Query 016422
Match_columns 390
No_of_seqs 161 out of 271
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:19:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljm_A Coil Ser L9C; de novo d 50.4 15 0.00051 22.3 2.9 15 349-363 8-22 (31)
2 2akf_A Coronin-1A; coiled coil 45.0 25 0.00085 21.7 3.3 16 341-356 12-27 (32)
3 1ud0_A HSC70, 70 kDa heat-shoc 43.7 1.1E+02 0.0038 23.9 8.3 14 338-351 35-48 (113)
4 2yy0_A C-MYC-binding protein; 42.6 30 0.001 24.3 4.0 33 334-366 18-50 (53)
5 2p32_A Heat shock 70 kDa prote 38.0 1.1E+02 0.0039 24.3 7.6 19 334-352 45-63 (120)
6 4dnd_A Syntaxin-10, SYN10; str 36.7 90 0.0031 25.8 6.8 29 339-367 64-92 (130)
7 3lof_A Heat shock 70 kDa prote 36.2 1.5E+02 0.0052 23.2 8.0 17 335-351 37-53 (113)
8 3na7_A HP0958; flagellar bioge 32.5 1.6E+02 0.0056 26.7 8.6 40 340-379 44-83 (256)
9 1kd8_B GABH BLL, GCN4 acid bas 31.5 77 0.0026 20.4 4.1 24 338-361 4-27 (36)
10 4i0x_A ESAT-6-like protein MAB 29.2 1.7E+02 0.0058 22.1 6.9 33 335-367 40-72 (94)
11 1pzq_A Erythronolide synthase; 27.8 88 0.003 21.6 4.3 38 340-377 10-49 (60)
12 2pnv_A Small conductance calci 27.6 84 0.0029 21.1 4.1 25 340-364 14-38 (43)
13 4ioe_A Secreted protein ESXB; 27.5 1.8E+02 0.0063 21.3 8.7 54 318-371 32-85 (93)
14 1m1j_B Fibrinogen beta chain; 27.3 4.4E+02 0.015 26.4 11.2 23 276-298 82-104 (464)
15 2pnv_A Small conductance calci 26.2 88 0.003 21.0 4.0 21 339-359 20-40 (43)
16 1t2k_D Cyclic-AMP-dependent tr 25.6 1.4E+02 0.0047 21.1 5.3 28 341-368 28-55 (61)
17 3zbh_A ESXA; unknown function, 25.2 2.1E+02 0.0071 21.1 7.4 40 336-375 50-89 (99)
18 3q5w_A Protein CUT8; proteasom 24.8 23 0.00079 32.8 1.2 15 151-165 221-235 (245)
19 3nmd_A CGMP dependent protein 24.5 1.3E+02 0.0046 22.4 5.1 18 344-361 42-59 (72)
20 3mq9_A Bone marrow stromal ant 24.1 2.3E+02 0.008 27.7 8.6 40 339-378 394-433 (471)
21 3fav_B ESAT-6, 6 kDa early sec 23.4 1.8E+02 0.0062 21.5 6.1 33 337-369 47-79 (94)
22 3mq7_A Bone marrow stromal ant 22.7 2.1E+02 0.0073 23.3 6.4 33 341-373 70-102 (121)
23 3gwk_C SAG1039, putative uncha 22.1 2.5E+02 0.0084 20.9 7.2 41 337-377 50-90 (98)
24 2xz3_A Maltose ABC transporter 21.7 1.6E+02 0.0055 28.8 6.9 40 340-379 377-416 (463)
25 1lq7_A Alpha3W; three helix bu 21.6 2.1E+02 0.0073 20.0 8.2 36 336-371 26-63 (67)
26 1hjb_A Ccaat/enhancer binding 20.9 1.4E+02 0.0048 23.0 4.8 43 338-380 39-81 (87)
27 1jnm_A Proto-oncogene C-JUN; B 20.6 1.1E+02 0.0038 21.7 4.0 34 343-376 23-56 (62)
28 1kd8_A GABH AIV, GCN4 acid bas 20.5 1.3E+02 0.0046 19.3 3.7 24 339-362 5-28 (36)
29 1mof_A Moloney murine leukemia 20.1 1.1E+02 0.0037 21.7 3.6 28 352-379 5-32 (55)
30 3fav_A ESAT-6-like protein ESX 20.0 2.8E+02 0.0097 20.8 7.3 38 334-371 46-83 (101)
No 1
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=50.42 E-value=15 Score=22.28 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=5.7
Q ss_pred HHHHHHhcchhhhhh
Q 016422 349 MVFESIKRGLNPLEG 363 (390)
Q Consensus 349 ~~~e~Le~GLe~Le~ 363 (390)
+.|..|+..|..|++
T Consensus 8 kkcaalesklqalek 22 (31)
T 3ljm_A 8 KKCAALESKLQALEK 22 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 2
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=44.98 E-value=25 Score=21.71 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 016422 341 RQRVQELSMVFESIKR 356 (390)
Q Consensus 341 ~~~veeL~~~~e~Le~ 356 (390)
+..|++|++.++.|++
T Consensus 12 ~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 12 NAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 3
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=43.73 E-value=1.1e+02 Score=23.91 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 016422 338 GEVRQRVQELSMVF 351 (390)
Q Consensus 338 ~~v~~~veeL~~~~ 351 (390)
..+...+++++.++
T Consensus 35 ~~i~~~i~~l~~~L 48 (113)
T 1ud0_A 35 QKILDKCNEIISWL 48 (113)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 4
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.59 E-value=30 Score=24.32 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcchhhhhhHHh
Q 016422 334 EEKEGEVRQRVQELSMVFESIKRGLNPLEGQVR 366 (390)
Q Consensus 334 ~e~~~~v~~~veeL~~~~e~Le~GLe~Le~qVd 366 (390)
..+.+.++...++|+..++.|.+.++.+..++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888888888887766554
No 5
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=38.01 E-value=1.1e+02 Score=24.31 Aligned_cols=19 Identities=11% Similarity=0.316 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 016422 334 EEKEGEVRQRVQELSMVFE 352 (390)
Q Consensus 334 ~e~~~~v~~~veeL~~~~e 352 (390)
.++.+.+...+++|+.+++
T Consensus 45 ~eek~~I~~~i~el~~~L~ 63 (120)
T 2p32_A 45 PEDKKKIEDKCDEILKWLD 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444555555554443
No 6
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=36.66 E-value=90 Score=25.85 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhhHHhH
Q 016422 339 EVRQRVQELSMVFESIKRGLNPLEGQVRE 367 (390)
Q Consensus 339 ~v~~~veeL~~~~e~Le~GLe~Le~qVd~ 367 (390)
++...-.||+..|+.++.-|++|++-|.=
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666653
No 7
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=36.15 E-value=1.5e+02 Score=23.19 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 016422 335 EKEGEVRQRVQELSMVF 351 (390)
Q Consensus 335 e~~~~v~~~veeL~~~~ 351 (390)
++...+...+++++.++
T Consensus 37 eek~~i~~~i~e~~~wL 53 (113)
T 3lof_A 37 ADKKKVLDKCQEVISWL 53 (113)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444455554444
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.51 E-value=1.6e+02 Score=26.70 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhHHhHHHHHHHHhHHHH
Q 016422 340 VRQRVQELSMVFESIKRGLNPLEGQVREVFHKIVRSRTEG 379 (390)
Q Consensus 340 v~~~veeL~~~~e~Le~GLe~Le~qVd~lFr~Iv~~R~~L 379 (390)
++..+..++..++.++.-+..++..++++-.+|-+.+.-+
T Consensus 44 l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 44 KNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444555554444433
No 9
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.54 E-value=77 Score=20.43 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhh
Q 016422 338 GEVRQRVQELSMVFESIKRGLNPL 361 (390)
Q Consensus 338 ~~v~~~veeL~~~~e~Le~GLe~L 361 (390)
.++...|+||...-..|+.-+..|
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555555555555555444444
No 10
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=29.20 E-value=1.7e+02 Score=22.06 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhhhhHHhH
Q 016422 335 EKEGEVRQRVQELSMVFESIKRGLNPLEGQVRE 367 (390)
Q Consensus 335 e~~~~v~~~veeL~~~~e~Le~GLe~Le~qVd~ 367 (390)
+-........++.......|.+.|+.+...|+.
T Consensus 40 ~Aa~af~~~~~~w~~~a~~l~~~L~~i~~~l~~ 72 (94)
T 4i0x_A 40 SAADAYRSGWDEMQDGATKVWNALTDIASTLGS 72 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888888888888888777664
No 11
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=27.77 E-value=88 Score=21.56 Aligned_cols=38 Identities=16% Similarity=0.399 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHH--hcchhhhhhHHhHHHHHHHHhHH
Q 016422 340 VRQRVQELSMVFESI--KRGLNPLEGQVREVFHKIVRSRT 377 (390)
Q Consensus 340 v~~~veeL~~~~e~L--e~GLe~Le~qVd~lFr~Iv~~R~ 377 (390)
+..+++||++.++.| +.|-|++...++.+.|+--.-|.
T Consensus 10 igdrldelekalealsaedghddvgqrlesllrrwnsrra 49 (60)
T 1pzq_A 10 IGDRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRA 49 (60)
T ss_dssp THHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccc
Confidence 456788888888887 46888888888888877655553
No 12
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.61 E-value=84 Score=21.12 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhH
Q 016422 340 VRQRVQELSMVFESIKRGLNPLEGQ 364 (390)
Q Consensus 340 v~~~veeL~~~~e~Le~GLe~Le~q 364 (390)
+..+=++|++++..|+..||.|.++
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 13
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=27.54 E-value=1.8e+02 Score=21.30 Aligned_cols=54 Identities=7% Similarity=0.077 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHhcchhhhhhHHhHHHHH
Q 016422 318 TRLMNELLDSAQFPITEEKEGEVRQRVQELSMVFESIKRGLNPLEGQVREVFHK 371 (390)
Q Consensus 318 v~~L~~~i~~~~~~~~~e~~~~v~~~veeL~~~~e~Le~GLe~Le~qVd~lFr~ 371 (390)
+..|...++.....=.....+.+....+++...+..+.+.|+.+...++..=..
T Consensus 32 l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~ 85 (93)
T 4ioe_A 32 INRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIADK 85 (93)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555554433332334455788888888888888888888888877765443
No 14
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.26 E-value=4.4e+02 Score=26.44 Aligned_cols=23 Identities=4% Similarity=0.049 Sum_probs=16.0
Q ss_pred ccCCcchHHHHHHHHHHHHHHhh
Q 016422 276 SRQFSWAAPMLMLHERIMEESKR 298 (390)
Q Consensus 276 p~~~~Ws~s~~~Lq~rv~eE~~~ 298 (390)
|.++.|..-|.+-|+.|...+..
T Consensus 82 PTtC~l~D~L~k~q~~V~~~Lqe 104 (464)
T 1m1j_B 82 PTGCELQTTLLKQEKTVKPVLRD 104 (464)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHhhhhhHhHHHH
Confidence 67788888777767767654443
No 15
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.17 E-value=88 Score=21.03 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhcchh
Q 016422 339 EVRQRVQELSMVFESIKRGLN 359 (390)
Q Consensus 339 ~v~~~veeL~~~~e~Le~GLe 359 (390)
++.+++..|+.+++.|.+++.
T Consensus 20 ~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554443
No 16
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.60 E-value=1.4e+02 Score=21.05 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhHHhHH
Q 016422 341 RQRVQELSMVFESIKRGLNPLEGQVREV 368 (390)
Q Consensus 341 ~~~veeL~~~~e~Le~GLe~Le~qVd~l 368 (390)
...++.|...-..|..-+..|..++..+
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 17
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=25.24 E-value=2.1e+02 Score=21.12 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhhhhHHhHHHHHHHHh
Q 016422 336 KEGEVRQRVQELSMVFESIKRGLNPLEGQVREVFHKIVRS 375 (390)
Q Consensus 336 ~~~~v~~~veeL~~~~e~Le~GLe~Le~qVd~lFr~Iv~~ 375 (390)
..+.+....+++...+..+.+.|+.+...++..-...-.+
T Consensus 50 a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~ 89 (99)
T 3zbh_A 50 SSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDT 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888887766554443
No 18
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=24.75 E-value=23 Score=32.78 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=9.3
Q ss_pred CchHHHHHHHHHHHH
Q 016422 151 GEGHFRRAKKAMVDL 165 (390)
Q Consensus 151 ~~~~~~RA~~aL~~~ 165 (390)
+.+.+.+|.+.+..+
T Consensus 221 S~gkl~~al~~~k~l 235 (245)
T 3q5w_A 221 SQNRMEEALNYLKQL 235 (245)
T ss_dssp TTTTTHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHh
Confidence 445566777666665
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.47 E-value=1.3e+02 Score=22.39 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhcchhhh
Q 016422 344 VQELSMVFESIKRGLNPL 361 (390)
Q Consensus 344 veeL~~~~e~Le~GLe~L 361 (390)
++++++.++..++-+..|
T Consensus 42 I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 42 IDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 20
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.11 E-value=2.3e+02 Score=27.66 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhhHHhHHHHHHHHhHHH
Q 016422 339 EVRQRVQELSMVFESIKRGLNPLEGQVREVFHKIVRSRTE 378 (390)
Q Consensus 339 ~v~~~veeL~~~~e~Le~GLe~Le~qVd~lFr~Iv~~R~~ 378 (390)
+.++....|++.+...++++-.++.|..-|-|.++.--.+
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS 433 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH
Confidence 5667777888888888888888888888888877765443
No 21
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=23.38 E-value=1.8e+02 Score=21.47 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhHHhHHH
Q 016422 337 EGEVRQRVQELSMVFESIKRGLNPLEGQVREVF 369 (390)
Q Consensus 337 ~~~v~~~veeL~~~~e~Le~GLe~Le~qVd~lF 369 (390)
.+.......+.......|.+.|+.+...|+.--
T Consensus 47 ~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~ 79 (94)
T 3fav_B 47 SEAYQGVQQKWDATATELNNALQNLARTISEAG 79 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888888877776643
No 22
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.67 E-value=2.1e+02 Score=23.29 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhHHhHHHHHHH
Q 016422 341 RQRVQELSMVFESIKRGLNPLEGQVREVFHKIV 373 (390)
Q Consensus 341 ~~~veeL~~~~e~Le~GLe~Le~qVd~lFr~Iv 373 (390)
+..++||+..+..|.+-|...+.+|..+.+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 667999999999999999999999888887764
No 23
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=22.06 E-value=2.5e+02 Score=20.87 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhHHhHHHHHHHHhHH
Q 016422 337 EGEVRQRVQELSMVFESIKRGLNPLEGQVREVFHKIVRSRT 377 (390)
Q Consensus 337 ~~~v~~~veeL~~~~e~Le~GLe~Le~qVd~lFr~Iv~~R~ 377 (390)
.+.+....+++...+..+.+.|+.+...++..-...-.+=.
T Consensus 50 ~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~ 90 (98)
T 3gwk_C 50 FDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDA 90 (98)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888889888999999999888888877665544433
No 24
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=21.74 E-value=1.6e+02 Score=28.76 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhhHHhHHHHHHHHhHHHH
Q 016422 340 VRQRVQELSMVFESIKRGLNPLEGQVREVFHKIVRSRTEG 379 (390)
Q Consensus 340 v~~~veeL~~~~e~Le~GLe~Le~qVd~lFr~Iv~~R~~L 379 (390)
.+.-+++++..++.+++.|+.|+++++.+-..++..|-.|
T Consensus 377 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 416 (463)
T 2xz3_A 377 LTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGL 416 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 4456788888888899999999999999999999988764
No 25
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.62 E-value=2.1e+02 Score=20.02 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcch--hhhhhHHhHHHHH
Q 016422 336 KEGEVRQRVQELSMVFESIKRGL--NPLEGQVREVFHK 371 (390)
Q Consensus 336 ~~~~v~~~veeL~~~~e~Le~GL--e~Le~qVd~lFr~ 371 (390)
++++++..-++|++.++.|..|= ..++++|..+-..
T Consensus 26 rieelkkkweelkkkieelggggevkkveeevkkleee 63 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEE 63 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35566677777777777766553 2344444444333
No 26
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.90 E-value=1.4e+02 Score=23.04 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHhHHHHHHHHhHHHHh
Q 016422 338 GEVRQRVQELSMVFESIKRGLNPLEGQVREVFHKIVRSRTEGL 380 (390)
Q Consensus 338 ~~v~~~veeL~~~~e~Le~GLe~Le~qVd~lFr~Iv~~R~~LL 380 (390)
.++...+++|+..-..|+.-++.|..++..+-..++..+..++
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 3555667777777777777777777776666655555554443
No 27
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.64 E-value=1.1e+02 Score=21.68 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhcchhhhhhHHhHHHHHHHHhH
Q 016422 343 RVQELSMVFESIKRGLNPLEGQVREVFHKIVRSR 376 (390)
Q Consensus 343 ~veeL~~~~e~Le~GLe~Le~qVd~lFr~Iv~~R 376 (390)
.+++|+..++.|+..-+.|..+|..+-..+..-+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443333
No 28
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.46 E-value=1.3e+02 Score=19.29 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhh
Q 016422 339 EVRQRVQELSMVFESIKRGLNPLE 362 (390)
Q Consensus 339 ~v~~~veeL~~~~e~Le~GLe~Le 362 (390)
++...|++|-..-..|+.-+..|.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455555444444444444443
No 29
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=20.06 E-value=1.1e+02 Score=21.72 Aligned_cols=28 Identities=11% Similarity=0.283 Sum_probs=19.0
Q ss_pred HHHhcchhhhhhHHhHHHHHHHHhHHHH
Q 016422 352 ESIKRGLNPLEGQVREVFHKIVRSRTEG 379 (390)
Q Consensus 352 e~Le~GLe~Le~qVd~lFr~Iv~~R~~L 379 (390)
+.+++.|..|.++++.+...+...|..|
T Consensus 5 ~~~~~si~~l~~ql~sla~vvlQNRraL 32 (55)
T 1mof_A 5 REVEKSISNLEKSLTSLSEVVLQNRRGL 32 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777788888888764
No 30
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=20.00 E-value=2.8e+02 Score=20.77 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcchhhhhhHHhHHHHH
Q 016422 334 EEKEGEVRQRVQELSMVFESIKRGLNPLEGQVREVFHK 371 (390)
Q Consensus 334 ~e~~~~v~~~veeL~~~~e~Le~GLe~Le~qVd~lFr~ 371 (390)
.+-.+.......+.......|.+.|+.+...|+.--..
T Consensus 46 G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~ 83 (101)
T 3fav_A 46 GAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQ 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677788888888888888888887777765443
Done!