BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016422
(390 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=1
SV=1
Length = 374
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 41 ADTELESFQKRV---TDRFLDLSSSSDELLTLSW--VQKLLQSFLISQDEFRQILFRNKS 95
ADTEL+SF + T + ++ E+ LS+ ++++ Q L E +++ K
Sbjct: 32 ADTELQSFDTCLQARTSHVISTLATGVEVRALSFDSLKEVTQCLLEMNQEVVKVILDCKK 91
Query: 96 QLHK-PPMDRLIADYFERSVKALDVCNAIRDGIEQIRQWQKLIEIVLIALDNKKLIGEGH 154
+ K M L+ DYFE S+K LD C A+ G+ + R LI + L +++ L+ G+
Sbjct: 92 DIWKNQEMFELVEDYFENSLKTLDFCAALEKGLRRARDSHLLILVALQQFEDESLVQGGN 151
>sp|Q10QE9|U496A_ORYSJ UPF0496 protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0199100
PE=2 SV=1
Length = 388
Score = 38.9 bits (89), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 41 ADTELESFQ---KRVTDRFLDLSSSSDEL--LTLSWVQKLLQSFL-ISQDEFRQILFRNK 94
+D EL +F +R T R + + E+ L+L ++++ L ++Q+ R IL K
Sbjct: 41 SDPELRTFDTTLQRRTSRAISTLAVGVEVRSLSLESLREVTGCLLDMNQEVVRVILDCKK 100
Query: 95 SQLHKPPMDRLIADYFERSVKALDVCNAIRDGIEQIRQWQKLIEIVLIALDNKK 148
P + L+ DYFE S+ LD C A+ +++ R Q L+ + L D+++
Sbjct: 101 DIWKSPELFDLVEDYFESSLHTLDFCTALDKCLKRARDSQLLLHVALQRFDDEE 154
>sp|A2XDK8|U496A_ORYSI UPF0496 protein 1 OS=Oryza sativa subsp. indica GN=OsI_010151 PE=2
SV=1
Length = 388
Score = 38.9 bits (89), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 41 ADTELESFQ---KRVTDRFLDLSSSSDEL--LTLSWVQKLLQSFL-ISQDEFRQILFRNK 94
+D EL +F +R T R + + E+ L+L ++++ L ++Q+ R IL K
Sbjct: 41 SDPELRTFDTTLQRRTSRAISTLAVGVEVRSLSLESLREVTGCLLDMNQEVVRVILDCKK 100
Query: 95 SQLHKPPMDRLIADYFERSVKALDVCNAIRDGIEQIRQWQKLIEIVLIALDNKK 148
P + L+ DYFE S+ LD C A+ +++ R Q L+ + L D+++
Sbjct: 101 DIWKSPELFDLVEDYFESSLHTLDFCTALDKCLKRARDSQLLLHVALQRFDDEE 154
>sp|Q337C0|U496D_ORYSJ UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300
PE=2 SV=1
Length = 456
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/273 (19%), Positives = 106/273 (38%), Gaps = 45/273 (16%)
Query: 62 SSDELLTLSWVQKLLQSFLISQDEFRQILFRNKSQLHKPPMD---RLIADYFERSVKALD 118
++ ++LTLSW++ + E + + L P D + + Y SVK LD
Sbjct: 54 AASDVLTLSWMRLAVDCL----SELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLD 109
Query: 119 VCNAIRDGIEQIRQWQKLIEIVLIALDNKKLI-GEGHFRRAKKAMVDLAISMLDEKESGS 177
+C A+ + ++ Q Q L++ L L ++ + + +RA+ ++ +E
Sbjct: 110 ICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSL----------REWME 159
Query: 178 ALANRNRSFGRNNVRDNLHKSLGHFRSLSWSVSRSWSAARQLQAIGNNLNAPRSHEIMAT 237
+ R +R S + LQ + NL+ +
Sbjct: 160 LVGVR--------------------------CARLVSCSATLQELAGNLSLMKVKNSAKG 193
Query: 238 NGLANLVFTMSFVLLFVMWALVAAIPCQDRGLQVHFSMSRQFSWAAPMLMLHERIMEESK 297
L ++ + V +FV VA + + L V + +F W+ LH + EE
Sbjct: 194 KVLMRALYGIESVTVFVCSIFVAVLSGSPKPL-VELHVPEKFGWSQAFNDLHTAVSEELT 252
Query: 298 RRDRRNASGLLREIYQIEKSTRLMNELLDSAQF 330
R+ + ++E+ ++E R ++ L ++Q
Sbjct: 253 RQLSGGSVAAVKELEEVEACARRLHVLASTSQL 285
>sp|A2Z9A6|U496D_ORYSI UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3
SV=2
Length = 456
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 51/273 (18%), Positives = 106/273 (38%), Gaps = 45/273 (16%)
Query: 62 SSDELLTLSWVQKLLQSFLISQDEFRQILFRNKSQLHKPPMD---RLIADYFERSVKALD 118
++ ++LTLSW++ + E + + L P D + + Y SVK LD
Sbjct: 54 AASDVLTLSWMRLAVDCL----SELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLD 109
Query: 119 VCNAIRDGIEQIRQWQKLIEIVLIALDNKKLI-GEGHFRRAKKAMVDLAISMLDEKESGS 177
+C A+ + ++ Q Q L++ L L ++ + + +RA+ ++ +E
Sbjct: 110 ICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSL----------REWME 159
Query: 178 ALANRNRSFGRNNVRDNLHKSLGHFRSLSWSVSRSWSAARQLQAIGNNLNAPRSHEIMAT 237
+ R R S + LQ + NL+ + +
Sbjct: 160 LVGVR--------------------------CPRLVSCSATLQELAGNLSLMKVKNSVKG 193
Query: 238 NGLANLVFTMSFVLLFVMWALVAAIPCQDRGLQVHFSMSRQFSWAAPMLMLHERIMEESK 297
L ++ + V +FV VA + + L V + +F W+ LH + EE
Sbjct: 194 KVLMRALYGIESVTVFVCSIFVAVLSGSPKPL-VELHVPEKFGWSQAFNDLHTAVSEELT 252
Query: 298 RRDRRNASGLLREIYQIEKSTRLMNELLDSAQF 330
R+ + ++E+ ++E + ++ L ++Q
Sbjct: 253 RQLAGGSVAAVKELEEVEACAKRLHVLASTSQL 285
>sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2
SV=1
Length = 349
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 65 ELLTLSWVQKLLQSFLISQDEFRQILFRNKSQLHKPPMD---RLIADYFERSVKALDVCN 121
++LT+SW+++ ++S + + + ++ + L P D + + Y + SVK LD+CN
Sbjct: 57 DILTVSWMKQAMESLCETHNGIKTLI----TDLELPVSDWEDKWVDVYLDISVKLLDLCN 112
Query: 122 AIRDGIEQIRQWQKLIEIVL 141
A + ++ Q L++ L
Sbjct: 113 AFSSELTRLNQGHLLLQFAL 132
>sp|A3CLD3|SECA1_STRSV Protein translocase subunit SecA 1 OS=Streptococcus sanguinis
(strain SK36) GN=secA1 PE=3 SV=1
Length = 839
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 40 DADTELESFQKRVTDRFLDLSSSSDELLTLSWVQKLLQSFLISQDEFRQILFRNKSQLHK 99
D E+ + KR +R +D SS SD+ + + + L+S+D KS
Sbjct: 625 DLSPEIHAMIKRTINRIVDGSSHSDQDDKIEAILNFAKYNLVSEDSISDSDLEGKS---- 680
Query: 100 PPMDRLIADY-FERSVKALDVCNA-IRDGIEQIRQWQKLIEIVLIALDNK 147
D+ I DY FER+++ D A +RD E +R++QK+ ++L +D+K
Sbjct: 681 ---DQEIKDYLFERALEVYDSQIAKLRDE-EAVREFQKV--LILRVVDSK 724
>sp|Q8GW16|U496H_ARATH UPF0496 protein At5g66675 OS=Arabidopsis thaliana GN=At5g66675 PE=2
SV=1
Length = 412
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 105 LIADYFERSVKALDVCNAIRDGIEQIRQWQKLIEIVL 141
L+ YF+ S+K LD CNA+ + +++ R Q L++ L
Sbjct: 121 LVNAYFDSSIKTLDFCNAVDNCVKRARIGQMLLQFAL 157
>sp|Q9SYZ8|U496B_ARATH UPF0496 protein At4g34330 OS=Arabidopsis thaliana GN=At4g34330 PE=3
SV=1
Length = 354
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 42 DTELESFQKRV---TDRFLDLSSSSDELLTLSW--VQKLLQSFLISQDEFRQILFRNKSQ 96
D E++SF R+ T + ++ E+ +LS+ ++ ++ S L E +++ K
Sbjct: 31 DMEIQSFDTRMQARTSHVISTLATGVEVRSLSFDSLKAVIGSLLDMNQEVAKVILDCKKD 90
Query: 97 LHK-PPMDRLIADYFERSVKALDVCNAIRDGIEQIR 131
+ K M + YFE S+K LD NA++ G++ ++
Sbjct: 91 IWKNQEMFEFVEAYFETSLKTLDFFNALKRGLQGVQ 126
>sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630 OS=Arabidopsis thaliana GN=At2g18630 PE=2
SV=3
Length = 393
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 42 DTELESFQKRV---TDRFLDLSSSSDELLTLSW--VQKLLQSFL-ISQDEFRQILFRNKS 95
D +LESF + T+R ++ +S E+ +LS+ ++++ Q L ++QD + IL +
Sbjct: 44 DPKLESFDSALHERTNRVINKLASGVEIKSLSFDSLREVTQCLLDMNQDVVKVILQDKED 103
Query: 96 QLHKPPMDRLIADYFERSVKALDVCNAIRDGIEQIRQWQKLIEIVL 141
+ + L+ YFE + K +D C+ + + + + R+ Q +I+ +
Sbjct: 104 IWNNQDLFSLVNLYFESTAKTMDFCSELENCLNRARRSQVIIQFAV 149
>sp|P47539|FTSY_MYCGE Signal recognition particle receptor FtsY OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=ftsY PE=3
SV=1
Length = 346
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 51 RVTDRFLDLSSSSDELLTLSWVQKLLQSFLISQDEFRQI-LFRNKSQLHKPPMDRLIADY 109
R+TD L D+++ KL + LI + F + LF + + K IAD+
Sbjct: 100 RITDFQLIKELIIDQIIVYYIQDKLFDTDLIVKPNFTNVYLFVGVNGVGKTTTLAKIADF 159
Query: 110 FERSVK--ALDVCNAIRDG-IEQIRQWQKLIEIVLIALDNKKLIGEGHFRRAKKAMVD 164
F + K L + R G IEQ+ QW KL+ ++ + K+ FR KK + D
Sbjct: 160 FIKQNKRVLLVAGDTFRAGAIEQLNQWAKLLNCDIVLPNPKEQTPAVIFRGVKKGIDD 217
>sp|Q10321|SHG1_SCHPO Set1 complex component shg1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=shg1 PE=3 SV=3
Length = 132
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 148 KLIGEGHFRRAKKAMVDLAISMLDEKESGSALANRNRSFGRNNVRDNLHKSLGHFRS--- 204
K EGHF R +K + + ++EKESG L + V+D KS FR+
Sbjct: 15 KFKKEGHFDRLRKQI----LETVNEKESGPLLDRLKKIIDEEMVKDRTLKSKDQFRAAPL 70
Query: 205 LSWSVSRSWSAARQLQAIGNNL 226
++ +V RS ++ I +N+
Sbjct: 71 IAGAVDRSSLYEDSMEHIRSNV 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,374,623
Number of Sequences: 539616
Number of extensions: 5173011
Number of successful extensions: 16029
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 16007
Number of HSP's gapped (non-prelim): 46
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)