Query 016423
Match_columns 390
No_of_seqs 252 out of 781
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2160 Armadillo/beta-catenin 100.0 7.5E-44 1.6E-48 348.8 25.3 298 76-383 11-341 (342)
2 PF08609 Fes1: Nucleotide exch 99.8 6.1E-20 1.3E-24 150.4 8.0 87 77-168 3-90 (92)
3 KOG0166 Karyopherin (importin) 99.8 1.5E-17 3.3E-22 171.5 15.8 170 169-346 159-329 (514)
4 COG5064 SRP1 Karyopherin (impo 99.7 4.4E-17 9.5E-22 159.2 9.8 170 169-346 164-335 (526)
5 KOG0166 Karyopherin (importin) 99.6 2.7E-14 5.8E-19 147.6 18.5 153 169-327 286-439 (514)
6 PLN03200 cellulose synthase-in 99.5 1.2E-12 2.7E-17 152.3 21.8 199 147-352 544-750 (2102)
7 PLN03200 cellulose synthase-in 99.4 3.2E-12 7E-17 148.9 20.1 183 136-326 367-561 (2102)
8 COG5064 SRP1 Karyopherin (impo 99.4 4.5E-13 9.8E-18 131.3 9.1 199 128-330 236-449 (526)
9 cd00020 ARM Armadillo/beta-cat 99.3 2.1E-11 4.5E-16 101.0 12.3 118 199-323 2-119 (120)
10 cd00020 ARM Armadillo/beta-cat 99.2 8.7E-11 1.9E-15 97.2 11.8 105 170-276 15-119 (120)
11 PF10508 Proteasom_PSMB: Prote 99.0 2.4E-08 5.2E-13 105.1 20.9 191 146-346 51-252 (503)
12 KOG4224 Armadillo repeat prote 99.0 1.2E-09 2.6E-14 108.3 8.9 170 172-352 136-307 (550)
13 KOG4224 Armadillo repeat prote 99.0 1.6E-08 3.4E-13 100.5 16.3 169 169-347 215-386 (550)
14 KOG2160 Armadillo/beta-catenin 99.0 2.3E-08 5E-13 99.2 17.1 152 173-331 94-247 (342)
15 PF04826 Arm_2: Armadillo-like 98.9 5.4E-08 1.2E-12 93.9 16.6 160 172-344 23-182 (254)
16 KOG1048 Neural adherens juncti 98.8 8.6E-08 1.9E-12 102.7 13.6 190 169-366 240-446 (717)
17 KOG1293 Proteins containing ar 98.5 1.1E-06 2.4E-11 92.8 13.5 151 172-328 387-537 (678)
18 PF03224 V-ATPase_H_N: V-ATPas 98.5 1.6E-06 3.4E-11 85.8 13.6 189 169-372 112-311 (312)
19 PF05804 KAP: Kinesin-associat 98.5 5.9E-06 1.3E-10 89.9 17.2 165 169-346 297-462 (708)
20 KOG4199 Uncharacterized conser 98.4 2.2E-05 4.7E-10 77.9 17.7 174 153-334 268-453 (461)
21 PF10508 Proteasom_PSMB: Prote 98.4 2.4E-05 5.3E-10 82.5 18.8 201 114-325 59-279 (503)
22 PF05804 KAP: Kinesin-associat 98.3 1.8E-05 3.8E-10 86.3 17.0 142 180-334 267-408 (708)
23 KOG4199 Uncharacterized conser 98.3 2.8E-05 6.1E-10 77.1 15.1 170 174-351 254-429 (461)
24 PF08045 CDC14: Cell division 98.2 1.1E-05 2.5E-10 77.7 11.9 102 175-276 104-206 (257)
25 PF00514 Arm: Armadillo/beta-c 98.1 7.5E-06 1.6E-10 56.7 5.6 41 193-233 1-41 (41)
26 cd00256 VATPase_H VATPase_H, r 98.1 0.00062 1.3E-08 70.4 21.3 195 169-377 108-310 (429)
27 PF04826 Arm_2: Armadillo-like 98.1 0.00023 5E-09 68.9 16.8 190 117-325 14-206 (254)
28 PF13513 HEAT_EZ: HEAT-like re 98.1 7.2E-06 1.6E-10 60.1 5.0 55 176-231 1-55 (55)
29 KOG0168 Putative ubiquitin fus 98.0 0.00014 3.1E-09 79.0 16.4 227 127-370 163-409 (1051)
30 PF12348 CLASP_N: CLASP N term 98.0 7E-05 1.5E-09 70.1 12.0 173 141-326 15-208 (228)
31 KOG4500 Rho/Rac GTPase guanine 98.0 4.9E-05 1.1E-09 77.5 11.2 176 170-351 50-237 (604)
32 KOG0946 ER-Golgi vesicle-tethe 97.9 0.00052 1.1E-08 74.3 17.9 190 132-326 62-298 (970)
33 PRK09687 putative lyase; Provi 97.9 0.00041 8.8E-09 68.0 14.8 133 169-323 61-220 (280)
34 PF09759 Atx10homo_assoc: Spin 97.8 9.5E-05 2.1E-09 61.8 7.8 67 178-244 2-70 (102)
35 PRK09687 putative lyase; Provi 97.7 0.00077 1.7E-08 66.0 13.6 91 205-324 160-250 (280)
36 KOG2171 Karyopherin (importin) 97.7 0.0027 5.9E-08 71.2 18.9 172 169-352 355-527 (1075)
37 KOG2759 Vacuolar H+-ATPase V1 97.6 0.00083 1.8E-08 68.4 12.7 168 169-347 121-299 (442)
38 PRK13800 putative oxidoreducta 97.6 0.0028 6E-08 71.5 18.2 162 147-322 666-865 (897)
39 KOG1048 Neural adherens juncti 97.6 0.0008 1.7E-08 72.9 12.7 115 206-325 235-350 (717)
40 PF05536 Neurochondrin: Neuroc 97.4 0.008 1.7E-07 64.3 17.6 184 129-325 3-214 (543)
41 PF03224 V-ATPase_H_N: V-ATPas 97.3 0.0016 3.5E-08 64.4 10.6 158 173-339 68-240 (312)
42 PF01602 Adaptin_N: Adaptin N 97.3 0.0058 1.3E-07 63.8 14.8 138 169-327 86-224 (526)
43 PF13646 HEAT_2: HEAT repeats; 97.2 0.0012 2.6E-08 52.0 7.2 86 206-320 1-88 (88)
44 PF13646 HEAT_2: HEAT repeats; 97.2 0.00066 1.4E-08 53.5 5.2 78 172-272 10-87 (88)
45 KOG2122 Beta-catenin-binding p 97.1 0.0087 1.9E-07 68.7 14.6 180 170-351 402-586 (2195)
46 PF01602 Adaptin_N: Adaptin N 97.1 0.019 4.1E-07 59.9 16.6 131 169-322 49-179 (526)
47 COG5369 Uncharacterized conser 97.1 0.002 4.4E-08 67.4 8.7 151 170-326 396-547 (743)
48 smart00185 ARM Armadillo/beta- 97.1 0.0016 3.4E-08 44.0 5.3 39 194-232 2-40 (41)
49 PF00514 Arm: Armadillo/beta-c 96.9 0.0014 3.1E-08 45.1 4.3 39 236-276 2-40 (41)
50 PRK13800 putative oxidoreducta 96.8 0.0097 2.1E-07 67.2 12.4 155 146-320 697-895 (897)
51 KOG4500 Rho/Rac GTPase guanine 96.8 0.094 2E-06 54.2 17.6 209 153-385 266-483 (604)
52 KOG0168 Putative ubiquitin fus 96.8 0.094 2E-06 57.9 18.5 208 136-352 215-440 (1051)
53 cd00256 VATPase_H VATPase_H, r 96.7 0.067 1.5E-06 55.6 16.3 148 172-326 64-218 (429)
54 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.0049 1.1E-07 53.0 6.6 80 126-235 38-117 (119)
55 KOG1517 Guanine nucleotide bin 96.7 0.017 3.7E-07 64.7 12.0 172 149-326 486-673 (1387)
56 PF09759 Atx10homo_assoc: Spin 96.5 0.0063 1.4E-07 51.0 6.0 57 221-277 3-59 (102)
57 PTZ00429 beta-adaptin; Provisi 96.5 0.051 1.1E-06 60.2 14.5 181 128-325 98-286 (746)
58 KOG2171 Karyopherin (importin) 96.5 0.14 3.1E-06 57.9 17.8 207 115-355 4-216 (1075)
59 PTZ00429 beta-adaptin; Provisi 96.4 0.22 4.7E-06 55.3 18.7 152 112-277 48-208 (746)
60 KOG1991 Nuclear transport rece 96.3 0.58 1.3E-05 52.6 21.2 122 131-255 410-553 (1010)
61 PF05918 API5: Apoptosis inhib 96.3 0.11 2.4E-06 55.6 14.8 156 130-323 2-161 (556)
62 PF05536 Neurochondrin: Neuroc 96.2 0.18 3.8E-06 54.1 16.5 149 169-326 12-170 (543)
63 KOG0946 ER-Golgi vesicle-tethe 96.2 0.08 1.7E-06 58.0 13.6 204 127-339 18-255 (970)
64 KOG4646 Uncharacterized conser 96.2 0.036 7.9E-07 49.0 9.1 118 175-301 30-147 (173)
65 KOG2122 Beta-catenin-binding p 96.2 0.012 2.6E-07 67.7 7.3 137 181-327 460-604 (2195)
66 PF11698 V-ATPase_H_C: V-ATPas 96.1 0.014 3E-07 50.2 6.1 72 204-277 43-115 (119)
67 KOG4413 26S proteasome regulat 96.0 0.18 4E-06 50.6 14.1 168 150-324 63-243 (524)
68 PF13513 HEAT_EZ: HEAT-like re 96.0 0.01 2.2E-07 43.1 4.0 54 219-275 2-55 (55)
69 KOG1293 Proteins containing ar 96.0 0.063 1.4E-06 57.6 11.3 107 169-277 426-533 (678)
70 PF05004 IFRD: Interferon-rela 95.9 0.62 1.3E-05 46.4 17.6 197 169-381 93-305 (309)
71 smart00185 ARM Armadillo/beta- 95.9 0.019 4.2E-07 38.5 4.9 38 237-276 3-40 (41)
72 KOG1241 Karyopherin (importin) 95.9 0.38 8.3E-06 52.7 16.8 195 170-368 372-573 (859)
73 PF11841 DUF3361: Domain of un 95.8 0.14 3E-06 46.3 11.5 125 198-328 5-135 (160)
74 PF14664 RICTOR_N: Rapamycin-i 95.8 0.43 9.3E-06 48.8 16.4 175 143-326 78-271 (371)
75 cd03561 VHS VHS domain family; 95.8 0.23 5E-06 43.1 12.5 108 117-237 5-116 (133)
76 KOG1241 Karyopherin (importin) 95.8 0.4 8.7E-06 52.5 16.5 178 169-354 97-276 (859)
77 KOG0213 Splicing factor 3b, su 95.7 0.043 9.4E-07 59.7 9.0 143 169-324 806-954 (1172)
78 KOG1517 Guanine nucleotide bin 95.7 0.16 3.5E-06 57.2 13.4 101 175-277 570-671 (1387)
79 KOG1222 Kinesin associated pro 95.6 0.87 1.9E-05 47.9 17.3 60 169-229 352-412 (791)
80 smart00288 VHS Domain present 95.4 0.37 8E-06 42.0 12.2 107 116-235 4-113 (133)
81 cd03568 VHS_STAM VHS domain fa 95.4 0.32 7E-06 43.1 11.9 106 118-236 6-113 (144)
82 TIGR02270 conserved hypothetic 95.4 0.13 2.9E-06 53.2 10.9 113 169-322 93-205 (410)
83 COG5181 HSH155 U2 snRNP splice 95.3 0.29 6.2E-06 52.7 13.2 141 169-324 611-759 (975)
84 cd03567 VHS_GGA VHS domain fam 95.3 0.29 6.3E-06 43.2 11.2 107 116-235 5-118 (139)
85 cd03569 VHS_Hrs_Vps27p VHS dom 95.1 0.45 9.8E-06 42.0 12.1 106 118-236 10-117 (142)
86 PF06371 Drf_GBD: Diaphanous G 95.1 0.1 2.2E-06 47.1 8.1 111 206-323 68-186 (187)
87 PF12717 Cnd1: non-SMC mitotic 95.0 0.28 6E-06 44.6 10.8 92 175-277 1-92 (178)
88 PF14664 RICTOR_N: Rapamycin-i 94.8 0.66 1.4E-05 47.4 14.0 154 184-348 5-158 (371)
89 PF06025 DUF913: Domain of Unk 94.8 0.88 1.9E-05 46.7 14.8 83 175-258 122-208 (379)
90 PF13251 DUF4042: Domain of un 94.7 0.3 6.5E-06 45.1 10.1 144 177-326 1-176 (182)
91 PF12348 CLASP_N: CLASP N term 94.7 0.62 1.3E-05 43.3 12.5 141 172-326 17-162 (228)
92 PF02985 HEAT: HEAT repeat; I 94.6 0.058 1.3E-06 34.9 3.8 30 205-234 1-30 (31)
93 PF12460 MMS19_C: RNAPII trans 94.6 1.1 2.5E-05 46.1 15.3 99 176-277 283-394 (415)
94 COG5096 Vesicle coat complex, 94.5 0.71 1.5E-05 51.1 14.1 131 173-325 66-196 (757)
95 PF04078 Rcd1: Cell differenti 94.2 0.9 1.9E-05 44.2 12.6 184 146-334 8-227 (262)
96 PF08045 CDC14: Cell division 94.1 0.64 1.4E-05 45.2 11.3 101 219-325 106-208 (257)
97 KOG3678 SARM protein (with ste 93.9 0.62 1.3E-05 48.8 11.4 156 169-334 187-345 (832)
98 PF10165 Ric8: Guanine nucleot 93.9 0.36 7.8E-06 50.5 10.0 126 194-327 12-171 (446)
99 KOG2023 Nuclear transport rece 93.8 0.54 1.2E-05 51.0 11.0 145 170-326 98-246 (885)
100 PF00790 VHS: VHS domain; Int 93.4 0.77 1.7E-05 40.2 9.8 106 116-234 9-119 (140)
101 PF12031 DUF3518: Domain of un 93.3 0.49 1.1E-05 45.6 8.9 147 66-237 96-248 (257)
102 TIGR02270 conserved hypothetic 93.3 2.8 6E-05 43.5 15.1 89 130-231 116-205 (410)
103 KOG0212 Uncharacterized conser 93.2 5 0.00011 43.1 16.7 101 169-277 343-444 (675)
104 KOG4646 Uncharacterized conser 93.1 0.47 1E-05 42.2 7.7 136 204-353 16-152 (173)
105 PF12717 Cnd1: non-SMC mitotic 93.0 0.93 2E-05 41.2 10.0 91 218-325 2-93 (178)
106 COG5369 Uncharacterized conser 93.0 0.68 1.5E-05 49.2 10.0 154 169-326 438-597 (743)
107 PF05918 API5: Apoptosis inhib 93.0 3.3 7.2E-05 44.5 15.4 137 113-276 21-161 (556)
108 KOG2759 Vacuolar H+-ATPase V1 92.9 1.3 2.9E-05 45.7 11.7 143 176-325 214-439 (442)
109 KOG1824 TATA-binding protein-i 92.9 4.5 9.7E-05 45.8 16.4 216 101-334 20-293 (1233)
110 KOG3678 SARM protein (with ste 92.5 1.8 4E-05 45.4 12.1 144 133-278 182-337 (832)
111 PF12755 Vac14_Fab1_bd: Vacuol 92.3 1.4 3.1E-05 36.4 9.2 93 179-276 3-95 (97)
112 cd03565 VHS_Tom1 VHS domain fa 92.2 3.9 8.5E-05 36.0 12.6 107 117-235 6-117 (141)
113 PF08167 RIX1: rRNA processing 91.9 1.4 3.1E-05 39.7 9.6 114 205-325 26-144 (165)
114 PF11841 DUF3361: Domain of un 91.8 2 4.2E-05 39.0 10.3 105 239-349 4-114 (160)
115 COG1413 FOG: HEAT repeat [Ener 91.6 1.2 2.7E-05 43.9 9.7 86 169-277 50-135 (335)
116 COG5096 Vesicle coat complex, 91.6 4.2 9.1E-05 45.2 14.4 97 169-277 99-195 (757)
117 PF12460 MMS19_C: RNAPII trans 91.4 14 0.00031 38.0 17.7 123 187-326 260-396 (415)
118 KOG1058 Vesicle coat complex C 91.3 3.4 7.3E-05 45.7 13.0 196 116-324 24-272 (948)
119 PF12719 Cnd3: Nuclear condens 91.2 6.3 0.00014 38.7 14.2 101 170-277 35-143 (298)
120 PF14668 RICTOR_V: Rapamycin-i 91.2 0.85 1.8E-05 35.9 6.4 63 179-243 4-67 (73)
121 KOG1062 Vesicle coat complex A 91.1 1.3 2.9E-05 48.9 9.9 137 169-326 114-265 (866)
122 COG1413 FOG: HEAT repeat [Ener 91.0 3.6 7.8E-05 40.5 12.4 52 169-231 81-133 (335)
123 KOG1789 Endocytosis protein RM 91.0 5.8 0.00012 45.6 14.6 167 149-324 1741-1946(2235)
124 KOG1059 Vesicle coat complex A 90.3 2.6 5.6E-05 46.3 11.0 145 119-276 95-247 (877)
125 KOG3036 Protein involved in ce 90.2 19 0.00042 35.1 16.6 152 174-334 90-256 (293)
126 KOG1248 Uncharacterized conser 90.1 43 0.00093 39.0 22.8 163 110-276 587-766 (1176)
127 KOG1222 Kinesin associated pro 90.0 9.6 0.00021 40.5 14.5 163 183-354 485-651 (791)
128 KOG1820 Microtubule-associated 90.0 7.2 0.00016 43.9 14.7 160 147-325 267-444 (815)
129 PF08569 Mo25: Mo25-like; Int 89.9 6.7 0.00015 39.6 13.3 148 174-327 135-286 (335)
130 KOG2259 Uncharacterized conser 89.9 3.8 8.2E-05 44.7 11.8 183 171-389 382-583 (823)
131 KOG1058 Vesicle coat complex C 89.8 4.9 0.00011 44.5 12.7 119 252-384 323-482 (948)
132 KOG2023 Nuclear transport rece 89.8 2.9 6.3E-05 45.6 10.9 156 169-334 135-294 (885)
133 PF11701 UNC45-central: Myosin 89.7 1.2 2.6E-05 39.9 7.0 95 176-273 57-155 (157)
134 KOG2734 Uncharacterized conser 89.5 4.1 8.8E-05 42.6 11.3 128 234-368 113-251 (536)
135 KOG1824 TATA-binding protein-i 89.5 9.5 0.00021 43.3 14.8 95 172-277 942-1036(1233)
136 PF02985 HEAT: HEAT repeat; I 89.3 0.62 1.3E-05 30.0 3.6 29 296-324 1-29 (31)
137 PF07814 WAPL: Wings apart-lik 89.3 24 0.00051 35.9 16.8 96 154-256 20-116 (361)
138 PF10165 Ric8: Guanine nucleot 89.2 2.9 6.2E-05 43.8 10.4 124 226-355 3-140 (446)
139 KOG1991 Nuclear transport rece 88.8 7.4 0.00016 44.1 13.5 134 180-328 390-536 (1010)
140 cd03567 VHS_GGA VHS domain fam 88.5 5.7 0.00012 35.0 10.3 92 222-324 19-116 (139)
141 KOG1062 Vesicle coat complex A 88.1 50 0.0011 37.1 19.7 85 151-242 331-423 (866)
142 KOG4535 HEAT and armadillo rep 87.9 1.5 3.3E-05 46.1 7.1 106 172-277 401-513 (728)
143 KOG1077 Vesicle coat complex A 87.9 19 0.00041 39.8 15.4 144 127-275 103-268 (938)
144 PF12755 Vac14_Fab1_bd: Vacuol 87.8 2.5 5.3E-05 35.0 7.1 93 221-323 3-95 (97)
145 PF06371 Drf_GBD: Diaphanous G 87.7 1.6 3.5E-05 39.2 6.6 88 186-276 88-186 (187)
146 KOG1061 Vesicle coat complex A 87.5 8.6 0.00019 42.5 12.8 135 170-326 57-191 (734)
147 cd03561 VHS VHS domain family; 86.8 5.4 0.00012 34.5 9.1 92 222-324 18-112 (133)
148 KOG1059 Vesicle coat complex A 86.5 34 0.00073 38.0 16.4 73 114-196 143-215 (877)
149 KOG2973 Uncharacterized conser 86.4 6.4 0.00014 39.4 10.2 115 206-334 5-121 (353)
150 COG5215 KAP95 Karyopherin (imp 86.4 54 0.0012 35.7 17.7 148 169-326 101-252 (858)
151 cd00197 VHS_ENTH_ANTH VHS, ENT 86.3 17 0.00037 30.3 11.6 91 128-231 16-113 (115)
152 PF08167 RIX1: rRNA processing 85.9 6.5 0.00014 35.4 9.4 103 169-277 32-143 (165)
153 KOG1789 Endocytosis protein RM 85.5 8.9 0.00019 44.2 11.7 138 178-325 1741-1884(2235)
154 PF10363 DUF2435: Protein of u 85.4 4.1 8.8E-05 33.4 7.1 68 206-277 5-72 (92)
155 KOG1242 Protein containing ada 85.4 34 0.00075 37.0 15.7 140 169-325 103-246 (569)
156 KOG4413 26S proteasome regulat 85.3 21 0.00045 36.4 13.1 199 116-326 129-335 (524)
157 PF12719 Cnd3: Nuclear condens 84.9 9.6 0.00021 37.4 10.8 112 204-326 26-145 (298)
158 KOG1242 Protein containing ada 84.2 24 0.00051 38.2 13.9 108 205-325 217-325 (569)
159 KOG2032 Uncharacterized conser 83.7 50 0.0011 35.1 15.6 102 171-277 267-371 (533)
160 PF14726 RTTN_N: Rotatin, an a 83.1 8.3 0.00018 32.1 8.1 92 177-271 2-94 (98)
161 smart00288 VHS Domain present 82.3 8.9 0.00019 33.3 8.4 91 223-324 19-111 (133)
162 cd03569 VHS_Hrs_Vps27p VHS dom 82.2 8.4 0.00018 34.0 8.3 107 207-324 6-114 (142)
163 KOG1087 Cytosolic sorting prot 82.0 13 0.00028 39.3 10.8 102 116-230 5-109 (470)
164 PF06012 DUF908: Domain of Unk 81.2 7.3 0.00016 39.0 8.5 65 177-242 237-306 (329)
165 KOG0567 HEAT repeat-containing 81.0 60 0.0013 32.0 14.5 152 172-339 79-262 (289)
166 KOG1061 Vesicle coat complex A 80.9 37 0.00081 37.7 14.1 65 169-236 128-192 (734)
167 KOG1967 DNA repair/transcripti 80.8 8.4 0.00018 43.5 9.2 124 191-324 855-982 (1030)
168 KOG2734 Uncharacterized conser 80.6 23 0.00051 37.2 11.8 143 173-324 237-400 (536)
169 COG5209 RCD1 Uncharacterized p 80.4 16 0.00034 35.3 9.8 150 176-334 113-277 (315)
170 cd00197 VHS_ENTH_ANTH VHS, ENT 79.9 15 0.00033 30.5 8.8 92 221-323 17-114 (115)
171 PF11701 UNC45-central: Myosin 79.6 9.2 0.0002 34.1 7.8 135 173-319 16-154 (157)
172 KOG3036 Protein involved in ce 79.4 26 0.00056 34.2 11.0 130 219-352 93-228 (293)
173 PF11707 Npa1: Ribosome 60S bi 79.4 33 0.00071 34.3 12.5 154 169-326 63-239 (330)
174 KOG2025 Chromosome condensatio 79.1 31 0.00068 38.3 12.6 96 170-272 93-188 (892)
175 cd03568 VHS_STAM VHS domain fa 78.7 6.3 0.00014 34.9 6.3 91 223-324 19-110 (144)
176 KOG2999 Regulator of Rac1, req 78.1 33 0.00072 37.0 12.2 128 193-326 113-244 (713)
177 PF04869 Uso1_p115_head: Uso1 77.8 18 0.0004 36.2 10.0 138 174-316 50-221 (312)
178 PF10363 DUF2435: Protein of u 77.4 4.6 0.0001 33.1 4.7 67 169-237 10-76 (92)
179 KOG2676 Uncharacterized conser 76.9 2.4 5.1E-05 43.2 3.4 62 182-243 376-439 (478)
180 PF08569 Mo25: Mo25-like; Int 76.6 67 0.0015 32.5 13.7 119 200-326 72-195 (335)
181 COG5231 VMA13 Vacuolar H+-ATPa 76.6 3.3 7.1E-05 41.7 4.2 81 238-324 346-428 (432)
182 KOG0213 Splicing factor 3b, su 76.1 19 0.00041 40.2 10.0 134 209-353 804-941 (1172)
183 PF00790 VHS: VHS domain; Int 75.8 12 0.00027 32.5 7.3 108 206-324 6-118 (140)
184 smart00638 LPD_N Lipoprotein N 75.8 39 0.00085 36.1 12.6 176 114-317 343-538 (574)
185 KOG1943 Beta-tubulin folding c 75.4 54 0.0012 38.0 13.5 143 171-324 553-705 (1133)
186 KOG2956 CLIP-associating prote 75.2 1.1E+02 0.0025 32.4 15.0 180 130-325 285-478 (516)
187 PF11791 Aconitase_B_N: Aconit 74.8 8 0.00017 34.8 5.7 92 129-234 20-124 (154)
188 KOG2999 Regulator of Rac1, req 73.3 1E+02 0.0022 33.6 14.2 134 208-348 87-224 (713)
189 PF06025 DUF913: Domain of Unk 73.2 1E+02 0.0022 31.7 14.3 149 180-334 2-193 (379)
190 PF14500 MMS19_N: Dos2-interac 72.2 52 0.0011 32.0 11.3 139 169-323 6-152 (262)
191 PF01347 Vitellogenin_N: Lipop 72.0 22 0.00047 38.3 9.6 177 114-317 381-582 (618)
192 PF01365 RYDR_ITPR: RIH domain 72.0 8.7 0.00019 35.6 5.7 96 175-277 74-169 (207)
193 PF05004 IFRD: Interferon-rela 71.7 1.1E+02 0.0024 30.4 15.7 149 173-327 54-218 (309)
194 KOG2259 Uncharacterized conser 71.0 6 0.00013 43.3 4.8 104 200-321 369-472 (823)
195 PF04078 Rcd1: Cell differenti 70.9 38 0.00082 33.2 9.9 101 175-276 109-217 (262)
196 KOG0212 Uncharacterized conser 70.3 1.1E+02 0.0024 33.3 13.7 126 147-277 264-406 (675)
197 KOG1020 Sister chromatid cohes 70.1 58 0.0013 39.1 12.5 93 169-277 823-921 (1692)
198 PF12830 Nipped-B_C: Sister ch 69.9 66 0.0014 29.4 11.0 61 172-240 18-81 (187)
199 KOG3665 ZYG-1-like serine/thre 69.8 1.9E+02 0.0041 32.3 16.5 121 227-357 494-616 (699)
200 COG5218 YCG1 Chromosome conden 69.8 1.1E+02 0.0023 33.7 13.5 93 170-269 99-191 (885)
201 KOG1077 Vesicle coat complex A 69.5 1.2E+02 0.0025 34.0 14.0 136 173-323 271-432 (938)
202 PF13251 DUF4042: Domain of un 69.4 17 0.00037 33.5 6.9 127 220-352 2-156 (182)
203 PF11707 Npa1: Ribosome 60S bi 69.3 1.3E+02 0.0028 30.1 14.7 159 174-351 38-214 (330)
204 KOG1248 Uncharacterized conser 68.7 2E+02 0.0044 33.8 16.2 201 112-324 673-898 (1176)
205 KOG0414 Chromosome condensatio 68.6 37 0.00081 39.5 10.5 122 173-316 934-1056(1251)
206 COG5231 VMA13 Vacuolar H+-ATPa 68.6 14 0.00031 37.3 6.5 65 169-233 363-428 (432)
207 COG5240 SEC21 Vesicle coat com 68.4 73 0.0016 34.8 12.0 101 171-276 422-554 (898)
208 COG5181 HSH155 U2 snRNP splice 68.4 33 0.00072 37.6 9.5 141 130-277 603-759 (975)
209 KOG0301 Phospholipase A2-activ 68.1 2E+02 0.0043 31.9 18.4 197 127-347 520-726 (745)
210 KOG1788 Uncharacterized conser 68.0 11 0.00023 43.6 6.0 125 225-362 663-801 (2799)
211 PF09758 FPL: Uncharacterised 68.0 36 0.00078 30.5 8.4 128 190-322 12-147 (149)
212 KOG1060 Vesicle coat complex A 67.9 56 0.0012 36.8 11.3 134 170-324 400-533 (968)
213 KOG4653 Uncharacterized conser 66.9 1.6E+02 0.0035 33.6 14.6 97 177-277 821-918 (982)
214 KOG2274 Predicted importin 9 [ 65.8 21 0.00045 40.4 7.7 123 132-255 572-713 (1005)
215 KOG2611 Neurochondrin/leucine- 63.8 83 0.0018 33.7 11.1 114 206-327 13-143 (698)
216 COG5098 Chromosome condensatio 63.7 58 0.0013 36.3 10.3 110 206-324 301-415 (1128)
217 KOG1240 Protein kinase contain 63.6 1.1E+02 0.0025 36.0 13.0 177 147-326 437-687 (1431)
218 PF08506 Cse1: Cse1; InterPro 63.5 67 0.0015 32.9 10.6 133 173-319 222-370 (370)
219 COG5209 RCD1 Uncharacterized p 63.4 47 0.001 32.2 8.6 62 173-234 157-219 (315)
220 KOG2137 Protein kinase [Signal 62.9 2.2E+02 0.0047 31.7 14.6 141 169-324 396-539 (700)
221 KOG4151 Myosin assembly protei 62.6 41 0.00089 37.5 9.2 145 170-323 592-740 (748)
222 PF06685 DUF1186: Protein of u 62.2 1.6E+02 0.0034 28.6 15.8 114 155-292 34-152 (249)
223 KOG4535 HEAT and armadillo rep 62.1 58 0.0013 34.8 9.7 158 172-344 359-528 (728)
224 PF14668 RICTOR_V: Rapamycin-i 62.0 18 0.00038 28.5 4.7 69 221-297 4-72 (73)
225 COG5656 SXM1 Importin, protein 60.7 2.9E+02 0.0064 31.3 18.3 82 170-256 468-549 (970)
226 PF10521 DUF2454: Protein of u 59.8 64 0.0014 31.5 9.4 119 205-324 120-253 (282)
227 smart00638 LPD_N Lipoprotein N 59.3 1.5E+02 0.0033 31.6 12.9 86 205-313 478-567 (574)
228 KOG2933 Uncharacterized conser 58.9 67 0.0015 32.3 9.2 129 131-276 88-233 (334)
229 cd03562 CID CID (CTD-Interacti 58.8 62 0.0014 26.8 7.9 89 173-273 16-104 (114)
230 KOG0915 Uncharacterized conser 57.7 4.3E+02 0.0094 32.3 18.2 125 171-308 1048-1185(1702)
231 COG5116 RPN2 26S proteasome re 57.2 96 0.0021 33.9 10.4 149 169-355 523-672 (926)
232 KOG1240 Protein kinase contain 57.1 1.2E+02 0.0026 35.9 11.7 171 146-325 475-726 (1431)
233 cd03572 ENTH_epsin_related ENT 57.0 49 0.0011 28.6 7.0 93 221-324 18-119 (122)
234 KOG2274 Predicted importin 9 [ 55.9 1.7E+02 0.0036 33.6 12.4 103 172-277 583-689 (1005)
235 KOG0211 Protein phosphatase 2A 55.7 76 0.0017 35.7 10.0 137 172-324 528-664 (759)
236 COG5215 KAP95 Karyopherin (imp 54.6 1.9E+02 0.0041 31.8 12.1 155 169-328 373-533 (858)
237 KOG0413 Uncharacterized conser 53.1 53 0.0011 37.9 8.1 110 203-324 575-685 (1529)
238 PLN03205 ATR interacting prote 52.9 2.7E+02 0.0058 29.4 12.5 132 172-306 382-546 (652)
239 KOG1078 Vesicle coat complex C 51.2 53 0.0012 36.8 7.7 82 146-232 423-531 (865)
240 PF07814 WAPL: Wings apart-lik 50.8 1.1E+02 0.0024 31.0 9.7 94 247-347 22-116 (361)
241 KOG0301 Phospholipase A2-activ 50.1 3.8E+02 0.0083 29.8 13.7 157 103-277 516-704 (745)
242 KOG2676 Uncharacterized conser 49.8 14 0.00031 37.8 2.9 54 224-277 376-429 (478)
243 KOG2073 SAP family cell cycle 49.7 4.3E+02 0.0094 30.2 14.6 200 111-323 144-395 (838)
244 PF04063 DUF383: Domain of unk 49.7 51 0.0011 30.6 6.4 148 220-380 11-181 (192)
245 PF04388 Hamartin: Hamartin pr 48.3 2.1E+02 0.0046 31.7 12.0 68 249-325 73-141 (668)
246 PF04869 Uso1_p115_head: Uso1 48.0 1.7E+02 0.0036 29.3 10.2 103 174-276 109-230 (312)
247 KOG1949 Uncharacterized conser 47.2 1.7E+02 0.0036 32.9 10.5 167 169-352 181-356 (1005)
248 PF09324 DUF1981: Domain of un 46.7 53 0.0012 26.3 5.4 55 292-351 14-69 (86)
249 KOG0414 Chromosome condensatio 46.6 1.9E+02 0.004 34.2 11.2 115 206-329 314-433 (1251)
250 cd03565 VHS_Tom1 VHS domain fa 46.6 65 0.0014 28.3 6.3 92 223-324 20-115 (141)
251 PF14225 MOR2-PAG1_C: Cell mor 46.5 2.4E+02 0.0051 27.5 10.8 147 152-325 108-255 (262)
252 KOG4464 Signaling protein RIC- 46.5 3.4E+02 0.0074 28.7 12.1 163 79-257 19-198 (532)
253 KOG2973 Uncharacterized conser 46.5 3.3E+02 0.0072 27.6 15.3 165 179-347 59-294 (353)
254 PF08324 PUL: PUL domain; Int 44.7 2.8E+02 0.0061 26.3 14.5 168 172-348 73-254 (268)
255 COG5240 SEC21 Vesicle coat com 44.7 1.4E+02 0.0031 32.7 9.4 81 146-231 444-553 (898)
256 KOG1020 Sister chromatid cohes 44.7 3.4E+02 0.0075 33.0 13.1 145 175-334 1134-1302(1692)
257 PF12830 Nipped-B_C: Sister ch 44.7 2.2E+02 0.0048 25.9 9.8 66 205-277 9-74 (187)
258 PF01347 Vitellogenin_N: Lipop 44.7 49 0.0011 35.6 6.3 108 174-315 502-613 (618)
259 KOG2021 Nuclear mRNA export fa 44.6 5.3E+02 0.011 29.4 15.6 153 223-388 665-826 (980)
260 PF11865 DUF3385: Domain of un 44.0 1.8E+02 0.004 25.9 9.0 134 174-324 23-157 (160)
261 PF08216 CTNNBL: Catenin-beta- 43.0 23 0.0005 30.1 2.7 31 283-313 75-105 (108)
262 PF04063 DUF383: Domain of unk 42.6 2.5E+02 0.0054 26.0 9.9 127 172-307 5-159 (192)
263 KOG4653 Uncharacterized conser 42.4 4.9E+02 0.011 30.0 13.3 149 169-324 734-918 (982)
264 PF10274 ParcG: Parkin co-regu 42.3 1.1E+02 0.0025 28.2 7.4 127 246-382 38-167 (183)
265 PF13001 Ecm29: Proteasome sta 42.3 2.4E+02 0.0051 30.0 10.9 151 120-277 260-443 (501)
266 PF01365 RYDR_ITPR: RIH domain 42.2 84 0.0018 28.9 6.7 121 193-325 32-170 (207)
267 COG5098 Chromosome condensatio 40.7 1.3E+02 0.0028 33.8 8.4 100 169-277 306-415 (1128)
268 PF10257 RAI16-like: Retinoic 40.2 1.6E+02 0.0034 29.9 8.8 124 173-304 21-181 (353)
269 PF06012 DUF908: Domain of Unk 39.9 82 0.0018 31.5 6.7 50 285-334 253-307 (329)
270 smart00567 EZ_HEAT E-Z type HE 39.6 33 0.00071 21.4 2.5 28 177-215 2-29 (30)
271 PF14663 RasGEF_N_2: Rapamycin 39.1 99 0.0022 26.1 6.1 38 205-243 9-46 (115)
272 KOG4151 Myosin assembly protei 38.6 2.2E+02 0.0048 32.0 10.0 138 180-325 560-700 (748)
273 KOG1087 Cytosolic sorting prot 38.4 1.2E+02 0.0026 32.3 7.7 72 205-276 39-111 (470)
274 PF12463 DUF3689: Protein of u 37.9 4.3E+02 0.0093 26.5 13.7 128 196-327 1-176 (303)
275 KOG2199 Signal transducing ada 37.9 1.5E+02 0.0031 31.0 7.9 47 169-215 52-99 (462)
276 KOG1822 Uncharacterized conser 37.8 1.7E+02 0.0037 36.2 9.5 105 169-277 883-988 (2067)
277 PF12783 Sec7_N: Guanine nucle 37.8 2.9E+02 0.0062 24.4 10.3 103 174-277 34-146 (168)
278 KOG2038 CAATT-binding transcri 37.4 2.5E+02 0.0054 31.8 10.1 68 248-327 306-373 (988)
279 PF08506 Cse1: Cse1; InterPro 37.2 1.7E+02 0.0036 30.0 8.5 83 142-228 264-370 (370)
280 KOG2025 Chromosome condensatio 36.2 6.9E+02 0.015 28.3 13.7 126 177-319 61-188 (892)
281 KOG1820 Microtubule-associated 35.6 59 0.0013 36.9 5.2 69 169-237 378-447 (815)
282 KOG1967 DNA repair/transcripti 35.3 92 0.002 35.7 6.5 99 169-270 916-1017(1030)
283 PF04499 SAPS: SIT4 phosphatas 34.3 51 0.0011 34.9 4.3 41 286-326 53-94 (475)
284 KOG1243 Protein kinase [Genera 32.5 3.3E+02 0.0071 30.4 10.0 73 243-325 327-399 (690)
285 KOG1086 Cytosolic sorting prot 32.0 6.5E+02 0.014 26.8 12.3 58 171-228 54-118 (594)
286 smart00582 RPR domain present 32.0 1.2E+02 0.0026 25.1 5.6 57 171-237 9-65 (121)
287 KOG1943 Beta-tubulin folding c 32.0 6.1E+02 0.013 29.9 12.3 140 170-324 349-500 (1133)
288 KOG2062 26S proteasome regulat 32.0 3.8E+02 0.0082 30.4 10.4 149 169-355 526-675 (929)
289 KOG2611 Neurochondrin/leucine- 31.9 6.9E+02 0.015 27.1 15.1 132 170-308 19-165 (698)
290 PF03130 HEAT_PBS: PBS lyase H 31.9 20 0.00042 22.3 0.5 26 178-214 1-26 (27)
291 PF11043 DUF2856: Protein of u 31.7 1.5E+02 0.0033 23.9 5.5 43 339-381 19-66 (97)
292 KOG1078 Vesicle coat complex C 31.3 1.3E+02 0.0027 34.0 6.7 98 173-277 403-532 (865)
293 KOG1525 Sister chromatid cohes 31.2 1E+03 0.022 28.8 17.1 204 112-324 122-405 (1266)
294 PF13001 Ecm29: Proteasome sta 31.1 1.8E+02 0.0038 31.0 7.8 65 173-240 385-450 (501)
295 PF14726 RTTN_N: Rotatin, an a 30.3 2.6E+02 0.0056 23.2 7.0 92 219-318 2-94 (98)
296 PF13764 E3_UbLigase_R4: E3 ub 29.8 8.9E+02 0.019 27.7 14.9 101 174-276 286-405 (802)
297 PLN03076 ARF guanine nucleotid 29.7 4.5E+02 0.0099 32.8 11.6 95 173-277 1148-1253(1780)
298 KOG2199 Signal transducing ada 28.1 2.9E+02 0.0062 28.9 8.2 109 205-324 8-118 (462)
299 KOG2933 Uncharacterized conser 27.9 2.6E+02 0.0057 28.2 7.7 108 206-326 90-201 (334)
300 PF14663 RasGEF_N_2: Rapamycin 27.5 3.7E+02 0.0081 22.6 7.8 78 296-377 9-90 (115)
301 PF08216 CTNNBL: Catenin-beta- 26.5 90 0.0019 26.5 3.7 39 223-262 65-103 (108)
302 KOG2032 Uncharacterized conser 26.1 5.6E+02 0.012 27.6 10.1 115 202-325 252-372 (533)
303 PF08389 Xpo1: Exportin 1-like 26.1 1.9E+02 0.004 24.2 5.8 129 176-319 2-148 (148)
304 TIGR00117 acnB aconitate hydra 25.9 2.6E+02 0.0055 32.0 8.0 93 127-232 21-125 (844)
305 PF11894 DUF3414: Protein of u 25.4 2.1E+02 0.0045 35.3 7.9 83 152-234 537-640 (1691)
306 KOG1243 Protein kinase [Genera 24.8 1.3E+02 0.0029 33.3 5.5 72 201-277 327-398 (690)
307 PF04388 Hamartin: Hamartin pr 24.7 1.9E+02 0.0042 32.0 6.9 80 175-255 81-161 (668)
308 PF01603 B56: Protein phosphat 24.5 2.7E+02 0.006 28.7 7.7 67 288-354 126-207 (409)
309 PF07571 DUF1546: Protein of u 24.5 3E+02 0.0066 22.2 6.4 52 175-231 19-76 (92)
310 PF12911 OppC_N: N-terminal TM 24.4 86 0.0019 22.5 2.9 23 4-26 13-35 (56)
311 PF01417 ENTH: ENTH domain; I 24.3 2.1E+02 0.0045 24.2 5.7 64 219-292 18-82 (125)
312 PRK14015 pepN aminopeptidase N 24.2 1.1E+03 0.025 27.0 15.9 137 170-319 723-873 (875)
313 KOG0567 HEAT repeat-containing 23.8 5.6E+02 0.012 25.4 9.0 61 247-323 219-279 (289)
314 KOG3665 ZYG-1-like serine/thre 23.7 1.4E+02 0.003 33.4 5.5 94 178-272 597-692 (699)
315 KOG0211 Protein phosphatase 2A 23.2 5.9E+02 0.013 28.9 10.3 101 170-277 245-345 (759)
316 PF08324 PUL: PUL domain; Int 23.0 4.8E+02 0.01 24.7 8.6 165 103-277 34-231 (268)
317 PLN03205 ATR interacting prote 22.9 1.5E+02 0.0031 31.2 5.1 124 206-337 325-455 (652)
318 PF12612 TFCD_C: Tubulin foldi 22.4 2.4E+02 0.0053 25.7 6.2 12 204-215 70-81 (193)
319 TIGR02302 aProt_lowcomp conser 22.2 1.8E+02 0.0039 33.2 6.1 62 106-168 521-607 (851)
320 KOG2150 CCR4-NOT transcription 21.9 2E+02 0.0042 31.3 5.9 64 100-163 108-190 (575)
321 PF14500 MMS19_N: Dos2-interac 21.5 7.5E+02 0.016 23.9 10.7 65 251-325 4-70 (262)
322 KOG1060 Vesicle coat complex A 21.3 1.3E+03 0.028 26.6 13.5 39 151-189 90-135 (968)
323 KOG3380 Actin-related protein 21.2 1.2E+02 0.0027 27.2 3.6 80 171-258 64-149 (152)
324 PF08389 Xpo1: Exportin 1-like 20.6 2.1E+02 0.0045 23.9 5.1 69 112-186 67-148 (148)
325 KOG2021 Nuclear mRNA export fa 20.5 1.3E+03 0.029 26.4 17.3 92 105-198 167-267 (980)
326 PF13118 DUF3972: Protein of u 20.4 5.4E+02 0.012 22.5 7.3 59 308-375 61-124 (126)
327 PF12074 DUF3554: Domain of un 20.2 8.4E+02 0.018 24.0 15.3 175 143-326 33-237 (339)
No 1
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-44 Score=348.75 Aligned_cols=298 Identities=32% Similarity=0.443 Sum_probs=255.7
Q ss_pred CCChHHHHHhHhhcC--CCCCcccc--------ccccCCCCHHHHHHhHHHHHHHHHHcC---------CCChHHHHHH-
Q 016423 76 FSSIDGMLQWAIGHS--DPAKLKET--------AQDVQRLSPSELKKRQMEIKELMEKLK---------TPSDAQLIQI- 135 (390)
Q Consensus 76 ~~~~~gLLkwsi~~s--~~~~~~~~--------~~~~~~~s~e~l~~r~~~L~eal~~~~---------~~~d~~~Mk~- 135 (390)
+++|+|+++|++.++ .|+.+... ..... ++ +++++|+.++|...+ ++...+.|+.
T Consensus 11 ~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~ 85 (342)
T KOG2160|consen 11 PPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLK--DE---KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMI 85 (342)
T ss_pred CccccchhhcccccccccCCCchhhhccchhhhhhhcc--Cc---ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhh
Confidence 688999999999999 55443110 00111 12 248999999998764 1223345555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc
Q 016423 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203 (390)
Q Consensus 136 ~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~ 203 (390)
++.+++.+++++++|+.|||+|++|||+||||| .+|+++++.||+.|+|+|||++||||++|+.+++.
T Consensus 86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 677788899999999999999999999999999 67899999999999999999999999999999999
Q ss_pred CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 204 GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 204 g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
|++++|+.+|++++ ..+|.||+|||||+||||+|++.+|...+|+.+|+.++++++.++++++||+||+++|+.
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~----- 240 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ----- 240 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-----
Confidence 99999999999765 578999999999999999999999999999999999999977799999999999999996
Q ss_pred CCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhh
Q 016423 283 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDY 362 (390)
Q Consensus 283 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey 362 (390)
.+....+.+...++...+.++..+.+.++.|+++.++..++..-....+.+...++++..++.+.+.+...+..+++.+|
T Consensus 241 ~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l 320 (342)
T KOG2160|consen 241 EDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQL 320 (342)
T ss_pred hhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555557888999999999999999999999999999998765444446666788999999999999988777889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 016423 363 AMDVEALRREVELIFFRKLDD 383 (390)
Q Consensus 363 ~~dl~~lr~e~~~~~~~~~~~ 383 (390)
++++...+-|+..+|+++++.
T Consensus 321 ~~~l~~~~~e~~~~~~~~~~~ 341 (342)
T KOG2160|consen 321 VNSLWEICGEVPSILRKLLGS 341 (342)
T ss_pred HHHHHHHhcccHHHHHHHhcc
Confidence 999999999999999999874
No 2
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=99.81 E-value=6.1e-20 Score=150.37 Aligned_cols=87 Identities=33% Similarity=0.522 Sum_probs=70.2
Q ss_pred CChHHHHHhHhhcCCCCCccccccccCCCCHHHHHHhHHHHHHHHHHc-CCCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 016423 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQ 155 (390)
Q Consensus 77 ~~~~gLLkwsi~~s~~~~~~~~~~~~~~~s~e~l~~r~~~L~eal~~~-~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd 155 (390)
++|+|||||||+||.++...+.+ ...++.+ +|++|..++|+.+ ++|+|+++||+++++|.+++.++|+|+.|||
T Consensus 3 ~~l~~LLkWsI~ns~~~~~~~~~-~~~~~~~----~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald 77 (92)
T PF08609_consen 3 PNLNGLLKWSIENSTTSASDAPP-SAEQPDE----ERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALD 77 (92)
T ss_pred HHHHHHHHHHHHcCCCCcccccc-CcCCchh----hhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 57999999999999544321111 1122222 2677788887776 5999999999999999999999999999999
Q ss_pred HHHHhhccccccc
Q 016423 156 ELLILVEPIDNAN 168 (390)
Q Consensus 156 ~Le~lve~IDnAn 168 (390)
+|++|||+|||||
T Consensus 78 ~le~LVE~IDNAN 90 (92)
T PF08609_consen 78 NLEELVENIDNAN 90 (92)
T ss_pred HHHHHHHcccccc
Confidence 9999999999998
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.5e-17 Score=171.47 Aligned_cols=170 Identities=22% Similarity=0.264 Sum_probs=147.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+|.|+++.|+++|.|+||+++...|.+++.++++|++++|+.++..... ...+.++|+||++|||..|....-.....
T Consensus 159 ~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~i 238 (514)
T KOG0166|consen 159 QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPI 238 (514)
T ss_pred HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 78899999999999999999999999999999999999999999987764 67899999999999997444443345688
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
++.|..++++. |..+...|||+|+||+ ++.++....+++.|+|+.|+++|.+++..++..||++++++++...
T Consensus 239 Lp~L~~ll~~~--D~~Vl~Da~WAlsyLs-----dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 239 LPALLRLLHST--DEEVLTDACWALSYLT-----DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHHh-----cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence 99999999987 7889999999999999 4678889999999999999999999999999999999999998776
Q ss_pred hHHHHHHhhCCcHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERL 346 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~L 346 (390)
...+.+. .+|+-+.|..|
T Consensus 312 ~QTq~vi-~~~~L~~l~~l 329 (514)
T KOG0166|consen 312 EQTQVVI-NSGALPVLSNL 329 (514)
T ss_pred HHHHHHH-hcChHHHHHHH
Confidence 6666666 56654444333
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.70 E-value=4.4e-17 Score=159.21 Aligned_cols=170 Identities=20% Similarity=0.260 Sum_probs=144.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH--HHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~--~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
++|.+++.+||.+|.|+||+++...+.+++.++++|++.+|+.++.++.. .+.+.+.|.||+|||+..|....-....
T Consensus 164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq 243 (526)
T COG5064 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ 243 (526)
T ss_pred HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH
Confidence 78899999999999999999999999999999999999999999987654 6678999999999999544434434466
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+++|..++.+- |+.+...|+|+|+||. ++..+-...+++.|+.+.|+++|.+++..++..|++.++++++..
T Consensus 244 alpiL~KLiys~--D~evlvDA~WAiSYls-----Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 244 ALPILAKLIYSR--DPEVLVDACWAISYLS-----DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred HHHHHHHHHhhc--CHHHHHHHHHHHHHhc-----cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 799999999986 7778999999999998 355566788999999999999999999999999999999999866
Q ss_pred hhHHHHHHhhCCcHHHHHHH
Q 016423 327 TTEALVLKDFCGLDTALERL 346 (390)
Q Consensus 327 ~~~r~~~~~~~gL~~~L~~L 346 (390)
....+.+. .||..+.+..|
T Consensus 317 D~QTqviI-~~G~L~a~~~l 335 (526)
T COG5064 317 DDQTQVII-NCGALKAFRSL 335 (526)
T ss_pred ccceehhe-ecccHHHHHHH
Confidence 44444444 88875554444
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.7e-14 Score=147.57 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=142.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+|.++++.++..|..+||+++..+....+.++..|++|.|..+++... ...+..|.|+||+++.+++.-.++++.+|-
T Consensus 286 ~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l 365 (514)
T KOG0166|consen 286 DLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANL 365 (514)
T ss_pred HHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHccc
Confidence 7889999999999999999999999999999999999999999999554 457888999999999999999999999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
++.|+.+|++. +.++|..|+|+|+++++ .+.++....+++.|++++++.+|...|.++...+|.++.+|...++
T Consensus 366 ~p~Li~~l~~~--ef~~rKEAawaIsN~ts----~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 366 IPVLINLLQTA--EFDIRKEAAWAISNLTS----SGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHHHhcc--chHHHHHHHHHHHhhcc----cCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999986 78999999999999997 4678889999999999999999999999999999999999998764
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.50 E-value=1.2e-12 Score=152.32 Aligned_cols=199 Identities=18% Similarity=0.132 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHhhccccccc-----ccCCCCChHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHHHHhhcCCCH
Q 016423 147 LEDSQRALQELLILVEPIDNAN-----GQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFV 218 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~IDnAn-----~lL~s~~~~vR~~Aa~vLgta~QN---Np~~Q~~~le~g~l~~Ll~LL~s~~~ 218 (390)
.+-+..|+..|..++..-|+.. .+|.++++.++..+..+||++++. +...++.....|++|.|++|+.+.+.
T Consensus 544 ~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~ 623 (2102)
T PLN03200 544 PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKE 623 (2102)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCH
Confidence 3445555555555555544443 567788888888888888887663 22233444467999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchH
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 298 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~ 298 (390)
..+..|.|+|++++.+++.....+...||+++|+.+|++. +.++++.++|.|.+|+. ......+..+++.|+++
T Consensus 624 ~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~----~~~~~q~~~~v~~GaV~ 697 (2102)
T PLN03200 624 ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSR----SIKENRKVSYAAEDAIK 697 (2102)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHh----CCCHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999986 56689999999999995 23445556778999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHH
Q 016423 299 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE 352 (390)
Q Consensus 299 ~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~e 352 (390)
.|+++|++.|.++.+.|+.+|.+|++++ +.+..+...+++.++++.||+...+
T Consensus 698 pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 698 PLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLE 750 (2102)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChH
Confidence 9999999999999999999999999987 4566677688899999999876553
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=3.2e-12 Score=148.89 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=150.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc
Q 016423 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203 (390)
Q Consensus 136 ~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~ 203 (390)
.++.++.+...+ .+..+.+.|..++-++.+.. .+|.+.+.++|..++|+|..++.+++..++.+.+.
T Consensus 367 LV~Llr~k~p~~-vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ 445 (2102)
T PLN03200 367 LVKLLKPRDTKL-VQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR 445 (2102)
T ss_pred HHHHhCCCCCch-hHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 344444443222 23444555555454543322 68889999999999999999999999999999999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
|++|.|+++|.+++...+..|+++|+++..+++.....+.++||++.|+++|.++ +.++|..|+|.|++|+. .
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~-----~ 518 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCC-----H 518 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhC-----C
Confidence 9999999999998888999999999999999998888999999999999999986 67899999999999994 2
Q ss_pred CCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+..+..+.+.|+++.|+++|.+.+...++.|+.+|.+|+..+
T Consensus 519 ~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 519 SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Confidence 3334455668899999999999999999999999999997654
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.42 E-value=4.5e-13 Score=131.32 Aligned_cols=199 Identities=18% Similarity=0.158 Sum_probs=165.4
Q ss_pred ChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhhccccc-------cc------ccCCCCChHHHHHHHHHHHHHhhC
Q 016423 128 SDAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEPIDN-------AN------GQLNHPDTDIRKISAWILGKASQN 192 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~--~~~s~e~~~~aLd~Le~lve~IDn-------An------~lL~s~~~~vR~~Aa~vLgta~QN 192 (390)
.|...|.+++.+|.. .+.++|-...|.=.+.||.+--.. ++ .+|.|++..|+.-|...+|+++-.
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 344455555555543 223456666666667776653211 11 688999999999999999999999
Q ss_pred ChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHH
Q 016423 193 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 272 (390)
Q Consensus 193 Np~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LL 272 (390)
+....+.++.+|+++.+..+|++....+|..|.|.||+++-++....+++++.+-+++|+++|.+- +.++|..|||++
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a--e~k~kKEACWAi 393 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA--EYKIKKEACWAI 393 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH--HHHHHHHHHHHH
Confidence 988888899999999999999998888999999999999999999999999999999999999985 899999999999
Q ss_pred HHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHH
Q 016423 273 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 330 (390)
Q Consensus 273 s~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r 330 (390)
++..+.. ...|+....++++|+++.|.++|...|..+.+-+|.|+.+++..++..+
T Consensus 394 sNatsgg--~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~ 449 (526)
T COG5064 394 SNATSGG--LNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR 449 (526)
T ss_pred Hhhhccc--cCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHH
Confidence 9998732 2467888999999999999999999998999999999999999875443
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.33 E-value=2.1e-11 Score=100.96 Aligned_cols=118 Identities=21% Similarity=0.225 Sum_probs=107.6
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhh
Q 016423 199 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 278 (390)
Q Consensus 199 ~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~ 278 (390)
.+.+.|+++.|++++.+.+..++..++++|++++.+.+.....+...|+++.|..+|.++ +.+++..++++|++|+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~- 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAA- 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHcc-
Confidence 467889999999999988888999999999999999999999999999999999999986 67899999999999994
Q ss_pred hhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 279 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 279 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..+.....+.+.|+++.+++++..++..+++.++.+|.+|.
T Consensus 79 ----~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 ----GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ----CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 34456677888999999999999999999999999999886
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.25 E-value=8.7e-11 Score=97.21 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=97.4
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+|.++++.+|..|+++|++++.++|.....+++.|++|.|++++.+++..++..|+++|++++.+.+.....+...|+++
T Consensus 15 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 94 (120)
T cd00020 15 LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVP 94 (120)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChH
Confidence 45667789999999999999999999999999999999999999998889999999999999999888888888899999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
.|.+++.++ +.+++..++++|.+|+
T Consensus 95 ~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 95 KLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 999999986 6789999999999987
No 11
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.03 E-value=2.4e-08 Score=105.11 Aligned_cols=191 Identities=16% Similarity=0.187 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHHHhhccccccc----------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC
Q 016423 146 SLEDSQRALQELLILVEPIDNAN----------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnAn----------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s 215 (390)
+.|+...+.+.|..+.+..+-.. ..|.|+++.||..+++.|+.++.++....+.+.+.+.++.++.++.+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~ 130 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD 130 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC
Confidence 44555555566666666543322 67899999999999999999999999888889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcC
Q 016423 216 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 295 (390)
Q Consensus 216 ~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g 295 (390)
++.++...|+-+|+.+.++ +++.+.++..++...|..++..+ +.-+|.++..++.+++. ..++..+.+.+.|
T Consensus 131 ~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~-----~S~~~~~~~~~sg 202 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIAS-----HSPEAAEAVVNSG 202 (503)
T ss_pred CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHh-----cCHHHHHHHHhcc
Confidence 9999999999999999986 56667777888899999999874 23468889999999985 5677788889999
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHH
Q 016423 296 FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERL 346 (390)
Q Consensus 296 ~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~L 346 (390)
+++.++..|.++|.-++..++.+|..|+.. +...+-+. ..|+ +.....+
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~-~~gi~~~L~~~l 252 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLE-QQGIFDKLSNLL 252 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHH-hCCHHHHHHHHH
Confidence 999999999999999999999999999984 44555555 4454 4444433
No 12
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.2e-09 Score=108.33 Aligned_cols=170 Identities=12% Similarity=0.152 Sum_probs=145.4
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
..++.++|..|..||.+++-- ...+..+...|++.+|.+|-++.+..++..|+.||++++.. ..+.+.++..||+++|
T Consensus 136 mtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvL 213 (550)
T KOG4224|consen 136 MTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVL 213 (550)
T ss_pred cCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhh
Confidence 367888999898888888776 45777888899999999988888889999999999999644 5667788899999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcC--chHHHHHhhcCCChhHHHHHHHHHHHHHhcChhH
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF--FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 329 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g--~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~ 329 (390)
+.++.+. +..+|-.++..|+++.. +...++.+.+.+ +++.|++++..++..++-.|..||.+|+.+....
T Consensus 214 Vsll~s~--d~dvqyycttaisnIaV------d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 214 VSLLKSG--DLDVQYYCTTAISNIAV------DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred hhhhccC--ChhHHHHHHHHhhhhhh------hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 9999987 56689999999999984 556677888888 9999999999999999999999999999987777
Q ss_pred HHHHHhhCCcHHHHHHHHHHHHH
Q 016423 330 ALVLKDFCGLDTALERLRQQLQE 352 (390)
Q Consensus 330 r~~~~~~~gL~~~L~~Lr~~l~e 352 (390)
+...+ .+++...++.|++.+-.
T Consensus 286 ~eiv~-ag~lP~lv~Llqs~~~p 307 (550)
T KOG4224|consen 286 REIVE-AGSLPLLVELLQSPMGP 307 (550)
T ss_pred hHHHh-cCCchHHHHHHhCcchh
Confidence 66554 89999899988765443
No 13
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.6e-08 Score=100.55 Aligned_cols=169 Identities=16% Similarity=0.201 Sum_probs=140.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcC--cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g--~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|++.+.++|..++.+|++++=. ...+..+.+.+ .+|.|++|..+.++.++-.|-.||.++.-+..+ +..+.++|
T Consensus 215 sll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-q~eiv~ag 292 (550)
T KOG4224|consen 215 SLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-QREIVEAG 292 (550)
T ss_pred hhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-hhHHHhcC
Confidence 678999999999999999999655 55778888887 899999999999999999999999998766544 56778999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCC-hhHHHHHHHHHHHHHhc
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD-LDLQEKALAAIKNLLQL 325 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d-~~v~EkAL~aL~~L~~~ 325 (390)
|++.++++|+++ ..++....++.|.++.- +|-..-.+.+.||++.||.+|.-.| .+++-+|..+|++|+..
T Consensus 293 ~lP~lv~Llqs~--~~plilasVaCIrnisi------hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 293 SLPLLVELLQSP--MGPLILASVACIRNISI------HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred CchHHHHHHhCc--chhHHHHHHHHHhhccc------ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 999999999987 56688899999999983 5555566789999999999998875 45999999999999986
Q ss_pred ChhHHHHHHhhCCcHHHHHHHH
Q 016423 326 RTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 326 ~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
.+..+.+++..+.+....+.++
T Consensus 365 se~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHh
Confidence 6566777875666655555443
No 14
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.3e-08 Score=99.20 Aligned_cols=152 Identities=20% Similarity=0.136 Sum_probs=125.9
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
+.+.+=+..|..-|--.+-+ -..-..++..|++.+|+..+++++.++|.+|.+.|+..++|||+.|.++.+.||++.|.
T Consensus 94 s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 45566677888888888776 34556689999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC--CChhHHHHHHHHHHHHHhcChhHH
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQLRTTEA 330 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~~v~EkAL~aL~~L~~~~~~~r 330 (390)
.+|.++ .+...|+||+++|++|+. .++.....|...+-...|...+.+ .+..++-||+..+..|++......
T Consensus 173 ~~ls~~-~~~~~r~kaL~AissLIR-----n~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 173 KILSSD-DPNTVRTKALFAISSLIR-----NNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HHHccC-CCchHHHHHHHHHHHHHh-----cCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 999966 366789999999999996 344444455554448899999988 578899999999999997543333
Q ss_pred H
Q 016423 331 L 331 (390)
Q Consensus 331 ~ 331 (390)
.
T Consensus 247 d 247 (342)
T KOG2160|consen 247 D 247 (342)
T ss_pred h
Confidence 3
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.91 E-value=5.4e-08 Score=93.93 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=122.7
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
.+.+|.++..|..++|+. ...|..|+.+.+.|+++.+..+++++++.++.+|++|+.++.-+ .+++.... .-+-.++
T Consensus 23 ~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~Ik-~~i~~Vc 99 (254)
T PF04826_consen 23 STEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQIK-MYIPQVC 99 (254)
T ss_pred cCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHHHH-HHHHHHH
Confidence 357899999999999998 45689999999999999999999999999999999999998655 44445443 3344555
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHH
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 331 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~ 331 (390)
..++..+ .+..+|..++.+|.+|+. ..+....+. +.++.++.+|.+.+..++..++.+|.+|++.....+.
T Consensus 100 ~~~~s~~-lns~~Q~agLrlL~nLtv------~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~ 170 (254)
T PF04826_consen 100 EETVSSP-LNSEVQLAGLRLLTNLTV------TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRE 170 (254)
T ss_pred HHHhcCC-CCCHHHHHHHHHHHccCC------CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHH
Confidence 5555544 356689999999999974 333344443 4788999999999999999999999999987544555
Q ss_pred HHHhhCCcHHHHH
Q 016423 332 VLKDFCGLDTALE 344 (390)
Q Consensus 332 ~~~~~~gL~~~L~ 344 (390)
.+. ...+...+.
T Consensus 171 Ll~-~q~~~~~~~ 182 (254)
T PF04826_consen 171 LLS-AQVLSSFLS 182 (254)
T ss_pred HHh-ccchhHHHH
Confidence 443 444444443
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.76 E-value=8.6e-08 Score=102.73 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=147.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc--chHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~--a~~~f~~~g 246 (390)
.+|.+.++.++..|+.-|..+|-.+.+++..+.+.|+|++|+.+|.+.+.+|+..|.+|+-||+-+... +.-++.+.|
T Consensus 240 ~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~ 319 (717)
T KOG1048|consen 240 SMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELN 319 (717)
T ss_pred HHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcC
Confidence 678899999999999999999999999999999999999999999999999999999999999998766 788889999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc--------------CCChhHH
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------------SADLDLQ 312 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~--------------~~d~~v~ 312 (390)
|+..++++|.... |..++..+..++++|.+ .+..+..++. ..+..|..-+- ..+.++.
T Consensus 320 Gv~~l~~~Lr~t~-D~ev~e~iTg~LWNLSS------~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 320 GVPTLVRLLRHTQ-DDEVRELITGILWNLSS------NDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred ChHHHHHHHHhhc-chHHHHHHHHHHhcccc------hhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 9999999999642 55689999999999985 3334443333 33333333221 1146788
Q ss_pred HHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 016423 313 EKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEEDQRDYAMDV 366 (390)
Q Consensus 313 EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~el~~~e~~~ey~~dl 366 (390)
-.+..||.++...+...|+.++.-.|| +.++-.++.-+..-.-+....|-|.-+
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCi 446 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCI 446 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 999999999999888999999955554 666665554444332233444444443
No 17
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.53 E-value=1.1e-06 Score=92.76 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=121.1
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
-..+...+.+||-++-.++-.=...+.-+-...++.+|++++..+...+...++.||.|++-.|.+-+..|...||+..|
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 45677888888888887755433333333333678999999977767788999999999999999999999999999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
...+.++ +..+|.+++|.|+++.. +.++..+..+...-....++.+.+.+|..+||.++..|.+|++...+
T Consensus 467 ~s~~~~~--~~n~r~~~~~~Lr~l~f----~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 467 ESMLTDP--DFNSRANSLWVLRHLMF----NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHhcCC--CchHHHHHHHHHHHHHh----cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 9999987 67789999999999996 34445555555555566677788888999999999999999996433
No 18
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.51 E-value=1.6e-06 Score=85.84 Aligned_cols=189 Identities=23% Similarity=0.310 Sum_probs=134.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~----~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
++|.+++.-++..|+.+++.+....+....... .+.++.++..+.+.. .++..-|+.+++.++|. +.....|.+
T Consensus 112 ~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~ 189 (312)
T PF03224_consen 112 KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWK 189 (312)
T ss_dssp HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHh
Confidence 577889999999999999999888776555433 456788888887632 34568899999999977 666788889
Q ss_pred cCcHHHHHHHh-----cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHH
Q 016423 245 EAGDLMLQDIL-----GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAA 318 (390)
Q Consensus 245 ~gGl~~L~~lL-----~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~a 318 (390)
.||++.|..+| .+++.+..++=.++++++-|.. +++..+.+...++++.++++++.. ...+..-++.+
T Consensus 190 ~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 190 SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999999 3444688899999999998874 566677788889999999999775 56777778889
Q ss_pred HHHHHhcChh-HHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 016423 319 IKNLLQLRTT-EALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRRE 372 (390)
Q Consensus 319 L~~L~~~~~~-~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey~~dl~~lr~e 372 (390)
+.+|+...+. +...+- .|++.++++.|...- ..|| |-.+|++.|.+.
T Consensus 264 l~Nl~~~~~~~~~~~mv-~~~~l~~l~~L~~rk---~~De---dl~edl~~L~e~ 311 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMV-LCGLLKTLQNLSERK---WSDE---DLTEDLEFLKEI 311 (312)
T ss_dssp HHHTTSSSSTTHHHHHH-HH-HHHHHHHHHSS-----SSH---HHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHH-HccHHHHHHHHhcCC---CCCH---HHHHHHHHHHhh
Confidence 9999987653 455555 788877777764431 1233 444566555543
No 19
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.45 E-value=5.9e-06 Score=89.93 Aligned_cols=165 Identities=16% Similarity=0.160 Sum_probs=134.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
++|.+.+.++...+..+|..++-. +.++..+.+.|++|+|++++.+++..+...++.+|-||.-+ +.....++..|.+
T Consensus 297 ~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlI 374 (708)
T PF05804_consen 297 KCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLI 374 (708)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCc
Confidence 677899999999999999999655 55899999999999999999998888888899999998644 6668899999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC-CChhHHHHHHHHHHHHHhcCh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+.|+.+|.++ + .+.-++.+|++|+. +++.+..|...++++.++.++-. ++..+...++.++.+|+....
T Consensus 375 PkLv~LL~d~--~--~~~val~iLy~LS~------dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 375 PKLVELLKDP--N--FREVALKILYNLSM------DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHHHHhCCC--c--hHHHHHHHHHHhcc------CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 9999999875 2 45568899999984 66778889999999999997655 466666667778888888764
Q ss_pred hHHHHHHhhCCcHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERL 346 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~L 346 (390)
+.+.+...+||..++++.
T Consensus 445 -naqlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 445 -NAQLMCEGNGLQSLMKRA 462 (708)
T ss_pred -HHHHHHhcCcHHHHHHHH
Confidence 556777667777666543
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=2.2e-05 Score=77.92 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=129.6
Q ss_pred HHHHHHHhhccccccc------ccCCC-CChHHH---HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc--CCCHHH
Q 016423 153 ALQELLILVEPIDNAN------GQLNH-PDTDIR---KISAWILGKASQNNPLVQKQVLELGALSKLMKMVK--SSFVEE 220 (390)
Q Consensus 153 aLd~Le~lve~IDnAn------~lL~s-~~~~vR---~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~--s~~~~v 220 (390)
+|-.=.++|..|+.++ .++.+ .+.++| ..+++.|..++.|. .++..+.+.|+++.++.++. ++++.|
T Consensus 268 ~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p~V 346 (461)
T KOG4199|consen 268 ALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDPLV 346 (461)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCChHH
Confidence 3444457777888877 45543 455566 56777788887664 59999999999999999974 345667
Q ss_pred HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHH
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 300 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~L 300 (390)
-..++.+||-|+--.|.....|++.||-.+.++.++.......+|+++|++|.|++. ...+.+..++..|+ ..|
T Consensus 347 i~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~-----rs~~~~~~~l~~Gi-E~L 420 (461)
T KOG4199|consen 347 IQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV-----RSAENRTILLANGI-EKL 420 (461)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-----hhhhccchHHhccH-HHH
Confidence 788888999998888999999999999999999998654466799999999999996 34566777777775 445
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 301 VDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 301 v~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
+..-...+.++...+-.||.-|-++. .-|..|.
T Consensus 421 i~~A~~~h~tce~~akaALRDLGc~v-~lre~wt 453 (461)
T KOG4199|consen 421 IRTAKANHETCEAAAKAALRDLGCDV-YLREEWT 453 (461)
T ss_pred HHHHHhcCccHHHHHHHHHHhcCcch-hhHHHhc
Confidence 55556666677777777777776654 3455554
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.36 E-value=2.4e-05 Score=82.50 Aligned_cols=201 Identities=18% Similarity=0.165 Sum_probs=150.2
Q ss_pred HHHHHHHHHHcCCCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------------ccCCCCChHHH
Q 016423 114 QMEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------------GQLNHPDTDIR 179 (390)
Q Consensus 114 ~~~L~eal~~~~~~~-d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------------~lL~s~~~~vR 179 (390)
.+-|+..++...+.+ ..+.+.....-|..+ ++.-|.-++..+..+++.-+.+- .+|.+++..|.
T Consensus 59 ~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va 136 (503)
T PF10508_consen 59 CDILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVA 136 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHH
Confidence 345555555443322 233343444444443 34556666777777766654422 68899999999
Q ss_pred HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCC
Q 016423 180 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 259 (390)
Q Consensus 180 ~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~ 259 (390)
..|+.+|..++.+.+..+ .++..+.++.|..++...+..+|.+++..+..+.++.+.........|.++.+...|.++
T Consensus 137 ~~A~~~L~~l~~~~~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d- 214 (503)
T PF10508_consen 137 KAAIKALKKLASHPEGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD- 214 (503)
T ss_pred HHHHHHHHHHhCCchhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-
Confidence 999999999998766554 577888899999999887778899999999999999999999988889999999999985
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChh------HHHHHHHHHHHHHhc
Q 016423 260 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD------LQEKALAAIKNLLQL 325 (390)
Q Consensus 260 ~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~------v~EkAL~aL~~L~~~ 325 (390)
|+-+|..++-+|+.|+. .+...+.+.+.|+++.|+.++...+.+ +.--.+...++++..
T Consensus 215 -DiLvqlnalell~~La~------~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 215 -DILVQLNALELLSELAE------TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred -cHHHHHHHHHHHHHHHc------ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 88899999999999994 566688899999999999999765222 223333555566653
No 22
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.32 E-value=1.8e-05 Score=86.26 Aligned_cols=142 Identities=16% Similarity=0.138 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCC
Q 016423 180 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 259 (390)
Q Consensus 180 ~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~ 259 (390)
..|..+|.+++ .|+.+...+.+.|+++.|+++|++++.++..-++..|..|.- +..+.....+.|.++.|..++.++
T Consensus 267 rv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~- 343 (708)
T PF05804_consen 267 RVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSE- 343 (708)
T ss_pred HHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCC-
Confidence 35677899994 557899999999999999999999988888888888887753 456788888999999999999987
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 260 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 260 ~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
+..++..|+.+|.+|+. +++.+..+++.|+++.|+.+|..+ +.+..++.+|.+|.... .++..+.
T Consensus 344 -~~~l~~~aLrlL~NLSf------d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~ 408 (708)
T PF05804_consen 344 -NEDLVNVALRLLFNLSF------DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFA 408 (708)
T ss_pred -CHHHHHHHHHHHHHhCc------CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHh
Confidence 46689999999999984 788899999999999999999865 46677999999988753 5777776
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=2.8e-05 Score=77.10 Aligned_cols=170 Identities=12% Similarity=0.089 Sum_probs=139.0
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-HHH---HHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEA---VKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-~vr---~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
-+|++-..++-.|++++=+|..||. +.+.||+..|+.++.+.+. .+| ..++.-|+.|. ++.......++.||.+
T Consensus 254 ~dp~~L~~l~~tl~~lAVr~E~C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~ 331 (461)
T KOG4199|consen 254 IDPDSLVSLSTTLKALAVRDEICKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLD 331 (461)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChH
Confidence 3488889999999999999998887 7789999999999998653 344 45676777665 5567788999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhcCh
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~~~ 327 (390)
.|+.++....+++.+...++..|+-|+- -.|+.-..+++.|.-...++.++.. ...+|..+..++.+++..+.
T Consensus 332 ~ii~l~~~h~~~p~Vi~~~~a~i~~l~L-----R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 332 KIITLALRHSDDPLVIQEVMAIISILCL-----RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHh-----cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999986555678889999999999984 4677778889999999999999664 67999999999999999877
Q ss_pred hHHHHHHhhCCcHHHHHHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERLRQQLQ 351 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~Lr~~l~ 351 (390)
..+..+- ..|.+.++..=+..++
T Consensus 407 ~~~~~~l-~~GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 407 ENRTILL-ANGIEKLIRTAKANHE 429 (461)
T ss_pred hccchHH-hccHHHHHHHHHhcCc
Confidence 7777776 7888888776655544
No 24
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=98.24 E-value=1.1e-05 Score=77.74 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 253 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~ 253 (390)
.+.+...|..+|--++..+|.+|..|....++..|+.+|.. .+..++..++.++.+++.++|+++..|...+|+..+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 44467789999999999999999999999999999999954 34678999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHHHHh
Q 016423 254 ILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 254 lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
++++.+.+..+|.|.+-+|+-.+
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHH
Confidence 99988788889888875555444
No 25
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.10 E-value=7.5e-06 Score=56.66 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=38.4
Q ss_pred ChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016423 193 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 233 (390)
Q Consensus 193 Np~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR 233 (390)
||..++.+++.|++|+|+++|++.+..++..|+|||++|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999999999999999975
No 26
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.07 E-value=0.00062 Score=70.44 Aligned_cols=195 Identities=19% Similarity=0.169 Sum_probs=130.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+|++++.-|...|+.+++.+++-.+.........-.++-|...+++. +...+.-++.+++.|+|..+. ...|.+.+|
T Consensus 108 ~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~-R~~f~~~~~ 186 (429)
T cd00256 108 NLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEY-RFAFVLADG 186 (429)
T ss_pred HHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchH-HHHHHHccC
Confidence 677888888999999999999876553222111111334455566543 344566778899999998444 578888999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhcC
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~~ 326 (390)
++.|..+|+....+..++=++++++.-|.. +++..+.+...++++.++++++.. -..+..-++.++.+|+..+
T Consensus 187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF------~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 187 VPTLVKLLSNATLGFQLQYQSIFCIWLLTF------NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHhc------cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 999999998654467889999999998874 333455667789999999999875 4566666777888888742
Q ss_pred ------hhHHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 016423 327 ------TTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF 377 (390)
Q Consensus 327 ------~~~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey~~dl~~lr~e~~~~~ 377 (390)
..+...+- .||+.+.+..|..+- ..|+ |-.+||..|.+.++..+
T Consensus 261 ~~~~~~~~~~~~mv-~~~l~~~l~~L~~rk---~~De---dL~edl~~L~e~L~~~~ 310 (429)
T cd00256 261 VDREVKKTAALQMV-QCKVLKTLQSLEQRK---YDDE---DLTDDLKFLTEELKNSV 310 (429)
T ss_pred cccchhhhHHHHHH-HcChHHHHHHHhcCC---CCcH---HHHHHHHHHHHHHHHHH
Confidence 12333444 577767666553320 0122 34455655665555543
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.06 E-value=0.00023 Score=68.86 Aligned_cols=190 Identities=17% Similarity=0.138 Sum_probs=134.5
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHH
Q 016423 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLV 196 (390)
Q Consensus 117 L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~ 196 (390)
+++.+..+....|+-.-..++-.+.+....+..+...-+ +..|.--..+|+++++.+|..|.+++.+++.+ .+.
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-----~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en 87 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-----LGGISLIGSLLNDPNPSVREKALNALNNLSVN-DEN 87 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-----cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhh
Confidence 455555554445566555555555554433333221000 00011111578899999999999999999655 557
Q ss_pred HHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 016423 197 QKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 274 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~ 274 (390)
|..+-. .++.+++...+. +.+++..++.+|.+|...+.. +..+ .+.++.+..+|.+. +.++|..++.+|.+
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l--~~~i~~ll~LL~~G--~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHML--ANYIPDLLSLLSSG--SEKTKVQVLKVLVN 160 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhH--HhhHHHHHHHHHcC--ChHHHHHHHHHHHH
Confidence 776543 588888876654 357899999999999765333 3333 46899999999986 67789999999999
Q ss_pred HhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhc
Q 016423 275 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 275 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~ 325 (390)
|+. +++....++...++..++.++... +.++...++..+.+|...
T Consensus 161 LS~------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 161 LSE------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred hcc------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 984 788888888899999999999886 778899999999998653
No 28
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.05 E-value=7.2e-06 Score=60.07 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 231 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsL 231 (390)
+.||..|+|+||++++..+.....+. ..++|.|+.+|.++++.||.+|.|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47999999999999999888777644 45799999999988889999999999975
No 29
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00014 Score=78.97 Aligned_cols=227 Identities=16% Similarity=0.163 Sum_probs=165.6
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-----------------ccCCC-CChHHHHHHHHHHHH
Q 016423 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-----------------GQLNH-PDTDIRKISAWILGK 188 (390)
Q Consensus 127 ~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-----------------~lL~s-~~~~vR~~Aa~vLgt 188 (390)
.++.-.||+.++=+.+.+ ++-. .|+.|.++||.+-..| .+|++ .+.+|.-.||.+|..
T Consensus 163 ~sasSk~kkLL~gL~~~~-Des~---Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRalty 238 (1051)
T KOG0168|consen 163 SSASSKAKKLLQGLQAES-DESQ---QLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTY 238 (1051)
T ss_pred ccchHHHHHHHHhccccC-ChHH---HHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 344558999988888764 3333 4566777788777766 67776 457899999999999
Q ss_pred HhhCChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHH
Q 016423 189 ASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 267 (390)
Q Consensus 189 a~QNNp~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~K 267 (390)
++---|.+-..++++++||.|+.-|-. +-..|.+.+|.||--|-|.||. +...+||+...+..|.== .+-.||+
T Consensus 239 l~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFF--Si~aQR~ 313 (1051)
T KOG0168|consen 239 LCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFF--SIHAQRV 313 (1051)
T ss_pred HHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHH--HHHHHHH
Confidence 999999999999999999999876653 4468999999999999999987 456789998888777532 4568999
Q ss_pred HHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHH
Q 016423 268 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 268 A~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
|+....|.|.. ..++....+. ..+|.|..+|+..|....|.++-|+..++......++.+.+-|.. .+++...
T Consensus 314 AlaiaaN~Cks----i~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~ 386 (1051)
T KOG0168|consen 314 ALAIAANCCKS----IRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQ 386 (1051)
T ss_pred HHHHHHHHHhc----CCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHH
Confidence 99999999973 3555555553 579999999999999999999999999987543344445444442 1222222
Q ss_pred HHHHHhhh-hhhhhhhHHHHHHHH
Q 016423 348 QQLQEVML-EEDQRDYAMDVEALR 370 (390)
Q Consensus 348 ~~l~el~~-~e~~~ey~~dl~~lr 370 (390)
+-+. ... --....|+..|--+.
T Consensus 387 qLls-vt~t~Ls~~~~~~vIrmls 409 (1051)
T KOG0168|consen 387 QLLS-VTPTILSNGTYTGVIRMLS 409 (1051)
T ss_pred HHHh-cCcccccccchhHHHHHHH
Confidence 1111 111 224677877764444
No 30
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.01 E-value=7e-05 Score=70.05 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=108.5
Q ss_pred hcCCCCHHHHHHHHHHHHHhhccc---cccc--------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc
Q 016423 141 NNSTLSLEDSQRALQELLILVEPI---DNAN--------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 203 (390)
Q Consensus 141 ~~~~~s~e~~~~aLd~Le~lve~I---DnAn--------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~ 203 (390)
.+++.+=+.+..+|+.|+.++..- +... ..+++....|-..||.+|+.++..-...-+.+. .
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-D 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence 444455566666666666665543 1111 355666677889999999999988433333232 2
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
..+|.|++.+.+.+..++..|..+|-.++.+.+...... ...+...+.+. ++.+|..++..+..++..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~----- 161 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSK--NPQVREECAEWLAIILEK----- 161 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-----
Confidence 478999999999887889999999999999877222221 34566666666 678899999999998852
Q ss_pred CCCCchhhhh----cCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 284 HKVEPPLFRD----RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 284 ~~~~~~~l~~----~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+.....+.. ..+++.+..++...+.++|+.|-.++..+...-
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 2211222222 457888889999999999999999999998753
No 31
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.00 E-value=4.9e-05 Score=77.48 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=128.6
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHc
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 245 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~----g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~ 245 (390)
.....+..|+.-+++|++..+ -||..+..|.++ +++..|.+..++++.+|-.....||+|+|..|..+..+|.+.
T Consensus 50 ~i~~~~~tv~~~qssC~A~~s-k~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l 128 (604)
T KOG4500|consen 50 GIMTASDTVYLFQSSCLADRS-KNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNL 128 (604)
T ss_pred ceeeccchhhhhhHHHHHHHh-hhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhc
Confidence 334567789999999999997 557777777776 567788888888878899999999999999999999999999
Q ss_pred CcHHHHHHHhcCC-----ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHH
Q 016423 246 AGDLMLQDILGNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAA 318 (390)
Q Consensus 246 gGl~~L~~lL~s~-----~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~a 318 (390)
||-+++++.|..- ....++-.-++.+|++-+ ..+.+.+..+.+.|+++.|+..+.-+ +....|+.+..
T Consensus 129 gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~-----l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~ 203 (604)
T KOG4500|consen 129 GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI-----LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAP 203 (604)
T ss_pred CCceehHhhhccccccCCccHHHHHHHHHHHHHHhh-----CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhc
Confidence 9988888888631 123455555666666665 25677888899999999999888554 78888999888
Q ss_pred HHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHH
Q 016423 319 IKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQ 351 (390)
Q Consensus 319 L~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~ 351 (390)
..+|++.-...-..+-..|.+ ...+..|.+..+
T Consensus 204 f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~ 237 (604)
T KOG4500|consen 204 FFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVR 237 (604)
T ss_pred cccHHHHHHHhhhhhhccchHHHHHHHHHHHhhc
Confidence 888876521100111124555 344455544433
No 32
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00052 Score=74.30 Aligned_cols=190 Identities=21% Similarity=0.214 Sum_probs=144.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc---------------------------ccccc---ccCCCCChHHHHH
Q 016423 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP---------------------------IDNAN---GQLNHPDTDIRKI 181 (390)
Q Consensus 132 ~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~---------------------------IDnAn---~lL~s~~~~vR~~ 181 (390)
-|+-.+.+|+....++|-...+||.+.-++-. -||-. .++...+=.||..
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~ 141 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLY 141 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhH
Confidence 45555555555555555555555555444432 22222 4556677889999
Q ss_pred HHHHHHHHhhC-ChHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCC
Q 016423 182 SAWILGKASQN-NPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 259 (390)
Q Consensus 182 Aa~vLgta~QN-Np~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~ 259 (390)
|...|.++..+ -+++|+.++.. -++.+|+.+|.+.-..+|-.|++-|+.++|+|+.-|+.+.=.|.+.-|..++....
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999888 67899999988 57999999999877889999999999999999999998877899999999997432
Q ss_pred --hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC---C----------hhHHHHHHHHHHHHHh
Q 016423 260 --FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D----------LDLQEKALAAIKNLLQ 324 (390)
Q Consensus 260 --~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d----------~~v~EkAL~aL~~L~~ 324 (390)
+.--+.-.++++|.+|+. .+......|.+.++++.|.++|+.+ | ..-.-.+|.+|..|+.
T Consensus 222 g~dGgIVveDCL~ll~NLLK-----~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVs 296 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLK-----NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVS 296 (970)
T ss_pred CCCCcchHHHHHHHHHHHHh-----hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcC
Confidence 122367889999999995 5778889999999999999999664 2 1233457788888886
Q ss_pred cC
Q 016423 325 LR 326 (390)
Q Consensus 325 ~~ 326 (390)
-+
T Consensus 297 P~ 298 (970)
T KOG0946|consen 297 PG 298 (970)
T ss_pred CC
Confidence 43
No 33
>PRK09687 putative lyase; Provisional
Probab=97.86 E-value=0.00041 Score=68.00 Aligned_cols=133 Identities=12% Similarity=0.049 Sum_probs=70.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCccchHHHH----
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFY---- 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~L-L~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~---- 243 (390)
.+++++++.+|..|+|+||.+- ..+..|. ..++.|..+ +++++..||..|+.+|+.+....+.....+.
T Consensus 61 ~ll~~~d~~vR~~A~~aLg~lg-~~~~~~~-----~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~ 134 (280)
T PRK09687 61 ELCSSKNPIERDIGADILSQLG-MAKRCQD-----NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQ 134 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcC-CCccchH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHH
Confidence 4566777777777777777762 2111111 245666655 3344456677777777766433221101100
Q ss_pred ----------------------HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHH
Q 016423 244 ----------------------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 301 (390)
Q Consensus 244 ----------------------~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 301 (390)
....++.|..+|.++ +..+|..|++.|..+-. ....+++.|+
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~--------------~~~~~~~~L~ 198 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDP--NGDVRNWAAFALNSNKY--------------DNPDIREAFV 198 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCC--CHHHHHHHHHHHhcCCC--------------CCHHHHHHHH
Confidence 011344444555443 23345555555544420 1225666777
Q ss_pred HhhcCCChhHHHHHHHHHHHHH
Q 016423 302 DLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 302 ~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..|...+.+++..|+.+|+.+-
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHhcCCChHHHHHHHHHHHccC
Confidence 7777777788888777776643
No 34
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.79 E-value=9.5e-05 Score=61.85 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 178 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 178 vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
+|..-..+||+++.+|+.+|+.+.+.|+||.++..-.-+ ++-+|..|++||-+|+.+|+.+|..+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 567778999999999999999999999999999986544 3568999999999999999999887754
No 35
>PRK09687 putative lyase; Provisional
Probab=97.68 E-value=0.00077 Score=66.04 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=67.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCC
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~ 284 (390)
+++.|+.+|++++..||..|+++|+.+ +...+ ...+.|+.+|.+. +..+|..|++.|..+-
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~~~~--------~~~~~L~~~L~D~--~~~VR~~A~~aLg~~~-------- 220 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSN-KYDNP--------DIREAFVAMLQDK--NEEIRIEAIIGLALRK-------- 220 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC-CCCCH--------HHHHHHHHHhcCC--ChHHHHHHHHHHHccC--------
Confidence 578888888887778888888888887 11111 3467899999876 5668999999888753
Q ss_pred CCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 285 KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 285 ~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
...+++.|+..|.+++ ++..+..+|+.+-.
T Consensus 221 --------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 221 --------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred --------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 2368999999999876 56667766666553
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0027 Score=71.23 Aligned_cols=172 Identities=15% Similarity=0.105 Sum_probs=126.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.|++..-|.+|.-+|+.++-..+++=..-+. .+++..+..|++..+-||-.|+.||+-+-.++.|-.......--+
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 6788999999999999999998886544333221 467777777888888899999999999999999998888877778
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchH-HHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK-SVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~-~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+.|+..+.+.. .++++..|+..+-++..+ ..++...... .+++. .+.-++.+....++|.++.++++.+..
T Consensus 434 ~aL~~~ld~~~-~~rV~ahAa~al~nf~E~----~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A-- 505 (1075)
T KOG2171|consen 434 PALIALLDSTQ-NVRVQAHAAAALVNFSEE----CDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA-- 505 (1075)
T ss_pred HHHHHHhcccC-chHHHHHHHHHHHHHHHh----CcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--
Confidence 88999888774 789999999999999852 2333222222 24444 444556777899999999999999863
Q ss_pred hHHHHHHhhCCcHHHHHHHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERLRQQLQE 352 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~Lr~~l~e 352 (390)
+...|.+ =.+.+...|+.-+..
T Consensus 506 -A~~~F~p--Y~d~~Mp~L~~~L~n 527 (1075)
T KOG2171|consen 506 -AQEKFIP--YFDRLMPLLKNFLQN 527 (1075)
T ss_pred -HhhhhHh--HHHHHHHHHHHHHhC
Confidence 3444432 234555656555543
No 37
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.60 E-value=0.00083 Score=68.41 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=120.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHH---HHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLV---QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~---Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
++|...+.-+...+.|+|+.++++.+.. ++.-+. ...|-.++++ .++.-..-|..+|..++|. ++-...|..
T Consensus 121 ~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~ 196 (442)
T KOG2759|consen 121 NLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVI 196 (442)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeee
Confidence 5777788889899999999999885422 111222 2233344444 3445567788899999998 444788899
Q ss_pred cCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHH
Q 016423 245 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLL 323 (390)
Q Consensus 245 ~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~ 323 (390)
++|+..++.++.+.+.+..+|-..+|++.-|.. +|...+.+...+.++.|+.++++. ...|..-++.++.++.
T Consensus 197 adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF------n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 197 ADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF------NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred cCcchhhHHHHhccCcchhHHHHHHHHHHHhhc------CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999996555688999999999998874 566667788889999999999875 3455555566677777
Q ss_pred hcCh------hHHHHHHhhCCcHHHHHHHH
Q 016423 324 QLRT------TEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 324 ~~~~------~~r~~~~~~~gL~~~L~~Lr 347 (390)
.-++ +....+. .|++.+.+..|.
T Consensus 271 ~k~~~~~~~k~~~~~mv-~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 271 DKGPDRETKKDIASQMV-LCKVLKTLQSLE 299 (442)
T ss_pred ccCchhhHHHHHHHHHH-hcCchHHHHHHH
Confidence 7663 2333444 677766666553
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.59 E-value=0.0028 Score=71.53 Aligned_cols=162 Identities=14% Similarity=0.131 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhhccccccc---ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHH
Q 016423 147 LEDSQRALQELLILVEPIDNAN---GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK 223 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~IDnAn---~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~k 223 (390)
.+-|..|.+.|.++.+...... ..|.++++.||..|+.+|+.+-. +-.+.|+..|.+++..||..
T Consensus 666 ~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~ 733 (897)
T PRK13800 666 AAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIE 733 (897)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHH
Confidence 3445566666666655443322 56677777788887777776521 12334556666666666666
Q ss_pred HHHHHHHH---------hhCCccc-----hHHHHHc-----CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh-----
Q 016423 224 ALYTVSSL---------IRNNLAG-----QEMFYVE-----AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----- 279 (390)
Q Consensus 224 AL~ALSsL---------iR~~~~a-----~~~f~~~-----gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~----- 279 (390)
|+++|+.+ +.+..+- ...+... .+++.|..+++++ +..+|..|+..|..+-...
T Consensus 734 Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~--d~~VR~aA~~aLg~~g~~~~~~~~ 811 (897)
T PRK13800 734 AVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDP--DPLVRAAALAALAELGCPPDDVAA 811 (897)
T ss_pred HHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCC--CHHHHHHHHHHHHhcCCcchhHHH
Confidence 66666643 1110000 1111111 1256677777765 4667777777776654210
Q ss_pred ----hhcCCCCCchh-------hhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 280 ----LENMHKVEPPL-------FRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 280 ----l~~~~~~~~~~-------l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
+.+.++..+.. +-....++.|+.+|..++..||..|+.+|..+
T Consensus 812 l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 812 ATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 11111111111 11234456666666666666666666666654
No 39
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.56 E-value=0.0008 Score=72.86 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=101.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
+|..+.+|.+..+.++..|-+-|-=+|+++..+...+...||+..|+.+|.++ ...+++.||+.|.+|+.. ..+.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~---~~~~ 309 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFG---KSTD 309 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhcc---cCCc
Confidence 78899999998888999888888889999999999999999999999999987 566899999999999953 2344
Q ss_pred CCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhc
Q 016423 286 VEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~ 325 (390)
+.+-.+.+.+=++.++.+|... |.+++|.+..+|++|.+.
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 5667788899999999999874 899999999999999985
No 40
>PF05536 Neurochondrin: Neurochondrin
Probab=97.40 E-value=0.008 Score=64.26 Aligned_cols=184 Identities=15% Similarity=0.111 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc----------------ccCCC-------CChHHHHHHHHH
Q 016423 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN----------------GQLNH-------PDTDIRKISAWI 185 (390)
Q Consensus 129 d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn----------------~lL~s-------~~~~vR~~Aa~v 185 (390)
..+.+++|+..|+... .++|..+|--+-.++..-|.-. ++|.+ +....+.-|..+
T Consensus 3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 3466778888887765 6777777777777777654211 67765 456789999999
Q ss_pred HHHHhhCChHHH--HHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhH
Q 016423 186 LGKASQNNPLVQ--KQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 262 (390)
Q Consensus 186 Lgta~QNNp~~Q--~~~le~g~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~ 262 (390)
|++.+. -|... ..+. +-+|.|+.++.+.+. ++..-|+..|.+++ .+|.++.+|.+.|+++.|.+++.+. .
T Consensus 81 L~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---~ 153 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---S 153 (543)
T ss_pred HHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---c
Confidence 999988 45543 2333 369999999988776 78889999999999 8899999999999999999999874 3
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCc-h-hhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 263 RLHRKAVSLVGDLAKCQLENMHKVEP-P-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 263 klr~KA~~LLs~L~~~~l~~~~~~~~-~-~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..+-.|+.++.+++... ..+.. + .-.-..++..+...+...+....-..+..|..++..
T Consensus 154 ~~~E~Al~lL~~Lls~~----~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRL----GQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred chHHHHHHHHHHHHHhc----chhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 45778999999998631 11110 0 001124445555555555444555556666666654
No 41
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.31 E-value=0.0016 Score=64.41 Aligned_cols=158 Identities=19% Similarity=0.158 Sum_probs=112.5
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhc------CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLEL------GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~------g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
++++++.......|+.+.+.+|...+.|.+. ....++++++.+++..+..+|.+.++.++...+....... .+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HH
Confidence 4688899999999999999999888888883 3688999999988888999999999999998776554422 23
Q ss_pred cHHHHHHHhcCC--ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhh------cC-CChhHHHHHHH
Q 016423 247 GDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT------AS-ADLDLQEKALA 317 (390)
Q Consensus 247 Gl~~L~~lL~s~--~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL------~~-~d~~v~EkAL~ 317 (390)
-++.+...+.+. +.+..++.-++.++..|+. .+..+..+.+.|.++.+..+| ++ .+.+++..++.
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~------~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR------SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT------SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC------cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 345555555532 1245567778899999984 677888999999999999999 23 37899999999
Q ss_pred HHHHHHhcChhHHHHHHhhCCc
Q 016423 318 AIKNLLQLRTTEALVLKDFCGL 339 (390)
Q Consensus 318 aL~~L~~~~~~~r~~~~~~~gL 339 (390)
|++.|.-.. .....+. .+++
T Consensus 221 ~lWlLSF~~-~~~~~~~-~~~~ 240 (312)
T PF03224_consen 221 CLWLLSFEP-EIAEELN-KKYL 240 (312)
T ss_dssp HHHHHTTSH-HHHHHHH-TTSH
T ss_pred HHHHHhcCH-HHHHHHh-ccch
Confidence 999988754 4555565 3443
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.27 E-value=0.0058 Score=63.76 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=103.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+-|.++++.+|..|..+|++++ +|..-+. .++.+.+++.++++-||.+|+.|+..+.+.+|...... -+
T Consensus 86 kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~----~~ 154 (526)
T PF01602_consen 86 KDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE----LI 154 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG----HH
T ss_pred HhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH----HH
Confidence 4578999999999999999996 4544433 57889999999889999999999999999988865441 26
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHH-hhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDL-AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L-~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+.+..+|.++ ++.++..|+.++..+ .. +.... -.-..+++.+..++...++-.+.++++++..+....+
T Consensus 155 ~~l~~lL~d~--~~~V~~~a~~~l~~i~~~------~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~ 224 (526)
T PF01602_consen 155 PKLKQLLSDK--DPSVVSAALSLLSEIKCN------DDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP 224 (526)
T ss_dssp HHHHHHTTHS--SHHHHHHHHHHHHHHHCT------HHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred HHHhhhccCC--cchhHHHHHHHHHHHccC------cchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence 7889999765 677899999999998 21 11101 1123455666666677888899999988888776543
No 43
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.25 E-value=0.0012 Score=52.00 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=66.1
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCC
Q 016423 206 LSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 206 l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~ 284 (390)
||.|++.| ++++..+|..|+++|+.+ . ....++.|..+++++ ++.+|..|++.|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~--------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---G--------DPEAIPALIELLKDE--DPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---T--------HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---C--------CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhC--------
Confidence 68899999 666788999999999932 1 113488999999775 7789999999998763
Q ss_pred CCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHH
Q 016423 285 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIK 320 (390)
Q Consensus 285 ~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~ 320 (390)
....++.|..++.++ +..++..|+.+|+
T Consensus 60 --------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 345788899988886 5566888887764
No 44
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.19 E-value=0.00066 Score=53.54 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
+++++.+|..|+++||..- ++ .++|.|+.++++++..+|..|++||+.+ .....++.|
T Consensus 10 ~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i-----------~~~~~~~~L 67 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRI-----------GDPEAIPAL 67 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCC-----------HHHHTHHHH
T ss_pred cCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------CCHHHHHHH
Confidence 7889999999999999441 11 3599999999988889999999999976 134578899
Q ss_pred HHHhcCCChhHHHHHHHHHHH
Q 016423 252 QDILGNSSFEIRLHRKAVSLV 272 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LL 272 (390)
..++.++. +..+|..|+..|
T Consensus 68 ~~~l~~~~-~~~vr~~a~~aL 87 (88)
T PF13646_consen 68 IKLLQDDD-DEVVREAAAEAL 87 (88)
T ss_dssp HHHHTC-S-SHHHHHHHHHHH
T ss_pred HHHHcCCC-cHHHHHHHHhhc
Confidence 99998763 455677776655
No 45
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.12 E-value=0.0087 Score=68.72 Aligned_cols=180 Identities=13% Similarity=0.103 Sum_probs=121.3
Q ss_pred cCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHc-C
Q 016423 170 QLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE-A 246 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~-g 246 (390)
.|.+..++|..-.+.||-++.=+ .......+.+.|-+-.|....-... .......|.||=||--|+..+...|+.- |
T Consensus 402 QL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDG 481 (2195)
T KOG2122|consen 402 QLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDG 481 (2195)
T ss_pred HHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccc
Confidence 34555556665566666666544 2234555555666666655543222 1222334555556666777777788765 4
Q ss_pred cHHHHHHHhcCC--ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 247 GDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 247 Gl~~L~~lL~s~--~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.+.+|+..|.-. ....++.-.+-.+|.|..+.. ...++.++.+.+++++..|..+|++....+...++.+|++|..
T Consensus 482 ALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I--At~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA 559 (2195)
T KOG2122|consen 482 ALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI--ATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 559 (2195)
T ss_pred hHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh--hccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc
Confidence 589999999744 234556666777777766532 2467889999999999999999999999999999999999998
Q ss_pred cChhHHHHHHhhCCcHHHHHHHHHHHH
Q 016423 325 LRTTEALVLKDFCGLDTALERLRQQLQ 351 (390)
Q Consensus 325 ~~~~~r~~~~~~~gL~~~L~~Lr~~l~ 351 (390)
-.+..++.+.+.+.+--+.+++++.++
T Consensus 560 R~p~DQq~LwD~gAv~mLrnLIhSKhk 586 (2195)
T KOG2122|consen 560 RSPEDQQMLWDDGAVPMLRNLIHSKHK 586 (2195)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhhhh
Confidence 777777777755555555555555544
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.11 E-value=0.019 Score=59.92 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=104.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+++.+++..+|..+--.+......+|..- ++ +++.|.+=+.++++.+|.-|+.+||++. .+.-.. .-.
T Consensus 49 ~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~l---~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~-----~l~ 116 (526)
T PF01602_consen 49 KLISSKDLELKRLGYLYLSLYLHEDPELL--IL---IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE-----PLI 116 (526)
T ss_dssp CTCSSSSHHHHHHHHHHHHHHTTTSHHHH--HH---HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH-----HHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHhhcchhHH--HH---HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh-----HHH
Confidence 67789999999999999999999998722 22 5677778888888889999999999986 233222 246
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
+.+..++.++ ++.+|++|+..+..+.. .+|+. +... +++.+..+|...|+.++..|+.++..+
T Consensus 117 ~~v~~ll~~~--~~~VRk~A~~~l~~i~~-----~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 117 PDVIKLLSDP--SPYVRKKAALALLKIYR-----KDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHSS--SHHHHHHHHHHHHHHHH-----HCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--chHHHHHHHHHHHHHhc-----cCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 7888888887 56899999999999985 23332 2233 899999999989999999999999998
No 47
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.002 Score=67.42 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=116.0
Q ss_pred cCCCCChHHH-HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 170 QLNHPDTDIR-KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 170 lL~s~~~~vR-~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.++--.+++. ++++-+|-.+...-...+--...+.+.++|+++|+.+...+..-++.+|++.+-.+.+-+..|...|-+
T Consensus 396 ~vn~~~d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iI 475 (743)
T COG5369 396 KVNRKQDDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSII 475 (743)
T ss_pred cCCccchHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHH
Confidence 4443334443 345566666666655566667777888999999988655556678999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+|+..+.++ |..+|.++.|.++++.. +-++..+=.+...--+..++++.+.++..+|+.++..|.++.+..
T Consensus 476 dvl~~~v~sK--DdaLqans~wvlrHlmy----ncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 476 DVLVNLVMSK--DDALQANSEWVLRHLMY----NCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred HHHHHHhhcc--hhhhhhcchhhhhhhhh----cCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence 9999999976 55799999999999995 223332223444555678889999999999999999999999854
No 48
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.06 E-value=0.0016 Score=44.00 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=34.8
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016423 194 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 232 (390)
Q Consensus 194 p~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLi 232 (390)
+..+..+.+.|++|+|++++.+++..++..|++||++++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346677889999999999999888899999999999986
No 49
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.93 E-value=0.0014 Score=45.08 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=35.2
Q ss_pred ccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 236 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 236 ~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
+.....+.+.||++.|+.+|.++ +..++..|+|+|++|+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSP--DPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCC--CHHHHHHHHHHHHHHh
Confidence 56678889999999999999976 7889999999999997
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.85 E-value=0.0097 Score=67.22 Aligned_cols=155 Identities=17% Similarity=0.093 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHhhccccccc---ccCCCCChHHHHHHHHHHHHH----------hhCChHHHHHHHhc---------
Q 016423 146 SLEDSQRALQELLILVEPIDNAN---GQLNHPDTDIRKISAWILGKA----------SQNNPLVQKQVLEL--------- 203 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnAn---~lL~s~~~~vR~~Aa~vLgta----------~QNNp~~Q~~~le~--------- 203 (390)
++.-|..|++.|..+-. .... ..|.++++.||..|+++|+.+ .-.|+.+|..+.+.
T Consensus 697 d~~VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 697 DPVVRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred CHHHHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccc
Confidence 34555566665544310 1111 566777778888887777753 22355666555442
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-------------------hHHHHHc---CcHHHHHHHhcCCChh
Q 016423 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-------------------QEMFYVE---AGDLMLQDILGNSSFE 261 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-------------------~~~f~~~---gGl~~L~~lL~s~~~d 261 (390)
..++.|+.++++++..+|..|+.+|+.+-.. +.. ..++... ..++.|..+|.++ +
T Consensus 775 ~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~--~ 851 (897)
T PRK13800 775 PAGDAVRALTGDPDPLVRAAALAALAELGCP-PDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDP--H 851 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-chhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCC--C
Confidence 2368899999888888999999999877221 110 0011111 1234444444443 3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHH
Q 016423 262 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 320 (390)
Q Consensus 262 ~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~ 320 (390)
..+|..|+..|..+- .+....+.|...++.+|.+|+..|..+|.
T Consensus 852 ~~VR~~A~~aL~~~~---------------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 852 LDVRKAAVLALTRWP---------------GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHHHhccC---------------CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 344445544444431 02245667788888889999999988875
No 51
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.80 E-value=0.094 Score=54.19 Aligned_cols=209 Identities=15% Similarity=0.062 Sum_probs=145.5
Q ss_pred HHHHHHHhhcccccccccCCCCC--hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 016423 153 ALQELLILVEPIDNANGQLNHPD--TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 230 (390)
Q Consensus 153 aLd~Le~lve~IDnAn~lL~s~~--~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSs 230 (390)
.++.+.++|++.. -+.+.. -.+-..+|..+.-+.-....-|..+-....+..++.-+.+++......+..||+|
T Consensus 266 l~e~~~~lv~~~k----~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigN 341 (604)
T KOG4500|consen 266 LLEDSIDLVRNMK----DFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGN 341 (604)
T ss_pred hHHHHHHHHHhcc----cccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 3455666666531 122222 2344567777766666655455544333388899999999888888889999999
Q ss_pred HhhCCccchHHHHHcCcHHHHHHHhcCC---ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC
Q 016423 231 LIRNNLAGQEMFYVEAGDLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 307 (390)
Q Consensus 231 LiR~~~~a~~~f~~~gGl~~L~~lL~s~---~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 307 (390)
+.|+... ...|++.+-+..|+.+|... +.+++++--++.+|++|+ .....+..+...|+.+.+...++..
T Consensus 342 faR~D~~-ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~------IPv~nka~~~~aGvteaIL~~lk~~ 414 (604)
T KOG4500|consen 342 FARRDDI-CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM------IPVSNKAHFAPAGVTEAILLQLKLA 414 (604)
T ss_pred hhccchH-HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc------ccCCchhhccccchHHHHHHHHHhc
Confidence 9998544 57788899999999998642 247888999999999998 3556677899999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcH---HHHHHHHHHHHHhhhhhhhhhhH-HHHHHHHHHHHHHHHHHhhh
Q 016423 308 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD---TALERLRQQLQEVMLEEDQRDYA-MDVEALRREVELIFFRKLDD 383 (390)
Q Consensus 308 d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~---~~L~~Lr~~l~el~~~e~~~ey~-~dl~~lr~e~~~~~~~~~~~ 383 (390)
.+.++-+-+.++.-+.... .+- .|.|. .++++| ...-+..||+ --.|..|-=.-+|-|.|+++
T Consensus 415 ~ppv~fkllgTlrM~~d~q-----e~~-a~eL~kn~~l~ekL-------v~Wsks~D~aGv~gESnRll~~lIkHs~~kd 481 (604)
T KOG4500|consen 415 SPPVTFKLLGTLRMIRDSQ-----EYI-ACELAKNPELFEKL-------VDWSKSPDFAGVAGESNRLLLGLIKHSKYKD 481 (604)
T ss_pred CCcchHHHHHHHHHHHhch-----HHH-HHHHhcCHHHHHHH-------HHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence 9999999999988887532 222 34442 233333 2333356666 34556676677777877765
Q ss_pred cc
Q 016423 384 SG 385 (390)
Q Consensus 384 ~~ 385 (390)
++
T Consensus 482 v~ 483 (604)
T KOG4500|consen 482 VI 483 (604)
T ss_pred hH
Confidence 54
No 52
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.094 Score=57.86 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=150.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhccccccc--------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHH
Q 016423 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNAN--------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 201 (390)
Q Consensus 136 ~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn--------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~l 201 (390)
.+-.|-+.+...|-...|--.|-+++|-+--.- +++.-..-+|-+++..+|-.+.+-+| .+++
T Consensus 215 ~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL 291 (1051)
T KOG0168|consen 215 VLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAIL 291 (1051)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHH
Confidence 333344455567777888888888888653321 67778889999999999999999988 4689
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhh
Q 016423 202 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 281 (390)
Q Consensus 202 e~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~ 281 (390)
+.|+|...+..|+--+..++++|+...+|+|..-++-.-.|+ ...+++|..+|+.. |.+....++-.+.+++..-
T Consensus 292 ~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v-~ealPlL~~lLs~~--D~k~ies~~ic~~ri~d~f-- 366 (1051)
T KOG0168|consen 292 QAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV-MEALPLLTPLLSYQ--DKKPIESVCICLTRIADGF-- 366 (1051)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH-HHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc--
Confidence 999999999999766678899999999999999544333333 46799999999976 6677888888888888532
Q ss_pred cCCCCCchhhhhcCchHHHHHhhcCCC----hhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHH
Q 016423 282 NMHKVEPPLFRDRFFLKSVVDLTASAD----LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE 352 (390)
Q Consensus 282 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d----~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~e 352 (390)
.+.++..+.+..+|++....++|.... ..+---..+.|..+.+..+.-+..+- ..++-.+|..+=+.|..
T Consensus 367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQGYSK 440 (1051)
T ss_pred ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHhccCc
Confidence 245677888999999999999997753 34555566666666664333222221 34455555555555544
No 53
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.70 E-value=0.067 Score=55.56 Aligned_cols=148 Identities=14% Similarity=-0.007 Sum_probs=113.2
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLEL-----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-----g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
....+++.....-.|..+.+.+|..-..|.+. ....+++.+|..++..+..+|.+.++.++...+.........-
T Consensus 64 ~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~ 143 (429)
T cd00256 64 QIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDY 143 (429)
T ss_pred ccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHH
Confidence 35678899999999999999999988888886 4678888999988778899999999999976554322211111
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHh
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~ 324 (390)
-++.|...|.++. +...+.=++.++..|+. .+..+..+.+.+.++.|+++|+.. +.+++-.++-|++.|.=
T Consensus 144 ~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~------~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF 216 (429)
T cd00256 144 YFNWLKEQLNNIT-NNDYVQTAARCLQMLLR------VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF 216 (429)
T ss_pred HHHHHHHHhhccC-CcchHHHHHHHHHHHhC------CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 2345666666542 34456667788888884 677888888888999999999763 67999999999999986
Q ss_pred cC
Q 016423 325 LR 326 (390)
Q Consensus 325 ~~ 326 (390)
..
T Consensus 217 ~~ 218 (429)
T cd00256 217 NP 218 (429)
T ss_pred cH
Confidence 53
No 54
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.69 E-value=0.0049 Score=52.97 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCc
Q 016423 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 205 (390)
Q Consensus 126 ~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~ 205 (390)
.+++.+++|..+++|..+ .++.+.+-||.=||..+...|..+..+-+.|+
T Consensus 38 ~~~~~~llk~L~~lL~~s------------------------------~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~ 87 (119)
T PF11698_consen 38 EENNFELLKKLIKLLDKS------------------------------DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGA 87 (119)
T ss_dssp SSGGGHHHHHHHHHH-SH------------------------------HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSH
T ss_pred HHcccHHHHHHHHHHccC------------------------------CCcceeehhhcchHHHHHHChhHHHHHHhcCh
Confidence 346889999999888432 24556677999999999999999999988999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~ 235 (390)
=..++.|+.+++++||..||.|+.-++.++
T Consensus 88 K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 88 KERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999987653
No 55
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.017 Score=64.65 Aligned_cols=172 Identities=17% Similarity=0.143 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhhcc----ccccc---------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC
Q 016423 149 DSQRALQELLILVEP----IDNAN---------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 149 ~~~~aLd~Le~lve~----IDnAn---------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s 215 (390)
-|..||.-|-.+++- +|.|- ++|.|+-.++|--=+.+=+.+..-.|.||..+++.++-...++.|..
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 455666666555543 33332 89999999999999999999999999999999999888888888877
Q ss_pred C-C--HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh
Q 016423 216 S-F--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 292 (390)
Q Consensus 216 ~-~--~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~ 292 (390)
. . ++-|.-|.+-|+.+++||+.+|++..+.|-+.+-...|.++. .+-+|.=.|-+|.-|-.. .+..+=.=.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d-----~~~Arw~G~ 639 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWED-----YDEARWSGR 639 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhh-----cchhhhccc
Confidence 3 2 356888999999999999999999998888888888888752 456777788888877741 222222224
Q ss_pred hcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 293 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 293 ~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
..+....|..+|+.+-++|+-.|+.||++++..+
T Consensus 640 r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 640 RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 6688889999999999999999999999999865
No 56
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.52 E-value=0.0063 Score=50.96 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
|.-.+-.|++++-.++..|+.+.+.||++++.....-+..++.+|-.|.|.|.+|+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e 59 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCE 59 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHh
Confidence 556788899999999999999999999999999987555688999999999999995
No 57
>PTZ00429 beta-adaptin; Provisional
Probab=96.48 E-value=0.051 Score=60.17 Aligned_cols=181 Identities=14% Similarity=0.068 Sum_probs=115.4
Q ss_pred ChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHH-----hhcccccc-cccCCCCChHHHHHHHHHHHHHhhCChHHHHH
Q 016423 128 SDAQLIQIAIDDLNNSTLS--LEDSQRALQELLI-----LVEPIDNA-NGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~~~s--~e~~~~aLd~Le~-----lve~IDnA-n~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~ 199 (390)
..++++--++..|.+.-.+ +--|--||-.|-. +++.+-.+ .++|.+.++-||..|+-++..+.+.+|. .
T Consensus 98 ~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---l 174 (746)
T PTZ00429 98 LQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---L 174 (746)
T ss_pred cChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---c
Confidence 3455555555555543332 3333334444322 22222222 1678899999999999999999999884 4
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 279 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~ 279 (390)
+.+.|.++.|.++|.+.+..|...|+.+|..+...+|.... ...+-+.-|...|.+- +.-.|...+-+|....
T Consensus 175 v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~--~EW~Qi~IL~lL~~y~--- 247 (746)
T PTZ00429 175 FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPEC--NEWGQLYILELLAAQR--- 247 (746)
T ss_pred ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcC--ChHHHHHHHHHHHhcC---
Confidence 55678899999999988888999999999999876654322 2233344455555442 4556666665554321
Q ss_pred hhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 280 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 280 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
|..... -..++..+...|++.+..|.-.|++++..+...
T Consensus 248 -----P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 248 -----PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred -----CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 211111 136777788888888888888888887777653
No 58
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.14 Score=57.94 Aligned_cols=207 Identities=18% Similarity=0.223 Sum_probs=131.1
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC--
Q 016423 115 MEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-- 192 (390)
Q Consensus 115 ~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-- 192 (390)
..|...+..+.-| |.++.++|-+.+++-..+.. ...+|.++. =.+.++.+|..|+-.+-..+.-
T Consensus 4 ~~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~~~~-~l~~L~~i~------------~~~~~p~~Rq~aaVl~Rkl~~~~w 69 (1075)
T KOG2171|consen 4 APLEQLLQQLLSP-DNEVRRQAEEALETLAKTEP-LLPALAHIL------------ATSADPQVRQLAAVLLRKLLTKHW 69 (1075)
T ss_pred hHHHHHHHHhcCC-CchHHHHHHHHHHHhhcccc-hHHHHHHHH------------hcCCChHHHHHHHHHHHHHHHHHh
Confidence 3455566655554 56778888888876443333 444555552 2578899999988776665432
Q ss_pred ---ChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHH
Q 016423 193 ---NPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 268 (390)
Q Consensus 193 ---Np~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA 268 (390)
+..+|+.+ -..|+..+.+++ ..+|.|-.-.|+.+.|+--+. . =.+.++.|.++.+++ ++.+|--|
T Consensus 70 ~~l~~e~~~si-----ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e--~--WPell~~L~q~~~S~--~~~~rE~a 138 (1075)
T KOG2171|consen 70 SRLSAEVQQSI-----KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE--K--WPELLQFLFQSTKSP--NPSLRESA 138 (1075)
T ss_pred hcCCHHHHHHH-----HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc--c--hHHHHHHHHHHhcCC--CcchhHHH
Confidence 44455543 345666666655 579999999999999996665 1 134567777777776 67789999
Q ss_pred HHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 269 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 269 ~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
.++|+.+.... .......+ ..+.+.+.+.+..++..++-.|++|+.+++...+.....+..+. .+|..+-+
T Consensus 139 l~il~s~~~~~----~~~~~~~~--~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~---~llP~~l~ 209 (1075)
T KOG2171|consen 139 LLILSSLPETF----GNTLQPHL--DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR---DLLPSLLN 209 (1075)
T ss_pred HHHHHhhhhhh----ccccchhH--HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH---HHhHHHHH
Confidence 99999998521 22222211 13445556666777667999999999999987632334443232 33444444
Q ss_pred HHHHhhh
Q 016423 349 QLQEVML 355 (390)
Q Consensus 349 ~l~el~~ 355 (390)
.+.+..+
T Consensus 210 vl~~~i~ 216 (1075)
T KOG2171|consen 210 VLQEVIQ 216 (1075)
T ss_pred HhHhhhh
Confidence 4555444
No 59
>PTZ00429 beta-adaptin; Provisional
Probab=96.40 E-value=0.22 Score=55.32 Aligned_cols=152 Identities=14% Similarity=0.157 Sum_probs=101.9
Q ss_pred HhHHHHHHHHHHcC-CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-cccccc-------ccCCCCChHHHHHH
Q 016423 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNAN-------GQLNHPDTDIRKIS 182 (390)
Q Consensus 112 ~r~~~L~eal~~~~-~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve-~IDnAn-------~lL~s~~~~vR~~A 182 (390)
+|++-+++++..+. |.+-..+.-+.+..+... +.+.|.-..--+..+-+ +-|.|- +-|.++++-||..|
T Consensus 48 ~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLA 125 (746)
T PTZ00429 48 RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALA 125 (746)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 36777777777663 444445555555555433 44544443322333333 233332 55778999999999
Q ss_pred HHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhH
Q 016423 183 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 262 (390)
Q Consensus 183 a~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~ 262 (390)
...++.+-- |. +++. .++.+.+.+.+.++-||.+|+.|+..+-+.+|.- +...+-++.|..+|.++ ++
T Consensus 126 LRtLs~Ir~--~~----i~e~-l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel---v~~~~~~~~L~~LL~D~--dp 193 (746)
T PTZ00429 126 VRTMMCIRV--SS----VLEY-TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL---FYQQDFKKDLVELLNDN--NP 193 (746)
T ss_pred HHHHHcCCc--HH----HHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc---ccccchHHHHHHHhcCC--Cc
Confidence 999998732 22 2222 4667788888888889999999999999887753 33344567788888876 67
Q ss_pred HHHHHHHHHHHHHhh
Q 016423 263 RLHRKAVSLVGDLAK 277 (390)
Q Consensus 263 klr~KA~~LLs~L~~ 277 (390)
-+...|+.+|..+..
T Consensus 194 ~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 194 VVASNAAAIVCEVND 208 (746)
T ss_pred cHHHHHHHHHHHHHH
Confidence 789999999999974
No 60
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.58 Score=52.56 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=83.5
Q ss_pred HHHHHHHHHHh------cCCCCHHHHHHHHHHHHHhhccccc-c---c-----------ccCCCCChHHHHHHHHHHHHH
Q 016423 131 QLIQIAIDDLN------NSTLSLEDSQRALQELLILVEPIDN-A---N-----------GQLNHPDTDIRKISAWILGKA 189 (390)
Q Consensus 131 ~~Mk~~l~~l~------~~~~s~e~~~~aLd~Le~lve~IDn-A---n-----------~lL~s~~~~vR~~Aa~vLgta 189 (390)
..|.=++.+|+ .+....-.+..||-.+--+++-+.. + + ..++|+.--+|++|||+++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 45566677776 3334456777888877777765543 2 2 456788888999999999999
Q ss_pred hhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh
Q 016423 190 SQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 255 (390)
Q Consensus 190 ~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL 255 (390)
+.-+=+-+..+.+ ++....+.+.++ .-+|++-|..||.++|++++.+-..+. ..-.+++..+|
T Consensus 490 ~~~df~d~~~l~~--ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~-~hvp~~mq~lL 553 (1010)
T KOG1991|consen 490 SSIDFKDPNNLSE--ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS-AHVPPIMQELL 553 (1010)
T ss_pred HhccCCChHHHHH--HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh-hhhhHHHHHHH
Confidence 8555444554544 567777777744 458999999999999999887744443 33334444444
No 61
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.25 E-value=0.11 Score=55.58 Aligned_cols=156 Identities=16% Similarity=0.200 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 209 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~L 209 (390)
++.+.+..++|.+.. +..+...++..+...+ ..+...+..|+..|..-...=|..|+. +|..+
T Consensus 2 ie~lY~~~~~L~~a~-d~~~~~~~y~~il~~~-----------kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~ 64 (556)
T PF05918_consen 2 IEKLYENYEILADAK-DKSQHEEDYKEILDGV-----------KGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQ 64 (556)
T ss_dssp HHHHHHHHHHHHHTG-GGGGGHHHHHHHHHGG-----------GS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHH
T ss_pred HHHHHHHHhHhhcCC-CcccCHHHHHHHHHHc-----------cCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHH
Confidence 355666667776642 2223333444443322 257889999999999999999999998 56679
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCC-hhHHHHHHHHHHHHHHhhhhhhcCCCCCc
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS-FEIRLHRKAVSLVGDLAKCQLENMHKVEP 288 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~-~d~klr~KA~~LLs~L~~~~l~~~~~~~~ 288 (390)
+.|..+++..+|..|+-+|..+|++++.-...+ ..+|.++|+++. ....+..++ |..|+. .+
T Consensus 65 ~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~s---L~~ll~-----~d---- 127 (556)
T PF05918_consen 65 LDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNS---LMSLLK-----QD---- 127 (556)
T ss_dssp HHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHH---HHHHHH-----H-----
T ss_pred HHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHH---HHHHHh-----cC----
Confidence 999999999999999999999999988776665 368999999763 222233333 333332 11
Q ss_pred hhhhhcCchHHHHHhhc---CCChhHHHHHHHHHHHHH
Q 016423 289 PLFRDRFFLKSVVDLTA---SADLDLQEKALAAIKNLL 323 (390)
Q Consensus 289 ~~l~~~g~v~~Lv~lL~---~~d~~v~EkAL~aL~~L~ 323 (390)
..+.+..+...+. +.|..++|+++..|..=+
T Consensus 128 ----~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 128 ----PKGTLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp ----HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred ----cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 1233334433333 446678888877665433
No 62
>PF05536 Neurochondrin: Neurochondrin
Probab=96.24 E-value=0.18 Score=54.13 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=116.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHH---HHHHhcCcHHHHHHhhcCC-------CHHHHHHHHHHHHHHhhCCccc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQ---KQVLELGALSKLMKMVKSS-------FVEEAVKALYTVSSLIRNNLAG 238 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q---~~~le~g~l~~Ll~LL~s~-------~~~vr~kAL~ALSsLiR~~~~a 238 (390)
.+|++.+++=|..+.-.+..++.+++..+ ..+.+.=+.+-|-+||.+. ....+.=|+.-|+++++. |..
T Consensus 12 ~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~-~~~ 90 (543)
T PF05536_consen 12 SLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD-PEL 90 (543)
T ss_pred HHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC-hhh
Confidence 57888888899999999999999987433 3477775578888888873 234566788889999984 332
Q ss_pred hHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHH
Q 016423 239 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 318 (390)
Q Consensus 239 ~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~a 318 (390)
...-.-.+=++.|.+++.+.. +..+...+..+|..+++ .++-...+.+.|.++.|++.+.+ .....|.|+.+
T Consensus 91 a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias------~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 91 ASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIAS------SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred hcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHc------CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 222223467999999998763 34688899999999984 78888999999999999999988 55789999999
Q ss_pred HHHHHhcC
Q 016423 319 IKNLLQLR 326 (390)
Q Consensus 319 L~~L~~~~ 326 (390)
+..++...
T Consensus 163 L~~Lls~~ 170 (543)
T PF05536_consen 163 LLNLLSRL 170 (543)
T ss_pred HHHHHHhc
Confidence 99988753
No 63
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.08 Score=58.00 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=146.8
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc---c------ccC--CCCChHHHHHHHHHHHHHhhCC--
Q 016423 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA---N------GQL--NHPDTDIRKISAWILGKASQNN-- 193 (390)
Q Consensus 127 ~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnA---n------~lL--~s~~~~vR~~Aa~vLgta~QNN-- 193 (390)
++.++.+....+-+.++. -.+||-.|.--|--+-...-.+ . +.| ...++++-..|...+..+..+.
T Consensus 18 ~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred ccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 456667777777776643 3556655544332222222111 1 233 2478888899999998888775
Q ss_pred ------hH--------HHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-hHHHHH-cCcHHHHHHHhc
Q 016423 194 ------PL--------VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYV-EAGDLMLQDILG 256 (390)
Q Consensus 194 ------p~--------~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-~~~f~~-~gGl~~L~~lL~ 256 (390)
+. .-+.|++. +-+..|+..+...+-.||..++--||+++++-|+- ++++.. .-|++-|+.+|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 22 23556655 67888889998877789999999999999997765 444443 469999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC----ChhHHHHHHHHHHHHHhcChhHHHH
Q 016423 257 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA----DLDLQEKALAAIKNLLQLRTTEALV 332 (390)
Q Consensus 257 s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~----d~~v~EkAL~aL~~L~~~~~~~r~~ 332 (390)
+.. ..+|-.++.+|..|+ +.++...+.+.=.++...|.+++... .--|.+-+|..|.+|+..+..-++.
T Consensus 177 Dsr--E~IRNe~iLlL~eL~-----k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~ 249 (970)
T KOG0946|consen 177 DSR--EPIRNEAILLLSELV-----KDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNF 249 (970)
T ss_pred hhh--hhhchhHHHHHHHHH-----ccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhH
Confidence 863 347888999999998 46777777777789999999999653 3478999999999999988777888
Q ss_pred HHhhCCc
Q 016423 333 LKDFCGL 339 (390)
Q Consensus 333 ~~~~~gL 339 (390)
|+ .++-
T Consensus 250 Fr-E~~~ 255 (970)
T KOG0946|consen 250 FR-EGSY 255 (970)
T ss_pred Hh-cccc
Confidence 87 5553
No 64
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.20 E-value=0.036 Score=49.03 Aligned_cols=118 Identities=9% Similarity=0.045 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 254 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~l 254 (390)
+.+-+++..--|++.+- .|..-....+.+++..++.-|...+..+.+.++.+|+|+|-+ +.+.+...+++|++.++.+
T Consensus 30 ~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g~plii~~ 107 (173)
T KOG4646|consen 30 NIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFIREALGLPLIIFV 107 (173)
T ss_pred cHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHHHHhcCCceEEee
Confidence 44444444444445433 466777888899999999999998888899999999999977 5566777899999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHH
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 301 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 301 (390)
++++ ...+.--|+.++.+|. ......++.+....+++.+-
T Consensus 108 lssp--~e~tv~sa~~~l~~l~-----~~~Rt~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 108 LSSP--PEITVHSAALFLQLLE-----FGERTERDELLSPAVVRTVQ 147 (173)
T ss_pred cCCC--hHHHHHHHHHHHHHhc-----CcccchhHHhccHHHHHHHH
Confidence 9987 2223444555555555 23444555555444444433
No 65
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=96.16 E-value=0.012 Score=67.72 Aligned_cols=137 Identities=19% Similarity=0.179 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCC--HHH--HH---HHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 181 ISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSF--VEE--AV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 181 ~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~--~~v--r~---kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
.|+|-|+.=|..| +..|... |+|..|+.+|.-+. ..+ .. --|.-+|++|-.+.+-.+....++-+..|.
T Consensus 460 SALWNLSAHcteN---KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LL 536 (2195)
T KOG2122|consen 460 SALWNLSAHCTEN---KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLL 536 (2195)
T ss_pred HHHhhhhhccccc---chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHH
Confidence 3566555544444 3444443 89999999997552 222 22 457788999999888777888999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+.|++. +..+..++|..|+||.. -+++..+.+.+.|.+..|-+++++.+..+-+-+..+|.+|+...+
T Consensus 537 Q~LKS~--SLTiVSNaCGTLWNLSA-----R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 537 QHLKSH--SLTIVSNACGTLWNLSA-----RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHhhhc--ceEEeecchhhhhhhhc-----CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 999987 56789999999999995 578889999999999999999999999999999999999998753
No 66
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.12 E-value=0.014 Score=50.22 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=59.0
Q ss_pred CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 204 GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 204 g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..+..|+++|.++. +.+..-|++=|+-++|++|.+.......||-..++.++.++ +..+|..|+.++.-|+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE--DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 36889999996544 44566799999999999999988888899999999999986 77899999999998874
No 67
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.18 Score=50.56 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhhccccccc-------ccCCCCChHHHHHHHHHHHHHhhCCh--HHHHH--HHhcCcHHHHHHhhcCCCH
Q 016423 150 SQRALQELLILVEPIDNAN-------GQLNHPDTDIRKISAWILGKASQNNP--LVQKQ--VLELGALSKLMKMVKSSFV 218 (390)
Q Consensus 150 ~~~aLd~Le~lve~IDnAn-------~lL~s~~~~vR~~Aa~vLgta~QNNp--~~Q~~--~le~g~l~~Ll~LL~s~~~ 218 (390)
.+..|+.|-.--+...-|. .-|.+++..|+..||.-||.+..|.. .+-.. +...|.++.++..+..++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 4455565555444444443 45788999999999999999998865 23332 4477899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHH-hcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCch
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI-LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 297 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~l-L~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v 297 (390)
+|...|+-.|+.+.+- |.+.++....+-...+... |.-.+.++ .|.+...+|-.+.+ ..+.........|++
T Consensus 143 eVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndi-aRvRVleLIieifS-----iSpesaneckkSGLl 215 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDI-ARVRVLELIIEIFS-----ISPESANECKKSGLL 215 (524)
T ss_pred HHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhH-HHHHHHHHHHHHHh-----cCHHHHhHhhhhhHH
Confidence 9999999999998764 7777777766544333222 21121233 77888888888875 455556667778888
Q ss_pred HHHHHhhcC-CChhHHHHHHHHHHHHHh
Q 016423 298 KSVVDLTAS-ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 298 ~~Lv~lL~~-~d~~v~EkAL~aL~~L~~ 324 (390)
..|..-|+. .|.-++-.++..+..|+.
T Consensus 216 dlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 216 DLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 888777776 477777778777777775
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.96 E-value=0.01 Score=43.13 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 275 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L 275 (390)
.+|..|+++|+.+..+.+..... +....++.|..+|.++ +..+|..|++.|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 58999999999988887776665 4578899999999877 447899999999865
No 69
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.96 E-value=0.063 Score=57.60 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=92.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-hHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-~~~f~~~gG 247 (390)
++|..|+..|...+..+|.++|-.-...|..|+..|++..|+.++.+.+..+|.+++|+|-.+.-+...- +.++...=|
T Consensus 426 qll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~ 505 (678)
T KOG1293|consen 426 QLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIP 505 (678)
T ss_pred HHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhh
Confidence 6777788889999999999999998889999999999999999999988889999999999998886554 445555557
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
-..|..+..++ +..+|.-+..+++||+-
T Consensus 506 a~~i~~l~nd~--d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 506 ANLILDLINDP--DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence 77777777776 78899999999999984
No 70
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.91 E-value=0.62 Score=46.39 Aligned_cols=197 Identities=17% Similarity=0.110 Sum_probs=106.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QN---Np~~Q~~~le~g~l~~Ll~LL~s~~--~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
+.++....+=+..|+.+++-++=. .....+ +++ ...|.|.+++.+.+ ..+|..+++||+-++--.........
T Consensus 93 k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e-i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~ 170 (309)
T PF05004_consen 93 KSLKKGKSEEQALAARALALLALTLGAGEDSEE-IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETE 170 (309)
T ss_pred HHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH-HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHH
Confidence 456655556667788888876433 344444 343 36888999888655 35677787777765432111111111
Q ss_pred -HcCcHH--HHHHHhcCCC--------hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHH
Q 016423 244 -VEAGDL--MLQDILGNSS--------FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 312 (390)
Q Consensus 244 -~~gGl~--~L~~lL~s~~--------~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~ 312 (390)
...-+. ....+.+.+. ++..+..-|+...+-|++. .++...... -...++.++.+|.++|.+||
T Consensus 171 ~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~----~~~~~~~~~-~~~~~~~l~~lL~s~d~~VR 245 (309)
T PF05004_consen 171 ELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTT----LPDSKLEDL-LEEALPALSELLDSDDVDVR 245 (309)
T ss_pred HHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhc----CCHHHHHHH-HHHHHHHHHHHhcCCCHHHH
Confidence 001111 1111122211 1345777777777766652 122111221 24568999999999999999
Q ss_pred HHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 016423 313 EKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKL 381 (390)
Q Consensus 313 EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey~~dl~~lr~e~~~~~~~~~ 381 (390)
-.|-.+|.-|.....++...+ ..+....|-.++++++.+- .-|... .=|++-...|++-+
T Consensus 246 iAAGEaiAll~E~~~~~~~~~-----~~~~~~~l~~~l~~La~dS--~K~~sK--kdrk~qRs~Frdil 305 (309)
T PF05004_consen 246 IAAGEAIALLYELARDHEEDF-----LYEDMEELLEQLRELATDS--SKSRSK--KDRKQQRSSFRDIL 305 (309)
T ss_pred HHHHHHHHHHHHHhhcccccc-----cccCHHHHHHHHHHHHHhc--cCccch--hHHHHHHHHHHHHH
Confidence 999999998887543222112 2223344555556665432 222222 13555666666654
No 71
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.91 E-value=0.019 Score=38.51 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=33.4
Q ss_pred cchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 237 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 237 ~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
.....+.+.||++.|+.+++++ +.+++..|+++|++|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~--~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE--DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHc
Confidence 3567788999999999999965 6789999999999986
No 72
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.38 Score=52.66 Aligned_cols=195 Identities=14% Similarity=0.114 Sum_probs=123.2
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchH-HHHHcCcH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE-MFYVEAGD 248 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~-~f~~~gGl 248 (390)
-+++++=.-|..|+-+.|.+--.=...+-.-+..+++|.++.+..+++.-++..+-|+++-++.+.|.+.. ......-+
T Consensus 372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l 451 (859)
T KOG1241|consen 372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL 451 (859)
T ss_pred hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence 46778888899999999999777555666666678999999999966667788899999999988775433 33334556
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhc---CchHHHHHhhcC---CChhHHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR---FFLKSVVDLTAS---ADLDLQEKALAAIKNL 322 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~---g~v~~Lv~lL~~---~d~~v~EkAL~aL~~L 322 (390)
++++.-|.+ .+++-.++||.+.+|+...-+.....-....... .++..|++.-.. .+..+|..|-.||..|
T Consensus 452 ~~l~~gL~D---ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 452 SALLEGLND---EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred HHHHHHhhh---CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 777777776 5889999999999999532111100000001111 233333333333 3578999999999999
Q ss_pred HhcChhHHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 016423 323 LQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEA 368 (390)
Q Consensus 323 ~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey~~dl~~ 368 (390)
+...++..-... ..-..-.+.+|.+-+.+-....++++-..||+.
T Consensus 529 Ik~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs 573 (859)
T KOG1241|consen 529 IKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQS 573 (859)
T ss_pred HHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHH
Confidence 987655222221 111234555565555522223334555555443
No 73
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.85 E-value=0.14 Score=46.30 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=94.5
Q ss_pred HHHHhcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHH
Q 016423 198 KQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 271 (390)
Q Consensus 198 ~~~le~g~l~~Ll~LL~s~~~------~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~L 271 (390)
..|++.||++.|++++.+... +.-..+|.|+..|.-|.-- ........-+.-+...+..+..+..+...|+..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~v-sWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIV-SWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcC-chhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 458999999999999987652 4456778888887776432 233334444556666666554477889999999
Q ss_pred HHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 272 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 272 Ls~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
|-+++. ..+.....+.+.=-++.|+.+|..++.++|-+|+..+-+|..-.++
T Consensus 84 LEs~Vl-----~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 84 LESIVL-----NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHh-----CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999994 4556677777788899999999999999999999999998875543
No 74
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.82 E-value=0.43 Score=48.79 Aligned_cols=175 Identities=17% Similarity=0.132 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHHHHHhhccccccc-----------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH
Q 016423 143 STLSLEDSQRALQELLILVEPIDNAN-----------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 211 (390)
Q Consensus 143 ~~~s~e~~~~aLd~Le~lve~IDnAn-----------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~ 211 (390)
......||+.||.=...+++--+..+ .+..++++.+|..|...|+.++--|| +.+.++||+..|++
T Consensus 78 ~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~ 154 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLR 154 (371)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHH
Confidence 34457899999988888876544443 45567899999999999999999999 55888999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCC-----ChhH--HHHHHHHHHHHHHhhhhhhcCC
Q 016423 212 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----SFEI--RLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 212 LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~-----~~d~--klr~KA~~LLs~L~~~~l~~~~ 284 (390)
.+-+.+-+.....+.++=-++ ++|.....+...-.++.+..-+.+. +++. ..-..+..+|..++.+ =
T Consensus 155 ~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-----W 228 (371)
T PF14664_consen 155 ALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-----W 228 (371)
T ss_pred HHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-----C
Confidence 998755455556666666555 4466555444334456666555433 1122 2445677888888752 2
Q ss_pred CCCchhhh-hcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 285 KVEPPLFR-DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 285 ~~~~~~l~-~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+...-.-. +...++.++..|..++.++++..+..+..+....
T Consensus 229 ~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 229 PGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred CceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 22221111 2257889999999999999999999999998764
No 75
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=95.80 E-value=0.23 Score=43.13 Aligned_cols=108 Identities=18% Similarity=0.098 Sum_probs=80.4
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChH-
Q 016423 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPL- 195 (390)
Q Consensus 117 L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~- 195 (390)
+.+|-.......|.+.+.+..+.++.......+-..+|-. -|.++++.++..|..+|-.++.|...
T Consensus 5 I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~k-------------rl~~~n~~vql~AL~lLd~~vkNcg~~ 71 (133)
T cd03561 5 IERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRK-------------KIKYGNPHVQLLALTLLELLVKNCGKP 71 (133)
T ss_pred HHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHhCChH
Confidence 3444443334567888888888888776565555554433 36788999999999999999999744
Q ss_pred HHHHHHhcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhhCCcc
Q 016423 196 VQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLA 237 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~---~~~vr~kAL~ALSsLiR~~~~ 237 (390)
++..+.....+..|++++... +..|+.|++..|-+.-..++.
T Consensus 72 f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 72 FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 888888878888899999863 467999998888777655543
No 76
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.4 Score=52.54 Aligned_cols=178 Identities=10% Similarity=0.006 Sum_probs=114.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
+-|.++.|.....|+.|||.++-=.-..-.+ -+.|+.|+.....+.. .++..++-||+-+|.+-.|..-.-..+..
T Consensus 97 ~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~w---p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~i 173 (859)
T KOG1241|consen 97 RTLGSPEPRRPSSAAQCVAAIACIELPQNQW---PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDI 173 (859)
T ss_pred HHcCCCCCCccchHHHHHHHHHHhhCchhhC---HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHH
Confidence 5678899999999999999886431111000 1345666666665554 48899999999999996665333333445
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+..++.-.....++..+|.-|..+|.+=+.-. ...+......+-+++.+++.-+++|..++-+|+.||..|++.-=
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~----~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFT----KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHH----HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 56666666544456778888888888765421 11222223334555666778888999999999999999998532
Q ss_pred hHHHHHHhhCC-cHHHHHHHHHHHHHhh
Q 016423 328 TEALVLKDFCG-LDTALERLRQQLQEVM 354 (390)
Q Consensus 328 ~~r~~~~~~~g-L~~~L~~Lr~~l~el~ 354 (390)
+.-..+- ... +.-++..++++.++.+
T Consensus 250 ~~m~~yM-~~alfaitl~amks~~deVa 276 (859)
T KOG1241|consen 250 EFMEPYM-EQALFAITLAAMKSDNDEVA 276 (859)
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCcHHHH
Confidence 1111111 111 3457788888888755
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.74 E-value=0.043 Score=59.71 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=97.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHH---HHHHHHHHHh---hCCccchHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV---KALYTVSSLI---RNNLAGQEMF 242 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~---kAL~ALSsLi---R~~~~a~~~f 242 (390)
..|+++++.+|.+|+..+|.++---..|++.-+=.-.--.|...|..+.+++.- +|++||-|.+ .-+||.
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi---- 881 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI---- 881 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh----
Confidence 468899999999999999998654333443221111113466777777777644 5566665554 223443
Q ss_pred HHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 243 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 243 ~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
.+-++-|..+|++. ..|++.+..-|+..++. ..++....=.=+-+|=-|+++|++.+..++..|.++++-+
T Consensus 882 --~dllPrltPILknr--heKVqen~IdLvg~Iad-----rgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 882 --KDLLPRLTPILKNR--HEKVQENCIDLVGTIAD-----RGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred --hhhcccchHhhhhh--HHHHHHHHHHHHHHHHh-----cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34568888999987 68899999999999995 3444333222235666788888888888888888888777
Q ss_pred Hh
Q 016423 323 LQ 324 (390)
Q Consensus 323 ~~ 324 (390)
+.
T Consensus 953 ak 954 (1172)
T KOG0213|consen 953 AK 954 (1172)
T ss_pred HH
Confidence 65
No 78
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.71 E-value=0.16 Score=57.24 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=92.0
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 253 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~ 253 (390)
+++=|..||.+|+.++.|-+.-|+..++.+.|..-+..++++. +-+|--++-+|+-|=.+|+.++..-...+..+.|..
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 4689999999999999999999999999999999999999864 346778899999999999999988888999999999
Q ss_pred HhcCCChhHHHHHHHHHHHHHHhh
Q 016423 254 ILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 254 lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+|.++ .+.+|.-|+|+|..++.
T Consensus 650 ~LsD~--vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 650 LLSDP--VPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HhcCc--cHHHHHHHHHHHHHHhc
Confidence 99987 67899999999999996
No 79
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.87 Score=47.92 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=46.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVS 229 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-~vr~kAL~ALS 229 (390)
++....+++++..+...+-+..-. ...+...+..|.+|.|..++.+++- ....+.+|-+|
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S 412 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS 412 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence 566789999999999999999544 5688889999999999999998753 23444444444
No 80
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.38 E-value=0.37 Score=41.98 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-+......|.+.+.+..+.++.....+.+-..+|- +-|.++++.++..|..++.++++| .+
T Consensus 4 ~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~-------------krl~~~n~~v~l~AL~lLe~~vkNcg~ 70 (133)
T smart00288 4 LIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLK-------------KRLNNKNPHVALLALTLLDACVKNCGS 70 (133)
T ss_pred HHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHH-------------HHHcCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3444444434456777888888888776555555444432 235789999999999999999999 57
Q ss_pred HHHHHHHhcCcHHHHHHhhcCCCH-H-HHHHHHHHHHHHhhCC
Q 016423 195 LVQKQVLELGALSKLMKMVKSSFV-E-EAVKALYTVSSLIRNN 235 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~~~-~-vr~kAL~ALSsLiR~~ 235 (390)
.++..+...+.+..|.++++.... + |+.|++..+.+-...+
T Consensus 71 ~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 71 KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 788889889999999999987642 3 8999988888776554
No 81
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.37 E-value=0.32 Score=43.10 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=79.3
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-hHH
Q 016423 118 KELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-PLV 196 (390)
Q Consensus 118 ~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p~~ 196 (390)
.+|=.......|...+-+..+.++.....+.+-..++-. -|.+.++.++..|..+|-++++|. +.+
T Consensus 6 ekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~K-------------Rl~~~n~~v~l~AL~LLe~~vkNCG~~f 72 (144)
T cd03568 6 EKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMK-------------RLNHKDPNVQLRALTLLDACAENCGKRF 72 (144)
T ss_pred HHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 333333333457778888888888766556555544432 247789999999999999999995 468
Q ss_pred HHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCc
Q 016423 197 QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~ 236 (390)
+..+.....+..|+++++. .+..|+.|.+.-|-.....++
T Consensus 73 h~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 73 HQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 8888888999999999988 567899999888887766554
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.36 E-value=0.13 Score=53.16 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=85.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
..|.++++.||..++..||.+ + ..++.+.|+.+|+++++.+|..++.+++. |+. .-.
T Consensus 93 ~~L~d~~~~vr~aaa~ALg~i-~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~--r~~----------~~~ 149 (410)
T TIGR02270 93 AVLQAGPEGLCAGIQAALGWL-G----------GRQAEPWLEPLLAASEPPGRAIGLAALGA--HRH----------DPG 149 (410)
T ss_pred HHhcCCCHHHHHHHHHHHhcC-C----------chHHHHHHHHHhcCCChHHHHHHHHHHHh--hcc----------ChH
Confidence 567778888999999999965 1 12467889999998888888877766655 221 123
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
+.+..+|++. +..++..|+..|.+|-. ...++.|...+.+.|..|+..|+.++..+
T Consensus 150 ~~L~~~L~d~--d~~Vra~A~raLG~l~~----------------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHE--DALVRAAALRALGELPR----------------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHhhcc----------------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 4678888865 78899999999998852 35566677889999999999999888665
No 83
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.34 E-value=0.29 Score=52.66 Aligned_cols=141 Identities=18% Similarity=0.132 Sum_probs=92.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHH--HHHHHhcCcHHHHHHhhcCCCHHHHH---HHHHHHHHHhhCC---ccchH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLV--QKQVLELGALSKLMKMVKSSFVEEAV---KALYTVSSLIRNN---LAGQE 240 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~--Q~~~le~g~l~~Ll~LL~s~~~~vr~---kAL~ALSsLiR~~---~~a~~ 240 (390)
.+|+|+.+.+|.+|+..+|.++.-=..| -..+.++| ..|...|..+.+++.- +|+++|-|..|-. ||.
T Consensus 611 ~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi-- 686 (975)
T COG5181 611 KLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPI-- 686 (975)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCch--
Confidence 6789999999999999999884321101 11122222 2244555666666644 5666665554432 222
Q ss_pred HHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHH
Q 016423 241 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 320 (390)
Q Consensus 241 ~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~ 320 (390)
.|-++.|..+|.+. ..|++.++..++.-++. ..++....=.=+-+|=-|+++|.+.+..++..|..+++
T Consensus 687 ----~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~-----~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 687 ----SGILPSLTPILRNK--HQKVVANTIALVGTICM-----NSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred ----hhccccccHhhhhh--hHHHhhhHHHHHHHHHh-----cCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 45678899999987 67899999999999985 33443322222356667888888888888888887777
Q ss_pred HHHh
Q 016423 321 NLLQ 324 (390)
Q Consensus 321 ~L~~ 324 (390)
.+..
T Consensus 756 ~Is~ 759 (975)
T COG5181 756 CISR 759 (975)
T ss_pred hHHh
Confidence 6664
No 84
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.26 E-value=0.29 Score=43.19 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-h
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-P 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p 194 (390)
++.+|-+......|...+-+..+.++.....+.+-..++. +-|++.++.+.-.|..+|-++++|. +
T Consensus 5 ~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~-------------krl~~~n~~v~l~AL~LLe~~vkNCG~ 71 (139)
T cd03567 5 WLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLA-------------HKIQSPQEKEALQALTVLEACMKNCGE 71 (139)
T ss_pred HHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHH-------------HHHcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 3444444444556778888888888765544443333322 2357899999999999999999994 7
Q ss_pred HHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhCC
Q 016423 195 LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s------~~~~vr~kAL~ALSsLiR~~ 235 (390)
.++..+...+.+..|+++++. .+..|+.|.+.-|=.--..+
T Consensus 72 ~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 72 RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999963 34678888887766655444
No 85
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.14 E-value=0.45 Score=42.03 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=77.3
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-ChHH
Q 016423 118 KELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NPLV 196 (390)
Q Consensus 118 ~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np~~ 196 (390)
.+|-.......|...+.+..+.++.....+.+-..++- +-|.+.++.++..|..+|-++++| .+.+
T Consensus 10 ~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~-------------krl~~~n~~vql~AL~LLe~~vkNCG~~f 76 (142)
T cd03569 10 EKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALK-------------KRLLSKNPNVQLYALLLLESCVKNCGTHF 76 (142)
T ss_pred HHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHH-------------HHHcCCChHHHHHHHHHHHHHHHHCCHHH
Confidence 33333333445677788888888765544444443332 235789999999999999999999 5778
Q ss_pred HHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCc
Q 016423 197 QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~ 236 (390)
+..+...+.+..|++++.. .+..|+.|++..|-+-...++
T Consensus 77 h~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 77 HDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 8889999999999999975 346789999888877655543
No 86
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.06 E-value=0.1 Score=47.06 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=78.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-hHHHHHcCcHHHHHHHhcCC-------ChhHHHHHHHHHHHHHHhh
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGNS-------SFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-~~~f~~~gGl~~L~~lL~s~-------~~d~klr~KA~~LLs~L~~ 277 (390)
...+++.+.+.+. ..+.+..|.-.+|.++.. ...|+..||+..|..+|..- ..+..+...++..|..|+.
T Consensus 68 p~~~i~~L~~~~~--~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPS--TSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT----HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCc--cHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 4456666665432 228888899999997765 78999999999999998521 1345678888999999883
Q ss_pred hhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 278 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 278 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
........+...+++..++..|.+++..++..|+..|..+.
T Consensus 146 -----~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 -----TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp -----SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 22223344556899999999999999999999998887653
No 87
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.01 E-value=0.28 Score=44.59 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 254 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~l 254 (390)
++.||..+.-++|.++...|..=+. .+|.+...|.++++.||..|+..|+-|+.+..--.+ ...+..+..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 5789999999999999887754433 589999999999999999999999999876322111 1122566677
Q ss_pred hcCCChhHHHHHHHHHHHHHHhh
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+.++ ++.++.-|..++..+..
T Consensus 72 l~D~--~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 72 LVDE--NPEIRSLARSFFSELLK 92 (178)
T ss_pred HcCC--CHHHHHHHHHHHHHHHH
Confidence 7765 67799999999999985
No 88
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.82 E-value=0.66 Score=47.43 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=111.4
Q ss_pred HHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHH
Q 016423 184 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR 263 (390)
Q Consensus 184 ~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~k 263 (390)
.-+-.+.+.+|..+....-.-.++.+..++-+++.++|..+...+-=++.+ +.....+...+.-..++..|..++...-
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 345566678887777766555667777655555578888888888777766 5567888888988888888875432222
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHH
Q 016423 264 LHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL 343 (390)
Q Consensus 264 lr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L 343 (390)
=|..|..+++.++.-. .++. ....|+++.++.+..+.+..++..++.+|..|+-. +++.+...+|+..++
T Consensus 84 ER~QALkliR~~l~~~---~~~~----~~~~~vvralvaiae~~~D~lr~~cletL~El~l~---~P~lv~~~gG~~~L~ 153 (371)
T PF14664_consen 84 EREQALKLIRAFLEIK---KGPK----EIPRGVVRALVAIAEHEDDRLRRICLETLCELALL---NPELVAECGGIRVLL 153 (371)
T ss_pred HHHHHHHHHHHHHHhc---CCcc----cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh---CHHHHHHcCCHHHHH
Confidence 3678999999998510 1111 23779999999999999999999999999999875 345555467777666
Q ss_pred HHHHH
Q 016423 344 ERLRQ 348 (390)
Q Consensus 344 ~~Lr~ 348 (390)
..+-+
T Consensus 154 ~~l~d 158 (371)
T PF14664_consen 154 RALID 158 (371)
T ss_pred HHHHh
Confidence 66654
No 89
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.77 E-value=0.88 Score=46.67 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc-CC---CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 250 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~-s~---~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~ 250 (390)
.+.|=..|+.++.+...|.|.+...+.+.|.++.++.-+. .. +.++-...-.+|+++|=| ..+++.|.+.+-+..
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~ 200 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDK 200 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHH
Confidence 4678889999999999999999999999999999999998 33 234555556777777766 677899999999999
Q ss_pred HHHHhcCC
Q 016423 251 LQDILGNS 258 (390)
Q Consensus 251 L~~lL~s~ 258 (390)
+.+++.++
T Consensus 201 ~f~if~s~ 208 (379)
T PF06025_consen 201 LFEIFTSP 208 (379)
T ss_pred HHHHhCCH
Confidence 99998875
No 90
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.70 E-value=0.3 Score=45.09 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhhC-ChHHHHH----HH------hcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 177 DIRKISAWILGKASQN-NPLVQKQ----VL------ELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 177 ~vR~~Aa~vLgta~QN-Np~~Q~~----~l------e~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
.||..|..+|++++++ +++.=-. ++ ..+.-+.|+..+-.| +..+|..|+.+++.|+.+..+-.....+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999999 5442111 10 122445566665444 4679999999999999886442222211
Q ss_pred cC-------------------cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC-CchhhhhcCchHHHHHhh
Q 016423 245 EA-------------------GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLKSVVDLT 304 (390)
Q Consensus 245 ~g-------------------Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~-~~~~l~~~g~v~~Lv~lL 304 (390)
.+ -...|..+|+..+ +..+....+..+..|++. ...+ ....+. ..++..+-.++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~----tPY~rL~~~ll-~~~v~~v~~~l 154 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQA----TPYHRLPPGLL-TEVVTQVRPLL 154 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHcc----CChhhcCHhHH-HHHHHHHHHHH
Confidence 11 1344555666543 444666777777777751 2222 222222 24455566677
Q ss_pred cCCChhHHHHHHHHHHHHHhcC
Q 016423 305 ASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 305 ~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+.|++++..++.+++.|+...
T Consensus 155 ~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 155 RHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred hcCCCcHHHHHHHHHHHHHcCC
Confidence 8889999999999999998753
No 91
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.68 E-value=0.62 Score=43.32 Aligned_cols=141 Identities=15% Similarity=0.069 Sum_probs=88.3
Q ss_pred CCCChHHHHHHHHHHHHHhhCC--hHHHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 172 NHPDTDIRKISAWILGKASQNN--PLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNN--p~~Q~~~le~--g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
++.+=+.|..|..-|-.++..| ......+.+. ..++.++..+++....+...|+..++.+.++.......+ ...-
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 4556678899999999988888 2233333332 455667777765555678899999999998866665555 2445
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCc-hHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF-LKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~-v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
++.|...+.++ ..-++..|..+|..++.. .+ ....+ ...+...+.+.++.++..++..+..++...
T Consensus 96 l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~-----~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 96 LPPLLKKLGDS--KKFIREAANNALDAIIES-----CS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHGGG-----HHHHHHHHHHHHHHHTT-----S-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHccc--cHHHHHHHHHHHHHHHHH-----CC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 67888888876 345788888999999841 11 01233 566677778889999999999999998753
No 92
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.63 E-value=0.058 Score=34.90 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhC
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~ 234 (390)
.+|.+++++++++..||..|+++|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 379999999999999999999999999876
No 93
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.59 E-value=1.1 Score=46.10 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHhhCChHH-------------HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHH
Q 016423 176 TDIRKISAWILGKASQNNPLV-------------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 242 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~-------------Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f 242 (390)
+++...||..++.++...+.+ +++|+.. .+|+|++-..+.+.+.+...+.|||.+++|-|...-.-
T Consensus 283 ~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~ 361 (415)
T PF12460_consen 283 PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP 361 (415)
T ss_pred hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH
Confidence 778889999999988884444 5555544 59999999988777788899999999999877654333
Q ss_pred HHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 243 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 243 ~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.-..-+++|.+.|..+ +..++.-++..+..++.
T Consensus 362 ~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 362 ELPTLLPLLLQSLSLP--DADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 3345689999999876 55688899999999985
No 94
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.54 E-value=0.71 Score=51.09 Aligned_cols=131 Identities=19% Similarity=0.223 Sum_probs=98.7
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
+.+.++|..-=--+=..++.+| +...+ +++.+.+=+.++++.+|..|+..+|.+ |- .++. ..-+..+.
T Consensus 66 trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l-~~-----~el~-~~~~~~ik 133 (757)
T COG5096 66 TRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQDPNEEIRGFALRTLSLL-RV-----KELL-GNIIDPIK 133 (757)
T ss_pred hcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhc-Ch-----HHHH-HHHHHHHH
Confidence 5567777777777777788888 44444 466777778888888999999999887 22 2221 23467888
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+++.++ ...+|++|+.++..+.+ -++ ..+.+.|.+..+..++...|+.+.-.|+.+|..+-..
T Consensus 134 ~~l~d~--~ayVRk~Aalav~kly~-----ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 134 KLLTDP--HAYVRKTAALAVAKLYR-----LDK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHccCC--cHHHHHHHHHHHHHHHh-----cCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 999887 56899999999999984 232 3455778999999999999999999999888887653
No 95
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.24 E-value=0.9 Score=44.22 Aligned_cols=184 Identities=14% Similarity=0.090 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHhhccccccc---------------------ccCCCCC--hH--HHH-HHHHHHHHHhhCChHHHHH
Q 016423 146 SLEDSQRALQELLILVEPIDNAN---------------------GQLNHPD--TD--IRK-ISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnAn---------------------~lL~s~~--~~--vR~-~Aa~vLgta~QNNp~~Q~~ 199 (390)
.++.|+.||.+|..--|.+++-. ..|+.++ +. -|. .|..++-.+++ +|+.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 45778888888887777765432 4555432 22 222 23333334444 8999999
Q ss_pred HHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhCCccchHHH-HHcCcHHHHHHHhcCCChhHHHHHHHHHHHH
Q 016423 200 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMF-YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 273 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f-~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs 273 (390)
|++.+..--|...|+..+ +-+|..++.-|+++++...+-.-.| ....-++...+++... +.--|.-|.|.+.
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlq 164 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQ 164 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 999997666777776554 2478999999999999765554455 4556678888888765 4456888999999
Q ss_pred HHhhhh--hhcCCCCCchhh-hhcCchHHHH-HhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 274 DLAKCQ--LENMHKVEPPLF-RDRFFLKSVV-DLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 274 ~L~~~~--l~~~~~~~~~~l-~~~g~v~~Lv-~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
.++... +.... ...+.| .=..++..++ .+...++..+..++.+|-..|.... ..+..++
T Consensus 165 KIL~dd~GL~yiC-~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~aL~ 227 (262)
T PF04078_consen 165 KILLDDVGLNYIC-QTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREALR 227 (262)
T ss_dssp HHHHSHHHHHHHT-SSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHHHH
T ss_pred HHHcchhHHHHHh-cCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHHHH
Confidence 998632 11000 111222 1123333333 3445568899999999999988754 4454444
No 96
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.10 E-value=0.64 Score=45.22 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchH
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 298 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~ 298 (390)
.+...|+..|-.+|=-||+.+..|....++.+|+++|... .++.++..++-+|-.++- .++.....|.+.+-+.
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~-~~~~i~~a~L~tLv~iLl-----d~p~N~r~FE~~~Gl~ 179 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS-NPPAIQSACLDTLVCILL-----DSPENQRDFEELNGLS 179 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC-CCchHHHHHHHHHHHHHH-----cChHHHHHHHHhCCHH
Confidence 3566788899999999999999999999999999999543 256788888887777774 4677777899999999
Q ss_pred HHHHhhcCC--ChhHHHHHHHHHHHHHhc
Q 016423 299 SVVDLTASA--DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 299 ~Lv~lL~~~--d~~v~EkAL~aL~~L~~~ 325 (390)
.++.++++. +.+++-|++..|.-.+..
T Consensus 180 ~v~~llk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 180 TVCSLLKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HHHHHHccccccHHHhHHHHHHHHHHHcc
Confidence 999999875 778999999988877754
No 97
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=93.95 E-value=0.62 Score=48.81 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=117.7
Q ss_pred ccCCCCCh--HHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHc
Q 016423 169 GQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVE 245 (390)
Q Consensus 169 ~lL~s~~~--~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~ 245 (390)
+++.+++- .||..|+.+|-.+... ...+.+...| +..++.+.+.. +.+.+.-.+.-|..+.+|.......++..
T Consensus 187 rmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa 263 (832)
T KOG3678|consen 187 RMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAA 263 (832)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Confidence 45555554 5799999999877543 2466677666 77777777543 35678888899999999998888999999
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 246 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
||+..++--.... ++.+.+.++..|.+.+- ...-..+..+++..+..-|..+-.+.|.-++-+|..|+..|++.
T Consensus 264 ~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L----~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 264 GGLDAVLYWCRRT--DPALLRHCALALGNCAL----HGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred cccchheeecccC--CHHHHHHHHHHhhhhhh----hchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 9998887777654 57788899888888874 23445566677777777788877777888999999999999987
Q ss_pred ChhHHHHHH
Q 016423 326 RTTEALVLK 334 (390)
Q Consensus 326 ~~~~r~~~~ 334 (390)
.+-.| ..+
T Consensus 338 KE~E~-~Vr 345 (832)
T KOG3678|consen 338 KEVER-EVR 345 (832)
T ss_pred hhhhH-HHh
Confidence 54444 344
No 98
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=93.93 E-value=0.36 Score=50.49 Aligned_cols=126 Identities=16% Similarity=0.076 Sum_probs=87.4
Q ss_pred hHHHHHHHhcCcHHHHHHhh---------c-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCC-----
Q 016423 194 PLVQKQVLELGALSKLMKMV---------K-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS----- 258 (390)
Q Consensus 194 p~~Q~~~le~g~l~~Ll~LL---------~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~----- 258 (390)
|..-+.++...++..|+++. . ..+..+..-|+-+|+|++-+++.++..|.+.|+...+...|+..
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 33444444445566676666 2 23457899999999999999999999999999999999999754
Q ss_pred -ChhHHHHHHHHHHHHHHhhhhhhcCCCCCch-hhhhcCchHHHHHhhcC-----------------CChhHHHHHHHHH
Q 016423 259 -SFEIRLHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTAS-----------------ADLDLQEKALAAI 319 (390)
Q Consensus 259 -~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~-~l~~~g~v~~Lv~lL~~-----------------~d~~v~EkAL~aL 319 (390)
.+..-+-.|.+|+++++.. +.+. .+.+++.+..++..|.. .+......+|..+
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~--------~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKll 163 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRP--------DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLL 163 (446)
T ss_pred ChhHHHHHHHHHHHHhcCCh--------hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHH
Confidence 3445567788888887652 3333 34455677777665511 1445667778888
Q ss_pred HHHHhcCh
Q 016423 320 KNLLQLRT 327 (390)
Q Consensus 320 ~~L~~~~~ 327 (390)
.++..+.+
T Consensus 164 FNit~~~~ 171 (446)
T PF10165_consen 164 FNITLHYP 171 (446)
T ss_pred HHhhhccC
Confidence 88876644
No 99
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=0.54 Score=50.99 Aligned_cols=145 Identities=13% Similarity=0.129 Sum_probs=97.9
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC---
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--- 246 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g--- 246 (390)
.|...++-||...--+|.|+++.. ..|.+ ..++|.|..+|.+.+-....-|+.||+-+|-+...-.+.=....
T Consensus 98 ~lgd~~~lIr~tvGivITTI~s~~-~~~~w---pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~ 173 (885)
T KOG2023|consen 98 GLGDASPLIRATVGIVITTIASTG-GLQHW---PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN 173 (885)
T ss_pred hccCchHHHHhhhhheeeeeeccc-ccccc---hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH
Confidence 344566677777777777775553 34554 45799999999988767788999999999987554322111111
Q ss_pred -cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 247 -GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 247 -Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
-++-+.++++++ ++++|..|++.+...+.- .. ..-.+.-..++..+..+-...++.||..+.+++.-|+..
T Consensus 174 ~mipkfl~f~~h~--spkiRs~A~~cvNq~i~~-----~~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 174 IMIPKFLQFFKHP--SPKIRSHAVGCVNQFIII-----QT-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred HhHHHHHHHHhCC--ChhHHHHHHhhhhheeec-----Cc-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 245666677776 788999999999887741 11 111122245666777777677888999998888888875
Q ss_pred C
Q 016423 326 R 326 (390)
Q Consensus 326 ~ 326 (390)
.
T Consensus 246 r 246 (885)
T KOG2023|consen 246 R 246 (885)
T ss_pred c
Confidence 4
No 100
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=93.44 E-value=0.77 Score=40.19 Aligned_cols=106 Identities=22% Similarity=0.230 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-h
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-P 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p 194 (390)
++.+|-.......|...+.+..+.++.......+-..+ |. +-|.+.++.++..|..++-++++|. +
T Consensus 9 li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~---l~----------krl~~~~~~vq~~aL~lld~lvkNcg~ 75 (140)
T PF00790_consen 9 LIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARA---LR----------KRLKHGNPNVQLLALTLLDALVKNCGP 75 (140)
T ss_dssp HHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHH---HH----------HHHTTSSHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHH---HH----------HHHhCCCHHHHHHHHHHHHHHHHcCCH
Confidence 34444444334445666666666666653333333322 22 2457899999999999999999996 7
Q ss_pred HHHHHHHhcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHHhhC
Q 016423 195 LVQKQVLELGALSKLMKMVKSSF-VE---EAVKALYTVSSLIRN 234 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~~-~~---vr~kAL~ALSsLiR~ 234 (390)
.++..+.....+..|.+++.+.. .. |+.|++--|..--..
T Consensus 76 ~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 76 RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 88888888889999999987654 33 888888777665443
No 101
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.33 E-value=0.49 Score=45.56 Aligned_cols=147 Identities=21% Similarity=0.286 Sum_probs=83.1
Q ss_pred cccCCcCCCC--CCChHHHHHhHhhcCCCCCcc-ccccccCCCCHHHHHHhHHHHHHHHHHcCCC-ChHHHHHHHHHHHh
Q 016423 66 VNDHDELDGG--FSSIDGMLQWAIGHSDPAKLK-ETAQDVQRLSPSELKKRQMEIKELMEKLKTP-SDAQLIQIAIDDLN 141 (390)
Q Consensus 66 ~~~~~~~~~~--~~~~~gLLkwsi~~s~~~~~~-~~~~~~~~~s~e~l~~r~~~L~eal~~~~~~-~d~~~Mk~~l~~l~ 141 (390)
..|-.++|-. .|-++|||+|++--+.....+ .+..+..++||..+. =|+|-++.+. .-+++ ++.
T Consensus 96 qLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrla------LEaLcKLsV~e~NVDl------iLa 163 (257)
T PF12031_consen 96 QLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLA------LEALCKLSVIENNVDL------ILA 163 (257)
T ss_pred eeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHH------HHHHHHhheeccCcce------eee
Confidence 3445666655 477999999999744332210 022345679996432 3455555431 11110 011
Q ss_pred cCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHH-HHHHHhcCcHHHHHHhhcCCCHH-
Q 016423 142 NSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKMVKSSFVE- 219 (390)
Q Consensus 142 ~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~-Q~~~le~g~l~~Ll~LL~s~~~~- 219 (390)
.+. -...+..+..|-.++. ..+++-.|+-|.-+|.+++|..... +....+.+++..|+..+......
T Consensus 164 Tpp--~sRlE~l~~~L~r~l~---------~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 164 TPP--FSRLERLFHTLVRLLG---------MREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNA 232 (257)
T ss_pred CCC--HHHHHHHHHHHHHHhc---------cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 111 1112222233333221 3578889999999999999996554 46677789999999999754332
Q ss_pred HHHHHHHHHHHHhhCCcc
Q 016423 220 EAVKALYTVSSLIRNNLA 237 (390)
Q Consensus 220 vr~kAL~ALSsLiR~~~~ 237 (390)
....--+-+.. |+||+
T Consensus 233 ~~~~~q~g~~~--~~np~ 248 (257)
T PF12031_consen 233 HQVASQHGMQA--RDNPE 248 (257)
T ss_pred HHHHhhhhhhc--ccCcc
Confidence 23333333444 66654
No 102
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.29 E-value=2.8 Score=43.50 Aligned_cols=89 Identities=19% Similarity=0.014 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc-cccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSK 208 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~-IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~ 208 (390)
.+.....+..+.+. .+.-+..++.-+...-++ ..-...+|+++++.||..|+.+||.+-.- ..+|.
T Consensus 116 ~~a~~~L~~~L~~~--~p~vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~ 182 (410)
T TIGR02270 116 RQAEPWLEPLLAAS--EPPGRAIGLAALGAHRHDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSEST 182 (410)
T ss_pred hHHHHHHHHHhcCC--ChHHHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHH
Confidence 34444444555433 333444555444443222 11112677788888888888888887332 35777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHH
Q 016423 209 LMKMVKSSFVEEAVKALYTVSSL 231 (390)
Q Consensus 209 Ll~LL~s~~~~vr~kAL~ALSsL 231 (390)
|...+.+.++.||..|+.+++-+
T Consensus 183 L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 183 LRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHc
Confidence 88888888888888888887544
No 103
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=5 Score=43.08 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=79.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc-cchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~-~a~~~f~~~gG 247 (390)
++|.++..+-|..+..-|..+ +++-..|-.+.....++.|++-|++.++.|..+++.-++++|.... ++...|.
T Consensus 343 ~~l~~~~~~tri~~L~Wi~~l-~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl---- 417 (675)
T KOG0212|consen 343 KYLSDDREETRIAVLNWIILL-YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFL---- 417 (675)
T ss_pred HHhhcchHHHHHHHHHHHHHH-HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHH----
Confidence 789999999999999999999 5555578878888999999999999999999999999999998743 3444442
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.-|.+.+..+ ..-+..++.+.++.||.
T Consensus 418 -~sLL~~f~e~--~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 418 -LSLLEMFKED--TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred -HHHHHHHhhh--hHHHHhhhhHHHHHHHH
Confidence 2344444444 45578899999999985
No 104
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=93.13 E-value=0.47 Score=42.18 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=98.8
Q ss_pred CcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 204 GALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 204 g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
+.+..|+.-.... +.+.+...+--|.|..-+ |.+.....+.+.+.+.+..|..+ +..+..-+..-|+++|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~--ne~LvefgIgglCNlC------ 86 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQ--NELLVEFGIGGLCNLC------ 86 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcc--cHHHHHHhHHHHHhhc------
Confidence 4566677666654 456677788778887655 77888999999999999999987 7789999999999999
Q ss_pred CCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHHh
Q 016423 283 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV 353 (390)
Q Consensus 283 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~el 353 (390)
.++...+.+++.+-++.++..++++.....-.++.++.-|.-.+...|..+ +.+.+-++-+.+.+.
T Consensus 87 ~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~el-----l~p~Vv~~v~r~~~s 152 (173)
T KOG4646|consen 87 LDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDEL-----LSPAVVRTVQRWRES 152 (173)
T ss_pred cChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHh-----ccHHHHHHHHHHHHH
Confidence 477778889999999999999999876666666666655554333333322 344445555555543
No 105
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.00 E-value=0.93 Score=41.15 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCch
Q 016423 218 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 297 (390)
Q Consensus 218 ~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v 297 (390)
+.+|..++-+++-|+..+|...+.+ .+.+...|.++ ++.+|+.|+..|++|+.+ + .+.-.|-+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~-----d-----~ik~k~~l 64 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCLRDE--DPLVRKTALLVLSHLILE-----D-----MIKVKGQL 64 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCC--CHHHHHHHHHHHHHHHHc-----C-----ceeehhhh
Confidence 4689999999999999888766555 57888999987 678999999999999952 1 11112333
Q ss_pred -HHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 298 -KSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 298 -~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..++.++..+|.+++..|..++..+...
T Consensus 65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 65 FSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 6777888888999999999999998874
No 106
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=0.68 Score=49.20 Aligned_cols=154 Identities=11% Similarity=0.124 Sum_probs=112.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-hHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-~~~f~~~gG 247 (390)
+.|+.|+.-|...+...+++.+=-=...|..|++.|.|..|+.++.+.+..++.+.+|.+--++-|+... +-+|....|
T Consensus 438 ~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig 517 (743)
T COG5369 438 DALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIG 517 (743)
T ss_pred HHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcC
Confidence 4555555556666777777766665568999999999999999999888889999999999999887765 447888999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcC----chHHHHHhhcCC-ChhHHHHHHHHHHHH
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF----FLKSVVDLTASA-DLDLQEKALAAIKNL 322 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g----~v~~Lv~lL~~~-d~~v~EkAL~aL~~L 322 (390)
.+.++....++ +-+++.....++.+++-.. .-+++.++.+.+.. +.+.+++-+... ..++++..-..+...
T Consensus 518 ~~kvl~~~NDp--c~~vq~q~lQilrNftc~~--~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~a 593 (743)
T COG5369 518 VEKVLSYTNDP--CFKVQHQVLQILRNFTCDT--SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNA 593 (743)
T ss_pred HHHHHHHhcCc--ccccHHHHHHHHHhccccc--ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Confidence 99999999887 6889999999999997410 01244444444332 444555555555 456677766656665
Q ss_pred HhcC
Q 016423 323 LQLR 326 (390)
Q Consensus 323 ~~~~ 326 (390)
++++
T Consensus 594 a~d~ 597 (743)
T COG5369 594 ACDD 597 (743)
T ss_pred hccc
Confidence 5544
No 107
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.98 E-value=3.3 Score=44.54 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHH
Q 016423 113 RQMEIKELMEKLKTPSDAQLIQIAIDDL----NNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGK 188 (390)
Q Consensus 113 r~~~L~eal~~~~~~~d~~~Mk~~l~~l----~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgt 188 (390)
+.+..+..|+..++. ..+|+....+ -.. =++-...|++.+.+|||+ ++..||.+|..-|-.
T Consensus 21 ~~~~y~~il~~~kg~---~k~K~Laaq~I~kffk~--FP~l~~~Ai~a~~DLcED----------ed~~iR~~aik~lp~ 85 (556)
T PF05918_consen 21 HEEDYKEILDGVKGS---PKEKRLAAQFIPKFFKH--FPDLQEEAINAQLDLCED----------EDVQIRKQAIKGLPQ 85 (556)
T ss_dssp GHHHHHHHHHGGGS----HHHHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHT-----------SSHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHccCC---HHHHHHHHHHHHHHHhh--ChhhHHHHHHHHHHHHhc----------ccHHHHHHHHHhHHH
Confidence 455667777765552 2244433332 221 245566789999999987 568999999999999
Q ss_pred HhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHH
Q 016423 189 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 268 (390)
Q Consensus 189 a~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA 268 (390)
+|.+||..-.. +...|++||.+++......+=.+|.++++..|.+.-. .++.+++..+..+..+|.++
T Consensus 86 ~ck~~~~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~-------~lf~~i~~~~~~de~~Re~~ 153 (556)
T PF05918_consen 86 LCKDNPEHVSK-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT-------GLFSQIESSKSGDEQVRERA 153 (556)
T ss_dssp G--T--T-HHH-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHH---HS-HHHHHHH
T ss_pred HHHhHHHHHhH-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH-------HHHHHHHhcccCchHHHHHH
Confidence 99998754433 4668999999988777777778888888877764221 12333332222355689999
Q ss_pred HHHHHHHh
Q 016423 269 VSLVGDLA 276 (390)
Q Consensus 269 ~~LLs~L~ 276 (390)
+.+|..=+
T Consensus 154 lkFl~~kl 161 (556)
T PF05918_consen 154 LKFLREKL 161 (556)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHH
Confidence 87765444
No 108
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.89 E-value=1.3 Score=45.65 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCc------------------
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNL------------------ 236 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~------------------ 236 (390)
-.++=+.+.|+=-+.-|-+.+ +.+...+.|+.|..+++++.. .|-+=.+..+-+++-..|
T Consensus 214 ~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~ 292 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVL 292 (442)
T ss_pred hhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCch
Confidence 345556777777776665544 556777899999999986542 233334444444443332
Q ss_pred --------------------------------------------------------------cchHHHHHcC--cHHHHH
Q 016423 237 --------------------------------------------------------------AGQEMFYVEA--GDLMLQ 252 (390)
Q Consensus 237 --------------------------------------------------------------~a~~~f~~~g--Gl~~L~ 252 (390)
.+...|.+.+ -+.+|+
T Consensus 293 k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~ 372 (442)
T KOG2759|consen 293 KTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILI 372 (442)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHH
Confidence 1233343332 355666
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.+|..++ |+.+..=||+=|...+. ..|..+..+.+.|.-..++++++++|++|+-+|+.|+..|..+
T Consensus 373 ~lLe~s~-Dp~iL~VAc~DIge~Vr-----~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 373 KLLETSN-DPIILCVACHDIGEYVR-----HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHhcCC-CCceeehhhhhHHHHHH-----hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 6666543 44455556666666663 4677888899999999999999999999999999999998864
No 109
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.87 E-value=4.5 Score=45.81 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=121.9
Q ss_pred ccCCCCHHHHHHhHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHH---HHH-------HHHHHHhhccc-cc---
Q 016423 101 DVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDS---QRA-------LQELLILVEPI-DN--- 166 (390)
Q Consensus 101 ~~~~~s~e~l~~r~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~---~~a-------Ld~Le~lve~I-Dn--- 166 (390)
+.+-|--.|| |.+|++..-.+..+++++.++-.++.|.+..-.+.+. -.+ =+.++++||++ +|
T Consensus 20 DfRfMAtsDL---m~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s 96 (1233)
T KOG1824|consen 20 DFRFMATSDL---MTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLS 96 (1233)
T ss_pred chhhhhHHHH---HHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhcc
Confidence 4566655554 5667766544455677788888888888765332211 111 13355555543 22
Q ss_pred -----------------cc----------------------ccC--CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCc
Q 016423 167 -----------------AN----------------------GQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 205 (390)
Q Consensus 167 -----------------An----------------------~lL--~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~ 205 (390)
|| +.+ ..+...|+..++.+++.+.++--..--. +..+.
T Consensus 97 ~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~i 175 (1233)
T KOG1824|consen 97 GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSI 175 (1233)
T ss_pred chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHH
Confidence 11 011 1233346777777777776653222111 22234
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
+..++.-+.+.-..+|.||+++||.+.-..+.. .| .+-+..|.+-|..+ +....-+--..+|..++.+. ..
T Consensus 176 l~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~--ly--~~li~~Ll~~L~~~-~q~~~~rt~Iq~l~~i~r~a----g~ 246 (1233)
T KOG1824|consen 176 LKCLLPQLQSPRLAVRKKAITALGHLASSCNRD--LY--VELIEHLLKGLSNR-TQMSATRTYIQCLAAICRQA----GH 246 (1233)
T ss_pred HHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH--HH--HHHHHHHHhccCCC-CchHHHHHHHHHHHHHHHHh----cc
Confidence 444555555555678999999999987654331 22 23345566666544 22223333556777777532 11
Q ss_pred CCchhhhhcCchHHHHHhh---cCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 286 VEPPLFRDRFFLKSVVDLT---ASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL---~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
.+.. .-..+++.+.+.. ..+|.+++|+.+.++..++. .|+..+-
T Consensus 247 r~~~--h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~---rcp~ei~ 293 (1233)
T KOG1824|consen 247 RFGS--HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR---RCPKEIL 293 (1233)
T ss_pred hhhc--ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH---hChhhhc
Confidence 1111 1235667777776 66789999999999999997 4666664
No 110
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=92.46 E-value=1.8 Score=45.43 Aligned_cols=144 Identities=14% Similarity=0.076 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhh--ccccc-cc----ccC----CCCChHHHHHHHHHHHHHhhCChHHHHHHH
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILV--EPIDN-AN----GQL----NHPDTDIRKISAWILGKASQNNPLVQKQVL 201 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lv--e~IDn-An----~lL----~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~l 201 (390)
+-..+.++..++....-++.+-.-||++. ++.|. || ..| ..+.+++....+.+|+++.......-+.++
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34456677777765555555544444332 22232 22 122 256778999999999999998666666688
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhh
Q 016423 202 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 278 (390)
Q Consensus 202 e~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~-~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~ 278 (390)
+.|++..++--....++.+...+..||+|+.-| ....+...++...-+-|..+-.+. |.-+|-.||..+.-|++.
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLHACLAVAVLATN 337 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHHHHHHHhhhhhh
Confidence 889999988888877777777777788886554 566677777777777666655554 556899999999999864
No 111
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.26 E-value=1.4 Score=36.40 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCC
Q 016423 179 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 258 (390)
Q Consensus 179 R~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~ 258 (390)
|..+...|+.++...++.=...++ -.+|+++..+.+.+..||..|..||-++++......-. .-..-+..|..++.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 556667777776654444222222 37999999999988899999999999998886553322 1245678888888876
Q ss_pred ChhHHHHHHHHHHHHHHh
Q 016423 259 SFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 259 ~~d~klr~KA~~LLs~L~ 276 (390)
+..+|. ++.+|-.|+
T Consensus 81 --d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 81 --DENVRS-AAELLDRLL 95 (97)
T ss_pred --chhHHH-HHHHHHHHh
Confidence 555554 556666665
No 112
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=92.24 E-value=3.9 Score=36.04 Aligned_cols=107 Identities=15% Similarity=0.085 Sum_probs=75.6
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-hH
Q 016423 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-PL 195 (390)
Q Consensus 117 L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p~ 195 (390)
+.+|=+......|.+.+.+..+.++.....+.+-..++..= +-.+.++.+.-.|..+|-++++|. +.
T Consensus 6 IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkR------------l~~~~n~~v~l~aL~LLe~~vkNCG~~ 73 (141)
T cd03565 6 IEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKR------------LNGNKNHKEVMLTLTVLETCVKNCGHR 73 (141)
T ss_pred HHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHH------------HccCCCHHHHHHHHHHHHHHHHHccHH
Confidence 34443333334577888888888877665555555544321 223578889999999999999995 68
Q ss_pred HHHHHHhcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhhCC
Q 016423 196 VQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 196 ~Q~~~le~g~l~~-Ll~LL~s~---~~~vr~kAL~ALSsLiR~~ 235 (390)
++..+...+.+.. |++++... +..|+.|.+.-|-+....+
T Consensus 74 fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 74 FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 8888888899987 99999742 3478888887777765544
No 113
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.87 E-value=1.4 Score=39.67 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=82.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc--HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG--l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
....+..+|.+.+..-|-.++.-+..++..+++ +.|..+++ +..|..+|+.+ .+..++.-++..+.+|+... .
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~--~ 100 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLI--R 100 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh--c
Confidence 566788899988877788999899999988764 56656655 57788888876 36778889999999998632 2
Q ss_pred CCCCCchhhhh---cCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 283 MHKVEPPLFRD---RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 283 ~~~~~~~~l~~---~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..++....+.- .++++.++.+++. ....+.++.+|..++..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 34444333322 2455555555554 67889999999999974
No 114
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=91.83 E-value=2 Score=38.96 Aligned_cols=105 Identities=13% Similarity=0.190 Sum_probs=72.7
Q ss_pred hHHHHHcCcHHHHHHHhcCCCh----hHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHH
Q 016423 239 QEMFYVEAGDLMLQDILGNSSF----EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQ 312 (390)
Q Consensus 239 ~~~f~~~gGl~~L~~lL~s~~~----d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~ 312 (390)
...|+..||+..|...+.+... ...+...++..+..|.. +....=...+..+++.++..++.. |..+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMe------Hg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~ 77 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELME------HGIVSWDTLSDSFIKKIASYVNSSAMDASIL 77 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHh------cCcCchhhccHHHHHHHHHHHccccccchHH
Confidence 3589999999999999987632 12455666666666662 222121245677888888888765 78999
Q ss_pred HHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHH
Q 016423 313 EKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 349 (390)
Q Consensus 313 EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~ 349 (390)
..||..|.+++..++.-.+.+.+.-.++.++.-|+..
T Consensus 78 q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~ 114 (160)
T PF11841_consen 78 QRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVS 114 (160)
T ss_pred HHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC
Confidence 9999999999987765445555455566666666543
No 115
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=91.58 E-value=1.2 Score=43.87 Aligned_cols=86 Identities=19% Similarity=0.158 Sum_probs=65.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.+++..+|..|++.+|..-.. -++|.|..++.+.+..+|..|++||+.+ +++ ..+
T Consensus 50 ~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~---------~a~ 107 (335)
T COG1413 50 KLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGEL--GDP---------EAV 107 (335)
T ss_pred HHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHcc--CCh---------hHH
Confidence 466778899999999997776322 2689999999998889999999977765 222 245
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+.|+.+|..+ .+..+|..+++.|..+-.
T Consensus 108 ~~li~~l~~d-~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 108 PPLVELLEND-ENEGVRAAAARALGKLGD 135 (335)
T ss_pred HHHHHHHHcC-CcHhHHHHHHHHHHhcCc
Confidence 6677777743 377899999999998864
No 116
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.56 E-value=4.2 Score=45.22 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=71.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+=|.++++.||..|...++.+= .+ -+-..+++++.+++.+.++-||.+|.+||..+=|=.+ +.+.+.|-.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~-----~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~ 168 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLR-----VK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLI 168 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcC-----hH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHH
Confidence 4567899999999999998871 22 2223478899999999888999999999999875433 344455566
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..+..++.+. ++.+.+.|+..+..+..
T Consensus 169 ~~l~~l~~D~--dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 169 DILKELVADS--DPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHhhCC--CchHHHHHHHHHHHhch
Confidence 6667766665 67788888888877654
No 117
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.43 E-value=14 Score=38.01 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=79.5
Q ss_pred HHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc--------chHHHHHc----CcHHHHHHH
Q 016423 187 GKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--------GQEMFYVE----AGDLMLQDI 254 (390)
Q Consensus 187 gta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~--------a~~~f~~~----gGl~~L~~l 254 (390)
|-+..|+|...+ .+..|+.++.+ .++...|.-++.-++.+.+. ..+-++.. --++.|++.
T Consensus 260 aLv~R~~~~~~~------~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~ 331 (415)
T PF12460_consen 260 ALVMRGHPLATE------LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEG 331 (415)
T ss_pred HHHHcCCchHHH------HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHH
Confidence 445566665554 46779999987 44566666677777766322 22222222 235555665
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh--hcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.... +...|..-+.+|++++. +-| .+.+. -..++|.+++.|..+|.+++..++.+|..++...
T Consensus 332 ~~~~--~~~~k~~yL~ALs~ll~-----~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 332 FKEA--DDEIKSNYLTALSHLLK-----NVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred Hhhc--ChhhHHHHHHHHHHHHh-----hCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 5544 22267777888888885 222 11111 1468888999999999999999999999999854
No 118
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.26 E-value=3.4 Score=45.69 Aligned_cols=196 Identities=16% Similarity=0.135 Sum_probs=117.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhhccccccc------------
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSL---------------EDSQRALQELLILVEPIDNAN------------ 168 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~---------------e~~~~aLd~Le~lve~IDnAn------------ 168 (390)
.+++++++=...+-.+-||+.+..+-+.+.-+ .+....|--+-++|..-|+-+
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna 103 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNA 103 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHH
Confidence 45777764233445578999999888877433 223333444445555554422
Q ss_pred --ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 --GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 --~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
+-|.|||+=||-....-|+++ ++.=+-...+|.+...|.+...=||+.|+.||-++-+++. +.-..
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckL-------kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-----~L~pD 171 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKL-------KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-----HLIPD 171 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhc-------CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-----hhcCC
Confidence 568899999999999998887 1112223468888888988888899999999999987732 22345
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh----hh-c--CCC----CCc-------------hhhhhcCchHHHHH
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----LE-N--MHK----VEP-------------PLFRDRFFLKSVVD 302 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~----l~-~--~~~----~~~-------------~~l~~~g~v~~Lv~ 302 (390)
+-+++.++|.... |+.-+|+|...|...-.+. +. + .-+ ... ..-.+.-+++.+.+
T Consensus 172 apeLi~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~ 250 (948)
T KOG1058|consen 172 APELIESFLLTEQ-DPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYN 250 (948)
T ss_pred hHHHHHHHHHhcc-CchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHH
Confidence 6666777765442 5556666654443322211 00 0 011 110 01124567778888
Q ss_pred hhcCCChhHHHHHHHHHHHHHh
Q 016423 303 LTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 303 lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+|.+.+..+.-.|..+|.+|..
T Consensus 251 lL~stssaV~fEaa~tlv~lS~ 272 (948)
T KOG1058|consen 251 LLSSTSSAVIFEAAGTLVTLSN 272 (948)
T ss_pred HHhcCCchhhhhhcceEEEccC
Confidence 9987766665555544444443
No 119
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.24 E-value=6.3 Score=38.71 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=75.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHH-----
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV----- 244 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~----- 244 (390)
.+.|+++.||..|..|+|-++-=+.+.-.. .++.+...+..++..++..|+.+|.-++..|....-.-..
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 568899999999999999998877633322 3777888887777889999999999988877643222111
Q ss_pred ---cCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 245 ---EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 245 ---~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..-..++.+.+.+. +..++.-|+--++-|+-
T Consensus 110 ~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLL 143 (298)
T ss_pred chHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHh
Confidence 22356677777766 56689999999998874
No 120
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=91.23 E-value=0.85 Score=35.93 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 179 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 179 R~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
...|.|++|++++. |.-...+-+.+.++.++++....+ ..+|--|.|+|+=+.+. ..+.+.+.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~ 67 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILD 67 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHH
Confidence 46799999999876 445555667899999999998765 57899999999876554 55555443
No 121
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=1.3 Score=48.88 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=93.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+=|+|++--+...|.-+||+++.- .-++ ...|.+-+++++.++-+|.||+.|.--++|.-|.-.+.|..
T Consensus 114 nDL~s~nq~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~---- 182 (866)
T KOG1062|consen 114 NDLNSSNQYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI---- 182 (866)
T ss_pred hhccCCCeeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH----
Confidence 568899999999999999999654 2222 36788889999988889999999999999998888777752
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc---------------CCChhHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------------SADLDLQE 313 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---------------~~d~~v~E 313 (390)
....+|.++ +.-+-.-++.++..||. .+++....+.+ +++.+|..|+ -+|+-+|-
T Consensus 183 -~~~~lL~ek--~hGVL~~~l~l~~e~c~-----~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi 252 (866)
T KOG1062|consen 183 -AFRKLLCEK--HHGVLIAGLHLITELCK-----ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI 252 (866)
T ss_pred -HHHHHHhhc--CCceeeeHHHHHHHHHh-----cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHH
Confidence 334445544 23345566677777774 34444444443 5555555441 13566777
Q ss_pred HHHHHHHHHHhcC
Q 016423 314 KALAAIKNLLQLR 326 (390)
Q Consensus 314 kAL~aL~~L~~~~ 326 (390)
+.|+.|.-|-+..
T Consensus 253 ~iLrlLriLGq~d 265 (866)
T KOG1062|consen 253 RILRLLRILGQND 265 (866)
T ss_pred HHHHHHHHhcCCC
Confidence 7777766666543
No 122
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=90.98 E-value=3.6 Score=40.53 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=41.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSL 231 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsL 231 (390)
.+|.+.++.+|..|+.+||.+ .+ ...++.|+.++.. .+..+|..|.++|..+
T Consensus 81 ~~l~d~~~~vr~~a~~aLg~~-~~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 81 ELLSDEDPRVRDAAADALGEL-GD----------PEAVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred HHhcCCCHHHHHHHHHHHHcc-CC----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 467788889999999988877 21 2368999999985 6677999999999876
No 123
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=5.8 Score=45.65 Aligned_cols=167 Identities=17% Similarity=0.132 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhcc-ccccc----------------ccC-CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHH
Q 016423 149 DSQRALQELLILVEP-IDNAN----------------GQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 210 (390)
Q Consensus 149 ~~~~aLd~Le~lve~-IDnAn----------------~lL-~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll 210 (390)
..+-+|..|.-+|.- -|-|. .+| .+.++.|+..|..+|..+..|-| |-+.+.+.|.+-.|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHHHHH
Confidence 334456666665543 35564 223 35788899999999999977765 777788889999999
Q ss_pred HhhcCCCHHHHH---HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC
Q 016423 211 KMVKSSFVEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE 287 (390)
Q Consensus 211 ~LL~s~~~~vr~---kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~ 287 (390)
.||.+-+ +.|. ..+|||++ ++.-..+-.++||+..|..++-.. +....|..|+-|+..|..+.+ ..|..
T Consensus 1820 ~lLHS~P-S~R~~vL~vLYAL~S----~~~i~keA~~hg~l~yil~~~c~~-~~~QqRAqaAeLlaKl~Adkl--~GPrV 1891 (2235)
T KOG1789|consen 1820 TLLHSQP-SMRARVLDVLYALSS----NGQIGKEALEHGGLMYILSILCLT-NSDQQRAQAAELLAKLQADKL--TGPRV 1891 (2235)
T ss_pred HHHhcCh-HHHHHHHHHHHHHhc----CcHHHHHHHhcCchhhhhHHHhcc-CcHHHHHHHHHHHHHhhhccc--cCCce
Confidence 9999864 3444 56677665 355566778899998888877644 256688899999999986442 23322
Q ss_pred chhhh---h-------cCchHHHHHhhcCC--------ChhHHHHHHHHHHHHHh
Q 016423 288 PPLFR---D-------RFFLKSVVDLTASA--------DLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 288 ~~~l~---~-------~g~v~~Lv~lL~~~--------d~~v~EkAL~aL~~L~~ 324 (390)
.-.++ - .+-..+.|+.+..+ +...+.+.-..+..++.
T Consensus 1892 ~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~ 1946 (2235)
T KOG1789|consen 1892 TITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVG 1946 (2235)
T ss_pred eeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHH
Confidence 11111 1 12236677777543 34556666666666653
No 124
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.26 E-value=2.6 Score=46.32 Aligned_cols=145 Identities=19% Similarity=0.158 Sum_probs=97.0
Q ss_pred HHHHHcCCCChH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------ccCCCCChHHHHHHHHHHHHHh
Q 016423 119 ELMEKLKTPSDA-QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------GQLNHPDTDIRKISAWILGKAS 190 (390)
Q Consensus 119 eal~~~~~~~d~-~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------~lL~s~~~~vR~~Aa~vLgta~ 190 (390)
.+.+++.-.+|. .+....+....+ +...=+--.||+=|.-++ ..|-|+ .+|+|+-+=+|..|.-++-.+.
T Consensus 95 aa~qSf~~~tdvlmL~tn~~rkdl~-S~n~ye~giAL~GLS~fv-TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvF 172 (877)
T KOG1059|consen 95 AASQSFHDDTDVLMLTTNLLRKDLN-SSNVYEVGLALSGLSCIV-TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVF 172 (877)
T ss_pred HHHHhhcCCccHHHHHHHHHHHHhc-cCccchhhheeccccccc-CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 455665433322 233333333333 334445556777776666 445555 6899999999999999998885
Q ss_pred hCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHH
Q 016423 191 QNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 270 (390)
Q Consensus 191 QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~ 270 (390)
---|..-. -++|+|..-|.++++.|...|+..|+-|.|.||.+.-.+. +.+..+|.+.+ +.=+..|.+-
T Consensus 173 LkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA-----P~ffkllttSs-NNWmLIKiiK 241 (877)
T KOG1059|consen 173 LKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA-----PLFYKLLVTSS-NNWVLIKLLK 241 (877)
T ss_pred HhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc-----HHHHHHHhccC-CCeehHHHHH
Confidence 55443221 3699999999999999999999999999999999866552 45555655432 3335667777
Q ss_pred HHHHHh
Q 016423 271 LVGDLA 276 (390)
Q Consensus 271 LLs~L~ 276 (390)
++.+|+
T Consensus 242 LF~aLt 247 (877)
T KOG1059|consen 242 LFAALT 247 (877)
T ss_pred HHhhcc
Confidence 777776
No 125
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.18 E-value=19 Score=35.08 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhCCccchHHHHH-cCc
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMFYV-EAG 247 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f~~-~gG 247 (390)
+...-|..-+-+|=-++..+|+.+..|+....=-.|-..|+..+ +-+|..++..|++|+.+.......|.. .+-
T Consensus 90 ~~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeI 169 (293)
T KOG3036|consen 90 PAQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEI 169 (293)
T ss_pred ccccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 44556777777777777888999999999873333444554322 347999999999999998887777764 566
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC----c---hhh-hhcCchHHH-HHhhcCCChhHHHHHHHH
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE----P---PLF-RDRFFLKSV-VDLTASADLDLQEKALAA 318 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~----~---~~l-~~~g~v~~L-v~lL~~~d~~v~EkAL~a 318 (390)
++...+++... +.--|.-|.|.+.-++. ++.- + +.| .-.-++..+ .++.+.++..+..++++|
T Consensus 170 VPlCLrime~G--SelSKtvA~fIlqKIll------dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRc 241 (293)
T KOG3036|consen 170 VPLCLRIMESG--SELSKTVATFILQKILL------DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRC 241 (293)
T ss_pred HHHHHHHHhcc--cHHHHHHHHHHHHHHhh------ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 78888888865 33356677788777763 2211 1 111 112233333 344566789999999999
Q ss_pred HHHHHhcChhHHHHHH
Q 016423 319 IKNLLQLRTTEALVLK 334 (390)
Q Consensus 319 L~~L~~~~~~~r~~~~ 334 (390)
...|... +..|..++
T Consensus 242 YlrLsdn-prar~aL~ 256 (293)
T KOG3036|consen 242 YLRLSDN-PRARAALR 256 (293)
T ss_pred HHHhcCC-HHHHHHHH
Confidence 9998764 45666665
No 126
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=43 Score=39.00 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=105.3
Q ss_pred HHHhHHHHHHHHHHc-CC--CChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhhccccccc---------ccCCCC
Q 016423 110 LKKRQMEIKELMEKL-KT--PSDAQLIQIAIDDLNNST---LSLEDSQRALQELLILVEPIDNAN---------GQLNHP 174 (390)
Q Consensus 110 l~~r~~~L~eal~~~-~~--~~d~~~Mk~~l~~l~~~~---~s~e~~~~aLd~Le~lve~IDnAn---------~lL~s~ 174 (390)
+.-|..||+-....+ .. .+.....++++..+.... ........-||.+--++.-.|+.+ ...++.
T Consensus 587 l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~ 666 (1176)
T KOG1248|consen 587 LASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSS 666 (1176)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccc
Confidence 335888888877443 32 233345666655543322 233344555677766666666665 223567
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
+..+|..+-.+|..+++. |.++..+... .....|.+-+++.+...+..++.+|+.|++.++.-...|+...-.++|+
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL 745 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVIL 745 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 899999999999999988 6666655544 3455666666666667899999999999999884344444444445544
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHh
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
.. +. .+.+.|+.|--+|..|.
T Consensus 746 ~~-Ke--~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 746 SL-KE--VNVKARRNAFALLVFIG 766 (1176)
T ss_pred hc-cc--ccHHHHhhHHHHHHHHH
Confidence 43 33 36667777777777777
No 127
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=9.6 Score=40.45 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=114.6
Q ss_pred HHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChh
Q 016423 183 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 261 (390)
Q Consensus 183 a~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d 261 (390)
..++.++.|.....|..|+++ +.-|..+++.++ .+.-..++..+++|.-..-+-..-....+-++-+...|+.....
T Consensus 485 mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~e 562 (791)
T KOG1222|consen 485 MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADE 562 (791)
T ss_pred HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccc
Confidence 457888999988899999994 667777887665 45677888888888554344344555678889999998743223
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhcChhHHHHHHhhCCc
Q 016423 262 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339 (390)
Q Consensus 262 ~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL 339 (390)
..++...+-.+..++. +.+-...+...|+++.++++|+.. |..+.-..+-...+++.+ +..|..+.....+
T Consensus 563 ddLvL~~vi~~GT~a~------d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~ 635 (791)
T KOG1222|consen 563 DDLVLQIVIACGTMAR------DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETAL 635 (791)
T ss_pred hhhhhHHHHHhhhhhh------hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccc
Confidence 3467777777777663 333334466789999999999774 667777777777788877 3566666666666
Q ss_pred H-HHHHHHHHHHHHhh
Q 016423 340 D-TALERLRQQLQEVM 354 (390)
Q Consensus 340 ~-~~L~~Lr~~l~el~ 354 (390)
. .++..++..+.+.-
T Consensus 636 ~AylIDLMHDkN~eiR 651 (791)
T KOG1222|consen 636 GAYLIDLMHDKNAEIR 651 (791)
T ss_pred hHHHHHHHhcccHHHH
Confidence 3 45666666666543
No 128
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=90.01 E-value=7.2 Score=43.90 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhhcccc--cc-c----------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHH
Q 016423 147 LEDSQRALQELLILVEPID--NA-N----------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMK 211 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~ID--nA-n----------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~ 211 (390)
-.++..||+.+-..+++-- -- + ..+...|..|-..|+.+|.-++--+... +..+ +.+|.|+.
T Consensus 267 WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~---~~~~~~~v~p~lld 343 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL---FRKYAKNVFPSLLD 343 (815)
T ss_pred hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh---hHHHHHhhcchHHH
Confidence 3577888888887777643 10 1 2345677888899999999998876554 3332 67899999
Q ss_pred hhcCCCHHH---HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCc
Q 016423 212 MVKSSFVEE---AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 288 (390)
Q Consensus 212 LL~s~~~~v---r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~ 288 (390)
-+..-...+ .++++-++++.+. . ..-.+.+...+++. .+.++.....++...+.. .++...
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns~~-----l-----~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~----~~~~~~ 407 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNSTP-----L-----SKMSEAILEALKGK--NPQIKGECLLLLDRKLRK----LGPKTV 407 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhccc-----H-----HHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhh----cCCcCc
Confidence 988765444 4566666666111 1 11235666777776 566777776666666642 233444
Q ss_pred hhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 289 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 289 ~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+.---.+++++++...+..+.+||..|++++..+...
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 4444568888888888888999999999999998863
No 129
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.91 E-value=6.7 Score=39.62 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=112.1
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC---cHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLM 250 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g---Gl~~ 250 (390)
+++++--.+-.+|-.|+...+ +-..++....+-.+.+.+..++=++..-|...+..++..|+.....|...+ -+..
T Consensus 135 ~~~dial~~g~mlRec~k~e~-l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~ 213 (335)
T PF08569_consen 135 ENPDIALNCGDMLRECIKHES-LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQK 213 (335)
T ss_dssp GSTTTHHHHHHHHHHHTTSHH-HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred cCccccchHHHHHHHHHhhHH-HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 456666677778888877744 445677788889999999888878999999999998888888888888766 3457
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC-chhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
...+|.++ +-=.|+.++-||+.|+.. ..+... ...+.+..-++.++.+|++....+|-.|-+...-++..+.
T Consensus 214 ~~~Ll~s~--NYvtkrqslkLL~ellld---r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 214 YNKLLESS--NYVTKRQSLKLLGELLLD---RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHCT-S--SHHHHHHHHHHHHHHHHS---GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHccCC--CeEeehhhHHHHHHHHHc---hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 77888876 455899999999999952 122222 3445677889999999999999999999999999998653
No 130
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.87 E-value=3.8 Score=44.70 Aligned_cols=183 Identities=12% Similarity=0.111 Sum_probs=107.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHH
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 250 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~ 250 (390)
|..+--+||.+|...++.++++.|..-.. ++..|+.+++++...||.||++||--+..|-. +...-++.
T Consensus 382 lEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~ 450 (823)
T KOG2259|consen 382 LEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQ 450 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHH
Confidence 34455689999999999999999987765 46779999999888899999999998877621 22334567
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHH
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 330 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r 330 (390)
+...|.+. ++.+|...--+|.+.= -++ .+- + .-++..+...|... +.=+...++|+.-+.+ +++
T Consensus 451 il~~L~D~--s~dvRe~l~elL~~~~-------~~d-~~~-i-~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGq---nH~ 514 (823)
T KOG2259|consen 451 ILESLEDR--SVDVREALRELLKNAR-------VSD-LEC-I-DMCVAHLLKNLGKY-PQDRDEILRCMGRIGQ---NHR 514 (823)
T ss_pred HHHHHHhc--CHHHHHHHHHHHHhcC-------CCc-HHH-H-HHHHHHHHHHhhhC-CCCcHHHHHHHHHHhc---cCh
Confidence 77888765 4545554433333221 111 111 1 11222333333221 1123345566666655 344
Q ss_pred HHHHhhCCcHHHHHHHHHHHHH------hhhhhhhhhhHHHHHH-------------HHHHHHHHHHHHhhhcccccC
Q 016423 331 LVLKDFCGLDTALERLRQQLQE------VMLEEDQRDYAMDVEA-------------LRREVELIFFRKLDDSGSNMI 389 (390)
Q Consensus 331 ~~~~~~~gL~~~L~~Lr~~l~e------l~~~e~~~ey~~dl~~-------------lr~e~~~~~~~~~~~~~~~~~ 389 (390)
..+. .-++.-++. ...+.|+..|...|=- .+.|.+.-+...|+.+-+|..
T Consensus 515 ~lv~---------s~m~rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii~s~Pea~hrhla~Lr~sspnLv 583 (823)
T KOG2259|consen 515 RLVL---------SNMGRFLEKHTSFATIEPSLEDGFYIAKLILVRNAARADPGIIVSRPEAHHRHLAILRCSSPNLV 583 (823)
T ss_pred hhHH---------HHHHHHHHhcccccccCccccChhhhhhhhhhhhhhhhCCCeeeechHHHHHHHHHHhccCCCCC
Confidence 3332 112222222 1124457777766321 236778888888888888864
No 131
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.84 E-value=4.9 Score=44.49 Aligned_cols=119 Identities=14% Similarity=0.263 Sum_probs=64.2
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhh--------h--h---cCCC------CCchhh-------------hhcCchHH
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQ--------L--E---NMHK------VEPPLF-------------RDRFFLKS 299 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~--------l--~---~~~~------~~~~~l-------------~~~g~v~~ 299 (390)
..+|.++ |..+|+|++.+.-+|++.. + | ..+. ..+..+ ....+++.
T Consensus 323 LrvLss~--dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ 400 (948)
T KOG1058|consen 323 LRVLSSP--DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSL 400 (948)
T ss_pred HHHcCcc--cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 4445565 7889999999999998742 1 0 0111 112222 12456677
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcH-HHHHHHHHHHHHhhh--------hhhhhhhHHHHHHHH
Q 016423 300 VVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD-TALERLRQQLQEVML--------EEDQRDYAMDVEALR 370 (390)
Q Consensus 300 Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~-~~L~~Lr~~l~el~~--------~e~~~ey~~dl~~lr 370 (390)
+++++...+...---++..+.... .....|+ ..+++|...+.+.-+ .. ..+||+..+..+
T Consensus 401 ll~fisD~N~~aas~vl~FvrE~i----------ek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi-~GeYce~~~~i~ 469 (948)
T KOG1058|consen 401 LLDFISDSNEAAASDVLMFVREAI----------EKFPNLRASIIEKLLETFPQIRSSKICRGALWI-LGEYCEGLSEIQ 469 (948)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHH----------HhCchHHHHHHHHHHHhhhhhcccccchhHHHH-HHHHHhhhHHHH
Confidence 777777666443333333333333 2233442 334555555554332 44 789998875544
Q ss_pred HHHHHHHHHHhhhc
Q 016423 371 REVELIFFRKLDDS 384 (390)
Q Consensus 371 ~e~~~~~~~~~~~~ 384 (390)
. +-.+-+++||+.
T Consensus 470 ~-~~k~i~~slGEv 482 (948)
T KOG1058|consen 470 S-VIKIIRQSLGEV 482 (948)
T ss_pred H-HHHHHHHhcccc
Confidence 3 334557777764
No 132
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.84 E-value=2.9 Score=45.63 Aligned_cols=156 Identities=14% Similarity=0.067 Sum_probs=108.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHH-HHhc---CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQ-VLEL---GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~-~le~---g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
.+|.+++....+-|..+|..++...+..-+. +... -.||++++..+++++..|.-|+.++-..|-..+.+...-+
T Consensus 135 ~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i- 213 (885)
T KOG2023|consen 135 ELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI- 213 (885)
T ss_pred HHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-
Confidence 3567788788888999999998886654332 2222 2589999999999999999999999887766554422111
Q ss_pred cCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 245 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 245 ~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
-.-++.|..+ .++ .++.+|...|..+..|+.. ......+.+ .++++.+....+..|..+--.|.....+++.
T Consensus 214 D~Fle~lFal-anD-~~~eVRk~vC~alv~Llev----r~dkl~phl--~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 214 DKFLEILFAL-AND-EDPEVRKNVCRALVFLLEV----RPDKLVPHL--DNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHH-ccC-CCHHHHHHHHHHHHHHHHh----cHHhcccch--HHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 1112333332 333 4788999999999999842 111222222 4788888888888888888889999999998
Q ss_pred cChhHHHHHH
Q 016423 325 LRTTEALVLK 334 (390)
Q Consensus 325 ~~~~~r~~~~ 334 (390)
.. .|+..+.
T Consensus 286 qp-i~~~~L~ 294 (885)
T KOG2023|consen 286 QP-ICKEVLQ 294 (885)
T ss_pred Cc-CcHHHHH
Confidence 75 7877765
No 133
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.70 E-value=1.2 Score=39.87 Aligned_cols=95 Identities=18% Similarity=0.075 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHh-cCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le-~g~l~~Ll~LL~--s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
.+-...+..+++++-+--|.+=..++. .|.++.++.+.. +.+..+...++-+|+.-|-+ .....|+..+|++.|.
T Consensus 57 ~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~ 134 (157)
T PF11701_consen 57 MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLK 134 (157)
T ss_dssp CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHH
T ss_pred chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHH
Confidence 346678999999999999998777664 488899999998 66677889999999998755 3456777889999999
Q ss_pred HHhcCCChhHH-HHHHHHHHHH
Q 016423 253 DILGNSSFEIR-LHRKAVSLVG 273 (390)
Q Consensus 253 ~lL~s~~~d~k-lr~KA~~LLs 273 (390)
..++.+. +.. +|..|+-.|.
T Consensus 135 ~~~~~~~-~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 135 ELYKNSK-DDSEIRVLAAVGLC 155 (157)
T ss_dssp HHTTTCC--HH-CHHHHHHHHH
T ss_pred HHHcccc-chHHHHHHHHHHHh
Confidence 9996543 344 6777766554
No 134
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.51 E-value=4.1 Score=42.56 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=88.1
Q ss_pred CCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh-hhcCC---CCCchhhhhcCchHHHHHhhcCC--
Q 016423 234 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ-LENMH---KVEPPLFRDRFFLKSVVDLTASA-- 307 (390)
Q Consensus 234 ~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~-l~~~~---~~~~~~l~~~g~v~~Lv~lL~~~-- 307 (390)
..|.-.--|++.+|++.|..+|...++|+ -.-.+-|+..|+..- +.++. +.+.+.+++.+++..|++-+..-
T Consensus 113 t~PdLYp~lveln~V~slL~LLgHeNtDI--~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdE 190 (536)
T KOG2734|consen 113 TMPDLYPILVELNAVQSLLELLGHENTDI--AIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDE 190 (536)
T ss_pred cChHHHHHHHHhccHHHHHHHhcCCCchh--HHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhh
Confidence 45777778999999999999999886675 456777777777421 11111 14567889999999999988543
Q ss_pred ----ChhHHHHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 016423 308 ----DLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEEDQRDYAMDVEA 368 (390)
Q Consensus 308 ----d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~el~~~e~~~ey~~dl~~ 368 (390)
+.+-...++..+.+++...+..++..... |+ .=+|.+ +..-++++--+.||.+|-+
T Consensus 191 svkeea~gv~~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~r----l~~k~~f~aNk~YasEiLa 251 (536)
T KOG2734|consen 191 SVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKR----LKGKAAFDANKQYASEILA 251 (536)
T ss_pred cchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHH----HhcccCcchhHHHHHHHHH
Confidence 45667788999999998877655554433 54 333343 3444455557888888743
No 135
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=89.48 E-value=9.5 Score=43.34 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=76.9
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
.+..+..|.-.+.|||.++-+||.. .+|+|=..+.++....|.-++.|+--.+...|+..+.... .-+.-.
T Consensus 942 E~~eegtR~vvAECLGkL~l~epes--------LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~f 1012 (1233)
T KOG1824|consen 942 ECAEEGTRNVVAECLGKLVLIEPES--------LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDF 1012 (1233)
T ss_pred ccchhhhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHH
Confidence 4466778999999999999999953 6889888888888778888888888888888887776543 344555
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..+++++ |..+|+-|+..+.+.+.
T Consensus 1013 l~~~~dp--Dl~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 1013 LKLLRDP--DLEVRRVALVVLNSAAH 1036 (1233)
T ss_pred HHHHhCC--chhHHHHHHHHHHHHHc
Confidence 6677876 88999999999988885
No 136
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.32 E-value=0.62 Score=29.99 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=25.6
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 296 FLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 296 ~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+++.+.++++.++..+|..|+.+|+.|++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999986
No 137
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.30 E-value=24 Score=35.90 Aligned_cols=96 Identities=14% Similarity=0.204 Sum_probs=62.0
Q ss_pred HHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHH-HHHHHHHHHHHHh
Q 016423 154 LQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE-EAVKALYTVSSLI 232 (390)
Q Consensus 154 Ld~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~-vr~kAL~ALSsLi 232 (390)
-|+++|+++.|. .+....+|..++--|++-+++ |..+..|..+|...++++.+...... .-.-++.++--++
T Consensus 20 ~Dev~ylld~l~------~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l 92 (361)
T PF07814_consen 20 ADEVEYLLDGLE------SSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVL 92 (361)
T ss_pred HHHHHHHHhhcc------cCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 477777777764 344567888888888888774 88888999999999999999654432 2222222333333
Q ss_pred hCCccchHHHHHcCcHHHHHHHhc
Q 016423 233 RNNLAGQEMFYVEAGDLMLQDILG 256 (390)
Q Consensus 233 R~~~~a~~~f~~~gGl~~L~~lL~ 256 (390)
....+....+...+-..++..++.
T Consensus 93 ~~d~~~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 93 SRDGLNMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred ccCCcchhhhhchhHHHHHHHHhc
Confidence 333344444445555666677766
No 138
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=89.23 E-value=2.9 Score=43.81 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=89.9
Q ss_pred HHHHHHhhCCccchHHHHHcCcHHHHHHHh--------cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCch
Q 016423 226 YTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--------GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 297 (390)
Q Consensus 226 ~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL--------~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v 297 (390)
-+|--+-|+ +.+...++...|+..|...- .....+..+.+.|+.+|+|++. .++..+..+.+.|..
T Consensus 3 ~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf-----~s~~aR~~~~~~~~~ 76 (446)
T PF10165_consen 3 ETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALF-----LSPSARQIFVDLGLA 76 (446)
T ss_pred HHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHh-----CCHHHHHHHHHcCcH
Confidence 344445555 44555666666666666654 1122477899999999999995 577888999999999
Q ss_pred HHHHHhhcCC-----ChhHHHHHHHHHHHHHhcChhHHHHHHhh-CCcHHHHHHHHHHHHHhhh
Q 016423 298 KSVVDLTASA-----DLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVML 355 (390)
Q Consensus 298 ~~Lv~lL~~~-----d~~v~EkAL~aL~~L~~~~~~~r~~~~~~-~gL~~~L~~Lr~~l~el~~ 355 (390)
+.++..|+.. +.++.=-.++.|.-+....++.+..+... .|++-....|...++....
T Consensus 77 ~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~ 140 (446)
T PF10165_consen 77 EKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSK 140 (446)
T ss_pred HHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 9999999876 67888888888887777777788777766 4556667777777765443
No 139
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.77 E-value=7.4 Score=44.12 Aligned_cols=134 Identities=10% Similarity=-0.057 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHhhc------CCCHHH--HHHHHHHHHHHh---hCCccchHHHHHcCc
Q 016423 180 KISAWILGKASQNN-PLVQKQVLELGALSKLMKMVK------SSFVEE--AVKALYTVSSLI---RNNLAGQEMFYVEAG 247 (390)
Q Consensus 180 ~~Aa~vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~------s~~~~v--r~kAL~ALSsLi---R~~~~a~~~f~~~gG 247 (390)
.+|..++-+++.-- +.. =.|.++-++++|. .+...- +.-|+.++|+++ ....+-... .+.=-
T Consensus 390 ~Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~fl 463 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFL 463 (1010)
T ss_pred HHHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHH
Confidence 46777777775442 111 1246777777776 222222 335677766665 333331122 12222
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc-CCChhHHHHHHHHHHHHHhcC
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+.+...++++ ---+|.||||.++.++. .++...-.-..+.+.+.++|. +.+..|+-.|+-||..+....
T Consensus 464 v~hVfP~f~s~--~g~Lrarac~vl~~~~~-------~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~ 534 (1010)
T KOG1991|consen 464 VNHVFPEFQSP--YGYLRARACWVLSQFSS-------IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQ 534 (1010)
T ss_pred HHHhhHhhcCc--hhHHHHHHHHHHHHHHh-------ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence 34455556776 34599999999999984 333333344566777788887 668899999999999999865
Q ss_pred hh
Q 016423 327 TT 328 (390)
Q Consensus 327 ~~ 328 (390)
+.
T Consensus 535 ~~ 536 (1010)
T KOG1991|consen 535 EQ 536 (1010)
T ss_pred hh
Confidence 43
No 140
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=88.54 E-value=5.7 Score=35.02 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHH
Q 016423 222 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 301 (390)
Q Consensus 222 ~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 301 (390)
-..+-.|+=+|+..+.+.. .++..|..-|+++ +++++..|+.+|-.++. +-.+.+...+.+.+++..++
T Consensus 19 w~~ileicD~In~~~~~~k-----~a~rai~krl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 19 WEAIQAFCEQINKEPEGPQ-----LAVRLLAHKIQSP--QEKEALQALTVLEACMK----NCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred HHHHHHHHHHHHcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHHhHHHHHHHH
Confidence 3556677778876554422 3456677778876 67789999999999986 45667778888999999999
Q ss_pred HhhcC------CChhHHHHHHHHHHHHHh
Q 016423 302 DLTAS------ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 302 ~lL~~------~d~~v~EkAL~aL~~L~~ 324 (390)
.+++. .+..|+++++..+.+-..
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99963 478999999988877664
No 141
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.14 E-value=50 Score=37.08 Aligned_cols=85 Identities=18% Similarity=0.151 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhccccccc--------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHH
Q 016423 151 QRALQELLILVEPIDNAN--------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV 222 (390)
Q Consensus 151 ~~aLd~Le~lve~IDnAn--------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~ 222 (390)
-.||..|...|.+=.+|- .||+.+++.||.+|...+-.++-.+ .+.. .+..|+..|.+.++.++.
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~-Nv~~------mv~eLl~fL~~~d~~~k~ 403 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES-NVRV------MVKELLEFLESSDEDFKA 403 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc-cHHH------HHHHHHHHHHhccHHHHH
Confidence 345555666665555553 7999999999999999998886543 2333 467788888887778888
Q ss_pred HHHHHHHHHhhCCccchHHH
Q 016423 223 KALYTVSSLIRNNLAGQEMF 242 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f 242 (390)
...+-|.-++-.|.|....|
T Consensus 404 ~~as~I~~laEkfaP~k~W~ 423 (866)
T KOG1062|consen 404 DIASKIAELAEKFAPDKRWH 423 (866)
T ss_pred HHHHHHHHHHHhcCCcchhH
Confidence 88888888888877764433
No 142
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=87.95 E-value=1.5 Score=46.13 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=71.3
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh---CCccchHHHH-HcCc
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR---NNLAGQEMFY-VEAG 247 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR---~~~~a~~~f~-~~gG 247 (390)
.|++.-++..|...++..+=...--|+..+-.++....+..+.+..-.+|.|+.|++|++.- .+-|+.+-|. ..-|
T Consensus 401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 45566688999999998887766667766666778888888877666789999999998643 2333322222 2223
Q ss_pred HH---HHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DL---MLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~---~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.- .+......+....|++.+|+..|.++++
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 22 2222222333467899999999999986
No 143
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.91 E-value=19 Score=39.85 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhhccccccc-------ccCCC--CChHHHHHHHHHHHHHhhCChH
Q 016423 127 PSDAQLIQIAIDDLNNSTLSLEDS--QRALQELLILVEPIDNAN-------GQLNH--PDTDIRKISAWILGKASQNNPL 195 (390)
Q Consensus 127 ~~d~~~Mk~~l~~l~~~~~s~e~~--~~aLd~Le~lve~IDnAn-------~lL~s--~~~~vR~~Aa~vLgta~QNNp~ 195 (390)
..-.++||..+..+.+.-.+-+.. .-||.-+ --|-.-|++- ++|-| ..+-||..||-|+=.+-.++|.
T Consensus 103 n~n~dl~klvin~iknDL~srn~~fv~LAL~~I-~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD 181 (938)
T KOG1077|consen 103 NENSDLMKLVINSIKNDLSSRNPTFVCLALHCI-ANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD 181 (938)
T ss_pred hcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHH-HhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc
Confidence 345789999998888765443322 2233221 1122234433 67754 3456999999999999999997
Q ss_pred HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCC-----------ChhHHH
Q 016423 196 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----------SFEIRL 264 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~-----------~~d~kl 264 (390)
.+. ..++..+++.||++....|...+..-|-+|+..+|+.+.--+ .-.+..|..+.... -+.+=+
T Consensus 182 l~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~-~~avs~L~riv~~~~t~~qdYTyy~vP~PWL 257 (938)
T KOG1077|consen 182 LVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL-PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWL 257 (938)
T ss_pred ccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH-HHHHHHHHHHHhhcccchhhceeecCCChHH
Confidence 655 357899999999987766666777778888888777644322 11222222222111 124567
Q ss_pred HHHHHHHHHHH
Q 016423 265 HRKAVSLVGDL 275 (390)
Q Consensus 265 r~KA~~LLs~L 275 (390)
+.|.+.+|.++
T Consensus 258 ~vKl~rlLq~~ 268 (938)
T KOG1077|consen 258 QVKLLRLLQIY 268 (938)
T ss_pred HHHHHHHHHhC
Confidence 77777777665
No 144
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=87.83 E-value=2.5 Score=34.98 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHH
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 300 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~L 300 (390)
|..++.+|++..-..+...... -..-++++..++.++ +.++|--||-.|++++.. ...+..+. -..+...|
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~----~~~~~l~~--f~~IF~~L 73 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQ--DSRVRYYACEALYNISKV----ARGEILPY--FNEIFDAL 73 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHH----HHHHHHHH--HHHHHHHH
Confidence 5567888888877655553333 245678888888886 899999999999999852 11222221 24566777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHH
Q 016423 301 VDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 301 v~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..++..+|.+|+..| ..|..|+
T Consensus 74 ~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 74 CKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHcCCchhHHHHH-HHHHHHh
Confidence 777777787877766 4444444
No 145
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=87.69 E-value=1.6 Score=39.16 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=61.5
Q ss_pred HHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCC---------CHHHHHHHHHHHHHHhhCCccchHHHHH-cCcHHHHHHH
Q 016423 186 LGKASQNN-PLVQKQVLELGALSKLMKMVKSS---------FVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDI 254 (390)
Q Consensus 186 Lgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~---------~~~vr~kAL~ALSsLiR~~~~a~~~f~~-~gGl~~L~~l 254 (390)
|...-.++ ...=+.|++.||+..|+.+|..- .......++.+|-+++. +..|...+.. .+++..|..+
T Consensus 88 L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~~i~~~ 166 (187)
T PF06371_consen 88 LRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVNLIALS 166 (187)
T ss_dssp HHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHHHHHHT
T ss_pred HHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHHHHHHH
Confidence 33333443 44566799999999999998521 12456678888887764 4577777665 5678999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHh
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~ 276 (390)
|.++ ++++|.-|+-+|+.+|
T Consensus 167 L~s~--~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 167 LDSP--NIKTRKLALEILAALC 186 (187)
T ss_dssp --TT--SHHHHHHHHHHHHHHH
T ss_pred HCCC--CHHHHHHHHHHHHHHH
Confidence 9986 6889999999998886
No 146
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.53 E-value=8.6 Score=42.46 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=98.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+....+-+++...---+.+-++.+|.-+. ++++.+++=..++++..|..|+..++++- - ..+. ..-..
T Consensus 57 ~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l~-v-----~~i~-ey~~~ 124 (734)
T KOG1061|consen 57 CMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCLR-V-----DKIT-EYLCD 124 (734)
T ss_pred hcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeEe-e-----hHHH-HHHHH
Confidence 33445677777777888888888885443 45666666666667788999988877762 1 1111 22356
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+|..++.++ ++.+|+.++..+..|-. ...+.+.+.|++..|-.++...++.+.-.|+.+|..+....
T Consensus 125 Pl~~~l~d~--~~yvRktaa~~vakl~~--------~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 125 PLLKCLKDD--DPYVRKTAAVCVAKLFD--------IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHhccCC--ChhHHHHHHHHHHHhhc--------CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 888888886 67788888888887752 23445678999999999999889999999999999998754
No 147
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=86.79 E-value=5.4 Score=34.51 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHH
Q 016423 222 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 301 (390)
Q Consensus 222 ~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 301 (390)
-..+..|+-+|+..+.+... .+..|..-|+++ ++.++..|+.+|-.++. +..+.+...+.+..++..++
T Consensus 18 ~~~il~icd~I~~~~~~~k~-----a~raL~krl~~~--n~~vql~AL~lLd~~vk----Ncg~~f~~~i~s~~fl~~l~ 86 (133)
T cd03561 18 WALNLELCDLINLKPNGPKE-----AARAIRKKIKYG--NPHVQLLALTLLELLVK----NCGKPFHLQVADKEFLLELV 86 (133)
T ss_pred HHHHHHHHHHHhCCCCCHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hCChHHHHHHhhHHHHHHHH
Confidence 45677888899887544333 345777778876 67899999999999986 44555777777878888899
Q ss_pred HhhcC---CChhHHHHHHHHHHHHHh
Q 016423 302 DLTAS---ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 302 ~lL~~---~d~~v~EkAL~aL~~L~~ 324 (390)
.++.. .+..++++++..+.+...
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99975 488999999998888775
No 148
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.49 E-value=34 Score=38.02 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC
Q 016423 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN 193 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN 193 (390)
|+.-.++|-.++-.-++-++|..+-.++=-..=+|..-.+|..|-+ -|..+++.|+.+|..||+.++.-|
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E----------kLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE----------KLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH----------hccCCCchHHHHHHHHHHHHHhhC
Confidence 4444555555543334455554443333222222333333444333 345688899999999999998888
Q ss_pred hHH
Q 016423 194 PLV 196 (390)
Q Consensus 194 p~~ 196 (390)
|+.
T Consensus 213 Pkn 215 (877)
T KOG1059|consen 213 PQN 215 (877)
T ss_pred Ccc
Confidence 863
No 149
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.41 E-value=6.4 Score=39.42 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=84.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHH--HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~--~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
+..|+.++.+.++.||..|+--+.+++.. +. +.|. ..--++.+.+++... +. -.-|++.+-++..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~-~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq------ 71 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GL-QSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQ------ 71 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--ch-hhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHh------
Confidence 45688899998899999999999998876 32 3332 223455566666654 22 5578999999984
Q ss_pred CCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
++..++.+.+. +++.++..+..+....-+.....|.+|++....++..+.
T Consensus 72 ~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~ 121 (353)
T KOG2973|consen 72 KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLT 121 (353)
T ss_pred hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHH
Confidence 66777777777 899999999888778888888888999887655555443
No 150
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=86.41 E-value=54 Score=35.72 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=94.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.-|.++.+.+-..|+.+||.++.=. |..+= -|.+..++.....+. ..++..++.++|.+|-.-.| +......|
T Consensus 101 ~aL~s~epr~~~~Aaql~aaIA~~Elp~~~w----p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN 175 (858)
T COG5215 101 RALKSPEPRFCTMAAQLLAAIARMELPNSLW----PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSN 175 (858)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHhhCccccc----hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhh
Confidence 5678999999999999999886431 10000 134455555555543 45788999999999988655 22222233
Q ss_pred --cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 247 --GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 247 --Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
-+.+....++.. ++..+|.-|+..|.+=+... ...+...-..+=+++.+++.-+.+|..++-+|..||.-|..
T Consensus 176 ~il~aiv~ga~k~e-t~~avRLaaL~aL~dsl~fv----~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~ 250 (858)
T COG5215 176 VILFAIVMGALKNE-TTSAVRLAALKALMDSLMFV----QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMM 250 (858)
T ss_pred HHHHHHHHhhcccC-chHHHHHHHHHHHHHHHHHH----HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHH
Confidence 234555555544 57788889998888833221 01111111122344556677788899999999999999987
Q ss_pred cC
Q 016423 325 LR 326 (390)
Q Consensus 325 ~~ 326 (390)
..
T Consensus 251 Ly 252 (858)
T COG5215 251 LY 252 (858)
T ss_pred HH
Confidence 53
No 151
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=86.26 E-value=17 Score=30.28 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcH
Q 016423 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGAL 206 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l 206 (390)
.+...|.+....+++......+-.. .|.. -|.+.++.+.-.|..+|=.+++| ++.++..+.....+
T Consensus 16 p~~~~i~~i~d~~~~~~~~~~~~~~---~l~k----------Rl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~ 82 (115)
T cd00197 16 PDWPLIMEICDLINETNVGPKEAVD---AIKK----------RINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFA 82 (115)
T ss_pred CCHHHHHHHHHHHHCCCccHHHHHH---HHHH----------HhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHH
Confidence 3456777777777655333333332 2222 24567899999999999999999 57888888888777
Q ss_pred HHHHHhhcC------CCHHHHHHHHHHHHHH
Q 016423 207 SKLMKMVKS------SFVEEAVKALYTVSSL 231 (390)
Q Consensus 207 ~~Ll~LL~s------~~~~vr~kAL~ALSsL 231 (390)
..+++.... .+..||.|+++.+...
T Consensus 83 ~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 83 VELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 777664211 1357899998877643
No 152
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.88 E-value=6.5 Score=35.38 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=71.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHHhhcCCC-HHHHHHHHHHHHH---HhhCCccchHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSF-VEEAVKALYTVSS---LIRNNLAGQEMF 242 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~LL~s~~-~~vr~kAL~ALSs---LiR~~~~a~~~f 242 (390)
.+|+++++.-|+.++.+++..+++++. +.+.++ -++..|+.+|...+ ..+..-|+.+++. .++++|.-..++
T Consensus 32 ~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei 109 (165)
T PF08167_consen 32 SLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREI 109 (165)
T ss_pred HHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 588999999999999999999999842 445454 47899999998755 3455555555555 467788777776
Q ss_pred HHcCcH---HHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 243 YVEAGD---LMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 243 ~~~gGl---~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
...+.- +.+..++++ ......++.+|..++.
T Consensus 110 ~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 110 ATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP 143 (165)
T ss_pred hhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence 654433 333333332 2345678888888875
No 153
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=85.46 E-value=8.9 Score=44.21 Aligned_cols=138 Identities=11% Similarity=0.009 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhc----CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 178 IRKISAWILGKASQNNPLVQKQVLEL----GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 178 vR~~Aa~vLgta~QNNp~~Q~~~le~----g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
--..+..+|.+++.-||.....|-.. |-++.+..++.... ..++.-|+..++ ++..|.++.......|-+..|.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~-~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVIL-LATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHH-HHhcccHHHHHHHhhhHHHHHH
Confidence 44568999999999999665544332 67888888886544 346666776665 4567788999998889899999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhc
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~ 325 (390)
.+|.+. +..|..++-.|+.|.+ .+.+.....++|.+..+..++... +.+.+-.|...+.-|..+
T Consensus 1820 ~lLHS~---PS~R~~vL~vLYAL~S------~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1820 TLLHSQ---PSMRARVLDVLYALSS------NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHhcC---hHHHHHHHHHHHHHhc------CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 999975 5579999999999985 667777778888888888888665 667888888888877764
No 154
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=85.42 E-value=4.1 Score=33.38 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=53.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+...+..+.++..++|..++.-|+.+++.+. .......+.+.++...|+++ |..+--+|+..+..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~--DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE--DSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHH
Confidence 4566777887778899999999999999987 22222345677888888876 77788899999999985
No 155
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=85.41 E-value=34 Score=36.95 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=94.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.-|+.+.+.+|.....|+..++-+-. ..-. .-.++.+.+++++.+...+.+|.|++..+++++.- ..+.+.+-+
T Consensus 103 ~~~~tps~~~q~~~~~~l~~~~~~~~---~~~~-~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l 176 (569)
T KOG1242|consen 103 EELDTPSKSVQRAVSTCLPPLVVLSK---GLSG-EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFL 176 (569)
T ss_pred HhcCCCcHHHHHHHHHHhhhHHHHhh---ccCH-HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHH
Confidence 34567888899888888888755421 1111 12577888889877778899999999999998654 566777888
Q ss_pred HHHHHHhcCCChhHHHHHH-HHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc---CCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRK-AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---SADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~K-A~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---~~d~~v~EkAL~aL~~L~~ 324 (390)
..|...+++.+ ...++. +.+....++. +-++ ..+-.+++.+..+|. .....+|+.|..++.++..
T Consensus 177 ~~l~~ai~dk~--~~~~re~~~~a~~~~~~----~Lg~-----~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 177 DNLSKAIIDKK--SALNREAALLAFEAAQG----NLGP-----PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred HHHHHHhcccc--hhhcHHHHHHHHHHHHH----hcCC-----CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 88999888763 334554 4444444432 1232 234455555555554 4467999999999988886
Q ss_pred c
Q 016423 325 L 325 (390)
Q Consensus 325 ~ 325 (390)
.
T Consensus 246 ~ 246 (569)
T KOG1242|consen 246 C 246 (569)
T ss_pred h
Confidence 4
No 156
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=85.27 E-value=21 Score=36.36 Aligned_cols=199 Identities=13% Similarity=0.097 Sum_probs=118.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChH
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPL 195 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~ 195 (390)
.++-.++-+++ +|-++-|.+++.+..-...++-....|+. ++.++..-- ++--..++-+|.+....|-.+.+-.|.
T Consensus 129 ilklildcIgg-eddeVAkAAiesikrialfpaaleaiFeS--ellDdlhlr-nlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 129 ILKLILDCIGG-EDDEVAKAAIESIKRIALFPAALEAIFES--ELLDDLHLR-NLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred HHHHHHHHHcC-CcHHHHHHHHHHHHHHHhcHHHHHHhccc--ccCChHHHh-HHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 34444444444 34556666666666544444333332221 011111000 111234566888899999999999999
Q ss_pred HHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 016423 196 VQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 274 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~ 274 (390)
+-..+-+.|.+..|..=++... .-|+..++--.-.|..-+. +.+.+-..|-+..|..++...++++.-+-++..-...
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 9999999999998888887643 3456666665555543321 2223334556788888887554566666677766666
Q ss_pred HhhhhhhcCCCCCchhhhhcCchHHH-------HHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 275 LAKCQLENMHKVEPPLFRDRFFLKSV-------VDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 275 L~~~~l~~~~~~~~~~l~~~g~v~~L-------v~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+.. .... -.+.+.-+|+.+ .+++...|++.++.|..+|+.|-+..
T Consensus 284 ffg------keai-mdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 284 FFG------KEAI-MDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred Hhc------chHH-hhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 653 1111 112233334433 45557789999999999999987653
No 157
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=84.87 E-value=9.6 Score=37.38 Aligned_cols=112 Identities=17% Similarity=0.048 Sum_probs=78.9
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 204 GALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 204 g~l~~Ll-~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
+.+..|+ .-+.+.+..+|..|+-+++-.+=-++..... .+..+...++.+ +..++..|+..|.+++...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~--- 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKD--DEEVKITALKALFDLLLTH--- 95 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc---
Confidence 4555555 5667777889999988888765544432222 246777778554 6679999999999999742
Q ss_pred CCCCCc-------hhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 283 MHKVEP-------PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 283 ~~~~~~-------~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+.... ...-...+.+.+...|.+.+.+++..|...+.-|.-.+
T Consensus 96 -g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 96 -GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred -CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 11111 12334678888899999999999999999998887654
No 158
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=84.19 E-value=24 Score=38.15 Aligned_cols=108 Identities=8% Similarity=0.128 Sum_probs=73.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-ccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~-~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
.+|.++.-+.+-.+.||..|..|+-++.|.. +.+.+.|.- +.|..++.. .=+-+.-++.++..|.. .
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llp----sll~~l~~~---kWrtK~aslellg~m~~-----~ 284 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLP----SLLGSLLEA---KWRTKMASLELLGAMAD-----C 284 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhh----hhHHHHHHH---hhhhHHHHHHHHHHHHH-----h
Confidence 4556666665556789999999999999984 445556542 222222222 23456778899998874 2
Q ss_pred CCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.+... .+.-..+++.+.+.|..+++.+++.+..||..+...
T Consensus 285 ap~qL-s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 285 APKQL-SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred chHHH-HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 23222 244568899999999999999999998888877653
No 159
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.66 E-value=50 Score=35.14 Aligned_cols=102 Identities=18% Similarity=0.250 Sum_probs=59.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
..+++..+|..||.+||+.+..-|. .+..+ -.+..++.-|.++ +.+|.-.|+.+|-.++-.-..-.-.++-.+.
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~i 343 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNI 343 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhH
Confidence 3568889999999999999999552 22333 2345555555544 3456544444444433221111111222233
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.--+..++.+. +.++|..|.+++..|..
T Consensus 344 alrlR~l~~se--~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 344 ALRLRTLFDSE--DDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHHHHHHhc--ChhhhhhHHHHHHHHHH
Confidence 34456666665 56789999999999985
No 160
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=83.14 E-value=8.3 Score=32.07 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHH-hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh
Q 016423 177 DIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 255 (390)
Q Consensus 177 ~vR~~Aa~vLgta~QNNp~~Q~~~l-e~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL 255 (390)
+||.+|..=|-+=..++--+-..+. +.+.+..|+.-++.++.+....++.-|+.++++ |++...+...|+...|.++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHH
Confidence 5777776655555455544444444 446788888888888777788899889998876 88888889999999977765
Q ss_pred cCCChhHHHHHHHHHH
Q 016423 256 GNSSFEIRLHRKAVSL 271 (390)
Q Consensus 256 ~s~~~d~klr~KA~~L 271 (390)
..- ++.++...--+
T Consensus 81 ~~~--~~~~~~~id~i 94 (98)
T PF14726_consen 81 PNV--EPNLQAEIDEI 94 (98)
T ss_pred hcC--CHHHHHHHHHH
Confidence 432 45455554433
No 161
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=82.26 E-value=8.9 Score=33.26 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHH
Q 016423 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 302 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 302 (390)
..+-.|+-+|+..+.+.... +..|..=|.++ ++.++..|+.+|-.++. +..+.+...+.+.+++..|+.
T Consensus 19 ~~~l~icD~i~~~~~~~k~a-----~r~l~krl~~~--n~~v~l~AL~lLe~~vk----Ncg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 19 ELILEICDLINSTPDGPKDA-----VRLLKKRLNNK--NPHVALLALTLLDACVK----NCGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred HHHHHHHHHHhCCCccHHHH-----HHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHHhHHHHHHHHH
Confidence 44556788888775544333 34577777776 67899999999999996 345667777888999999999
Q ss_pred hhcCC-Chh-HHHHHHHHHHHHHh
Q 016423 303 LTASA-DLD-LQEKALAAIKNLLQ 324 (390)
Q Consensus 303 lL~~~-d~~-v~EkAL~aL~~L~~ 324 (390)
++... +.. ++++++..+.+-..
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHH
Confidence 99876 334 99999988877664
No 162
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.17 E-value=8.4 Score=33.96 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=75.9
Q ss_pred HHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 207 SKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 207 ~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
..+|.-..++.. +.--...-.|+-+|+..+.+.. ..+..|..=|.++ ++.++..|+.+|-.++. +.+.
T Consensus 6 ~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k-----~a~ral~krl~~~--n~~vql~AL~LLe~~vk----NCG~ 74 (142)
T cd03569 6 DELIEKATSELLGEPDLASILEICDMIRSKDVQPK-----YAMRALKKRLLSK--NPNVQLYALLLLESCVK----NCGT 74 (142)
T ss_pred HHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----HCCH
Confidence 334444444321 2233556668888887654422 3456777777775 67899999999999986 3456
Q ss_pred CCchhhhhcCchHHHHHhhcC-CChhHHHHHHHHHHHHHh
Q 016423 286 VEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~~L~~ 324 (390)
.+...+.+.+++..++.++.. .+..|+++++..+.+-..
T Consensus 75 ~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 75 HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 677778899999999999974 588999999988887664
No 163
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.04 E-value=13 Score=39.34 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
|+.+|-..+....|..+.-++.+.++.......+-..||.. -|++.++.++..|..+|-+|+.| ..
T Consensus 5 ~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkK-------------Ri~~k~s~vq~lALtlLE~cvkNCG~ 71 (470)
T KOG1087|consen 5 LIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKK-------------RLNSKNSKVQLLALTLLETCVKNCGY 71 (470)
T ss_pred HHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHH-------------HhccCCcHHHHHHHHHHHHHHHhhhH
Confidence 44555444444456777777777777655444444444433 35777779999999999999999 56
Q ss_pred HHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHH
Q 016423 195 LVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSS 230 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSs 230 (390)
.+...|.+.++++.++++.+.. +..||.|+|..|=.
T Consensus 72 ~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 72 SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 6677899999999999999876 35789999877755
No 164
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=81.16 E-value=7.3 Score=39.02 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHhcC--cHHHHHHhhcCCC---HHHHHHHHHHHHHHhhCCccchHHH
Q 016423 177 DIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQEMF 242 (390)
Q Consensus 177 ~vR~~Aa~vLgta~QNNp~~Q~~~le~g--~l~~Ll~LL~s~~---~~vr~kAL~ALSsLiR~~~~a~~~f 242 (390)
.+|-.|..++..+ ..++..+..+++.+ .+..|+.++..+. ..++..|+++|.+++++.+-..+-.
T Consensus 237 ~iRllAi~~l~~~-~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYI-HPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhh-CCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3555566666555 56788999999998 9999999998764 4689999999999999876655533
No 165
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=81.03 E-value=60 Score=32.02 Aligned_cols=152 Identities=15% Similarity=0.123 Sum_probs=81.8
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh------h---------CCc
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI------R---------NNL 236 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLi------R---------~~~ 236 (390)
.+..+-||-.|+.++|... .| ..++.|-++.++...+|+.-+..||--+- . .+|
T Consensus 79 esq~pmvRhEAaealga~~--~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdP 147 (289)
T KOG0567|consen 79 ESQEPMVRHEAAEALGAIG--DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDP 147 (289)
T ss_pred cccchHHHHHHHHHHHhhc--ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCC
Confidence 5677889999999999985 22 23444445553333444443333333221 1 111
Q ss_pred cchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh----hhcC--CC-CC--------chhhhhcCchHHHH
Q 016423 237 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----LENM--HK-VE--------PPLFRDRFFLKSVV 301 (390)
Q Consensus 237 ~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~----l~~~--~~-~~--------~~~l~~~g~v~~Lv 301 (390)
.+. ...+-+.-|...|.+.+-..--|.+|.|.|+++=.+. +-++ .+ .. .-.+...-.++.|.
T Consensus 148 a~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~ 224 (289)
T KOG0567|consen 148 APP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLI 224 (289)
T ss_pred CCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHH
Confidence 111 1122344445554433223334556777777762211 0000 01 00 01123455677787
Q ss_pred HhhcC--CChhHHHHHHHHHHHHHhcChhHHHHHHhhCCc
Q 016423 302 DLTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 339 (390)
Q Consensus 302 ~lL~~--~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL 339 (390)
..|.. .++-+|-.|+.||+.++. ++|...++...|-
T Consensus 225 k~L~d~~E~pMVRhEaAeALGaIa~--e~~~~vL~e~~~D 262 (289)
T KOG0567|consen 225 KVLLDETEHPMVRHEAAEALGAIAD--EDCVEVLKEYLGD 262 (289)
T ss_pred HHHHhhhcchHHHHHHHHHHHhhcC--HHHHHHHHHHcCC
Confidence 77754 378999999999999997 5788888765553
No 166
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.92 E-value=37 Score=37.68 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=56.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~ 236 (390)
++|++.++-+|..|+-+++.+-.-++ +.+...|.++.|-.++.++++.|...|+.|++.+.-.++
T Consensus 128 ~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 128 KCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 68899999999999999999977776 557788999999999997777888999999999877665
No 167
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=80.79 E-value=8.4 Score=43.51 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=87.1
Q ss_pred hCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHH-HcCcHHHHHHHhcCCChhHHHHHHHH
Q 016423 191 QNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAV 269 (390)
Q Consensus 191 QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~-~~gGl~~L~~lL~s~~~d~klr~KA~ 269 (390)
-+++-.++.|+. ..+|.|++...+.+...+..-+-|||..+.|-|. +...- -..-+++|.++|+-+ |+.+|..+.
T Consensus 855 ~~riLykQRfF~-~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl 930 (1030)
T KOG1967|consen 855 EPRILYKQRFFC-DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMP--DVIVRVSTL 930 (1030)
T ss_pred chhHHHHHHHHH-hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCC--ccchhhhHh
Confidence 344566777764 4699999999966667788889999999986554 22211 234578889999876 666788999
Q ss_pred HHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCC---hhHHHHHHHHHHHHHh
Q 016423 270 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD---LDLQEKALAAIKNLLQ 324 (390)
Q Consensus 270 ~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d---~~v~EkAL~aL~~L~~ 324 (390)
.+|..++.+ .+..... .-..+++.+..+=.+.| .-+|+.|+.||..|..
T Consensus 931 ~~i~~~l~~-----~~tL~t~-~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 931 RTIPMLLTE-----SETLQTE-HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred hhhhHHHHh-----ccccchH-HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 999998852 2222221 12345666666655554 5799999999999998
No 168
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.60 E-value=23 Score=37.15 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=107.9
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc----CCC-----HHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSF-----VEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~----s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
.+-...+..|..+++-+.||+-..+...-..+++..|++-+. .++ .+.-.....+|+|+++. |.+...|.
T Consensus 237 ~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl 315 (536)
T KOG2734|consen 237 AAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFL 315 (536)
T ss_pred cCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhh
Confidence 355667888999999999999889998888899999998874 221 13456888899999987 88899999
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC--CCchhhhhcCchHHHHHhhc----------CCChhH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK--VEPPLFRDRFFLKSVVDLTA----------SADLDL 311 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~--~~~~~l~~~g~v~~Lv~lL~----------~~d~~v 311 (390)
...|++...-.++.. ...+--|...|-+.+. +++ ..+..+++.+-++.+..++- ..-.+.
T Consensus 316 ~~EGlqLm~Lmlr~K---k~sr~SalkvLd~am~-----g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~ 387 (536)
T KOG2734|consen 316 KGEGLQLMNLMLREK---KVSRGSALKVLDHAMF-----GPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEH 387 (536)
T ss_pred ccccHHHHHHHHHHH---HHhhhhHHHHHHHHHh-----CCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHH
Confidence 999999888877764 2346667777877775 233 45667788777777776663 123477
Q ss_pred HHHHHHHHHHHHh
Q 016423 312 QEKALAAIKNLLQ 324 (390)
Q Consensus 312 ~EkAL~aL~~L~~ 324 (390)
-|++...|+++..
T Consensus 388 eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 388 EEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888875
No 169
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.36 E-value=16 Score=35.30 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCc---HHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCccchHHHH-HcCcHH
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGA---LSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDL 249 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~---l~~Ll~LL~s~~--~~vr~kAL~ALSsLiR~~~~a~~~f~-~~gGl~ 249 (390)
..=|...+-.|=.+.-.+|+.+..|++... +=+.+...++.+ .-+|..++..|+++++|..+-...|. ...-++
T Consensus 113 ~snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 113 ESNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred hhhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 344555455555555778999999998752 222333333333 34789999999999999777666665 456788
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC----chhhhh----cCchHHHHHhh-cCCChhHHHHHHHHHH
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE----PPLFRD----RFFLKSVVDLT-ASADLDLQEKALAAIK 320 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~----~~~l~~----~g~v~~Lv~lL-~~~d~~v~EkAL~aL~ 320 (390)
.+.+++... +.--+.-|+|.+.-++- +..- ++.+.. ..+...++..+ +.+...+..++++|-.
T Consensus 193 LcLrIme~g--SElSktvaifI~qkil~------dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYl 264 (315)
T COG5209 193 LCLRIMELG--SELSKTVAIFIFQKILG------DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYL 264 (315)
T ss_pred HHHHHHHhh--hHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHhe
Confidence 889988765 33346677888777762 2221 222211 23344444333 4456788888888877
Q ss_pred HHHhcChhHHHHHH
Q 016423 321 NLLQLRTTEALVLK 334 (390)
Q Consensus 321 ~L~~~~~~~r~~~~ 334 (390)
.|... +..|..++
T Consensus 265 RLsd~-p~aR~lL~ 277 (315)
T COG5209 265 RLSDK-PHARALLS 277 (315)
T ss_pred eecCC-HhHHHHHh
Confidence 76653 34555554
No 170
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=79.93 E-value=15 Score=30.54 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHH
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 300 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~L 300 (390)
-.+.+-.|+-+++.++.+... ....|..-|.++ +.+++.||+.+|-+++. +.++.+...+....++..+
T Consensus 17 ~~~~i~~i~d~~~~~~~~~~~-----~~~~l~kRl~~~--~~~~~lkaL~lLe~lvk----N~g~~f~~~i~~~~~~~~l 85 (115)
T cd00197 17 DWPLIMEICDLINETNVGPKE-----AVDAIKKRINNK--NPHVVLKALTLLEYCVK----NCGERFHQEVASNDFAVEL 85 (115)
T ss_pred CHHHHHHHHHHHHCCCccHHH-----HHHHHHHHhcCC--cHHHHHHHHHHHHHHHH----HccHHHHHHHHHhHHHHHH
Confidence 345666777777766443232 345677777765 78899999999999997 4666777777777777777
Q ss_pred HHhh-----c-CCChhHHHHHHHHHHHHH
Q 016423 301 VDLT-----A-SADLDLQEKALAAIKNLL 323 (390)
Q Consensus 301 v~lL-----~-~~d~~v~EkAL~aL~~L~ 323 (390)
+.+. . ..+..++++++..+...+
T Consensus 86 ~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 86 LKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 6531 1 126789999988776654
No 171
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=79.64 E-value=9.2 Score=34.13 Aligned_cols=135 Identities=13% Similarity=0.195 Sum_probs=87.8
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc-HHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG-DLM 250 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~-LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG-l~~ 250 (390)
...+++|..|.-+++..- ...++.+.+ .+...+. ++......-...++.+++++.-..|.....++...| .+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~ 90 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES 90 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred CCCHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence 457789999999999884 445555544 2333333 333222235778999999998887776666654444 678
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-Chh-HHHHHHHHH
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD-LQEKALAAI 319 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~-v~EkAL~aL 319 (390)
+.........+..++.-++-+|+.=+. .+.+..++....++.|-++++.. |.. ++..|+-.|
T Consensus 91 l~~~~~~~~~~~~~~~~~lell~aAc~-------d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 91 LLPLASRKSKDRKVQKAALELLSAACI-------DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHHH-CTS-HHHHHHHHHHHHHHTT-------SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 888877222377889999999988773 33444555667788888888654 444 566665444
No 172
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=79.43 E-value=26 Score=34.24 Aligned_cols=130 Identities=14% Similarity=0.083 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcC---CChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcC
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN---SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 295 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s---~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g 295 (390)
.-|+.-..+|=-.+-.||.....|..+.---.|..+|.. +++...+|.-++..|..|+. +.+.+....+...+
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk----~dd~eVi~fLl~Te 168 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVK----NDDQEVIRFLLTTE 168 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHh----cCcHHHHHHHHHhh
Confidence 457755555555566779999999999987777777752 23578899999999999996 34556778889999
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHHhcCh---hHHHHHHhhCCcHHHHHHHHHHHHH
Q 016423 296 FLKSVVDLTASADLDLQEKALAAIKNLLQLRT---TEALVLKDFCGLDTALERLRQQLQE 352 (390)
Q Consensus 296 ~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~---~~r~~~~~~~gL~~~L~~Lr~~l~e 352 (390)
+|+..+..+.....-.+.-|...+.-++.+.. .+.+.+.++..+...|..+-.++-+
T Consensus 169 IVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~ 228 (293)
T KOG3036|consen 169 IVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS 228 (293)
T ss_pred hHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999887888888888888776422 2445555577777777777666654
No 173
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=79.41 E-value=33 Score=34.31 Aligned_cols=154 Identities=10% Similarity=0.048 Sum_probs=103.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhh-CChHHHHHHHhc-Cc-HHHHHHhhcCC-----C--------HHHHHHHH-HHHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQ-NNPLVQKQVLEL-GA-LSKLMKMVKSS-----F--------VEEAVKAL-YTVSSL 231 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~Q-NNp~~Q~~~le~-g~-l~~Ll~LL~s~-----~--------~~vr~kAL-~ALSsL 231 (390)
+.|++..+.+...+..++..++. ++...-..++.. +. ++.|-+++... . ..+|...+ ++||-+
T Consensus 63 r~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl 142 (330)
T PF11707_consen 63 RSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFL 142 (330)
T ss_pred HHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHH
Confidence 57888889999999999999999 887777777775 22 33444444211 1 16777655 455555
Q ss_pred hhCCccchHHHHHcCc-HHHHHHHhcCCChhHHHHHHHHHHHHH-HhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCCh
Q 016423 232 IRNNLAGQEMFYVEAG-DLMLQDILGNSSFEIRLHRKAVSLVGD-LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL 309 (390)
Q Consensus 232 iR~~~~a~~~f~~~gG-l~~L~~lL~s~~~d~klr~KA~~LLs~-L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~ 309 (390)
.-.++.....+...++ +..+.+-|..+ +..+....+..+.. ++.+. .-....+-.+....++..++.+...++.
T Consensus 143 ~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~--~v~r~~K~~~fn~~~L~~l~~Ly~~~~~ 218 (330)
T PF11707_consen 143 SSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDS--SVSRSTKCKLFNEWTLSQLASLYSRDGE 218 (330)
T ss_pred ccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCC--CCChhhhhhhcCHHHHHHHHHHhcccCC
Confidence 5556666777777766 56666666665 45566666666653 43210 1122345556778899999998888877
Q ss_pred ----hHHHHHHHHHHHHHhcC
Q 016423 310 ----DLQEKALAAIKNLLQLR 326 (390)
Q Consensus 310 ----~v~EkAL~aL~~L~~~~ 326 (390)
.+.+.+-..|..+.+..
T Consensus 219 ~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 219 DEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cccchHHHHHHHHHHHHhcCC
Confidence 89999988888888653
No 174
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.08 E-value=31 Score=38.26 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=64.8
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
...+++..||.+.|.+|+.+.-+|...-+.++. +...+|+.-+.+-.+.||..|+.|||-+=.. | .-.. .....
T Consensus 93 g~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~-~dee---~~v~n 166 (892)
T KOG2025|consen 93 GTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDREPNVRIQAVLALSRLQGD-P-KDEE---CPVVN 166 (892)
T ss_pred cccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhccCchHHHHHHHHHHHHhcC-C-CCCc---ccHHH
Confidence 345788899999999999998877655555554 4566666666655568999999999987432 1 1111 13345
Q ss_pred HHHHHhcCCChhHHHHHHHHHHH
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLV 272 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LL 272 (390)
.+..+++.+ ++..+|+-|+..|
T Consensus 167 ~l~~liqnD-pS~EVRRaaLsnI 188 (892)
T KOG2025|consen 167 LLKDLIQND-PSDEVRRAALSNI 188 (892)
T ss_pred HHHHHHhcC-CcHHHHHHHHHhh
Confidence 677777766 3566777665444
No 175
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=78.68 E-value=6.3 Score=34.89 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHH
Q 016423 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 302 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 302 (390)
..+-.|+-+|+..+.+.. ..+..|..=|.++ ++.++..|+.||-.++. +.+..+...+.+..++..|+.
T Consensus 19 ~~il~icD~I~~~~~~~k-----~a~ral~KRl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evask~Fl~eL~k 87 (144)
T cd03568 19 GLILDVCDKVKSDENGAK-----DCLKAIMKRLNHK--DPNVQLRALTLLDACAE----NCGKRFHQEVASRDFTQELKK 87 (144)
T ss_pred HHHHHHHHHHhcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHHH
Confidence 345556777776544332 2345677777765 67899999999999986 456667777888999999999
Q ss_pred hhcC-CChhHHHHHHHHHHHHHh
Q 016423 303 LTAS-ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 303 lL~~-~d~~v~EkAL~aL~~L~~ 324 (390)
++.. .+..|+++++..+.+...
T Consensus 88 l~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 88 LINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HhcccCCHHHHHHHHHHHHHHHH
Confidence 9988 699999999998888774
No 176
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=78.10 E-value=33 Score=37.02 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=89.7
Q ss_pred ChHHHHHHHhcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHH
Q 016423 193 NPLVQKQVLELGALSKLMKMVKSSFV----EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 268 (390)
Q Consensus 193 Np~~Q~~~le~g~l~~Ll~LL~s~~~----~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA 268 (390)
.|..-..|+.+.++..|.+++.+... ++....+.|+|.+.-|.--.-+. ....++--...+..-+..+..+-..|
T Consensus 113 d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~-~~~~fV~~~a~~V~~~~~~a~~~~~A 191 (713)
T KOG2999|consen 113 DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES-VSNDFVVSMASYVNAKREDANTLLAA 191 (713)
T ss_pred cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee-cccHHHHHHHHHHhhhhhcccchHHH
Confidence 35566678889899999999987643 46778899999988775433222 22333333333333222344455678
Q ss_pred HHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 269 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 269 ~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+.++-++.. .+......+.+.--+..|+..|...|..++-+|+..+.+|..-.
T Consensus 192 L~~LE~~vl-----~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 192 LQMLESLVL-----GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred HHHHHHHHh-----CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 888888874 45556777888899999999999999999999988888887543
No 177
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=77.85 E-value=18 Score=36.15 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=83.4
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhc-------C----cHHHHHHhhcCC-----CHHHHH-HHHHHHHHHhhCCc
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLEL-------G----ALSKLMKMVKSS-----FVEEAV-KALYTVSSLIRNNL 236 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-------g----~l~~Ll~LL~s~-----~~~vr~-kAL~ALSsLiR~~~ 236 (390)
..-++|.+|+.|+-.-+.+|+..|..|++. + ....|+.-|-+. .++.+. .|...++-++++++
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 356899999999999999999999999984 1 122344444311 134444 68888999999999
Q ss_pred cchHHHHHc------Cc------HHHHHHHhcC---CChhHHHHHHHHHHHHHHhhhhhhcCCCCCchh-hhhcCchHHH
Q 016423 237 AGQEMFYVE------AG------DLMLQDILGN---SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL-FRDRFFLKSV 300 (390)
Q Consensus 237 ~a~~~f~~~------gG------l~~L~~lL~s---~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~-l~~~g~v~~L 300 (390)
.+.+....- .| ++.+..+|.. ...+++++.=-+.||..-+. +++..... +-+..-++.|
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~-----e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLF-----ECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHT-----T-HHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHh-----CCHHHHHHHHcCcchHHHH
Confidence 987766432 22 3345555544 12467777777777777663 35544444 4455689999
Q ss_pred HHhhcC-CChhHHHHHH
Q 016423 301 VDLTAS-ADLDLQEKAL 316 (390)
Q Consensus 301 v~lL~~-~d~~v~EkAL 316 (390)
+..... ++.++.-+.|
T Consensus 205 i~~~~~~~~~~~~VqGL 221 (312)
T PF04869_consen 205 IEFSNQSSSEDVLVQGL 221 (312)
T ss_dssp HHHHS--TCCCHHHHHH
T ss_pred HHHhhcCCCCcchHHHH
Confidence 997533 3444444444
No 178
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=77.42 E-value=4.6 Score=33.06 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=50.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 237 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~ 237 (390)
..|+++.+.||..+...|..++..+. ....-..+++..++..|++++.=+=-.|+.+++.|+..+|.
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 35678889999999999999999976 11111235677788888887666777888888888887765
No 179
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.93 E-value=2.4 Score=43.16 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=53.4
Q ss_pred HHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 182 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 182 Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
-...||.+|.-||..|+.+.+.||++.++.--.-+ ++-.+...++|+-.|+.+|..+|+.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 56689999999999999999999999988876533 345789999999999999999988764
No 180
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=76.60 E-value=67 Score=32.48 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=78.0
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchH----HHHHcCcHHHHHHHhcCC-ChhHHHHHHHHHHHHH
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE----MFYVEAGDLMLQDILGNS-SFEIRLHRKAVSLVGD 274 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~----~f~~~gGl~~L~~lL~s~-~~d~klr~KA~~LLs~ 274 (390)
+...|.+..|+..|..=+-+.|..+..-.++++|....... .....+.-.+|..++..- +++ +-..+-.+|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d--ial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD--IALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT--THHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc--ccchHHHHHHH
Confidence 56678899999999876667888899999999998655421 122333344444444321 113 23344455555
Q ss_pred HhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 275 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 275 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+. ++.....+.....+..+......++.++..-|..++..|.+..
T Consensus 150 c~k------~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h 195 (335)
T PF08569_consen 150 CIK------HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH 195 (335)
T ss_dssp HTT------SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS
T ss_pred HHh------hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc
Confidence 542 4555667777888888999999999999999999999887643
No 181
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=76.59 E-value=3.3 Score=41.70 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=60.3
Q ss_pred chHHHHHcC--cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHH
Q 016423 238 GQEMFYVEA--GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKA 315 (390)
Q Consensus 238 a~~~f~~~g--Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkA 315 (390)
+.+.|.+.+ -+..|.++++++.++. ...-||.=|..++. ..|+....+.+.|+-..++++++++|++++-.|
T Consensus 346 N~d~l~kdny~i~k~L~~~lq~n~~nt-~i~vAc~Di~~~Vr-----~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeA 419 (432)
T COG5231 346 NLDMLIKDNYEIVKVLKKYLQSNNPNT-WICVACSDIFQLVR-----ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEA 419 (432)
T ss_pred hHHHHhhhhHHHHHHHHHHHhcCCCCc-eEeeeHhhHHHHHH-----hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHH
Confidence 344554433 4567777788764332 22235555666653 578889999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 016423 316 LAAIKNLLQ 324 (390)
Q Consensus 316 L~aL~~L~~ 324 (390)
+.|+..+.+
T Consensus 420 l~a~q~~i~ 428 (432)
T COG5231 420 LQALQTCIS 428 (432)
T ss_pred HHHHHHHHh
Confidence 999999876
No 182
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=76.12 E-value=19 Score=40.17 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=78.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCccch-HHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC
Q 016423 209 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE 287 (390)
Q Consensus 209 Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~-~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~ 287 (390)
.+..|++.+..+|..|+--+|++..=-..+. ++...+=| -+|.+-|... .+.+---.+.+|..++... +-...
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG-vvLyEylgee--ypEvLgsILgAikaI~nvi---gm~km 877 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG-VVLYEYLGEE--YPEVLGSILGAIKAIVNVI---GMTKM 877 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh-HHHHHhcCcc--cHHHHHHHHHHHHHHHHhc---ccccc
Confidence 3445666677788888777777654322221 12222223 3556666654 3434444444444444211 01111
Q ss_pred chhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh---HHHHHHhhCCcHHHHHHHHHHHHHh
Q 016423 288 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT---EALVLKDFCGLDTALERLRQQLQEV 353 (390)
Q Consensus 288 ~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~---~r~~~~~~~gL~~~L~~Lr~~l~el 353 (390)
.+- -.++++.|..+|++.+..+++.+...|+.++..+++ .|.-++ -| -.+|+.|+...++.
T Consensus 878 ~pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR-Ic--feLlelLkahkK~i 941 (1172)
T KOG0213|consen 878 TPP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR-IC--FELLELLKAHKKEI 941 (1172)
T ss_pred CCC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH-HH--HHHHHHHHHHHHHH
Confidence 111 258899999999999999999999999999987654 333333 22 24577777777763
No 183
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=75.84 E-value=12 Score=32.53 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=74.0
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCC
Q 016423 206 LSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 206 l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~ 284 (390)
+..+|.-..++. .+.--..+.-|+-+|+..+.+... .+..|..-|.++ +++++..|+.++-.++. +.+
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~ke-----a~~~l~krl~~~--~~~vq~~aL~lld~lvk----Ncg 74 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSPDGAKE-----AARALRKRLKHG--NPNVQLLALTLLDALVK----NCG 74 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHH-----HHHHHHHHHTTS--SHHHHHHHHHHHHHHHH----HSH
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHH-----HHHHHHHHHhCC--CHHHHHHHHHHHHHHHH----cCC
Confidence 334444444432 112234555688888887554433 345677878875 67899999999999996 455
Q ss_pred CCCchhhhhcCchHHHHHhhcCC-Chh---HHHHHHHHHHHHHh
Q 016423 285 KVEPPLFRDRFFLKSVVDLTASA-DLD---LQEKALAAIKNLLQ 324 (390)
Q Consensus 285 ~~~~~~l~~~g~v~~Lv~lL~~~-d~~---v~EkAL~aL~~L~~ 324 (390)
+.+...+.+..|+..+..++... ... |+++++..|.....
T Consensus 75 ~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 75 PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 67777788889999999988764 333 89999988877664
No 184
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.84 E-value=39 Score=36.10 Aligned_cols=176 Identities=13% Similarity=0.126 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc-----cccCCC----CChHHHHHHHH
Q 016423 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-----NGQLNH----PDTDIRKISAW 184 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnA-----n~lL~s----~~~~vR~~Aa~ 184 (390)
+.|+.+|+...|.+.-...|+ +.+.+...+..+...++-.+-..+-.-+.. -.++.+ +++-++..|.-
T Consensus 343 r~~~~Dal~~~GT~~a~~~i~---~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l 419 (574)
T smart00638 343 RRIFLDAVAQAGTPPALKFIK---QWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALL 419 (574)
T ss_pred HHHHHHHHHhcCCHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHH
Confidence 456666666555543334444 445555566555555554444444221111 134433 45678888888
Q ss_pred HHHHHhh----CChHHHHHHHhcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhc
Q 016423 185 ILGKASQ----NNPLVQKQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 256 (390)
Q Consensus 185 vLgta~Q----NNp~~Q~~~le~g~l~~Ll~LL~s----~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~ 256 (390)
.+|+++. +++.++. .+-...++.|...|.. .+...+.-+|-||+|+ ++|.... .|..++.
T Consensus 420 ~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~i~---------~l~~~l~ 487 (574)
T smart00638 420 AYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSSIK---------VLEPYLE 487 (574)
T ss_pred HHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhHHH---------HHHHhcC
Confidence 8887654 3333321 1222356777766643 2233456677788876 3444433 3333333
Q ss_pred -CCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHH
Q 016423 257 -NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALA 317 (390)
Q Consensus 257 -s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~ 317 (390)
+...+..+|.-|++.|..++. .++ ..+-+.+..++... ++++|-.|..
T Consensus 488 ~~~~~~~~iR~~Av~Alr~~a~-----~~p--------~~v~~~l~~i~~n~~e~~EvRiaA~~ 538 (574)
T smart00638 488 GAEPLSTFIRLAAILALRNLAK-----RDP--------RKVQEVLLPIYLNRAEPPEVRMAAVL 538 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-----hCc--------hHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 333467899999999998873 122 12333445555443 7788887763
No 185
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=75.37 E-value=54 Score=37.97 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=87.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc---hHHHHH--c
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYV--E 245 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a---~~~f~~--~ 245 (390)
+.|=+..+|+.|+|+|..+++--|+ .+..+.+|+|+....+.+...|.-+.-|.+.++.+...- ...+.+ -
T Consensus 553 v~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i 628 (1133)
T KOG1943|consen 553 VCHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI 628 (1133)
T ss_pred cccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh
Confidence 4567899999999999999877774 444578999999998888777877777777766542221 121211 1
Q ss_pred CcHHHHHHHh-----cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHH
Q 016423 246 AGDLMLQDIL-----GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 320 (390)
Q Consensus 246 gGl~~L~~lL-----~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~ 320 (390)
.|+.-++.-+ +... ...++.-.+.++..+. .+.......+...+|-..+.+.+..++ .+++.|..++.
T Consensus 629 ~~l~~ii~~~~~~~~~rg~-~~lmr~~~~~~Ie~~s-----~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~ 701 (1133)
T KOG1943|consen 629 AGLLSIIPPICDRYFYRGQ-GTLMRQATLKFIEQLS-----LSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVS 701 (1133)
T ss_pred hhhhhhccHHHHHHhccch-HHHHHHHHHHHHHHhh-----hccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHH
Confidence 2321122211 1110 1223333444444443 233444445566677778888886666 88888888888
Q ss_pred HHHh
Q 016423 321 NLLQ 324 (390)
Q Consensus 321 ~L~~ 324 (390)
.+++
T Consensus 702 ~l~s 705 (1133)
T KOG1943|consen 702 DLVS 705 (1133)
T ss_pred HHHH
Confidence 8775
No 186
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=75.21 E-value=1.1e+02 Score=32.40 Aligned_cols=180 Identities=17% Similarity=0.126 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhhccc----c--ccc------ccCC-CCChHHHHHHHHHHHHHhhCChH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQEL-LILVEPI----D--NAN------GQLN-HPDTDIRKISAWILGKASQNNPL 195 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~L-e~lve~I----D--nAn------~lL~-s~~~~vR~~Aa~vLgta~QNNp~ 195 (390)
+++++..+..+.+. -..+++..|+.+| .+++++= + -+. ..|. +.+..+|+.|..+|+.|+-|-|.
T Consensus 285 ~~~v~~~l~~~~g~-e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 285 SALVADLLKEISGS-ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hHHHHHHHHhccCc-cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 45666666666666 3445566666543 4444440 1 011 3443 47888999999999999988664
Q ss_pred HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 016423 196 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 275 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L 275 (390)
-=..-.+ =++.+++.--.+..+++-.-|--+.+-++-.+.|-+.- ..+..++.+. +++ .-.-++-.++-|
T Consensus 364 ~l~DstE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I-------~~i~~~Ilt~-D~~-~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 364 RLFDSTE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI-------VNISPLILTA-DEP-RAVAVIKMLTKL 433 (516)
T ss_pred hhhchHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH-------HHHhhHHhcC-cch-HHHHHHHHHHHH
Confidence 3222222 24667777776666655444444444444444443222 2344444432 132 222233345555
Q ss_pred hhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 276 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 276 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+... ..+++.. +-..+.|.+++--.+....+|..|.-||..++..
T Consensus 434 ~e~l---~~EeL~~--ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 434 FERL---SAEELLN--LLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred Hhhc---CHHHHHH--hhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 5311 0011111 1246778888888999999999999999999864
No 187
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=74.75 E-value=8 Score=34.76 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc-ccccc------------ccCCCCChHHHHHHHHHHHHHhhCChH
Q 016423 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNAN------------GQLNHPDTDIRKISAWILGKASQNNPL 195 (390)
Q Consensus 129 d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~-IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~ 195 (390)
+++...+.++.|+++... +....++=|..-|-+ .|.|- .-..+ .---+..|..+||||...
T Consensus 20 ~a~Qt~~lielLk~~~~~--~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~-~~Is~~~Av~LLGtM~GG--- 93 (154)
T PF11791_consen 20 NAEQTAELIELLKNPPAG--EEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISS-PLISPAEAVELLGTMLGG--- 93 (154)
T ss_dssp -HHHHHHHHHHHHS--TT---HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-B-TTB-HHHHHHHHTTS-SS---
T ss_pred CHHHHHHHHHHHhCCCCc--cHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccC-CCcCHHHHHHHHhhccCC---
Confidence 345566666666665544 222334444444433 34443 11111 112367899999999444
Q ss_pred HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC
Q 016423 196 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~ 234 (390)
++ +++||.+|.+++.++...|.-+|+..+==
T Consensus 94 -------YN-V~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 94 -------YN-VQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp -------TT-HHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred -------Cc-HHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 23 89999999887778888999999986543
No 188
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=73.33 E-value=1e+02 Score=33.57 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=79.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCCh--hHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 208 KLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF--EIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 208 ~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~--d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
.++.++.+.++..+.-|+--++++-.+ +....+|+...|+..|..++.+... ...+..-.+..++.|.. .+
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elme----hg-- 159 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELME----HG-- 159 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh----hc--
Confidence 344555555544444466666776555 5556899999999999999987532 33344444444444442 11
Q ss_pred CCchhhhhcCchHHHHHhhcC--CChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 286 VEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL~~--~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
-..=......+|...+.+.+- -+..+-..||..|.+++-.....++.+...--++.++..|..
T Consensus 160 vvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~ 224 (713)
T KOG2999|consen 160 VVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV 224 (713)
T ss_pred eeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh
Confidence 111112234455555555533 378899999999999998765566665544455555554443
No 189
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=73.18 E-value=1e+02 Score=31.67 Aligned_cols=149 Identities=12% Similarity=0.088 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHH----------------------------------HHHHHH
Q 016423 180 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE----------------------------------EAVKAL 225 (390)
Q Consensus 180 ~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~----------------------------------vr~kAL 225 (390)
.+|..+|-++....+.+=..|...||+..++..+..+-.. ..+..+
T Consensus 2 s~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lL 81 (379)
T PF06025_consen 2 SRAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLL 81 (379)
T ss_pred hHHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHH
Confidence 3678889999999888888899999999998887422100 011223
Q ss_pred HHHHHHhh---CCccchHHHHH-cCcHHHHHHHhcCCC-hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHH
Q 016423 226 YTVSSLIR---NNLAGQEMFYV-EAGDLMLQDILGNSS-FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 300 (390)
Q Consensus 226 ~ALSsLiR---~~~~a~~~f~~-~gGl~~L~~lL~s~~-~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~L 300 (390)
-.|+-++. ++.....-+.+ ..-+..|..++.+.. -...+-.-|+.++++++ +.+|.....+.+.|+++.+
T Consensus 82 k~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I-----~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 82 KFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFI-----HNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHH-----hcCCchhHHHHHcCChHHH
Confidence 44555555 22223333444 233677777887542 35567888999999999 4688999999999999999
Q ss_pred HHhhc-CC---ChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 301 VDLTA-SA---DLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 301 v~lL~-~~---d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
.+.+. .. ..++.-..-.++.+|. .+..-.+.++
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~Aic-LN~~Gl~~~~ 193 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAIC-LNNRGLEKVK 193 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHh-cCHHHHHHHH
Confidence 99988 32 4455555555555544 2333344444
No 190
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=72.18 E-value=52 Score=32.02 Aligned_cols=139 Identities=17% Similarity=0.128 Sum_probs=77.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s--~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|+++++.+|..|..+|+.+..+=|.-. +...-+..|+..+.+ ++.....-++.++.+|++...-....
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~----- 77 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES----- 77 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-----
Confidence 47899999999999999999999866321 222223444444322 12233334477777777553322111
Q ss_pred cHHHHHHHhcC---CChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh--hcCchHHHHHhhcCC-ChhHHHHHHHHHH
Q 016423 247 GDLMLQDILGN---SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASA-DLDLQEKALAAIK 320 (390)
Q Consensus 247 Gl~~L~~lL~s---~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~ 320 (390)
+..++..+++. +.-....|.++-.++..|+... ...+. ..+++..+++++... |+...-.+-..+.
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--------~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~ 149 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--------REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLK 149 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--------HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33444444431 1123445777777777777521 11122 236677777777665 6655555555555
Q ss_pred HHH
Q 016423 321 NLL 323 (390)
Q Consensus 321 ~L~ 323 (390)
.+.
T Consensus 150 ~i~ 152 (262)
T PF14500_consen 150 VIL 152 (262)
T ss_pred HHH
Confidence 444
No 191
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=72.05 E-value=22 Score=38.29 Aligned_cols=177 Identities=12% Similarity=0.086 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc-----cccCCC----CChHHHHHHHH
Q 016423 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-----NGQLNH----PDTDIRKISAW 184 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnA-----n~lL~s----~~~~vR~~Aa~ 184 (390)
++++-+|+-..|.+.-+..|++. +.+...+..+....|-.|-..+-..+.. -.++.+ .++.++..|.-
T Consensus 381 r~~~lDal~~aGT~~av~~i~~~---I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L 457 (618)
T PF01347_consen 381 RKIFLDALPQAGTNPAVKFIKDL---IKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALL 457 (618)
T ss_dssp HHHHHHHHHHH-SHHHHHHHHHH---HHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHH
Confidence 55666666655554334444444 3445556555555555555544111111 133333 45678888887
Q ss_pred HHHHHhhCChHH---------HHHHHhcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 185 ILGKASQNNPLV---------QKQVLELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 185 vLgta~QNNp~~---------Q~~~le~g~l~~Ll~LL~----s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
.+|+++...... ....+....++.|...+. ..+...+..+|-||+|+ +++. .++.|
T Consensus 458 ~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~---------~i~~l 526 (618)
T PF01347_consen 458 SLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPE---------SIPVL 526 (618)
T ss_dssp HHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GG---------GHHHH
T ss_pred HHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCch---------hhHHH
Confidence 877776542111 122222345677777765 22345678899999998 3333 34455
Q ss_pred HHHhcCC-ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHH
Q 016423 252 QDILGNS-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALA 317 (390)
Q Consensus 252 ~~lL~s~-~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~ 317 (390)
..++.+. ..+..+|..|++.+..+.. . ....+-+.+..++... +.++|-.|..
T Consensus 527 ~~~i~~~~~~~~~~R~~Ai~Alr~~~~-----~--------~~~~v~~~l~~I~~n~~e~~EvRiaA~~ 582 (618)
T PF01347_consen 527 LPYIEGKEEVPHFIRVAAIQALRRLAK-----H--------CPEKVREILLPIFMNTTEDPEVRIAAYL 582 (618)
T ss_dssp HTTSTTSS-S-HHHHHHHHHTTTTGGG-----T---------HHHHHHHHHHHHH-TTS-HHHHHHHHH
T ss_pred HhHhhhccccchHHHHHHHHHHHHHhh-----c--------CcHHHHHHHHHHhcCCCCChhHHHHHHH
Confidence 5555544 3466788899888887753 1 1224445566666554 6788888863
No 192
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=72.01 E-value=8.7 Score=35.55 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 254 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~l 254 (390)
-..+-..+..+|...+.+|++.|..+.++ ++.++..+.......-.-+...+.++.++|+.....+.+.. +..++.+
T Consensus 74 ~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~l 150 (207)
T PF01365_consen 74 FKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIEL 150 (207)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHH
Confidence 34677899999999999999999999986 44444444433322234567788999999999999987666 8888888
Q ss_pred hcCCChhHHHHHHHHHHHHHHhh
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+...+ -+.+-+-+|+.|+.
T Consensus 151 l~~~g----r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 151 LRKHG----RQPRYLDFLSSLCV 169 (207)
T ss_dssp -----------------------
T ss_pred HHHcC----CChHHHHHHhhhcc
Confidence 88642 24467778888885
No 193
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=71.70 E-value=1.1e+02 Score=30.39 Aligned_cols=149 Identities=20% Similarity=0.116 Sum_probs=81.5
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC--CccchHHHHHcCcH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRN--NLAGQEMFYVEAGD 248 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~--~~~a~~~f~~~gGl 248 (390)
......|..|...|-.+.+.+.. .+.+.+. -.+..+++.++..+.+.+.-|+.+++-++=. .......++ ..-.
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~ 131 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELK 131 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHH
Confidence 34577788888887777766642 2222222 3577788888776655555565555555333 223334444 2456
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHH--HHhhc----------CCChhHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV--VDLTA----------SADLDLQEKAL 316 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~L--v~lL~----------~~d~~v~EkAL 316 (390)
++|..++.+....+++|..++..|.-++.- . ..+++... .-...+..+ ...++ .++..++-.|+
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv-~-~~d~~~~~--~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFV-G-GSDEEETE--ELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHh-h-cCChhHHH--HHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 788999887655667776666555443321 0 11222111 011122211 11111 12467999999
Q ss_pred HHHHHHHhcCh
Q 016423 317 AAIKNLLQLRT 327 (390)
Q Consensus 317 ~aL~~L~~~~~ 327 (390)
.+-.-|++.-+
T Consensus 208 ~aW~lLlt~~~ 218 (309)
T PF05004_consen 208 SAWALLLTTLP 218 (309)
T ss_pred HHHHHHHhcCC
Confidence 99988887543
No 194
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.01 E-value=6 Score=43.25 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=76.1
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 279 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~ 279 (390)
++..|+=..++.=|.++--+||..|++++++|..+.|.-.. ..+..|++.+.+. ..-+|.||.+.|+.++.
T Consensus 369 iI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE--~~~VRL~ai~aL~~Is~-- 439 (823)
T KOG2259|consen 369 IIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE--IEVVRLKAIFALTMISV-- 439 (823)
T ss_pred cccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH--HHHHHHHHHHHHHHHHH--
Confidence 44445556667667665568999999999999988665322 3457899999986 55688899999999984
Q ss_pred hhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHH
Q 016423 280 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 321 (390)
Q Consensus 280 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~ 321 (390)
+ ..+....++.+...|.....++++.....|.+
T Consensus 440 ----~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 440 ----H-----LAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred ----H-----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 1 23455677788888888888888877554443
No 195
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=70.93 E-value=38 Score=33.16 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=69.6
Q ss_pred ChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc------cchHHHHH-cC
Q 016423 175 DTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL------AGQEMFYV-EA 246 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~------~a~~~f~~-~g 246 (390)
.+-+|-.+..|||+++++ ++++-..++....+|..++.+...++--+.-|.+-+--++-+.. ...+.|.. ..
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~ 188 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM 188 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH
Confidence 467999999999999997 67788888888999999999988766567788888887765532 12334432 33
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
.+..++..+..+ +++|+-+.++..-..|+
T Consensus 189 vL~~mV~~l~~~-pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 189 VLNKMVEQLVKQ-PSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HHHHHHHHHHHS---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccC-CChhHHHHHHHHHHHHc
Confidence 455555444433 26777777777777766
No 196
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.33 E-value=1.1e+02 Score=33.32 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhccccccc------------ccCCCCCh-HHHHHHHHHHHHHh---hCChHHHHHHHhcC-cHHHH
Q 016423 147 LEDSQRALQELLILVEPIDNAN------------GQLNHPDT-DIRKISAWILGKAS---QNNPLVQKQVLELG-ALSKL 209 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~-~vR~~Aa~vLgta~---QNNp~~Q~~~le~g-~l~~L 209 (390)
++-+..|+-=++++|----++. +++.++++ .++..|..+-+.+. ..-..-++ +.+| .+..|
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~--id~~~ii~vl 341 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE--IDYGSIIEVL 341 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc--cchHHHHHHH
Confidence 4556667777777775444332 55655555 57777766554332 22111122 4443 57888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.+.++++..+.|..++.=|.-+-+.+|. +-......-+..|...|++++ ..+..++++++.+++.
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~s--d~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRS--DEVVLLALSLLASICS 406 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCch--hHHHHHHHHHHHHHhc
Confidence 8999998888999999999988766554 444444567788888888873 4478899999999996
No 197
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=70.13 E-value=58 Score=39.06 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=64.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChH------HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPL------VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 242 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~------~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f 242 (390)
..|..+...||..|..||+.++.-.|. +|..+. .-+.+.+..||..|+--+|-.|-.+|.-..++
T Consensus 823 ~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh---------~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 823 SVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH---------GRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH---------HhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 345667778888888888888765443 343332 23444456788888888887777777766666
Q ss_pred HHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 243 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 243 ~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+ ..+..-+.++ .+-+|.++...++++|.
T Consensus 894 Y-----~~i~erIlDt--gvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 894 Y-----DQIIERILDT--GVSVRKRVIKILRDICE 921 (1692)
T ss_pred H-----HHHHhhcCCC--chhHHHHHHHHHHHHHH
Confidence 5 3455555554 67799999999999996
No 198
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=69.85 E-value=66 Score=29.39 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=51.6
Q ss_pred CCCChHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchH
Q 016423 172 NHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 240 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QN---Np~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~ 240 (390)
-+++..+|..|..+|+.+.+. ||. -++|.|+.|..+++..++.+|...+..+...|+.-..
T Consensus 18 ~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 18 LSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred hCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 568899999999999999876 662 3799999999998889999999999999888775433
No 199
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=69.83 E-value=1.9e+02 Score=32.30 Aligned_cols=121 Identities=20% Similarity=0.161 Sum_probs=82.2
Q ss_pred HHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC
Q 016423 227 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 306 (390)
Q Consensus 227 ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~ 306 (390)
+|.+++-.+|.....|.+.||..++..++..- +...+++++..++.+++... ...+....+..-.+ ...-.++..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~---~~~~~~~~~~~~~~-~~f~~~~~~ 568 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVL---ELRELLMIFEFIDF-SVFKVLLNK 568 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHH-HHHHHHHhh
Confidence 88899999999999999999999999999965 45669999999999999632 11222222222222 122235555
Q ss_pred CCh-hHHHHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHHHhhhhh
Q 016423 307 ADL-DLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEE 357 (390)
Q Consensus 307 ~d~-~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~el~~~e 357 (390)
.+. +.-..|...|..++..++. . ..++. ..+.+++...+......+
T Consensus 569 w~~~ersY~~~siLa~ll~~~~~----~-~~~~~r~~~~~~l~e~i~~~~~~~ 616 (699)
T KOG3665|consen 569 WDSIERSYNAASILALLLSDSEK----T-TECVFRNSVNELLVEAISRWLTSE 616 (699)
T ss_pred cchhhHHHHHHHHHHHHHhCCCc----C-ccccchHHHHHHHHHHhhccCccc
Confidence 544 8888888888888886533 1 13343 566677777776655433
No 200
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.80 E-value=1.1e+02 Score=33.71 Aligned_cols=93 Identities=23% Similarity=0.117 Sum_probs=62.9
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
.+.+++..||.+.+++|+.++-+ .+--+..+-.|.+.+|.+-+-+-...||..|+.+|+-+=.. ..+.+.+. ..
T Consensus 99 g~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~-~~neen~~----~n 172 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM-ELNEENRI----VN 172 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCChHHHH----HH
Confidence 45789999999999999998544 33333556567788888777665678999999998876322 22222332 23
Q ss_pred HHHHHhcCCChhHHHHHHHH
Q 016423 250 MLQDILGNSSFEIRLHRKAV 269 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~ 269 (390)
.|..+++.+ ++..+|+-|+
T Consensus 173 ~l~~~vqnD-PS~EVRr~al 191 (885)
T COG5218 173 LLKDIVQND-PSDEVRRLAL 191 (885)
T ss_pred HHHHHHhcC-cHHHHHHHHH
Confidence 777888865 3455666554
No 201
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.52 E-value=1.2e+02 Score=34.01 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=83.4
Q ss_pred CCChHHHHHHHHHHHHHh---hCCh---HHHHHHHhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhhCCccc------
Q 016423 173 HPDTDIRKISAWILGKAS---QNNP---LVQKQVLELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAG------ 238 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~---QNNp---~~Q~~~le~g~l~~Ll~LL~--s~~~~vr~kAL~ALSsLiR~~~~a------ 238 (390)
-+++..|.+-..|+-++. |.-| ++|+.-.+.-++=..+.+.. ++++++-++|..+|+.++.+...+
T Consensus 271 ~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaL 350 (938)
T KOG1077|consen 271 PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLAL 350 (938)
T ss_pred CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhH
Confidence 356678888777776653 3222 34444333333333444433 233567889999999988876654
Q ss_pred ------------hHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC
Q 016423 239 ------------QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 306 (390)
Q Consensus 239 ------------~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~ 306 (390)
.+++..+ ...++..|+... |+.+|+||+-||+.+|. .+.. .-+|.-+.+-|.+
T Consensus 351 Esm~~L~ss~~s~davK~h--~d~Ii~sLkter-DvSirrravDLLY~mcD-------~~Na-----k~IV~elLqYL~t 415 (938)
T KOG1077|consen 351 ESMCKLASSEFSIDAVKKH--QDTIINSLKTER-DVSIRRRAVDLLYAMCD-------VSNA-----KQIVAELLQYLET 415 (938)
T ss_pred HHHHHHHhccchHHHHHHH--HHHHHHHhcccc-chHHHHHHHHHHHHHhc-------hhhH-----HHHHHHHHHHHhh
Confidence 3343333 677888888542 78899999999999994 1111 1234455555666
Q ss_pred CChhHHHHHHHHHHHHH
Q 016423 307 ADLDLQEKALAAIKNLL 323 (390)
Q Consensus 307 ~d~~v~EkAL~aL~~L~ 323 (390)
.|..++|.-..-+.-|+
T Consensus 416 Ad~sireeivlKvAILa 432 (938)
T KOG1077|consen 416 ADYSIREEIVLKVAILA 432 (938)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 67777766654444444
No 202
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=69.44 E-value=17 Score=33.53 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhC-CccchH----HHH------Hc-CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh---h---h
Q 016423 220 EAVKALYTVSSLIRN-NLAGQE----MFY------VE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---L---E 281 (390)
Q Consensus 220 vr~kAL~ALSsLiR~-~~~a~~----~f~------~~-gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~---l---~ 281 (390)
+|..|+++|+.++++ .+.... .|. .. ....++.-++.++ ++|+|.-|+.++..|+... + +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp--~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP--SPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC--chhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 688999999999999 433211 111 11 2344555555665 8999999999999999632 1 1
Q ss_pred cCC-C--CCchhh-----hhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHH
Q 016423 282 NMH-K--VEPPLF-----RDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQ 351 (390)
Q Consensus 282 ~~~-~--~~~~~l-----~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~ 351 (390)
+.. + .+...- .=..+=..|+..|..+ +..+.-..+.|+..|++..+.+| + ..|+ .+.+..++..+.
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r--L--~~~ll~~~v~~v~~~l~ 155 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR--L--PPGLLTEVVTQVRPLLR 155 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh--c--CHhHHHHHHHHHHHHHh
Confidence 111 1 111111 1123334555666655 78889999999999999877654 3 2454 455555555544
Q ss_pred H
Q 016423 352 E 352 (390)
Q Consensus 352 e 352 (390)
.
T Consensus 156 ~ 156 (182)
T PF13251_consen 156 H 156 (182)
T ss_pred c
Confidence 4
No 203
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=69.35 E-value=1.3e+02 Score=30.11 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=106.4
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh-CCccchHHHHHcC--cHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR-NNLAGQEMFYVEA--GDLM 250 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR-~~~~a~~~f~~~g--Gl~~ 250 (390)
.+..++..+..++-++.|+. +..+.+.|++....+...++.-+.++++ +.......|...= ..+.
T Consensus 38 ~~~~~~~~g~~l~~~iL~~~------------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~ 105 (330)
T PF11707_consen 38 SDLSFQSYGLELIRSILQNH------------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKS 105 (330)
T ss_pred cchhHHHHHHHHHHHHHHHH------------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhh
Confidence 34447777777766665542 6777788888777777789999999999 6656666665442 3456
Q ss_pred HHHHhcCCC----hh-------HHHHHHHHHHHHHHhhhhhhcCCCCCc-hhhhhcCchHHHHHhhcCCChhHHHHHHHH
Q 016423 251 LQDILGNSS----FE-------IRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDRFFLKSVVDLTASADLDLQEKALAA 318 (390)
Q Consensus 251 L~~lL~s~~----~d-------~klr~KA~~LLs~L~~~~l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~a 318 (390)
|..++.-.. .. ..+|...+.++-.++. ..++..+ +.+...+.+..+..-|..++.++....|.+
T Consensus 106 l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~----~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~ 181 (330)
T PF11707_consen 106 LPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLS----SGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILET 181 (330)
T ss_pred HHHHhccccccccccccccccCcCHHHHHHHHHHHHHc----cCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHH
Confidence 777764211 10 1578888877777775 3455554 445677889999999999999999999999
Q ss_pred HHH-HHhcChhHHHHHHhhCCc--HHHHHHHHHHHH
Q 016423 319 IKN-LLQLRTTEALVLKDFCGL--DTALERLRQQLQ 351 (390)
Q Consensus 319 L~~-L~~~~~~~r~~~~~~~gL--~~~L~~Lr~~l~ 351 (390)
|.. ++... .-+... .+.+ +..|.+|.+-|.
T Consensus 182 l~~~Vl~~~-~v~r~~--K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 182 LKDKVLKDS-SVSRST--KCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHhccCC-CCChhh--hhhhcCHHHHHHHHHHhc
Confidence 995 55443 222222 2343 567777766555
No 204
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.71 E-value=2e+02 Score=33.81 Aligned_cols=201 Identities=14% Similarity=0.102 Sum_probs=113.5
Q ss_pred HhHHHHHHHHHHcCCC-ChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhccccccc------------ccCCCCCh
Q 016423 112 KRQMEIKELMEKLKTP-SDAQLIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNAN------------GQLNHPDT 176 (390)
Q Consensus 112 ~r~~~L~eal~~~~~~-~d~~~Mk~~l~~l~~~~--~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~ 176 (390)
|+.+.|.+++..-.+. -..+.+....+.+.++. ++.-.+..++.-|-.+++-.++=. =+++.-+.
T Consensus 673 K~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~ 752 (1176)
T KOG1248|consen 673 KAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNV 752 (1176)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccH
Confidence 4566777777541110 01123333333333322 222344445555555555544111 12256667
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHhcC------cHHHHHHhhcCC----CHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 177 DIRKISAWILGKASQNNPLVQKQVLELG------ALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 177 ~vR~~Aa~vLgta~QNNp~~Q~~~le~g------~l~~Ll~LL~s~----~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.-|..|-.+|-.+.. -+.+.+.| .|...+.+++.. ..-++..-+.|+.+++..+......-.-.+
T Consensus 753 ~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred HHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 788888887777762 01122222 455555555432 333333448999999887766555544556
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
-++.+...|.++ ...++.-|+.++.-++. ..|+.+-.-...-+++.+..+++.....++-++-..|.-|..
T Consensus 828 li~~V~~~L~s~--sreI~kaAI~fikvlv~-----~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 828 LISMVCLYLASN--SREIAKAAIGFIKVLVY-----KFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHHHH-----cCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 677888888876 56678889999998885 344433333334467777776666677777777766666654
No 205
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.63 E-value=37 Score=39.53 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=87.3
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
..+|+++.+|--++|.+.-=. ..|.+.. +|.|+.++. ++++-+|..++-|++-+.=-+|.-.+.+- +.|
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iS----a~fces~-l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T-----~~L 1003 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCIS----AEFCESH-LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWT-----EHL 1003 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhh----HHHHHHH-HHHHHHHHhcCCCceeeecchheccchhhhcccccchhh-----HHH
Confidence 356899999999999874322 2244443 999999998 44566899999999998877777666553 456
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHH
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 316 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL 316 (390)
..-|++. ++.+|+.|+..|++|+.. ..+.-.|.+.-+.-+|..++..+.+-|=
T Consensus 1004 y~rL~D~--~~~vRkta~lvlshLILn----------dmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1004 YRRLRDE--SPSVRKTALLVLSHLILN----------DMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred HHHhcCc--cHHHHHHHHHHHHHHHHh----------hhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 6677776 566899999999999852 1244457777777777777666666555
No 206
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=68.59 E-value=14 Score=37.31 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=54.5
Q ss_pred ccCCCCChH-HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016423 169 GQLNHPDTD-IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 233 (390)
Q Consensus 169 ~lL~s~~~~-vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR 233 (390)
++|.+.++. .-.-||.=|+..+.--|+....+.++|+=..++.|++++++.|+-.|+.|+-.++.
T Consensus 363 ~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 363 KYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 566665555 55669999999999999999999999999999999999999998888777766553
No 207
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=68.42 E-value=73 Score=34.81 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=60.0
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc-----------CcHHHHHHhhcCC---------------------CH
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-----------GALSKLMKMVKSS---------------------FV 218 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-----------g~l~~Ll~LL~s~---------------------~~ 218 (390)
++...-+.+..+..+|..+..|-|.+++.+++. ...-.++.+|..+ +.
T Consensus 422 ~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ 501 (898)
T COG5240 422 LQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENN 501 (898)
T ss_pred HhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhh
Confidence 344445566666666666666666666665542 1122333444322 22
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
-+|..|+.|||-..-+-. +.|....-..+|.+|+.+. |..+|-+|.|++.+|-
T Consensus 502 ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~--DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 502 IVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQ--DDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcc--cHHHHHHHHHHHHhhh
Confidence 357778888776543311 1222233456888999876 5669999999999985
No 208
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=68.40 E-value=33 Score=37.60 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------------ccCCCCChHHHHHHHHHHHHHhhCChHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------------GQLNHPDTDIRKISAWILGKASQNNPLV 196 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~ 196 (390)
+.++...+..|+++ +++-++.|.+-.--|.--+.+-. ..|...++++--.-..+|..+.+-.-..
T Consensus 603 ~~ivStiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 34555666666654 44555556555555444444322 4567788888777666666664432111
Q ss_pred HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc---chHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHH
Q 016423 197 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA---GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 273 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~---a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs 273 (390)
.-+-=-.|.+|.|..+|.+....+....+--++-++.+.|. ..+... ----|++.|.+. +..+|+.|...+.
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~--nKeiRR~A~~tfG 755 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSW--NKEIRRNATETFG 755 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHh--hHHHHHhhhhhhh
Confidence 00000137899999999987777777777667777766554 122111 112356666664 5668999999888
Q ss_pred HHhh
Q 016423 274 DLAK 277 (390)
Q Consensus 274 ~L~~ 277 (390)
++..
T Consensus 756 ~Is~ 759 (975)
T COG5181 756 CISR 759 (975)
T ss_pred hHHh
Confidence 8874
No 209
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=68.08 E-value=2e+02 Score=31.91 Aligned_cols=197 Identities=15% Similarity=0.124 Sum_probs=103.6
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHH---hc
Q 016423 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL---EL 203 (390)
Q Consensus 127 ~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~l---e~ 203 (390)
|++.....+++..+.+.+...++-...|..|.. |-+-+.+++.-|.-+|--++.|.+..-..+. ..
T Consensus 520 ~d~~~~~eeil~li~~s~~~~~e~~~~l~~l~~-----------l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~ 588 (745)
T KOG0301|consen 520 PDEINGLEEILSLIKNSSHYSSEVLQSLLALAI-----------LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQ 588 (745)
T ss_pred cchhhhHHHHHHhhcCCCCccchhHHHHHHHHH-----------HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhh
Confidence 466666777777776665444444443433333 2334678889999999988888664433332 12
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcC--CChhHHHHHHHHHHHHHHhhhhhh
Q 016423 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN--SSFEIRLHRKAVSLVGDLAKCQLE 281 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s--~~~d~klr~KA~~LLs~L~~~~l~ 281 (390)
+.+..++..++. .+..+.-++..|+|+..| +.+.+.|... ...+...+.. ...+..+++-.+.+.-++.--...
T Consensus 589 ~~~~~li~~~~~-~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~ 664 (745)
T KOG0301|consen 589 NLVGTLIPILNA-DPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQ 664 (745)
T ss_pred HHHHhhhccccc-chhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHh
Confidence 355666666663 234567778888998877 7777777655 4444433321 111233444444444443321111
Q ss_pred cCCCCCchhhhhcCchHHHHHhh----cC-CChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHH
Q 016423 282 NMHKVEPPLFRDRFFLKSVVDLT----AS-ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 282 ~~~~~~~~~l~~~g~v~~Lv~lL----~~-~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
.+.. .+.++.+...+ .. +|....-..|.||++|....... ..+.+..+.+....++|
T Consensus 665 -~~~~-------~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~-~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 665 -DNEQ-------LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV-IQLAKNRSVDSIAKKLK 726 (745)
T ss_pred -cccc-------cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH-HHHHHhcCHHHHHHHHH
Confidence 1111 23333333333 22 24444556677777777754222 23333445555544443
No 210
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.98 E-value=11 Score=43.57 Aligned_cols=125 Identities=20% Similarity=0.231 Sum_probs=86.8
Q ss_pred HHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhh
Q 016423 225 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 304 (390)
Q Consensus 225 L~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 304 (390)
.-+|-++++++..++..|.+++|..+|+.++-++ .-|.-.+.+++.|+. .++.. +.+..+-++|+.|
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind----ehRSslLrivscLit-----vdpkq----vhhqelmalVdtL 729 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRIVSCLIT-----VDPKQ----VHHQELMALVDTL 729 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHHHHHHhc-----cCccc----ccHHHHHHHHHHH
Confidence 3467789999999999999999999999998654 246777888888885 23331 2344566777777
Q ss_pred cCC------------ChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHH--HHHhhhhhhhhhh
Q 016423 305 ASA------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ--LQEVMLEEDQRDY 362 (390)
Q Consensus 305 ~~~------------d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~--l~el~~~e~~~ey 362 (390)
++. ..++.-..+.+|+.++..+...+.+|+..+|...++.+|.-- ..+++.+.|+--|
T Consensus 730 ksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvy 801 (2799)
T KOG1788|consen 730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVY 801 (2799)
T ss_pred HhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhH
Confidence 661 235566678888999877777888898888876555555422 4555554444444
No 211
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=67.98 E-value=36 Score=30.51 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=87.9
Q ss_pred hhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhC--CccchHHHHHcCcHHHHHHHhcCCChhHHHHH
Q 016423 190 SQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRN--NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 266 (390)
Q Consensus 190 ~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~--~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~ 266 (390)
=||+|.+=+.|+|.+.+..++++++.. +..++...+..+|-++.| ++.+..-....|-+.-++..=-+- .+..+..
T Consensus 12 Dq~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~-~~ee~l~ 90 (149)
T PF09758_consen 12 DQNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDF-SDEEVLS 90 (149)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCC-CcchhHH
Confidence 388999999999999999999999883 457899999999999988 445555556666666666653322 2445777
Q ss_pred HHHHHHHHHhhhhhhcCCCCCchhhhh-----cCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 267 KAVSLVGDLAKCQLENMHKVEPPLFRD-----RFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 267 KA~~LLs~L~~~~l~~~~~~~~~~l~~-----~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
--+.+|..|+.. -+++....+.. --+....+.++.++|.-+|-++-..+.++
T Consensus 91 yYIsfLK~lSlk----ln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 91 YYISFLKTLSLK----LNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHHHHHhh----cCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 788888888752 34443333322 22333446677888877777765554443
No 212
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.94 E-value=56 Score=36.79 Aligned_cols=134 Identities=12% Similarity=0.105 Sum_probs=86.4
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
|.++.+..+-..|..+||.|++++-.+... ++.-|+.++++.+..|...|+-.|--|+..+|.--.. -+.
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~t-----CL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~-----ii~ 469 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDT-----CLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE-----ILF 469 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhH-----HHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH-----HHH
Confidence 345566679999999999999998766665 5667999999888778888888888888776653212 234
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.|..++.+-. -+.-|.-.+||+.-.+.. -+.. --.+++.++.-+.+....++-.+|..-.-|.-
T Consensus 470 ~La~lldti~-vp~ARA~IiWLige~~e~-----vpri-----~PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 470 QLARLLDTIL-VPAARAGIIWLIGEYCEI-----VPRI-----APDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred HHHHHhhhhh-hhhhhceeeeeehhhhhh-----cchh-----chHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 4555554321 233455667888777641 1111 23455566666666666666666655554443
No 213
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.85 E-value=1.6e+02 Score=33.59 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh
Q 016423 177 DIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 255 (390)
Q Consensus 177 ~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL 255 (390)
+.|-..-.+|+..+|- ++-++..+- -.+...+..+.+++...|..++.+++.+|+-.......|. +.-...+..+.
T Consensus 821 d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ev~~~Il~l~ 897 (982)
T KOG4653|consen 821 DYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-HEVLQLILSLE 897 (982)
T ss_pred cceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHH
Confidence 3444444788888776 665665443 2456667777755456799999999999876543333332 23344445555
Q ss_pred cCCChhHHHHHHHHHHHHHHhh
Q 016423 256 GNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 256 ~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..+ ..+-+||-|+.+|..++.
T Consensus 898 ~~d-~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 898 TTD-GSVLVRRAAVHLLAELLN 918 (982)
T ss_pred ccC-CchhhHHHHHHHHHHHHh
Confidence 544 367789999999999985
No 214
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=65.82 E-value=21 Score=40.43 Aligned_cols=123 Identities=16% Similarity=0.118 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-----------ccCCCCC----hHHHHHHHHHHHHHhhCChH-
Q 016423 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-----------GQLNHPD----TDIRKISAWILGKASQNNPL- 195 (390)
Q Consensus 132 ~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-----------~lL~s~~----~~vR~~Aa~vLgta~QNNp~- 195 (390)
+.-..+.++...+.++--...+.|-++++++.-+|.+ +.|..+. +.+...|+.+|.+++.|-|.
T Consensus 572 I~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p 651 (1005)
T KOG2274|consen 572 ICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP 651 (1005)
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC
Confidence 4445677777776677666667788889988777776 3444444 78999999999999999432
Q ss_pred HHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH--HHHHHh
Q 016423 196 VQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL--MLQDIL 255 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~--~L~~lL 255 (390)
.=+.++. -++|++.+..- +++.++-..+--+++++|-..++....-...+|.. .++..+
T Consensus 652 L~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~ 713 (1005)
T KOG2274|consen 652 LPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVL 713 (1005)
T ss_pred ccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHH
Confidence 2233333 36899988864 44556667788888888877666544444555555 444443
No 215
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=63.76 E-value=83 Score=33.70 Aligned_cols=114 Identities=13% Similarity=0.192 Sum_probs=82.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc---cchHHHHHcCcHHHHHHHhcCC-----ChhHHHHHHHHHHHHHHhh
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNL---AGQEMFYVEAGDLMLQDILGNS-----SFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~---~a~~~f~~~gGl~~L~~lL~s~-----~~d~klr~KA~~LLs~L~~ 277 (390)
...++.|+...+++.|-.|+.-+--++++.. .+.+.++++=|+..+-++|.+. +++.-.+.-++.+|..+|+
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 3447788888888889999999999998843 4456688999999999999743 3455577778899999996
Q ss_pred hhhhcCCCCC--chhhhhcCchHHHHHhhcCC-Chh------HHHHHHHHHHHHHhcCh
Q 016423 278 CQLENMHKVE--PPLFRDRFFLKSVVDLTASA-DLD------LQEKALAAIKNLLQLRT 327 (390)
Q Consensus 278 ~~l~~~~~~~--~~~l~~~g~v~~Lv~lL~~~-d~~------v~EkAL~aL~~L~~~~~ 327 (390)
.|+. .+.++ +-++.+.+++... |.| +.+-+-.||..+++..+
T Consensus 93 ------~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~ 143 (698)
T KOG2611|consen 93 ------VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA 143 (698)
T ss_pred ------ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc
Confidence 3322 12222 3467777777553 555 88999999999888743
No 216
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.75 E-value=58 Score=36.30 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=77.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHH-----HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhh
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-----VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 280 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~-----~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l 280 (390)
+..+++||++++-.+|-..+-++++++-++..--+-.. -..-+.+|.+-|++. .+..|.||+..+..++.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~--~py~RtKalqv~~kifd--- 375 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT--YPYTRTKALQVLEKIFD--- 375 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHh---
Confidence 67889999999888999999999999987543221111 112234444445554 78899999999999984
Q ss_pred hcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 281 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 281 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
-+..... ..+.++..++..|.....-++.+|.....-|+.
T Consensus 376 --l~sk~~~--~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 376 --LNSKTVG--RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred --Ccccccc--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 2221111 245677788888888888899999888887774
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=63.64 E-value=1.1e+02 Score=36.01 Aligned_cols=177 Identities=17% Similarity=0.133 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhhccccccc----------ccCCCCChHHHHHHHHHHHHHhhC----ChHHHHHHHhcCcHHHHHHh
Q 016423 147 LEDSQRALQELLILVEPIDNAN----------GQLNHPDTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMKM 212 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~IDnAn----------~lL~s~~~~vR~~Aa~vLgta~QN----Np~~Q~~~le~g~l~~Ll~L 212 (390)
.+-|..||+-|..+--.||--+ .++..+.+.||..|...|..+..+ +|.--..|-++ .+|.|-.|
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l 515 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHL 515 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhh
Confidence 4667777777776666665443 677889999999998888776554 33334445555 58888888
Q ss_pred hcCCC-HHHHHHHHHHHHHH-------------hh-----CCccch---HHH------HHcCcH-HHHHHHhcCCChhHH
Q 016423 213 VKSSF-VEEAVKALYTVSSL-------------IR-----NNLAGQ---EMF------YVEAGD-LMLQDILGNSSFEIR 263 (390)
Q Consensus 213 L~s~~-~~vr~kAL~ALSsL-------------iR-----~~~~a~---~~f------~~~gGl-~~L~~lL~s~~~d~k 263 (390)
+.+.+ .-||..-...|+-| +| |.|... +.- .-+.++ .+...+|.++ ++-
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~--~~~ 593 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS--PPI 593 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC--chH
Confidence 88743 23443222222221 22 222221 000 011233 3334444544 333
Q ss_pred HHHHHHHHHHHHhhhhh-hcC---------------CCCCchhh---------------hhcCchHHHHHhhcCCChhHH
Q 016423 264 LHRKAVSLVGDLAKCQL-ENM---------------HKVEPPLF---------------RDRFFLKSVVDLTASADLDLQ 312 (390)
Q Consensus 264 lr~KA~~LLs~L~~~~l-~~~---------------~~~~~~~l---------------~~~g~v~~Lv~lL~~~d~~v~ 312 (390)
+|+--+--|.-||.--+ +.. +..++..| .+..+++.|.+-|.....-|.
T Consensus 594 Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Vi 673 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVI 673 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhH
Confidence 55443333444443110 011 11122111 366777888888888888999
Q ss_pred HHHHHHHHHHHhcC
Q 016423 313 EKALAAIKNLLQLR 326 (390)
Q Consensus 313 EkAL~aL~~L~~~~ 326 (390)
++||.+|..|.+.+
T Consensus 674 v~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 674 VSALGSLSILIKLG 687 (1431)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 218
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=63.46 E-value=67 Score=32.89 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHHHHHHhhCChH-HHHHHHhcCcHHHHHHhhc-CCCH--HHHHHHHHHHHHHhhCCcc-----------
Q 016423 173 HPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVK-SSFV--EEAVKALYTVSSLIRNNLA----------- 237 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~-~Q~~~le~g~l~~Ll~LL~-s~~~--~vr~kAL~ALSsLiR~~~~----------- 237 (390)
++...-|.+|+..|-+++...++ +...+. +.+..++.-.. +.+. ..+-.|++.++++.-....
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 55667899999999999876432 222222 23444433222 2222 2345689998887543211
Q ss_pred -chHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHH
Q 016423 238 -GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 316 (390)
Q Consensus 238 -a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL 316 (390)
....|....-++-|. .+.+..+-+|.+|+..+...-.. . +.=.-.++++.++.+|.+++.-++.-|+
T Consensus 300 v~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~--------l-~~~~l~~~~~~l~~~L~~~~~vv~tyAA 367 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQ--------L-PKEQLLQIFPLLVNHLQSSSYVVHTYAA 367 (370)
T ss_dssp S-HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGG--------S--HHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhh--------C-CHHHHHHHHHHHHHHhCCCCcchhhhhh
Confidence 246676666666655 11122456899999999888641 1 1112346999999999999988888887
Q ss_pred HHH
Q 016423 317 AAI 319 (390)
Q Consensus 317 ~aL 319 (390)
.|+
T Consensus 368 ~~i 370 (370)
T PF08506_consen 368 IAI 370 (370)
T ss_dssp HHH
T ss_pred hhC
Confidence 664
No 219
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=63.39 E-value=47 Score=32.16 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC
Q 016423 173 HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~ 234 (390)
++.+-+|-.+..+||..+||. +.+-.......++|.++++....+.--+.-|++-+.-++.+
T Consensus 157 ~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~d 219 (315)
T COG5209 157 SKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred CccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 456679999999999999995 44555555568999999999876654455566666555544
No 220
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=62.88 E-value=2.2e+02 Score=31.74 Aligned_cols=141 Identities=15% Similarity=0.136 Sum_probs=93.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
..++..+..++..+..++.+++--=+ -.+++.-++|.|-.+... .+..++..++-|+..++ ..++.+....-
T Consensus 396 ~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~lD~~~v~d~ 468 (700)
T KOG2137|consen 396 RSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QRLDKAAVLDE 468 (700)
T ss_pred HHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----HHHHHHHhHHH
Confidence 34566778899999999999865422 345666678888877543 34678999999999998 44555555555
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHH--HHHHHHHHHHHh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ--EKALAAIKNLLQ 324 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~--EkAL~aL~~L~~ 324 (390)
+..+..+.+.. ++.+....+.+...+..- ++.- ..+.-+.+++.++.+...+-..+. .+.+..+..++.
T Consensus 469 ~lpi~~~~~~~--dp~iv~~~~~i~~~l~~~-----~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~~ml~ 539 (700)
T KOG2137|consen 469 LLPILKCIKTR--DPAIVMGFLRIYEALALI-----IYSG-VEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIRLMLS 539 (700)
T ss_pred HHHHHHHhcCC--CcHHHHHHHHHHHHHHhh-----cccc-eeeehhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHh
Confidence 66667777665 566777888887777741 2221 345667889988888877643332 233444444443
No 221
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=62.63 E-value=41 Score=37.49 Aligned_cols=145 Identities=8% Similarity=0.053 Sum_probs=91.4
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCCHHHHH---HHHHHHHHHhhCCccchHHHHHc
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAV---KALYTVSSLIRNNLAGQEMFYVE 245 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~---kAL~ALSsLiR~~~~a~~~f~~~ 245 (390)
++..+++-+|..|+.++.++.-.+--.-..+.++ ..++....++......... .++-+|-+.+.++-+. .....
T Consensus 592 ~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~--~~~~~ 669 (748)
T KOG4151|consen 592 LMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSR--ILELL 669 (748)
T ss_pred HhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhh--HHHhh
Confidence 4456889999999999999987765555556664 4566666666554333333 2333477777776665 33346
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 246 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
.|...+..++.+. +..+|.+.+..+.++.. ...+..+.+.....+..+..+=.......++.+..+|....
T Consensus 670 ~~~e~~~~~i~~~--~~~~qhrgl~~~ln~~~-----~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~~a~ 740 (748)
T KOG4151|consen 670 EWLEILVRAIQDE--DDEIQHRGLVIILNLFE-----ALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCLSAAE 740 (748)
T ss_pred cchHHHHHhhcCc--hhhhhhhhhhhhhhHHH-----HHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 8999999999987 66789999999888552 23334444555555544444333344455555555554433
No 222
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=62.20 E-value=1.6e+02 Score=28.64 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=70.5
Q ss_pred HHHHHhhcc-cccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016423 155 QELLILVEP-IDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 233 (390)
Q Consensus 155 d~Le~lve~-IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR 233 (390)
..|..++++ +++++..+..++...-..|..+||-. .+.-++|+|+++++.++..+- .+..
T Consensus 34 P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~-----------re~~A~~~li~l~~~~~~~~~--------~l~G 94 (249)
T PF06685_consen 34 PELLKILEDAIERANELLDDEEYNLHFYALYLLAQF-----------REERALPPLIRLFSQDDDFLE--------DLFG 94 (249)
T ss_pred HHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH-----------hhhhhHHHHHHHHcCCcchHH--------HHHc
Confidence 344444443 45555666766666667888887765 334589999999986653210 0111
Q ss_pred CC----ccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh
Q 016423 234 NN----LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 292 (390)
Q Consensus 234 ~~----~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~ 292 (390)
+. -+..-+-+-.|-++.|..++.+++.+.-+|.-|+..+..++. .++..++.++
T Consensus 95 D~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~-----~~~~~Re~vi 152 (249)
T PF06685_consen 95 DFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVH-----EGPISREEVI 152 (249)
T ss_pred chhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH-----cCCCCHHHHH
Confidence 11 011111122355788888888887788899999999999985 4666666554
No 223
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=62.15 E-value=58 Score=34.82 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=93.0
Q ss_pred CCCChHHHHHHHHHHHHHhh----CChH---HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQ----NNPL---VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~Q----NNp~---~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
.+..+.++..+|-.+.++.. |=|. -|...+..|+= ++++.-++..|+.|+.-++=|+.-.+..-..
T Consensus 359 Ds~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv 431 (728)
T KOG4535|consen 359 DSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCN-------DSKNRLVKAAASRALGVYVLHPCLRQDVIFV 431 (728)
T ss_pred hhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhccc-------chHHHHHHHHHHhhceeEEeccchhhhHHHH
Confidence 45667788888888777633 2222 22223333321 2222236889999999999998877777666
Q ss_pred cCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC---CchhhhhcCchHHHHHhh--cCCChhHHHHHHHHH
Q 016423 245 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV---EPPLFRDRFFLKSVVDLT--ASADLDLQEKALAAI 319 (390)
Q Consensus 245 ~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~---~~~~l~~~g~v~~Lv~lL--~~~d~~v~EkAL~aL 319 (390)
.+....+...|.++ ....|.|++|.++++..-.. ..-|. ..+.+.-.-+.+.+-... ..++..++..+.++|
T Consensus 432 ~~aa~~il~sl~d~--~ln~r~KaawtlgnITdAL~-~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraL 508 (728)
T KOG4535|consen 432 ADAANAILMSLEDK--SLNVRAKAAWSLGNITDALI-VNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRAL 508 (728)
T ss_pred HHHHHHHHHHhhhH--hHhHHHHHHHHhhhhHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 77777777777765 46679999999999975211 11222 223322111111111111 223568889999999
Q ss_pred HHHHhcChhHHHHHHhhCCcHHHHH
Q 016423 320 KNLLQLRTTEALVLKDFCGLDTALE 344 (390)
Q Consensus 320 ~~L~~~~~~~r~~~~~~~gL~~~L~ 344 (390)
+++.+.- +.+. .|++..+.+
T Consensus 509 gnllQvl----q~i~-~~~~~e~~~ 528 (728)
T KOG4535|consen 509 GNLLQFL----QPIE-KPTFAEIIE 528 (728)
T ss_pred hhHHHHH----HHhh-hccHHHHHH
Confidence 9988742 3233 566544433
No 224
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=62.03 E-value=18 Score=28.50 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCch
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 297 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v 297 (390)
.+.|+||++.+.. .+.+...+.+.+-++.++++.... +...+|- ++|..-.|+. ...+-.+.+.+.||.
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s-~v~siRG-T~fy~Lglis-----~T~~G~~~L~~~gW~ 72 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENS-PVLSIRG-TCFYVLGLIS-----STEEGAEILDELGWE 72 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhC-CccchHH-HHHHHHHHHh-----CCHHHHHHHHHcCCC
Confidence 4578999999965 577877777788899999988754 1333444 5555555664 244455666676763
No 225
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=60.72 E-value=2.9e+02 Score=31.26 Aligned_cols=82 Identities=10% Similarity=0.109 Sum_probs=58.5
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
.++++.--+|.+||..+++. .....+..+-..+.+.....+++..-+|+..|.-|++++++|. ..-.. ..+.-.+
T Consensus 468 ~f~s~ygfL~Srace~is~~---eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k-~sahVp~ 542 (970)
T COG5656 468 AFRSNYGFLKSRACEFISTI---EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEK-FSAHVPE 542 (970)
T ss_pred hhcCcccchHHHHHHHHHHH---HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHH-HHhhhhH
Confidence 34677777999999999999 2334555555556777788888866789999999999999997 22233 3445555
Q ss_pred HHHHHhc
Q 016423 250 MLQDILG 256 (390)
Q Consensus 250 ~L~~lL~ 256 (390)
....+|.
T Consensus 543 tmekLLs 549 (970)
T COG5656 543 TMEKLLS 549 (970)
T ss_pred HHHHHHH
Confidence 5566654
No 226
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=59.80 E-value=64 Score=31.46 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=74.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccch-HHHHHcCcHHHHHHHhcC----------CChhHHHHHHHHHHHH
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYVEAGDLMLQDILGN----------SSFEIRLHRKAVSLVG 273 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~-~~f~~~gGl~~L~~lL~s----------~~~d~klr~KA~~LLs 273 (390)
.+|.++.++++.+.++|.+++..+.-++.+.+... ..+...|=.+++.+.|.. ......+-..|--++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999888999999999999999987765 234555545555555431 1135667777777777
Q ss_pred HHhhhhhhcCCCCC----chhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 274 DLAKCQLENMHKVE----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 274 ~L~~~~l~~~~~~~----~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.|+..+. ..+... ...++..|++..+...-..++..++...+..+..++.
T Consensus 200 ~L~~~~~-~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 200 SLLKTQE-NDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred HHHHhhc-cCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 7764211 111111 2233344444444333333356777777777666664
No 227
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=59.30 E-value=1.5e+02 Score=31.63 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=51.4
Q ss_pred cHHHHHHhhc-CC--CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhh
Q 016423 205 ALSKLMKMVK-SS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 281 (390)
Q Consensus 205 ~l~~Ll~LL~-s~--~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~ 281 (390)
.++.|...+. .. +..+|..|+||+.-+...+|.-. -+.|..++.+...+..+|.-|+.+|-.-
T Consensus 478 ~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRiaA~~~lm~t------ 543 (574)
T smart00638 478 SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRMAAVLVLMET------ 543 (574)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHHHHHHHHHhc------
Confidence 3455666665 22 24689999999998876665532 3456777776555677777665554322
Q ss_pred cCCCCCchhhhhcCchHHHHHhhcCC-ChhHHH
Q 016423 282 NMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQE 313 (390)
Q Consensus 282 ~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~E 313 (390)
+|. ..++..++..+..+ +..|.-
T Consensus 544 --~P~-------~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 544 --KPS-------VALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred --CCC-------HHHHHHHHHHHhhcCcHHHHH
Confidence 222 35556666666554 344433
No 228
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.95 E-value=67 Score=32.34 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc----ccccc--------ccCCCCChHHHHHHHHHHHHHhhC-ChHHH
Q 016423 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEP----IDNAN--------GQLNHPDTDIRKISAWILGKASQN-NPLVQ 197 (390)
Q Consensus 131 ~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~----IDnAn--------~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q 197 (390)
..+++++..+.+. .-+.+..+|..+..|.+- +++.- +-+++....|-..||.+++.++++ |..++
T Consensus 88 ~al~~~l~~L~s~--dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 88 AALKQALKKLSSD--DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHhchH--HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566676666543 334555555555433321 21111 567888899999999999999998 55555
Q ss_pred HHHHhcCcHHHHHHh-hcCC---CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHH
Q 016423 198 KQVLELGALSKLMKM-VKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 273 (390)
Q Consensus 198 ~~~le~g~l~~Ll~L-L~s~---~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs 273 (390)
+ .+..++.. +... +.-++..|.-||-+++.+-.|+. . +..|+.+++.. ..+++++++....
T Consensus 166 ~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-~------L~~L~~~~~~~--n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 166 Q------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-L------LRKLIPILQHS--NPRVRAKAALCFS 230 (334)
T ss_pred H------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-H------HHHHHHHHhhh--chhhhhhhhcccc
Confidence 5 23334433 3322 23478888889999988765542 2 23555566654 5778999887777
Q ss_pred HHh
Q 016423 274 DLA 276 (390)
Q Consensus 274 ~L~ 276 (390)
+..
T Consensus 231 ~~v 233 (334)
T KOG2933|consen 231 RCV 233 (334)
T ss_pred ccc
Confidence 665
No 229
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=58.83 E-value=62 Score=26.75 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
.+.+.|...+.|++.+. +. .. ..+..+.+-+...++.-+..++|-+-+++++.......+....+.+++.
T Consensus 16 ~S~~~I~~lt~~a~~~~-~~---a~------~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 16 NSQPSIQTLTKLAIENR-KH---AK------EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred ccHHHHHHHHHHHHHHH-HH---HH------HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 46677888888888877 11 11 1233444455555556688999999999999766666666666688888
Q ss_pred HHhcCCChhHHHHHHHHHHHH
Q 016423 253 DILGNSSFEIRLHRKAVSLVG 273 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs 273 (390)
...... +.++|.|...++.
T Consensus 86 ~~~~~~--~~~~r~kl~rl~~ 104 (114)
T cd03562 86 DAYEKV--DEKTRKKLERLLN 104 (114)
T ss_pred HHHHhC--CHHHHHHHHHHHH
Confidence 888754 6667777665553
No 230
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.73 E-value=4.3e+02 Score=32.27 Aligned_cols=125 Identities=21% Similarity=0.131 Sum_probs=70.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc----CCCHHHHH---HHHHHHHHHh-hCC----ccc
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSFVEEAV---KALYTVSSLI-RNN----LAG 238 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~----s~~~~vr~---kAL~ALSsLi-R~~----~~a 238 (390)
|.+..=.||+.+|-+|..+.|..|..|. .+ -+|.+...+- +-.+.||. ++..+||.+| |-+ +..
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~--~e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQV--KE--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 5667778999999999999999875553 33 3555544432 22245665 6777787764 322 222
Q ss_pred hHHHHHcCcHHHHHHH-hcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCC
Q 016423 239 QEMFYVEAGDLMLQDI-LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD 308 (390)
Q Consensus 239 ~~~f~~~gGl~~L~~l-L~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d 308 (390)
-+++. ..-++.|.+- .-++ -..+|+=+...+.+|+.. ....+++.+ ..+++.+....+.-.
T Consensus 1124 ~~~~l-~~iLPfLl~~gims~--v~evr~~si~tl~dl~Ks----sg~~lkP~~--~~LIp~ll~~~s~lE 1185 (1702)
T KOG0915|consen 1124 GKEAL-DIILPFLLDEGIMSK--VNEVRRFSIGTLMDLAKS----SGKELKPHF--PKLIPLLLNAYSELE 1185 (1702)
T ss_pred HHHHH-HHHHHHHhccCcccc--hHHHHHHHHHHHHHHHHh----chhhhcchh--hHHHHHHHHHccccc
Confidence 23332 2223333221 1122 445788899999999863 222333332 245555555555543
No 231
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.17 E-value=96 Score=33.92 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=93.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~L-L~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+|.+.++-+|-..+..+|.+--.- -..|++..|+.. +++.++.||+.|+-||+-.|-..+..
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~--------- 586 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL--------- 586 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcch---------
Confidence 6788888999988888777663221 013567778887 55556789999999999876554432
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+.-.+++|..+ .+.-+|.-+++.|.-.|... + ..-.+..|-.+...++.-++..|+-+++-++.+
T Consensus 587 lv~tvelLs~s-hN~hVR~g~AvaLGiacag~---G---------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q-- 651 (926)
T COG5116 587 LVGTVELLSES-HNFHVRAGVAVALGIACAGT---G---------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQ-- 651 (926)
T ss_pred hhHHHHHhhhc-cchhhhhhhHHHhhhhhcCC---c---------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh--
Confidence 33445556544 25667878888888777421 1 112233344444555667888888888877753
Q ss_pred hHHHHHHhhCCcHHHHHHHHHHHHHhhh
Q 016423 328 TEALVLKDFCGLDTALERLRQQLQEVML 355 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~Lr~~l~el~~ 355 (390)
| ...|-+-+.+.+.++..+..
T Consensus 652 -~------n~~Lnp~v~~I~k~f~~vI~ 672 (926)
T COG5116 652 -C------NPELNPNVKRIIKKFNRVIV 672 (926)
T ss_pred -c------CcccChhHHHHHHHHHHHHh
Confidence 2 23344555556655555543
No 232
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=57.12 E-value=1.2e+02 Score=35.88 Aligned_cols=171 Identities=17% Similarity=0.056 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHhhccc-----cccc-----------ccCCC-CChHHHHHHHHHHHHHhhCChHHHHHHH-------
Q 016423 146 SLEDSQRALQELLILVEPI-----DNAN-----------GQLNH-PDTDIRKISAWILGKASQNNPLVQKQVL------- 201 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~I-----DnAn-----------~lL~s-~~~~vR~~Aa~vLgta~QNNp~~Q~~~l------- 201 (390)
..+-+..|++.|-+++-.+ -||| .++.. ...-||..-|.+|+..+----..++...
T Consensus 475 ~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~ 554 (1431)
T KOG1240|consen 475 EADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGM 554 (1431)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455667777776666544 3455 34444 5566898888888877532211111111
Q ss_pred ---------------------hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc---------------------h
Q 016423 202 ---------------------ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---------------------Q 239 (390)
Q Consensus 202 ---------------------e~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a---------------------~ 239 (390)
-.++=.....||..+++-||...+.+|.-||--|... .
T Consensus 555 ~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR 634 (1431)
T KOG1240|consen 555 LNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLR 634 (1431)
T ss_pred ccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHH
Confidence 1122234445555555567888888887776543211 1
Q ss_pred HHHH---------------HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhh
Q 016423 240 EMFY---------------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 304 (390)
Q Consensus 240 ~~f~---------------~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 304 (390)
-+|+ +..-+++|.+.|.+. ..-+..+|+..++.|+.. ...+...-..+++.+..+|
T Consensus 635 ~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~--EE~Viv~aL~~ls~Lik~-------~ll~K~~v~~i~~~v~PlL 705 (1431)
T KOG1240|consen 635 GAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDG--EEAVIVSALGSLSILIKL-------GLLRKPAVKDILQDVLPLL 705 (1431)
T ss_pred HHHHhhccceEEEEeeeeHHHHHHHHHHHhccCc--chhhHHHHHHHHHHHHHh-------cccchHHHHHHHHhhhhhe
Confidence 1332 223356667777765 566888999999999851 1122222235677778889
Q ss_pred cCCChhHHHHHHHHHHHHHhc
Q 016423 305 ASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 305 ~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.+++.=+|..++..+.+..+.
T Consensus 706 ~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 706 CHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred eCchHHHHHHHHHHHHHHHhh
Confidence 999999999999988888764
No 233
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=56.96 E-value=49 Score=28.62 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhc-CchHH
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKS 299 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~-g~v~~ 299 (390)
-.-.+--|+.++++++.....+ ...|..=|.++ ++.++.|++.+|.+|+. .+++.+...+.++ .+|+.
T Consensus 18 pgy~~~Eia~~t~~s~~~~~ei-----~d~L~kRL~~~--~~hVK~K~Lrilk~l~~----~G~~~f~~~~~~~~~~Ik~ 86 (122)
T cd03572 18 PGYLYEEIAKLTRKSVGSCQEL-----LEYLLKRLKRS--SPHVKLKVLKIIKHLCE----KGNSDFKRELQRNSAQIRE 86 (122)
T ss_pred chHHHHHHHHHHHcCHHHHHHH-----HHHHHHHhcCC--CCcchHHHHHHHHHHHh----hCCHHHHHHHHHhHHHHHH
Confidence 3445556788888865554444 45677777775 46688999999999996 3455555555443 34444
Q ss_pred HHHhhcCC--------ChhHHHHHHHHHHHHHh
Q 016423 300 VVDLTASA--------DLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 300 Lv~lL~~~--------d~~v~EkAL~aL~~L~~ 324 (390)
+.+.=..+ ...||++|-.++..|-.
T Consensus 87 ~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 87 CANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 44443322 23677777666665543
No 234
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=55.93 E-value=1.7e+02 Score=33.59 Aligned_cols=103 Identities=11% Similarity=0.060 Sum_probs=73.8
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~----~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+++|-|-..+-.++-.++|+ ..++.-..+. .||.|+..+.... .....-|+--|.+++|+.|+........-.
T Consensus 583 ~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~ 660 (1005)
T KOG2274|consen 583 YSEDPQVASLAQDLFEELLQI-AANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA 660 (1005)
T ss_pred hcCCchHHHHHHHHHHHHHHH-HHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 467778888888888888774 4455444433 5999999998765 456778899999999998877555544556
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
++.+.++.-.. +|..+-..+-=+|+++++
T Consensus 661 FpaVak~tlHs-dD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 661 FPAVAKITLHS-DDHETLQNATECLRALIS 689 (1005)
T ss_pred hHHhHhheeec-CChHHHHhHHHHHHHHHh
Confidence 77777775322 245566778888888876
No 235
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=55.69 E-value=76 Score=35.70 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=91.5
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
.+....||.+|+..+...+.-.- +++... -.+|+++.+...++=-.|...+.+|..+.-=+ -..|....-++++
T Consensus 528 ~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~-~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~---g~ei~~~~Llp~~ 601 (759)
T KOG0211|consen 528 PDHVYSIREAAARNLPALVETFG--SEWARL-EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL---GQEITCEDLLPVF 601 (759)
T ss_pred hhhHHHHHHHHHHHhHHHHHHhC--cchhHH-HhhHHHHHHhcCcccchhhHHHHHHHHHHHHh---ccHHHHHHHhHHH
Confidence 33445788888888877766543 333332 25888888887765456777777777554211 1233344556777
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.++..++ .+.+|.+++-.+..+.. -......+.-+.+.+..+...+|.+++-.|..+...+..
T Consensus 602 ~~l~~D~--vanVR~nvak~L~~i~~--------~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 602 LDLVKDP--VANVRINVAKHLPKILK--------LLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHhccCC--chhhhhhHHHHHHHHHh--------hcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 7777776 55688899999999874 222345566667777777777799999999888877764
No 236
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=54.62 E-value=1.9e+02 Score=31.79 Aligned_cols=155 Identities=9% Similarity=-0.043 Sum_probs=85.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHc-Cc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-AG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~-gG 247 (390)
+-+.+++-.=|+.|+.++|.+...-.+.+---+-..++|-++.+.+++..-++..+.|+++.+.-+-+....--... +-
T Consensus 373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~ 452 (858)
T COG5215 373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLE 452 (858)
T ss_pred HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHH
Confidence 34567777888999999999977643444444445678888888775444455555566555543322221110000 11
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc-----CCChhHHHHHHHHHHHH
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA-----SADLDLQEKALAAIKNL 322 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~-----~~d~~v~EkAL~aL~~L 322 (390)
.+....-|.+ .++.-.+.+|.+-+|+.... ....+ .+.+.-..+...+-.+++ ..+...|..+-.+|++|
T Consensus 453 vsa~liGl~D---~p~~~~ncsw~~~nlv~h~a-~a~~~-~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtl 527 (858)
T COG5215 453 VSASLIGLMD---CPFRSINCSWRKENLVDHIA-KAVRE-VESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTL 527 (858)
T ss_pred HHHHHhhhhc---cchHHhhhHHHHHhHHHhhh-hhhcc-ccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 1121222333 46678889999999985321 11111 122222222222222222 23678899999999999
Q ss_pred HhcChh
Q 016423 323 LQLRTT 328 (390)
Q Consensus 323 ~~~~~~ 328 (390)
....++
T Consensus 528 i~~~~d 533 (858)
T COG5215 528 ILICPD 533 (858)
T ss_pred Hhhcch
Confidence 986554
No 237
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=53.15 E-value=53 Score=37.87 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=82.7
Q ss_pred cCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhh
Q 016423 203 LGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 281 (390)
Q Consensus 203 ~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~ 281 (390)
..++..+++-++.+ ..+++..|..-+-+...++..+ ..| ..|+.+|..+..++ -+.++.+++..++-+..
T Consensus 575 ~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~-~~f--e~~L~iLq~lCrd~--~vsvrk~~~~Sltel~~---- 645 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEA-SKF--EVVLSILQMLCRDR--MVSVRKTGADSLTELML---- 645 (1529)
T ss_pred HHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchh-hcc--hhHHHHHHHHhcCc--chHHHHHHHHHHHHHHh----
Confidence 34667777777744 4578888888888887776653 223 34589999998887 56689999999999885
Q ss_pred cCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 282 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 282 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.+|-.. -+...|+..|+.++...+.+++|+|+..+..++.
T Consensus 646 -~~pr~~--~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~ 685 (1529)
T KOG0413|consen 646 -RDPRLF--SLSSKWLHTLISMLNDTESDVTEHARKLIMKVLT 685 (1529)
T ss_pred -hCchhh--hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 233322 3467899999999999999999999997777664
No 238
>PLN03205 ATR interacting protein; Provisional
Probab=52.93 E-value=2.7e+02 Score=29.37 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=75.5
Q ss_pred CCCChHHHHHHHHHHHHHhhC-ChHHHH-HHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHH-----
Q 016423 172 NHPDTDIRKISAWILGKASQN-NPLVQK-QVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFY----- 243 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QN-Np~~Q~-~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~----- 243 (390)
.+....||-.|.+++-.++-. |++.+. .|...-+++.+-++|+.+. --|+..|+.-+-=| -|+|.-...|.
T Consensus 382 ~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLL-LNCpklL~iFcSg~~e 460 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLL-LNCPKLYDRFDSLHEE 460 (652)
T ss_pred ccchhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHH-HcCcHHHHHHhcCCcc
Confidence 367778998998888776544 666654 4555577888999998764 23555444332211 12222222221
Q ss_pred ---------------HcCcHH----HHHHHhcC---CChhHHHHHHHHHHHHHHhhhhhhcCCCCC---chhhhhcCchH
Q 016423 244 ---------------VEAGDL----MLQDILGN---SSFEIRLHRKAVSLVGDLAKCQLENMHKVE---PPLFRDRFFLK 298 (390)
Q Consensus 244 ---------------~~gGl~----~L~~lL~s---~~~d~klr~KA~~LLs~L~~~~l~~~~~~~---~~~l~~~g~v~ 298 (390)
...|++ -|.+++.. +..+++++++++.+|.++++.. +...+. .....+.+++.
T Consensus 461 ~~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSG--k~GfEilv~hkl~~~~NFLm 538 (652)
T PLN03205 461 KNSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSG--NSGYELLSNHKLPQDSNFLM 538 (652)
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcC--CCCceeeecccCCCCccHHH
Confidence 112333 34444442 2358999999999999999732 111111 12234567777
Q ss_pred HHHHhhcC
Q 016423 299 SVVDLTAS 306 (390)
Q Consensus 299 ~Lv~lL~~ 306 (390)
.+.++|-+
T Consensus 539 LILqvLvS 546 (652)
T PLN03205 539 LILHLLVA 546 (652)
T ss_pred HHHHHHHH
Confidence 77777743
No 239
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.18 E-value=53 Score=36.81 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHhhccccc---cc-----------------ccC-------CCCChHHHHHHHHHHHHHhhCChHHHH
Q 016423 146 SLEDSQRALQELLILVEPIDN---AN-----------------GQL-------NHPDTDIRKISAWILGKASQNNPLVQK 198 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDn---An-----------------~lL-------~s~~~~vR~~Aa~vLgta~QNNp~~Q~ 198 (390)
.++.|+.+|..|=++||+=.- |. ++. -=.+..+|..|..+++....+++..+.
T Consensus 423 ~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~ 502 (865)
T KOG1078|consen 423 NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP 502 (865)
T ss_pred CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc
Confidence 457888888888888887322 11 121 126778999999999999866664443
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016423 199 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 232 (390)
Q Consensus 199 ~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLi 232 (390)
.+.-.|.+.+.+.++++|-.|.+++.++-
T Consensus 503 -----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 503 -----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 34556667788878899999999999986
No 240
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=50.77 E-value=1.1e+02 Score=30.98 Aligned_cols=94 Identities=22% Similarity=0.128 Sum_probs=55.7
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhc
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~ 325 (390)
=+..|.+-+.+. .+..+|+-++.=|..-+ .++.++..|..+|+++.++..+... +.++.--++.|+..+...
T Consensus 22 ev~ylld~l~~~-~~~s~Rr~sll~La~K~------~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~ 94 (361)
T PF07814_consen 22 EVEYLLDGLESS-SSSSVRRSSLLELASKC------ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR 94 (361)
T ss_pred HHHHHHhhcccC-CCccHHHHHHHHHHHHh------CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc
Confidence 355666666632 35667777766666655 3788999999999999999999443 443444444455544443
Q ss_pred ChhHHHHHHhhCCcHHHHHHHH
Q 016423 326 RTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 326 ~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
...+...+.+.+-++=.+..|+
T Consensus 95 d~~~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 95 DGLNMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred CCcchhhhhchhHHHHHHHHhc
Confidence 3233343332333322244444
No 241
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=50.09 E-value=3.8e+02 Score=29.84 Aligned_cols=157 Identities=20% Similarity=0.203 Sum_probs=87.1
Q ss_pred CCCCHHHHHHhHHHHHHHHHHcCC-CCh----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccc-------c---cc
Q 016423 103 QRLSPSELKKRQMEIKELMEKLKT-PSD----AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-------D---NA 167 (390)
Q Consensus 103 ~~~s~e~l~~r~~~L~eal~~~~~-~~d----~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~I-------D---nA 167 (390)
.++.|++ ...+++++..++. +.+ .+.| .+++++.+ -+.+.+--|||-|+.++-.. | +.
T Consensus 516 ~kl~~d~----~~~~eeil~li~~s~~~~~e~~~~l-~~l~~l~~--wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~ 588 (745)
T KOG0301|consen 516 PKLNPDE----INGLEEILSLIKNSSHYSSEVLQSL-LALAILLQ--WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQ 588 (745)
T ss_pred cccCcch----hhhHHHHHHhhcCCCCccchhHHHH-HHHHHHhc--CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhh
Confidence 3455553 4566777766642 212 2223 45665554 35677888999998887542 2 12
Q ss_pred c---ccCCC--CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc----CCCHHHH----HHHHHHHHH-Hhh
Q 016423 168 N---GQLNH--PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSFVEEA----VKALYTVSS-LIR 233 (390)
Q Consensus 168 n---~lL~s--~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~----s~~~~vr----~kAL~ALSs-LiR 233 (390)
| .++.. ..+..+..++.+|+++..| |.-++.|... +..++..+. .++..++ .-|+. .|- ++.
T Consensus 589 ~~~~~li~~~~~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln-~sv~l~~ 664 (745)
T KOG0301|consen 589 NLVGTLIPILNADPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALN-YSVLLIQ 664 (745)
T ss_pred HHHHhhhcccccchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHH-HHHHHHh
Confidence 2 23322 4577888999999999777 8888887775 333333332 1222222 12221 222 222
Q ss_pred CCccchHHHHHcCcHHHHHHHhc---CCChhHHHHHHHHHHHHHHhh
Q 016423 234 NNLAGQEMFYVEAGDLMLQDILG---NSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 234 ~~~~a~~~f~~~gGl~~L~~lL~---s~~~d~klr~KA~~LLs~L~~ 277 (390)
.+. +.+|.+.+..++. .+..+..-.-+.+.+|.+|+.
T Consensus 665 ~~~-------~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 665 DNE-------QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred ccc-------ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 222 1567777766664 222344455677778888874
No 242
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.85 E-value=14 Score=37.76 Aligned_cols=54 Identities=7% Similarity=0.010 Sum_probs=46.0
Q ss_pred HHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 224 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 224 AL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.+.-|++||..|+.+|+.+.+.||++.+..-..-+..++-++..+...+..|+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~ 429 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQ 429 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHh
Confidence 466889999999999999999999998877665333588899999999999985
No 243
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.72 E-value=4.3e+02 Score=30.23 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=107.7
Q ss_pred HHhHHHHHHHHHHcCCCChHHHHHHHHHHHh--cCCCCHHHHHHHH---HHHHHhhcccccccccCCCCChHHHHHHHHH
Q 016423 111 KKRQMEIKELMEKLKTPSDAQLIQIAIDDLN--NSTLSLEDSQRAL---QELLILVEPIDNANGQLNHPDTDIRKISAWI 185 (390)
Q Consensus 111 ~~r~~~L~eal~~~~~~~d~~~Mk~~l~~l~--~~~~s~e~~~~aL---d~Le~lve~IDnAn~lL~s~~~~vR~~Aa~v 185 (390)
.++..++...++.++.++ +|-=.+..+. .+.....+.+..| +.+..+|+-++ .+.+++++..|...
T Consensus 144 k~~~~~v~~~l~hi~~st---lMD~Llkli~~de~~~p~~~Viq~l~d~~li~kll~ll~------ps~~~~~qsna~~~ 214 (838)
T KOG2073|consen 144 KKKDNFVDLFLKHIDIST---LMDFLLKLISTDEPESPRTDVIQWLNDQELIPKLLELLN------PSKDPDVQSNAGQT 214 (838)
T ss_pred HhhhHHHHHHHHHcCccH---HHHHHHHhccccCCCCchHHHHHHHhhHHHHHHHHHHhC------CccccchhHHHHHH
Confidence 345556666666655554 4444444442 1222213333333 34555555433 45668999999999
Q ss_pred HHHHhhC-----ChH-HHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhh---C------------Cccch-HH
Q 016423 186 LGKASQN-----NPL-VQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIR---N------------NLAGQ-EM 241 (390)
Q Consensus 186 Lgta~QN-----Np~-~Q~~~le~g~l~~Ll~LL~s~~--~~vr~kAL~ALSsLiR---~------------~~~a~-~~ 241 (390)
|..+++. .|. .+.++.....+.+|+...-... ..+.+..+..+-.++- + +++.. ..
T Consensus 215 L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~ 294 (838)
T KOG2073|consen 215 LCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISLLNPRRDTVETNSTTTILSQPPSERDP 294 (838)
T ss_pred HHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHhcCcccccccccceeeeecCCccccCc
Confidence 9999999 444 5566666677887776654432 2344444444433311 1 11100 00
Q ss_pred ---HHHcCc----HHHHHHHhcCCCh--------------hHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHH
Q 016423 242 ---FYVEAG----DLMLQDILGNSSF--------------EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 300 (390)
Q Consensus 242 ---f~~~gG----l~~L~~lL~s~~~--------------d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~L 300 (390)
-...+| ++-+..+|..+.. =-+.|.|.+-+|+.|+.. .+......+...+++..+
T Consensus 295 ~~~~~~l~~~~p~L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~eliaelL~~----~~~~l~~el~~~~~~~r~ 370 (838)
T KOG2073|consen 295 IVLNELLGAMEPRLGDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIVELIAELLHC----SNMTLLNELRAEGIAERL 370 (838)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhccCCCcchHHHHHHHHHHHHhcc----CcHHHHhHHhhhhhHHHH
Confidence 001122 2333444443211 124688999999999863 466667778888888888
Q ss_pred HHhhcCC--ChhHHHHHHHHHHHHH
Q 016423 301 VDLTASA--DLDLQEKALAAIKNLL 323 (390)
Q Consensus 301 v~lL~~~--d~~v~EkAL~aL~~L~ 323 (390)
+.++... +.-+.-.+-.++....
T Consensus 371 lD~f~~y~~nN~lh~~~e~~I~~~~ 395 (838)
T KOG2073|consen 371 LDLFFEYPWNNFLHAQVESCIVENL 395 (838)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHhh
Confidence 8888664 2223334444444433
No 244
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=49.66 E-value=51 Score=30.63 Aligned_cols=148 Identities=18% Similarity=0.113 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhCCccchHH---------------HHHcCcHHHHHHHhcC---CC-hhHHHHHHHHHHHHHHhhhhh
Q 016423 220 EAVKALYTVSSLIRNNLAGQEM---------------FYVEAGDLMLQDILGN---SS-FEIRLHRKAVSLVGDLAKCQL 280 (390)
Q Consensus 220 vr~kAL~ALSsLiR~~~~a~~~---------------f~~~gGl~~L~~lL~s---~~-~d~klr~KA~~LLs~L~~~~l 280 (390)
..-.+.--|||+.|....+... +.....+..|++++.. .+ ....-.-..+.++.|+++
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~--- 87 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ--- 87 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC---
Confidence 3445555677776654333211 2223356677777654 10 011123456777778774
Q ss_pred hcCCCCCchhhhhc--Cc--hHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHHhhhh
Q 016423 281 ENMHKVEPPLFRDR--FF--LKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLE 356 (390)
Q Consensus 281 ~~~~~~~~~~l~~~--g~--v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~el~~~ 356 (390)
.+..+..|.+. +. +..|+.++.+.+.--+.-++.+|.++.-....+...+... .++.|---+--++..
T Consensus 88 ---~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~-----~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 88 ---LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDD-----EVDILPYLLLPLAGP 159 (192)
T ss_pred ---CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCch-----hhhhHHHHHhhccCC
Confidence 45566666543 34 7888888888887788889999999886544443333211 033333334445443
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 016423 357 EDQRDYAMDVEALRREVELIFFRK 380 (390)
Q Consensus 357 e~~~ey~~dl~~lr~e~~~~~~~~ 380 (390)
| +.+. +|.+.+=.|+|....+|
T Consensus 160 E-e~d~-ee~~~lp~~LQ~L~~dK 181 (192)
T PF04063_consen 160 E-ELDE-EEMEKLPPELQLLPPDK 181 (192)
T ss_pred C-cCCH-HHHHcCCHHHhhcCCCC
Confidence 3 2222 45666777888766666
No 245
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=48.31 E-value=2.1e+02 Score=31.72 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=55.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhc
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~ 325 (390)
..|-+.+..+ ..|..++.||++++. .++...-.+.+..+++.|..+|..+ +..+...|+.+|..|+.+
T Consensus 73 ~~l~~~~~~~----~~Rl~~L~Ll~~~v~-----~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 73 DKLNDYFVKP----SYRLQALTLLGHFVR-----SQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred HHHHHHHcCc----hhHHHHHHHHHHHHh-----cCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 4455555543 357899999999996 5677777889999999999999887 788889999999999875
No 246
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=48.04 E-value=1.7e+02 Score=29.34 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=71.1
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhc------------CcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhhCCc
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLEL------------GALSKLMKMVKSS-----FVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~------------g~l~~Ll~LL~s~-----~~~vr~kAL~ALSsLiR~~~ 236 (390)
.++---+-|+.++..+..+|+.+++.+++- -.|+.+..+|... +.-++.--|--|+.-+-++|
T Consensus 109 ~dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p 188 (312)
T PF04869_consen 109 LDPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECP 188 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-H
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCH
Confidence 344455889999999999999999998774 2255566666542 22345556777888889999
Q ss_pred cchHHHHHcC-cHHHHHHHhc-CCChhHHHHHHHHHHHHHHh
Q 016423 237 AGQEMFYVEA-GDLMLQDILG-NSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 237 ~a~~~f~~~g-Gl~~L~~lL~-s~~~d~klr~KA~~LLs~L~ 276 (390)
.+...|...+ .++.|+.... .+..++-+|-=++++|.-..
T Consensus 189 ~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 189 DAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp HHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHH
Confidence 9999999886 5899999754 33456667777777776544
No 247
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.15 E-value=1.7e+02 Score=32.93 Aligned_cols=167 Identities=11% Similarity=0.142 Sum_probs=99.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhC-ChH----HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCC----ccch
Q 016423 169 GQLNHPDTDIRKISAWILGKASQN-NPL----VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN----LAGQ 239 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QN-Np~----~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~----~~a~ 239 (390)
+-|+.+|..||..|+.++-.+--= .|. -.+.+++.. ...|.+||.++-+.+|.-|+--++-++..+ |++.
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 456788999999999988776321 222 234444433 567889999888889988877777665432 2210
Q ss_pred HHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHH
Q 016423 240 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 319 (390)
Q Consensus 240 ~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL 319 (390)
-..-+..+.+-+..+ +...+|.-+.--|.+++. +|.... +.+.++ +++-..|......++-++...|
T Consensus 260 ----~~~ll~kI~d~~a~d-t~s~VR~svf~gl~~~l~------np~sh~-~le~~L-pal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 260 ----LIDLLKKITDELAFD-TSSDVRCSVFKGLPMILD------NPLSHP-LLEQLL-PALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred ----HHHHHHHHHHHhhhc-cchheehhHhcCcHHHHc------Cccchh-HHHHHH-HhcchhhhccchhHHHHHHHHH
Confidence 011122233333323 233466677777777773 332222 223333 3555666666678888887777
Q ss_pred HHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHH
Q 016423 320 KNLLQLRTTEALVLKDFCGLDTALERLRQQLQE 352 (390)
Q Consensus 320 ~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~e 352 (390)
.-|-.+. ..+.+. -|.++..+.+|......
T Consensus 327 l~ik~vr--a~~f~~-I~~~d~~l~~L~~d~~~ 356 (1005)
T KOG1949|consen 327 LKIKAVR--AAKFWK-ICPMDHILVRLETDSRP 356 (1005)
T ss_pred HHHHhhh--hhhhhc-cccHHHHHHHHhccccH
Confidence 7766542 445554 78888888888655443
No 248
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=46.71 E-value=53 Score=26.28 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=41.9
Q ss_pred hhcCchHHHHHhhcC-CChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHH
Q 016423 292 RDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 351 (390)
Q Consensus 292 ~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~ 351 (390)
.+..+++.+..++.+ .+.++++..+.|+.+++. .+...+ ..|....+..|+.-..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~---~~~~~i--~SGW~~if~il~~aa~ 69 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQ---SRGENI--KSGWKVIFSILRAAAK 69 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH---HhHHHH--HhccHHHHHHHHHHHh
Confidence 355677788887644 589999999999999997 345555 4788888888866555
No 249
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.61 E-value=1.9e+02 Score=34.17 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=76.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc---chHHHHHcC--cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhh
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA---GQEMFYVEA--GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 280 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~---a~~~f~~~g--Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l 280 (390)
+..|+.+|++++-.+|-..+.++++++-+.-. ......... -+..|..-+.+- ...+|.|++.....|+.+
T Consensus 314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv--sa~vRskVLqv~~~l~~~-- 389 (1251)
T KOG0414|consen 314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV--SAYVRSKVLQVFRRLFQQ-- 389 (1251)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHc--
Confidence 56777888888777888888888888765222 111222222 345555555553 678999999999999963
Q ss_pred hcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhH
Q 016423 281 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 329 (390)
Q Consensus 281 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~ 329 (390)
+ ..... ..+.++..++.-|...+.-|+.+|+..+..++...|..
T Consensus 390 ---~-s~p~~-~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs 433 (1251)
T KOG0414|consen 390 ---H-SIPLG-SRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFS 433 (1251)
T ss_pred ---c-CCCcc-HHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCch
Confidence 1 11111 12355666666777778899999999999999876643
No 250
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=46.60 E-value=65 Score=28.30 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHH-HH
Q 016423 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-VV 301 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~-Lv 301 (390)
..+-.|+-+|+..+.+.. ..+..|..=|..+ .+++++..|+.+|-.++. +....+...+.+.+++.. |+
T Consensus 20 ~~ileicD~In~~~~~~k-----~a~ralkkRl~~~-~n~~v~l~aL~LLe~~vk----NCG~~fh~eiask~Fl~e~L~ 89 (141)
T cd03565 20 GLNMEICDIINETEDGPK-----DAVRALKKRLNGN-KNHKEVMLTLTVLETCVK----NCGHRFHVLVAKKDFIKDVLV 89 (141)
T ss_pred HHHHHHHHHHhCCCCcHH-----HHHHHHHHHHccC-CCHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHhhhHHHH
Confidence 455667777776433322 3345666666532 267789999999999986 456677777888899997 99
Q ss_pred HhhcC---CChhHHHHHHHHHHHHHh
Q 016423 302 DLTAS---ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 302 ~lL~~---~d~~v~EkAL~aL~~L~~ 324 (390)
.++.. .+..|+.+++..+.+...
T Consensus 90 ~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 90 KLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 99964 245899999988887764
No 251
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=46.55 E-value=2.4e+02 Score=27.51 Aligned_cols=147 Identities=18% Similarity=0.146 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHH
Q 016423 152 RALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSS 230 (390)
Q Consensus 152 ~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSs 230 (390)
..+-+|-.+++.+|..+. +. +++.+ ..+|..|+.+|.++. .+.+..++....... .+...-.--.+++
T Consensus 108 ~~la~LP~ll~~~d~~~~-i~-~~~~~-~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~ 176 (262)
T PF14225_consen 108 LLLALLPRLLHAFDDPNP-IQ-PDQEC-IEIAEALAQVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSY 176 (262)
T ss_pred HHHHHHHHHHHHhccccc-cc-ccHHH-HHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 345566666666664330 11 22334 466788888875432 334555555554322 1111222223344
Q ss_pred HhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChh
Q 016423 231 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD 310 (390)
Q Consensus 231 LiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~ 310 (390)
+...|-|.. ...-+..|.++|.+. ..-+|.+++.+|..|+.. -+.... ...+++..+..+|.. +
T Consensus 177 l~~~f~P~~----~~~~l~~Ll~lL~n~--~~w~~~~~L~iL~~ll~~------~d~~~~-~~~dlispllrlL~t---~ 240 (262)
T PF14225_consen 177 LREAFFPDH----EFQILTFLLGLLENG--PPWLRRKTLQILKVLLPH------VDMRSP-HGADLISPLLRLLQT---D 240 (262)
T ss_pred HHHHhCchh----HHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhcc------ccCCCC-cchHHHHHHHHHhCC---c
Confidence 444442221 223456788888765 456899999999999952 222222 455688888888876 4
Q ss_pred HHHHHHHHHHHHHhc
Q 016423 311 LQEKALAAIKNLLQL 325 (390)
Q Consensus 311 v~EkAL~aL~~L~~~ 325 (390)
....|+..|...++.
T Consensus 241 ~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 241 LWMEALEVLDEIVTR 255 (262)
T ss_pred cHHHHHHHHHHHHhh
Confidence 677788888777754
No 252
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=46.54 E-value=3.4e+02 Score=28.66 Aligned_cols=163 Identities=16% Similarity=0.126 Sum_probs=95.6
Q ss_pred hHHHHHhHhhcCCCCCccccccccCCCCHHHHHHhHHHHHHHHHHc---CCC-ChHHHHHHHHHHHhcCCC-----CHHH
Q 016423 79 IDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKL---KTP-SDAQLIQIAIDDLNNSTL-----SLED 149 (390)
Q Consensus 79 ~~gLLkwsi~~s~~~~~~~~~~~~~~~s~e~l~~r~~~L~eal~~~---~~~-~d~~~Mk~~l~~l~~~~~-----s~e~ 149 (390)
+.-|=+|..+|++--+-.. -..+ .++.|-+.+=++ +.| +--..--+.+.+|..... +.++
T Consensus 19 ~e~l~~~n~k~aa~~kFd~-------a~~d----~r~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q 87 (532)
T KOG4464|consen 19 EEFLRKYNFKHAAVFKFDS-------ANSD----DRKELGERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQ 87 (532)
T ss_pred HHHHHHhhhhhhhhhcccc-------cchh----hHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchH
Confidence 5567789988877765311 1222 244444443322 222 222244556666654332 2223
Q ss_pred HHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCH-------H-HH
Q 016423 150 SQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-------E-EA 221 (390)
Q Consensus 150 ~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~-------~-vr 221 (390)
-...|-.|.++=. +-+++=..++-.|-..|..||.+++-+.+.+|+.+++.....++++.+-..-. . .-
T Consensus 88 ~~~~ll~~A~ls~---~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~d 164 (532)
T KOG4464|consen 88 LCQKLLALAELSS---NENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFD 164 (532)
T ss_pred HHHHHHHHHHhcc---ccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhH
Confidence 2322222222211 11123345666899999999999999999999999999888888888753311 1 13
Q ss_pred HHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcC
Q 016423 222 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 257 (390)
Q Consensus 222 ~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s 257 (390)
.+.|+-++++=. ..-...+++.+|++.+...|.+
T Consensus 165 lrLLflltale~--~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 165 LRLLFLLTALET--DHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred HHHHHHHHHhhH--HHHHHHHHHhcccHHHHHHhhc
Confidence 366666666532 1123456789999999999864
No 253
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.54 E-value=3.3e+02 Score=27.63 Aligned_cols=165 Identities=19% Similarity=0.173 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHH-----cCcHHHHHH
Q 016423 179 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-----EAGDLMLQD 253 (390)
Q Consensus 179 R~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~-----~gGl~~L~~ 253 (390)
-..|+.++.+.+|+ +.+++.++.. .+..++.++.++......-..-.+||+.|.-......... ..|+.-+..
T Consensus 59 ~~~a~~alVnlsq~-~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~ 136 (353)
T KOG2973|consen 59 AEPAATALVNLSQK-EELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLAR 136 (353)
T ss_pred ccHHHHHHHHHHhh-HHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHH
Confidence 56799999999887 6788888877 7777888887765455666666788888775443222221 135544444
Q ss_pred HhcCCChhHHH-HHHHHHHHHHHhhhhh------h-cCC--------CCCchhhhhcCchHHHHH---------------
Q 016423 254 ILGNSSFEIRL-HRKAVSLVGDLAKCQL------E-NMH--------KVEPPLFRDRFFLKSVVD--------------- 302 (390)
Q Consensus 254 lL~s~~~d~kl-r~KA~~LLs~L~~~~l------~-~~~--------~~~~~~l~~~g~v~~Lv~--------------- 302 (390)
.+.+++.+.+. --..++++.+|.+... + +.- .+....++..|++..+-+
T Consensus 137 ~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~ 216 (353)
T KOG2973|consen 137 AFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDES 216 (353)
T ss_pred HHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcch
Confidence 44433211101 1124455666654310 0 000 011122334444444333
Q ss_pred ---------h---------------------h-----cCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHH
Q 016423 303 ---------L---------------------T-----ASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 303 ---------l---------------------L-----~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
. | ..+|++++-+.+.||..|.... .-|+.++ ..|..+.+.-|+
T Consensus 217 ~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR-~kgvYpilRElh 294 (353)
T KOG2973|consen 217 INLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLR-SKGVYPILRELH 294 (353)
T ss_pred HHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHH-hcCchHHHHHHh
Confidence 1 1 1247899999999999888753 4678887 677767765443
No 254
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=44.74 E-value=2.8e+02 Score=26.29 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=93.9
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcC-c-HHHHHHhhcC----CCHHHHHHHHHHHHHHhhCCccchHHHHHc
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELG-A-LSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVE 245 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g-~-l~~Ll~LL~s----~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~ 245 (390)
.+=+++-+.-+..++--++-+.+.++ .+...+ + ...+..++.. .+...+.-++..++|+..+ +.+...+..+
T Consensus 73 ~~Wp~~~~fP~lDLlRl~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~ 150 (268)
T PF08324_consen 73 LSWPPESRFPALDLLRLAALHPPASD-LLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPGRQLLLSH 150 (268)
T ss_dssp CCS-CCC-HHHHHHHHHHCCCHCHHH-HHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCCHHHHHCT
T ss_pred HhCCCccchhHHhHHHHHHhCccHHH-HHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-CccHHHHHhc
Confidence 33334446777888877777644433 333332 2 3444444332 2356788899999999886 4445554433
Q ss_pred CcHHHHHHHhc---CCC--hhHHHHHHHHHHHHHHhhhhhhcC-CCCCchhhhhcCchHHHHHhhcC--CChhHHHHHHH
Q 016423 246 AGDLMLQDILG---NSS--FEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALA 317 (390)
Q Consensus 246 gGl~~L~~lL~---s~~--~d~klr~KA~~LLs~L~~~~l~~~-~~~~~~~l~~~g~v~~Lv~lL~~--~d~~v~EkAL~ 317 (390)
.+ ..+...+. ... .+..+|.-++.++.|++....... +.+ ....++..+++.+.. .|.+..-.++-
T Consensus 151 ~~-~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~-----~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 151 FD-SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEE-----WQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HH-TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CC-----HHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred cc-chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 32 12333322 221 156789999999999986432111 111 112345566664433 48999999999
Q ss_pred HHHHHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 318 AIKNLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 318 aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
|+++|+..++...+..+ ..++...+...++
T Consensus 225 AlGtL~~~~~~~~~~~~-~l~~~~~~~~~~~ 254 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAK-SLDVKSVLSKKAN 254 (268)
T ss_dssp HHHHHHCCSHHHHHHCC-CCTHHHHHHHHHH
T ss_pred HHHHHhccChhHHHHHH-HcChHHHHHHHHh
Confidence 99999976644433322 3445555554443
No 255
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=44.71 E-value=1.4e+02 Score=32.66 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHhhccccccc--------------------ccCC-------CCChHHHHHHHHHHHHHhhC--ChHH
Q 016423 146 SLEDSQRALQELLILVEPIDNAN--------------------GQLN-------HPDTDIRKISAWILGKASQN--NPLV 196 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnAn--------------------~lL~-------s~~~~vR~~Aa~vLgta~QN--Np~~ 196 (390)
.++-|+.||++|=++||+-..-. .+.. -++.-||..|..+|+..+-| .+.+
T Consensus 444 ~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~ 523 (898)
T COG5240 444 DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS 523 (898)
T ss_pred CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc
Confidence 56889999999999998854432 1111 26778999999999887766 5556
Q ss_pred HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 016423 197 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 231 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsL 231 (390)
|+.+ ...|-+.+++.++++|-.|.+++-++
T Consensus 524 ~~sv-----~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 524 PQSV-----ENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHH-----HHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 6653 34566778888889999999999887
No 256
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=44.70 E-value=3.4e+02 Score=33.03 Aligned_cols=145 Identities=21% Similarity=0.197 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHHHHhh---CChHHHHHHHhcCcHHHHHHhhcCC---C-----HHHHHHHHHHHHHHhhCCccc-----
Q 016423 175 DTDIRKISAWILGKASQ---NNPLVQKQVLELGALSKLMKMVKSS---F-----VEEAVKALYTVSSLIRNNLAG----- 238 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~Q---NNp~~Q~~~le~g~l~~Ll~LL~s~---~-----~~vr~kAL~ALSsLiR~~~~a----- 238 (390)
+-..-..|..|||.++. +|-+.-..++.. .-+.+.-+++. + .+.-...+|.++.++|++.-.
T Consensus 1134 g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~--~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~ 1211 (1692)
T KOG1020|consen 1134 GMATVVEAVSCLGSLATKRTDGAKVVKACFSC--YLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSND 1211 (1692)
T ss_pred chHHHHHHHHHHHHHHhhhccchHHHHHHHHH--HHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCC
Confidence 33444567788888876 565554444432 22233333322 1 134568999999999975321
Q ss_pred ------hHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhH-
Q 016423 239 ------QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDL- 311 (390)
Q Consensus 239 ------~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v- 311 (390)
.-.+...+-+.+|.-+.+.. +..+|++|+..++.+|- .++. .+.+..+...+...|+..+.+.
T Consensus 1212 g~~~~~~~~~~~e~v~~lL~~f~k~~--~~~lR~~al~~Lg~~ci-----~hp~---l~~~~~v~nly~~ila~~n~~~~ 1281 (1692)
T KOG1020|consen 1212 GKTFLQEGETLKEKVLILLMYFSKDK--DGELRRKALINLGFICI-----QHPS---LFTSREVLNLYDEILADDNSDIK 1281 (1692)
T ss_pred CccchhhhhhHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHh-----hCch---hhhhHHHHHHHHHHHhhhcccHH
Confidence 11233333444555554544 57799999999999995 2333 3555666777777777764433
Q ss_pred -HHHHHHHHHHHHhcChhHHHHHH
Q 016423 312 -QEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 312 -~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
.-.++..+..++. +..+.++
T Consensus 1282 ~ki~~l~n~~~yL~---eee~~l~ 1302 (1692)
T KOG1020|consen 1282 SKIQLLQNLELYLL---EEEKKLR 1302 (1692)
T ss_pred HHHHHHHHHHHHHH---HHHHHHH
Confidence 4666777776665 3444554
No 257
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=44.69 E-value=2.2e+02 Score=25.92 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=51.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.++.++++.-+++..+|..|+.-|+.++|..--.... -++.|+.+..++ +..++.+|..++..+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~-----cvp~lIAL~ts~--~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ-----CVPTLIALETSP--NPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH-----HHhHhhhhhCCC--ChHHHHHHHHHHHHHHH
Confidence 4788889888888899999999999999863222222 357777777775 67799999999999984
No 258
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=44.66 E-value=49 Score=35.57 Aligned_cols=108 Identities=11% Similarity=0.065 Sum_probs=62.9
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 250 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~---~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~ 250 (390)
.+..-+..+..+||++-. ...++.|..++... +..+|..|++|+..+...+|.-. .++
T Consensus 502 ~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~ 562 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REI 562 (618)
T ss_dssp T-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHH
T ss_pred cCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHH
Confidence 444566667777777722 13688888888776 35689999999998866655432 346
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHH
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKA 315 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkA 315 (390)
|..++.+...+..+|.-|..+|-.- +| ...++..+...+..+ +..|.--+
T Consensus 563 l~~I~~n~~e~~EvRiaA~~~lm~~--------~P-------~~~~l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 563 LLPIFMNTTEDPEVRIAAYLILMRC--------NP-------SPSVLQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp HHHHHH-TTS-HHHHHHHHHHHHHT------------------HHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHhcCCCCChhHHHHHHHHHHhc--------CC-------CHHHHHHHHHHHhhCchHHHHHHH
Confidence 7777776655677777665444321 22 235566677777554 44444333
No 259
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=44.64 E-value=5.3e+02 Score=29.41 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhCCccchHHHHH-------cCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcC
Q 016423 223 KALYTVSSLIRNNLAGQEMFYV-------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 295 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~-------~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g 295 (390)
.++-||+++.++++....-.-+ .+....+...|.-..-...+|.++-|.++.++-. -.++..+
T Consensus 665 ~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~----lg~~vlP------ 734 (980)
T KOG2021|consen 665 HILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPI----LGNKVLP------ 734 (980)
T ss_pred HHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHh----cchhhhc------
Confidence 7888999999997654311111 2344555555553322334788888999988742 1222222
Q ss_pred chHHHH-HhhcCCChhHHHHHHHHHHHHHhcCh-hHHHHHHhhCCcHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 016423 296 FLKSVV-DLTASADLDLQEKALAAIKNLLQLRT-TEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREV 373 (390)
Q Consensus 296 ~v~~Lv-~lL~~~d~~v~EkAL~aL~~L~~~~~-~~r~~~~~~~gL~~~L~~Lr~~l~el~~~e~~~ey~~dl~~lr~e~ 373 (390)
+++.++ .+|++.|..=.--.+..+.+|.+.-. +|-+.+. -=+-+++.+..+.+..-....+...-++.. .+|++.
T Consensus 735 fipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~iln--qmlppll~rIfsvi~r~a~p~dt~aa~ek~-~lrksy 811 (980)
T KOG2021|consen 735 FIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILN--QMLPPLLNRIFSVIERIAKPIDTAAAAEKI-LLRKSY 811 (980)
T ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccCCCCChhHHHHHH-HHHHHH
Confidence 334444 44555565433345666777765311 2222221 113566666666666544455556665555 799999
Q ss_pred HHHHHHHhhhccccc
Q 016423 374 ELIFFRKLDDSGSNM 388 (390)
Q Consensus 374 ~~~~~~~~~~~~~~~ 388 (390)
..+.|.+++...+-.
T Consensus 812 ~~fLqtftn~g~~si 826 (980)
T KOG2021|consen 812 CTFLQTFTNNGVTSI 826 (980)
T ss_pred HHHHHHHhcCCccee
Confidence 999999998765543
No 260
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=44.02 E-value=1.8e+02 Score=25.92 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
.+.++|..|..+||.+-.=.|.-.+.+....- ... ...........+ ...+..+..+.|+-..-+..|+
T Consensus 23 ~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~~l-----~~~~~~~~~ee~y~~vvi~~L~ 92 (160)
T PF11865_consen 23 QSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDISL-----PMMGISPSSEEYYPTVVINALM 92 (160)
T ss_pred CCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhhHH-----hhccCCCchHHHHHHHHHHHHH
Confidence 45789999999999997777755543222211 000 000011111111 2234445778888888899999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.+|++++ -...+..++..+.+++.. .+....+.+ .-+++.++..+...+...+|-.+.-|..|+.
T Consensus 93 ~iL~D~s-Ls~~h~~vv~ai~~If~~----l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 93 RILRDPS-LSSHHTAVVQAIMYIFKS----LGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHhhh-hHHHHHHHHHHHHHHHHh----cCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999774 333556777777777742 122212222 3567777777776666888888777776664
No 261
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=42.97 E-value=23 Score=30.05 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=27.2
Q ss_pred CCCCCchhhhhcCchHHHHHhhcCCChhHHH
Q 016423 283 MHKVEPPLFRDRFFLKSVVDLTASADLDLQE 313 (390)
Q Consensus 283 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~E 313 (390)
..|++.+.|++.|+++.|+.+|.|+|.|+.-
T Consensus 75 ~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 75 TAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred CChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4788899999999999999999999887653
No 262
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=42.63 E-value=2.5e+02 Score=26.04 Aligned_cols=127 Identities=10% Similarity=0.050 Sum_probs=74.9
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHH---------------HhcCcHHHHHHhhcCC-----C-HHHHHHHHHHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQV---------------LELGALSKLMKMVKSS-----F-VEEAVKALYTVSS 230 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~---------------le~g~l~~Ll~LL~s~-----~-~~vr~kAL~ALSs 230 (390)
..+....--.+|.+|+|++.....+...+ .+...+..|+..+... + ..---...+-++|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 34455566778888888888766554322 2233678888888651 1 1223466777888
Q ss_pred HhhCCccchHHHHHcC-c---HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh---cCchHHHHHh
Q 016423 231 LIRNNLAGQEMFYVEA-G---DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD---RFFLKSVVDL 303 (390)
Q Consensus 231 LiR~~~~a~~~f~~~g-G---l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~---~g~v~~Lv~l 303 (390)
+.+. +.+...|.... + +..|..++.+. +.--|.=++.+|.|.|.+ .+..+.+.. -++++.|.-.
T Consensus 85 lS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrNccFd------~~~H~~LL~~~~~~iLp~LLlP 155 (192)
T PF04063_consen 85 LSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRNCCFD------TDSHEWLLSDDEVDILPYLLLP 155 (192)
T ss_pred hcCC-HHHHHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHHhhcc------HhHHHHhcCchhhhhHHHHHhh
Confidence 8665 77788887543 2 34455555554 332355577899999952 222233333 3566666655
Q ss_pred hcCC
Q 016423 304 TASA 307 (390)
Q Consensus 304 L~~~ 307 (390)
|..+
T Consensus 156 LaGp 159 (192)
T PF04063_consen 156 LAGP 159 (192)
T ss_pred ccCC
Confidence 5543
No 263
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.44 E-value=4.9e+02 Score=29.96 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=88.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccch----HHHH-
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ----EMFY- 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~----~~f~- 243 (390)
..+..+.+.+|..|..-|.....+-.+++ .+...+++...+.+|.+++.=+=-.|+.++-+||--+|... .+++
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYL 812 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 46677888999999999999988874444 45667889999999998775555566666667765555320 0111
Q ss_pred -----------------------HcC----c-HHHHHHH-hc-CCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh
Q 016423 244 -----------------------VEA----G-DLMLQDI-LG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 293 (390)
Q Consensus 244 -----------------------~~g----G-l~~L~~l-L~-s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~ 293 (390)
..| + ...|... |+ ...++...|.-++..+..|+.-- .--..+.+
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~----a~~vsd~~-- 886 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL----AFQVSDFF-- 886 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH----hhhhhHHH--
Confidence 111 0 1122222 22 11136667777777777777410 00001112
Q ss_pred cCchHHHHHhhcCC-ChhHHHHHHHHHHHHHh
Q 016423 294 RFFLKSVVDLTASA-DLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 294 ~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~ 324 (390)
+.+...++.+...+ ...++..|...+..+..
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 23444555555555 57788888888877775
No 264
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=42.32 E-value=1.1e+02 Score=28.25 Aligned_cols=127 Identities=16% Similarity=0.074 Sum_probs=69.6
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 246 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.=++++.+-|... +...+.=|..-+.+|+.. ...+...+.+ .-++..+-..|.+.|.++...+|.+|..|+..
T Consensus 38 ~~Lpif~dGL~Et--~~Py~flA~~g~~dll~~---~~~~kilPvl--PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRET--EHPYRFLARQGIKDLLER---GGGEKILPVL--PQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhcc--CccHHHHHHHHHHHHHHh---cchhHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3456666666654 223556677777888741 0112222211 23455555667888999999999999999765
Q ss_pred ChhHHHHHHhh-CCcHHHHHHHHHHHHHhhhhhhhhhhHH--HHHHHHHHHHHHHHHHhh
Q 016423 326 RTTEALVLKDF-CGLDTALERLRQQLQEVMLEEDQRDYAM--DVEALRREVELIFFRKLD 382 (390)
Q Consensus 326 ~~~~r~~~~~~-~gL~~~L~~Lr~~l~el~~~e~~~ey~~--dl~~lr~e~~~~~~~~~~ 382 (390)
++.....+.+. -+|.+.++..++... +-.|..+|.. .+.++-.|.-..|.+.=|
T Consensus 111 ~~~vG~aLvPyyrqLLp~ln~f~~k~~---n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLLPVLNLFKNKNV---NLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccc---CCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 44444444332 234445554444332 2334666622 244455555555554433
No 265
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=42.30 E-value=2.4e+02 Score=30.03 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=90.0
Q ss_pred HHHHcCCC-ChHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHhhccccccc----------ccCCCC--ChH
Q 016423 120 LMEKLKTP-SDAQLIQIAIDDLNNST---------LSLEDSQRALQELLILVEPIDNAN----------GQLNHP--DTD 177 (390)
Q Consensus 120 al~~~~~~-~d~~~Mk~~l~~l~~~~---------~s~e~~~~aLd~Le~lve~IDnAn----------~lL~s~--~~~ 177 (390)
.|+.+.++ +|.+++...+..+...+ .+..-|.. .|..|+..+--|+ ..|.++ +..
T Consensus 260 ~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~k---IL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~k 336 (501)
T PF13001_consen 260 LLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEK---ILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSK 336 (501)
T ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHH---HHHHHHHhHHHHhCCccHHHHHhccccCCccccc
Confidence 34444432 67888888888888211 22223332 3445555554443 456666 778
Q ss_pred HHHHHHHHH---HHHhhCChHHHHHHHhcCcHHHHHHhhc--------CCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 178 IRKISAWIL---GKASQNNPLVQKQVLELGALSKLMKMVK--------SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 178 vR~~Aa~vL---gta~QNNp~~Q~~~le~g~l~~Ll~LL~--------s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
+|..+..-+ .....+-+..+-..+....+..+..++. +++...|..+--+|+.|.+..|.... .+.+
T Consensus 337 lk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~--~d~~ 414 (501)
T PF13001_consen 337 LKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS--KDLS 414 (501)
T ss_pred cchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc--ccHH
Confidence 999988888 7776665444443333323333333332 22356899999999999999887631 1123
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
-+..|.+.|.++ +..++...--+|+.|+.
T Consensus 415 li~~LF~sL~~~--~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 415 LIEFLFDSLEDE--SPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHhhCc--chHHHHHHHHHHHHHHH
Confidence 344455555444 45577788888888875
No 266
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=42.21 E-value=84 Score=28.95 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=49.9
Q ss_pred ChHHHHHHHhcCcHHHHHHhhcCC---C---------------HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHH
Q 016423 193 NPLVQKQVLELGALSKLMKMVKSS---F---------------VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 254 (390)
Q Consensus 193 Np~~Q~~~le~g~l~~Ll~LL~s~---~---------------~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~l 254 (390)
+..-|+.+.+.|++..++.+++.. . ..+-..+..-|..++|+|+.++..+..+=++- +..+
T Consensus 32 ~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~~l-~~~~ 110 (207)
T PF01365_consen 32 NRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLDFL-ISIF 110 (207)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH------H
T ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH-HHHH
Confidence 345788888899999999998532 1 13345677788889999999999987663322 2222
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+... ...-.-+.-+++.+.. .+++....+.+.. ++.+++++.... -+..-+..|.+|...
T Consensus 111 ~~~~---~~~~~~~~d~l~~i~~-----dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 111 MQLQ---IGYGLGALDVLTEIFR-----DNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCVC 170 (207)
T ss_dssp HCCC---H-TTHHHHHHHHHHHT-----T------------------------------------------
T ss_pred HHhh---ccCCchHHHHHHHHHH-----CcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhccc
Confidence 2222 1111246667777774 5677777766554 888888887743 334455666666543
No 267
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.69 E-value=1.3e+02 Score=33.78 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=67.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHH-HHHhc--CcHHHHHHh----hcCCCHHHHHHHHHHHHHHhhCC---ccc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQK-QVLEL--GALSKLMKM----VKSSFVEEAVKALYTVSSLIRNN---LAG 238 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~-~~le~--g~l~~Ll~L----L~s~~~~vr~kAL~ALSsLiR~~---~~a 238 (390)
.+|+|++-.+|..-..+.|+++-.- .|+ +..++ .-+..|+.+ +.+..+-+|.||+..+++++.-+ +..
T Consensus 306 ~LLdses~tlRc~~~EicaN~V~~~--~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~ 383 (1128)
T COG5098 306 ELLDSESFTLRCCFLEICANLVEHF--KKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR 383 (1128)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHH--hcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccch
Confidence 5788999999999888888887541 111 12221 123344444 45556678999999999998643 223
Q ss_pred hHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 239 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 239 ~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
...| .....+.|++. ..-+|++|..+++-|+.
T Consensus 384 r~ev-----~~lv~r~lqDr--ss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 384 RHEV-----IRLVGRRLQDR--SSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHH-----HHHHHHHhhhh--hHHHHHHHHHHHHHHHh
Confidence 3333 45666777776 44589999999999986
No 268
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=40.25 E-value=1.6e+02 Score=29.89 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=72.9
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHh-hc---CC---C--HHHHHHHHHHHHHHhhCCccchHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKM-VK---SS---F--VEEAVKALYTVSSLIRNNLAGQEMF 242 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~L-L~---s~---~--~~vr~kAL~ALSsLiR~~~~a~~~f 242 (390)
..++++|..+...+.++.+.. ++.++.+ .+..++++| +. .. + ...-+.-++.|+..+|.+|.-...|
T Consensus 21 d~p~g~r~~~l~f~~~Ll~~~---~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~~lc~~i~~~P~ll~~f 97 (353)
T PF10257_consen 21 DYPPGMRQEVLKFFSRLLSQS---QQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLNTLCSKIRKDPSLLNFF 97 (353)
T ss_pred cCChHHHHHHHHHHHHHHHhc---ccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 456778888888888887762 3334444 445566666 42 11 1 1234588999999999999888888
Q ss_pred HHcCc--------------------------HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh-cC
Q 016423 243 YVEAG--------------------------DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RF 295 (390)
Q Consensus 243 ~~~gG--------------------------l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~-~g 295 (390)
...++ +..|+..+++.+ . +-.+|.-.+-.+++ +...++.....+.+ ..
T Consensus 98 f~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~eg-~--ig~~Are~LLll~~--l~~~~~~~~~~i~~~S~ 172 (353)
T PF10257_consen 98 FESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSEG-R--IGDFAREGLLLLMS--LASEDPALAQYIVEHSD 172 (353)
T ss_pred hcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcCc-H--HHHHHHHHHHHHHh--CCCCCcHHHHHHHHcch
Confidence 76553 346666666652 2 33344444444442 10124445555665 66
Q ss_pred chHHHHHhh
Q 016423 296 FLKSVVDLT 304 (390)
Q Consensus 296 ~v~~Lv~lL 304 (390)
+|+.+..-|
T Consensus 173 fc~~latgL 181 (353)
T PF10257_consen 173 FCPVLATGL 181 (353)
T ss_pred hHHHHHHHH
Confidence 776665444
No 269
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=39.86 E-value=82 Score=31.52 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=39.1
Q ss_pred CCCchhhhhcC--chHHHHHhhcCC---ChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 285 KVEPPLFRDRF--FLKSVVDLTASA---DLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 285 ~~~~~~l~~~g--~v~~Lv~lL~~~---d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
+.....+...+ ++..|+++++.+ ..+++..|+.+|.+|+.....+.+.++
T Consensus 253 ~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 253 SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34455565555 999999999886 468999999999999998766666665
No 270
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=39.59 E-value=33 Score=21.39 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC
Q 016423 177 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 177 ~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s 215 (390)
.||..|+++||.+ + +|. +++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~-~-~~~---------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQL-G-DEE---------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHc-C-CHh---------HHHHHHHHhcC
Confidence 5899999999988 2 222 45666666654
No 271
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=39.15 E-value=99 Score=26.10 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=29.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
+|+.|++-|.+++.+|...|+-.|-..|-.. ...+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 4889999999988899999988887777665 4444443
No 272
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.64 E-value=2.2e+02 Score=32.00 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHH--cCcHHHHHHHhcC
Q 016423 180 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGN 257 (390)
Q Consensus 180 ~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~--~gGl~~L~~lL~s 257 (390)
+.+...+.+.++-|...++.+++.-+++.+-.++..+++..++.++..+++|.=+ |.....|+- ..|.+.....+..
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHh
Confidence 3466777778788888888888888888877777777778899999999999755 555566553 3467666666655
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhcCCCCCch-hhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 258 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 258 ~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~-~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
. +.++..-++..+.-+++ ..+..++ ...-..+...++.++.+.+..+|-..+....++...
T Consensus 639 ~--~E~~~lA~a~a~a~I~s-----v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 639 A--DEKFELAGAGALAAITS-----VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred h--hhHHhhhccccccchhh-----cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 2 56666666665554553 2333344 445567777888888888888888888877776653
No 273
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.42 E-value=1.2e+02 Score=32.28 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=53.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchH-HHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE-MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~-~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
++..|-+.+.+.+..++.-||+.|=.++.|+..... ++.+.+-+.-++.+...+..+.++|.|++.||..=-
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 344555666665567888888888889999888777 555666666677777755357889999999986543
No 274
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=37.94 E-value=4.3e+02 Score=26.46 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=84.4
Q ss_pred HHHHHHhcCcHHHHHHhhcC--------C-------------CH--HHHHHHHHHHHHHhhCCccc--------------
Q 016423 196 VQKQVLELGALSKLMKMVKS--------S-------------FV--EEAVKALYTVSSLIRNNLAG-------------- 238 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s--------~-------------~~--~vr~kAL~ALSsLiR~~~~a-------------- 238 (390)
+|..+.+.|.+|.|-++++. + ++ .++..-|..+-+++.++...
T Consensus 1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 58889999999999988741 1 11 36777888888888854211
Q ss_pred -----hHHHH--HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC-CCchhhhhcCchHHHHHhhcCC---
Q 016423 239 -----QEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK-VEPPLFRDRFFLKSVVDLTASA--- 307 (390)
Q Consensus 239 -----~~~f~--~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~-~~~~~l~~~g~v~~Lv~lL~~~--- 307 (390)
..... ..|-+..+++.+...+.+.+.|---+.++-+++. ...+ ..+..+.+.|++++++..+-++
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR----g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~ 156 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR----GATSYADQAFLAERGLLEHLVSEILSDGCM 156 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc----CCCcHHHHHHHHhcchHHHHHHHHhcCccc
Confidence 11111 1222455555555444455666666666777764 2334 4566789999999999888665
Q ss_pred ChhHHHHHHHHHHHHHhcCh
Q 016423 308 DLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 308 d~~v~EkAL~aL~~L~~~~~ 327 (390)
+..+..-.-..|+.|..-+.
T Consensus 157 ~~~v~Q~~FDLLGELiK~n~ 176 (303)
T PF12463_consen 157 SQEVLQSNFDLLGELIKFNR 176 (303)
T ss_pred hHHHHHHHHHHHHHHHCCCH
Confidence 45677888888999988643
No 275
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=37.88 E-value=1.5e+02 Score=30.97 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=37.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChH-HHHHHHhcCcHHHHHHhhcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~-~Q~~~le~g~l~~Ll~LL~s 215 (390)
+-|++.++.|.-+|..+++.|+.|.-+ .+..+........|..++.+
T Consensus 52 KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~ 99 (462)
T KOG2199|consen 52 KRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIES 99 (462)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhh
Confidence 346889999999999999999999543 44456666778888888874
No 276
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.80 E-value=1.7e+02 Score=36.21 Aligned_cols=105 Identities=10% Similarity=-0.006 Sum_probs=73.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHH-HHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE-EAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~-vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
+.|.++++.+|..++..+|.++|--+ +..+-......+++-|.+..+. .|.--..|++++-|+.......-....+
T Consensus 883 ~sl~~~~p~~rc~~~ea~arLaq~v~---~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~ 959 (2067)
T KOG1822|consen 883 NSLINPNPKLRCAAAEALARLAQVVG---SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTS 959 (2067)
T ss_pred hhhccCChHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccH
Confidence 56778999999999999999988732 2222233455666666665444 4777888999999885544333334578
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+.+|..+-+++ .++.+|+-++..+..++.
T Consensus 960 v~illal~~Ds-~~p~VqtwSL~al~~i~~ 988 (2067)
T KOG1822|consen 960 VSILLALATDS-TSPVVQTWSLHALALILD 988 (2067)
T ss_pred HHHHHHHhhcC-CCchhhhhHHHHHHHHHc
Confidence 88888877765 466788888888887763
No 277
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=37.79 E-value=2.9e+02 Score=24.39 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHH---------HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQK---------QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~---------~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~ 244 (390)
.+...|.-+.++|-++..|++..-. .+++....+.|++.+.+++..+-..++..+..+++++..-.+.-.+
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777776666543222 2344567788888887766667677888888887765433221111
Q ss_pred cCcHHHHHH-HhcCCChhHHHHHHHHHHHHHHhh
Q 016423 245 EAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 245 ~gGl~~L~~-lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
=-++.+.. ++.+++....-|.-++-.+..++.
T Consensus 114 -~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 114 -VFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred -HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 11333333 566553344566667888888884
No 278
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=37.45 E-value=2.5e+02 Score=31.84 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+++|..+..++ -+.++.+++..|++|+.. .|+ .+..++..+|+-|..++..+-.+|--.|.+|.+.-|
T Consensus 306 ievLe~lS~D~--L~~vk~raL~ti~~lL~~-----kPE-----qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 306 IEVLEELSKDP--LEEVKKRALKTIYDLLTN-----KPE-----QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHcccc--HHHHHHHHHHHHHHHHhC-----CcH-----HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 45555544444 678999999999999963 333 356778889999988888888888888888876433
No 279
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=37.24 E-value=1.7e+02 Score=30.00 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=54.4
Q ss_pred cCCCCHHHHHHHHHHHHHhhccccccc---------------------ccCC---CCChHHHHHHHHHHHHHhhCChHHH
Q 016423 142 NSTLSLEDSQRALQELLILVEPIDNAN---------------------GQLN---HPDTDIRKISAWILGKASQNNPLVQ 197 (390)
Q Consensus 142 ~~~~s~e~~~~aLd~Le~lve~IDnAn---------------------~lL~---s~~~~vR~~Aa~vLgta~QNNp~~Q 197 (390)
++......|..|+--+.-+....+.+. .-|. +..|-+|+.|++.+.+--.-=|+
T Consensus 264 ~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~-- 341 (370)
T PF08506_consen 264 NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK-- 341 (370)
T ss_dssp -TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H--
T ss_pred CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH--
Confidence 455566778888877777766654322 1222 56778999999999999665443
Q ss_pred HHHHhcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 016423 198 KQVLELGALSKLMKMVKSSFVEEAVKALYTV 228 (390)
Q Consensus 198 ~~~le~g~l~~Ll~LL~s~~~~vr~kAL~AL 228 (390)
+.+. +++|.|+..|.+++.-|..-|.+||
T Consensus 342 ~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 342 EQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2233 3799999999998887888887775
No 280
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.16 E-value=6.9e+02 Score=28.31 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH-HHHHHHh
Q 016423 177 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD-LMLQDIL 255 (390)
Q Consensus 177 ~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl-~~L~~lL 255 (390)
.|-.-++..+..+=|-.+ --+ ++ .|.+-.|++-..+.+..||-.++.-|.-+..++..--+.++ .+-. .++.++.
T Consensus 61 RIl~fla~fv~sl~q~d~-e~D-lV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDK-EED-LV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCc-hhh-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHh
Confidence 355556666666633322 222 22 35677788878887788999988888777765444333332 2222 3444444
Q ss_pred cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHH
Q 016423 256 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAI 319 (390)
Q Consensus 256 ~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL 319 (390)
+. .+.+|+.|+++|+++=. ++.. -+..++..+..+++.+ +..||..|+..+
T Consensus 137 -Dr--ep~VRiqAv~aLsrlQ~------d~~d----ee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 137 -DR--EPNVRIQAVLALSRLQG------DPKD----EECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -cc--CchHHHHHHHHHHHHhc------CCCC----CcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 33 45689999999999852 1111 1345677788888776 789999887544
No 281
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=35.55 E-value=59 Score=36.87 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=55.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCCh-HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 237 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp-~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~ 237 (390)
..+++.++.+|......++...+.+. .+=....-.+.+|.++...++.+.+||..|+.+++.+.|.+..
T Consensus 378 e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 378 EALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 56889999999998888888888765 3322233346789999999888889999999999999887644
No 282
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=35.30 E-value=92 Score=35.65 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=73.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhhCCccchHHHHHc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVE 245 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~---~~vr~kAL~ALSsLiR~~~~a~~~f~~~ 245 (390)
+.|.-++..+|..+..+|....--.+..+..-+. -.+|.++.+=++.+ ..||.-|+.++.+|.|--|...-.-+.-
T Consensus 916 q~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~ 994 (1030)
T KOG1967|consen 916 QALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRP 994 (1030)
T ss_pred HhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccH
Confidence 5677899999999999999998888877776544 36888888866544 4689999999999999666654444445
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHH
Q 016423 246 AGDLMLQDILGNSSFEIRLHRKAVS 270 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d~klr~KA~~ 270 (390)
.-+..|..+|.++ ...+|..|+.
T Consensus 995 ~Vl~al~k~LdDk--KRlVR~eAv~ 1017 (1030)
T KOG1967|consen 995 LVLRALIKILDDK--KRLVRKEAVD 1017 (1030)
T ss_pred HHHHHhhhccCcH--HHHHHHHHHH
Confidence 6678888888876 3445555543
No 283
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.25 E-value=51 Score=34.95 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=34.2
Q ss_pred CCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhcC
Q 016423 286 VEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~~ 326 (390)
...+.+.++++++.|+.+|... +.+++..|...|..|+..+
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4456677899999999999754 7899999999999998754
No 284
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=32.52 E-value=3.3e+02 Score=30.37 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=44.8
Q ss_pred HHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 243 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 243 ~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
+..+-+++|..++..+ |.-+|. .||.++-. --+.+.+..++.-+.+++..-+...|..++|.++.++..|
T Consensus 327 yq~~i~p~l~kLF~~~--Dr~iR~---~LL~~i~~-----~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~L 396 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSP--DRQIRL---LLLQYIEK-----YIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVL 396 (690)
T ss_pred cccchhhhHHHHhcCc--chHHHH---HHHHhHHH-----HhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 3445567777777765 433332 34444432 1233444556677777777777777778888887777777
Q ss_pred Hhc
Q 016423 323 LQL 325 (390)
Q Consensus 323 ~~~ 325 (390)
+..
T Consensus 397 a~k 399 (690)
T KOG1243|consen 397 APK 399 (690)
T ss_pred Hhh
Confidence 753
No 285
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.02 E-value=6.5e+02 Score=26.78 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=39.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcCC------CHHHHHHHHHHH
Q 016423 171 LNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSS------FVEEAVKALYTV 228 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s~------~~~vr~kAL~AL 228 (390)
+.|+...=-.+|..+|-.|..| ..++-+.+-++..+..|+++++-. +..|+.|.+--|
T Consensus 54 iqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelL 118 (594)
T KOG1086|consen 54 IQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELL 118 (594)
T ss_pred cCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHH
Confidence 4566666667788888888888 456666777778889999988633 234555544433
No 286
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=32.01 E-value=1.2e+02 Score=25.13 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=38.9
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 237 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~ 237 (390)
|+.+...|+..+.|++.+.-.. + ..+..+.+-+...+.+-+...+|-+.+++++...
T Consensus 9 L~~s~~~I~~lt~~~~~~~~~a-~---------~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 9 LNNSQESIQTLTKWAIEHASHA-K---------EIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred ccccHHHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHhCCccceehhHHhHHHHHHHHhh
Confidence 3456778999999999877322 1 1344445555555555677899999999998643
No 287
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=31.97 E-value=6.1e+02 Score=29.85 Aligned_cols=140 Identities=15% Similarity=0.111 Sum_probs=85.9
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.|++.+..||+.||.-+|.+++--|. .+-..++...+.+++.-. ...=--|+-||+-+.+-.---...+. .-+
T Consensus 349 ~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~--dVv 422 (1133)
T KOG1943|consen 349 ALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE--DVV 422 (1133)
T ss_pred hccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH--HHH
Confidence 46788899999999999999999882 222335666777665432 33334677777777654332222321 335
Q ss_pred HHHHHHhcCC------ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhh-----cCCChhHHHHHHH
Q 016423 249 LMLQDILGNS------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT-----ASADLDLQEKALA 317 (390)
Q Consensus 249 ~~L~~lL~s~------~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL-----~~~d~~v~EkAL~ 317 (390)
+++...|.-+ +...-+|--||++++.+...+ .+...+ +++..|...| =..+..+|..|..
T Consensus 423 plI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray----s~~~l~-----p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 423 PLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAY----SPSDLK-----PVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcC----Chhhhh-----HHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 5566555321 123447889999999999631 222222 1333333322 2347889999998
Q ss_pred HHHHHHh
Q 016423 318 AIKNLLQ 324 (390)
Q Consensus 318 aL~~L~~ 324 (390)
|+...+.
T Consensus 494 AlqE~VG 500 (1133)
T KOG1943|consen 494 ALQENVG 500 (1133)
T ss_pred HHHHHhc
Confidence 8888775
No 288
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.96 E-value=3.8e+02 Score=30.35 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=91.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~L-L~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.++...+|-+|......++-+--.- -..+++..|+.. +++.++.||+.|+-||+=+|-..|..
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--------- 589 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--------- 589 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------
Confidence 5677888889988777766552110 012467778888 44556789999999999876554443
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
.+-.+.+|..+ .++-+|--|+++|.=-|. ..-.. ..+..|-.+...+..-||.-|+-++.-++.+.
T Consensus 590 ~~s~V~lLses-~N~HVRyGaA~ALGIaCA------GtG~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~- 655 (929)
T KOG2062|consen 590 LPSTVSLLSES-YNPHVRYGAAMALGIACA------GTGLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQ- 655 (929)
T ss_pred chHHHHHHhhh-cChhhhhhHHHHHhhhhc------CCCcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc-
Confidence 23345556544 356678888888887774 11111 12222333334345567788888887776532
Q ss_pred hHHHHHHhhCCcHHHHHHHHHHHHHhhh
Q 016423 328 TEALVLKDFCGLDTALERLRQQLQEVML 355 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~Lr~~l~el~~ 355 (390)
...+-+-+...|+++.....
T Consensus 656 --------t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 656 --------TEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred --------ccccCchHHHHHHHHHHHhh
Confidence 22344556677777777665
No 289
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=31.87 E-value=6.9e+02 Score=27.07 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=90.1
Q ss_pred cCCCCChHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHHHHhhcCCC------HHH-HHHHHHHHHHHhhCCccch
Q 016423 170 QLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSF------VEE-AVKALYTVSSLIRNNLAGQ 239 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QN---Np~~Q~~~le~g~l~~Ll~LL~s~~------~~v-r~kAL~ALSsLiR~~~~a~ 239 (390)
++...+++=|.+|.-.+...+.| |...+..+++.=|++-+-+||.+.+ +.| +.-++.-|.|.||.-.-+.
T Consensus 19 L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAs 98 (698)
T KOG2611|consen 19 LLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELAS 98 (698)
T ss_pred HhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhcc
Confidence 45667788889999999999998 5556777888877888888886542 233 5667888999999855443
Q ss_pred HHHHHcCcHHHHHHHhcCCC-hh----HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCC
Q 016423 240 EMFYVEAGDLMLQDILGNSS-FE----IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD 308 (390)
Q Consensus 240 ~~f~~~gGl~~L~~lL~s~~-~d----~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d 308 (390)
.. ...+-++.|..++.... +| .-+...+-.+|+..+ ..+.-...++..|.++.+.+.-..++
T Consensus 99 h~-~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va------~~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 99 HE-EMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA------TAEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred CH-HHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh------cCCchhHHHHhcCchHHHHHHHhCCC
Confidence 32 22477889999886321 11 223444545555555 35666778889999999987654443
No 290
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=31.86 E-value=20 Score=22.31 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc
Q 016423 178 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 214 (390)
Q Consensus 178 vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~ 214 (390)
||..|+++||.+- + | -++|.|++.|+
T Consensus 1 VR~~Aa~aLg~ig-d-~---------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIG-D-P---------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG--S-H---------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-C-H---------HHHHHHHHHhc
Confidence 6899999999983 3 1 25677776653
No 291
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=31.69 E-value=1.5e+02 Score=23.88 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHhhh--h--hhhhhhHHHHH-HHHHHHHHHHHHHh
Q 016423 339 LDTALERLRQQLQEVML--E--EDQRDYAMDVE-ALRREVELIFFRKL 381 (390)
Q Consensus 339 L~~~L~~Lr~~l~el~~--~--e~~~ey~~dl~-~lr~e~~~~~~~~~ 381 (390)
..+.|...|++++..+. . -.+++|..+|. ++++|.+.++|--+
T Consensus 19 vsEVL~~~k~N~D~~~aL~~ETKaEr~~R~~I~LA~k~Ek~r~~~tsi 66 (97)
T PF11043_consen 19 VSEVLDNIKNNYDAFMALPPETKAERMYRRDIQLAEKQEKERINQTSI 66 (97)
T ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56789999999998776 2 26899999964 67788888877543
No 292
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.33 E-value=1.3e+02 Score=34.02 Aligned_cols=98 Identities=10% Similarity=0.139 Sum_probs=58.9
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhc-----------CcHHHHHHhhcC---------------------CCHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLEL-----------GALSKLMKMVKS---------------------SFVEE 220 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-----------g~l~~Ll~LL~s---------------------~~~~v 220 (390)
...-+-+.....+|..++..||..++..+++ ...-.++.+|.. ++..+
T Consensus 403 eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~iv 482 (865)
T KOG1078|consen 403 EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIV 482 (865)
T ss_pred ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhh
Confidence 3444566666677777777777666554332 111123333321 12345
Q ss_pred HHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
|..|+.|++.+--+++ +....-...|.+++.+. |..+|-+|.|.+..+..
T Consensus 483 RaaAv~alaKfg~~~~-----~l~~sI~vllkRc~~D~--DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 483 RAAAVSALAKFGAQDV-----VLLPSILVLLKRCLNDS--DDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHHHHHHHHHhcCCC-----CccccHHHHHHHHhcCc--hHHHHHHHHHHHHHhhh
Confidence 6677777777753332 23334456788888876 66789999999999874
No 293
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.18 E-value=1e+03 Score=28.76 Aligned_cols=204 Identities=12% Similarity=0.128 Sum_probs=113.6
Q ss_pred HhHHHHHHHHHHcCCCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhccccccc---------ccCC---CCChH
Q 016423 112 KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNAN---------GQLN---HPDTD 177 (390)
Q Consensus 112 ~r~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~--~s~e~~~~aLd~Le~lve~IDnAn---------~lL~---s~~~~ 177 (390)
++..|++ ..--|..++.-++..+....+-+.- .........++-+.+++..+|+++ ++++ +..+.
T Consensus 122 etl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~ 200 (1266)
T KOG1525|consen 122 ETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKE 200 (1266)
T ss_pred HHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHH
Confidence 4555555 3333344565666666666554322 111222226677888888888887 3332 34444
Q ss_pred HHHHHHHHHHHHhhC-ChHHHHHHHh-------------------------------cCcHHHHHHhhcCCCHHHHHHHH
Q 016423 178 IRKISAWILGKASQN-NPLVQKQVLE-------------------------------LGALSKLMKMVKSSFVEEAVKAL 225 (390)
Q Consensus 178 vR~~Aa~vLgta~QN-Np~~Q~~~le-------------------------------~g~l~~Ll~LL~s~~~~vr~kAL 225 (390)
-+..|-.+|-.++.| ++..++.+.. .|++|.|-.=|.++...+|.+|+
T Consensus 201 a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~ 280 (1266)
T KOG1525|consen 201 ADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAV 280 (1266)
T ss_pred HHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 555566666666655 4443332211 37888888888888889999999
Q ss_pred HHHHHHhhCC--------ccchHHHHH----------cCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC
Q 016423 226 YTVSSLIRNN--------LAGQEMFYV----------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE 287 (390)
Q Consensus 226 ~ALSsLiR~~--------~~a~~~f~~----------~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~ 287 (390)
.-++-+.+.+ ++-..+|.. .--+....++|.++. + ..++...+..+... ..+++.
T Consensus 281 ~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~-~---~~~~~~~~~~l~~~---~~D~~~ 353 (1266)
T KOG1525|consen 281 KLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP-S---IAKASTILLALRER---DLDEDV 353 (1266)
T ss_pred HHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc-h---hhhHHHHHHHHHhh---cCChhh
Confidence 9999887753 333444431 112333344444321 1 33444444444421 112211
Q ss_pred ----------------chhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 288 ----------------PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 288 ----------------~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.-.++.. ++..+.+-+......||..|+..|..+..
T Consensus 354 rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 354 RVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 0111222 55555666666788999999999998887
No 294
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=31.09 E-value=1.8e+02 Score=31.00 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHH-HhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQV-LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 240 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~-le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~ 240 (390)
+.+..+|..|-.+||.+++..|.. | -+.+.+..|.+-|..+..+++...-.|||+++.+++....
T Consensus 385 ~~~~~lR~~aYe~lG~L~~~~p~l---~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~ 450 (501)
T PF13001_consen 385 SEDIELRSLAYETLGLLAKRAPSL---FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD 450 (501)
T ss_pred cccHHHHHHHHHHHHHHHccCccc---ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 467789999999999999998865 2 2246788888888777889999999999999988776554
No 295
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=30.33 E-value=2.6e+02 Score=23.19 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHH-HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCch
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 297 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~-~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v 297 (390)
++|..|+.-|=+=.-|+--....+. ...-+..|..-++.+ ++..+.+++.++..|+. ++.....+.+-|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~--~~~~~~~VL~Ll~~L~~------~~~a~~~l~~iG~~ 73 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP--PVPMKEEVLALLLRLLK------SPYAAQILRDIGAV 73 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHh------CcHHHHHHHHccHH
Confidence 3566666555442223222223332 222233444444554 33478899999999884 66677778888988
Q ss_pred HHHHHhhcCCChhHHHHHHHH
Q 016423 298 KSVVDLTASADLDLQEKALAA 318 (390)
Q Consensus 298 ~~Lv~lL~~~d~~v~EkAL~a 318 (390)
+.+.++=...++..+...-..
T Consensus 74 ~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 74 RFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 887766655565555554433
No 296
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=29.81 E-value=8.9e+02 Score=27.68 Aligned_cols=101 Identities=20% Similarity=0.162 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHHHhhCCh---HHHHHHHhcCcHHHHHHhhcCC--------CHHHH--------HHHHHHHHHHhhC
Q 016423 174 PDTDIRKISAWILGKASQNNP---LVQKQVLELGALSKLMKMVKSS--------FVEEA--------VKALYTVSSLIRN 234 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp---~~Q~~~le~g~l~~Ll~LL~s~--------~~~vr--------~kAL~ALSsLiR~ 234 (390)
++..+.....--|....-+|. ..++.+++.|++...+..|... +++.+ .-+|.-|..|+++
T Consensus 286 ~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~g 365 (802)
T PF13764_consen 286 PDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARG 365 (802)
T ss_pred chHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhc
Confidence 344444333333333334444 6888999999999888887432 22222 2578888999999
Q ss_pred CccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 235 NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 235 ~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
|++.|.. ...++++.+..+=+.. .+..+=..|-.+|-.|.
T Consensus 366 h~~tQ~~-~~~~~l~~lH~LEqvs-s~~~IGslAEnlLeal~ 405 (802)
T PF13764_consen 366 HEPTQLL-IAEQLLPLLHRLEQVS-SEEHIGSLAENLLEALA 405 (802)
T ss_pred CHHHHHH-HHhhHHHHHHHhhcCC-CccchHHHHHHHHHHHh
Confidence 9998887 4567775554443322 13334445666666665
No 297
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=29.72 E-value=4.5e+02 Score=32.76 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHHHHHhh--------CChHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 173 HPDTDIRKISAWILGKASQ--------NNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~Q--------NNp~~Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
+++..|+..|...|..++. .|-..|+.|++ ++..++. +.+.+++...+.++..++..+... +
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLk-----Pfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n---I- 1218 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMK-----PFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN---V- 1218 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh---h-
Confidence 5567788888887777665 23356666653 4444343 445689999999999998765432 2
Q ss_pred HcCcHHHHHHHhcC--CChhHHHHHHHHHHHHHHhh
Q 016423 244 VEAGDLMLQDILGN--SSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 244 ~~gGl~~L~~lL~s--~~~d~klr~KA~~LLs~L~~ 277 (390)
..||..+..+|.. ......+...|--.+..++.
T Consensus 1219 -kSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1219 -KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred -hcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3499999999872 11245566666666665554
No 298
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=28.12 E-value=2.9e+02 Score=28.91 Aligned_cols=109 Identities=14% Similarity=0.086 Sum_probs=75.9
Q ss_pred cHHHHHHhhcCCCHH-HHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 205 ALSKLMKMVKSSFVE-EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~-vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
.+..++.-..++... ..-..+..++-.+...+.+- .+++..|..-|... ++-+...|+.|+-.+.. +-
T Consensus 8 ~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~-----kd~lk~i~KRln~~--dphV~L~AlTLlda~~~----NC 76 (462)
T KOG2199|consen 8 PFEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGG-----KDCLKAIMKRLNHK--DPHVVLQALTLLDACVA----NC 76 (462)
T ss_pred hHHHHHHHhcCcccccccHHHHHHHHHhhcCCCccc-----HHHHHHHHHHhcCC--CcchHHHHHHHHHHHHH----hc
Confidence 344444444443321 23356777788887766432 34567777777765 56688899999999986 44
Q ss_pred CCCCchhhhhcCchHHHHHhhc-CCChhHHHHHHHHHHHHHh
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~-~~d~~v~EkAL~aL~~L~~ 324 (390)
...++..+.+..|...|-.++. +.+..|+++.-..+...+.
T Consensus 77 g~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 77 GKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred chHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 5667788889999999999998 5688888888766666654
No 299
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.85 E-value=2.6e+02 Score=28.22 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=59.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
+...+..|.+++=+...-.+.-|++|.+-|+.....-. +.-+-.+++-+++. -..+-+-||..+.++.+.. +.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNl--RS~VsraA~~t~~difs~l----n~ 162 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSL----NN 162 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHH----HH
Confidence 34445556665555667777888888877775544332 22233334445554 3346677888888888642 11
Q ss_pred CCchhhhhcCchHHHHHhh-cC---CChhHHHHHHHHHHHHHhcC
Q 016423 286 VEPPLFRDRFFLKSVVDLT-AS---ADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL-~~---~d~~v~EkAL~aL~~L~~~~ 326 (390)
. +.+ .+..++-.| .. ++--++|-|..+|.+++.+.
T Consensus 163 ~----i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 163 S----IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV 201 (334)
T ss_pred H----HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc
Confidence 1 111 233333333 22 24456777777777777653
No 300
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.47 E-value=3.7e+02 Score=22.56 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=42.9
Q ss_pred chHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHH----HhhhhhhhhhhHHHHHHHHH
Q 016423 296 FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ----EVMLEEDQRDYAMDVEALRR 371 (390)
Q Consensus 296 ~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~----el~~~e~~~ey~~dl~~lr~ 371 (390)
.++.|+..|..++.++..+|+..|....... .+-..+. .+.+.+..|...=. ...+....-.|..+...+.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v---~~~p~l~~L~~~g~~Ll~~~lS~~~Gf~~L~~~~~v~~ 84 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV---SLRPSLDHLGDIGSPLLLRFLSTPSGFRYLNEIGYVEK 84 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH---HcCcHHHHHHHcCHHHHHHHHcchHHHHHhcchhHHHH
Confidence 4567777887788888888888887776654 3333332 23344444433211 12222233446666555666
Q ss_pred HHHHHH
Q 016423 372 EVELIF 377 (390)
Q Consensus 372 e~~~~~ 377 (390)
|+..=+
T Consensus 85 El~~W~ 90 (115)
T PF14663_consen 85 ELDKWF 90 (115)
T ss_pred HHHHHH
Confidence 655443
No 301
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=26.51 E-value=90 Score=26.51 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhH
Q 016423 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 262 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~ 262 (390)
..+-.++.|. .+|.-+..|+..|+++.|+.+|..+++|+
T Consensus 65 ~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 65 EEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 4455556554 35888999999999999999999876665
No 302
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.14 E-value=5.6e+02 Score=27.59 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=68.1
Q ss_pred hcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhhCCccchHHHHHcC--cHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 016423 202 ELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--GDLMLQDILGNSSFEIRLHRKAVSLVGDL 275 (390)
Q Consensus 202 e~g~l~~Ll~LL~----s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g--Gl~~L~~lL~s~~~d~klr~KA~~LLs~L 275 (390)
+.|.+..++..+. +++...|.-|+..|.++..+ +-.+...++ -+..++..|.++. +..++-.|..+|.-+
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~---~P~kv~th~~~~ldaii~gL~D~~-~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG---APDKVRTHKTTQLDAIIRGLYDDL-NEEVQLEAMKCLTMV 327 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc---CcHHHHHhHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHH
Confidence 4566655544442 22334555666666665555 334444444 3455566666553 456777888877776
Q ss_pred hhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 276 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 276 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+.. ..+.+....++ .+.-.+..++.+.+.+++-.+..+.+.|+..
T Consensus 328 ~~~---~~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 328 LEK---ASNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHh---hhhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 631 12333333332 3455667778888899999999888888765
No 303
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=26.07 E-value=1.9e+02 Score=24.21 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHhhCC-h-HHHHHHHhcCcHHHHHHhhcCCCHH--HHHHHHHHHHHHhhCCccc----------hHH
Q 016423 176 TDIRKISAWILGKASQNN-P-LVQKQVLELGALSKLMKMVKSSFVE--EAVKALYTVSSLIRNNLAG----------QEM 241 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNN-p-~~Q~~~le~g~l~~Ll~LL~s~~~~--vr~kAL~ALSsLiR~~~~a----------~~~ 241 (390)
+-|+.+-|.+++.++... | .. .+.++.++.++.++... .-...+..++--+.++... .+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~W------p~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQW------PDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDA 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS------TTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhC------chHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHH
Confidence 347778888888885442 1 00 14677788888774322 1234555555555442110 111
Q ss_pred HHH--cCcHHHHHHHhcCCCh--hHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHH
Q 016423 242 FYV--EAGDLMLQDILGNSSF--EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 317 (390)
Q Consensus 242 f~~--~gGl~~L~~lL~s~~~--d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~ 317 (390)
+.. ..-++.+.+++..... ...+..+++.++.+.+. --....+...++++.+.++|.+++ +++.|+.
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-------~~~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~ 146 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS-------WIPIELIINSNLLNLIFQLLQSPE--LREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-------TS-HHHHHSSSHHHHHHHHTTSCC--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-------hCCHHHhccHHHHHHHHHHcCCHH--HHHHHHH
Confidence 111 1234555666654321 16788889888888873 223445667789999999996654 5888887
Q ss_pred HH
Q 016423 318 AI 319 (390)
Q Consensus 318 aL 319 (390)
||
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 304
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=25.87 E-value=2.6e+02 Score=31.97 Aligned_cols=93 Identities=20% Similarity=0.203 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc-ccccc----ccC------CCCCh-HHHHHHHHHHHHHhhCCh
Q 016423 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNAN----GQL------NHPDT-DIRKISAWILGKASQNNP 194 (390)
Q Consensus 127 ~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~-IDnAn----~lL------~s~~~-~vR~~Aa~vLgta~QNNp 194 (390)
|=++++..+.++.|+++... +....|+-|.+-|-+ .|.|- ..| ....+ --+..|..+||||...
T Consensus 21 pl~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~pgvd~aa~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg-- 96 (844)
T TIGR00117 21 PLNANQMAALVELLKNPPAG--EEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGG-- 96 (844)
T ss_pred CCCHHHHHHHHHHhcCCCCc--cHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCC--
Confidence 45567788888888877543 233445555555544 46654 111 11222 2467899999999443
Q ss_pred HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016423 195 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 232 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLi 232 (390)
++ +++|+.+|.+++.++...|.-+|+..+
T Consensus 97 --------~~-~~~l~~~~~~~~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 97 --------YN-VHPLIDALDSQDANIAPIAAKALSHTL 125 (844)
T ss_pred --------CC-HHHHHHHHhCCCHHHHHHHHHHHhceE
Confidence 22 889999999877888888888888754
No 305
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=25.42 E-value=2.1e+02 Score=35.29 Aligned_cols=83 Identities=10% Similarity=0.210 Sum_probs=60.8
Q ss_pred HHHHHHHHhhccccc-----cc-------cc-----CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc---CcHHHHHH
Q 016423 152 RALQELLILVEPIDN-----AN-------GQ-----LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL---GALSKLMK 211 (390)
Q Consensus 152 ~aLd~Le~lve~IDn-----An-------~l-----L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~---g~l~~Ll~ 211 (390)
..|+.|.+|++.+-. +. .. +.-++...-..-..+|+.++++++..+..+.+. ..++.|+.
T Consensus 537 ~if~~L~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~el~~ee~~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~ 616 (1691)
T PF11894_consen 537 QIFQSLQYYIDKLRQQQQQQQSQSIQRSRSPPPEIELSPEEVEMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFG 616 (1691)
T ss_pred HHHHHHHHHHHHhccccCCCCccccccCCCCCcccCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHH
Confidence 346677777777661 11 11 233344456778889999999999999999886 46999999
Q ss_pred hhcCCC-HHHHHHHHHHHHHHhhC
Q 016423 212 MVKSSF-VEEAVKALYTVSSLIRN 234 (390)
Q Consensus 212 LL~s~~-~~vr~kAL~ALSsLiR~ 234 (390)
++...- ..++...+.+|++++..
T Consensus 617 L~~~~vp~~Lkaai~~~Laal~~~ 640 (1691)
T PF11894_consen 617 LLSCPVPPSLKAAIFNALAALAAK 640 (1691)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhc
Confidence 998754 46888999999999733
No 306
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=24.79 E-value=1.3e+02 Score=33.28 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=56.6
Q ss_pred HhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 201 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 201 le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+..+.+|.|++|+...+..+|...|.-+=..+++-++ ..++.--++.+...+.+. +.-+|..++..+..|+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~---~~~~d~I~phv~~G~~DT--n~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK---QILNDQIFPHVALGFLDT--NATLREQTLKSMAVLAP 398 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH---HhhcchhHHHHHhhcccC--CHHHHHHHHHHHHHHHh
Confidence 3346899999999998888999998888888887654 334556678888888775 56689899888888875
No 307
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=24.73 E-value=1.9e+02 Score=32.04 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 253 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~ 253 (390)
.+.-|..|..+||.+++..|..--.+.+...++.|++.|..+. ..+...|+.+|.-|+=+-|.....+. ..-+.+..+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L-~~Lf~If~R 159 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHL-PDLFNIFGR 159 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHH-HHHHHHHHH
Confidence 3568899999999999999999999999999999999998775 45678999999999988776544433 233344444
Q ss_pred Hh
Q 016423 254 IL 255 (390)
Q Consensus 254 lL 255 (390)
++
T Consensus 160 l~ 161 (668)
T PF04388_consen 160 LL 161 (668)
T ss_pred HH
Confidence 44
No 308
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=24.53 E-value=2.7e+02 Score=28.72 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=46.4
Q ss_pred chhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH---------------hhCCcHHHHHHHHHHHHH
Q 016423 288 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK---------------DFCGLDTALERLRQQLQE 352 (390)
Q Consensus 288 ~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~---------------~~~gL~~~L~~Lr~~l~e 352 (390)
....+...++..|+.++.++|..=|+.....|..+..--..+|..++ ..+|+.++|+.|.+-+..
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 55567889999999999999999999888888887753334454442 346677778877777765
Q ss_pred hh
Q 016423 353 VM 354 (390)
Q Consensus 353 l~ 354 (390)
..
T Consensus 206 f~ 207 (409)
T PF01603_consen 206 FA 207 (409)
T ss_dssp --
T ss_pred cC
Confidence 43
No 309
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.50 E-value=3e+02 Score=22.18 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHhhC----ChHHHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHH
Q 016423 175 DTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSL 231 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QN----Np~~Q~~~le~g~l~~Ll~LL~s~~--~~vr~kAL~ALSsL 231 (390)
+-.+|..||.+|+.++.+ +|..|-. ++..|.+.+.+++ ....--|+..|+.+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~R-----i~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPR-----ITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 447999999999999877 3334443 4566777776554 34566788888777
No 310
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.38 E-value=86 Score=22.47 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 016423 4 RRNRIASRALWLLVLLMITMAIG 26 (390)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (390)
|||+.+-.++++++++.+++..+
T Consensus 13 ~~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 13 RRNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred HhCchHHHHHHHHHHHHHHHHHH
Confidence 68888888888888887777665
No 311
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.29 E-value=2.1e+02 Score=24.18 Aligned_cols=64 Identities=22% Similarity=0.083 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh-cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh
Q 016423 219 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 292 (390)
Q Consensus 219 ~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL-~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~ 292 (390)
+...+.+..|+.++.+. .....+ +.+|..-| ..+....+..-||+.+|.+|+. ++++.+...+.
T Consensus 18 gp~~~~l~eIa~~t~~~-~~~~~I-----~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~----nG~~~~~~~~~ 82 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNS-KDCQEI-----MDVLWKRLSKSDGKNWRHVYKALTLLEYLLK----NGSERFVDELR 82 (125)
T ss_dssp S--HHHHHHHHHHTTSC-HHHHHH-----HHHHHHHHHSSTSSGHHHHHHHHHHHHHHHH----HS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcc-ccHHHH-----HHHHHHHHHhcCCcchhHHHHHHHHHHHHHH----HCCHHHHHHHH
Confidence 34667888899998776 322222 46777777 4444578899999999999997 45655555553
No 312
>PRK14015 pepN aminopeptidase N; Provisional
Probab=24.21 E-value=1.1e+03 Score=27.04 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=76.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc-------CcHHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCccc
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-------GALSKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAG 238 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-------g~l~~Ll~LL~s~~----~~vr~kAL~ALSsLiR~~~~a 238 (390)
+|.+.+..-|..+....-.-.+++|-+=+..+.. +.+..+-+|..++. ++-|..|| |++.+.+|+.+
T Consensus 723 ~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral--~~~f~~~n~~~ 800 (875)
T PRK14015 723 ALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSL--IGAFAAANPAG 800 (875)
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHH--HHHHhhcCCcc
Confidence 3433334567777777777778888776654442 56777777777653 34466666 67777777775
Q ss_pred hHHHHHcCcHHHHHHHhcC-CChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHH
Q 016423 239 QEMFYVEAGDLMLQDILGN-SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKA 315 (390)
Q Consensus 239 ~~~f~~~gGl~~L~~lL~s-~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkA 315 (390)
...- .-.|+..|.+.+.. +..++.+ |+.++..+..=+ .-++ -.+.-+...|-.++..+ ..|+.|.+
T Consensus 801 fh~~-~g~gy~~~~~~i~~ld~~Np~~---aarl~~~~~~~~--~~~~-----~r~~~~~~~l~~i~~~~~ls~d~~e~~ 869 (875)
T PRK14015 801 FHAA-DGSGYRFLADQILALDKINPQV---AARLATPLIRWR--RYDP-----KRQALMRAALERIAALPNLSKDVREIV 869 (875)
T ss_pred cCCC-CCcHHHHHHHHHHHhcCcCHHH---HHHHHHHhhhhh--ccCH-----HHHHHHHHHHHHHHhCcCCCccHHHHH
Confidence 4331 23378888887642 2235544 556666665311 0011 12222334444555443 45666666
Q ss_pred HHHH
Q 016423 316 LAAI 319 (390)
Q Consensus 316 L~aL 319 (390)
-.+|
T Consensus 870 ~~~l 873 (875)
T PRK14015 870 SKAL 873 (875)
T ss_pred HHHh
Confidence 5544
No 313
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=23.84 E-value=5.6e+02 Score=25.45 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=36.6
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
.++.|...|.+....+-+|--|+.+|..+.. ...++.|.+.+..++.-+++.+.-+|..+-
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4555666665443455566677777776652 345556666666666667776666655443
No 314
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=23.70 E-value=1.4e+02 Score=33.39 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcCcHHH-HHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh
Q 016423 178 IRKISAWILGKASQNNPLVQKQVLELGALSK-LMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 255 (390)
Q Consensus 178 vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~-Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL 255 (390)
-|..+...+-.+.+.-+..+..+.-+..+.+ +..++..+. +.....|+|++.+++..++.........||++.+..+-
T Consensus 597 ~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 597 FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 3444444444444444444444444555555 666665443 46788999999999999999877788899999988875
Q ss_pred cCCChhHHHHHHHHHHH
Q 016423 256 GNSSFEIRLHRKAVSLV 272 (390)
Q Consensus 256 ~s~~~d~klr~KA~~LL 272 (390)
.... ...++..+..++
T Consensus 677 ~~~~-~~~~~~~~~~~i 692 (699)
T KOG3665|consen 677 VLSE-VVDVKEEAVLVI 692 (699)
T ss_pred hhHH-HHHHHHHHHHHh
Confidence 4432 444454444443
No 315
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=23.19 E-value=5.9e+02 Score=28.87 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=71.8
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+-+...+.+|..++.=+|..++- ++......+.+|.++.|..++.+.||..|.-++-++...+...- =..+-+.+
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~ 319 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTE 319 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhH
Confidence 33557788888888888877654 44467777899999999999888999988888888876654432 12345677
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.++.+..+. +.+++..+.-..+.|..
T Consensus 320 ~l~~~~~d~--~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 320 SLVQAVEDG--SWRVSYMVADKFSELSS 345 (759)
T ss_pred HHHHHhcCh--hHHHHHHHhhhhhhHHH
Confidence 777777765 55566666555555553
No 316
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=22.99 E-value=4.8e+02 Score=24.67 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=89.0
Q ss_pred CCCCHHHHHHhHHHHHHHHHHcCCCCh----HH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc---------
Q 016423 103 QRLSPSELKKRQMEIKELMEKLKTPSD----AQ-LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN--------- 168 (390)
Q Consensus 103 ~~~s~e~l~~r~~~L~eal~~~~~~~d----~~-~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn--------- 168 (390)
.+++++++ ..|+..+..+.-+.. .. ...-...++.. -+.+.+.-+||-++-++-...-+.
T Consensus 34 ~~l~~~el----~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~ 107 (268)
T PF08324_consen 34 LKLSEEEL----ESLESLLSALKSTSAYHSDLSAWLILLLKILLS--WPPESRFPALDLLRLAALHPPASDLLASEDSGI 107 (268)
T ss_dssp T-S-HHHH----HHHHHHHCCCCCC-SS---HHHHHHHHHHHHCC--S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-
T ss_pred cCCCHHHH----HHHHHHHHHhcCCCccccchhHHHHHHHHHHHh--CCCccchhHHhHHHHHHhCccHHHHHhccccch
Confidence 57888754 457777765432211 22 23333333332 345667788888777765543321
Q ss_pred ---------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc-C-cHHHHHHhhcCC----CHHHHHH---HHHHHHH
Q 016423 169 ---------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-G-ALSKLMKMVKSS----FVEEAVK---ALYTVSS 230 (390)
Q Consensus 169 ---------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g-~l~~Ll~LL~s~----~~~vr~k---AL~ALSs 230 (390)
....+.++..+..++.+++++..+.+ .+..++.+ + .+-..+..+.+. +..++.. .++-+|.
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv 186 (268)
T PF08324_consen 108 ADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSV 186 (268)
T ss_dssp HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 22334678899999999999988755 55555554 3 344444444443 3455553 3444455
Q ss_pred HhhCCcc-chHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 231 LIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 231 LiR~~~~-a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+..+++. ..... .-+..+...+.....+....-|.+.++.+|+.
T Consensus 187 ~~~~~~~~~~~~~---~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 187 LLHKNRSDEEWQS---ELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHHCTS-CCHHH---HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCChHHHH---HHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 5544442 11111 11344455333222356678899999999984
No 317
>PLN03205 ATR interacting protein; Provisional
Probab=22.94 E-value=1.5e+02 Score=31.23 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=82.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHc--CcHHHHHHHhc---CCChhHHHHHHHHHHHHHHhhhhh
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE--AGDLMLQDILG---NSSFEIRLHRKAVSLVGDLAKCQL 280 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~--gGl~~L~~lL~---s~~~d~klr~KA~~LLs~L~~~~l 280 (390)
+++|+.|-.-++..+...++..|=.++.|--.....|... -.|-.|.+++. ..++...+|..|+..+.-++..
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlms-- 402 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMS-- 402 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhc--
Confidence 5678888777776666677777777766644444444321 12333333332 1224667888999888877752
Q ss_pred hcCCC-CCchhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHhcChhHHHHHHhhC
Q 016423 281 ENMHK-VEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTTEALVLKDFC 337 (390)
Q Consensus 281 ~~~~~-~~~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~ 337 (390)
.++ ..++.|-..-+.+.+..+|+.. ..-+|..|+..|.-|+. |+..+.-+|
T Consensus 403 --sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN----CpklL~iFc 455 (652)
T PLN03205 403 --TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN----CPKLYDRFD 455 (652)
T ss_pred --cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc----CcHHHHHHh
Confidence 232 3467777788899999999876 67899999999998885 666666565
No 318
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=22.38 E-value=2.4e+02 Score=25.69 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=7.6
Q ss_pred CcHHHHHHhhcC
Q 016423 204 GALSKLMKMVKS 215 (390)
Q Consensus 204 g~l~~Ll~LL~s 215 (390)
..+|.+++||.-
T Consensus 70 ~~F~~l~~LL~~ 81 (193)
T PF12612_consen 70 EYFPRLVKLLDL 81 (193)
T ss_pred HHHHHHHHHhcc
Confidence 356777777654
No 319
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=22.19 E-value=1.8e+02 Score=33.24 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred CHHHHHHhHHHHHHHHHHc-------------------------CCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 016423 106 SPSELKKRQMEIKELMEKL-------------------------KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLIL 160 (390)
Q Consensus 106 s~e~l~~r~~~L~eal~~~-------------------------~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~l 160 (390)
|+++|++-|++|++||+.| -.++|-+.|-+-|+-+...+ ..++-..+|++|+.+
T Consensus 521 sdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~ieela~~G-~~~~A~qlL~qlq~m 599 (851)
T TIGR02302 521 SDEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSG-DRDQAKQLLSQLQQM 599 (851)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q ss_pred hccccccc
Q 016423 161 VEPIDNAN 168 (390)
Q Consensus 161 ve~IDnAn 168 (390)
.|++-++.
T Consensus 600 menlq~~q 607 (851)
T TIGR02302 600 MNNLQMGQ 607 (851)
T ss_pred HHHHhccC
No 320
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.91 E-value=2e+02 Score=31.29 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=46.6
Q ss_pred cccCCCCHHHHHH--hHHHHHHHHHHcCCC-----------------ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 016423 100 QDVQRLSPSELKK--RQMEIKELMEKLKTP-----------------SDAQLIQIAIDDLNNSTLSLEDSQRALQELLIL 160 (390)
Q Consensus 100 ~~~~~~s~e~l~~--r~~~L~eal~~~~~~-----------------~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~l 160 (390)
.....+||.+.+| .++||...++++... -+...|.-++..|.|.+.+++.....=|++.++
T Consensus 108 ~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yy 187 (575)
T KOG2150|consen 108 SAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYY 187 (575)
T ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHH
Confidence 3445788876543 378999998887421 112345568888999999998888888999999
Q ss_pred hcc
Q 016423 161 VEP 163 (390)
Q Consensus 161 ve~ 163 (390)
||+
T Consensus 188 Ve~ 190 (575)
T KOG2150|consen 188 VES 190 (575)
T ss_pred HHh
Confidence 986
No 321
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=21.50 E-value=7.5e+02 Score=23.95 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=39.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC--CChhHHHHHHHHHHHHHhc
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~~v~EkAL~aL~~L~~~ 325 (390)
|-..|.++ +..+|.||+.+|+.++.. -.++. ....-+..++..+.+ .|......++.++.+|+..
T Consensus 4 Lg~~Ltse--d~~~R~ka~~~Ls~vL~~----lp~~~----L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~ 70 (262)
T PF14500_consen 4 LGEYLTSE--DPIIRAKALELLSEVLER----LPPDF----LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKM 70 (262)
T ss_pred hhhhhCCC--CHHHHHHHHHHHHHHHHh----CCHhh----ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhC
Confidence 45566665 677899999999999863 12221 222224445554433 3666666667777777754
No 322
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.29 E-value=1.3e+03 Score=26.59 Aligned_cols=39 Identities=23% Similarity=0.111 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhccccccc-------ccCCCCChHHHHHHHHHHHHH
Q 016423 151 QRALQELLILVEPIDNAN-------GQLNHPDTDIRKISAWILGKA 189 (390)
Q Consensus 151 ~~aLd~Le~lve~IDnAn-------~lL~s~~~~vR~~Aa~vLgta 189 (390)
+.-+-=++|-=++-|.|- +-|+.+|+-||..|..+++.+
T Consensus 90 LVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsI 135 (968)
T KOG1060|consen 90 LVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSI 135 (968)
T ss_pred HHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhc
Confidence 333444444445667775 678899999999999998876
No 323
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=21.16 E-value=1.2e+02 Score=27.18 Aligned_cols=80 Identities=11% Similarity=0.179 Sum_probs=50.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccch------HHHHH
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ------EMFYV 244 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~------~~f~~ 244 (390)
++..+..+|.+|..++-.+.++ |-... |+..++-|+.+.-.+-.|-+|-==++..+++.+. +...+
T Consensus 64 ~~t~~q~vK~~a~~~v~~vL~~-------ik~ad-I~~~v~~Ls~e~~DiLmKYiYkGm~~p~d~~s~~~LL~WHEk~~~ 135 (152)
T KOG3380|consen 64 YGTKDQEVKDRALNVVLKVLTS-------IKQAD-IEAAVKKLSTEEIDILMKYIYKGMEIPSDNSSCVSLLQWHEKLVA 135 (152)
T ss_pred CCCccHHHHHHHHHHHHHHHHH-------HHHHh-HHHHHHHhhHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 3556778999888887777554 22222 6666666665554556666664444444444443 35567
Q ss_pred cCcHHHHHHHhcCC
Q 016423 245 EAGDLMLQDILGNS 258 (390)
Q Consensus 245 ~gGl~~L~~lL~s~ 258 (390)
.+|+.+|+++|++.
T Consensus 136 ~~GvG~IvRvLs~r 149 (152)
T KOG3380|consen 136 KSGVGCIVRVLSDR 149 (152)
T ss_pred hcCCceEEEeecCC
Confidence 89999999988764
No 324
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=20.64 E-value=2.1e+02 Score=23.88 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhhccccccc-----------ccCCCCChHH
Q 016423 112 KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILVEPIDNAN-----------GQLNHPDTDI 178 (390)
Q Consensus 112 ~r~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s--~e~~~~aLd~Le~lve~IDnAn-----------~lL~s~~~~v 178 (390)
+|+..++++|... -..++.-...++...... .+-...+|+-+..++.-++-.. ++| .++.+
T Consensus 67 ~r~~~l~~~l~~~----~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l--~~~~~ 140 (148)
T PF08389_consen 67 ERRRELKDALRSN----SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL--QSPEL 140 (148)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT--TSCCC
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc--CCHHH
Confidence 4889999988753 234455555555544332 6667788899988888665432 445 34445
Q ss_pred HHHHHHHH
Q 016423 179 RKISAWIL 186 (390)
Q Consensus 179 R~~Aa~vL 186 (390)
+..|+.||
T Consensus 141 ~~~A~~cl 148 (148)
T PF08389_consen 141 REAAAECL 148 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 77777765
No 325
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=20.49 E-value=1.3e+03 Score=26.42 Aligned_cols=92 Identities=15% Similarity=0.048 Sum_probs=61.3
Q ss_pred CCHHHHHHhHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc---cc----ccCC-C-CC
Q 016423 105 LSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN---AN----GQLN-H-PD 175 (390)
Q Consensus 105 ~s~e~l~~r~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDn---An----~lL~-s-~~ 175 (390)
-++|+. .|-..+|++|..--+|.-+..-.+++....+. ..++-.-..||-+..+|.=||- || ++|. . .-
T Consensus 167 rT~eei-~knnliKDaMR~ndip~lv~~wyqil~~y~n~-~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~i 244 (980)
T KOG2021|consen 167 RTKEEI-LKNNLIKDAMRDNDIPKLVNVWYQILKLYENI-VNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLNI 244 (980)
T ss_pred CChHHH-HHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHhH
Confidence 355554 36778899998654665555666666666654 2455556678888888888875 45 3321 1 35
Q ss_pred hHHHHHHHHHHHHHhhCChHHHH
Q 016423 176 TDIRKISAWILGKASQNNPLVQK 198 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~ 198 (390)
.++|..||.|+-.++.--=+=++
T Consensus 245 eelR~aac~cilaiVsKkMkP~d 267 (980)
T KOG2021|consen 245 EELRIAACNCILAIVSKKMKPMD 267 (980)
T ss_pred HHHHHHHHHHHHHHHhcCCChhH
Confidence 78999999999999877433333
No 326
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=20.38 E-value=5.4e+02 Score=22.48 Aligned_cols=59 Identities=25% Similarity=0.304 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHHHHHhhh-----hhhhhhhHHHHHHHHHHHHH
Q 016423 308 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML-----EEDQRDYAMDVEALRREVEL 375 (390)
Q Consensus 308 d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~l~el~~-----~e~~~ey~~dl~~lr~e~~~ 375 (390)
++.+.|+.+.++.+|-. ..+ ...+.++..|++.+.-+.+ .|-+.+-...++-||++++.
T Consensus 61 ~~~fvEKTi~til~Lhe------Kvl---~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 61 DPMFVEKTIGTILNLHE------KVL---DAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred ccchhhhHHHHHHHHHH------HHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44688999888887764 233 3556777777777665544 23344445667778888764
No 327
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=20.19 E-value=8.4e+02 Score=24.04 Aligned_cols=175 Identities=15% Similarity=0.105 Sum_probs=87.7
Q ss_pred CCCCHHHHHHHHHHHHHhhccc----cccc-----ccCCCCChHHHHHHHHHHHHHhhCChHH-HHHHHhcCcHHHHHHh
Q 016423 143 STLSLEDSQRALQELLILVEPI----DNAN-----GQLNHPDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKM 212 (390)
Q Consensus 143 ~~~s~e~~~~aLd~Le~lve~I----DnAn-----~lL~s~~~~vR~~Aa~vLgta~QNNp~~-Q~~~le~g~l~~Ll~L 212 (390)
.+..+.-+..+++.|-..+..+ +..- +-+....+.+|..-..++|.+...++.. ...+. ...+|.|++.
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~ 111 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFA-EPFLPKLLQS 111 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHH-HHHHHHHHHH
Confidence 3455555666666665555444 2211 5667777779999999999998711111 11122 2478899998
Q ss_pred hcCC----CHHHHH---HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh-cCCC----hhHHHHHH------HHHHHHH
Q 016423 213 VKSS----FVEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-GNSS----FEIRLHRK------AVSLVGD 274 (390)
Q Consensus 213 L~s~----~~~vr~---kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL-~s~~----~d~klr~K------A~~LLs~ 274 (390)
++.- ...... -+.|++-.+.+........ -......+ -+++ .+.|+-.| .+|++..
T Consensus 112 ~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~------~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~a 185 (339)
T PF12074_consen 112 LKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDS------KNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRA 185 (339)
T ss_pred HHHHHhCCCCccccccHHHHHHHHHhccccchhhhh------hhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHH
Confidence 8532 111121 2233333321211111111 00011111 1111 12344444 3333333
Q ss_pred HhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhcC
Q 016423 275 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 275 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~~ 326 (390)
|..- +.+......... ..-|-+.++.++.++ ...+|..|+.+|..+....
T Consensus 186 l~~~-~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 186 LEAL-LSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred HHHH-HhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 3220 001111111222 456788899999888 8999999999999888754
Done!