BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016423
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|B Chain B, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 280
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRN 234
+R +A ++G SQN +Q+QVL LGAL KL++++ + VKAL+ +S L+R
Sbjct: 80 AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 139
Query: 235 NLAG 238
AG
Sbjct: 140 QEAG 143
>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain
pdb|1XQR|B Chain B, Crystal Structure Of The Hspbp1 Core Domain
Length = 296
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRN 234
+R +A ++G SQN +Q+QVL LGAL KL++++ + VKAL+ +S L+R
Sbjct: 96 AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155
Query: 235 NLAG 238
AG
Sbjct: 156 QEAG 159
>pdb|1O9G|A Chain A, Rrna Methyltransferase Avira From Streptomyces
Viridochromogenes At 1.5a
Length = 250
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 91 DPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
DPA L+ A+++ LSP+ L R++E +E E+ PS + Q A
Sbjct: 86 DPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131
>pdb|1O9H|A Chain A, Rrna Methyltransferase Avira From Streptomyces
Viridochromogenes At 2.4a
Length = 250
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 91 DPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
DPA L+ A+++ LSP+ L R++E +E E+ PS + Q A
Sbjct: 86 DPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 301 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 354
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 355 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 302
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 303 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 357
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 401
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 227 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 287 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 340
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 341 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 388
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 229 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 288
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 289 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 343
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 344 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 387
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 301 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 354
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 355 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 302
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 303 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 357
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 401
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 217 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 276
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 277 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 330
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 331 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 378
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 219 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 278
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 279 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 333
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 334 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 377
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 301 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 354
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 355 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 302
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 303 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 357
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 401
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 257 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 310
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 311 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 358
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 199 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 258
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 259 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 260 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 320 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 373
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q+ A AI N T E +V CG+
Sbjct: 374 --VNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 72/164 (43%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 262 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 321
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 322 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 376
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + A + +++ Q ++ V G
Sbjct: 377 GLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG 420
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 225 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 285 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 338
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 339 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 386
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 227 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 286
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 287 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 341
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 342 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 385
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 251 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 304
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 305 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 352
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 193 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 252
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 253 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 307
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 308 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 351
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 251 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 304
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 305 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 352
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 193 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 252
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 253 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 307
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 308 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 351
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 250 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 303
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 346
+ + +V + + AD Q++A AI N T E +V CG+ L L
Sbjct: 304 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 358
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 192 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 251
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 252 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 306
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 307 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 350
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 250 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 303
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 346
+ + +V + + AD Q++A AI N T E +V CG+ L L
Sbjct: 304 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 358
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 192 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 251
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 252 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 306
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 307 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 350
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 246 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 299
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 346
+ + +V + + AD Q++A AI N T E +V CG+ L L
Sbjct: 300 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 354
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 188 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 247
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 248 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 302
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 303 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 346
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 251 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 304
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 305 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 352
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 193 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 252
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 253 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 307
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 308 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 351
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230
L+H D ++ S W + + + V++ G + +L+K++ ++ + AL + +
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 231 LIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289
++ Q ++AG L + +L N I+ ++A + ++ + + + +V
Sbjct: 246 IVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV--- 299
Query: 290 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339
+ + +V + + AD Q++A AI N T E +V CG+
Sbjct: 300 --VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 347
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIKE----LMEKLKTPSDAQLIQIAIDDLNN-S 143
H+DP L ++ + L+ ++ +M +K+ + KL ++ ++ A+ + N
Sbjct: 188 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 247
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q+ + + V P L +P T+I+K + W + + +QV+
Sbjct: 248 TGTDEQTQKVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 302
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A + +++ Q ++ V G
Sbjct: 303 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 346
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 171 LNHPDTDIRKISAWILGK-ASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALY 226
L+ P+ I + + W L AS N +Q V++ GAL L++++ S ++EA+ AL
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQA-VIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 227 TVSSLIRNNLAGQEMF--YVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283
++S G E ++AG L L +L SS ++ ++A+ + ++A E +
Sbjct: 122 NIAS------GGNEQIQAVIDAGALPALVQLL--SSPNEQILQEALWALSNIASGGNEQI 173
Query: 284 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL 343
V D L ++V L +S + + ++AL A+ N+ + +K+ L+ L
Sbjct: 174 QAV-----IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK-L 227
Query: 344 ERLRQQLQEVMLEEDQR 360
E+L+ E + +E Q
Sbjct: 228 EQLQSHENEKIQKEAQE 244
>pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna
Polymerase B1 From The Archaeon Sulfolobus Solfataricus
Length = 847
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 103 QRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI-DDLNNSTLSLEDSQRALQEL---L 158
+R +P +KK E+KELM + +P+D + I+ I D + S L++ L EL +
Sbjct: 685 KRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKGYNLDELAFKV 744
Query: 159 ILVEPID 165
+L +P+D
Sbjct: 745 MLSKPLD 751
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 89 HSDPAKLKETAQDVQRLSPSELKKRQMEIK----ELMEKLKTPSDAQLIQIAIDDLNN-S 143
H DP L +T + L+ ++ M +K + KL S+ ++ A+ + N
Sbjct: 194 HDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIV 253
Query: 144 TLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203
T + E +Q + + V P L +P T+I+K + W + + +QV+
Sbjct: 254 TGTDEQTQVVIDAGALAVFP-----SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 308
Query: 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247
G + L+ ++ + + +A++ V++ Q ++ V G
Sbjct: 309 GLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCG 352
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 224 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283
+ LI G E+ G ++++ + G + KA+ ++ D +L+N+
Sbjct: 311 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNL 370
Query: 284 HKVEPPL--FRDRFFLKSVVDLTASADL 309
HKV P L F DR ++ +A+L
Sbjct: 371 HKVSPSLKGFLDRLLVRDPAQRATAAEL 398
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 182 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---VEEAVKALYTVSS 230
SAW+L + N L + V++ GA+ ++++ S F E+AV AL ++
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG 133
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 182 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---VEEAVKALYTVSS 230
SAW+L + N L + V++ GA+ ++++ S F E+AV AL ++
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG 136
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 226 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285
+ LI G E+ G ++++ + G + KA+ ++ D +L+N+HK
Sbjct: 191 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHK 250
Query: 286 VEPPL--FRDRFFLKSVVDLTASADL 309
V P L F DR ++ +A+L
Sbjct: 251 VSPSLKGFLDRLLVRDPAQRATAAEL 276
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 224 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283
+ LI G E+ G ++++ + G + KA+ ++ D +L+N+
Sbjct: 234 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNL 293
Query: 284 HKVEPPL--FRDRFFLKSVVDLTASADL 309
HKV P L F DR ++ +A+L
Sbjct: 294 HKVSPSLKGFLDRLLVRDPAQRATAAEL 321
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 226 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285
+ LI G E+ G ++++ + G + KA+ ++ D +L+N+HK
Sbjct: 193 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHK 252
Query: 286 VEPPL--FRDRFFLKSVVDLTASADL 309
V P L F DR ++ +A+L
Sbjct: 253 VSPSLKGFLDRLLVRDPAQRATAAEL 278
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 226 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285
+ LI G E+ G ++++ + G + KA+ ++ D +L+N+HK
Sbjct: 182 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHK 241
Query: 286 VEPPL--FRDRFFLKSVVDLTASADL 309
V P L F DR ++ +A+L
Sbjct: 242 VSPSLKGFLDRLLVRDPAQRATAAEL 267
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 226 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285
+ LI G E+ G ++++ + G + KA+ ++ D +L+N+HK
Sbjct: 186 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHK 245
Query: 286 VEPPL--FRDRFFLKSVVDLTASADL 309
V P L F DR ++ +A+L
Sbjct: 246 VSPSLKGFLDRLLVRDPAQRATAAEL 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,851,245
Number of Sequences: 62578
Number of extensions: 369226
Number of successful extensions: 1224
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 109
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)