DP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKV--LAEIPVGVE--P--EGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred Cc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeE--EeEeeCCCC--c--ceEEECCCCCEEEEEecCCCe
Confidence 11 12222 244 466654322 3578899987542 222211100 0 111223466666665433 45
Q ss_pred EEEEeCCCCc
Q 016421 300 VKKYDKLKNT 309 (390)
Q Consensus 300 v~~yd~~~~~ 309 (390)
+..||..+.+
T Consensus 139 ~~~~d~~~~~ 148 (300)
T TIGR03866 139 AHFIDTKTYE 148 (300)
T ss_pred EEEEeCCCCe
Confidence 6678877654
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.32 E-value=1 Score=42.23 Aligned_cols=259 Identities=14% Similarity=0.146 Sum_probs=123.5
Q ss_pred CCCCChHHHHHHHhhhccccchhhhHhhcH---HHHHHhhcCCchhhhhhcCccccEEEEEeC-CCeeEEEecCCCceee
Q 016421 46 LLPGLVDDVALNCLAFACTSDYASLLFINK---RFHKLIKSGYLYGLRKQLGIVEHWVYLVCD-PRGWEAFDPMKKKWMA 121 (390)
Q Consensus 46 ~~~~LP~dl~~~iL~rlp~~~l~~~~~V~k---~w~~l~~s~~~~~~r~~~~~~~~~l~~~~~-~~~~~~~d~~~~~W~~ 121 (390)
.-|.-|+|++.-+-+|+..-+. +-+.+.| +|+..+.+-.|. .+..|+..|+ ...+..||..+.. .
T Consensus 34 fsp~~P~d~aVt~S~rvqly~~-~~~~~~k~~srFk~~v~s~~fR--------~DG~LlaaGD~sG~V~vfD~k~r~--i 102 (487)
T KOG0310|consen 34 FSPKHPYDFAVTSSVRVQLYSS-VTRSVRKTFSRFKDVVYSVDFR--------SDGRLLAAGDESGHVKVFDMKSRV--I 102 (487)
T ss_pred cCCCCCCceEEecccEEEEEec-chhhhhhhHHhhccceeEEEee--------cCCeEEEccCCcCcEEEeccccHH--H
Confidence 4567888988888888775432 2334444 344445555443 3566777775 5677889944421 1
Q ss_pred CCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEe-ec-CCCCCCCcceeeeeeCCEEEEEeccCCCC
Q 016421 122 LPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWM-KC-EGMNHPRCLFGSGSLGSIAIIAGGSDKNG 199 (390)
Q Consensus 122 l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~-~~-~~~~~~r~~~~~~~~~~~lyv~GG~~~~~ 199 (390)
+-.+.....+- ........++.+++.|++.. .+-.+|..+..-. .+ ..--.-|+ .+....++.|++-||+++.
T Consensus 103 LR~~~ah~apv-~~~~f~~~d~t~l~s~sDd~--v~k~~d~s~a~v~~~l~~htDYVR~-g~~~~~~~hivvtGsYDg~- 177 (487)
T KOG0310|consen 103 LRQLYAHQAPV-HVTKFSPQDNTMLVSGSDDK--VVKYWDLSTAYVQAELSGHTDYVRC-GDISPANDHIVVTGSYDGK- 177 (487)
T ss_pred HHHHhhccCce-eEEEecccCCeEEEecCCCc--eEEEEEcCCcEEEEEecCCcceeEe-eccccCCCeEEEecCCCce-
Confidence 11111111110 00112235788888887542 2334444443311 11 11111222 1333457889999998864
Q ss_pred CccceEEEEECCCC-cEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcC
Q 016421 200 HVLKSAELYDSTTG-RWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAA 277 (390)
Q Consensus 200 ~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~ 277 (390)
+-.||..+. .|.. .+.....--....+ .|.+++..|- +.+-++|+.++.= .+..+.. +.
T Consensus 178 -----vrl~DtR~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~~G~q-ll~~~~~----H~ 238 (487)
T KOG0310|consen 178 -----VRLWDTRSLTSRVV--ELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLTTGGQ-LLTSMFN----HN 238 (487)
T ss_pred -----EEEEEeccCCceeE--EecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEecCCce-ehhhhhc----cc
Confidence 677888766 4432 11111101122223 3233333221 2355566654331 1111111 01
Q ss_pred CCCCEEEEE-CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCC
Q 016421 278 QAPPLVAVV-DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRG 345 (390)
Q Consensus 278 ~~~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 345 (390)
....++... ++.=.+-|+--+.|-+|| +..|..+..+..+..- ... .+.-++.-.++|..++
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~pv---Lsi-avs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGPV---LSI-AVSPDDQTVVIGMSNG 301 (487)
T ss_pred ceEEEEEeecCCceEeecccccceEEEE--ccceEEEEeeecccce---eeE-EecCCCceEEEecccc
Confidence 111122222 233334445557788998 6677777655433211 112 2234677777776553
No 93
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.21 E-value=4.3 Score=36.98 Aligned_cols=178 Identities=15% Similarity=0.015 Sum_probs=92.3
Q ss_pred CeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCC----CCCCCcCce
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPS----MHSPRRLCS 229 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~----~~~~r~~~~ 229 (390)
+.+++||+.++.-+.... |.........--++.|++.. ..+..+++.++. |+.+.+ .+..|.+=.
T Consensus 47 ~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~~---------~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 47 GRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIACE---------HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred CeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEEc---------cccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 478888888665444322 22222222222244555542 224556665443 355432 233455555
Q ss_pred EEEECCEEEEEecc-----cCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC-EEEEEecCCCeEEEE
Q 016421 230 GFFMDGKFYVIGGM-----SSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN-QLYAVEYLTNMVKKY 303 (390)
Q Consensus 230 ~~~~~~~iyv~GG~-----~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g-~l~v~gg~~~~v~~y 303 (390)
.+.-+|.+|+-.-. .........+|+||+. ....++..-.. ...+..+..-++ .+|+.....+.+++|
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~-----~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDL-----TIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcE-----EecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 55667887775432 1112234579999994 55554432211 011112333445 799998888999999
Q ss_pred eCCC------C--ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 304 DKLK------N--TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 304 d~~~------~--~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
+... + .+.....-+..+. -.++.-+|.||+.....+ ..|.+|+|+
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PD------G~~vDadG~lw~~a~~~g-----~~v~~~~pd 243 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPD------GMAVDADGNLWVAAVWGG-----GRVVRFNPD 243 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCC------ceEEeCCCCEEEecccCC-----ceEEEECCC
Confidence 7753 1 1222222111122 134456889997555443 148899995
No 94
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.21 E-value=3.4 Score=35.83 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC-cceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR-CLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++..++.++. ...+.+||..+.+.... +.... ....+... ++.+++.++.+ ..+.+||..+..-...
T Consensus 62 ~~~~l~~~~~--~~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~- 130 (289)
T cd00200 62 DGTYLASGSS--DKTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGKCLTT- 130 (289)
T ss_pred CCCEEEEEcC--CCeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcEEEEE-
Confidence 3334455543 45788899877532111 11111 11122222 34566665522 3488899885543221
Q ss_pred CCCCCCcCce-EEEEC-CEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE-ECCEEEEEecC
Q 016421 220 SMHSPRRLCS-GFFMD-GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV-VDNQLYAVEYL 296 (390)
Q Consensus 220 ~~~~~r~~~~-~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~ 296 (390)
+........ ..... +.+++.++.+ ..+..||+.+.+-.. .+... ......+.. -+++.+++++.
T Consensus 131 -~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~--~~~~~----~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 131 -LRGHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVA--TLTGH----TGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred -eccCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccce--eEecC----ccccceEEECCCcCEEEEecC
Confidence 111111122 22233 4444444322 246778887543211 11110 001112332 34445666666
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeC-CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACG-NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+.+||..+.+-.. .+..... .-.++.... +.+++.++.++ .+.+||..+
T Consensus 198 ~~~i~i~d~~~~~~~~--~~~~~~~----~i~~~~~~~~~~~~~~~~~~~------~i~i~~~~~ 250 (289)
T cd00200 198 DGTIKLWDLSTGKCLG--TLRGHEN----GVNSVAFSPDGYLLASGSEDG------TIRVWDLRT 250 (289)
T ss_pred CCcEEEEECCCCceec--chhhcCC----ceEEEEEcCCCcEEEEEcCCC------cEEEEEcCC
Confidence 7889999987644332 2211110 112233333 55666655332 477888765
No 95
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.16 E-value=4.6 Score=37.11 Aligned_cols=257 Identities=10% Similarity=0.036 Sum_probs=115.2
Q ss_pred ccEEEEEeC-CCeeEEEecC-CCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCCc-E-eecC
Q 016421 97 EHWVYLVCD-PRGWEAFDPM-KKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFRS-W-MKCE 171 (390)
Q Consensus 97 ~~~l~~~~~-~~~~~~~d~~-~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~~-W-~~~~ 171 (390)
...||+... ...+..|+.. ..++..+...+..... + ...+.. ++.+|+.+. ..+.+.+|+..++. . ..+.
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p--~-~i~~~~~g~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~ 120 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP--T-HISTDHQGRFLFSASY--NANCVSVSPLDKDGIPVAPIQ 120 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc--e-EEEECCCCCEEEEEEc--CCCeEEEEEECCCCCCCCcee
Confidence 455666542 4555566665 3445444333221111 0 112222 345666542 24577778775421 1 1122
Q ss_pred CCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCC-cEEEcC----CCCCCCcCceEEEE-C-CEEEEEec
Q 016421 172 GMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEMLP----SMHSPRRLCSGFFM-D-GKFYVIGG 242 (390)
Q Consensus 172 ~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~----~~~~~r~~~~~~~~-~-~~iyv~GG 242 (390)
..+.....|.++.. +..+|+..- ....+.+||..++ ...... ..+.......++.. + ..+|+...
T Consensus 121 ~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 121 IIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred eccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 22222223333332 346666542 1356899998763 222110 11112112223333 3 36777632
Q ss_pred ccCCCccCceEEEEeCC--CCceEEc---cCCCCCCCCcCCCCCEEE-EECC-EEEEEecCCCeEEEEeCCC--CceEEc
Q 016421 243 MSSPTVSLTCGEEFDLE--TRKWRKI---EGMYPNVNRAAQAPPLVA-VVDN-QLYAVEYLTNMVKKYDKLK--NTWDVL 313 (390)
Q Consensus 243 ~~~~~~~~~~v~~yd~~--~~~W~~~---~~~~~~~~~~~~~~~~~~-~~~g-~l~v~gg~~~~v~~yd~~~--~~W~~v 313 (390)
..+.+.+||.. +++.+.+ ..+|.... ..+....+. .-+| .+|+.....+.+.+|+.+. ..++.+
T Consensus 195 ------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 195 ------LNSSVDVWQLKDPHGEIECVQTLDMMPADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred ------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 13456666665 4555443 33332111 122221122 2244 5777655567888887643 456655
Q ss_pred cCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeee--cCCCCCCCCCCceEEecccCccCeEEeeeee
Q 016421 314 GRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSW--CPKSGVNNGTLDWKVLAEKQHVGVFVYNCAV 387 (390)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y--~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~ 387 (390)
...+.....+ +.++..-+..||+.+..++ .|.+| |.++ ..++.++..+ .+..+.++.+
T Consensus 268 ~~~~~~~~p~---~~~~~~dg~~l~va~~~~~------~v~v~~~~~~~------g~l~~~~~~~-~g~~P~~~~~ 327 (330)
T PRK11028 268 GHQPTETQPR---GFNIDHSGKYLIAAGQKSH------HISVYEIDGET------GLLTELGRYA-VGQGPMWVSV 327 (330)
T ss_pred EEEeccccCC---ceEECCCCCEEEEEEccCC------cEEEEEEcCCC------CcEEEccccc-cCCCceEEEE
Confidence 5444332111 1233233557777654221 34455 4444 4577776653 3555555544
No 96
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.16 E-value=6.5 Score=38.88 Aligned_cols=210 Identities=15% Similarity=0.121 Sum_probs=110.2
Q ss_pred cccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcc----cCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCc--E
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDEC----FNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRS--W 167 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~----~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W 167 (390)
.+..+|+......++++|..+. .|..-...+.... ...........++.||+... ...++.+|..|++ |
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---DARLVALDAKTGKVVW 144 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---CCEEEEEECCCCCEEe
Confidence 3678888766677899998865 5865433321110 00011223455778776442 3478999998875 7
Q ss_pred eecCC-CCCC-CcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEc--CCCCC------------------
Q 016421 168 MKCEG-MNHP-RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEML--PSMHS------------------ 223 (390)
Q Consensus 168 ~~~~~-~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~--~~~~~------------------ 223 (390)
+.-.. +... .....-++.+++||+-...... .....+..||.+|++ |+.- +.-+.
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ecccccccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 54321 1111 1112334567887775322111 123568899999886 8642 21100
Q ss_pred --CCcCc------eEEEE---CCEEEEEeccc----C-----CCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCC
Q 016421 224 --PRRLC------SGFFM---DGKFYVIGGMS----S-----PTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 224 --~r~~~------~~~~~---~~~iyv~GG~~----~-----~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ 281 (390)
....+ ....+ .+.||+--|.. . .+.+.+++...|++|++ |.--...........-..+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 00011 11234 34677765541 1 12346789999999885 7632211111111111222
Q ss_pred EEEE--ECCE---EEEEecCCCeEEEEeCCCCc
Q 016421 282 LVAV--VDNQ---LYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 282 ~~~~--~~g~---l~v~gg~~~~v~~yd~~~~~ 309 (390)
.++. .+|+ +++.+...+.++++|..+.+
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 3443 3554 67777777788888887754
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=93.51 E-value=5.2 Score=35.59 Aligned_cols=178 Identities=14% Similarity=-0.026 Sum_probs=83.1
Q ss_pred CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCcEee-cCCCCCCCcceeee
Q 016421 106 PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRSWMK-CEGMNHPRCLFGSG 183 (390)
Q Consensus 106 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~ 183 (390)
...+..+|+.+.+....-..... . ....+..+ ..+|+.++ ....+.+||..+.+... ++....+ ......
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~--~---~~l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~ 81 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR--P---RGITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLPSGPDP-ELFALH 81 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC--C---CceEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEeccCCCCc-cEEEEC
Confidence 45677788876653222111110 0 11122223 35666654 24578899998876643 2221111 111111
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCc
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
.-++.+|+.++. ...+.+||+.+.+-. ..++........+. -+|++++++..+. ..+..||..+.+
T Consensus 82 ~~g~~l~~~~~~------~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~ 148 (300)
T TIGR03866 82 PNGKILYIANED------DNLVTVIDIETRKVL--AEIPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYE 148 (300)
T ss_pred CCCCEEEEEcCC------CCeEEEEECCCCeEE--eEeeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCe
Confidence 123456666432 235888999876422 11121111122232 3677776654321 235557877654
Q ss_pred eEEccCCCCCCCCcCCCCCEEEEECCEEEEEe-cCCCeEEEEeCCCCce
Q 016421 263 WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE-YLTNMVKKYDKLKNTW 310 (390)
Q Consensus 263 W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~g-g~~~~v~~yd~~~~~W 310 (390)
-......... . .......+++.++++ ...+.+..||.++.+.
T Consensus 149 ~~~~~~~~~~----~--~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 149 IVDNVLVDQR----P--RFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EEEEEEcCCC----c--cEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 3221111110 1 111223355544444 3467899999987653
No 98
>smart00284 OLF Olfactomedin-like domains.
Probab=93.49 E-value=4.9 Score=35.27 Aligned_cols=181 Identities=11% Similarity=0.032 Sum_probs=95.2
Q ss_pred CCEEEEEcccc-cCCeEEEEEC----CCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016421 142 GSELLVFGREL-FDFAIWKYSL----VFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 142 ~~~iy~~Gg~~-~~~~~~~yd~----~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
.+++|+..+.. ....++.|.. ..+++.+.-.+|.+..+.+.++++|.+|..-.. ...+..||+.+++=.
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~ 107 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQ 107 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC------CccEEEEECCCCcEE
Confidence 35677765542 2345555532 234444434567777778899999999996432 456999999998754
Q ss_pred EcCCCCCC----Cc-----Cc---eEEEECCEEEEEecccCCCccCceEEEEeCCCC----ceEEccCCCCCCCCcCCCC
Q 016421 217 MLPSMHSP----RR-----LC---SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR----KWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 217 ~~~~~~~~----r~-----~~---~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~~ 280 (390)
....+|.+ +. ++ -.++=++-|+++=...... ..-.+-..|+.+- +|..- .+.. ..
T Consensus 108 ~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~-g~ivvSkLnp~tL~ve~tW~T~--~~k~------sa 178 (255)
T smart00284 108 KEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA-GKIVISKLNPATLTIENTWITT--YNKR------SA 178 (255)
T ss_pred EEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC-CCEEEEeeCcccceEEEEEEcC--CCcc------cc
Confidence 32223321 11 11 1223334455553222111 0112234666654 56552 2221 11
Q ss_pred CEEEEECCEEEEEec----CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe---CCEEEEEc
Q 016421 281 PLVAVVDNQLYAVEY----LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC---GNELLVVG 341 (390)
Q Consensus 281 ~~~~~~~g~l~v~gg----~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~---~~~lyv~G 341 (390)
..+..+=|.||++.. ...-.+.||..+++ ..-..+|...... .++++.+ +.+||+--
T Consensus 179 ~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~-~~~~~i~f~n~y~---~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 179 SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGK-EGHLDIPFENMYE---YISMLDYNPNDRKLYAWN 242 (255)
T ss_pred cccEEEeeEEEEEccCCCCCcEEEEEEECCCCc-cceeeeeeccccc---cceeceeCCCCCeEEEEe
Confidence 135566789999963 22346789998876 2223344443322 1334333 56777765
No 99
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.47 E-value=5.1 Score=35.33 Aligned_cols=187 Identities=10% Similarity=0.049 Sum_probs=101.6
Q ss_pred CeEEEEECCCCcEeecCCC-CCCCcceeeeeeC--CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEE
Q 016421 155 FAIWKYSLVFRSWMKCEGM-NHPRCLFGSGSLG--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 231 (390)
+.+-++|+.+..-++.+-. ..+-...-..+++ +.++..|-....+ .+||.++.-+..+ .|..-.....+
T Consensus 124 ~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfp-aPqG~gpyGi~ 195 (353)
T COG4257 124 LAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFP-APQGGGPYGIC 195 (353)
T ss_pred ceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccce-------ecCcccCceeeec-cCCCCCCcceE
Confidence 3788899988877665432 1222333344443 5676665322111 4566666544332 23222222333
Q ss_pred -EECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCce
Q 016421 232 -FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 232 -~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
.-+|.+|+..-. -+-+...|+.+..=..++....... ..|. .-+--.|++++..-....+++|||...+|
T Consensus 196 atpdGsvwyasla------gnaiaridp~~~~aev~p~P~~~~~-gsRr--iwsdpig~~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 196 ATPDGSVWYASLA------GNAIARIDPFAGHAEVVPQPNALKA-GSRR--IWSDPIGRAWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred ECCCCcEEEEecc------ccceEEcccccCCcceecCCCcccc-cccc--cccCccCcEEEeccCCceeeEeCcccccc
Confidence 358899886322 2345667888775444433222111 1111 12345678888876778999999999999
Q ss_pred EEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecc
Q 016421 311 DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAE 374 (390)
Q Consensus 311 ~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~ 374 (390)
.+-. ||...-. .+. -.|.-.|++++---.. ..|..|||++ .+.+++..
T Consensus 267 ~eyp-LPgs~ar--pys-~rVD~~grVW~sea~a------gai~rfdpet------a~ftv~p~ 314 (353)
T COG4257 267 IEYP-LPGSKAR--PYS-MRVDRHGRVWLSEADA------GAIGRFDPET------ARFTVLPI 314 (353)
T ss_pred eeee-CCCCCCC--cce-eeeccCCcEEeecccc------CceeecCccc------ceEEEecC
Confidence 9843 3322111 121 2333456676644322 2588899998 67877754
No 100
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.34 E-value=6.4 Score=36.12 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=88.7
Q ss_pred EEEEEe-CCCeeEEEecCC-CceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECC-CCcEeecCCCC
Q 016421 99 WVYLVC-DPRGWEAFDPMK-KKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLV-FRSWMKCEGMN 174 (390)
Q Consensus 99 ~l~~~~-~~~~~~~~d~~~-~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~-t~~W~~~~~~~ 174 (390)
.+|+.. ....+..||..+ .++..+..++...... ...+.. ++.+|+.+. ....+..|+.. .+++..+...+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~---~l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~~ 77 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ---PMVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAESP 77 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc---cEEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeeec
Confidence 355553 356677777753 4555444443211111 112222 345666543 24566667765 44565443332
Q ss_pred CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCCcCceEEEE-CC-EEEEEecccCCCc
Q 016421 175 HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPRRLCSGFFM-DG-KFYVIGGMSSPTV 248 (390)
Q Consensus 175 ~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~ 248 (390)
.......++.. +..+|+.... ...+.+||..++. .+.+...+.....|.++.. ++ .+|+..-
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------ 145 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------ 145 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------
Confidence 22111122222 3456666421 2457778775331 1122222222223444333 44 5666532
Q ss_pred cCceEEEEeCCCCc-eEEcc----CCCCCCCCcCCCCCEEEE-EC-CEEEEEecCCCeEEEEeCC--CCceEEc
Q 016421 249 SLTCGEEFDLETRK-WRKIE----GMYPNVNRAAQAPPLVAV-VD-NQLYAVEYLTNMVKKYDKL--KNTWDVL 313 (390)
Q Consensus 249 ~~~~v~~yd~~~~~-W~~~~----~~~~~~~~~~~~~~~~~~-~~-g~l~v~gg~~~~v~~yd~~--~~~W~~v 313 (390)
..+.+.+||+.+.. ..... ..+.. .+++ .++. -+ ..+|+.....+.+.+||.. +++.+.+
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g--~~p~---~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEG--AGPR---HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCC--CCCc---eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 23467889887632 22110 11111 1111 2333 23 3678887767889888876 4455443
No 101
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.31 E-value=9.2 Score=40.03 Aligned_cols=182 Identities=12% Similarity=0.116 Sum_probs=89.3
Q ss_pred EEEEEcccccCCeEEEEECCCCcEeecCCCCCC-Ccceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 144 ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHP-RCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 144 ~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
..++.++ .+..+.+||..+++-.. .+... ..-.+++. .++.+++.||.++ .+.+||..++.-...
T Consensus 546 ~~las~~--~Dg~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~-- 613 (793)
T PLN00181 546 SQVASSN--FEGVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQGVSIGT-- 613 (793)
T ss_pred CEEEEEe--CCCeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCCcEEEE--
Confidence 3444444 24578889987764322 11111 11122322 2456777777543 478888876542211
Q ss_pred CCCCCcCceEEE---ECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 221 MHSPRRLCSGFF---MDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 221 ~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
+... .....+. -++.+++.|+.+ ..+..||+.+.. ...+... ......+...++..++.++
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h-------~~~V~~v~f~~~~~lvs~s 679 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGH-------SKTVSYVRFVDSSTLVSSS 679 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCC-------CCCEEEEEEeCCCEEEEEE
Confidence 1111 1111222 246777777654 357789987643 1111111 1011123345677777777
Q ss_pred CCCeEEEEeCCCC----ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 296 LTNMVKKYDKLKN----TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 296 ~~~~v~~yd~~~~----~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.-+.+..||.... .|..+..+...... ........++.+++.|+.++ .|.+|+...
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~---i~~v~~s~~~~~lasgs~D~------~v~iw~~~~ 739 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNV---KNFVGLSVSDGYIATGSETN------EVFVYHKAF 739 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCC---eeEEEEcCCCCEEEEEeCCC------EEEEEECCC
Confidence 7788999998643 24333322211100 00111233567777777553 477777654
No 102
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.13 E-value=1.5 Score=34.13 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=55.2
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC---CCCCcCceEEEECCEEEEEecccCCCccCceEEEE-eCC
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM---HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEF-DLE 259 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y-d~~ 259 (390)
.++|.+|-...... .....+..||..+.+|+.+... .........+.++|+|-++.-........-.+++. |..
T Consensus 3 cinGvly~~a~~~~--~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWSED--SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEECC--CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 45888888876521 2357799999999999887532 22344566778999998886544322123456666 567
Q ss_pred CCceEEccC
Q 016421 260 TRKWRKIEG 268 (390)
Q Consensus 260 ~~~W~~~~~ 268 (390)
+++|++...
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 789987643
No 103
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.04 E-value=8.7 Score=36.79 Aligned_cols=146 Identities=10% Similarity=-0.030 Sum_probs=83.9
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
..++|++|..+++=+.+...+..........-+.+|.+.-...+ ..+++.+|..++.++.+...+..-... ...-
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~d~~p-~~SP 286 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGIDVNG-NFVE 286 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCccCcc-EECC
Confidence 45899999988877766543221111111112345655543322 367999999999999886544311111 1222
Q ss_pred CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEecC--------CCeEEEE
Q 016421 234 DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEYL--------TNMVKKY 303 (390)
Q Consensus 234 ~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg~--------~~~v~~y 303 (390)
+| +||+.....+ ...++.+|..+++.+++..... ... ...-+|+ |...... ...++.+
T Consensus 287 DG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-------~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 287 DDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-------NNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-------cCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 44 6777654322 3578999999988876643211 111 2233444 3333221 2578999
Q ss_pred eCCCCceEEccCC
Q 016421 304 DKLKNTWDVLGRL 316 (390)
Q Consensus 304 d~~~~~W~~v~~~ 316 (390)
|++++.++.+...
T Consensus 355 d~~~g~~~~LT~~ 367 (419)
T PRK04043 355 STNSDYIRRLTAN 367 (419)
T ss_pred ECCCCCeEECCCC
Confidence 9999999888653
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.88 E-value=8.6 Score=36.36 Aligned_cols=230 Identities=11% Similarity=0.103 Sum_probs=111.9
Q ss_pred cccEEEEEeCCCeeEEEecCCCceee-CCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcE-eec--C
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKKKWMA-LPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSW-MKC--E 171 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W-~~~--~ 171 (390)
..+.-++......+..|+..+..-.+ +..... ......+..++.+++.|+. +..+-+||..++.- +.+ .
T Consensus 37 ~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD~--sG~V~vfD~k~r~iLR~~~ah 109 (487)
T KOG0310|consen 37 KHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGDE--SGHVKVFDMKSRVILRQLYAH 109 (487)
T ss_pred CCCCceEEecccEEEEEecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccCC--cCcEEEeccccHHHHHHHhhc
Confidence 34555555566677778766543211 111111 1112234457999999874 45788899444221 111 1
Q ss_pred CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcC---ceEEEECCEEEEEecccCCCc
Q 016421 172 GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRL---CSGFFMDGKFYVIGGMSSPTV 248 (390)
Q Consensus 172 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~---~~~~~~~~~iyv~GG~~~~~~ 248 (390)
..|..+. --...++.+++.|+-+. .+..+|..+.. .. ..+.....+ .+....++.|.+.||+++
T Consensus 110 ~apv~~~--~f~~~d~t~l~s~sDd~------v~k~~d~s~a~-v~-~~l~~htDYVR~g~~~~~~~hivvtGsYDg--- 176 (487)
T KOG0310|consen 110 QAPVHVT--KFSPQDNTMLVSGSDDK------VVKYWDLSTAY-VQ-AELSGHTDYVRCGDISPANDHIVVTGSYDG--- 176 (487)
T ss_pred cCceeEE--EecccCCeEEEecCCCc------eEEEEEcCCcE-EE-EEecCCcceeEeeccccCCCeEEEecCCCc---
Confidence 1122222 22345889999887432 23445554444 21 122222111 223345789999999875
Q ss_pred cCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEE-ecCCCeEEEEeCCCCceEEccCCCccccCCCcc
Q 016421 249 SLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAV-EYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGW 326 (390)
Q Consensus 249 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~-gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~ 326 (390)
.|-.||+.+.+ ..+..+....... .+..+ +|.+++. || +.+-+||..++. ..+..+......
T Consensus 177 ---~vrl~DtR~~~-~~v~elnhg~pVe-----~vl~lpsgs~iasAgG--n~vkVWDl~~G~-qll~~~~~H~Kt---- 240 (487)
T KOG0310|consen 177 ---KVRLWDTRSLT-SRVVELNHGCPVE-----SVLALPSGSLIASAGG--NSVKVWDLTTGG-QLLTSMFNHNKT---- 240 (487)
T ss_pred ---eEEEEEeccCC-ceeEEecCCCcee-----eEEEcCCCCEEEEcCC--CeEEEEEecCCc-eehhhhhcccce----
Confidence 35568888874 2222222211000 13333 3344443 44 578889987543 122222211110
Q ss_pred eeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 327 GLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 327 ~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
-+++... ++.=.+-||-++ .+.+||.. .|+.+-++
T Consensus 241 VTcL~l~s~~~rLlS~sLD~------~VKVfd~t--------~~Kvv~s~ 276 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDR------HVKVFDTT--------NYKVVHSW 276 (487)
T ss_pred EEEEEeecCCceEeeccccc------ceEEEEcc--------ceEEEEee
Confidence 1222222 345555566554 37789853 47777654
No 105
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.69 E-value=6.1 Score=34.17 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=65.9
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEee-cCCCCCCCcceeeeeeC-CEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMK-CEGMNHPRCLFGSGSLG-SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
+.+++.++ ....+.+||..+.+-.. +.. .......+.... +.+++.|+.+ ..+.+||..+++-.. .
T Consensus 105 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~--~ 172 (289)
T cd00200 105 GRILSSSS--RDKTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVA--T 172 (289)
T ss_pred CCEEEEec--CCCeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccce--e
Confidence 45555554 24578899987554322 221 111111222222 3444444322 347889887543211 1
Q ss_pred CCCCCcCc-eEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC-CEEEEEecCC
Q 016421 221 MHSPRRLC-SGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD-NQLYAVEYLT 297 (390)
Q Consensus 221 ~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-g~l~v~gg~~ 297 (390)
+....... ..... +++.+++++.+ ..+..||..+.+-... +... ......+.... +.+++.++..
T Consensus 173 ~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~--~~~~----~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 173 LTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLSTGKCLGT--LRGH----ENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EecCccccceEEECCCcCEEEEecCC------CcEEEEECCCCceecc--hhhc----CCceEEEEEcCCCcEEEEEcCC
Confidence 11111111 22222 44345555432 2467788876443222 1110 00111233333 5666666557
Q ss_pred CeEEEEeCCCCc
Q 016421 298 NMVKKYDKLKNT 309 (390)
Q Consensus 298 ~~v~~yd~~~~~ 309 (390)
+.+..||..+.+
T Consensus 241 ~~i~i~~~~~~~ 252 (289)
T cd00200 241 GTIRVWDLRTGE 252 (289)
T ss_pred CcEEEEEcCCce
Confidence 889999987643
No 106
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.44 E-value=11 Score=36.31 Aligned_cols=182 Identities=12% Similarity=0.021 Sum_probs=92.3
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++++|..+++-+.+...+..-.......-+.+|++.....+ ..+++++|..++..+.+..-...-. .....-
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~~~-~~~wSP 296 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSNNT-EPTWFP 296 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCCcC-ceEECC
Confidence 35788888888776666554332221111122345655533222 2458999999988877654322111 111122
Q ss_pred CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEec--CCCeEEEEeCCCCc
Q 016421 234 DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEY--LTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg--~~~~v~~yd~~~~~ 309 (390)
+|+ |+......+ ...++.+|+.+..-.++...... .......-+|+ |++.+. ....++.+|+++++
T Consensus 297 DG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~~------~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 297 DSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGSQ------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCCC------ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 554 444332211 24688889988776665322110 01112233444 444432 23468899999999
Q ss_pred eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 310 WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 310 W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+..+....... ... ..-+|+.+++.+.++. ...++..+.+.
T Consensus 367 ~~~Lt~~~~~~------~p~-~SpDG~~i~~~s~~~~---~~~l~~~~~~G 407 (429)
T PRK03629 367 VQVLTDTFLDE------TPS-IAPNGTMVIYSSSQGM---GSVLNLVSTDG 407 (429)
T ss_pred eEEeCCCCCCC------Cce-ECCCCCEEEEEEcCCC---ceEEEEEECCC
Confidence 88876421111 122 2346666666554432 22355666543
No 107
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=91.95 E-value=12 Score=35.66 Aligned_cols=124 Identities=11% Similarity=0.104 Sum_probs=62.4
Q ss_pred cceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 202 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..++++++.+.++=+.+.=...+-...++-.-+|.|.|..-....- ..-.+.|-...+--. ..+++... +.
T Consensus 106 taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF--~q~~~lYkv~~dg~~-~e~LnlGp--at---- 176 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPF--SQWTELYKVNVDGIK-TEPLNLGP--AT---- 176 (668)
T ss_pred cccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCc--ccceeeeEEccCCce-eeeccCCc--ee----
Confidence 4678899999888777643321111122224578888774433221 111222333222210 11111110 01
Q ss_pred EEEEECCEEEEEe--------------cCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcC
Q 016421 282 LVAVVDNQLYAVE--------------YLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 282 ~~~~~~g~l~v~g--------------g~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 342 (390)
..+.-+|. .++| |..+.+|+=--...+.+++-.|+...+ +-+.++++||.+..
T Consensus 177 hiv~~dg~-ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS-------~PmIV~~RvYFlsD 243 (668)
T COG4946 177 HIVIKDGI-IVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVS-------SPMIVGERVYFLSD 243 (668)
T ss_pred eEEEeCCE-EEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcC-------CceEEcceEEEEec
Confidence 24455664 4444 344677776555557888877776543 23356777777763
No 108
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.76 E-value=10 Score=34.69 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=80.8
Q ss_pred CEEEEEeccC-C--CCCcc-ceEEEEECCCC-----cEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEe
Q 016421 187 SIAIIAGGSD-K--NGHVL-KSAELYDSTTG-----RWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFD 257 (390)
Q Consensus 187 ~~lyv~GG~~-~--~~~~~-~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 257 (390)
...+++|... . ..... -.+.+|+.... +.+.+.....+-.-.+.+.++|+|.+..| ..+..|+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~ 113 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYD 113 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEE
Confidence 4566666432 1 11122 56888988875 55555433333223455667888666544 3577788
Q ss_pred CCCCc-eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC-CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe-C
Q 016421 258 LETRK-WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT-NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC-G 334 (390)
Q Consensus 258 ~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~-~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~-~ 334 (390)
...++ +...+.+..+. ....+.+.++.|++.+... -.+..|+.+.++-..++.-..+. +..++..+ +
T Consensus 114 l~~~~~l~~~~~~~~~~-----~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-----~v~~~~~l~d 183 (321)
T PF03178_consen 114 LDNSKTLLKKAFYDSPF-----YITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-----WVTAAEFLVD 183 (321)
T ss_dssp EETTSSEEEEEEE-BSS-----SEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-----EEEEEEEE-S
T ss_pred ccCcccchhhheecceE-----EEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-----cEEEEEEecC
Confidence 88877 88777655422 2234667788766655432 24556788666677776433222 23445455 5
Q ss_pred CEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 335 NELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 335 ~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+..++++-..+ .--++.|+++.
T Consensus 184 ~~~~i~~D~~g----nl~~l~~~~~~ 205 (321)
T PF03178_consen 184 EDTIIVGDKDG----NLFVLRYNPEI 205 (321)
T ss_dssp SSEEEEEETTS----EEEEEEE-SS-
T ss_pred CcEEEEEcCCC----eEEEEEECCCC
Confidence 55444444332 22355666544
No 109
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.66 E-value=8 Score=33.24 Aligned_cols=188 Identities=11% Similarity=0.080 Sum_probs=101.3
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeC--CEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLG--SIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
.++.=|+.||. +..+.+||..|++--+- +...-.....+.++ ..+.+-|+.+ +++..+|..+++-+.+
T Consensus 69 ~Dnskf~s~Gg--Dk~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 69 SDNSKFASCGG--DKAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPI 138 (307)
T ss_pred ccccccccCCC--CceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc------ceeEEEEcccCCCCcc
Confidence 34544555542 45788999998764221 11111122333343 3555556543 5588999999998888
Q ss_pred CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCC
Q 016421 219 PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTN 298 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~ 298 (390)
.-+...+..-..+.+.+...+.|..++ .+-.||+..++-.. ..+..+. ......-++.-.++|..-.
T Consensus 139 Qildea~D~V~Si~v~~heIvaGS~DG------tvRtydiR~G~l~s-Dy~g~pi------t~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVAEHEIVAGSVDG------TVRTYDIRKGTLSS-DYFGHPI------TSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred chhhhhcCceeEEEecccEEEeeccCC------cEEEEEeecceeeh-hhcCCcc------eeEEecCCCCEEEEeeccc
Confidence 888888888888888888888776654 35569988766431 1111110 0012223444444444444
Q ss_pred eEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 299 MVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 299 ~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+...|.++++--....--.... +-.-++..+..-.|++|.++- .|+.||..+
T Consensus 206 tlrLlDk~tGklL~sYkGhkn~e----ykldc~l~qsdthV~sgSEDG-----~Vy~wdLvd 258 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSYKGHKNME----YKLDCCLNQSDTHVFSGSEDG-----KVYFWDLVD 258 (307)
T ss_pred eeeecccchhHHHHHhcccccce----eeeeeeecccceeEEeccCCc-----eEEEEEecc
Confidence 55566666654222110000011 112333444555666664421 488888876
No 110
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.23 E-value=12 Score=34.61 Aligned_cols=185 Identities=14% Similarity=0.110 Sum_probs=90.3
Q ss_pred eEEEEECCCCcEeecCCCCCC--CcceeeeeeCCEEEEEeccCCCCCccceEEEE--ECCCCcEEEcCCCCCCCcCceEE
Q 016421 156 AIWKYSLVFRSWMKCEGMNHP--RCLFGSGSLGSIAIIAGGSDKNGHVLKSAELY--DSTTGRWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y--d~~t~~W~~~~~~~~~r~~~~~~ 231 (390)
.++.||..++++..+...... ........-+..||+...... ....+..| +..+++.+.+...+........+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~---~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSG---DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSS---TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcccc---CCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 345677789988766542111 111122224678999865431 12334445 44557888776655332233333
Q ss_pred EE--CC-EEEEEecccCCCccCceEEEEeCCCC-ceEEccC-------CCCCCCCcCCCCCEEEEE--CCEEEEEecCCC
Q 016421 232 FM--DG-KFYVIGGMSSPTVSLTCGEEFDLETR-KWRKIEG-------MYPNVNRAAQAPPLVAVV--DNQLYAVEYLTN 298 (390)
Q Consensus 232 ~~--~~-~iyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~-------~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~ 298 (390)
.+ ++ .||+. .+. ...+.+|++..+ .-..... -|..........|.+... +..+|+.+-...
T Consensus 93 ~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 93 AVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp EECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred EEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 33 34 55554 222 335667777764 2222211 011100011122334443 346888887778
Q ss_pred eEEEEeCCCCc--eEEccCC--CccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 299 MVKKYDKLKNT--WDVLGRL--PVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 299 ~v~~yd~~~~~--W~~v~~~--~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
.|++|+.+.+. ......+ +.....| +.+.. -+..+|++....+ .|.+|+..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPR----h~~f~pdg~~~Yv~~e~s~------~v~v~~~~ 222 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPR----HLAFSPDGKYAYVVNELSN------TVSVFDYD 222 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEE----EEEE-TTSSEEEEEETTTT------EEEEEEEE
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCc----EEEEcCCcCEEEEecCCCC------cEEEEeec
Confidence 99999887765 6553322 2221111 22222 2457999987542 45555554
No 111
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=91.09 E-value=14 Score=35.04 Aligned_cols=138 Identities=13% Similarity=-0.016 Sum_probs=72.9
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..++++|..++.-+.+......... ....-+| .|++....++ ...++.+|+.++....+....... ..+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~-----~~~ 283 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGID-----TEP 283 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCC-----CCE
Confidence 5789999998876665443322221 1122355 4655533221 246888999988877765432210 011
Q ss_pred EEEEECC-EEEEEec--CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 282 LVAVVDN-QLYAVEY--LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 282 ~~~~~~g-~l~v~gg--~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
....+| +|+.... ....++.+|..+.++..+..-.... ... ...-+++.+++..... ....|+.+|+
T Consensus 284 -~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~-----~~~-~~spdg~~i~~~~~~~---~~~~i~~~d~ 353 (417)
T TIGR02800 284 -SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN-----ASP-SWSPDGDLIAFVHREG---GGFNIAVMDL 353 (417)
T ss_pred -EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc-----cCe-EECCCCCEEEEEEccC---CceEEEEEeC
Confidence 112244 4444432 2347999999888887765321111 111 2223455555544332 2235888888
Q ss_pred CC
Q 016421 359 KS 360 (390)
Q Consensus 359 ~~ 360 (390)
.+
T Consensus 354 ~~ 355 (417)
T TIGR02800 354 DG 355 (417)
T ss_pred CC
Confidence 76
No 112
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.81 E-value=16 Score=35.12 Aligned_cols=139 Identities=12% Similarity=0.081 Sum_probs=73.8
Q ss_pred cceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016421 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 202 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
...++++|..+++-+.+...+.... .....-+| +|++....++ ...++.+|+.++.-.++...... ...
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~-----~~~ 296 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGI-----DTE 296 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCC-----ccc
Confidence 3568999999988877765442211 11222345 5655433322 24689999998887666433211 011
Q ss_pred CEEEEECCE-EEEEecC--CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeec
Q 016421 281 PLVAVVDNQ-LYAVEYL--TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 281 ~~~~~~~g~-l~v~gg~--~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~ 357 (390)
....-+|+ |+..... ...++.+|..+++.+.+..-. ... ...+....++.|++..+.. ....|++||
T Consensus 297 -~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g--~~~---~~~~~SpDG~~Ia~~~~~~----~~~~I~v~d 366 (433)
T PRK04922 297 -PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG--NYN---ARASVSPDGKKIAMVHGSG----GQYRIAVMD 366 (433)
T ss_pred -eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC--CCc---cCEEECCCCCEEEEEECCC----CceeEEEEE
Confidence 12233454 4444322 246888898888887765211 110 1122222345566655422 122688888
Q ss_pred CCC
Q 016421 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
+.+
T Consensus 367 ~~~ 369 (433)
T PRK04922 367 LST 369 (433)
T ss_pred CCC
Confidence 876
No 113
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=90.67 E-value=10 Score=32.74 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=79.7
Q ss_pred cEEEcCCCCC-----CCcCceEE-EECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC
Q 016421 214 RWEMLPSMHS-----PRRLCSGF-FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD 287 (390)
Q Consensus 214 ~W~~~~~~~~-----~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
.|+..+||.. |-.+.-.. ...|.|+..||. ..++..|.++++.+..-.- +..+.++++.-+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rG------HtDYvH~vv~R~ 166 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRG------HTDYVHSVVGRN 166 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcC------Ccceeeeeeecc
Confidence 4777766644 22221111 246788888864 2477889999988754321 123444444422
Q ss_pred -CEEEEEecCCCeEEEEeCCCCceEEc-cCCCccccCCCccee--EEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCC
Q 016421 288 -NQLYAVEYLTNMVKKYDKLKNTWDVL-GRLPVRADLSNGWGL--AFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVN 363 (390)
Q Consensus 288 -g~l~v~gg~~~~v~~yd~~~~~W~~v-~~~~~~~~~~~~~~~--~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~ 363 (390)
+.-.+-|+.-+.+.+||..+.+-.++ ..-..+...|..+|- .+.+.+....++||-. .+-.|...+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-------~lslwhLrs--- 236 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-------KLSLWHLRS--- 236 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-------ceeEEeccC---
Confidence 22344466678899999999876553 332222222323332 4445566666677633 233555554
Q ss_pred CCCCceEEecccC---ccCeEEeeeeeec
Q 016421 364 NGTLDWKVLAEKQ---HVGVFVYNCAVLG 389 (390)
Q Consensus 364 ~~~~~W~~~~~~p---~~~~~~~~~~~~~ 389 (390)
.+-+.+=+.| +.-.|...|.++|
T Consensus 237 ---se~t~vfpipa~v~~v~F~~d~vl~~ 262 (325)
T KOG0649|consen 237 ---SESTCVFPIPARVHLVDFVDDCVLIG 262 (325)
T ss_pred ---CCceEEEecccceeEeeeecceEEEe
Confidence 3444443333 4445555555543
No 114
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.56 E-value=11 Score=33.06 Aligned_cols=181 Identities=13% Similarity=0.096 Sum_probs=98.7
Q ss_pred CCEEEEEcccccCCeEEEEECC-----CCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--
Q 016421 142 GSELLVFGRELFDFAIWKYSLV-----FRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-- 214 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~-----t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-- 214 (390)
.+++|++.+.... .++.|... .++....-.+|.+..+.+.++++|.+|..-. ..+.+..||+.++.
T Consensus 30 ~~~iy~~~~~~~~-~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~ 102 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVV 102 (250)
T ss_pred CCCEEEECccCCC-EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEE
Confidence 4577777765433 55555332 2333333346666777788889999988743 35779999999886
Q ss_pred -EEEcCCCCCC------CcCc---eEEEECCEEEEEecccCCCccCceEEEEeCCC----CceEEccCCCCCCCCcCCCC
Q 016421 215 -WEMLPSMHSP------RRLC---SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLET----RKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 215 -W~~~~~~~~~------r~~~---~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~~~~~~~~~ 280 (390)
+..++..... ...+ -.++=++-|+|+-...... ..-.+-..|+.+ .+|..- .+.+ ..
T Consensus 103 ~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-g~ivvskld~~tL~v~~tw~T~--~~k~------~~ 173 (250)
T PF02191_consen 103 ARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-GNIVVSKLDPETLSVEQTWNTS--YPKR------SA 173 (250)
T ss_pred EEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-CcEEEEeeCcccCceEEEEEec--cCch------hh
Confidence 4455433211 1111 2223344566664433211 011233466665 356642 2221 11
Q ss_pred CEEEEECCEEEEEecC----CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe---CCEEEEEcC
Q 016421 281 PLVAVVDNQLYAVEYL----TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC---GNELLVVGG 342 (390)
Q Consensus 281 ~~~~~~~g~l~v~gg~----~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~---~~~lyv~GG 342 (390)
..+..+-|.||++... ..-.+.||..+++=..+ .++...... ..+.+.+ +.+||+..-
T Consensus 174 ~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~-~i~f~~~~~---~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 174 GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV-SIPFPNPYG---NISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceece-eeeeccccC---ceEeeeECCCCCeEEEEEC
Confidence 2356677899999753 23457899998865433 333333221 1344444 567887764
No 115
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=90.50 E-value=11 Score=32.73 Aligned_cols=247 Identities=12% Similarity=0.010 Sum_probs=113.3
Q ss_pred eCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee
Q 016421 104 CDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG 183 (390)
Q Consensus 104 ~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 183 (390)
++-+.+..||..+++-.++.....+. .......+-.+++....||++ ..+-++|....+-.+.-..+.+.. .++
T Consensus 58 a~~qhvRlyD~~S~np~Pv~t~e~h~--kNVtaVgF~~dgrWMyTgseD--gt~kIWdlR~~~~qR~~~~~spVn--~vv 131 (311)
T KOG0315|consen 58 AGNQHVRLYDLNSNNPNPVATFEGHT--KNVTAVGFQCDGRWMYTGSED--GTVKIWDLRSLSCQRNYQHNSPVN--TVV 131 (311)
T ss_pred ccCCeeEEEEccCCCCCceeEEeccC--CceEEEEEeecCeEEEecCCC--ceEEEEeccCcccchhccCCCCcc--eEE
Confidence 45678889999877432222111111 111122334567777777754 455666765533322222222211 111
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcC-ceEEE-ECCEEEEEecccCCCccCceEEEEeCCCC
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRL-CSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
..-+.-=+|.|-. .-.++++|+..+..... .+|..-.. .+..+ -+|++.+. ..+. ..++++++.+.
T Consensus 132 lhpnQteLis~dq-----sg~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~a-~nnk-----G~cyvW~l~~~ 199 (311)
T KOG0315|consen 132 LHPNQTELISGDQ-----SGNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLAA-ANNK-----GNCYVWRLLNH 199 (311)
T ss_pred ecCCcceEEeecC-----CCcEEEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEEE-ecCC-----ccEEEEEccCC
Confidence 2222222232321 33589999999976543 23433222 22333 35664443 3332 23566666654
Q ss_pred ce-EEccCCCCCCCCcCCCC-CEEEEECCEEEEEecCCCeEEEEeCCCCceEEcc-CCCccccCCCcceeEEEEeCCEEE
Q 016421 262 KW-RKIEGMYPNVNRAAQAP-PLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLG-RLPVRADLSNGWGLAFKACGNELL 338 (390)
Q Consensus 262 ~W-~~~~~~~~~~~~~~~~~-~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~-~~~~~~~~~~~~~~~~~~~~~~ly 338 (390)
+- +++.+.-.-.. +.++. .+...-+++.++..+.-..+.+|+.++- -+.. .+... .+-.|.++ ...++.-+
T Consensus 200 ~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh--~rWvWdc~-FS~dg~Yl 273 (311)
T KOG0315|consen 200 QTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGH--QRWVWDCA-FSADGEYL 273 (311)
T ss_pred CccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecC--CceEEeee-eccCccEE
Confidence 32 22222211110 01111 1223346676666667788899987776 2221 11111 11224332 23455555
Q ss_pred EEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeeeeee
Q 016421 339 VVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVL 388 (390)
Q Consensus 339 v~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~ 388 (390)
+.|+.+. .+..||++.+ +++..-++......||++.
T Consensus 274 vTassd~------~~rlW~~~~~--------k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VTASSDH------TARLWDLSAG--------KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCCC------ceeecccccC--------ceeeecCCcccccEEEEee
Confidence 5555331 4668998873 2333333444555555554
No 116
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.23 E-value=3.8 Score=37.55 Aligned_cols=133 Identities=13% Similarity=0.041 Sum_probs=75.3
Q ss_pred CeEEEEECCCC-----cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc-EEEcCCCCCCCcCc
Q 016421 155 FAIWKYSLVFR-----SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR-WEMLPSMHSPRRLC 228 (390)
Q Consensus 155 ~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~ 228 (390)
..+++|+.... +.+.+.....+-.-.+++.+++++.+..| +.+.+|+..... +...+.+..+-...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEEEE
Confidence 56888888874 55555443333344567777888766655 457888888877 87776665555555
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCCCeEE--EEeC
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLTNMVK--KYDK 305 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~~~v~--~yd~ 305 (390)
+...+++.|++- -.. ..-.+..|+....+-..++.-..+ +...++..+ ++..++++-..+.+. .|++
T Consensus 134 sl~~~~~~I~vg-D~~----~sv~~~~~~~~~~~l~~va~d~~~-----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 134 SLSVFKNYILVG-DAM----KSVSLLRYDEENNKLILVARDYQP-----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTEEEEE-ESS----SSEEEEEEETTTE-EEEEEEESS------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEeccccEEEEE-Ecc----cCEEEEEEEccCCEEEEEEecCCC-----ccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 566778876653 221 123455678877667776643332 122234455 654444443444444 4554
No 117
>PRK00178 tolB translocation protein TolB; Provisional
Probab=89.94 E-value=19 Score=34.53 Aligned_cols=138 Identities=16% Similarity=0.088 Sum_probs=73.7
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..++++|+.+++-+.+...+..-. .....-+| +|++....++ ...++.+|+.+...+.+....... ..+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~-----~~~ 292 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAID-----TEP 292 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCc-----CCe
Confidence 579999999998877754432111 11112244 4554432221 257899999999888775432210 111
Q ss_pred EEEEECC-EEEEEec--CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 282 LVAVVDN-QLYAVEY--LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 282 ~~~~~~g-~l~v~gg--~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
...-+| +|+.... ....++.+|..++++..+..... . .........++.|+......+ ...++.+|+
T Consensus 293 -~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~-~----~~~~~~Spdg~~i~~~~~~~~----~~~l~~~dl 362 (430)
T PRK00178 293 -FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN-Y----NARPRLSADGKTLVMVHRQDG----NFHVAAQDL 362 (430)
T ss_pred -EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-C----ccceEECCCCCEEEEEEccCC----ceEEEEEEC
Confidence 222344 4555432 23478899999988887642111 0 011122223455655543221 225888888
Q ss_pred CC
Q 016421 359 KS 360 (390)
Q Consensus 359 ~~ 360 (390)
.+
T Consensus 363 ~t 364 (430)
T PRK00178 363 QR 364 (430)
T ss_pred CC
Confidence 76
No 118
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=89.69 E-value=17 Score=33.76 Aligned_cols=63 Identities=8% Similarity=0.114 Sum_probs=38.9
Q ss_pred CCEEEEEe-c--------CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCC-EEEEEcCCCCCCCCeEEEeee
Q 016421 287 DNQLYAVE-Y--------LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGN-ELLVVGGQRGPEGENVVLNSW 356 (390)
Q Consensus 287 ~g~l~v~g-g--------~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~i~~y 356 (390)
++++|+.. + ..+.|+++|..+ ++.+..++..... ++.++..-+. .||+..+..+ +|.++
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t--~kvi~~i~vG~~~---~~iavS~Dgkp~lyvtn~~s~------~VsVi 327 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKT--GKRLRKIELGHEI---DSINVSQDAKPLLYALSTGDK------TLYIF 327 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCC--CeEEEEEeCCCce---eeEEECCCCCeEEEEeCCCCC------cEEEE
Confidence 57899842 2 236899999655 4555555444321 3344434455 7888877543 58899
Q ss_pred cCCC
Q 016421 357 CPKS 360 (390)
Q Consensus 357 ~~~~ 360 (390)
|..+
T Consensus 328 D~~t 331 (352)
T TIGR02658 328 DAET 331 (352)
T ss_pred ECcC
Confidence 9877
No 119
>PRK04792 tolB translocation protein TolB; Provisional
Probab=89.62 E-value=21 Score=34.58 Aligned_cols=138 Identities=12% Similarity=0.003 Sum_probs=73.6
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..++++|+.+++-+.+...+..... ....-+| +|++....++ ...++.+|+.+++.+++....... ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~-~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~-----~~- 310 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGA-PRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAID-----TE- 310 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCC-eeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCc-----cc-
Confidence 5799999998887766544322111 1122244 4655543322 346889999999888775432110 11
Q ss_pred EEEEECCE-EEEEec--CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 282 LVAVVDNQ-LYAVEY--LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 282 ~~~~~~g~-l~v~gg--~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
....-+|+ |++... ....++.+|.+++++..+..-. ... .+.+...-++.|+..+... ....|+.+|+
T Consensus 311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~---~~~~~SpDG~~l~~~~~~~----g~~~I~~~dl 381 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQN---LGGSITPDGRSMIMVNRTN----GKFNIARQDL 381 (448)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCC---cCeeECCCCCEEEEEEecC----CceEEEEEEC
Confidence 12223444 444432 2357899999999988874211 110 1122222344555544322 1235788888
Q ss_pred CC
Q 016421 359 KS 360 (390)
Q Consensus 359 ~~ 360 (390)
++
T Consensus 382 ~~ 383 (448)
T PRK04792 382 ET 383 (448)
T ss_pred CC
Confidence 76
No 120
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.56 E-value=16 Score=37.89 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=21.4
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCC--ceEEcc
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIE 267 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~ 267 (390)
+-++++|.||+... ...++.+|..|+ .|+.-.
T Consensus 189 TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 189 TPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred CCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcC
Confidence 34578999999743 245777887765 477543
No 121
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.87 E-value=20 Score=33.45 Aligned_cols=135 Identities=12% Similarity=0.122 Sum_probs=69.7
Q ss_pred eEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCC---cEEEcCCCCCCCcCceEE
Q 016421 156 AIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTG---RWEMLPSMHSPRRLCSGF 231 (390)
Q Consensus 156 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~~~~ 231 (390)
.+..+|..|+.-...-+-....+..+++-+ ++.-+|.|+.+ ..+...|...+ .|+-+.. ++-.--++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~---~~v~dlai 362 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD---PKVHDLAI 362 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccccccc---ceeEEEEE
Confidence 367777777655443221111222223322 67778888755 33566666544 5866533 33333333
Q ss_pred EECCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCce
Q 016421 232 FMDGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 232 ~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
..+|+ ++.++ .+ ..+..|+.++..=..+-....+ .......-+|++.++.-..+.+..||.+ .|
T Consensus 363 t~Dgk~vl~v~-~d------~~i~l~~~e~~~dr~lise~~~------its~~iS~d~k~~LvnL~~qei~LWDl~--e~ 427 (519)
T KOG0293|consen 363 TYDGKYVLLVT-VD------KKIRLYNREARVDRGLISEEQP------ITSFSISKDGKLALVNLQDQEIHLWDLE--EN 427 (519)
T ss_pred cCCCcEEEEEe-cc------cceeeechhhhhhhccccccCc------eeEEEEcCCCcEEEEEcccCeeEEeecc--hh
Confidence 45664 44443 22 2344566655432211111110 0012334578888888888899999998 55
Q ss_pred EEcc
Q 016421 311 DVLG 314 (390)
Q Consensus 311 ~~v~ 314 (390)
..+.
T Consensus 428 ~lv~ 431 (519)
T KOG0293|consen 428 KLVR 431 (519)
T ss_pred hHHH
Confidence 5554
No 122
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=88.68 E-value=37 Score=36.83 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=83.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCC----------C---CCCcceeeeee--CCEEEEEeccCCCCCccceEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM----------N---HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAE 206 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~----------~---~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 206 (390)
++.+|+... ..+.+++||+.++.......- . ......+++.- ++.||+.... .+.+.
T Consensus 694 ~g~LyVad~--~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Ir 765 (1057)
T PLN02919 694 NEKVYIAMA--GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIR 765 (1057)
T ss_pred CCeEEEEEC--CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEE
Confidence 456776542 235688888877655432110 0 00111123322 3468988543 35689
Q ss_pred EEECCCCcEEEcC--C--CCC--------------C-CcC-ceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEE
Q 016421 207 LYDSTTGRWEMLP--S--MHS--------------P-RRL-CSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK 265 (390)
Q Consensus 207 ~yd~~t~~W~~~~--~--~~~--------------~-r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 265 (390)
+||+.++.-..+. . .+. . ... .+.+. -+|.|||.-.. .+.|.+||+.++....
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKRVTT 839 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCeEEE
Confidence 9998876533211 0 000 0 011 12222 36789998432 3568889999888776
Q ss_pred ccCCCCC-----CC-CcCC-CCCEEEE-ECCEEEEEecCCCeEEEEeCCCCc
Q 016421 266 IEGMYPN-----VN-RAAQ-APPLVAV-VDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 266 ~~~~~~~-----~~-~~~~-~~~~~~~-~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
+...... .. .+.. ....+++ -+|++||.+...+.|.++|..+++
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 6532210 00 0000 1122333 468999999888999999998875
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.64 E-value=15 Score=31.79 Aligned_cols=55 Identities=20% Similarity=0.509 Sum_probs=30.4
Q ss_pred eCCCCceEE--ccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 304 DKLKNTWDV--LGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 304 d~~~~~W~~--v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
+.+.++|+. +..+|... |...- .+-|.++.++|-+. .+.+|-.+.+ -+|..++..
T Consensus 241 ~~e~e~wk~tll~~f~~~~-----w~vSW-S~sGn~LaVs~GdN------kvtlwke~~~-----Gkw~~v~~~ 297 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVV-----WRVSW-SLSGNILAVSGGDN------KVTLWKENVD-----GKWEEVGEV 297 (299)
T ss_pred cCccCcccccccccCCcce-----EEEEE-eccccEEEEecCCc------EEEEEEeCCC-----CcEEEcccc
Confidence 556678876 34444432 22222 23455555554231 5778877662 379998754
No 124
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.46 E-value=22 Score=33.33 Aligned_cols=203 Identities=15% Similarity=0.065 Sum_probs=106.4
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCc--EeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCC--c
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRS--WMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG--R 214 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~ 214 (390)
+..++.+|+.. ....++-+|+.+.+ |+.....-..........-+++||+- ..++ .+++||..++ .
T Consensus 65 ~~~dg~v~~~~---~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~g------~~y~ld~~~G~~~ 134 (370)
T COG1520 65 ADGDGTVYVGT---RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWDG------KLYALDASTGTLV 134 (370)
T ss_pred EeeCCeEEEec---CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-cccc------eEEEEECCCCcEE
Confidence 45678888862 22378899999887 86543310111111222226787664 3222 5889999766 4
Q ss_pred EEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCC--ceEEccCC--CCCCCCcCCCCCEEEEECCEE
Q 016421 215 WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIEGM--YPNVNRAAQAPPLVAVVDNQL 290 (390)
Q Consensus 215 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~--~~~~~~~~~~~~~~~~~~g~l 290 (390)
|+.-.... .+.....+..++.+|+.. ....++++|..+. .|..-... .... .. ..+..++.+
T Consensus 135 W~~~~~~~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~-----~~-~~~~~~~~v 200 (370)
T COG1520 135 WSRNVGGS-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSI-----YG-SPAIASGTV 200 (370)
T ss_pred EEEecCCC-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCcccccc-----cc-CceeecceE
Confidence 87643332 333333445677777753 1234667777754 58743322 2211 11 122566777
Q ss_pred EEEecC-CCeEEEEeCCCC--ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCC-CCCCCCeEEEeeecCCCCCCCCC
Q 016421 291 YAVEYL-TNMVKKYDKLKN--TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQ-RGPEGENVVLNSWCPKSGVNNGT 366 (390)
Q Consensus 291 ~v~gg~-~~~v~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~-~~~~~~~~~i~~y~~~~~~~~~~ 366 (390)
|+.... ...++.+|++++ .|+.-...+....... ......++.||+-++. ... ....++++|..+ ++
T Consensus 201 y~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~---~~~~~~~~~v~v~~~~~~~~--~~g~~~~l~~~~----G~ 271 (370)
T COG1520 201 YVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAIS---TTPAVDGGPVYVDGGVYAGS--YGGKLLCLDADT----GE 271 (370)
T ss_pred EEecCCCcceEEEEEccCCcEeeeeeeecccCccccc---ccccccCceEEECCcEEEEe--cCCeEEEEEcCC----Cc
Confidence 776432 346899999877 4885322222211100 0012334555555542 111 111377888877 55
Q ss_pred CceEEecc
Q 016421 367 LDWKVLAE 374 (390)
Q Consensus 367 ~~W~~~~~ 374 (390)
..|+.-..
T Consensus 272 ~~W~~~~~ 279 (370)
T COG1520 272 LIWSFPAG 279 (370)
T ss_pred eEEEEecc
Confidence 67876554
No 125
>PRK05137 tolB translocation protein TolB; Provisional
Probab=87.76 E-value=27 Score=33.58 Aligned_cols=147 Identities=9% Similarity=-0.151 Sum_probs=74.6
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...+++.|.....-+.+..-...-.......-+.+|+......+ ...++++|+.++..+.+...+...... ...-
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g----~~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SP 255 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANG----RPRVYLLDLETGQRELVGNFPGMTFAP-RFSP 255 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCC----CCEEEEEECCCCcEEEeecCCCcccCc-EECC
Confidence 45788888755433333321111111111111334444332111 257999999999888776544322111 1223
Q ss_pred CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEec--CCCeEEEEeCCCCc
Q 016421 234 DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEY--LTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg--~~~~v~~yd~~~~~ 309 (390)
+| +|++....++ ...++.+|+.+..-.++...+... .. ....-+|+ |+.... ....++.+|..+.+
T Consensus 256 DG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~-----~~-~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 256 DGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAID-----TS-PSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred CCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCcc-----Cc-eeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 55 4544433222 356888999988877765433210 11 12233444 443321 23478899988877
Q ss_pred eEEccC
Q 016421 310 WDVLGR 315 (390)
Q Consensus 310 W~~v~~ 315 (390)
.+.+..
T Consensus 326 ~~~lt~ 331 (435)
T PRK05137 326 PRRISF 331 (435)
T ss_pred eEEeec
Confidence 777653
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=87.08 E-value=34 Score=34.02 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=53.6
Q ss_pred EEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCC-EEEEEcCCCCCCCCeEEEeeecCCCC
Q 016421 283 VAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGN-ELLVVGGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 283 ~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~i~~y~~~~~ 361 (390)
+.++.....+-|-+.+.|..||.+..+=.+ ........ -.++++.++ .-++++|.++ .|..|...+
T Consensus 210 v~~Lrd~tI~sgDS~G~V~FWd~~~gTLiq--S~~~h~ad----Vl~Lav~~~~d~vfsaGvd~------~ii~~~~~~- 276 (691)
T KOG2048|consen 210 VLFLRDSTIASGDSAGTVTFWDSIFGTLIQ--SHSCHDAD----VLALAVADNEDRVFSAGVDP------KIIQYSLTT- 276 (691)
T ss_pred EEEeecCcEEEecCCceEEEEcccCcchhh--hhhhhhcc----eeEEEEcCCCCeEEEccCCC------ceEEEEecC-
Confidence 445555666667788999999998876322 11111110 133434333 4555566654 366676666
Q ss_pred CCCCCCceEEecccCccCeEEeeeeeecC
Q 016421 362 VNNGTLDWKVLAEKQHVGVFVYNCAVLGC 390 (390)
Q Consensus 362 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ 390 (390)
...+|....+.-...+-+.+.+|++|
T Consensus 277 ---~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 277 ---NKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred ---CccceeeeccccCCcccceeeeeecc
Confidence 22459988876666666677777654
No 127
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.92 E-value=27 Score=32.70 Aligned_cols=241 Identities=12% Similarity=0.042 Sum_probs=121.8
Q ss_pred cccEEEEEeCCCeeEEEecCCCc--eeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCC--cEeecC
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKKK--WMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFR--SWMKCE 171 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~--~W~~~~ 171 (390)
.+..+|+......+.++|+.+.+ |...... . ......-.+..+++||+-.... .+++||..++ .|+.-.
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~---~~~~~~~~~~~~G~i~~g~~~g---~~y~ld~~~G~~~W~~~~ 139 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-A---VAQLSGPILGSDGKIYVGSWDG---KLYALDASTGTLVWSRNV 139 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcC-c---ceeccCceEEeCCeEEEecccc---eEEEEECCCCcEEEEEec
Confidence 36777776445578999999775 8543321 0 0000111233367777655432 7899999655 476543
Q ss_pred CCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCC-CCCCcCceEEEECCEEEEEecccCCCc
Q 016421 172 GMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSM-HSPRRLCSGFFMDGKFYVIGGMSSPTV 248 (390)
Q Consensus 172 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~ 248 (390)
... ++..-..+..++.+|+.- ....+..+|..+++ |+.-.+. ...+...+.+..++.+|+-... .
T Consensus 140 ~~~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~----~ 207 (370)
T COG1520 140 GGS-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG----Y 207 (370)
T ss_pred CCC-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC----C
Confidence 331 222223344466666652 13457888888664 8753322 2222223333567788875321 1
Q ss_pred cCceEEEEeCCCC--ceEEccCCCCCCC---CcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCC--ceEEccCCCcccc
Q 016421 249 SLTCGEEFDLETR--KWRKIEGMYPNVN---RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKN--TWDVLGRLPVRAD 321 (390)
Q Consensus 249 ~~~~v~~yd~~~~--~W~~~~~~~~~~~---~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~--~W~~v~~~~~~~~ 321 (390)
...++.+|+.++ .|..-...+.... ..+......+..++.+|.. ...+.+.++|..+. .|+.-..+.....
T Consensus 208 -~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-~~~g~~~~l~~~~G~~~W~~~~~~~~~~~ 285 (370)
T COG1520 208 -DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG-SYGGKLLCLDADTGELIWSFPAGGSVQGS 285 (370)
T ss_pred -cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEE-ecCCeEEEEEcCCCceEEEEecccEeccC
Confidence 225788999766 4774322221110 0011222344455555333 33456888887766 4887543221111
Q ss_pred CCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 322 LSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 322 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
. .+......-+|++|+........ ....+++++...
T Consensus 286 ~--~~~~~~~~~dG~v~~~~~~~~~~-~~~~~~~~~~~~ 321 (370)
T COG1520 286 G--LYTTPVAGADGKVYIGFTDNDGR-GSGSLYALADVP 321 (370)
T ss_pred C--eeEEeecCCCccEEEEEeccccc-cccceEEEeccC
Confidence 1 11122222377888776433211 223466777633
No 128
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.77 E-value=38 Score=34.30 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=75.2
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEc
Q 016421 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI 266 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 266 (390)
|.=..+|+.. +-.+.+|+-++.+...-..-...+.......-||.+.+.|+.++. |-+||..+......
T Consensus 319 GDWiA~g~~k-----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK------VKvWn~~SgfC~vT 387 (893)
T KOG0291|consen 319 GDWIAFGCSK-----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK------VKVWNTQSGFCFVT 387 (893)
T ss_pred CCEEEEcCCc-----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc------EEEEeccCceEEEE
Confidence 5555565532 345777876666654443333344332222348888888876642 45577766543221
Q ss_pred cCCCCCCCCcCCCCCEE-EEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeC--CEEEEEcCC
Q 016421 267 EGMYPNVNRAAQAPPLV-AVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACG--NELLVVGGQ 343 (390)
Q Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~--~~lyv~GG~ 343 (390)
-.-+.. ...++ ....|+..+-...-+.|-.||...-.=-+--..|.+.. .++++.+ |.|++.|+.
T Consensus 388 FteHts------~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q------fscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 388 FTEHTS------GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ------FSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred eccCCC------ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCcee------eeEEEEcCCCCEEEeecc
Confidence 111110 01111 12344544444444678888877644222112233322 3455566 888888886
Q ss_pred CCCCCCeEEEeeecCCC
Q 016421 344 RGPEGENVVLNSWCPKS 360 (390)
Q Consensus 344 ~~~~~~~~~i~~y~~~~ 360 (390)
+ +-+|++|+.++
T Consensus 456 d-----~F~IfvWS~qT 467 (893)
T KOG0291|consen 456 D-----SFEIFVWSVQT 467 (893)
T ss_pred c-----eEEEEEEEeec
Confidence 5 23577777766
No 129
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=86.57 E-value=20 Score=33.54 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=60.7
Q ss_pred CCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCc-ccc-CCCcceeEEEEeCCEE
Q 016421 260 TRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPV-RAD-LSNGWGLAFKACGNEL 337 (390)
Q Consensus 260 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~-~~~-~~~~~~~~~~~~~~~l 337 (390)
.+.|+.+..+.. ..-.++.++|++|+++. .+.++.+|.+- +=.+++.... ... ...+....+|...|.|
T Consensus 189 ~~~Wt~l~~~~~-------~~~DIi~~kGkfYAvD~-~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQMGY-------HFSDIIVHKGQTYALDS-IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccCCCc-------eeeEEEEECCEEEEEcC-CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEE
Confidence 489999975322 23358999999999964 46788887432 1122221110 000 0000113477888999
Q ss_pred EEEcCCCCCC-----------CCeEEEeeecCCCCCCCCCCceEEecccCccCeEE
Q 016421 338 LVVGGQRGPE-----------GENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFV 382 (390)
Q Consensus 338 yv~GG~~~~~-----------~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~ 382 (390)
+++....... .....+.+|..+. ...+|.++..+....-|.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~----~~~~WveV~sLgd~aLFl 311 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD----ELAKWMEVKTLGDNAFVM 311 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcC----CCCcEEEecccCCeEEEE
Confidence 9998743211 1123344553332 226899999986444333
No 130
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.54 E-value=25 Score=31.93 Aligned_cols=236 Identities=16% Similarity=0.185 Sum_probs=95.4
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCC-CCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEG-MNHP 176 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~-~~~~ 176 (390)
..-|++|....++.=+---.+|.....-.......+. ..+...++..|+.|.. ..++.-.-.-.+|.+++. .+.+
T Consensus 28 ~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l-~~I~f~~~~g~ivG~~---g~ll~T~DgG~tW~~v~l~~~lp 103 (302)
T PF14870_consen 28 NHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHL-NSISFDGNEGWIVGEP---GLLLHTTDGGKTWERVPLSSKLP 103 (302)
T ss_dssp S-EEEEETTTEEEEESSTTSS-EE-----S-----EE-EEEEEETTEEEEEEET---TEEEEESSTTSS-EE----TT-S
T ss_pred CEEEEEecCCEEEEECCCCccccccccCCCccceeeE-EEEEecCCceEEEcCC---ceEEEecCCCCCcEEeecCCCCC
Confidence 3445555444333333334578876532221111111 1233356778887642 233444444568998753 2333
Q ss_pred Ccceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE-ECCEEEEEecccCCCccCceEE
Q 016421 177 RCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGE 254 (390)
Q Consensus 177 r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 254 (390)
-..+.+..+ ++.+++++.. ..++.=.-.-.+|+.+..-...- -..+.. -+|++++++... +.+.
T Consensus 104 gs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~gs-~~~~~r~~dG~~vavs~~G------~~~~ 169 (302)
T PF14870_consen 104 GSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETSGS-INDITRSSDGRYVAVSSRG------NFYS 169 (302)
T ss_dssp S-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS------SEEE
T ss_pred CCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcce-eEeEEECCCCcEEEEECcc------cEEE
Confidence 333444443 5566666532 12333333445898864322221 112222 366766665322 1223
Q ss_pred EEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEe--CCCCceEEccCCCccccCCCccee-EEE
Q 016421 255 EFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYD--KLKNTWDVLGRLPVRADLSNGWGL-AFK 331 (390)
Q Consensus 255 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd--~~~~~W~~v~~~~~~~~~~~~~~~-~~~ 331 (390)
..|+....|......... |-......-++.|+++. .-+.+..=| -...+|.+-. .|.... +++. .++
T Consensus 170 s~~~G~~~w~~~~r~~~~-----riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~-~~~~~~---~~~~ld~a 239 (302)
T PF14870_consen 170 SWDPGQTTWQPHNRNSSR-----RIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI-IPIKTN---GYGILDLA 239 (302)
T ss_dssp EE-TT-SS-EEEE--SSS------EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B--TTSS-----S-EEEEE
T ss_pred EecCCCccceEEccCccc-----eehhceecCCCCEEEEe-CCcEEEEccCCCCcccccccc-CCcccC---ceeeEEEE
Confidence 478888889877654331 11112233467888875 334455545 3445788822 122111 2332 222
Q ss_pred Ee-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecc
Q 016421 332 AC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAE 374 (390)
Q Consensus 332 ~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~ 374 (390)
.. ++.+++.||.. ...+..+.+ .+|++...
T Consensus 240 ~~~~~~~wa~gg~G--------~l~~S~DgG-----ktW~~~~~ 270 (302)
T PF14870_consen 240 YRPPNEIWAVGGSG--------TLLVSTDGG-----KTWQKDRV 270 (302)
T ss_dssp ESSSS-EEEEESTT---------EEEESSTT-----SS-EE-GG
T ss_pred ecCCCCEEEEeCCc--------cEEEeCCCC-----ccceECcc
Confidence 22 57899999854 224445443 68998864
No 131
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=86.18 E-value=11 Score=34.56 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCEEEEEecc---cCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECC---EEEEEecCCCeEEEEeCCC
Q 016421 234 DGKFYVIGGM---SSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDN---QLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 234 ~~~iyv~GG~---~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g---~l~v~gg~~~~v~~yd~~~ 307 (390)
.++|||+--. .........||+||+++.+=-..-++..+. ..+.+.++ .||.+....+.+.+||..+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~-------~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPI-------DSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEE-------SEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCcc-------ceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 6799988521 123345678999999998633221221110 02444433 4777766668899999998
Q ss_pred Cc
Q 016421 308 NT 309 (390)
Q Consensus 308 ~~ 309 (390)
++
T Consensus 322 Gk 323 (342)
T PF06433_consen 322 GK 323 (342)
T ss_dssp --
T ss_pred Cc
Confidence 75
No 132
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=86.16 E-value=22 Score=30.95 Aligned_cols=194 Identities=11% Similarity=0.040 Sum_probs=95.0
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 140 AVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
+.+++.+..+|. ..+..||..++.=..+...-.++....++.+ +++-...||.++. +.++|...-.-..
T Consensus 49 Tpdk~~LAaa~~---qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt------~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 49 TPDKKDLAAAGN---QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT------VKIWDLRSLSCQR 119 (311)
T ss_pred cCCcchhhhccC---CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce------EEEEeccCcccch
Confidence 335555666653 4788999887654332222233333333333 5666666775543 6677776633333
Q ss_pred cCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCC
Q 016421 218 LPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLT 297 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~ 297 (390)
.-..+.+. -..+..-+.--++.|.. ...|.++|+.++...... +|..... -....+.-+|.+.+..-..
T Consensus 120 ~~~~~spV--n~vvlhpnQteLis~dq-----sg~irvWDl~~~~c~~~l-iPe~~~~---i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 120 NYQHNSPV--NTVVLHPNQTELISGDQ-----SGNIRVWDLGENSCTHEL-IPEDDTS---IQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred hccCCCCc--ceEEecCCcceEEeecC-----CCcEEEEEccCCcccccc-CCCCCcc---eeeEEEcCCCcEEEEecCC
Confidence 22222221 12233333333333332 335888999999876433 2221110 0112333466666665566
Q ss_pred CeEEEEeCCCCce-EEccCCCccccCCCcceeEEEE-eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLKNTW-DVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W-~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+++|+.-+.+- +.+.++.. ...+.+++..+.. -+++.++..+.+. .+++|+.++
T Consensus 189 G~cyvW~l~~~~~~s~l~P~~k-~~ah~~~il~C~lSPd~k~lat~ssdk------tv~iwn~~~ 246 (311)
T KOG0315|consen 189 GNCYVWRLLNHQTASELEPVHK-FQAHNGHILRCLLSPDVKYLATCSSDK------TVKIWNTDD 246 (311)
T ss_pred ccEEEEEccCCCccccceEhhh-eecccceEEEEEECCCCcEEEeecCCc------eEEEEecCC
Confidence 7888888766432 12222111 1122233333322 2566666665442 466777765
No 133
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.62 E-value=21 Score=30.26 Aligned_cols=162 Identities=17% Similarity=0.012 Sum_probs=91.3
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC-cceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016421 138 SLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR-CLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
....++++|..-|....+.+.++|..+.+=..-..++.++ ..-+.+.+++.+|..-=.. .-.+.||.. +.+
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~--t~~ 122 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE------GVAFKYDAD--TLE 122 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc------ceeEEEChH--Hhh
Confidence 3455778888777777788999999977632222333233 3447788899999884222 225677754 444
Q ss_pred EcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE---Ecc--CCCCCCCCcCCCCCEEEEECCEEE
Q 016421 217 MLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR---KIE--GMYPNVNRAAQAPPLVAVVDNQLY 291 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~---~~~--~~~~~~~~~~~~~~~~~~~~g~l~ 291 (390)
.+...+.+-.+.+.+.-+.++..--| ...+..-||++-.=. .+. ..|.. .-.-+-.++|.+|
T Consensus 123 ~lg~~~y~GeGWgLt~d~~~LimsdG-------satL~frdP~tfa~~~~v~VT~~g~pv~------~LNELE~VdG~ly 189 (262)
T COG3823 123 ELGRFSYEGEGWGLTSDDKNLIMSDG-------SATLQFRDPKTFAELDTVQVTDDGVPVS------KLNELEWVDGELY 189 (262)
T ss_pred hhcccccCCcceeeecCCcceEeeCC-------ceEEEecCHHHhhhcceEEEEECCeecc------cccceeeeccEEE
Confidence 55555555445555544555444322 223344466542211 111 11110 0011344566666
Q ss_pred EEecCCCeEEEEeCCCC---ceEEccCCCccc
Q 016421 292 AVEYLTNMVKKYDKLKN---TWDVLGRLPVRA 320 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~---~W~~v~~~~~~~ 320 (390)
.---....+.+-||+++ .|..++.++...
T Consensus 190 ANVw~t~~I~rI~p~sGrV~~widlS~L~~~~ 221 (262)
T COG3823 190 ANVWQTTRIARIDPDSGRVVAWIDLSGLLKEL 221 (262)
T ss_pred EeeeeecceEEEcCCCCcEEEEEEccCCchhc
Confidence 54445678889999998 499988776543
No 134
>PTZ00421 coronin; Provisional
Probab=85.57 E-value=38 Score=33.20 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEee-----cCCCCCCCcceeeeee---CCEEEEEeccCCCCCccceEEEEECCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMK-----CEGMNHPRCLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTG 213 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~-----~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 213 (390)
++.+++.|+. +..+.+||..+..... +..+.........+.+ ++.+++.||.+ ..+.++|..++
T Consensus 87 d~~~LaSgS~--DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D------gtVrIWDl~tg 158 (493)
T PTZ00421 87 DPQKLFTASE--DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD------MVVNVWDVERG 158 (493)
T ss_pred CCCEEEEEeC--CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC------CEEEEEECCCC
Confidence 3455565653 4577888876543211 1111111111122222 23566666654 34788998877
Q ss_pred cEEEcCCCCCCCcCceEE--EECCEEEEEecccCCCccCceEEEEeCCCCc
Q 016421 214 RWEMLPSMHSPRRLCSGF--FMDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 214 ~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
.-... +.........+ ..++.+.+.|+.++ .+..||+.+++
T Consensus 159 ~~~~~--l~~h~~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 159 KAVEV--IKCHSDQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred eEEEE--EcCCCCceEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 53221 11111111122 23677777766543 46779998765
No 135
>PRK01742 tolB translocation protein TolB; Provisional
Probab=85.45 E-value=36 Score=32.70 Aligned_cols=140 Identities=13% Similarity=0.009 Sum_probs=68.8
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCC-EEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGS-IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 232 (390)
...++++|..+++-+.+...+..... ....-++ +|++....++ ..+++.+|..++..+.+..-... .......
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~~-~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS 300 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNGA-PAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSGAGN-NTEPSWS 300 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccCc-eeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence 34688889888766555443322111 1112244 4444432222 23588889988877766432211 1111122
Q ss_pred ECCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEecCCCeEEEEeCCCCce
Q 016421 233 MDGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 233 ~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg~~~~v~~yd~~~~~W 310 (390)
-+|+ |++.....+ ...++.+|..+..-..+.. . . ..+ ...-+|+ |++.++ ..+..+|..++++
T Consensus 301 pDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~-~------~-~~~-~~SpDG~~ia~~~~--~~i~~~Dl~~g~~ 365 (429)
T PRK01742 301 PDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG-R------G-YSA-QISADGKTLVMING--DNVVKQDLTSGST 365 (429)
T ss_pred CCCCEEEEEECCCC----CceEEEEECCCCCeEEecC-C------C-CCc-cCCCCCCEEEEEcC--CCEEEEECCCCCe
Confidence 3554 554433222 2356667766554333211 0 0 111 1223444 444433 5677899999988
Q ss_pred EEcc
Q 016421 311 DVLG 314 (390)
Q Consensus 311 ~~v~ 314 (390)
..+.
T Consensus 366 ~~lt 369 (429)
T PRK01742 366 EVLS 369 (429)
T ss_pred EEec
Confidence 8764
No 136
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=84.77 E-value=38 Score=32.41 Aligned_cols=207 Identities=12% Similarity=0.044 Sum_probs=106.1
Q ss_pred CCchhhhhhcCccccEEEEEeCCCeeEEEecCCCceeeCCC-CCCCcccCC---------CCeeEEEeCCEEEEEccccc
Q 016421 84 GYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPK-IPCDECFNH---------ADKESLAVGSELLVFGRELF 153 (390)
Q Consensus 84 ~~~~~~r~~~~~~~~~l~~~~~~~~~~~~d~~~~~W~~l~~-~p~~~~~~~---------~~~~~~~~~~~iy~~Gg~~~ 153 (390)
..|.....++.-++..=.+|....+++.|||.+++-+++.- +|..+.... ..-.+++.++.|-.+.
T Consensus 264 TnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS---- 339 (668)
T COG4946 264 TNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS---- 339 (668)
T ss_pred CCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe----
Confidence 33444334444556666667667889999999998876632 233211110 0001222344443332
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
....+++++..+---+++....-| ..-...+++-.++|-.+++ .+.+||..++.-+.+.. +..+.....+.-
T Consensus 340 RGkaFi~~~~~~~~iqv~~~~~Vr--Y~r~~~~~e~~vigt~dgD-----~l~iyd~~~~e~kr~e~-~lg~I~av~vs~ 411 (668)
T COG4946 340 RGKAFIMRPWDGYSIQVGKKGGVR--YRRIQVDPEGDVIGTNDGD-----KLGIYDKDGGEVKRIEK-DLGNIEAVKVSP 411 (668)
T ss_pred cCcEEEECCCCCeeEEcCCCCceE--EEEEccCCcceEEeccCCc-----eEEEEecCCceEEEeeC-CccceEEEEEcC
Confidence 236677776555444444322222 2233345667788776653 48899999998766543 222222222334
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEe----cCCCeEEEEeCCCCc
Q 016421 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVE----YLTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~g----g~~~~v~~yd~~~~~ 309 (390)
+|+..+++.. .-.++.+|+.++.=+.+..-.... -.-..-.-+++.+..+ -..+.+..||+++++
T Consensus 412 dGK~~vvaNd------r~el~vididngnv~~idkS~~~l-----Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 412 DGKKVVVAND------RFELWVIDIDNGNVRLIDKSEYGL-----ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred CCcEEEEEcC------ceEEEEEEecCCCeeEecccccce-----eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 6675555432 345788888888766554311100 0000111234444442 245667777777765
Q ss_pred eEEc
Q 016421 310 WDVL 313 (390)
Q Consensus 310 W~~v 313 (390)
--.+
T Consensus 481 iy~v 484 (668)
T COG4946 481 IYDV 484 (668)
T ss_pred EEEe
Confidence 4444
No 137
>PLN00181 protein SPA1-RELATED; Provisional
Probab=84.45 E-value=57 Score=34.22 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=69.6
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee--eCCEEEEEeccCCCCCccceEEEEECCCCc--EEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS--LGSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 217 (390)
++.+++.|+. +..+.+||..+..-.. .+........+.. -++..++.|+.+ ..+.+||..+.. ...
T Consensus 587 ~~~~L~Sgs~--Dg~v~iWd~~~~~~~~--~~~~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 587 DPTLLASGSD--DGSVKLWSINQGVSIG--TIKTKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCT 656 (793)
T ss_pred CCCEEEEEcC--CCEEEEEECCCCcEEE--EEecCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceE
Confidence 3456666653 3578888887654211 1111111111111 246677777654 348889987543 111
Q ss_pred cCCCCCCCcCc-eEEEECCEEEEEecccCCCccCceEEEEeCCCC----ceEEccCCCCCCCCcCCCCCEEEEECCEEEE
Q 016421 218 LPSMHSPRRLC-SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR----KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYA 292 (390)
Q Consensus 218 ~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 292 (390)
+ ....... .....++..++.|+.++ .+-.||+.+. .|..+..+.... ..........++.+++
T Consensus 657 ~---~~h~~~V~~v~f~~~~~lvs~s~D~------~ikiWd~~~~~~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~la 724 (793)
T PLN00181 657 M---IGHSKTVSYVRFVDSSTLVSSSTDN------TLKLWDLSMSISGINETPLHSFMGHT---NVKNFVGLSVSDGYIA 724 (793)
T ss_pred e---cCCCCCEEEEEEeCCCEEEEEECCC------EEEEEeCCCCccccCCcceEEEcCCC---CCeeEEEEcCCCCEEE
Confidence 1 1111111 22234666666665432 3566777643 233222221110 0001112234567777
Q ss_pred EecCCCeEEEEeCCCC
Q 016421 293 VEYLTNMVKKYDKLKN 308 (390)
Q Consensus 293 ~gg~~~~v~~yd~~~~ 308 (390)
.|+..+.+.+|+....
T Consensus 725 sgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 725 TGSETNEVFVYHKAFP 740 (793)
T ss_pred EEeCCCEEEEEECCCC
Confidence 7877888999987544
No 138
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=84.38 E-value=67 Score=34.96 Aligned_cols=243 Identities=14% Similarity=0.081 Sum_probs=122.0
Q ss_pred ccEEEEEe-CCCeeEEEecCCCceeeCCCCCCC-----c--ccCCCCeeEEEe---CCEEEEEcccccCCeEEEEECCCC
Q 016421 97 EHWVYLVC-DPRGWEAFDPMKKKWMALPKIPCD-----E--CFNHADKESLAV---GSELLVFGRELFDFAIWKYSLVFR 165 (390)
Q Consensus 97 ~~~l~~~~-~~~~~~~~d~~~~~W~~l~~~p~~-----~--~~~~~~~~~~~~---~~~iy~~Gg~~~~~~~~~yd~~t~ 165 (390)
...+|+.. +...+..+|+....-..+...... . .........+++ ++.||+.-.. .+.+.++|+.++
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~--n~~Ir~id~~~~ 656 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE--NHALREIDFVNE 656 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC--CceEEEEecCCC
Confidence 35567664 456788888865432222221000 0 000001122333 4568886432 356788888776
Q ss_pred cEeecCCC-------C--------CCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCC-------
Q 016421 166 SWMKCEGM-------N--------HPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM------- 221 (390)
Q Consensus 166 ~W~~~~~~-------~--------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~------- 221 (390)
.-+.+... . .-...+.+++- ++.+|+.... .+.+++||+.++....+..-
T Consensus 657 ~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------~~~I~v~d~~~g~v~~~~G~G~~~~~~ 730 (1057)
T PLN02919 657 TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------QHQIWEYNISDGVTRVFSGDGYERNLN 730 (1057)
T ss_pred EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------CCeEEEEECCCCeEEEEecCCccccCC
Confidence 65443210 0 00111233332 6788987532 34588899877765432110
Q ss_pred ---CC--CCcCc-eEEEE-C-CEEEEEecccCCCccCceEEEEeCCCCceEEccC----CCC-------CCCC----cCC
Q 016421 222 ---HS--PRRLC-SGFFM-D-GKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEG----MYP-------NVNR----AAQ 278 (390)
Q Consensus 222 ---~~--~r~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~-------~~~~----~~~ 278 (390)
.. ..... ..+.. + +.||+.-.. .+.|.+||+.++.-..+.. .+. .... .-.
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 00 00112 22322 3 459987432 3568889988765432210 000 0000 000
Q ss_pred CCCEEE-EECCEEEEEecCCCeEEEEeCCCCceEEccCCCcc----------ccCCCcceeEEEEeCCEEEEEcCCCCCC
Q 016421 279 APPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVR----------ADLSNGWGLAFKACGNELLVVGGQRGPE 347 (390)
Q Consensus 279 ~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~----------~~~~~~~~~~~~~~~~~lyv~GG~~~~~ 347 (390)
....++ .-+|.+|+.....+.|.+||+.++....+...... ..... .+. ++.-+|+|||....+.
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P-~GI-avd~dG~lyVaDt~Nn-- 880 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP-AGL-ALGENGRLFVADTNNS-- 880 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc-eEE-EEeCCCCEEEEECCCC--
Confidence 111233 34678999998889999999999887766532110 00000 112 2234678999876432
Q ss_pred CCeEEEeeecCCCC
Q 016421 348 GENVVLNSWCPKSG 361 (390)
Q Consensus 348 ~~~~~i~~y~~~~~ 361 (390)
.|.++|++++
T Consensus 881 ----~Irvid~~~~ 890 (1057)
T PLN02919 881 ----LIRYLDLNKG 890 (1057)
T ss_pred ----EEEEEECCCC
Confidence 5778888773
No 139
>smart00284 OLF Olfactomedin-like domains.
Probab=84.25 E-value=29 Score=30.60 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=86.4
Q ss_pred CCEEEEEeccCCCCCccceEEEEEC----CCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCC
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDS----TTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~----~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
++++|++.+... ....+..|.. ..+.+...-.+|.+-.+.+.++++|.+|.--. ....+.+||+.++
T Consensus 34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t~ 104 (255)
T smart00284 34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTTE 104 (255)
T ss_pred CceEEEEccccC---CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec------CCccEEEEECCCC
Confidence 478888866531 1345666643 33444333356776667778899999999532 2456899999999
Q ss_pred ceEEccCCCCCC----C---CcCCCCCEEEEECCEEEEEe---cCCC--eEEEEeCCCC----ceEEccCCCccccCCCc
Q 016421 262 KWRKIEGMYPNV----N---RAAQAPPLVAVVDNQLYAVE---YLTN--MVKKYDKLKN----TWDVLGRLPVRADLSNG 325 (390)
Q Consensus 262 ~W~~~~~~~~~~----~---~~~~~~~~~~~~~g~l~v~g---g~~~--~v~~yd~~~~----~W~~v~~~~~~~~~~~~ 325 (390)
+=.....+|... . ..+....-+++-.+-|+++= ...+ .|-+.|+.+- +|.. ..+.. .
T Consensus 105 ~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~-----s 177 (255)
T smart00284 105 TYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKR-----S 177 (255)
T ss_pred cEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcc-----c
Confidence 865444344311 0 01112234555566677772 2223 2346777663 5665 22221 1
Q ss_pred ceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 326 WGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 326 ~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+-++ .+=|.||++-... .....-.+.||..+
T Consensus 178 a~naF-mvCGvLY~~~s~~--~~~~~I~yayDt~t 209 (255)
T smart00284 178 ASNAF-MICGILYVTRSLG--SKGEKVFYAYDTNT 209 (255)
T ss_pred ccccE-EEeeEEEEEccCC--CCCcEEEEEEECCC
Confidence 22233 3347888885321 12333466799887
No 140
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=83.32 E-value=27 Score=34.18 Aligned_cols=109 Identities=15% Similarity=0.042 Sum_probs=56.3
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceE-
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR- 264 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~- 264 (390)
.-.||+.|- ..+++.++++.+.|-.-=....+-.++..+.--..+..+||.++ .|+.+|+.+..=.
T Consensus 145 scDly~~gs-------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g------~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 145 SCDLYLVGS-------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG------VVEFWDPRDKSRVG 211 (703)
T ss_pred CccEEEeec-------CcceEEEEccccccccccccccccceeeeecCccceEEecccCc------eEEEecchhhhhhe
Confidence 446777653 35699999999998431111111111111111235666676543 4788888876432
Q ss_pred Ec------cCCCCCCCCcCCCCCEEEEECCEE-EEEecCCCeEEEEeCCCCc
Q 016421 265 KI------EGMYPNVNRAAQAPPLVAVVDNQL-YAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 265 ~~------~~~~~~~~~~~~~~~~~~~~~g~l-~v~gg~~~~v~~yd~~~~~ 309 (390)
.+ .+.|.... .....++..-++.| +.+|-..+.+++||..+.+
T Consensus 212 ~l~~~~~v~s~pg~~~--~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDA--APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eeecccccCCCccccc--cCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 11 11222111 11222333445344 4456677889999987654
No 141
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=82.62 E-value=28 Score=29.24 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=36.5
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEE-----c----cCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeec
Q 016421 287 DNQLYAVEYLTNMVKKYDKLKNTWDV-----L----GRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWC 357 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~W~~-----v----~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~ 357 (390)
++++|++.| +..++||...++-.. + ..+|... -+++...++++|++-|. ..+.||
T Consensus 110 ~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~i------daa~~~~~~~~yfF~g~--------~y~~~d 173 (194)
T cd00094 110 NGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKV------DAAFRWLDGYYYFFKGD--------QYWRFD 173 (194)
T ss_pred CCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcCCCc------ceeEEeCCCcEEEEECC--------EEEEEe
Confidence 689999966 678899876654321 1 1122211 13333334899999985 378888
Q ss_pred CCC
Q 016421 358 PKS 360 (390)
Q Consensus 358 ~~~ 360 (390)
..+
T Consensus 174 ~~~ 176 (194)
T cd00094 174 PRS 176 (194)
T ss_pred Ccc
Confidence 876
No 142
>PRK02889 tolB translocation protein TolB; Provisional
Probab=82.06 E-value=49 Score=31.72 Aligned_cols=146 Identities=10% Similarity=-0.013 Sum_probs=74.8
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++++|..+++-..+...+..........-+.+|++....++ ..+++.+|..++..+.+..-... .......-
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSp 293 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSGI-DTEPFFSP 293 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCCC-CcCeEEcC
Confidence 45799999988876555443322111111112345555433322 35788999888776666432211 11112223
Q ss_pred CCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEecC--CCeEEEEeCCCCc
Q 016421 234 DGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEYL--TNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg~--~~~v~~yd~~~~~ 309 (390)
+|+ |++.....+ ...++.+|..++..+.+..... .. ..+ ...-+|+ |+..... ...++.+|..+++
T Consensus 294 DG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g~-~~----~~~-~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 294 DGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTGS-YN----TSP-RISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CCCEEEEEecCCC----CcEEEEEECCCCceEEEecCCC-Cc----Cce-EECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 554 554432211 2457888888777766542111 00 111 2233454 4433322 2368999999888
Q ss_pred eEEcc
Q 016421 310 WDVLG 314 (390)
Q Consensus 310 W~~v~ 314 (390)
...+.
T Consensus 364 ~~~lt 368 (427)
T PRK02889 364 VTALT 368 (427)
T ss_pred eEEcc
Confidence 77765
No 143
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.64 E-value=34 Score=29.59 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=79.2
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...+..+||..+.--+.-.-...-..-...+.++.-++.||-+ ..+.++|..|++=..- ....-..-.++.+
T Consensus 38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~f 109 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD------KAVQVWDVNTGKVDRR--FRGHLAQVNTVRF 109 (307)
T ss_pred CceEEeecccccceeeeecCCCceeeeccccccccccccCCCC------ceEEEEEcccCeeeee--cccccceeeEEEe
Confidence 3567788888765433222111111112334455555555532 4588999998863211 1111111223344
Q ss_pred CC--EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCce
Q 016421 234 DG--KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 234 ~~--~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
|. .+.+-|+.+ .++..+|-.++...+++.+.... -+...+.+.+..++.|..-+.+..||+..++-
T Consensus 110 NeesSVv~SgsfD------~s~r~wDCRS~s~ePiQildea~-----D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 110 NEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDEAK-----DGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred cCcceEEEecccc------ceeEEEEcccCCCCccchhhhhc-----CceeEEEecccEEEeeccCCcEEEEEeeccee
Confidence 43 455555543 35677899998888887766632 23346667788888887778999999877653
No 144
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=80.76 E-value=33 Score=28.81 Aligned_cols=148 Identities=13% Similarity=0.072 Sum_probs=72.3
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCCc--Eeec----CCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEE
Q 016421 138 SLAVGSELLVFGRELFDFAIWKYSLVFRS--WMKC----EGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYD 209 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~--W~~~----~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd 209 (390)
++...+.+|+|-|. .+++++..... -+.+ +.+|.. .. ++... ++++|+|-| +..++||
T Consensus 12 ~~~~~g~~y~FkG~----~~w~~~~~~~~~~p~~I~~~w~~~p~~-ID-Aa~~~~~~~~~yfFkg--------~~yw~~~ 77 (194)
T cd00094 12 VTTLRGELYFFKGR----YFWRLSPGKPPGSPFLISSFWPSLPSP-VD-AAFERPDTGKIYFFKG--------DKYWVYT 77 (194)
T ss_pred EEEeCCEEEEEeCC----EEEEEeCCCCCCCCeEhhhhCCCCCCC-cc-EEEEECCCCEEEEECC--------CEEEEEc
Confidence 34456889998763 66777765211 1111 112211 11 22222 389999955 2477777
Q ss_pred CCCCcE---EEcCCCCCCC--cCc-eEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCC--CCCcCCC
Q 016421 210 STTGRW---EMLPSMHSPR--RLC-SGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPN--VNRAAQA 279 (390)
Q Consensus 210 ~~t~~W---~~~~~~~~~r--~~~-~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--~~~~~~~ 279 (390)
..+..+ +.+.....+. ... ++... ++++|++.|. ..++||..+++-..--+-+.. ....+..
T Consensus 78 ~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~ 149 (194)
T cd00094 78 GKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIETDFPGVPDK 149 (194)
T ss_pred CcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCcchhhcCCCcCCC
Confidence 654222 1111111111 111 22223 6899999653 467788765543211000000 0000111
Q ss_pred CCEEEEE-CCEEEEEecCCCeEEEEeCCCCc
Q 016421 280 PPLVAVV-DNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 280 ~~~~~~~-~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
.-++... +|++|++-| ...++||..+++
T Consensus 150 idaa~~~~~~~~yfF~g--~~y~~~d~~~~~ 178 (194)
T cd00094 150 VDAAFRWLDGYYYFFKG--DQYWRFDPRSKE 178 (194)
T ss_pred cceeEEeCCCcEEEEEC--CEEEEEeCccce
Confidence 1123333 488999966 589999988766
No 145
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.55 E-value=63 Score=31.36 Aligned_cols=184 Identities=18% Similarity=0.202 Sum_probs=92.2
Q ss_pred eCCEEEEEcccccCCeEEEEECCCC-c-EeecCCCCCCCcceeeee-eCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFR-S-WMKCEGMNHPRCLFGSGS-LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~-~-W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
.++.+.+-|. .+..+.+||...+ . -+.+....... ++++. -.+.+++.|+.++ .+.++|..+++-..
T Consensus 213 ~d~~~l~s~s--~D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 213 PDGSYLLSGS--DDKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVR 282 (456)
T ss_pred CCCcEEEEec--CCceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCCC------cEEEEeccCCeEEE
Confidence 3455444333 3457788888433 2 23333323333 22222 2457888888654 48889998866544
Q ss_pred cCCCCCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceE---EccCCCCCCCCcCCCCCEEEEECCEEEE
Q 016421 218 LPSMHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR---KIEGMYPNVNRAAQAPPLVAVVDNQLYA 292 (390)
Q Consensus 218 ~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~---~~~~~~~~~~~~~~~~~~~~~~~g~l~v 292 (390)
. +.......+++. -++.+++.+..+ ..+.+||..+..-. .+...... .....+....+..|+
T Consensus 283 ~--l~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 283 K--LKGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGSKLCLKLLSGAENS-----APVTSVQFSPNGKYL 349 (456)
T ss_pred e--eeccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCceeeeecccCCCCC-----CceeEEEECCCCcEE
Confidence 3 222222233333 367777776543 34677999987743 22221111 001123332333444
Q ss_pred E-ecCCCeEEEEeCCCCc----eEEccCCCccccCCCcceeEEE-EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 293 V-EYLTNMVKKYDKLKNT----WDVLGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 293 ~-gg~~~~v~~yd~~~~~----W~~v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+ +..-+.+..||..... |...... .. +....+ .-+++..+.|..+. .|++||+++
T Consensus 350 l~~~~d~~~~~w~l~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~i~sg~~d~------~v~~~~~~s 410 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSGKSVGTYTGHSNL---VR----CIFSPTLSTGGKLIYSGSEDG------SVYVWDSSS 410 (456)
T ss_pred EEecCCCeEEEEEccCCcceeeecccCCc---ce----eEecccccCCCCeEEEEeCCc------eEEEEeCCc
Confidence 4 4444577778877543 3322221 00 111122 33666666676553 588888876
No 146
>PRK03629 tolB translocation protein TolB; Provisional
Probab=79.53 E-value=60 Score=31.15 Aligned_cols=138 Identities=13% Similarity=0.017 Sum_probs=70.7
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..++++|..+++-+.+...+..-.. -...-+| +|++.....+ ...++.+|..+++..++....... ..
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~~-----~~- 291 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSNN-----TE- 291 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCCc-----Cc-
Confidence 4688999988887766554432111 1122355 4555433221 235889999998887765432210 11
Q ss_pred EEEEECCE-EEEEec--CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecC
Q 016421 282 LVAVVDNQ-LYAVEY--LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 282 ~~~~~~g~-l~v~gg--~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~ 358 (390)
....-+|+ |+.... ....++.+|..+.+-..+....... ........+..|+..+...+ ...++.+|+
T Consensus 292 ~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~-----~~~~~SpDG~~Ia~~~~~~g----~~~I~~~dl 362 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN-----QDADVSSDGKFMVMVSSNGG----QQHIAKQDL 362 (429)
T ss_pred eEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc-----cCEEECCCCCEEEEEEccCC----CceEEEEEC
Confidence 12233454 433322 2347888898887766654211110 01222122344544443322 235888888
Q ss_pred CC
Q 016421 359 KS 360 (390)
Q Consensus 359 ~~ 360 (390)
++
T Consensus 363 ~~ 364 (429)
T PRK03629 363 AT 364 (429)
T ss_pred CC
Confidence 77
No 147
>PRK04043 tolB translocation protein TolB; Provisional
Probab=78.21 E-value=66 Score=30.84 Aligned_cols=185 Identities=6% Similarity=-0.136 Sum_probs=98.3
Q ss_pred CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeC-CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeee
Q 016421 106 PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVG-SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGS 184 (390)
Q Consensus 106 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 184 (390)
...++.+|+.+.+=..+...+.... ...+..+ ..|++........+++.+|..++.++.+...+..-....-..
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~-----~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP 286 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLV-----VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE 286 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEE-----eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC
Confidence 4678888888776555544222110 0112333 355444332335689999999999988865443111112222
Q ss_pred eCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCE-EEEEecccCCC--ccCceEEEEeCCCC
Q 016421 185 LGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGK-FYVIGGMSSPT--VSLTCGEEFDLETR 261 (390)
Q Consensus 185 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~--~~~~~v~~yd~~~~ 261 (390)
-+.+||......+ ...++++|..++..+.+..-. .... ...-+|+ |.......... .....++.+|+.++
T Consensus 287 DG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 287 DDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHG--KNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEeCccCC--CcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 2456777654322 357999999999887764321 1222 2333554 44433222111 12357889999999
Q ss_pred ceEEccCCCCCCCCcCCCCCEEEEECCEEEEE-e--cCCCeEEEEeCCCCc
Q 016421 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAV-E--YLTNMVKKYDKLKNT 309 (390)
Q Consensus 262 ~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~-g--g~~~~v~~yd~~~~~ 309 (390)
.++.+..... . .. ....-+|+.+++ . +....+..++...+.
T Consensus 360 ~~~~LT~~~~--~----~~-p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 360 YIRRLTANGV--N----QF-PRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CeEECCCCCC--c----CC-eEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 9988865321 1 11 133445554443 2 223456666665543
No 148
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.62 E-value=54 Score=29.51 Aligned_cols=143 Identities=17% Similarity=0.101 Sum_probs=80.3
Q ss_pred CeEEEEECCCCc----EeecCCCCCCCcceee-e---eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCc
Q 016421 155 FAIWKYSLVFRS----WMKCEGMNHPRCLFGS-G---SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRR 226 (390)
Q Consensus 155 ~~~~~yd~~t~~----W~~~~~~~~~r~~~~~-~---~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 226 (390)
+.+..||..+++ |+.--.-+....+-.+ . -+++.|++.-+- +....-++..|..++.=+.+.+-|...
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~~g~~~~L~~~ps~K- 153 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD---GHANLGVYSLDRRTGKAEKLSSNPSLK- 153 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC---CcceeeeEEEcccCCceeeccCCCCcC-
Confidence 467889988876 5432111211111111 1 236788887432 223455888888898888876666552
Q ss_pred CceEEEECCEEEEEecccCCCccCceEEEEeCCCCce--EEccCCCC--CCCCcCCCCCEEEEECCEEEEEecCCCeEEE
Q 016421 227 LCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKW--RKIEGMYP--NVNRAAQAPPLVAVVDNQLYAVEYLTNMVKK 302 (390)
Q Consensus 227 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~--~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~ 302 (390)
....+|..+|-+ +........+.+||+.+++| .....-.. ....-.+...+++...+++|.+- .+.+.+
T Consensus 154 --G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~--rGGi~v 226 (339)
T PF09910_consen 154 --GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV--RGGIFV 226 (339)
T ss_pred --ceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEE--eccEEE
Confidence 233445555533 33233467899999999999 33321111 11111123345777888888882 235777
Q ss_pred EeCCCC
Q 016421 303 YDKLKN 308 (390)
Q Consensus 303 yd~~~~ 308 (390)
.||..+
T Consensus 227 gnP~~~ 232 (339)
T PF09910_consen 227 GNPYNG 232 (339)
T ss_pred eCCCCC
Confidence 888744
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=75.95 E-value=90 Score=31.24 Aligned_cols=105 Identities=13% Similarity=0.187 Sum_probs=60.6
Q ss_pred cceEEEEECCCC---cEEEcCCCCCCCcCceEEE--E-CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCC-CC
Q 016421 202 LKSAELYDSTTG---RWEMLPSMHSPRRLCSGFF--M-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPN-VN 274 (390)
Q Consensus 202 ~~~~~~yd~~t~---~W~~~~~~~~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-~~ 274 (390)
.+++.+|.++.. +=+.+.++|..+...+... . +++++++. ....+++.++..+.+..++.+.... .+
T Consensus 402 ~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~~ps~kel~~~~~~~~~ 475 (691)
T KOG2048|consen 402 VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELETPSFKELKSIQSQAKC 475 (691)
T ss_pred ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe------cccceeEEEEecCcchhhhhccccccCC
Confidence 344555554432 2344567777765544432 2 56777664 1345678888888888877665543 21
Q ss_pred CcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEcc
Q 016421 275 RAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 275 ~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
. .-+.......|+.|.+++ ..+.|.+||.++.+-..+.
T Consensus 476 ~-~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 476 P-SISRLVVSSDGNYIAAIS-TRGQIFVYNLETLESHLLK 513 (691)
T ss_pred C-cceeEEEcCCCCEEEEEe-ccceEEEEEcccceeecch
Confidence 1 111111222345555555 5678999999998876655
No 150
>PRK02889 tolB translocation protein TolB; Provisional
Probab=75.79 E-value=77 Score=30.39 Aligned_cols=183 Identities=9% Similarity=-0.038 Sum_probs=85.7
Q ss_pred CCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE
Q 016421 154 DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM 233 (390)
Q Consensus 154 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 233 (390)
...++..|......+.+......-..... .-+++.+++..... ....++++|..+++=+.+...+... ......-
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~w-SPDG~~la~~s~~~---~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SP 249 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAW-SPDGTKLAYVSFES---KKPVVYVHDLATGRRRVVANFKGSN-SAPAWSP 249 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceE-cCCCCEEEEEEccC---CCcEEEEEECCCCCEEEeecCCCCc-cceEECC
Confidence 35688888755444443322211111111 12443333333221 1346999999988765554433211 1112223
Q ss_pred CC-EEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCE-EEEEec--CCCeEEEEeCCCCc
Q 016421 234 DG-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQ-LYAVEY--LTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~-l~v~gg--~~~~v~~yd~~~~~ 309 (390)
+| +|++....++ ...++.+|..+....++...... ... ....-+|+ |+.... ....++.+|..++.
T Consensus 250 DG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-----~~~-~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 250 DGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSGI-----DTE-PFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCCC-----CcC-eEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 55 5554433322 35688899887776665432210 011 12333454 444332 23467888887777
Q ss_pred eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 310 WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 310 W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+.+..-. .. ....+....++.|+......+ ...|++||+.+
T Consensus 320 ~~~lt~~g--~~---~~~~~~SpDG~~Ia~~s~~~g----~~~I~v~d~~~ 361 (427)
T PRK02889 320 AQRVTFTG--SY---NTSPRISPDGKLLAYISRVGG----AFKLYVQDLAT 361 (427)
T ss_pred eEEEecCC--CC---cCceEECCCCCEEEEEEccCC----cEEEEEEECCC
Confidence 77664211 10 011222122444554443221 13588888776
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=74.80 E-value=62 Score=31.17 Aligned_cols=86 Identities=12% Similarity=-0.060 Sum_probs=46.7
Q ss_pred EEEEECCCCc----EEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEc--cCCCCCCCCcCC
Q 016421 205 AELYDSTTGR----WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI--EGMYPNVNRAAQ 278 (390)
Q Consensus 205 ~~~yd~~t~~----W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~~~~~~~ 278 (390)
|..||....+ |.+....|.. +.+....+..|++--|.+ ..++.||+....-+.. ...|. .
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~~--gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~~l~y~~Pl-----s- 254 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPCR--GICFSPSNEALLVSVGYD------KKINIYDIRSQASTDRLTYSHPL-----S- 254 (673)
T ss_pred EEEEeccCCCcccchhhhccCCcC--cceecCCccceEEEeccc------ceEEEeecccccccceeeecCCc-----c-
Confidence 6677765443 4443333332 222223477788876764 3577899886543321 11121 0
Q ss_pred CCCEEE-EECCEEEEEecCCCeEEEEeCCC
Q 016421 279 APPLVA-VVDNQLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 279 ~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~ 307 (390)
.++ .-+|.+.+.|-..+.++.||+..
T Consensus 255 ---tvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 255 ---TVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ---eeeecCCceEEEeecCCceEEEEeccc
Confidence 122 23466666676778888888754
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=74.13 E-value=80 Score=30.48 Aligned_cols=31 Identities=10% Similarity=0.006 Sum_probs=22.7
Q ss_pred CCEEEEECCEEEEEecCCCeEEEEeCCCCce
Q 016421 280 PPLVAVVDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 280 ~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
+.+....+..|++--|.-..+..||..+..=
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred cceecCCccceEEEecccceEEEeecccccc
Confidence 3345556777888778888999999876543
No 153
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=72.71 E-value=88 Score=29.64 Aligned_cols=115 Identities=9% Similarity=0.124 Sum_probs=64.5
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceE
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWR 264 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 264 (390)
++.||..|-.+ ..+-+||..+.. .+...|..-..-..+.+ ++-.|++-+.+. .+|..+|+...+
T Consensus 358 DgLifgtgt~d------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-----~~V~lwDLRKl~-- 422 (506)
T KOG0289|consen 358 DGLIFGTGTPD------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-----GSVKLWDLRKLK-- 422 (506)
T ss_pred CceEEeccCCC------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-----CeEEEEEehhhc--
Confidence 56666665433 347889988776 55566654333333433 333344444432 237778887655
Q ss_pred EccCCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCcc
Q 016421 265 KIEGMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVR 319 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~ 319 (390)
.+..++.+.. .......+ -|...+++|..-.|+.|+-.+.+|+++..++..
T Consensus 423 n~kt~~l~~~----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 423 NFKTIQLDEK----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred ccceeecccc----ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc
Confidence 2222222110 01112223 356666666666778888999999999877654
No 154
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=72.41 E-value=1.1e+02 Score=30.51 Aligned_cols=146 Identities=16% Similarity=0.227 Sum_probs=77.9
Q ss_pred eeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCC
Q 016421 183 GSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 183 ~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
+.+++.+.|.|.+++ .+-++|+.+++.-. .+...-..-....+++ ...+-|+.+ ..+.++|+.+.
T Consensus 337 v~~~~~~lvsgs~d~------~v~VW~~~~~~cl~--sl~gH~~~V~sl~~~~~~~~~Sgs~D------~~IkvWdl~~~ 402 (537)
T KOG0274|consen 337 VQLDEPLLVSGSYDG------TVKVWDPRTGKCLK--SLSGHTGRVYSLIVDSENRLLSGSLD------TTIKVWDLRTK 402 (537)
T ss_pred EEecCCEEEEEecCc------eEEEEEhhhceeee--eecCCcceEEEEEecCcceEEeeeec------cceEeecCCch
Confidence 344666666666543 47888888665432 1111111112224566 555555543 34667888776
Q ss_pred ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEc
Q 016421 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVG 341 (390)
Q Consensus 262 ~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~G 341 (390)
. ..+..+.... .......+.+++++-+...+.|..||.++++-.++..-+ .. .+..++..+...++..
T Consensus 403 ~-~c~~tl~~h~-----~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~-----~~v~~l~~~~~~il~s 470 (537)
T KOG0274|consen 403 R-KCIHTLQGHT-----SLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HV-----GGVSALALGKEEILCS 470 (537)
T ss_pred h-hhhhhhcCCc-----ccccccccccceeEeccccccEEEeecccCceeeeeccC-Cc-----ccEEEeecCcceEEEE
Confidence 4 2222222211 111122355666777777788999999998876654433 11 1133334445777777
Q ss_pred CCCCCCCCeEEEeeecCCC
Q 016421 342 GQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 342 G~~~~~~~~~~i~~y~~~~ 360 (390)
+.++ .+..||..+
T Consensus 471 ~~~~------~~~l~dl~~ 483 (537)
T KOG0274|consen 471 SDDG------SVKLWDLRS 483 (537)
T ss_pred ecCC------eeEEEeccc
Confidence 7654 466777665
No 155
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=72.10 E-value=74 Score=29.20 Aligned_cols=112 Identities=11% Similarity=0.128 Sum_probs=67.5
Q ss_pred CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEE
Q 016421 176 PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEE 255 (390)
Q Consensus 176 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 255 (390)
.|....++-++++.+|.... ..++-+++..|..... .+...+.+.+++.++|++.|-|..+ +++-.
T Consensus 319 HrAaVNvVdfd~kyIVsASg------DRTikvW~~st~efvR--tl~gHkRGIAClQYr~rlvVSGSSD------ntIRl 384 (499)
T KOG0281|consen 319 HRAAVNVVDFDDKYIVSASG------DRTIKVWSTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSD------NTIRL 384 (499)
T ss_pred hhhheeeeccccceEEEecC------CceEEEEeccceeeeh--hhhcccccceehhccCeEEEecCCC------ceEEE
Confidence 34444445567774443221 2456777776665533 3455566777788999998876543 45777
Q ss_pred EeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCC
Q 016421 256 FDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 256 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~ 308 (390)
+|++.+.--.+-.--... - -..-++++=.+-|++-+.+.+||..+.
T Consensus 385 wdi~~G~cLRvLeGHEeL---v----RciRFd~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 385 WDIECGACLRVLEGHEEL---V----RCIRFDNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred EeccccHHHHHHhchHHh---h----hheeecCceeeeccccceEEEEecccc
Confidence 888887654332111100 1 134467777788888888888887653
No 156
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=71.81 E-value=29 Score=33.88 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=58.5
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEE---
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM--- 217 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~--- 217 (390)
..||+.| ...++|++|...++|-. |+...-....++.+ -+.|+++||.++ .|+.+|+.+.+-..
T Consensus 146 cDly~~g---sg~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~g------~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 146 CDLYLVG---SGSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTEDG------VVEFWDPRDKSRVGTLD 214 (703)
T ss_pred ccEEEee---cCcceEEEEcccccccc--ccccccccceeeeecCccceEEecccCc------eEEEecchhhhhheeee
Confidence 4555555 24689999999998843 22221122222333 356788887543 48889988765322
Q ss_pred ----cCCCCCCCc--CceEEEE-CCEEEEEecccCCCccCceEEEEeCCCCceEE
Q 016421 218 ----LPSMHSPRR--LCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRK 265 (390)
Q Consensus 218 ----~~~~~~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~ 265 (390)
++..|..-. ..++..+ |+-|-+.-|... ..++.||+.+.+=..
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~-----G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST-----GSVLIYDLRASKPLL 264 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeeccC-----CcEEEEEcccCCcee
Confidence 122222211 1233334 435666555543 357889998866433
No 157
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=71.35 E-value=95 Score=29.46 Aligned_cols=143 Identities=13% Similarity=0.033 Sum_probs=78.7
Q ss_pred CeEEEEECCCC-----cEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCc---EE-EcCCCCCCC
Q 016421 155 FAIWKYSLVFR-----SWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR---WE-MLPSMHSPR 225 (390)
Q Consensus 155 ~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~-~~~~~~~~r 225 (390)
+.++..+.... .|..+.+ +..-....+...++.+|+.-..+. ....+..+++.... |. .+.+-....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCCCCce
Confidence 67888888775 6777644 122222334455889998865332 34567888887665 66 333222222
Q ss_pred cCceEEEECCEEEEEecccCCCccCceEEEEeCC-CCceEEccCCCCCCCCcCCCCCEEEEE-----CCEEEEE-ecC--
Q 016421 226 RLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLE-TRKWRKIEGMYPNVNRAAQAPPLVAVV-----DNQLYAV-EYL-- 296 (390)
Q Consensus 226 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-----~g~l~v~-gg~-- 296 (390)
.-..+...++.|++..-.+. ...+.+||+. +..-..++..... .+... .+.+++. .+.
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~~----~~~l~v~~~~~~~~~~~~~~p~~g---------~v~~~~~~~~~~~~~~~~ss~~~ 394 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYRENG----SSRLRVYDLDDGKESREIPLPEAG---------SVSGVSGDFDSDELRFSYSSFTT 394 (414)
T ss_dssp EEEEEEEETTEEEEEEEETT----EEEEEEEETT-TEEEEEEESSSSS---------EEEEEES-TT-SEEEEEEEETTE
T ss_pred eEEEEEEECCEEEEEEEECC----ccEEEEEECCCCcEEeeecCCcce---------EEeccCCCCCCCEEEEEEeCCCC
Confidence 22334456888888754432 4568889998 3333333322221 11111 2344443 442
Q ss_pred CCeEEEEeCCCCceEEcc
Q 016421 297 TNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~ 314 (390)
...++.||+.+++-+.+.
T Consensus 395 P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 395 PPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEEETTTTCEEEEE
T ss_pred CCEEEEEECCCCCEEEEE
Confidence 468999999999877653
No 158
>PRK13684 Ycf48-like protein; Provisional
Probab=70.67 E-value=89 Score=28.85 Aligned_cols=185 Identities=14% Similarity=0.034 Sum_probs=90.9
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEE-EECCCCcEEEcCCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAEL-YDSTTGRWEMLPSM 221 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~-yd~~t~~W~~~~~~ 221 (390)
+.+++.|. ...+++=+-.-.+|+.+.... .-..+.+....+..|++.|..+. ++. .|....+|+.+..
T Consensus 143 ~~~~~~g~---~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~~- 211 (334)
T PRK13684 143 GTAEMATN---VGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQR- 211 (334)
T ss_pred Ccceeeec---cceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCce------EEEEcCCCCCeEEEeeC-
Confidence 44555543 224555444567898875532 22334444444445555444331 222 2344457988754
Q ss_pred CCCCcCceEEE-ECCEEEEEecccCCCccCceEEEE--eCCCCceEEccCCCCCCCCcCCCCCEEEEE-CCEEEEEecCC
Q 016421 222 HSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEF--DLETRKWRKIEGMYPNVNRAAQAPPLVAVV-DNQLYAVEYLT 297 (390)
Q Consensus 222 ~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~g~l~v~gg~~ 297 (390)
+..+.-.+.+. -++.++++|... ...+ +-.-.+|+.+....... ......++.. ++.++++|..
T Consensus 212 ~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~~s~d~G~sW~~~~~~~~~~---~~~l~~v~~~~~~~~~~~G~~- 279 (334)
T PRK13684 212 NSSRRLQSMGFQPDGNLWMLARGG--------QIRFNDPDDLESWSKPIIPEITN---GYGYLDLAYRTPGEIWAGGGN- 279 (334)
T ss_pred CCcccceeeeEcCCCCEEEEecCC--------EEEEccCCCCCccccccCCcccc---ccceeeEEEcCCCCEEEEcCC-
Confidence 33333334443 367888886431 1223 12234898754321110 0011123322 6678888753
Q ss_pred CeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.+..-.....+|+.+...+.... .+-..+...++++|++|..- .|..|+.+.
T Consensus 280 G~v~~S~d~G~tW~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~~G-------~il~~~~~~ 332 (334)
T PRK13684 280 GTLLVSKDGGKTWEKDPVGEEVPS---NFYKIVFLDPEKGFVLGQRG-------VLLRYVGSA 332 (334)
T ss_pred CeEEEeCCCCCCCeECCcCCCCCc---ceEEEEEeCCCceEEECCCc-------eEEEecCCC
Confidence 445444445579999753221111 11122334577888888633 466777654
No 159
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=69.52 E-value=1.5e+02 Score=30.99 Aligned_cols=209 Identities=15% Similarity=0.080 Sum_probs=102.3
Q ss_pred ccEEEEEeCCCeeEEEecCCC--ceeeCCCCCCCcccC--CCCee-----------------EEEeCCEEEEEcccccCC
Q 016421 97 EHWVYLVCDPRGWEAFDPMKK--KWMALPKIPCDECFN--HADKE-----------------SLAVGSELLVFGRELFDF 155 (390)
Q Consensus 97 ~~~l~~~~~~~~~~~~d~~~~--~W~~l~~~p~~~~~~--~~~~~-----------------~~~~~~~iy~~Gg~~~~~ 155 (390)
++.+|+......++++|..+. .|..-+..+...... .|+.. ....+++||+... +.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~---Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS---DA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC---CC
Confidence 688888877788999999855 587654443211000 01100 0123446665332 34
Q ss_pred eEEEEECCCCc--Eee-----------cCCCCCCC--cceeeeeeCCEEEEEeccCCCC----CccceEEEEECCCCc--
Q 016421 156 AIWKYSLVFRS--WMK-----------CEGMNHPR--CLFGSGSLGSIAIIAGGSDKNG----HVLKSAELYDSTTGR-- 214 (390)
Q Consensus 156 ~~~~yd~~t~~--W~~-----------~~~~~~~r--~~~~~~~~~~~lyv~GG~~~~~----~~~~~~~~yd~~t~~-- 214 (390)
.++-+|..|++ |.- ++..+... ....-++.++.||+ |+...+. ...-.+..||..|++
T Consensus 271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEe
Confidence 56667777664 421 11111111 11233455777776 5432111 124568899999996
Q ss_pred EEEcC--CC-----CCC----CcCc---eEEEE---CCEEEEEecccC-----------CCccCceEEEEeCCCCc--eE
Q 016421 215 WEMLP--SM-----HSP----RRLC---SGFFM---DGKFYVIGGMSS-----------PTVSLTCGEEFDLETRK--WR 264 (390)
Q Consensus 215 W~~~~--~~-----~~~----r~~~---~~~~~---~~~iyv~GG~~~-----------~~~~~~~v~~yd~~~~~--W~ 264 (390)
|+.-. +. +.. +... ....+ .|.+|+--|... .+.+..++...|+.|.+ |.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 76521 11 100 1111 12233 356777444211 12356789999998874 76
Q ss_pred EccCCCCCCCCcCCCCCEEEEE---CCE---EEEEecCCCeEEEEeCCCCc
Q 016421 265 KIEGMYPNVNRAAQAPPLVAVV---DNQ---LYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~---~g~---l~v~gg~~~~v~~yd~~~~~ 309 (390)
.-.........-.-..+.++-+ +|+ +.+.+...+.++++|.++++
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 4321111000000011223322 552 55556666778888887764
No 160
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.84 E-value=65 Score=27.47 Aligned_cols=99 Identities=19% Similarity=0.384 Sum_probs=59.2
Q ss_pred eEEEECCEEEEEecccCCCccCceEEEEeCCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCC
Q 016421 229 SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKL 306 (390)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~ 306 (390)
+....+|+||.-.|.-+ .+.+.++|..+.+ |++- ++++ .-++-+++..++.+|.+--.-+.-+.||+.
T Consensus 50 GL~~~~g~i~esTG~yg----~S~ir~~~L~~gq~~~s~~--l~~~----~~FgEGit~~gd~~y~LTw~egvaf~~d~~ 119 (262)
T COG3823 50 GLEYLDGHILESTGLYG----FSKIRVSDLTTGQEIFSEK--LAPD----TVFGEGITKLGDYFYQLTWKEGVAFKYDAD 119 (262)
T ss_pred ceeeeCCEEEEeccccc----cceeEEEeccCceEEEEee--cCCc----cccccceeeccceEEEEEeccceeEEEChH
Confidence 44567888888777643 4568889998665 5432 2211 123335888999999997555667778765
Q ss_pred CCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCC
Q 016421 307 KNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQR 344 (390)
Q Consensus 307 ~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~ 344 (390)
+ .+.+...+-+.. +|| ++.-+..|++-.|..
T Consensus 120 t--~~~lg~~~y~Ge---GWg--Lt~d~~~LimsdGsa 150 (262)
T COG3823 120 T--LEELGRFSYEGE---GWG--LTSDDKNLIMSDGSA 150 (262)
T ss_pred H--hhhhcccccCCc---cee--eecCCcceEeeCCce
Confidence 4 333443333222 344 445566666666643
No 161
>PTZ00420 coronin; Provisional
Probab=68.27 E-value=1.4e+02 Score=30.03 Aligned_cols=151 Identities=11% Similarity=0.100 Sum_probs=73.7
Q ss_pred EEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC
Q 016421 144 ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 144 ~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
.+++.++. +..+.+||..+.+-.. .+.......++. ..++.+++.++.+ ..+.+||+.++.=.. .+.
T Consensus 139 ~iLaSgS~--DgtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~i~--tl~ 206 (568)
T PTZ00420 139 YIMCSSGF--DSFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEIAS--SFH 206 (568)
T ss_pred eEEEEEeC--CCeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecC------CEEEEEECCCCcEEE--EEe
Confidence 44455543 4578889988765211 111111111222 1256777766533 348899998765321 111
Q ss_pred CCCc--CceEEE-----ECCEEEEEecccCCCccCceEEEEeCCC-CceEEccCCCCCCCCcCCCCCEEEE---ECCEEE
Q 016421 223 SPRR--LCSGFF-----MDGKFYVIGGMSSPTVSLTCGEEFDLET-RKWRKIEGMYPNVNRAAQAPPLVAV---VDNQLY 291 (390)
Q Consensus 223 ~~r~--~~~~~~-----~~~~iyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~~---~~g~l~ 291 (390)
.... ....+. -++...+.+|.+.. ....+..||+.+ ..-.....+.. ..+..+-. -.|.+|
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~~~ld~------~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVTMSIDN------ASAPLIPHYDESTGLIY 278 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEEEEecC------CccceEEeeeCCCCCEE
Confidence 1111 111111 24455565665542 234678889875 22111111111 00111112 247888
Q ss_pred EEecCCCeEEEEeCCCCceEEcc
Q 016421 292 AVEYLTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~~W~~v~ 314 (390)
+.|..-+.+..|+...+.-..+.
T Consensus 279 lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EEEECCCeEEEEEccCCcEEeec
Confidence 88877788999988776544443
No 162
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=67.82 E-value=1.1e+02 Score=28.94 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=76.4
Q ss_pred cceEEEEECCCC-----cEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCc---eE-EccCCCCC
Q 016421 202 LKSAELYDSTTG-----RWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRK---WR-KIEGMYPN 272 (390)
Q Consensus 202 ~~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~---W~-~~~~~~~~ 272 (390)
.++++..|.... .|+.+.+--... ...+...++.+|+....+. ....+..+++.+.. |. .+.+....
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPREDGV-EYYVDHHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCCCce-EEEEEccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCCCCc
Confidence 478999999875 788774322221 1223345889999876433 34567888888765 66 43332221
Q ss_pred CCCcCCCCCEEEEECCEEEEEe--cCCCeEEEEeCC-CCceEEccCCCccccCCCcceeEEEEe---CCE-EEEEcCCCC
Q 016421 273 VNRAAQAPPLVAVVDNQLYAVE--YLTNMVKKYDKL-KNTWDVLGRLPVRADLSNGWGLAFKAC---GNE-LLVVGGQRG 345 (390)
Q Consensus 273 ~~~~~~~~~~~~~~~g~l~v~g--g~~~~v~~yd~~-~~~W~~v~~~~~~~~~~~~~~~~~~~~---~~~-lyv~GG~~~ 345 (390)
. .-..+...++.|++.. .....|.+||.. +..-..+ .+|.... ...... .+. .|.+.+..
T Consensus 327 ~-----~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~-~~p~~g~------v~~~~~~~~~~~~~~~~ss~~- 393 (414)
T PF02897_consen 327 V-----SLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREI-PLPEAGS------VSGVSGDFDSDELRFSYSSFT- 393 (414)
T ss_dssp E-----EEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEE-ESSSSSE------EEEEES-TT-SEEEEEEEETT-
T ss_pred e-----eEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeee-cCCcceE------EeccCCCCCCCEEEEEEeCCC-
Confidence 1 1113566788888774 345689999988 3222223 2332110 111111 223 45555655
Q ss_pred CCCCeEEEeeecCCC
Q 016421 346 PEGENVVLNSWCPKS 360 (390)
Q Consensus 346 ~~~~~~~i~~y~~~~ 360 (390)
....++.||+.+
T Consensus 394 ---~P~~~y~~d~~t 405 (414)
T PF02897_consen 394 ---TPPTVYRYDLAT 405 (414)
T ss_dssp ---EEEEEEEEETTT
T ss_pred ---CCCEEEEEECCC
Confidence 345799999998
No 163
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=67.18 E-value=95 Score=27.85 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=55.3
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEc
Q 016421 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v 313 (390)
.|.+...||.++ .+-+|++++..=.....+......+..+-.+.-.+++.-++.|..-..+..||.++.+=...
T Consensus 108 Sg~~VAcGGLdN------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 108 SGNFVACGGLDN------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred CCCeEEecCcCc------eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEE
Confidence 456666677643 34568777543222222211111112122233345555555554456778899998864432
Q ss_pred cCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 314 GRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
-.--. .. -.+..+...+++.||-||.+. ..++||...
T Consensus 182 f~GH~-gD---V~slsl~p~~~ntFvSg~cD~------~aklWD~R~ 218 (343)
T KOG0286|consen 182 FHGHT-GD---VMSLSLSPSDGNTFVSGGCDK------SAKLWDVRS 218 (343)
T ss_pred ecCCc-cc---EEEEecCCCCCCeEEeccccc------ceeeeeccC
Confidence 11000 00 011222223788999999874 345677665
No 164
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.75 E-value=97 Score=27.41 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=58.5
Q ss_pred EEEEC-CEEEEEecccCCCccCceEEEEeCCCC--ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCC
Q 016421 230 GFFMD-GKFYVIGGMSSPTVSLTCGEEFDLETR--KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKL 306 (390)
Q Consensus 230 ~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~ 306 (390)
.++++ .+-|++-|.. ...+..-|+.++ .|+.+-.... -..+.++++. .++|.+.+.++..+..
T Consensus 16 LVV~~dskT~v~igSH-----s~~~~avd~~sG~~~We~ilg~Ri--------E~sa~vvgdf-VV~GCy~g~lYfl~~~ 81 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSH-----SGIVIAVDPQSGNLIWEAILGVRI--------ECSAIVVGDF-VVLGCYSGGLYFLCVK 81 (354)
T ss_pred EEEecCCceEEEEecC-----CceEEEecCCCCcEEeehhhCcee--------eeeeEEECCE-EEEEEccCcEEEEEec
Confidence 44554 3445444432 234566788776 4887654322 2235567766 7888888999999988
Q ss_pred CC--ceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 307 KN--TWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 307 ~~--~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++ -|..+..-...- .+.+..++.+.-+|-.++ ..+..|+.+
T Consensus 82 tGs~~w~f~~~~~vk~-------~a~~d~~~glIycgshd~------~~yalD~~~ 124 (354)
T KOG4649|consen 82 TGSQIWNFVILETVKV-------RAQCDFDGGLIYCGSHDG------NFYALDPKT 124 (354)
T ss_pred chhheeeeeehhhhcc-------ceEEcCCCceEEEecCCC------cEEEecccc
Confidence 87 377654221111 123344444444554443 355667766
No 165
>PRK01742 tolB translocation protein TolB; Provisional
Probab=65.63 E-value=1.3e+02 Score=28.84 Aligned_cols=139 Identities=8% Similarity=-0.041 Sum_probs=65.2
Q ss_pred CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCC-EEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee
Q 016421 107 RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGS-ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL 185 (390)
Q Consensus 107 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 185 (390)
..++.+|..+.+-..+...+... ....+..++ .|++........++|.+|..++..+.+..-........ -.-
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~-----~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~-wSp 301 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHN-----GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPS-WSP 301 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCcc-----CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEE-ECC
Confidence 34667777665544444333211 011233344 44443322223468888988887766543221111111 112
Q ss_pred CC-EEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEECC-EEEEEecccCCCccCceEEEEeCCCCce
Q 016421 186 GS-IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDG-KFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++ .|++.....+ ...++.+|..++.-+.+.. ..+. ....-+| .|++.++ ..+..+|+.++++
T Consensus 302 DG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~---~~~~-~~~SpDG~~ia~~~~--------~~i~~~Dl~~g~~ 365 (429)
T PRK01742 302 DGQSILFTSDRSG----SPQVYRMSASGGGASLVGG---RGYS-AQISADGKTLVMING--------DNVVKQDLTSGST 365 (429)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEEecC---CCCC-ccCCCCCCEEEEEcC--------CCEEEEECCCCCe
Confidence 44 4554433222 2357777766554333321 1111 1122244 4544432 2366689999888
Q ss_pred EEcc
Q 016421 264 RKIE 267 (390)
Q Consensus 264 ~~~~ 267 (390)
..+.
T Consensus 366 ~~lt 369 (429)
T PRK01742 366 EVLS 369 (429)
T ss_pred EEec
Confidence 7654
No 166
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=65.49 E-value=1.1e+02 Score=28.17 Aligned_cols=143 Identities=9% Similarity=0.110 Sum_probs=76.1
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcce--eeeeeCCEEEEEeccCCCCCccceEEEEECCCC--cEEE
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF--GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG--RWEM 217 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~--~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~ 217 (390)
++.+.+.||.+ ...++|+..++.|--. ++...-.. ..-.+++.+.+.|+..+. +.++...++ .|..
T Consensus 75 ~~~l~aTGGgD--D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG~------v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 75 NNNLVATGGGD--DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSGK------VLVFKVSTGGEQWKL 144 (399)
T ss_pred CCceEEecCCC--ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCcc------EEEEEcccCceEEEe
Confidence 34555666643 4567888888875322 22222111 222347778888877653 566666555 4665
Q ss_pred cCCCCCC--CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 218 LPSMHSP--RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 218 ~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
..++..- ...|- .+.|+++|..++ ++|+|.+.++.=.++ |+... .++..+-..-+|+-.+.|.
T Consensus 145 ~~e~~dieWl~WHp----~a~illAG~~DG------svWmw~ip~~~~~kv--~~Gh~---~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 145 DQEVEDIEWLKWHP----RAHILLAGSTDG------SVWMWQIPSQALCKV--MSGHN---SPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred ecccCceEEEEecc----cccEEEeecCCC------cEEEEECCCcceeeE--ecCCC---CCcccccccCCCceEEEEe
Confidence 4322210 00111 234666654432 477887777532222 22211 1122223344577777777
Q ss_pred CCCeEEEEeCCCCc
Q 016421 296 LTNMVKKYDKLKNT 309 (390)
Q Consensus 296 ~~~~v~~yd~~~~~ 309 (390)
..+.|.+||+.+.+
T Consensus 210 ~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQ 223 (399)
T ss_pred cCceEEEEecCCCc
Confidence 77889999999875
No 167
>PRK10115 protease 2; Provisional
Probab=64.10 E-value=1.8e+02 Score=29.99 Aligned_cols=150 Identities=10% Similarity=-0.087 Sum_probs=76.8
Q ss_pred cCCeEEEEEC--CCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECC-CCcEEEcCCCCCCCcCce
Q 016421 153 FDFAIWKYSL--VFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDST-TGRWEMLPSMHSPRRLCS 229 (390)
Q Consensus 153 ~~~~~~~yd~--~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~r~~~~ 229 (390)
..+.++.|+. .+..|..+.+.+. .........++.+|+.--... ....+...+.. ++.|+.+-+......--.
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ly~~tn~~~---~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~ 320 (686)
T PRK10115 245 TTSEVLLLDAELADAEPFVFLPRRK-DHEYSLDHYQHRFYLRSNRHG---KNFGLYRTRVRDEQQWEELIPPRENIMLEG 320 (686)
T ss_pred ccccEEEEECcCCCCCceEEEECCC-CCEEEEEeCCCEEEEEEcCCC---CCceEEEecCCCcccCeEEECCCCCCEEEE
Confidence 3456777773 2334332222111 222233344678888754322 23346666766 578988754322222223
Q ss_pred EEEECCEEEEEecccCCCccCceEEEEeCCCCceEEcc-CCCCCCCCcCCCCCEEE--EECCEEEEE-ec--CCCeEEEE
Q 016421 230 GFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIE-GMYPNVNRAAQAPPLVA--VVDNQLYAV-EY--LTNMVKKY 303 (390)
Q Consensus 230 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~--~~~g~l~v~-gg--~~~~v~~y 303 (390)
....++.|++..-.++ ...++.+|..+.....+. ..+... . ..... .-++.+++. .+ ....++.|
T Consensus 321 ~~~~~~~l~~~~~~~g----~~~l~~~~~~~~~~~~l~~~~~~~~---~--~~~~~~~~~~~~~~~~~ss~~~P~~~y~~ 391 (686)
T PRK10115 321 FTLFTDWLVVEERQRG----LTSLRQINRKTREVIGIAFDDPAYV---T--WIAYNPEPETSRLRYGYSSMTTPDTLFEL 391 (686)
T ss_pred EEEECCEEEEEEEeCC----EEEEEEEcCCCCceEEecCCCCceE---e--eecccCCCCCceEEEEEecCCCCCEEEEE
Confidence 3445777777754432 345778887666655544 211100 0 00000 112344443 33 35789999
Q ss_pred eCCCCceEEccC
Q 016421 304 DKLKNTWDVLGR 315 (390)
Q Consensus 304 d~~~~~W~~v~~ 315 (390)
|+.+++|+.+..
T Consensus 392 d~~~~~~~~l~~ 403 (686)
T PRK10115 392 DMDTGERRVLKQ 403 (686)
T ss_pred ECCCCcEEEEEe
Confidence 999999887754
No 168
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=63.43 E-value=1.2e+02 Score=27.70 Aligned_cols=184 Identities=11% Similarity=0.068 Sum_probs=81.8
Q ss_pred eeeeeeCCEEEEEeccCC----CCCccceEEEEEC-CCCcEEEcCCC---C--CC---CcCceEEEECCEEEEEecccCC
Q 016421 180 FGSGSLGSIAIIAGGSDK----NGHVLKSAELYDS-TTGRWEMLPSM---H--SP---RRLCSGFFMDGKFYVIGGMSSP 246 (390)
Q Consensus 180 ~~~~~~~~~lyv~GG~~~----~~~~~~~~~~yd~-~t~~W~~~~~~---~--~~---r~~~~~~~~~~~iyv~GG~~~~ 246 (390)
++.+.+++.|+++....- .......+..|.. ...+|+..... . .. ...++.++-+++||++-|.-..
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 456778999998875321 1112222334443 44579763211 1 11 1245666789999988654321
Q ss_pred --CccCceEEEE--eCCCCceEEccCCCCCCCCc-----CCCCCEEEEECCEEEEE--e----cC-CCeEEEEeCC-CCc
Q 016421 247 --TVSLTCGEEF--DLETRKWRKIEGMYPNVNRA-----AQAPPLVAVVDNQLYAV--E----YL-TNMVKKYDKL-KNT 309 (390)
Q Consensus 247 --~~~~~~v~~y--d~~~~~W~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~v~--g----g~-~~~v~~yd~~-~~~ 309 (390)
+.....+..+ +....+|.....++...... ...+..+..-+|.|..- + +. .-.+.+|-.. ...
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~ 161 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKT 161 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS
T ss_pred cccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccc
Confidence 1112223333 22334698876665422100 00111111123332221 1 12 2456778766 568
Q ss_pred eEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEE-ecccC
Q 016421 310 WDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKV-LAEKQ 376 (390)
Q Consensus 310 W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~-~~~~p 376 (390)
|..-..++.... ....++.. +++|+++...++- +.+ +|...+ -..+|++ ++.++
T Consensus 162 W~lskg~s~~gC----~~psv~EWe~gkLlM~~~c~~g--~rr---VYeS~D----mG~tWtea~gtls 217 (310)
T PF13859_consen 162 WKLSKGMSPAGC----SDPSVVEWEDGKLLMMTACDDG--RRR---VYESGD----MGTTWTEALGTLS 217 (310)
T ss_dssp -EE-S----TT-----EEEEEEEE-TTEEEEEEE-TTS--------EEEESS----TTSS-EE-TTTTT
T ss_pred eEeccccCCCCc----ceEEEEeccCCeeEEEEecccc--eEE---EEEEcc----cceehhhccCccc
Confidence 998776654332 23567788 8899999876542 112 444433 2358997 56664
No 169
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=62.56 E-value=23 Score=32.12 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=38.9
Q ss_pred EECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcC
Q 016421 285 VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 285 ~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 342 (390)
-++|+||+.....+.+..+|+++++.+.+..+|...+ |.+ -. |.+.++|-
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r-----GL~--f~-G~llvVgm 259 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR-----GLA--FA-GDFAFVGL 259 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc-----ccc--ee-CCEEEEEe
Confidence 4789999999989999999999999999988876443 233 23 66666664
No 170
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=58.39 E-value=1.6e+02 Score=27.48 Aligned_cols=110 Identities=11% Similarity=-0.095 Sum_probs=60.7
Q ss_pred ccEEEEEeCC-----CeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccc-------cCCeEEEEECC
Q 016421 97 EHWVYLVCDP-----RGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGREL-------FDFAIWKYSLV 163 (390)
Q Consensus 97 ~~~l~~~~~~-----~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~-------~~~~~~~yd~~ 163 (390)
..++|+.... ..+..+|..+.+- +..++.....+ . .+.. +..+|+...+. ....+.+||+.
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v--~g~i~~G~~P~---~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRV--LGMTDGGFLPN---P-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEE--EEEEEccCCCc---e-eECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 3456666432 5677888877543 22233221111 1 2333 56778776522 23678999999
Q ss_pred CCcEe-ecCCCCCCCc-------ceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 164 FRSWM-KCEGMNHPRC-------LFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 164 t~~W~-~~~~~~~~r~-------~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
|.+-. +++..+.||. .++...-+..+||.- . ...+.+-+.|..+++-..
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~----~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-F----SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec-C----CCCCEEEEEECCCCcEEE
Confidence 98763 3443344442 122222245677762 1 135679999999887544
No 171
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=58.01 E-value=1.6e+02 Score=27.31 Aligned_cols=143 Identities=16% Similarity=0.173 Sum_probs=76.5
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceE--EEECCEEEEEecccCCCccCceEEEEeCCC--C
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSG--FFMDGKFYVIGGMSSPTVSLTCGEEFDLET--R 261 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~--~ 261 (390)
++.+.+.||-+. ..++++..++.|-- .++.....-.. ..++|.+.+.|+.++ .+.+++..+ .
T Consensus 75 ~~~l~aTGGgDD------~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG------~v~v~~~stg~~ 140 (399)
T KOG0296|consen 75 NNNLVATGGGDD------LAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG------KVLVFKVSTGGE 140 (399)
T ss_pred CCceEEecCCCc------eEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc------cEEEEEcccCce
Confidence 567777787543 36788888888532 23333322222 245777777666554 244454444 4
Q ss_pred ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEc
Q 016421 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVG 341 (390)
Q Consensus 262 ~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~G 341 (390)
+|.-...+..-.. -+.+ -.+.+++.|...+.+|+|...+..=.++-.-+..+ +.++-..-+|+-.+.|
T Consensus 141 ~~~~~~e~~dieW--l~WH-----p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~-----ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 141 QWKLDQEVEDIEW--LKWH-----PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP-----CTCGEFIPDGKRILTG 208 (399)
T ss_pred EEEeecccCceEE--EEec-----ccccEEEeecCCCcEEEEECCCcceeeEecCCCCC-----cccccccCCCceEEEE
Confidence 5765433322100 0011 12467777877889999988775333332211111 1123333466766666
Q ss_pred CCCCCCCCeEEEeeecCCC
Q 016421 342 GQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 342 G~~~~~~~~~~i~~y~~~~ 360 (390)
-.++ .|.+|++.+
T Consensus 209 y~dg------ti~~Wn~kt 221 (399)
T KOG0296|consen 209 YDDG------TIIVWNPKT 221 (399)
T ss_pred ecCc------eEEEEecCC
Confidence 5443 477888877
No 172
>PRK13684 Ycf48-like protein; Provisional
Probab=56.97 E-value=1.6e+02 Score=27.13 Aligned_cols=175 Identities=13% Similarity=0.113 Sum_probs=78.6
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCC-CCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM-NHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLP 219 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~-~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 219 (390)
++..++.|.. ..++.=+-.-.+|+.+... ..+........+ ++.+|+.|.. ..++.=+-.-.+|+.+.
T Consensus 99 ~~~~~~~G~~---g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~ 168 (334)
T PRK13684 99 GDEGWIVGQP---SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALV 168 (334)
T ss_pred CCcEEEeCCC---ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCc
Confidence 4455665531 2333333334589887532 122222233333 3445555431 12333333456899875
Q ss_pred CCCCCCcCceEEEECCEEEEEecccCCCccCceEEE-EeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCC
Q 016421 220 SMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEE-FDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTN 298 (390)
Q Consensus 220 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~-yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~ 298 (390)
..... ....+....+..|++.|..+ .++. .|....+|+.+...... .....+..-+++++++|.. +
T Consensus 169 ~~~~g-~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~~~~~-----~l~~i~~~~~g~~~~vg~~-G 235 (334)
T PRK13684 169 EDAAG-VVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQRNSSR-----RLQSMGFQPDGNLWMLARG-G 235 (334)
T ss_pred CCCcc-eEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeCCCcc-----cceeeeEcCCCCEEEEecC-C
Confidence 43222 22333344444455444322 1222 34455679987543221 1111223346788888743 3
Q ss_pred eEEEE--eCCCCceEEccCCCccccCCCcceeEEEE-eCCEEEEEcCC
Q 016421 299 MVKKY--DKLKNTWDVLGRLPVRADLSNGWGLAFKA-CGNELLVVGGQ 343 (390)
Q Consensus 299 ~v~~y--d~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~lyv~GG~ 343 (390)
.+ .+ +-...+|+.+.. |...... +. .++.. -++.++++|..
T Consensus 236 ~~-~~~s~d~G~sW~~~~~-~~~~~~~-~l-~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 236 QI-RFNDPDDLESWSKPII-PEITNGY-GY-LDLAYRTPGEIWAGGGN 279 (334)
T ss_pred EE-EEccCCCCCccccccC-Ccccccc-ce-eeEEEcCCCCEEEEcCC
Confidence 33 34 223358998642 2111100 01 22222 26688888863
No 173
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=56.58 E-value=1.5e+02 Score=26.67 Aligned_cols=82 Identities=20% Similarity=0.213 Sum_probs=45.4
Q ss_pred CCEEEEE-ecccC-CC----ccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC-------CEEEEEecCCCeE
Q 016421 234 DGKFYVI-GGMSS-PT----VSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD-------NQLYAVEYLTNMV 300 (390)
Q Consensus 234 ~~~iyv~-GG~~~-~~----~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-------g~l~v~gg~~~~v 300 (390)
.|+|+|+ .|.-. .. .....+..||+.+++=...-.+|............+++-. +.+|+.+.....+
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~gl 90 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGL 90 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEE
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcE
Confidence 5678887 23321 11 2235788899999985444344432211111111222222 4789988777899
Q ss_pred EEEeCCCCc-eEEccC
Q 016421 301 KKYDKLKNT-WDVLGR 315 (390)
Q Consensus 301 ~~yd~~~~~-W~~v~~ 315 (390)
.+||..+++ |+....
T Consensus 91 IV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 91 IVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEEETTTTEEEEEETC
T ss_pred EEEEccCCcEEEEecC
Confidence 999999975 666654
No 174
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=56.57 E-value=1.4e+02 Score=26.24 Aligned_cols=123 Identities=21% Similarity=0.158 Sum_probs=65.0
Q ss_pred ceEEEEECCCCcEEEcCCCCCCCcCceE-EEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 203 KSAELYDSTTGRWEMLPSMHSPRRLCSG-FFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..|-.+|..|++=.+-=..+.+. .++ +..+|+|..+. +-.+|-.+|+.+-.=-.--.||.....+
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~V--tSlEvs~dG~ilTia-------~gssV~Fwdaksf~~lKs~k~P~nV~SA----- 230 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPV--TSLEVSQDGRILTIA-------YGSSVKFWDAKSFGLLKSYKMPCNVESA----- 230 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCC--cceeeccCCCEEEEe-------cCceeEEeccccccceeeccCccccccc-----
Confidence 45777777777643321222221 122 23477776663 1233445666553333333455432211
Q ss_pred EEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE-EeCCEEEEEcCCCC
Q 016421 282 LVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK-ACGNELLVVGGQRG 345 (390)
Q Consensus 282 ~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG~~~ 345 (390)
...-+..+||.||.-..+++||..++. ++.... ..+.+.-+++- .-+|.+|..|-.++
T Consensus 231 -SL~P~k~~fVaGged~~~~kfDy~Tge--Ei~~~n---kgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 231 -SLHPKKEFFVAGGEDFKVYKFDYNTGE--EIGSYN---KGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred -cccCCCceEEecCcceEEEEEeccCCc--eeeecc---cCCCCceEEEEECCCCceeeccCCCc
Confidence 222355789999988899999998875 222211 11112222221 23899999998775
No 175
>PTZ00421 coronin; Provisional
Probab=56.24 E-value=2.1e+02 Score=28.16 Aligned_cols=154 Identities=8% Similarity=0.071 Sum_probs=71.4
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCc-ceeee-eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRC-LFGSG-SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~-~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
+.+++.|+. +..+.+||..+++-... +..... -.++. ..++.+++.|+.+ ..+.+||+.++.-...-.
T Consensus 138 ~~iLaSgs~--DgtVrIWDl~tg~~~~~--l~~h~~~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 138 MNVLASAGA--DMVVNVWDVERGKAVEV--IKCHSDQITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred CCEEEEEeC--CCEEEEEECCCCeEEEE--EcCCCCceEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEEEe
Confidence 345555553 45788999887653221 111111 11122 2256777777654 347899998775321111
Q ss_pred CCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE--ECCEEEEEec-C
Q 016421 221 MHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV--VDNQLYAVEY-L 296 (390)
Q Consensus 221 ~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~g~l~v~gg-~ 296 (390)
..........+. .++..++.+|.+.. ....+..||+.+..-. +...... ......+.. .++.+++++| .
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~p-~~~~~~d----~~~~~~~~~~d~d~~~L~lggkg 280 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMASP-YSTVDLD----QSSALFIPFFDEDTNLLYIGSKG 280 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCCc-eeEeccC----CCCceEEEEEcCCCCEEEEEEeC
Confidence 111100111222 23334444444321 1345778898754311 1000000 001111222 2455555555 4
Q ss_pred CCeEEEEeCCCCceEEc
Q 016421 297 TNMVKKYDKLKNTWDVL 313 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v 313 (390)
-+.|..||..+++....
T Consensus 281 Dg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 281 EGNIRCFELMNERLTFC 297 (493)
T ss_pred CCeEEEEEeeCCceEEE
Confidence 67899999988775543
No 176
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=55.36 E-value=1.7e+02 Score=26.71 Aligned_cols=173 Identities=16% Similarity=0.103 Sum_probs=72.5
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCC-CCC-Ccce-eeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGM-NHP-RCLF-GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~-~~~-r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
.+.-|++|-. ..++.=+---.+|...... ..+ ...+ ++...++..|++|... -+..-.-.-.+|+.+
T Consensus 27 ~~~G~~VG~~---g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v 96 (302)
T PF14870_consen 27 PNHGWAVGAY---GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERV 96 (302)
T ss_dssp SS-EEEEETT---TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE-
T ss_pred CCEEEEEecC---CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEe
Confidence 4566777642 2333222233578776532 222 2222 4444578888886421 122222235579998
Q ss_pred C-CCCCCCcCceEEE-ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC
Q 016421 219 P-SMHSPRRLCSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL 296 (390)
Q Consensus 219 ~-~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~ 296 (390)
+ +.+.+........ -++.+++++.. ..+++=.-.-.+|+.+..-.... .......-+|++++++..
T Consensus 97 ~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~gs-----~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 97 PLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETSGS-----INDITRSSDGRYVAVSSR 164 (302)
T ss_dssp ---TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S---------EEEEEE-TTS-EEEEETT
T ss_pred ecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcce-----eEeEEECCCCcEEEEECc
Confidence 5 2233333333333 35667776532 23444444556899875433310 001122346777777755
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEc
Q 016421 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVG 341 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~G 341 (390)
-+-+..+|+-...|+........+.. .....-++.|+++.
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq-----~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQ-----SMGFSPDGNLWMLA 204 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EE-----EEEE-TTS-EEEEE
T ss_pred ccEEEEecCCCccceEEccCccceeh-----hceecCCCCEEEEe
Confidence 55566789988899997654322210 11112366777765
No 177
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=54.96 E-value=31 Score=18.88 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=18.0
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceE
Q 016421 332 ACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWK 370 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~ 370 (390)
..++.+|+... ++ .++.+|.++ +...|+
T Consensus 4 ~~~~~v~~~~~-~g------~l~a~d~~~----G~~~W~ 31 (33)
T smart00564 4 LSDGTVYVGST-DG------TLYALDAKT----GEILWT 31 (33)
T ss_pred EECCEEEEEcC-CC------EEEEEEccc----CcEEEE
Confidence 34566666543 21 588999987 556686
No 178
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=54.36 E-value=24 Score=20.67 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=15.6
Q ss_pred EEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 330 FKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 330 ~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.++.+++||+.+... .++++|+++
T Consensus 17 ~~v~~g~vyv~~~dg-------~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDG-------NLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTS-------EEEEEETT-
T ss_pred CEEECCEEEEEcCCC-------EEEEEeCCC
Confidence 456788888888733 588888764
No 179
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=54.29 E-value=1.4e+02 Score=28.73 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=32.9
Q ss_pred CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE---ECCEEEEEecccCCCccCceEEEEeCCCCc
Q 016421 187 SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF---MDGKFYVIGGMSSPTVSLTCGEEFDLETRK 262 (390)
Q Consensus 187 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 262 (390)
+.-|+.+|++ ..+-.+|.+|++-..- +..... ..++- -+.+++++||.++ .|..+|+.+++
T Consensus 270 g~~fLS~sfD------~~lKlwDtETG~~~~~--f~~~~~-~~cvkf~pd~~n~fl~G~sd~------ki~~wDiRs~k 333 (503)
T KOG0282|consen 270 GTSFLSASFD------RFLKLWDTETGQVLSR--FHLDKV-PTCVKFHPDNQNIFLVGGSDK------KIRQWDIRSGK 333 (503)
T ss_pred CCeeeeeecc------eeeeeeccccceEEEE--EecCCC-ceeeecCCCCCcEEEEecCCC------cEEEEeccchH
Confidence 3444555544 3366788888876442 111111 11221 1348999999764 35567776654
No 180
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.65 E-value=2.9e+02 Score=29.11 Aligned_cols=136 Identities=19% Similarity=0.212 Sum_probs=68.6
Q ss_pred EEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCC--EEEEEeccCCCCCccceEEEEECCCCcEEEcCCC
Q 016421 144 ELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGS--IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSM 221 (390)
Q Consensus 144 ~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 221 (390)
-+++-|+++..-.+|+++ .|+.|.. ..+.......+++.+.. .+++--|.+ .++-+||....+--+.=.-
T Consensus 219 pliVSG~DDRqVKlWrmn-etKaWEv-DtcrgH~nnVssvlfhp~q~lIlSnsED------ksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 219 PLIVSGADDRQVKLWRMN-ETKAWEV-DTCRGHYNNVSSVLFHPHQDLILSNSED------KSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred ceEEecCCcceeeEEEec-cccceee-hhhhcccCCcceEEecCccceeEecCCC------ccEEEEecccccceeeeec
Confidence 455666655555667766 3567743 23322222334444443 455544432 4477888776553221111
Q ss_pred CCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEE
Q 016421 222 HSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVK 301 (390)
Q Consensus 222 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~ 301 (390)
-..|+..-++--..++|..|-.+ .+.+|..+. -.++.++.+|.+|.+- -..+.
T Consensus 291 endRFW~laahP~lNLfAAgHDs-------Gm~VFkleR------------------Erpa~~v~~n~LfYvk--d~~i~ 343 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHDS-------GMIVFKLER------------------ERPAYAVNGNGLFYVK--DRFIR 343 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecCC-------ceEEEEEcc------------------cCceEEEcCCEEEEEc--cceEE
Confidence 22344333222245666654322 244453321 1235777888887775 45788
Q ss_pred EEeCCCCceEEcc
Q 016421 302 KYDKLKNTWDVLG 314 (390)
Q Consensus 302 ~yd~~~~~W~~v~ 314 (390)
.||..+.+=..+.
T Consensus 344 ~~d~~t~~d~~v~ 356 (1202)
T KOG0292|consen 344 SYDLRTQKDTAVA 356 (1202)
T ss_pred eeeccccccceeE
Confidence 8888775433333
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=53.02 E-value=1.6e+02 Score=25.81 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=69.8
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
..|.|+..||+ ..++..|..+++.++.-.- ..-+.|+++.- ++.| +.|+.++ .+-++|.+|.+-..+
T Consensus 125 ~enSi~~AgGD---~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~qi-lsG~EDG------tvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 125 SENSILFAGGD---GVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANGQI-LSGAEDG------TVRVWDTKTQKHVSM 193 (325)
T ss_pred CCCcEEEecCC---eEEEEEEecCCEEEEEEcC-CcceeeeeeecccCcce-eecCCCc------cEEEEeccccceeEE
Confidence 36788888874 4778899999887664221 11233343331 2232 3344443 367788888876543
Q ss_pred -CC-----CCCCCcCc--eEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEE
Q 016421 219 -PS-----MHSPRRLC--SGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQL 290 (390)
Q Consensus 219 -~~-----~~~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l 290 (390)
.+ ...|..+. .+...+..-.|.||-.. .-.+++.+.+-+.+-++|.+ . ..+.+....
T Consensus 194 ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~-------lslwhLrsse~t~vfpipa~-------v-~~v~F~~d~ 258 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK-------LSLWHLRSSESTCVFPIPAR-------V-HLVDFVDDC 258 (325)
T ss_pred eccccChhhcCcccCceeEEEeccCceEEecCCCc-------eeEEeccCCCceEEEecccc-------e-eEeeeecce
Confidence 22 12222221 33344555555554322 22356666665555555542 1 234444444
Q ss_pred EEEecCCCeEEEEe
Q 016421 291 YAVEYLTNMVKKYD 304 (390)
Q Consensus 291 ~v~gg~~~~v~~yd 304 (390)
.+.+|.-+.|..|.
T Consensus 259 vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 259 VLIGGEGNHVQSYT 272 (325)
T ss_pred EEEeccccceeeee
Confidence 45555445555553
No 182
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.74 E-value=1.7e+02 Score=26.00 Aligned_cols=102 Identities=18% Similarity=0.126 Sum_probs=55.7
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCc--EEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCC--
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR-- 261 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~-- 261 (390)
+.+-|++-|.+ ...+..-|+.++. |+.+ ...|...+++++++. .|+|-+++ .++..+.+|+
T Consensus 21 dskT~v~igSH-----s~~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy~g------~lYfl~~~tGs~ 85 (354)
T KOG4649|consen 21 DSKTLVVIGSH-----SGIVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCYSG------GLYFLCVKTGSQ 85 (354)
T ss_pred CCceEEEEecC-----CceEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEccC------cEEEEEecchhh
Confidence 34555554543 3347778999885 8875 334555667777777 45554433 2455555554
Q ss_pred ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016421 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 262 ~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
-|.-..--... .. +.+..++.+...|...+..+..|+.+..
T Consensus 86 ~w~f~~~~~vk------~~-a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 86 IWNFVILETVK------VR-AQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred eeeeeehhhhc------cc-eEEcCCCceEEEecCCCcEEEecccccc
Confidence 57543221111 11 1333444444455556677777877764
No 183
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=51.87 E-value=1.8e+02 Score=26.22 Aligned_cols=138 Identities=17% Similarity=0.114 Sum_probs=71.9
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
+.+++.. .+..+..||..+++-+. .+...-....++..+..=.+.||.++ .+..||..++.=..+..--
T Consensus 26 ~~LLvss---WDgslrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~ 94 (323)
T KOG1036|consen 26 SDLLVSS---WDGSLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHD 94 (323)
T ss_pred CcEEEEe---ccCcEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccCc------eEEEEEecCCcceeeccCC
Confidence 4554443 44577788887763211 11122222344455655666677654 3889999988766554322
Q ss_pred CCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeE
Q 016421 223 SPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMV 300 (390)
Q Consensus 223 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v 300 (390)
.+ -.++. ......+.||.+. .|..+|+....=......+. ......+.|...++|+....+
T Consensus 95 ~~---i~ci~~~~~~~~vIsgsWD~------~ik~wD~R~~~~~~~~d~~k--------kVy~~~v~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 95 EG---IRCIEYSYEVGCVISGSWDK------TIKFWDPRNKVVVGTFDQGK--------KVYCMDVSGNRLVVGTSDRKV 157 (323)
T ss_pred Cc---eEEEEeeccCCeEEEcccCc------cEEEEeccccccccccccCc--------eEEEEeccCCEEEEeecCceE
Confidence 22 11121 1233455566543 45667776511100001111 112344566667777778899
Q ss_pred EEEeCCCC
Q 016421 301 KKYDKLKN 308 (390)
Q Consensus 301 ~~yd~~~~ 308 (390)
..||..+.
T Consensus 158 ~iyDLRn~ 165 (323)
T KOG1036|consen 158 LIYDLRNL 165 (323)
T ss_pred EEEEcccc
Confidence 99998664
No 184
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=51.62 E-value=11 Score=35.45 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=35.1
Q ss_pred CCCChHHHHHHHhhhccccchhhhHhhcHHHHHHhhcCC
Q 016421 47 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGY 85 (390)
Q Consensus 47 ~~~LP~dl~~~iL~rlp~~~l~~~~~V~k~w~~l~~s~~ 85 (390)
.-.||.++...+++.|...++.+.+.+|+.|+-+..+..
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 347999999999999999999999999999998877654
No 185
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=51.54 E-value=1.7e+02 Score=25.73 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=67.7
Q ss_pred cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE
Q 016421 153 FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232 (390)
Q Consensus 153 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 232 (390)
....+..+|..|++-.+--.++.+....- +..++.+..+. +-+++...|+.+-.--.--.||.....++. .
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlE-vs~dG~ilTia-------~gssV~Fwdaksf~~lKs~k~P~nV~SASL-~ 233 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLE-VSQDGRILTIA-------YGSSVKFWDAKSFGLLKSYKMPCNVESASL-H 233 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCccee-eccCCCEEEEe-------cCceeEEeccccccceeeccCccccccccc-c
Confidence 45678888888876543333333332211 12256666652 123455666654432222345544322211 1
Q ss_pred ECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE---EECCEEEEEecCCCeEEEEe
Q 016421 233 MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA---VVDNQLYAVEYLTNMVKKYD 304 (390)
Q Consensus 233 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~g~l~v~gg~~~~v~~yd 304 (390)
-+..+||.||.+. -++.||-.|+.=.. .... ...++..+ .-+|.+|..|..-+.+..|.
T Consensus 234 P~k~~fVaGged~------~~~kfDy~TgeEi~--~~nk-----gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 234 PKKEFFVAGGEDF------KVYKFDYNTGEEIG--SYNK-----GHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred CCCceEEecCcce------EEEEEeccCCceee--eccc-----CCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 2457899988653 36778887765222 2111 11222222 34899999997767666664
No 186
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=50.77 E-value=1.8e+02 Score=25.90 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCc
Q 016421 336 ELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQH 377 (390)
Q Consensus 336 ~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~ 377 (390)
+|+++||.......... ..+. +...|+.+..-|.
T Consensus 160 ~LLlVgG~~~~~~~~s~--a~~~------GLtaWRiL~~~Py 193 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSK--ASSC------GLTAWRILSDSPY 193 (282)
T ss_pred CEEEEeccCCCCCcccc--cccc------CceEEEEcCCCCc
Confidence 69999997654321111 1122 3356888876653
No 187
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=48.77 E-value=2.7e+02 Score=27.19 Aligned_cols=96 Identities=13% Similarity=-0.008 Sum_probs=50.2
Q ss_pred cccEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC
Q 016421 96 VEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH 175 (390)
Q Consensus 96 ~~~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~ 175 (390)
+.+.+.+.+|..+++.+++..+...+-..+-..+.-... ..+....+.=.+.| ++...+.+|++.+++-..... -.
T Consensus 211 td~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~V-l~v~F~engdviTg--DS~G~i~Iw~~~~~~~~k~~~-aH 286 (626)
T KOG2106|consen 211 TDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFV-LCVTFLENGDVITG--DSGGNILIWSKGTNRISKQVH-AH 286 (626)
T ss_pred CCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEE-EEEEEcCCCCEEee--cCCceEEEEeCCCceEEeEee-ec
Confidence 345555556677888888888776554444333222111 11111122222222 134578899998887755433 33
Q ss_pred CCcceeeeeeC-CEEEEEeccC
Q 016421 176 PRCLFGSGSLG-SIAIIAGGSD 196 (390)
Q Consensus 176 ~r~~~~~~~~~-~~lyv~GG~~ 196 (390)
+-.-++.+.+. +.|.- ||.+
T Consensus 287 ~ggv~~L~~lr~GtllS-GgKD 307 (626)
T KOG2106|consen 287 DGGVFSLCMLRDGTLLS-GGKD 307 (626)
T ss_pred CCceEEEEEecCccEee-cCcc
Confidence 44445666664 45544 7754
No 188
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=48.76 E-value=1.4e+02 Score=24.04 Aligned_cols=84 Identities=11% Similarity=-0.022 Sum_probs=47.9
Q ss_pred eeeCCEEEEEeccCCCCCccceEEEEECCCCcE-EEcCCCCCCCc----CceEEE-ECCEEEEEecccCCCccCceEEEE
Q 016421 183 GSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRW-EMLPSMHSPRR----LCSGFF-MDGKFYVIGGMSSPTVSLTCGEEF 256 (390)
Q Consensus 183 ~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~r~----~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~y 256 (390)
+.++|.+|-++....... ..-+..||..+.+. +.+ ++|.... .....+ .++.+-++.-.... ..-.|++-
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~-~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~--~~~~IWvm 77 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSL-PLPFCNDDDDDSVSLSVVRGDCLCVLYQCDET--SKIEIWVM 77 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEE-CCCCccCccCCEEEEEEecCCEEEEEEeccCC--ccEEEEEE
Confidence 467899998876544321 12689999999999 554 3443322 222222 36777777432221 12345543
Q ss_pred ---eCCCCceEEccCCC
Q 016421 257 ---DLETRKWRKIEGMY 270 (390)
Q Consensus 257 ---d~~~~~W~~~~~~~ 270 (390)
+-...+|+++-.+.
T Consensus 78 ~~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 78 KKYGYGKESWTKLFTID 94 (164)
T ss_pred eeeccCcceEEEEEEEe
Confidence 33477899875443
No 189
>PF13013 F-box-like_2: F-box-like domain
Probab=48.39 E-value=27 Score=26.23 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=23.6
Q ss_pred CCCChHHHHHHHhhhccccchhhhHhhcH
Q 016421 47 LPGLVDDVALNCLAFACTSDYASLLFINK 75 (390)
Q Consensus 47 ~~~LP~dl~~~iL~rlp~~~l~~~~~V~k 75 (390)
+..||+||++.|+..-....+..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 77899999999999887777766666665
No 190
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=47.55 E-value=3.4e+02 Score=28.01 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=99.8
Q ss_pred CEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC
Q 016421 143 SELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH 222 (390)
Q Consensus 143 ~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 222 (390)
+.-+.+|+.. ...+.+|+-.+.+.-.-..-...+.......-++.+.+.|+.++ .|-+||..++-.... ..
T Consensus 319 GDWiA~g~~k-lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg------KVKvWn~~SgfC~vT--Ft 389 (893)
T KOG0291|consen 319 GDWIAFGCSK-LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG------KVKVWNTQSGFCFVT--FT 389 (893)
T ss_pred CCEEEEcCCc-cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC------cEEEEeccCceEEEE--ec
Confidence 5555666432 34667777555544222221222322222233788888888654 388899888765432 22
Q ss_pred CCCcCceEE--EECCEEEEEecccCCCccCceEEEEeCCCCc-eEEccCCCCCCCCcCCCCCEEEEEC--CEEEEEec-C
Q 016421 223 SPRRLCSGF--FMDGKFYVIGGMSSPTVSLTCGEEFDLETRK-WRKIEGMYPNVNRAAQAPPLVAVVD--NQLYAVEY-L 296 (390)
Q Consensus 223 ~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~--g~l~v~gg-~ 296 (390)
.+-.+++++ ...|+..+....++ +|-.+|...-. ++....+.+ .....++++ |.|.+.|+ .
T Consensus 390 eHts~Vt~v~f~~~g~~llssSLDG------tVRAwDlkRYrNfRTft~P~p-------~QfscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 390 EHTSGVTAVQFTARGNVLLSSSLDG------TVRAWDLKRYRNFRTFTSPEP-------IQFSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred cCCCceEEEEEEecCCEEEEeecCC------eEEeeeecccceeeeecCCCc-------eeeeEEEEcCCCCEEEeeccc
Confidence 233334443 23555555433332 34556665432 333322211 122344455 88888876 3
Q ss_pred CCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEeccc
Q 016421 297 TNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 297 ~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
.-.|.+|+.++++--.+-.--..+- .+.++ ...+.+.+-|-++. .|.+||.-+ +|.+++.+
T Consensus 457 ~F~IfvWS~qTGqllDiLsGHEgPV----s~l~f-~~~~~~LaS~SWDk------TVRiW~if~-------s~~~vEtl 517 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGHEGPV----SGLSF-SPDGSLLASGSWDK------TVRIWDIFS-------SSGTVETL 517 (893)
T ss_pred eEEEEEEEeecCeeeehhcCCCCcc----eeeEE-ccccCeEEeccccc------eEEEEEeec-------cCceeeeE
Confidence 4688899999988666533222221 11222 23444555555552 577888765 56666654
No 191
>PTZ00420 coronin; Provisional
Probab=47.34 E-value=3.1e+02 Score=27.55 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=36.8
Q ss_pred ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE-----eCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 286 VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA-----CGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 286 ~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~-----~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+|.+++.++..+.+.+||+.+.+ .+..+...... .....+. .++..++.+|.++.. .+.|.+||...
T Consensus 177 pdG~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH~g~---~~s~~v~~~~fs~d~~~IlTtG~d~~~--~R~VkLWDlr~ 249 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPRKQE--IASSFHIHDGG---KNTKNIWIDGLGGDDNYILSTGFSKNN--MREMKLWDLKN 249 (568)
T ss_pred CCCCEEEEEecCCEEEEEECCCCc--EEEEEecccCC---ceeEEEEeeeEcCCCCEEEEEEcCCCC--ccEEEEEECCC
Confidence 467888877777889999998754 22222211100 0011111 244566666655421 23578888774
No 192
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.85 E-value=1.5e+02 Score=29.26 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=56.8
Q ss_pred CEEEEEecc-cCCCccCceEEEEeCCCCceEEcc--CCCCCCCCcCCCCCEEE--EECCEEEEEecCCCeEEEEeCCCCc
Q 016421 235 GKFYVIGGM-SSPTVSLTCGEEFDLETRKWRKIE--GMYPNVNRAAQAPPLVA--VVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 235 ~~iyv~GG~-~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~--~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
..|+.+.-. +..+...-+.-+|+...++-+.++ .+|.+ +....+ ......+++|..-+++..||..++.
T Consensus 219 ~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~------s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~ 292 (545)
T PF11768_consen 219 YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLP------SQVICCARSPSEDKLVLGCEDGSIILYDTTRGV 292 (545)
T ss_pred cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecC------CcceEEecCcccceEEEEecCCeEEEEEcCCCe
Confidence 355555422 222233444556777777665543 22221 111122 2356788888888999999987764
Q ss_pred --eEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 310 --WDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 310 --W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
+.+.+-+|... .---+|.++++|+..| ++.+||..
T Consensus 293 t~~~ka~~~P~~i---------aWHp~gai~~V~s~qG------elQ~FD~A 329 (545)
T PF11768_consen 293 TLLAKAEFIPTLI---------AWHPDGAIFVVGSEQG------ELQCFDMA 329 (545)
T ss_pred eeeeeecccceEE---------EEcCCCcEEEEEcCCc------eEEEEEee
Confidence 33333222211 1112788899988654 46677754
No 193
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=46.41 E-value=1.6e+02 Score=27.69 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=39.8
Q ss_pred cceEEEEECCCCcEEEc-CCCCCCCcCceEEEECCE-EEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCC
Q 016421 202 LKSAELYDSTTGRWEML-PSMHSPRRLCSGFFMDGK-FYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQA 279 (390)
Q Consensus 202 ~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 279 (390)
...+|..|......+.+ ..++....+|---..+|+ |+..+...++ ...-+..||+.+..=+.+..+|. +
T Consensus 215 d~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~--~~~~i~~~d~~t~~~~~~~~~p~-------~ 285 (386)
T PF14583_consen 215 DQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGG--QDFWIAGYDPDTGERRRLMEMPW-------C 285 (386)
T ss_dssp S-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT----EEEEEE-TTT--EEEEEEE-S-------E
T ss_pred ceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCC--CceEEEeeCCCCCCceEEEeCCc-------e
Confidence 35799999775554444 333333333433344664 3333332222 23457789999875444544543 2
Q ss_pred CCEEEEECCEEEEEecC
Q 016421 280 PPLVAVVDNQLYAVEYL 296 (390)
Q Consensus 280 ~~~~~~~~g~l~v~gg~ 296 (390)
.+.....+|+|++-+|.
T Consensus 286 ~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 286 SHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEEE-TTSSEEEEEE-
T ss_pred eeeEEcCCCCEEEecCC
Confidence 23466678898888764
No 194
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=45.30 E-value=17 Score=31.88 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=32.0
Q ss_pred CCCCCCCCCChHHHHHHHhhhcccc-chhhhHhhcHHHHHHhhc
Q 016421 41 GPSDSLLPGLVDDVALNCLAFACTS-DYASLLFINKRFHKLIKS 83 (390)
Q Consensus 41 ~~~~~~~~~LP~dl~~~iL~rlp~~-~l~~~~~V~k~w~~l~~s 83 (390)
.....-+..||.+++.+||.|+|-. +|..+..|-.....++..
T Consensus 196 ~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 196 DPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred CcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 3345568899999999999999854 777777776666555553
No 195
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=44.92 E-value=51 Score=23.78 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=15.2
Q ss_pred CCCeEEEEeCCCCceEEcc
Q 016421 296 LTNMVKKYDKLKNTWDVLG 314 (390)
Q Consensus 296 ~~~~v~~yd~~~~~W~~v~ 314 (390)
..+.+..|||.+++.+.+.
T Consensus 35 ~~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp --EEEEEEETTTTEEEEEE
T ss_pred CCcCEEEEECCCCeEEEeh
Confidence 4578999999999998864
No 196
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=43.98 E-value=3e+02 Score=26.45 Aligned_cols=104 Identities=14% Similarity=-0.048 Sum_probs=54.3
Q ss_pred cceEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 202 LKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 202 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
..+++++|..++.=..+......-...+...-+.+|+......+ ...++.||+...+=+++..-.... ..+
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~~~~-----~~p 331 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSGGGN-----SNP 331 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEeeccCCCC-----cCc
Confidence 46799999988773333332222111222222345555533322 237889999887765554322211 111
Q ss_pred EEEEECCEEEEEecC---CCeEEEEeCCCCc-eEEccC
Q 016421 282 LVAVVDNQLYAVEYL---TNMVKKYDKLKNT-WDVLGR 315 (390)
Q Consensus 282 ~~~~~~g~l~v~gg~---~~~v~~yd~~~~~-W~~v~~ 315 (390)
...-+|+.+++-+. ...+..+|+.++. |..+..
T Consensus 332 -~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 332 -VWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred -cCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc
Confidence 22234444444322 1568899998877 888764
No 197
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=42.85 E-value=2.2e+02 Score=24.51 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=56.0
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE--ECCEEEEEecccCCCccCceEEEEeCCCCce
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF--MDGKFYVIGGMSSPTVSLTCGEEFDLETRKW 263 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W 263 (390)
++.|.+.+|.. ...+++-|..+++=-+. ...+.+|-.+. -+|-+++.|..+. ++-.+|+.-+.-
T Consensus 151 ~~~il~s~gag-----dc~iy~tdc~~g~~~~a---~sghtghilalyswn~~m~~sgsqdk------tirfwdlrv~~~ 216 (350)
T KOG0641|consen 151 GGAILASAGAG-----DCKIYITDCGRGQGFHA---LSGHTGHILALYSWNGAMFASGSQDK------TIRFWDLRVNSC 216 (350)
T ss_pred CceEEEecCCC-----cceEEEeecCCCCccee---ecCCcccEEEEEEecCcEEEccCCCc------eEEEEeeeccce
Confidence 45666666643 24566667665541111 12333444443 3777777765543 344566666554
Q ss_pred EEcc-CCCCCCCCcCCCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCc
Q 016421 264 RKIE-GMYPNVNRAAQAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 264 ~~~~-~~~~~~~~~~~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
...- .-........ +..+++.+ .|++.+-|..-.++..||...+.
T Consensus 217 v~~l~~~~~~~gles-savaav~vdpsgrll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 217 VNTLDNDFHDGGLES-SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred eeeccCcccCCCccc-ceeEEEEECCCcceeeeccCCCceEEEEeeCCc
Confidence 3322 1111111111 11122333 48888888777778888877665
No 198
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=42.83 E-value=2e+02 Score=24.05 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=42.6
Q ss_pred CeEEEEECCCCcEeecCCCCCC-Ccce-eeeee-C-CEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCc
Q 016421 155 FAIWKYSLVFRSWMKCEGMNHP-RCLF-GSGSL-G-SIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRR 226 (390)
Q Consensus 155 ~~~~~yd~~t~~W~~~~~~~~~-r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 226 (390)
..+|++|..++.|..+..-+.. ...+ .+.-+ + +.++++|...+.-..--.+++|++.++.-..+.+......
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkkq 163 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKKQ 163 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccce
Confidence 4789999999988665322211 1111 23333 3 4555566433322223469999999999988877655433
No 199
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=40.91 E-value=1.2e+02 Score=29.03 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=49.9
Q ss_pred CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEE---eCCEEEEEcCCCCCCCCeEEEeeecCCCCCC
Q 016421 287 DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKA---CGNELLVVGGQRGPEGENVVLNSWCPKSGVN 363 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~---~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~ 363 (390)
.|.-++-.++-..+-.||.+|++-..--.+... ..++. -+.+++++||.++ .|..||+.++..
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~--------~~cvkf~pd~~n~fl~G~sd~------ki~~wDiRs~kv 334 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLDKV--------PTCVKFHPDNQNIFLVGGSDK------KIRQWDIRSGKV 334 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEecCCC--------ceeeecCCCCCcEEEEecCCC------cEEEEeccchHH
Confidence 455555566667788899999875542111111 12222 2459999999875 477788776211
Q ss_pred C-----CCCceEEecccCccCeEEee
Q 016421 364 N-----GTLDWKVLAEKQHVGVFVYN 384 (390)
Q Consensus 364 ~-----~~~~W~~~~~~p~~~~~~~~ 384 (390)
- ....|..+.=.+..++|+.+
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeee
Confidence 1 11346666667777777754
No 200
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=40.69 E-value=2.8e+02 Score=25.07 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=95.0
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcEe----ecCCCCCCCcceeeeee--CCEEEEEeccCCCCCccceEEEEECCCC
Q 016421 140 AVGSELLVFGRELFDFAIWKYSLVFRSWM----KCEGMNHPRCLFGSGSL--GSIAIIAGGSDKNGHVLKSAELYDSTTG 213 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~----~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 213 (390)
+..+.+...||. .+..-+|+..+..=. ....++......+++.+ ++.|..-.| ..++-.+|.+++
T Consensus 106 sPSg~~VAcGGL--dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG-------D~TCalWDie~g 176 (343)
T KOG0286|consen 106 SPSGNFVACGGL--DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG-------DMTCALWDIETG 176 (343)
T ss_pred CCCCCeEEecCc--CceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC-------CceEEEEEcccc
Confidence 345666666774 456778887754221 11223444444444443 334433322 234677888887
Q ss_pred cEEEcCCCCCCCcCc-e--EEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEE
Q 016421 214 RWEMLPSMHSPRRLC-S--GFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQL 290 (390)
Q Consensus 214 ~W~~~~~~~~~r~~~-~--~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l 290 (390)
+-... ....-... + ....+++.|+-||++.. ...+|+....-.+ .++... ..-+.....-+|.-
T Consensus 177 ~~~~~--f~GH~gDV~slsl~p~~~ntFvSg~cD~~------aklWD~R~~~c~q--tF~ghe---sDINsv~ffP~G~a 243 (343)
T KOG0286|consen 177 QQTQV--FHGHTGDVMSLSLSPSDGNTFVSGGCDKS------AKLWDVRSGQCVQ--TFEGHE---SDINSVRFFPSGDA 243 (343)
T ss_pred eEEEE--ecCCcccEEEEecCCCCCCeEEecccccc------eeeeeccCcceeE--eecccc---cccceEEEccCCCe
Confidence 65432 11110000 1 11127899999998753 2346776664332 222211 11122233446667
Q ss_pred EEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 291 YAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 291 ~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
++.|..-..+-.||...++=-.+-.-+.... +.........|+|...|+.+. .+.+||.-
T Consensus 244 fatGSDD~tcRlyDlRaD~~~a~ys~~~~~~---gitSv~FS~SGRlLfagy~d~------~c~vWDtl 303 (343)
T KOG0286|consen 244 FATGSDDATCRLYDLRADQELAVYSHDSIIC---GITSVAFSKSGRLLFAGYDDF------TCNVWDTL 303 (343)
T ss_pred eeecCCCceeEEEeecCCcEEeeeccCcccC---CceeEEEcccccEEEeeecCC------ceeEeecc
Confidence 7777666788889988876333322111111 111122244788888886442 35567653
No 201
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=40.52 E-value=3.3e+02 Score=25.92 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=30.1
Q ss_pred ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEE-EeCCEEEEEcC
Q 016421 286 VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFK-ACGNELLVVGG 342 (390)
Q Consensus 286 ~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~-~~~~~lyv~GG 342 (390)
-++.++++|.. +.+..-....++|+++.....-... -+ .+. ..+++.|++|-
T Consensus 337 ~d~~~~a~G~~-G~v~~s~D~G~tW~~~~~~~~~~~~--ly--~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 337 SKKEAWAAGGS-GILLRSTDGGKSWKRDKGADNIAAN--LY--SVKFFDDKKGFVLGN 389 (398)
T ss_pred CCCcEEEEECC-CcEEEeCCCCcceeEccccCCCCcc--ee--EEEEcCCCceEEEeC
Confidence 35678887753 4566666677899997532111000 01 233 34588999884
No 202
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=40.30 E-value=3.7e+02 Score=26.38 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=47.5
Q ss_pred CCCCEEEEE--CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcce--eEEEEeCCEEEEEcCCCCCCCCeEEE
Q 016421 278 QAPPLVAVV--DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWG--LAFKACGNELLVVGGQRGPEGENVVL 353 (390)
Q Consensus 278 ~~~~~~~~~--~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~~~~~~~~lyv~GG~~~~~~~~~~i 353 (390)
|-.++.+.. +|+++..|..-++|..||. ..|..-+.+-.......+.+ .-....+|++++-=|.++ .+
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~------tL 388 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD------TL 388 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC------ce
Confidence 344445543 5777666666688999986 55655333222111111111 222245677666666553 46
Q ss_pred eeecCCCCCCCCCCceEEeccc
Q 016421 354 NSWCPKSGVNNGTLDWKVLAEK 375 (390)
Q Consensus 354 ~~y~~~~~~~~~~~~W~~~~~~ 375 (390)
.+||+.. .+...++|+-+..+
T Consensus 389 KvWDLrq-~kkpL~~~tgL~t~ 409 (641)
T KOG0772|consen 389 KVWDLRQ-FKKPLNVRTGLPTP 409 (641)
T ss_pred eeeeccc-cccchhhhcCCCcc
Confidence 6888875 33344567766543
No 203
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=40.16 E-value=2.6e+02 Score=24.65 Aligned_cols=162 Identities=14% Similarity=0.030 Sum_probs=85.0
Q ss_pred CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCC-cEEEcCCC----CCC------C-cCceEEEECCEEEEEecc
Q 016421 176 PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEMLPSM----HSP------R-RLCSGFFMDGKFYVIGGM 243 (390)
Q Consensus 176 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~----~~~------r-~~~~~~~~~~~iyv~GG~ 243 (390)
......++..++..|+++..... ...+.++.+..- .|+..... +.. . ....+...+|+.|++-..
T Consensus 9 ~~~DP~i~~~~~~yY~~~t~~~~---~~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~~g~yy~y~~~ 85 (286)
T PF04616_consen 9 DYADPSIVRFGDGYYLYGTTDPE---GPGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYINGKYYMYYSD 85 (286)
T ss_dssp SECSEEEEEETTEEEEEEEEBTC---ESBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEECCEEEEEEEcCCC---CCeEEEEECCCCcccccceeeecccccccccccccccCCeEEEcCCeEEEEEEc
Confidence 34556777889999999876532 245667765533 59875411 111 1 234455679998888662
Q ss_pred cCC-CccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEEC-CEEEEEecC--C----C--eEEEEeCCCCceEEc
Q 016421 244 SSP-TVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVD-NQLYAVEYL--T----N--MVKKYDKLKNTWDVL 313 (390)
Q Consensus 244 ~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-g~l~v~gg~--~----~--~v~~yd~~~~~W~~v 313 (390)
... ......+..=|...+.|+....+.... ....-+.+...+ |+.|++-+. . + .+...+.....+..-
T Consensus 86 ~~~~~~~~~~va~a~~~~Gp~~~~~~~~~~~--~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~~~~~~~ 163 (286)
T PF04616_consen 86 SGGDAGSGIGVATADSPDGPWTDPGKIPIPG--GNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDGTSLTGE 163 (286)
T ss_dssp ESTSTTEEEEEEEESSTTS-EEEEEEEEEES--SSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTTSSEEEE
T ss_pred cCCCCCcceeEEEeCCcccccccccceeecc--ccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCccccccCc
Confidence 111 111122333344557898775543210 122334566676 899998532 1 2 234455555554432
Q ss_pred c-C-C-Ccc--ccCCCcceeEEEEeCCEEEEEcC
Q 016421 314 G-R-L-PVR--ADLSNGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 314 ~-~-~-~~~--~~~~~~~~~~~~~~~~~lyv~GG 342 (390)
. . + +.. .......|..++..+|+.|++--
T Consensus 164 ~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s 197 (286)
T PF04616_consen 164 PVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYS 197 (286)
T ss_dssp ECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEE
T ss_pred ccccccccccccCCccccceEEEEcCCCEEEEEe
Confidence 2 1 0 100 11112345777788999888764
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.33 E-value=3.3e+02 Score=25.56 Aligned_cols=147 Identities=10% Similarity=0.139 Sum_probs=0.0
Q ss_pred EEEEEeccCCCCCccceEEEEECCCCc--EEEcC------CCCCCCcCceEEEECC--EEEEEecccCCCccCceEEEEe
Q 016421 188 IAIIAGGSDKNGHVLKSAELYDSTTGR--WEMLP------SMHSPRRLCSGFFMDG--KFYVIGGMSSPTVSLTCGEEFD 257 (390)
Q Consensus 188 ~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~------~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~v~~yd 257 (390)
.|+.+||... .+.+.+||++..+ |+.-. .|-.|.....+..+.+ .--++.+. ....+-.||
T Consensus 162 ~Iva~GGke~----~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-----~~hqvR~YD 232 (412)
T KOG3881|consen 162 YIVATGGKEN----INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-----RYHQVRLYD 232 (412)
T ss_pred ceEecCchhc----ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-----cceeEEEec
Q ss_pred CCCCc--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCC
Q 016421 258 LETRK--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGN 335 (390)
Q Consensus 258 ~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~ 335 (390)
+..++ -.++..+-.+.... .-+.++..+++|-..+.+..||..++. -+........|....+..+.+
T Consensus 233 t~~qRRPV~~fd~~E~~is~~------~l~p~gn~Iy~gn~~g~l~~FD~r~~k-----l~g~~~kg~tGsirsih~hp~ 301 (412)
T KOG3881|consen 233 TRHQRRPVAQFDFLENPISST------GLTPSGNFIYTGNTKGQLAKFDLRGGK-----LLGCGLKGITGSIRSIHCHPT 301 (412)
T ss_pred CcccCcceeEeccccCcceee------eecCCCcEEEEecccchhheecccCce-----eeccccCCccCCcceEEEcCC
Q ss_pred -EEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 336 -ELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 336 -~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+...+|-+. .+.+||.++
T Consensus 302 ~~~las~GLDR------yvRIhD~kt 321 (412)
T KOG3881|consen 302 HPVLASCGLDR------YVRIHDIKT 321 (412)
T ss_pred CceEEeeccce------eEEEeeccc
No 205
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=39.20 E-value=1.5e+02 Score=23.26 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=38.1
Q ss_pred EEEEEecCCCeEEEEeCCCCc---eEEccCCCccccCCCcceeEEEEe------CCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 289 QLYAVEYLTNMVKKYDKLKNT---WDVLGRLPVRADLSNGWGLAFKAC------GNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 289 ~l~v~gg~~~~v~~yd~~~~~---W~~v~~~~~~~~~~~~~~~~~~~~------~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
.+.++| ....+.+||.+.|+ +++++ ... .++++ ...+.++||.- +|.-||-+
T Consensus 65 D~LliG-t~t~llaYDV~~N~d~Fyke~~---DGv--------n~i~~g~~~~~~~~l~ivGGnc-------si~Gfd~~ 125 (136)
T PF14781_consen 65 DCLLIG-TQTSLLAYDVENNSDLFYKEVP---DGV--------NAIVIGKLGDIPSPLVIVGGNC-------SIQGFDYE 125 (136)
T ss_pred CEEEEe-ccceEEEEEcccCchhhhhhCc---cce--------eEEEEEecCCCCCcEEEECceE-------EEEEeCCC
Confidence 355555 45789999999886 33333 222 12222 56799999954 57778876
Q ss_pred CCCCCCCCceEEec
Q 016421 360 SGVNNGTLDWKVLA 373 (390)
Q Consensus 360 ~~~~~~~~~W~~~~ 373 (390)
-+ ..=|++.+
T Consensus 126 G~----e~fWtVtg 135 (136)
T PF14781_consen 126 GN----EIFWTVTG 135 (136)
T ss_pred Cc----EEEEEecc
Confidence 61 22387654
No 206
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=38.95 E-value=3e+02 Score=24.94 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=49.2
Q ss_pred cEEEEEeCCCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC
Q 016421 98 HWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR 177 (390)
Q Consensus 98 ~~l~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r 177 (390)
..+........+..||....+-...-.... . .+....++......+.+-.-.+.++...+..+|+.-+-=+-...+
T Consensus 27 ~~litss~dDsl~LYd~~~g~~~~ti~skk--y--G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~ 102 (311)
T KOG1446|consen 27 LLLITSSEDDSLRLYDSLSGKQVKTINSKK--Y--GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKR 102 (311)
T ss_pred CEEEEecCCCeEEEEEcCCCceeeEeeccc--c--cccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCce
Confidence 333333345578889988776543222221 1 111222333333333332223345666666666653321111111
Q ss_pred cc-eeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEE
Q 016421 178 CL-FGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEM 217 (390)
Q Consensus 178 ~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 217 (390)
.. ..+.. .+..|+-++.+ .++..+|..+....-
T Consensus 103 V~sL~~sP-~~d~FlS~S~D------~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 103 VNSLSVSP-KDDTFLSSSLD------KTVRLWDLRVKKCQG 136 (311)
T ss_pred EEEEEecC-CCCeEEecccC------CeEEeeEecCCCCce
Confidence 11 11112 34667766654 346777877665543
No 207
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=38.93 E-value=3.9e+02 Score=26.24 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=58.3
Q ss_pred CcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcC--CCCCEEEEECCEEEEEecCCCeE
Q 016421 225 RRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAA--QAPPLVAVVDNQLYAVEYLTNMV 300 (390)
Q Consensus 225 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~g~l~v~gg~~~~v 300 (390)
|...+.+.. ++++ +.+|+..+ +|..+|. ..|..-+.+-....+.. .........+|+.++--|.-+.+
T Consensus 317 Rv~~tsC~~nrdg~~-iAagc~DG-----SIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKL-IAAGCLDG-----SIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred ccCceeeecCCCcch-hhhcccCC-----ceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 444444443 5666 55666432 3555554 44544444333221111 11112334566655555556677
Q ss_pred EEEeCCC-----CceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCC
Q 016421 301 KKYDKLK-----NTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPK 359 (390)
Q Consensus 301 ~~yd~~~-----~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~ 359 (390)
-+||... +.|+-+..+-.. . -++..-+++|++.|-...+......++.||+-
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~-t------dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPG-T------DCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred eeeeccccccchhhhcCCCccCCC-C------ccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 7777643 345544322111 1 12334578888888655444333456667664
No 208
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=38.65 E-value=3e+02 Score=24.92 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=68.1
Q ss_pred eEEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEE
Q 016421 204 SAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLV 283 (390)
Q Consensus 204 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 283 (390)
++..||..++.-+.. ......-..++..+..=.+.||.++ .+-.||..+..=..+.....+. + ++
T Consensus 36 slrlYdv~~~~l~~~--~~~~~plL~c~F~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~~~i----~---ci 100 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK--FKHGAPLLDCAFADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHDEGI----R---CI 100 (323)
T ss_pred cEEEEeccchhhhhh--eecCCceeeeeccCCceEEEeccCc------eEEEEEecCCcceeeccCCCce----E---EE
Confidence 367788777732211 1111111233444554455566543 4677999988766665433311 0 12
Q ss_pred EEE-CCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCC
Q 016421 284 AVV-DNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSG 361 (390)
Q Consensus 284 ~~~-~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~ 361 (390)
... ....++.|+.-+.|..||+.... .+.....+.. .-+..+.+...|+|+.+. .+..||....
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~--~~~~~d~~kk------Vy~~~v~g~~LvVg~~~r------~v~iyDLRn~ 165 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRNKV--VVGTFDQGKK------VYCMDVSGNRLVVGTSDR------KVLIYDLRNL 165 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccccc--cccccccCce------EEEEeccCCEEEEeecCc------eEEEEEcccc
Confidence 222 23345667788899999987621 1111111111 234456677777777542 5888988763
No 209
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=38.26 E-value=2.6e+02 Score=27.40 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=0.0
Q ss_pred eeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE-CCEEEEEecccCCCccCceEEEEeC
Q 016421 180 FGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDL 258 (390)
Q Consensus 180 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~ 258 (390)
..++..++...++||.++. +.+|.+..+.-.+.......|...+.+.+ .+--|+..|.-.....+.++..+..
T Consensus 448 ~vAv~~~~~~vaVGG~Dgk------vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDGK------VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred eEEEcCCCCEEEEecccce------EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Q ss_pred CCCceE-EccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCC
Q 016421 259 ETRKWR-KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 259 ~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~ 307 (390)
.++.|. -.+.... .+=.-+++++..|..-..|.+|+.+.
T Consensus 522 ~~~~w~FHtakI~~----------~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 522 KTNRWAFHTAKINC----------VAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred ecceeeeeeeeEEE----------EEeCCCceEEEeccccceEEEEEccC
No 210
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.87 E-value=2.9e+02 Score=24.26 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=23.7
Q ss_pred EEECCEEEEEecCCCeEEEEeCCCC-ceEEccC
Q 016421 284 AVVDNQLYAVEYLTNMVKKYDKLKN-TWDVLGR 315 (390)
Q Consensus 284 ~~~~g~l~v~gg~~~~v~~yd~~~~-~W~~v~~ 315 (390)
-.+-|.++.++|..+.+.+|-...+ +|.++..
T Consensus 264 WS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 264 WSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred EeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 3456777777777788888876665 9999864
No 211
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=36.14 E-value=3e+02 Score=24.21 Aligned_cols=154 Identities=16% Similarity=0.057 Sum_probs=81.4
Q ss_pred EEEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCC------------cceeeeeeCCEEEEEeccCCCCCccceE
Q 016421 138 SLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPR------------CLFGSGSLGSIAIIAGGSDKNGHVLKSA 205 (390)
Q Consensus 138 ~~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r------------~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 205 (390)
-++.++.+|.--. .+..+.+||..+++-.....+|.+. .....++-.+-|+|+-....+.. .-.+
T Consensus 74 ~vVYngslYY~~~--~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivv 150 (250)
T PF02191_consen 74 HVVYNGSLYYNKY--NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVV 150 (250)
T ss_pred eEEECCcEEEEec--CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEE
Confidence 4556777765433 3568999999998754222222221 22344555677888755443221 1223
Q ss_pred EEEECCCC----cEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCC
Q 016421 206 ELYDSTTG----RWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPP 281 (390)
Q Consensus 206 ~~yd~~t~----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 281 (390)
-..|+.+- +|.. ..+.+....+- .+=|.+|++-..+... ....++||+.+++=..+. ++-.. .....
T Consensus 151 skld~~tL~v~~tw~T--~~~k~~~~naF-mvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~~~-i~f~~---~~~~~ 221 (250)
T PF02191_consen 151 SKLDPETLSVEQTWNT--SYPKRSAGNAF-MVCGVLYATDSYDTRD--TEIFYAFDTYTGKEEDVS-IPFPN---PYGNI 221 (250)
T ss_pred EeeCcccCceEEEEEe--ccCchhhccee-eEeeEEEEEEECCCCC--cEEEEEEECCCCceecee-eeecc---ccCce
Confidence 44565543 4753 23333333333 3448899997665432 445678999988765433 22111 11122
Q ss_pred EEEE---ECCEEEEEecCCCeEEEEeC
Q 016421 282 LVAV---VDNQLYAVEYLTNMVKKYDK 305 (390)
Q Consensus 282 ~~~~---~~g~l~v~gg~~~~v~~yd~ 305 (390)
.+.. .+.+||+..- +....|+.
T Consensus 222 ~~l~YNP~dk~LY~wd~--G~~v~Y~v 246 (250)
T PF02191_consen 222 SMLSYNPRDKKLYAWDN--GYQVTYDV 246 (250)
T ss_pred EeeeECCCCCeEEEEEC--CeEEEEEE
Confidence 2333 3567888853 34555654
No 212
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=35.14 E-value=3.5e+02 Score=24.55 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=11.8
Q ss_pred cCCeEEEEECCCCcEee
Q 016421 153 FDFAIWKYSLVFRSWMK 169 (390)
Q Consensus 153 ~~~~~~~yd~~t~~W~~ 169 (390)
.+..+.+||..+..-..
T Consensus 34 ~dDsl~LYd~~~g~~~~ 50 (311)
T KOG1446|consen 34 EDDSLRLYDSLSGKQVK 50 (311)
T ss_pred CCCeEEEEEcCCCceee
Confidence 34578889988876543
No 213
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=35.01 E-value=2.9e+02 Score=25.14 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=49.5
Q ss_pred eEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEE----ECCEEEEEecCCCeEEEEeCCCCceEE-ccCCCccccCCCcc
Q 016421 252 CGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAV----VDNQLYAVEYLTNMVKKYDKLKNTWDV-LGRLPVRADLSNGW 326 (390)
Q Consensus 252 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~----~~g~l~v~gg~~~~v~~yd~~~~~W~~-v~~~~~~~~~~~~~ 326 (390)
.+..||+.|-+.-.-+. |... ...++.. -.++||+.|..-+.|..||-.++.... ++.--.+. ..
T Consensus 239 ~~rlYdv~T~Qcfvsan-Pd~q-----ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs----ev 308 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSAN-PDDQ-----HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS----EV 308 (430)
T ss_pred ceeEEeccceeEeeecC-cccc-----cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc----ee
Confidence 45669998866543333 3211 1111221 358999999888899999988776433 22211110 01
Q ss_pred eeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 327 GLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 327 ~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..+...-|++.++-.|.+. -++.|.+.+
T Consensus 309 cSa~Ftkn~kyiLsSG~DS------~vkLWEi~t 336 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDS------TVKLWEIST 336 (430)
T ss_pred eeEEEccCCeEEeecCCcc------eeeeeeecC
Confidence 1223334777666666552 244555554
No 214
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.17 E-value=3.6e+02 Score=24.54 Aligned_cols=109 Identities=16% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCCCCcCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec---
Q 016421 221 MHSPRRLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY--- 295 (390)
Q Consensus 221 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg--- 295 (390)
.|.|-..|..+.. ...+.+|+-. +-....+||+.+.+=...-..+..+ ..+++.+..-+|++.....
T Consensus 1 ~~lP~RgH~~a~~p~~~~avafaRR-----PG~~~~v~D~~~g~~~~~~~a~~gR---HFyGHg~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 1 IPLPARGHGVAAHPTRPEAVAFARR-----PGTFALVFDCRTGQLLQRLWAPPGR---HFYGHGVFSPDGRLLYTTENDY 72 (305)
T ss_pred CCCCccccceeeCCCCCeEEEEEeC-----CCcEEEEEEcCCCceeeEEcCCCCC---EEecCEEEcCCCCEEEEecccc
Q ss_pred --CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCE--EEEEcC
Q 016421 296 --LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNE--LLVVGG 342 (390)
Q Consensus 296 --~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~--lyv~GG 342 (390)
..+.|-+||.. +...++..++...... +-+....+. |+|--|
T Consensus 73 ~~g~G~IgVyd~~-~~~~ri~E~~s~GIGP----Hel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 73 ETGRGVIGVYDAA-RGYRRIGEFPSHGIGP----HELLLMPDGETLVVANG 118 (305)
T ss_pred CCCcEEEEEEECc-CCcEEEeEecCCCcCh----hhEEEcCCCCEEEEEcC
No 215
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.08 E-value=3.9e+02 Score=27.33 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=61.0
Q ss_pred EECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEE-EECCEEEEEecCCCeEEEEeCCCCce
Q 016421 232 FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVA-VVDNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 232 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
.+-+.=|+++|... ..|-.+|..++.=.++-.-- .+...+++ ...|+-.+-|+..+.|..||..+..
T Consensus 543 FHPNs~Y~aTGSsD-----~tVRlWDv~~G~~VRiF~GH------~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~- 610 (707)
T KOG0263|consen 543 FHPNSNYVATGSSD-----RTVRLWDVSTGNSVRIFTGH------KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS- 610 (707)
T ss_pred ECCcccccccCCCC-----ceEEEEEcCCCcEEEEecCC------CCceEEEEEcCCCceEeecccCCcEEEEEcCCCc-
Confidence 45677788877432 34666788777654433211 11111222 3467766667778899999988754
Q ss_pred EEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 311 DVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 311 ~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
.+..+... +. ..+.. ....+|.+++.||.+. +|.+||...
T Consensus 611 -~v~~l~~H-t~-ti~Sl-sFS~dg~vLasgg~Dn------sV~lWD~~~ 650 (707)
T KOG0263|consen 611 -LVKQLKGH-TG-TIYSL-SFSRDGNVLASGGADN------SVRLWDLTK 650 (707)
T ss_pred -chhhhhcc-cC-ceeEE-EEecCCCEEEecCCCC------eEEEEEchh
Confidence 22233222 10 11112 2245889999998663 577888765
No 216
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.00 E-value=5.4e+02 Score=26.43 Aligned_cols=106 Identities=18% Similarity=0.164 Sum_probs=58.3
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcC-ceEEE-ECCEEEEEecccCCCccCceEEEEeCCCC
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRL-CSGFF-MDGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
..-+.-|++.|.. ...|-.+|..++.-..+= ...... .+.+. .+|+..+.|+.+ ..|..||+.+.
T Consensus 543 FHPNs~Y~aTGSs-----D~tVRlWDv~~G~~VRiF--~GH~~~V~al~~Sp~Gr~LaSg~ed------~~I~iWDl~~~ 609 (707)
T KOG0263|consen 543 FHPNSNYVATGSS-----DRTVRLWDVSTGNSVRIF--TGHKGPVTALAFSPCGRYLASGDED------GLIKIWDLANG 609 (707)
T ss_pred ECCcccccccCCC-----CceEEEEEcCCCcEEEEe--cCCCCceEEEEEcCCCceEeecccC------CcEEEEEcCCC
Confidence 3357788888743 345777888877654431 112111 12222 255544444432 24667888775
Q ss_pred ceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCC
Q 016421 262 KWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLK 307 (390)
Q Consensus 262 ~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~ 307 (390)
+= +..+.... .--.......+|.+++.||.-+.|..||...
T Consensus 610 ~~--v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 610 SL--VKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cc--hhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 42 11111110 1011123457899999999999999998754
No 217
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=33.47 E-value=3.9e+02 Score=24.70 Aligned_cols=241 Identities=14% Similarity=0.153 Sum_probs=112.1
Q ss_pred cEEEEEeC-----CCeeEEEecCCCceeeCCCCCCCcccCCCCeeEEEe-CCEEEEEcccccCCeEEEEECCCC-c-E--
Q 016421 98 HWVYLVCD-----PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAV-GSELLVFGRELFDFAIWKYSLVFR-S-W-- 167 (390)
Q Consensus 98 ~~l~~~~~-----~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~iy~~Gg~~~~~~~~~yd~~t~-~-W-- 167 (390)
..||++.. .-..+.+|+...+-..+...+.+-... + -+++ .++=|++........+.+|-..++ . |
T Consensus 52 ~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p-~---yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~ 127 (346)
T COG2706 52 RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP-C---YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPV 127 (346)
T ss_pred CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC-e---EEEECCCCCEEEEEEccCceEEEEEcccCCccccc
Confidence 45777641 234455677666666554333221111 1 2333 233344444444556666655442 1 1
Q ss_pred ----eecCCCCCCC-----cceeeeeeCC-EEEEEeccCCCCCccceEEEEECCCCcEEEcCCCC-CCCcCce-EEEE-C
Q 016421 168 ----MKCEGMNHPR-----CLFGSGSLGS-IAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMH-SPRRLCS-GFFM-D 234 (390)
Q Consensus 168 ----~~~~~~~~~r-----~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~-~~~~-~ 234 (390)
.....-|.+| ..+....-++ .|++.- . -...+..|+...+.-+...+.- .+-.+.. .+.+ +
T Consensus 128 v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-L-----G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn 201 (346)
T COG2706 128 VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD-L-----GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPN 201 (346)
T ss_pred eeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-c-----CCceEEEEEcccCccccccccccCCCCCcceEEEcCC
Confidence 1112223344 2222222244 444441 1 1456889999877765543221 1222222 3333 4
Q ss_pred C-EEEEEecccCCCccCceEEEEeCCCCceEEccCC---CCCCCCcCCCCCEE-EEECCE-EEEEecCCCeEEEE--eCC
Q 016421 235 G-KFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGM---YPNVNRAAQAPPLV-AVVDNQ-LYAVEYLTNMVKKY--DKL 306 (390)
Q Consensus 235 ~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~-~~~~g~-l~v~gg~~~~v~~y--d~~ 306 (390)
+ ..|++.--++ .-.++.||....+..+++.. |.... .....+.+ ...+|+ ||+-.-..+.|.+| |+.
T Consensus 202 ~k~aY~v~EL~s----tV~v~~y~~~~g~~~~lQ~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 202 GKYAYLVNELNS----TVDVLEYNPAVGKFEELQTIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred CcEEEEEeccCC----EEEEEEEcCCCceEEEeeeeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 4 4688854332 33567788888888887653 33211 11111112 223554 66665555677777 666
Q ss_pred CCceEEccCCCcc-ccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 307 KNTWDVLGRLPVR-ADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 307 ~~~W~~v~~~~~~-~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
++.-+.+..-+.. ...|. ..+ ..++++.++-+.++++ -.++.-|+++
T Consensus 277 ~g~L~~~~~~~teg~~PR~---F~i-~~~g~~Liaa~q~sd~---i~vf~~d~~T 324 (346)
T COG2706 277 GGKLELVGITPTEGQFPRD---FNI-NPSGRFLIAANQKSDN---ITVFERDKET 324 (346)
T ss_pred CCEEEEEEEeccCCcCCcc---cee-CCCCCEEEEEccCCCc---EEEEEEcCCC
Confidence 6654444433322 11221 222 2345555555544322 2355556666
No 218
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=33.38 E-value=2.9e+02 Score=23.14 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=40.5
Q ss_pred ccceEEEEECCCCcEEEcCCCCCC-CcCce-EEEE-CCEEE-EEecccCCCccCceEEEEeCCCCceEEccCCCC
Q 016421 201 VLKSAELYDSTTGRWEMLPSMHSP-RRLCS-GFFM-DGKFY-VIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP 271 (390)
Q Consensus 201 ~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~-~~~~-~~~iy-v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 271 (390)
..-.++++|..++.|..+.--+.. .+.+- +.-+ +..|. ++|...+....-..++.|++.++.=..+-....
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~d 160 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKD 160 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccc
Confidence 467799999999988654211211 22222 2234 34444 444222222223468999999999888776544
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=33.35 E-value=2.9e+02 Score=23.08 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=35.3
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTG 213 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 213 (390)
++.+.++-|.. ...+.+||.....-..++ ........-.-+|+..++||.... .-.+.+||..+.
T Consensus 71 g~~favi~g~~-~~~v~lyd~~~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~~wd~~~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSM-PAKVTLYDVKGKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNL---NGDLEFWDVRKK 135 (194)
T ss_pred CCEEEEEEccC-CcccEEEcCcccEeEeec---CCCceEEEECCCCCEEEEEEccCC---CcEEEEEECCCC
Confidence 45666665533 347888998643333332 211111112236778888876432 245888998733
No 220
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=32.58 E-value=1e+02 Score=17.72 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=15.6
Q ss_pred EEEEEecCCCeEEEEeCCCCc--eEEcc
Q 016421 289 QLYAVEYLTNMVKKYDKLKNT--WDVLG 314 (390)
Q Consensus 289 ~l~v~gg~~~~v~~yd~~~~~--W~~v~ 314 (390)
.+|+- ...+.++.+|..+++ |+.-.
T Consensus 2 ~v~~~-~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVG-TPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEE-TTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEe-CCCCEEEEEECCCCCEEEeeeC
Confidence 44444 555677778877764 76643
No 221
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=30.98 E-value=3.8e+02 Score=23.79 Aligned_cols=154 Identities=19% Similarity=0.269 Sum_probs=76.2
Q ss_pred ceeeeeeCCEEEEEecc-CCCCCccceEEEEE---CCCCcEEE--cCCCCC-------CCcCceEEEECCEEEEEecccC
Q 016421 179 LFGSGSLGSIAIIAGGS-DKNGHVLKSAELYD---STTGRWEM--LPSMHS-------PRRLCSGFFMDGKFYVIGGMSS 245 (390)
Q Consensus 179 ~~~~~~~~~~lyv~GG~-~~~~~~~~~~~~yd---~~t~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~~ 245 (390)
++++.++++++|.+--. .-.+..+...+.|| ...+.|+. ++..+. ...-|+.+.+++.=|.+|=+++
T Consensus 77 CmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnG 156 (367)
T PF12217_consen 77 CMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNG 156 (367)
T ss_dssp -B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-
T ss_pred eeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccC
Confidence 34777889999987542 22222355566666 45778965 333333 2234677788888888886655
Q ss_pred CCccCceEEEEeCCCCceE--------EccCCCCCCCCcCCCCCEEEEECCEEEEEec-----CC-CeEEEEeCCCCceE
Q 016421 246 PTVSLTCGEEFDLETRKWR--------KIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY-----LT-NMVKKYDKLKNTWD 311 (390)
Q Consensus 246 ~~~~~~~v~~yd~~~~~W~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg-----~~-~~v~~yd~~~~~W~ 311 (390)
...+..--..|= ++.|. .++.-- .. ..+-+++-..+|.||+... .. ..+.+=+.....|+
T Consensus 157 D~sPRe~G~~yf--s~~~~sp~~~vrr~i~sey-~~---~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~ 230 (367)
T PF12217_consen 157 DVSPRELGFLYF--SDAFASPGVFVRRIIPSEY-ER---NASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWS 230 (367)
T ss_dssp SSSS-EEEEEEE--TTTTT-TT--EEEE--GGG--T---TEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-E
T ss_pred CCCcceeeEEEe--cccccCCcceeeeechhhh-cc---ccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchh
Confidence 432222112221 11221 111110 11 1133567789999999952 12 35566666777899
Q ss_pred EccCCCccccCCCcceeEEEEeCCEEEEEcC
Q 016421 312 VLGRLPVRADLSNGWGLAFKACGNELLVVGG 342 (390)
Q Consensus 312 ~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG 342 (390)
.+.- |..... ........++.||+||.
T Consensus 231 slrf-p~nvHh---tnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 231 SLRF-PNNVHH---TNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EEE--TT---S---S---EEEETTEEEEEEE
T ss_pred hccc-cccccc---cCCCceeeCCEEEEEec
Confidence 8753 333221 12456688999999994
No 222
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=30.46 E-value=7.1e+02 Score=26.77 Aligned_cols=138 Identities=10% Similarity=0.114 Sum_probs=76.6
Q ss_pred CEEEEEeccC----CCCCccceEEEEECCC-CcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeCCCC
Q 016421 187 SIAIIAGGSD----KNGHVLKSAELYDSTT-GRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 187 ~~lyv~GG~~----~~~~~~~~~~~yd~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
+..|++|-.. .+....-.+.+|.... ++-+.+..+-..-...+.+.++|++.+-= -..+-.|+-.++
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~I--------n~~vrLye~t~~ 858 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGI--------NQSVRLYEWTTE 858 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEec--------CcEEEEEEcccc
Confidence 5677777421 1111223455554444 66666666555444455667788876642 234556766555
Q ss_pred ceEEccCCCCCCCCcCCCCC----EEEEECCEEEEEec-CCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCE
Q 016421 262 KWRKIEGMYPNVNRAAQAPP----LVAVVDNQLYAVEY-LTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNE 336 (390)
Q Consensus 262 ~W~~~~~~~~~~~~~~~~~~----~~~~~~g~l~v~gg-~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~ 336 (390)
+ .+.... ....+ .+-+.++.|++.+- .+-.+..|+...+...+++.=-.+ .|-.++-.+++.
T Consensus 859 ~-----eLr~e~---~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p-----~Wmtaveil~~d 925 (1096)
T KOG1897|consen 859 R-----ELRIEC---NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNP-----NWMTAVEILDDD 925 (1096)
T ss_pred c-----eehhhh---cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCc-----cceeeEEEecCc
Confidence 2 111111 11112 23345677777664 334678899999999998742222 355666678888
Q ss_pred EEEEcCCCC
Q 016421 337 LLVVGGQRG 345 (390)
Q Consensus 337 lyv~GG~~~ 345 (390)
.|+.+-..+
T Consensus 926 ~ylgae~~g 934 (1096)
T KOG1897|consen 926 TYLGAENSG 934 (1096)
T ss_pred eEEeecccc
Confidence 888776543
No 223
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.30 E-value=4.6e+02 Score=23.87 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=57.6
Q ss_pred cceEEEEECCCCc----EEEcCCCCCCCcCceE---E---EECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC
Q 016421 202 LKSAELYDSTTGR----WEMLPSMHSPRRLCSG---F---FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP 271 (390)
Q Consensus 202 ~~~~~~yd~~t~~----W~~~~~~~~~r~~~~~---~---~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 271 (390)
.+.+..||.+.++ |++-- ..+....+= . .+++++++.=+.. ..--.++..|.++..=+.+..-|.
T Consensus 77 YSHVH~yd~e~~~VrLLWkesi--h~~~~WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~~~~L~~~ps 151 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESI--HDKTKWAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGKAEKLSSNPS 151 (339)
T ss_pred cceEEEEEcCCCeEEEEEeccc--CCccccccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCceeeccCCCC
Confidence 5679999988886 76532 222222111 1 2467888864321 122347888889988888776555
Q ss_pred CCCCcCCCCCEEEEECCEEEEEe---cCCCeEEEEeCCCCce
Q 016421 272 NVNRAAQAPPLVAVVDNQLYAVE---YLTNMVKKYDKLKNTW 310 (390)
Q Consensus 272 ~~~~~~~~~~~~~~~~g~l~v~g---g~~~~v~~yd~~~~~W 310 (390)
.. ...+.+-..|-+- +....+++||..+++|
T Consensus 152 ~K--------G~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 152 LK--------GTLVHDYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred cC--------ceEeeeeEEEeccccccCCceEEEEEccCCeE
Confidence 21 1333444444331 2457899999999999
No 224
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.02 E-value=4.2e+02 Score=23.28 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.1
Q ss_pred ECCEEEEEecCCCeEEEEeCCCCceEEccCCCccc
Q 016421 286 VDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRA 320 (390)
Q Consensus 286 ~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~ 320 (390)
..|.||+.--..+.|+++||.+++--.--.+|.++
T Consensus 221 ~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 221 TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCc
Confidence 47889998766679999999998755434566655
No 225
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=27.72 E-value=4.7e+02 Score=23.76 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEEE------CCEEEEEecccCCCccCceEEEEeCC
Q 016421 186 GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFM------DGKFYVIGGMSSPTVSLTCGEEFDLE 259 (390)
Q Consensus 186 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~v~~yd~~ 259 (390)
++..++-||++.. .--.-+|.-..|.|..- +|++|+. ++...+-.|.+. .+..+|.+
T Consensus 58 ~gs~~aSgG~Dr~---I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtDk------~v~~wD~~ 120 (338)
T KOG0265|consen 58 DGSCFASGGSDRA---IVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTDK------TVRGWDAE 120 (338)
T ss_pred CCCeEeecCCcce---EEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCCc------eEEEEecc
Q ss_pred CCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEeCCEEEE
Q 016421 260 TRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLV 339 (390)
Q Consensus 260 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv 339 (390)
+++=..--..-....... ...-.+-.|..-|..-+.+..||..++.=.+...-+.... +....-.+.=.+
T Consensus 121 tG~~~rk~k~h~~~vNs~----~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqlt------Av~f~d~s~qv~ 190 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSL----DPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLT------AVGFKDTSDQVI 190 (338)
T ss_pred cceeeehhccccceeeec----CccccCCeEEEecCCCceEEEEeecccchhhccccceeEE------EEEeccccccee
Q ss_pred EcCCCCCCCCeEEEeeecC
Q 016421 340 VGGQRGPEGENVVLNSWCP 358 (390)
Q Consensus 340 ~GG~~~~~~~~~~i~~y~~ 358 (390)
.||.++ +|.+||+
T Consensus 191 sggIdn------~ikvWd~ 203 (338)
T KOG0265|consen 191 SGGIDN------DIKVWDL 203 (338)
T ss_pred eccccC------ceeeecc
No 226
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.33 E-value=4.9e+02 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=17.8
Q ss_pred eeeeeCCEEEEEeccCCCCCccceEEEEECCCCc
Q 016421 181 GSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGR 214 (390)
Q Consensus 181 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 214 (390)
.++++++...+-||.+ .++.+||..++.
T Consensus 47 tavAVs~~~~aSGssD------etI~IYDm~k~~ 74 (362)
T KOG0294|consen 47 TALAVSGPYVASGSSD------ETIHIYDMRKRK 74 (362)
T ss_pred eEEEecceeEeccCCC------CcEEEEeccchh
Confidence 4455566555555543 348999998765
No 227
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=26.62 E-value=5.9e+02 Score=24.61 Aligned_cols=150 Identities=14% Similarity=0.078 Sum_probs=74.2
Q ss_pred eCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE---E
Q 016421 141 VGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE---M 217 (390)
Q Consensus 141 ~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~---~ 217 (390)
..+.+++.|+. +..+.++|..+.+-...-.............-++.+++.+.++ ..+.+||..++.-. .
T Consensus 256 p~g~~i~Sgs~--D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~ 327 (456)
T KOG0266|consen 256 PDGNLLVSGSD--DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGSKLCLKL 327 (456)
T ss_pred CCCCEEEEecC--CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCceeeeec
Confidence 34567777764 4578888988854433211111111111122256677766543 34889999888733 2
Q ss_pred cCCCCCCCcCceEE-EECCEEEEEecccCCCccCceEEEEeCCCCceEEc-cCCCCCCCCcCCCC-CEEEEECCEEEEEe
Q 016421 218 LPSMHSPRRLCSGF-FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI-EGMYPNVNRAAQAP-PLVAVVDNQLYAVE 294 (390)
Q Consensus 218 ~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~-~~~~~~~g~l~v~g 294 (390)
+.....+. ....+ ...+-.|++.+..+ +.+-.+|+....-... ....... ++. ......+++..+.|
T Consensus 328 ~~~~~~~~-~~~~~~fsp~~~~ll~~~~d-----~~~~~w~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~sg 397 (456)
T KOG0266|consen 328 LSGAENSA-PVTSVQFSPNGKYLLSASLD-----RTLKLWDLRSGKSVGTYTGHSNLV----RCIFSPTLSTGGKLIYSG 397 (456)
T ss_pred ccCCCCCC-ceeEEEECCCCcEEEEecCC-----CeEEEEEccCCcceeeecccCCcc----eeEecccccCCCCeEEEE
Confidence 32222222 22223 33444455544332 1233455554322111 1111110 011 11224577888888
Q ss_pred cCCCeEEEEeCCCC
Q 016421 295 YLTNMVKKYDKLKN 308 (390)
Q Consensus 295 g~~~~v~~yd~~~~ 308 (390)
..-..|+.||+.+.
T Consensus 398 ~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 398 SEDGSVYVWDSSSG 411 (456)
T ss_pred eCCceEEEEeCCcc
Confidence 88889999999873
No 228
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=26.60 E-value=69 Score=29.39 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=33.2
Q ss_pred CCCCCChHHHHHHHhhhcc--------ccchhhhHhhcHHHHHHhhc
Q 016421 45 SLLPGLVDDVALNCLAFAC--------TSDYASLLFINKRFHKLIKS 83 (390)
Q Consensus 45 ~~~~~LP~dl~~~iL~rlp--------~~~l~~~~~V~k~w~~l~~s 83 (390)
..|..||.+++.+|+-++- .++......||+.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 6899999999999999964 34678888999999987655
No 229
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=25.53 E-value=5.2e+02 Score=23.61 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=64.4
Q ss_pred ceEEEECCEEEEEeccc-C---CCccCceEEEE-eCCCCceEEccCCC---CCCCCcCCCCCEEEEECCEEEEEec-CCC
Q 016421 228 CSGFFMDGKFYVIGGMS-S---PTVSLTCGEEF-DLETRKWRKIEGMY---PNVNRAAQAPPLVAVVDNQLYAVEY-LTN 298 (390)
Q Consensus 228 ~~~~~~~~~iyv~GG~~-~---~~~~~~~v~~y-d~~~~~W~~~~~~~---~~~~~~~~~~~~~~~~~g~l~v~gg-~~~ 298 (390)
++.+.++|.|+.+.... . .......+..| .....+|....... ..........|..++.++.||++-| +..
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 46778899999887432 2 11122222334 34556897643211 1111111124567788999999954 211
Q ss_pred -------eEEEE--eCCCCceEEccCCCcccc-----CCCcceeEEEEeCCEE-EEEcCCCCCCCCeEEEeeecCCCCCC
Q 016421 299 -------MVKKY--DKLKNTWDVLGRLPVRAD-----LSNGWGLAFKACGNEL-LVVGGQRGPEGENVVLNSWCPKSGVN 363 (390)
Q Consensus 299 -------~v~~y--d~~~~~W~~v~~~~~~~~-----~~~~~~~~~~~~~~~l-yv~GG~~~~~~~~~~i~~y~~~~~~~ 363 (390)
.+..+ +....+|.....++.... ...+-|.+++.-+|.| |=+-+.........++.+|..+++
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g-- 159 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDG-- 159 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTT--
T ss_pred cccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCc--
Confidence 23333 223346988766654321 1111233333334443 223333333322356778888754
Q ss_pred CCCCceEEecccCccCeEEe
Q 016421 364 NGTLDWKVLAEKQHVGVFVY 383 (390)
Q Consensus 364 ~~~~~W~~~~~~p~~~~~~~ 383 (390)
.+|+--..+++.+.+..
T Consensus 160 ---~~W~lskg~s~~gC~~p 176 (310)
T PF13859_consen 160 ---KTWKLSKGMSPAGCSDP 176 (310)
T ss_dssp ---SS-EE-S----TT-EEE
T ss_pred ---cceEeccccCCCCcceE
Confidence 68998877776555433
No 230
>PTZ00486 apyrase Superfamily; Provisional
Probab=25.18 E-value=5.6e+02 Score=23.82 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=36.9
Q ss_pred EEEEECCEEEEEecCCCeEEEEeCCCCc---eEEccCCCcc-ccCCCcceeEEEEeCCEEEE
Q 016421 282 LVAVVDNQLYAVEYLTNMVKKYDKLKNT---WDVLGRLPVR-ADLSNGWGLAFKACGNELLV 339 (390)
Q Consensus 282 ~~~~~~g~l~v~gg~~~~v~~yd~~~~~---W~~v~~~~~~-~~~~~~~~~~~~~~~~~lyv 339 (390)
-+++++|+||.++-.++-|+..+.+.++ |..+++-... ..... +--+++-+++|||
T Consensus 119 ELv~FngkLys~DDrTGiVy~i~~~~~~~~PwvIL~dGdG~~~kGfK--~EWaTVKd~~LyV 178 (352)
T PTZ00486 119 ELVSFNGKLYGFDDRTGIVYEIDIDKKKAYPRHILSDGNGNSDKGMK--IEWATVYDDKLYV 178 (352)
T ss_pred hhheeCCEEEEEeCCceEEEEEEcCCCcEeeEEEEecCCCCCCCCcc--eeeEEEECCEEEE
Confidence 4678999999999988888888766653 7777643221 11111 1123457899998
No 231
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=24.59 E-value=6.4e+02 Score=24.31 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=17.4
Q ss_pred EeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 332 ACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 332 ~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
..++.+.+.|+.++ .+.+||+.+
T Consensus 286 s~DgtlLlSGd~dg------~VcvWdi~S 308 (476)
T KOG0646|consen 286 STDGTLLLSGDEDG------KVCVWDIYS 308 (476)
T ss_pred ecCccEEEeeCCCC------CEEEEecch
Confidence 45899999998775 366777765
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=24.31 E-value=4.2e+02 Score=22.07 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecC---CCeEEEEeCCCCce
Q 016421 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYL---TNMVKKYDKLKNTW 310 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~---~~~v~~yd~~~~~W 310 (390)
+.++.++-|... ..+..||++... +..++.. ......-.-+|++++++|. .+.+..||.. ++
T Consensus 71 g~~favi~g~~~-----~~v~lyd~~~~~---i~~~~~~-----~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSMP-----AKVTLYDVKGKK---IFSFGTQ-----PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--KK 135 (194)
T ss_pred CCEEEEEEccCC-----cccEEEcCcccE---eEeecCC-----CceEEEECCCCCEEEEEEccCCCcEEEEEECC--CC
Confidence 456666655321 257779886333 2222221 0111122346777777653 4679999987 45
Q ss_pred EEccCC
Q 016421 311 DVLGRL 316 (390)
Q Consensus 311 ~~v~~~ 316 (390)
..+...
T Consensus 136 ~~i~~~ 141 (194)
T PF08662_consen 136 KKISTF 141 (194)
T ss_pred EEeecc
Confidence 555443
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.76 E-value=6.1e+02 Score=23.77 Aligned_cols=137 Identities=15% Similarity=0.066 Sum_probs=66.5
Q ss_pred CCeEEEEECCCCcE-eecCCCCCCCcceeeeee---CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCce
Q 016421 154 DFAIWKYSLVFRSW-MKCEGMNHPRCLFGSGSL---GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCS 229 (390)
Q Consensus 154 ~~~~~~yd~~t~~W-~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~ 229 (390)
.+.+.+.|..+++- ..++.. ...|....+ +..+|+.+. + ..+.++|+.+++ .+...+......+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~r-d------g~vsviD~~~~~--~v~~i~~G~~~~~ 82 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANR-D------GTVSVIDLATGK--VVATIKVGGNPRG 82 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEET-T------SEEEEEETTSSS--EEEEEE-SSEEEE
T ss_pred CCEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcC-C------CeEEEEECCccc--EEEEEecCCCcce
Confidence 35788889888763 333332 122443332 467999852 2 358899999887 3333344433333
Q ss_pred EE-EECCEEEEEecccCCCccCceEEEEeCCCCceE-Ecc--CCCCCCCCcCCCCCEEEEECCEEEEEe-cCCCeEEEEe
Q 016421 230 GF-FMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWR-KIE--GMYPNVNRAAQAPPLVAVVDNQLYAVE-YLTNMVKKYD 304 (390)
Q Consensus 230 ~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~v~g-g~~~~v~~yd 304 (390)
.+ .-+|+..+++.+. ...+.++|.++.+=. .++ .++... ..+|-....+...+..|++. ...+.++..|
T Consensus 83 i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDG-PESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTT-S---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccc-cCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 33 3477655555442 346778998876432 222 122111 11111111122345556664 3467888888
Q ss_pred CCCC
Q 016421 305 KLKN 308 (390)
Q Consensus 305 ~~~~ 308 (390)
....
T Consensus 157 y~d~ 160 (369)
T PF02239_consen 157 YSDP 160 (369)
T ss_dssp TTTS
T ss_pred eccc
Confidence 6554
No 234
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=23.28 E-value=3.2e+02 Score=25.20 Aligned_cols=74 Identities=19% Similarity=0.382 Sum_probs=42.6
Q ss_pred EEEEEecCCCeEEEEeCCCCc-eEEccCCCccccCCCcceeEEEEe-CCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCC
Q 016421 289 QLYAVEYLTNMVKKYDKLKNT-WDVLGRLPVRADLSNGWGLAFKAC-GNELLVVGGQRGPEGENVVLNSWCPKSGVNNGT 366 (390)
Q Consensus 289 ~l~v~gg~~~~v~~yd~~~~~-W~~v~~~~~~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~ 366 (390)
...+++-+.+.+.+||+.+.+ -+++...|.... +.++... ..+.++.++.++ .|.+||+.+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N-----~vrf~~~ds~h~v~s~ssDG------~Vr~wD~Rs~~e~a~ 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTN-----GVRFISCDSPHGVISCSSDG------TVRLWDIRSQAESAR 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCccc-----ceEEecCCCCCeeEEeccCC------eEEEEEeecchhhhh
Confidence 445566677899999998854 333433332211 1333222 345555665554 588999987544444
Q ss_pred CceEEec
Q 016421 367 LDWKVLA 373 (390)
Q Consensus 367 ~~W~~~~ 373 (390)
..|+.-+
T Consensus 110 ~~~~~~~ 116 (376)
T KOG1188|consen 110 ISWTQQS 116 (376)
T ss_pred eeccCCC
Confidence 5576655
No 235
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=23.24 E-value=3.8e+02 Score=24.47 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=35.9
Q ss_pred EECCEEEEEecCCCeEEEEeCCCCceEEccCCCccccCCCcceeEEEEe--CCEEEEEcCCCC
Q 016421 285 VVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKAC--GNELLVVGGQRG 345 (390)
Q Consensus 285 ~~~g~l~v~gg~~~~v~~yd~~~~~W~~v~~~~~~~~~~~~~~~~~~~~--~~~lyv~GG~~~ 345 (390)
.-.|...++|-.-..+..||.++-+--.-+. |..... .+...|-+ .++||+.|-.++
T Consensus 225 HPsGefllvgTdHp~~rlYdv~T~Qcfvsan-Pd~qht---~ai~~V~Ys~t~~lYvTaSkDG 283 (430)
T KOG0640|consen 225 HPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-PDDQHT---GAITQVRYSSTGSLYVTASKDG 283 (430)
T ss_pred cCCCceEEEecCCCceeEEeccceeEeeecC-cccccc---cceeEEEecCCccEEEEeccCC
Confidence 3457778888777788999999877554333 433221 11222333 678999997665
No 236
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=23.19 E-value=3.4e+02 Score=26.49 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=38.3
Q ss_pred CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016421 234 DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 234 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
||+-.++||. ..++-++|+.+-+=+.-+.++. .+.-+.+.++..+.++..--...+.|.+||.....
T Consensus 476 dgrtLivGGe------astlsiWDLAapTprikaelts---sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 476 DGRTLIVGGE------ASTLSIWDLAAPTPRIKAELTS---SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred CCceEEeccc------cceeeeeeccCCCcchhhhcCC---cchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 8888899986 3345557776654433232222 11223333444555655444455779999987765
No 237
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=23.19 E-value=6.8e+02 Score=24.09 Aligned_cols=109 Identities=14% Similarity=-0.035 Sum_probs=61.3
Q ss_pred cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEcCCCCCCCcCceEEE
Q 016421 153 FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFF 232 (390)
Q Consensus 153 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 232 (390)
...++|.+|..+++-..+......-...+...-+.+|+..-...+ ...+++||+....=+.+..-.... ..-...
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~~~~-~~p~~S 334 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSGGGN-SNPVWS 334 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEeeccCCCC-cCccCC
Confidence 456899999998874444443332232333333455555533222 247999999888765553221111 122334
Q ss_pred ECCEEEEEecccCCCccCceEEEEeCCCCc-eEEccCC
Q 016421 233 MDGKFYVIGGMSSPTVSLTCGEEFDLETRK-WRKIEGM 269 (390)
Q Consensus 233 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~ 269 (390)
-+|+.+++-+... +. ..+..+|+.++. |+.+..-
T Consensus 335 pdG~~i~~~~~~~-g~--~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 335 PDGDKIVFESSSG-GQ--WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred CCCCEEEEEeccC-Cc--eeeEEeccCCCCcEEEcccc
Confidence 4666666555432 11 567889998877 8877643
No 238
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=23.08 E-value=6.9e+02 Score=24.10 Aligned_cols=145 Identities=12% Similarity=0.089 Sum_probs=74.1
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceee-eee--CCEEEEEeccCCCCCccceEEEEECCCCcE
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGS-GSL--GSIAIIAGGSDKNGHVLKSAELYDSTTGRW 215 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~-~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 215 (390)
+..+++.+++||. .+.+.+||+.|..-... +...|..... +.. .+.+|..+- ..++-+++....+.
T Consensus 210 vS~Dgkylatgg~--d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~-------Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 210 VSSDGKYLATGGR--DRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA-------DRSVKVWSIDQLSY 278 (479)
T ss_pred EcCCCcEEEecCC--CceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec-------CCceEEEehhHhHH
Confidence 3457888888884 45677888877654332 3333432222 222 245666531 23345555443322
Q ss_pred EEcCCCCCCCcCceE--EEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEE
Q 016421 216 EMLPSMHSPRRLCSG--FFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAV 293 (390)
Q Consensus 216 ~~~~~~~~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~ 293 (390)
. ..+-.....-.. +.-.++...+||.+. ++..|++...+ +.+-. +. ..+.-+++.++..=|+.
T Consensus 279 v--etlyGHqd~v~~IdaL~reR~vtVGgrDr------T~rlwKi~ees-qlifr-g~-----~~sidcv~~In~~Hfvs 343 (479)
T KOG0299|consen 279 V--ETLYGHQDGVLGIDALSRERCVTVGGRDR------TVRLWKIPEES-QLIFR-GG-----EGSIDCVAFINDEHFVS 343 (479)
T ss_pred H--HHHhCCccceeeechhcccceEEeccccc------eeEEEeccccc-eeeee-CC-----CCCeeeEEEecccceee
Confidence 1 111111111111 122567888888764 23345442221 11110 00 11223577888888999
Q ss_pred ecCCCeEEEEeCCCCc
Q 016421 294 EYLTNMVKKYDKLKNT 309 (390)
Q Consensus 294 gg~~~~v~~yd~~~~~ 309 (390)
|+..+.|..|+..+++
T Consensus 344 GSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKK 359 (479)
T ss_pred ccCCceEEEeeecccC
Confidence 9888889888877765
No 239
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=22.68 E-value=7.4e+02 Score=24.35 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=51.7
Q ss_pred EEeCCEEEEEcccccCCeEEEEECCCCcEeecCCCCC--CCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEE
Q 016421 139 LAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNH--PRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWE 216 (390)
Q Consensus 139 ~~~~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 216 (390)
+..++.-+++||+ ...+.++|..+-+-+.-..++. +-+..-++..+.++....=.+ -.+.+||+...+-
T Consensus 473 L~pdgrtLivGGe--astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd------GnI~vwDLhnq~~- 543 (705)
T KOG0639|consen 473 LLPDGRTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD------GNIAVWDLHNQTL- 543 (705)
T ss_pred ecCCCceEEeccc--cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC------CcEEEEEccccee-
Confidence 3446777788887 3467778877655444344433 222222233455554432222 2378888875543
Q ss_pred EcCCCCCCCcCceEEEE--CCEEEEEecccC
Q 016421 217 MLPSMHSPRRLCSGFFM--DGKFYVIGGMSS 245 (390)
Q Consensus 217 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 245 (390)
+..++....+.++..+ +|.=.+.||-++
T Consensus 544 -VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 544 -VRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred -eecccCCCCCceeEEecCCCceeecCCCcc
Confidence 2344444445555544 466666677653
No 240
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=22.66 E-value=6.8e+02 Score=23.89 Aligned_cols=123 Identities=18% Similarity=0.247 Sum_probs=69.2
Q ss_pred ECCEEEEEecccCCCccCceEEEEeCCCCceEEc-cCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCceE
Q 016421 233 MDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKI-EGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWD 311 (390)
Q Consensus 233 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~W~ 311 (390)
.+|.+...||.+..+ -++|+.+..-.-+ +....+. ......-+|.....|+.-+.+-+||....+=
T Consensus 313 ~DGSL~~tGGlD~~~------RvWDlRtgr~im~L~gH~k~I------~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~- 379 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLG------RVWDLRTGRCIMFLAGHIKEI------LSVAFSPNGYHLATGSSDNTCKVWDLRMRSE- 379 (459)
T ss_pred CCCceeeccCccchh------heeecccCcEEEEecccccce------eeEeECCCceEEeecCCCCcEEEeeeccccc-
Confidence 589999999987532 2367776654321 2111100 0012234677777888888889999766542
Q ss_pred EccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCCCCCCCCCceEEecccCccCeEEeee
Q 016421 312 VLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNC 385 (390)
Q Consensus 312 ~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 385 (390)
+..||......+ ....-...|+..+.++++. .+.+|... +|..++.+.....-+.+|
T Consensus 380 -ly~ipAH~nlVS--~Vk~~p~~g~fL~TasyD~------t~kiWs~~--------~~~~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 380 -LYTIPAHSNLVS--QVKYSPQEGYFLVTASYDN------TVKIWSTR--------TWSPLKSLAGHEGKVISL 436 (459)
T ss_pred -ceecccccchhh--heEecccCCeEEEEcccCc------ceeeecCC--------CcccchhhcCCccceEEE
Confidence 334443221110 0111113577788888764 36678774 599888886555555444
No 241
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=22.51 E-value=6.6e+02 Score=25.50 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=52.2
Q ss_pred ceEEEEECCCCcEEEc-CCCCCC-CcCceEEEECCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCC
Q 016421 203 KSAELYDSTTGRWEML-PSMHSP-RRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 203 ~~~~~yd~~t~~W~~~-~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
..+.+|+|.+..=... ..-|.. |...-.-+++|++.++-|.+... ...+..||-++-.-..+........... ..
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S--eRQv~~Y~Aq~l~~~pl~t~~lDvaps~-Lv 818 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS--ERQVQMYDAQTLDLRPLYTQVLDVAPSP-LV 818 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc--hhhhhhhhhhhccCCcceeeeecccCcc-cc
Confidence 3588999987763211 122332 33233347899999999988653 3456678777644322211100000000 00
Q ss_pred CEEEEECCEEEEEecCCCeEEEEeCCCC
Q 016421 281 PLVAVVDNQLYAVEYLTNMVKKYDKLKN 308 (390)
Q Consensus 281 ~~~~~~~g~l~v~gg~~~~v~~yd~~~~ 308 (390)
+.--.-.+.+++.|..-..|++|.....
T Consensus 819 P~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 819 PHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ccccCCCceEEEecCCCceEEEEEecCC
Confidence 0011122556666765667777765433
No 242
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=22.49 E-value=2.3e+02 Score=25.92 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCCCcce-eeeeeCCEE-EEE--e------ccCCCCCccceEEEEECCCCcEEEc-CCCCC-CCcCceEEEECCEEEEEe
Q 016421 174 NHPRCLF-GSGSLGSIA-IIA--G------GSDKNGHVLKSAELYDSTTGRWEML-PSMHS-PRRLCSGFFMDGKFYVIG 241 (390)
Q Consensus 174 ~~~r~~~-~~~~~~~~l-yv~--G------G~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~-~r~~~~~~~~~~~iyv~G 241 (390)
|..|+.. +++..+++. ||. | |+... ..+.-.+.|..+++=-.- =.||. || -++|++|+.-
T Consensus 148 ~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~--~~~gG~vidv~s~evl~~GLsmPhSPR------WhdgrLwvld 219 (335)
T TIGR03032 148 PEDRCHLNGMALDDGEPRYVTALSQSDVADGWREG--RRDGGCVIDIPSGEVVASGLSMPHSPR------WYQGKLWLLN 219 (335)
T ss_pred ccCceeecceeeeCCeEEEEEEeeccCCccccccc--ccCCeEEEEeCCCCEEEcCccCCcCCc------EeCCeEEEEE
Confidence 4556554 666666644 332 2 22111 233445567777753211 12332 33 4789999983
Q ss_pred cccCCCccCceEEEEeCCCCceEEccCCCCCCCCcCCCCCEEEEECCEEEEEec
Q 016421 242 GMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEY 295 (390)
Q Consensus 242 G~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg 295 (390)
. ....+..+|+.+++...++..|... .+++.. |.+.++|-
T Consensus 220 s------gtGev~~vD~~~G~~e~Va~vpG~~-------rGL~f~-G~llvVgm 259 (335)
T TIGR03032 220 S------GRGELGYVDPQAGKFQPVAFLPGFT-------RGLAFA-GDFAFVGL 259 (335)
T ss_pred C------CCCEEEEEcCCCCcEEEEEECCCCC-------ccccee-CCEEEEEe
Confidence 2 3456888999999999998777621 124444 67677764
No 243
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.44 E-value=6e+02 Score=23.21 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=21.6
Q ss_pred CEEEEEecC-------CCeEEEEeCCCCceEEccCCCc
Q 016421 288 NQLYAVEYL-------TNMVKKYDKLKNTWDVLGRLPV 318 (390)
Q Consensus 288 g~l~v~gg~-------~~~v~~yd~~~~~W~~v~~~~~ 318 (390)
..++++|.. .-.|+.|+-..++|.+++.++.
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 346777642 2356777888889999987764
No 244
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=22.34 E-value=5.3e+02 Score=22.50 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=69.3
Q ss_pred eeCCEEEEEeccCCCCCccceEEEEECCCC-cEEEcCCCCCC-CcC-ceEEEE-CCEEEEEecccCCCccCceEEEEeCC
Q 016421 184 SLGSIAIIAGGSDKNGHVLKSAELYDSTTG-RWEMLPSMHSP-RRL-CSGFFM-DGKFYVIGGMSSPTVSLTCGEEFDLE 259 (390)
Q Consensus 184 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~-r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~ 259 (390)
.-++.+++.. +............|+...+ +|+.....+.. ... .+.+.. +|+|+++.-.. ... ...+.+...
T Consensus 116 ~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D 191 (275)
T PF13088_consen 116 LPDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTD 191 (275)
T ss_dssp ECTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESS
T ss_pred ecCCCEEEEE-eeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECC
Confidence 3477888772 2111112344555665544 69887655322 222 222333 77999886553 111 222333322
Q ss_pred -CCceEEcc--CCCCCCCCcCCCCCEEEE-ECCEEEEEecC---CCeEEE-Ee-CCCCceEEccCCCccccCCCcceeEE
Q 016421 260 -TRKWRKIE--GMYPNVNRAAQAPPLVAV-VDNQLYAVEYL---TNMVKK-YD-KLKNTWDVLGRLPVRADLSNGWGLAF 330 (390)
Q Consensus 260 -~~~W~~~~--~~~~~~~~~~~~~~~~~~-~~g~l~v~gg~---~~~v~~-yd-~~~~~W~~v~~~~~~~~~~~~~~~~~ 330 (390)
-.+|+... .++.. .....+.. -+|+++++... ...+.. +. -...+|.....+........+|...+
T Consensus 192 ~G~TWs~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~ 266 (275)
T PF13088_consen 192 GGRTWSPPQPTNLPNP-----NSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLT 266 (275)
T ss_dssp TTSS-EEEEEEECSSC-----CEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEE
T ss_pred CCCcCCCceecccCcc-----cCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeE
Confidence 34799754 22321 11112222 35788877652 122333 23 33678998765554432222343333
Q ss_pred EEeCCEEEE
Q 016421 331 KACGNELLV 339 (390)
Q Consensus 331 ~~~~~~lyv 339 (390)
..-+|+|||
T Consensus 267 ~~~dg~l~i 275 (275)
T PF13088_consen 267 QLPDGKLYI 275 (275)
T ss_dssp EEETTEEEE
T ss_pred EeCCCcCCC
Confidence 333679886
No 245
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.26 E-value=1.4e+02 Score=15.84 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=14.0
Q ss_pred ECCEEEEEecCCCeEEEE
Q 016421 286 VDNQLYAVEYLTNMVKKY 303 (390)
Q Consensus 286 ~~g~l~v~gg~~~~v~~y 303 (390)
-+|.||+.+.....|++|
T Consensus 11 ~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 11 SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp TTSEEEEEECCCTEEEEE
T ss_pred CCCCEEEEECCCCEEEEC
Confidence 678999998766777765
No 246
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=22.22 E-value=54 Score=23.86 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.3
Q ss_pred CCCCCCChHHHHHHHhhhccccchhh
Q 016421 44 DSLLPGLVDDVALNCLAFACTSDYAS 69 (390)
Q Consensus 44 ~~~~~~LP~dl~~~iL~rlp~~~l~~ 69 (390)
...|..||.|+-..||..|.-.+|..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHH
Confidence 46799999999999999999876654
No 247
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=22.12 E-value=1.7e+02 Score=16.72 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=18.0
Q ss_pred CCEEEEEecCCCeEEEEeCCCCce
Q 016421 287 DNQLYAVEYLTNMVKKYDKLKNTW 310 (390)
Q Consensus 287 ~g~l~v~gg~~~~v~~yd~~~~~W 310 (390)
+++||+.....+.|.++|+.+.+-
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeE
Confidence 356888876778899999876543
No 248
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=22.03 E-value=7.1e+02 Score=23.91 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=61.8
Q ss_pred CCEEEEEcccccCCeEEEEECCCCcEeecCCCCCCCcceeeeee-CCEEEEEeccCCCCCccceEEEEECCCCcEEEcCC
Q 016421 142 GSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSL-GSIAIIAGGSDKNGHVLKSAELYDSTTGRWEMLPS 220 (390)
Q Consensus 142 ~~~iy~~Gg~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 220 (390)
++.||..| ..+..+-+||..+.. .+..+|..-.......+ .|--|++-+.+. .+|.++|+.... ....
T Consensus 358 DgLifgtg--t~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-----~~V~lwDLRKl~--n~kt 426 (506)
T KOG0289|consen 358 DGLIFGTG--TPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-----GSVKLWDLRKLK--NFKT 426 (506)
T ss_pred CceEEecc--CCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-----CeEEEEEehhhc--ccce
Confidence 55555544 345678889987765 44555543333333344 333344444332 238889987554 2222
Q ss_pred CCCCC-cCceEEEE--CCEEEEEecccCCCccCceEEEEeCCCCceEEccCCCC
Q 016421 221 MHSPR-RLCSGFFM--DGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYP 271 (390)
Q Consensus 221 ~~~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 271 (390)
.+.+- .......+ -|...+++|. .-.|+.|+-++..|+++..++.
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~------~l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGS------DLQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecc------eeEEEEEecccccceeeehhhh
Confidence 22221 12222333 3455555543 2357888999999999877665
No 249
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=22.02 E-value=7.2e+02 Score=23.95 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=32.7
Q ss_pred cCCeEEEEECCCCcEeecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECC
Q 016421 153 FDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDST 211 (390)
Q Consensus 153 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~ 211 (390)
..++++++|-..+---.+.-+-..-...++-..++.+|++-=.. ..-+++.|+.
T Consensus 404 ~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrq-----tDPlfviDls 457 (603)
T COG4880 404 PVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQ-----TDPLFVIDLS 457 (603)
T ss_pred ccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEec-----cCceEEEEcC
Confidence 34788899887766555554433333456666788888874332 2336666664
No 250
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.77 E-value=9.6e+02 Score=24.95 Aligned_cols=181 Identities=16% Similarity=0.080 Sum_probs=80.7
Q ss_pred EeCCEEEEEcccccCCeEEEEECCCCcE-eecCCCCCCCcceeeeeeCCEEEEEeccCCCCCccceEEEEECCCCcEEEc
Q 016421 140 AVGSELLVFGRELFDFAIWKYSLVFRSW-MKCEGMNHPRCLFGSGSLGSIAIIAGGSDKNGHVLKSAELYDSTTGRWEML 218 (390)
Q Consensus 140 ~~~~~iy~~Gg~~~~~~~~~yd~~t~~W-~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 218 (390)
...+.+.++.|. ...+-++|..|.+- +.++. . +.+++..+.+.-|++-|... -.+.+||..+..--+.
T Consensus 381 vS~d~~~~~Sga--~~SikiWn~~t~kciRTi~~---~-y~l~~~Fvpgd~~Iv~G~k~-----Gel~vfdlaS~~l~Et 449 (888)
T KOG0306|consen 381 VSSDSILLASGA--GESIKIWNRDTLKCIRTITC---G-YILASKFVPGDRYIVLGTKN-----GELQVFDLASASLVET 449 (888)
T ss_pred eecCceeeeecC--CCcEEEEEccCcceeEEecc---c-cEEEEEecCCCceEEEeccC-----CceEEEEeehhhhhhh
Confidence 345555555442 24677778776543 33322 2 44555556554444444332 2378888876553322
Q ss_pred CCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEe-CCCC-ceEEc-----cCCCCCCCCcCCCCCEEEEECCEEE
Q 016421 219 PSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFD-LETR-KWRKI-----EGMYPNVNRAAQAPPLVAVVDNQLY 291 (390)
Q Consensus 219 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd-~~~~-~W~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~ 291 (390)
-+....-...-....+++=++.||.+.....-....+.+ +.+. +--.+ -.++.. --...+.-+|++.
T Consensus 450 i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd------vL~v~~Spdgk~L 523 (888)
T KOG0306|consen 450 IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD------VLCVSVSPDGKLL 523 (888)
T ss_pred hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc------EEEEEEcCCCcEE
Confidence 121122111112233666666666543211000011111 1111 10000 001110 0011233468888
Q ss_pred EEecCCCeEEEEeCCCCceEE-cc--CCCccccCCCcceeEEEEeCCEEEEEcCCCC
Q 016421 292 AVEYLTNMVKKYDKLKNTWDV-LG--RLPVRADLSNGWGLAFKACGNELLVVGGQRG 345 (390)
Q Consensus 292 v~gg~~~~v~~yd~~~~~W~~-v~--~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~ 345 (390)
+++---+.|.+|=.++-+.-. +. .+|.. .-=...+.++.+.|+.+.
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~--------smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL--------SMDISPDSKLIVTGSADK 572 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeeccccccee--------EEeccCCcCeEEeccCCC
Confidence 888767778888666654332 21 22221 001134778888887663
No 251
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=20.49 E-value=8.5e+02 Score=24.24 Aligned_cols=109 Identities=12% Similarity=0.055 Sum_probs=56.7
Q ss_pred CCEEEEEeccC-CCCCccceEEEEECCCCcEEEcC--CCCCCCcCceEE-EECCEEEEEecccCCCccCceEEEEeCCCC
Q 016421 186 GSIAIIAGGSD-KNGHVLKSAELYDSTTGRWEMLP--SMHSPRRLCSGF-FMDGKFYVIGGMSSPTVSLTCGEEFDLETR 261 (390)
Q Consensus 186 ~~~lyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~ 261 (390)
++.++.+.-.- ..+...-+.-+|+...++-+.+. ..|.+-.-.+++ ..+..-.++|-.+ .++..||..++
T Consensus 218 ~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~D------gSiiLyD~~~~ 291 (545)
T PF11768_consen 218 PYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCED------GSIILYDTTRG 291 (545)
T ss_pred CcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecC------CeEEEEEcCCC
Confidence 34566664331 12224455667887777655432 222221111111 1234455555443 24778998776
Q ss_pred c--eEEccCCCCCCCCcCCCCCEEEEECCEEEEEecCCCeEEEEeCCCCc
Q 016421 262 K--WRKIEGMYPNVNRAAQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNT 309 (390)
Q Consensus 262 ~--W~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~gg~~~~v~~yd~~~~~ 309 (390)
. +.+.+-+|.. .+-.-+|.++++|+..+.+++||..-+.
T Consensus 292 ~t~~~ka~~~P~~---------iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 292 VTLLAKAEFIPTL---------IAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred eeeeeeecccceE---------EEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 4 3333322221 1223467888888888888888876653
No 252
>PRK02888 nitrous-oxide reductase; Validated
Probab=20.39 E-value=9.2e+02 Score=24.59 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=33.1
Q ss_pred CeEEEEeCCC---CceEEccCCCccccCCCcceeEEEEeCCEEEEEcCCCCCCCCeEEEeeecCCC
Q 016421 298 NMVKKYDKLK---NTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKS 360 (390)
Q Consensus 298 ~~v~~yd~~~---~~W~~v~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~i~~y~~~~ 360 (390)
+.|-+.|..+ ..+..+..+|.+... +|..+.--+.++|+-|+.+. ++-++|.++
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsP---HGV~vSPDGkylyVanklS~------tVSVIDv~k 352 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNP---HGVNTSPDGKYFIANGKLSP------TVTVIDVRK 352 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCc---cceEECCCCCEEEEeCCCCC------cEEEEEChh
Confidence 5677888776 135566666666554 34554445566777777542 466777765
No 253
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=20.29 E-value=6e+02 Score=22.36 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=86.6
Q ss_pred EEEEECCCCcEEEcCCCCCCCcCceEEEECCEEEEEecccCCCccCceEEEEeC----CCCceEEccCCCCCCCCcCCCC
Q 016421 205 AELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDL----ETRKWRKIEGMYPNVNRAAQAP 280 (390)
Q Consensus 205 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~----~~~~W~~~~~~~~~~~~~~~~~ 280 (390)
+.......+.|..= ++|. ++++|+..+.. ...+..|.. ..+.|...-.+|... .+
T Consensus 12 ~~~~~~~~GsWmrD-pl~~----------~~r~~~~~~~~-----~~~l~E~~~~~~~~~~~~~~~~~lp~~~-----~g 70 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRD-PLPA----------DDRIYVMNYFD-----GLMLTEYTNLEDFKRGRKAEKYRLPYSW-----DG 70 (249)
T ss_pred EEeeccccceeecC-CCcc----------cCceEEecccc-----CceEEEeccHHHhhccCcceEEeCCCCc-----cc
Confidence 44556666888542 1221 67888884432 233444543 334565555555532 23
Q ss_pred CEEEEECCEEEEEecCCCeEEEEeCCCC---ceEEccCCCccccCCCcce----eEEEEeCCEEEEEcCCCCCCCCeEEE
Q 016421 281 PLVAVVDNQLYAVEYLTNMVKKYDKLKN---TWDVLGRLPVRADLSNGWG----LAFKACGNELLVVGGQRGPEGENVVL 353 (390)
Q Consensus 281 ~~~~~~~g~l~v~gg~~~~v~~yd~~~~---~W~~v~~~~~~~~~~~~~~----~~~~~~~~~lyv~GG~~~~~~~~~~i 353 (390)
..-++.+|.+|.-...+..+.+||..+. .|..++.+.........++ .-+++..+-|+++=-..++.+.. .+
T Consensus 71 Tg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~i-v~ 149 (249)
T KOG3545|consen 71 TGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTI-VL 149 (249)
T ss_pred cceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcE-Ee
Confidence 3578899999998888888999999884 4777665433322111221 23344555666666544444332 24
Q ss_pred eeecCCCCCCCCCCceEEecccC-ccCeEEeeee
Q 016421 354 NSWCPKSGVNNGTLDWKVLAEKQ-HVGVFVYNCA 386 (390)
Q Consensus 354 ~~y~~~~~~~~~~~~W~~~~~~p-~~~~~~~~~~ 386 (390)
-..||++ -.-..+|.+-=+++ ....|.-|..
T Consensus 150 skLdp~t--l~~e~tW~T~~~k~~~~~aF~iCGv 181 (249)
T KOG3545|consen 150 SKLDPET--LEVERTWNTTLPKRSAGNAFMICGV 181 (249)
T ss_pred eccCHHH--hheeeeeccccCCCCcCceEEEeee
Confidence 4677743 12335795544443 3445555544
Done!