Query 016423
Match_columns 390
No_of_seqs 252 out of 781
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 100.0 2.4E-36 8.3E-41 294.4 20.3 241 114-366 13-281 (296)
2 4db6_A Armadillo repeat protei 99.8 1.1E-18 3.6E-23 157.2 17.0 171 169-346 19-189 (210)
3 4hxt_A De novo protein OR329; 99.8 4.4E-18 1.5E-22 155.7 19.7 171 169-346 51-221 (252)
4 4db6_A Armadillo repeat protei 99.8 1.1E-17 3.6E-22 150.6 18.0 149 169-324 61-209 (210)
5 4db8_A Armadillo-repeat protei 99.8 6.3E-18 2.2E-22 156.0 16.6 171 169-346 61-231 (252)
6 3tt9_A Plakophilin-2; cell adh 99.7 1E-16 3.4E-21 151.1 18.8 175 169-351 15-208 (233)
7 4hxt_A De novo protein OR329; 99.7 1.2E-16 4.1E-21 146.1 16.7 171 170-347 10-180 (252)
8 4db8_A Armadillo-repeat protei 99.7 2.1E-16 7.3E-21 145.7 16.2 183 133-324 56-251 (252)
9 3ul1_B Importin subunit alpha- 99.7 7.2E-15 2.5E-19 151.6 24.3 207 134-347 60-284 (510)
10 1xm9_A Plakophilin 1; armadill 99.7 7.6E-16 2.6E-20 157.1 16.7 171 170-350 10-198 (457)
11 3nmw_A APC variant protein; AR 99.7 1.9E-15 6.6E-20 150.3 19.1 178 169-348 134-316 (354)
12 3tpo_A Importin subunit alpha- 99.7 1.6E-15 5.3E-20 156.9 18.7 173 169-348 169-346 (529)
13 3tpo_A Importin subunit alpha- 99.6 1.7E-14 5.9E-19 149.1 23.7 174 169-347 126-303 (529)
14 4b8j_A Importin subunit alpha- 99.6 1.9E-14 6.5E-19 147.4 23.3 207 133-348 76-297 (528)
15 3ul1_B Importin subunit alpha- 99.6 6E-15 2E-19 152.2 19.2 171 169-346 150-325 (510)
16 1xqr_A HSPBP1 protein; armadil 99.6 2.4E-15 8.3E-20 146.2 15.0 166 176-348 54-220 (296)
17 1wa5_B Importin alpha subunit; 99.6 4E-14 1.4E-18 145.4 24.0 195 146-347 100-309 (530)
18 4b8j_A Importin subunit alpha- 99.6 2.8E-14 9.7E-19 146.1 21.9 208 133-349 119-340 (528)
19 3l6x_A Catenin delta-1; cateni 99.6 1.2E-14 4E-19 153.4 19.1 174 169-350 55-248 (584)
20 2jdq_A Importin alpha-1 subuni 99.6 2.9E-14 9.8E-19 141.4 19.8 174 147-326 206-392 (450)
21 3nmz_A APC variant protein; pr 99.6 9.6E-15 3.3E-19 150.1 16.8 178 169-348 250-432 (458)
22 1wa5_B Importin alpha subunit; 99.6 2.7E-14 9.2E-19 146.7 18.8 195 146-347 144-351 (530)
23 2jdq_A Importin alpha-1 subuni 99.6 9.2E-14 3.2E-18 137.7 20.7 171 169-347 114-286 (450)
24 1xm9_A Plakophilin 1; armadill 99.6 2.7E-14 9.2E-19 145.6 17.2 178 136-323 7-219 (457)
25 3nmw_A APC variant protein; AR 99.5 5.4E-14 1.9E-18 139.8 14.3 168 174-348 96-274 (354)
26 3now_A UNC-45 protein, SD10334 99.5 4.2E-13 1.4E-17 146.1 18.3 210 132-348 378-634 (810)
27 3now_A UNC-45 protein, SD10334 99.5 2.8E-13 9.6E-18 147.5 15.6 171 169-347 587-760 (810)
28 1jdh_A Beta-catenin; beta-cate 99.5 2.6E-12 8.9E-17 130.1 21.3 209 132-348 60-319 (529)
29 3nmz_A APC variant protein; pr 99.5 7.1E-13 2.4E-17 136.2 16.7 151 170-327 295-453 (458)
30 2z6h_A Catenin beta-1, beta-ca 99.4 7.6E-12 2.6E-16 132.0 22.7 209 132-348 57-316 (644)
31 3tt9_A Plakophilin-2; cell adh 99.4 1.3E-12 4.3E-17 123.1 13.4 149 169-324 59-229 (233)
32 1jdh_A Beta-catenin; beta-cate 99.4 4E-13 1.4E-17 136.1 10.7 171 169-348 24-196 (529)
33 2z6g_A B-catenin; FULL-length, 99.4 3E-11 1E-15 131.0 22.2 208 133-348 194-452 (780)
34 2z6g_A B-catenin; FULL-length, 99.3 8.2E-12 2.8E-16 135.5 15.1 196 146-349 373-605 (780)
35 2z6h_A Catenin beta-1, beta-ca 99.3 8.2E-12 2.8E-16 131.8 13.9 170 169-347 21-192 (644)
36 3l6x_A Catenin delta-1; cateni 99.3 3E-11 1E-15 127.4 16.2 150 169-325 97-271 (584)
37 3grl_A General vesicular trans 99.2 4.6E-10 1.6E-14 118.7 17.6 174 169-347 129-321 (651)
38 3opb_A SWI5-dependent HO expre 99.0 2.3E-09 7.8E-14 115.8 13.0 152 169-326 464-637 (778)
39 3grl_A General vesicular trans 98.8 1.3E-07 4.3E-12 100.2 16.6 141 199-346 116-263 (651)
40 4gmo_A Putative uncharacterize 98.7 2.7E-08 9.3E-13 106.4 10.4 160 170-335 42-225 (684)
41 3opb_A SWI5-dependent HO expre 98.7 6.2E-08 2.1E-12 104.7 13.1 139 179-325 576-729 (778)
42 3ltj_A Alpharep-4; protein eng 98.5 4.7E-06 1.6E-10 73.9 17.7 115 169-323 52-166 (201)
43 3ltm_A Alpha-REP4; protein eng 98.5 3.1E-06 1.1E-10 75.7 16.5 150 130-323 18-171 (211)
44 3ltj_A Alpharep-4; protein eng 98.3 6.6E-06 2.2E-10 73.0 13.0 116 169-324 21-136 (201)
45 3ltm_A Alpha-REP4; protein eng 98.3 8.2E-06 2.8E-10 72.9 13.3 116 169-324 26-141 (211)
46 2qk2_A LP04448P; mini spindles 98.3 1.6E-05 5.6E-10 73.0 15.4 166 144-325 26-206 (242)
47 1oyz_A Hypothetical protein YI 98.2 1.7E-05 5.9E-10 73.9 14.8 160 130-323 53-220 (280)
48 1oyz_A Hypothetical protein YI 98.2 3E-05 1E-09 72.2 16.5 126 169-323 61-187 (280)
49 3qml_C Protein SLS1, nucleotid 98.2 5.4E-06 1.9E-10 80.3 10.2 126 147-277 42-189 (315)
50 4fdd_A Transportin-1; heat rep 98.2 8.1E-06 2.8E-10 88.3 12.1 147 169-324 366-512 (852)
51 2qk1_A Protein STU2; STU2P, XM 98.1 2.5E-05 8.7E-10 73.3 13.6 172 144-324 27-220 (249)
52 4gmo_A Putative uncharacterize 98.1 1.2E-05 4E-10 86.1 11.1 180 136-323 39-257 (684)
53 1te4_A Conserved protein MTH18 98.0 6.3E-07 2.1E-11 75.3 -0.6 112 169-321 19-130 (131)
54 2vgl_B AP-2 complex subunit be 98.0 0.00011 3.9E-09 76.7 16.2 152 112-277 29-189 (591)
55 1b3u_A Protein (protein phosph 98.0 9.2E-05 3.2E-09 75.1 14.8 138 169-322 448-585 (588)
56 3b2a_A TON_1937, putative unch 97.9 0.0007 2.4E-08 63.6 17.6 166 133-325 21-219 (265)
57 1b3u_A Protein (protein phosph 97.8 0.00014 4.8E-09 73.7 13.5 125 145-277 176-310 (588)
58 2vgl_B AP-2 complex subunit be 97.8 0.00039 1.3E-08 72.6 17.2 136 169-326 56-191 (591)
59 2bpt_A Importin beta-1 subunit 97.8 0.00037 1.3E-08 74.2 16.2 172 148-327 346-532 (861)
60 4fdd_A Transportin-1; heat rep 97.8 0.00046 1.6E-08 74.5 16.8 145 173-326 597-744 (852)
61 1ibr_B P95, importin beta-1 su 97.7 9.1E-05 3.1E-09 72.8 9.2 187 129-325 33-247 (462)
62 1qgr_A Protein (importin beta 97.7 0.00039 1.3E-08 74.1 14.2 151 169-326 373-539 (876)
63 1u6g_C TIP120 protein, CAND1; 97.6 0.001 3.5E-08 74.7 16.9 147 169-326 55-206 (1230)
64 1w63_A Adapter-related protein 97.6 0.00078 2.7E-08 70.9 14.3 163 139-327 42-211 (618)
65 1w63_A Adapter-related protein 97.6 0.00044 1.5E-08 72.8 12.4 136 169-325 114-264 (618)
66 4ffb_C Protein STU2; tubulin f 97.5 0.004 1.4E-07 58.4 16.3 169 146-325 22-213 (278)
67 1ibr_B P95, importin beta-1 su 97.3 0.00069 2.4E-08 66.4 10.0 147 170-325 136-289 (462)
68 1u6g_C TIP120 protein, CAND1; 97.3 0.004 1.4E-07 69.9 17.3 189 131-325 48-285 (1230)
69 2qk2_A LP04448P; mini spindles 97.3 0.00056 1.9E-08 62.7 8.1 141 169-325 22-163 (242)
70 1te4_A Conserved protein MTH18 97.3 0.00011 3.9E-09 61.2 3.0 81 170-274 50-130 (131)
71 1qgr_A Protein (importin beta 97.3 0.00093 3.2E-08 71.3 10.6 138 174-325 340-480 (876)
72 2bpt_A Importin beta-1 subunit 97.1 0.0035 1.2E-07 66.6 12.8 187 130-325 38-254 (861)
73 2vgl_A Adaptor protein complex 97.0 0.013 4.3E-07 61.9 16.4 162 143-326 48-218 (621)
74 3dad_A FH1/FH2 domain-containi 97.0 0.0082 2.8E-07 58.9 13.0 148 172-327 128-289 (339)
75 2qk1_A Protein STU2; STU2P, XM 97.0 0.0021 7.3E-08 60.0 8.5 150 169-326 23-177 (249)
76 3dad_A FH1/FH2 domain-containi 96.6 0.05 1.7E-06 53.4 15.2 181 128-314 115-326 (339)
77 2vgl_A Adaptor protein complex 96.3 0.011 3.8E-07 62.3 9.9 107 128-238 104-221 (621)
78 3b2a_A TON_1937, putative unch 96.2 0.021 7.1E-07 53.7 9.7 121 204-326 33-181 (265)
79 3eg5_B Protein diaphanous homo 95.8 1.4 4.9E-05 43.6 21.7 154 186-348 91-275 (383)
80 3tjz_B Coatomer subunit gamma; 95.5 0.29 9.9E-06 48.3 15.2 131 170-325 76-206 (355)
81 2of3_A ZYG-9; multifunctional 95.4 0.59 2E-05 44.3 16.4 160 146-325 59-237 (266)
82 2db0_A 253AA long hypothetical 95.1 1.9 6.5E-05 39.3 18.3 187 114-333 31-219 (253)
83 3u0r_A Apoptosis inhibitor 5; 94.9 0.59 2E-05 47.9 15.4 155 130-323 7-162 (507)
84 2x19_B Importin-13; nuclear tr 94.4 0.98 3.4E-05 48.9 16.9 138 172-326 459-601 (963)
85 2f31_A Diaphanous protein homo 94.3 0.89 3E-05 41.8 14.0 143 197-348 37-209 (233)
86 2fv2_A RCD1 required for cell 94.2 0.97 3.3E-05 42.7 14.0 195 131-334 3-233 (268)
87 1x5b_A Signal transducing adap 94.1 0.18 6.2E-06 44.3 8.6 104 116-232 19-124 (163)
88 1mhq_A ADP-ribosylation factor 93.9 0.27 9.2E-06 42.5 9.0 107 116-235 5-118 (148)
89 1juq_A ADP-ribosylation factor 93.8 0.2 6.8E-06 44.4 8.2 107 116-235 17-130 (171)
90 3ldz_A STAM-1, signal transduc 93.7 0.23 7.7E-06 42.5 8.2 103 117-232 10-113 (140)
91 3g2s_A C-terminal fragment of 93.7 0.31 1.1E-05 42.2 9.1 108 116-236 15-129 (149)
92 3zyq_A Hepatocyte growth facto 93.2 0.46 1.6E-05 43.7 10.1 106 116-234 12-119 (226)
93 3tjz_B Coatomer subunit gamma; 93.1 3 0.0001 40.9 16.4 142 169-324 111-279 (355)
94 2bnx_A Diaphanous protein homo 93.1 2.4 8.1E-05 42.0 15.7 138 203-348 46-213 (386)
95 1ho8_A Vacuolar ATP synthase s 93.0 0.091 3.1E-06 53.9 5.2 62 174-235 417-478 (480)
96 4hat_C Exportin-1; heat repeat 92.9 0.33 1.1E-05 54.2 9.9 149 174-327 465-621 (1023)
97 3ibv_A Exportin-T; karyopherin 92.0 1.5 5.2E-05 48.6 13.9 109 126-234 1-120 (980)
98 1wa5_C Importin alpha RE-expor 92.0 0.77 2.6E-05 50.2 11.4 145 171-325 464-629 (960)
99 1elk_A Target of MYB1; superhe 91.3 0.75 2.6E-05 39.9 8.5 103 116-231 20-128 (157)
100 2db0_A 253AA long hypothetical 90.7 2.3 8E-05 38.7 11.1 131 172-325 117-247 (253)
101 1dvp_A HRS, hepatocyte growth 90.6 0.95 3.3E-05 41.2 8.8 104 116-232 9-114 (220)
102 4ady_A RPN2, 26S proteasome re 90.4 7.1 0.00024 43.3 16.9 123 173-326 553-678 (963)
103 1ho8_A Vacuolar ATP synthase s 89.9 0.31 1.1E-05 49.9 5.3 72 204-277 395-476 (480)
104 1wa5_C Importin alpha RE-expor 89.8 2.2 7.4E-05 46.6 12.4 133 176-325 375-526 (960)
105 2x1g_F Cadmus; transport prote 89.7 1.8 6.2E-05 47.1 11.6 123 146-277 477-615 (971)
106 2x1g_F Cadmus; transport prote 89.5 1.9 6.5E-05 46.9 11.6 134 174-325 476-616 (971)
107 3m1i_C Exportin-1; heat repeat 88.5 2.8 9.7E-05 46.2 12.2 147 174-326 465-620 (1049)
108 1upk_A MO25 protein; transfera 88.1 15 0.0005 36.0 15.4 147 175-327 136-286 (341)
109 1lsh_A Lipovitellin (LV-1N, LV 87.6 7.4 0.00025 43.4 14.9 132 101-242 319-476 (1056)
110 1lrv_A LRV, leucine-rich repea 87.0 0.18 6.2E-06 47.1 1.2 60 145-227 62-121 (244)
111 4ffb_C Protein STU2; tubulin f 86.6 18 0.00061 33.1 14.9 142 170-324 17-168 (278)
112 2of3_A ZYG-9; multifunctional 86.2 12 0.00041 35.2 13.4 141 169-324 53-196 (266)
113 4ady_A RPN2, 26S proteasome re 86.1 6.2 0.00021 43.7 12.9 88 172-277 588-676 (963)
114 3eg5_B Protein diaphanous homo 84.9 22 0.00075 35.0 15.3 131 173-310 131-280 (383)
115 3rru_A TOM1L1 protein; structu 84.6 2.8 9.6E-05 36.2 7.6 109 116-237 20-134 (152)
116 2x19_B Importin-13; nuclear tr 84.5 6.3 0.00022 42.5 12.0 127 145-276 461-598 (963)
117 3qml_C Protein SLS1, nucleotid 84.1 4.6 0.00016 39.0 9.5 99 214-323 80-188 (315)
118 3ldz_A STAM-1, signal transduc 83.8 2.4 8.4E-05 35.9 6.8 91 223-324 24-114 (140)
119 3u0r_A Apoptosis inhibitor 5; 83.8 10 0.00034 38.9 12.3 157 114-304 28-186 (507)
120 2f31_A Diaphanous protein homo 83.3 14 0.00047 33.6 12.2 101 175-277 67-180 (233)
121 2bnx_A Diaphanous protein homo 81.7 23 0.00079 34.8 13.9 131 175-312 71-220 (386)
122 3gjx_A Exportin-1; transport, 81.5 20 0.00068 40.2 14.7 133 130-277 456-595 (1073)
123 3g2s_A C-terminal fragment of 81.3 4.3 0.00015 34.9 7.4 109 205-324 11-126 (149)
124 1mhq_A ADP-ribosylation factor 79.8 7.4 0.00025 33.3 8.4 90 224-324 21-116 (148)
125 2iw3_A Elongation factor 3A; a 79.8 22 0.00074 39.6 14.1 90 180-277 70-163 (986)
126 4hat_C Exportin-1; heat repeat 78.4 3.6 0.00012 45.9 7.5 119 206-334 453-576 (1023)
127 1x5b_A Signal transducing adap 78.4 4.8 0.00017 35.0 6.9 91 223-324 34-125 (163)
128 3a6p_A Exportin-5; exportin-5, 78.2 17 0.00056 41.1 12.9 102 133-234 13-126 (1204)
129 3gs3_A Symplekin, LD45768P; he 77.6 46 0.0016 31.0 21.0 174 147-327 29-246 (257)
130 3o2t_A Symplekin; heat repeat, 77.3 59 0.002 32.1 20.2 186 131-328 25-260 (386)
131 1lrv_A LRV, leucine-rich repea 77.1 1 3.6E-05 41.8 2.3 16 169-184 105-120 (244)
132 3m1i_C Exportin-1; heat repeat 76.6 55 0.0019 35.9 16.4 143 125-277 10-166 (1049)
133 1juq_A ADP-ribosylation factor 76.2 8.4 0.00029 33.7 7.8 109 205-324 13-128 (171)
134 3zyq_A Hepatocyte growth facto 76.1 4.5 0.00015 37.0 6.3 110 204-324 7-118 (226)
135 2iw3_A Elongation factor 3A; a 74.8 15 0.0005 40.9 11.0 100 170-277 103-204 (986)
136 3oc3_A Helicase MOT1, MOT1; re 73.8 2.8 9.4E-05 44.2 4.5 139 169-323 234-403 (800)
137 3ebb_A Phospholipase A2-activa 68.3 83 0.0028 29.8 16.5 161 176-346 116-284 (304)
138 3gjx_A Exportin-1; transport, 68.3 42 0.0014 37.6 12.9 106 127-234 24-142 (1073)
139 3ibv_A Exportin-T; karyopherin 67.8 65 0.0022 35.5 14.2 145 173-324 204-361 (980)
140 2xpp_A IWS1, ECU08_0440; trans 62.3 46 0.0016 28.4 9.2 79 194-277 51-136 (145)
141 1dvp_A HRS, hepatocyte growth 58.7 21 0.00072 32.1 6.9 90 224-324 25-115 (220)
142 1sz9_A PCF11 protein; RNA poly 58.5 29 0.001 29.3 7.4 91 173-275 22-112 (144)
143 1elk_A Target of MYB1; superhe 55.2 25 0.00086 30.1 6.5 92 223-324 35-130 (157)
144 2fv2_A RCD1 required for cell 37.8 2.6E+02 0.0089 26.2 14.2 146 175-325 14-175 (268)
145 1vdy_A Hypothetical protein (R 36.2 33 0.0011 29.1 4.1 93 223-325 30-131 (140)
146 3ebb_A Phospholipase A2-activa 35.5 2.9E+02 0.0098 26.0 17.2 188 104-306 76-287 (304)
147 3gs3_A Symplekin, LD45768P; he 34.8 1.4E+02 0.0048 27.5 8.6 75 169-243 151-253 (257)
148 3l9t_A Putative uncharacterize 33.2 70 0.0024 29.6 6.0 91 174-277 116-207 (240)
149 4flb_A Regulation of nuclear P 31.8 39 0.0013 27.6 3.8 55 171-235 17-71 (132)
150 3nfq_A Transcription factor IW 30.7 2.4E+02 0.0083 24.5 8.8 79 194-277 66-151 (170)
151 1upk_A MO25 protein; transfera 30.2 3.8E+02 0.013 25.9 13.0 114 200-325 74-194 (341)
152 3gae_A Protein DOA1; UFD3, CDC 30.1 1.2E+02 0.0042 27.7 7.3 158 104-277 34-217 (253)
153 1et1_A Parathyroid hormone; he 27.8 31 0.0011 22.3 1.8 13 112-124 19-31 (34)
154 1vsy_5 Proteasome activator BL 26.2 1.6E+02 0.0056 32.5 8.6 151 121-277 786-966 (997)
155 1bwx_A Parathyroid hormone; pe 25.8 34 0.0012 22.7 1.8 13 112-124 19-31 (39)
156 3h3g_B Parathyroid hormone-rel 25.5 41 0.0014 20.0 1.9 17 108-125 5-21 (24)
157 3o2t_A Symplekin; heat repeat, 25.1 4.9E+02 0.017 25.4 11.8 115 203-324 62-183 (386)
158 3l9t_A Putative uncharacterize 23.2 4.4E+02 0.015 24.2 15.5 131 170-328 79-211 (240)
159 1nkd_A ROP; atomic resolution 23.2 1.9E+02 0.0064 21.1 5.5 42 346-387 22-64 (65)
160 2xpp_A IWS1, ECU08_0440; trans 22.5 2.2E+02 0.0077 24.0 6.9 61 284-349 50-116 (145)
161 3a6p_A Exportin-5; exportin-5, 21.3 6.3E+02 0.022 28.2 12.3 131 174-324 25-162 (1204)
162 3oc3_A Helicase MOT1, MOT1; re 20.6 2.3E+02 0.0078 30.1 7.6 133 171-323 183-327 (800)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=100.00 E-value=2.4e-36 Score=294.42 Aligned_cols=241 Identities=23% Similarity=0.262 Sum_probs=202.0
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHhhccccccc------------c-c
Q 016423 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNS----------TLSLEDSQRALQELLILVEPIDNAN------------G-Q 170 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~----------~~s~e~~~~aLd~Le~lve~IDnAn------------~-l 170 (390)
..||.++|+ ++++|+++||+++.+|.++ +.+.++|..||+.|.++++++|||+ . +
T Consensus 13 ~~~~~~~~~--~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~l 90 (296)
T 1xqr_A 13 LVPRGSHMR--GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY 90 (296)
T ss_dssp -------CC--SCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTT
T ss_pred hHHHHHHHc--CCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHH
Confidence 468898886 5699999999999999997 4567899999999999999999998 6 9
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
|.++++.||..|+|+||++++|||.+|+.+++.|++|+|+.+|+++ +..++.+|+||||+++|+++++++.|...||++
T Consensus 91 L~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~ 170 (296)
T 1xqr_A 91 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS 170 (296)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999965 678999999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhH
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 329 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~ 329 (390)
+|+.+|+++ +.+++++|+|+|++|+. .+++.+..+++.|+++.|+.+|.+++.+++++|+.+|.+|+...+..
T Consensus 171 ~L~~lL~~~--d~~v~~~A~~aLs~L~~-----~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 171 VLMRAMQQQ--VQKLKVKSAFLLQNLLV-----GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHHSS--CHHHHHHHHHHHHHHHH-----HCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHh-----CChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 999999986 78899999999999995 46788899999999999999999999999999999999999864332
Q ss_pred HHHHHhhCCc-HHHHHHHHHHHHHhhh---hhhhhhhHHHH
Q 016423 330 ALVLKDFCGL-DTALERLRQQLQEVML---EEDQRDYAMDV 366 (390)
Q Consensus 330 r~~~~~~~gL-~~~L~~Lr~~l~el~~---~e~~~ey~~dl 366 (390)
...++ .. ......|+..++.+.. .+|..+|+..|
T Consensus 244 ~~~~~---~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~i 281 (296)
T 1xqr_A 244 VRECR---EPELGLEELLRHRCQLLQQHEEYQEELEFCEKL 281 (296)
T ss_dssp HHHHH---CGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHh---ccHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 22222 22 1234555555666552 24556666555
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.80 E-value=1.1e-18 Score=157.18 Aligned_cols=171 Identities=18% Similarity=0.181 Sum_probs=152.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|+++++.+|..|+|+|++++..++..+..+++.|++|.|+.+|.+++..++..|+++|++++.+++.....+.+.||+
T Consensus 19 ~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 98 (210)
T 4db6_A 19 QQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence 47899999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
+.|+.+|.++ +..++..|+++|.+|+. .++.....+.+.|+++.|+.+|.+++..+++.|+.+|.+|+..++.
T Consensus 99 ~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 99 PALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCC--cHHHHHHHHHHHHHHHc-----CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 9999999987 67899999999999994 4555667788999999999999999999999999999999998667
Q ss_pred HHHHHHhhCCcHHHHHHH
Q 016423 329 EALVLKDFCGLDTALERL 346 (390)
Q Consensus 329 ~r~~~~~~~gL~~~L~~L 346 (390)
.+..+...+++..++..|
T Consensus 172 ~~~~~~~~g~i~~L~~ll 189 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQ 189 (210)
T ss_dssp HHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 777776444455555444
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.79 E-value=4.4e-18 Score=155.66 Aligned_cols=171 Identities=18% Similarity=0.206 Sum_probs=151.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
++|.++++.+|..|+++|++++.+++..+..+.+.|++|.|+.++.+++..++..|+++|++++.+++.....+...|++
T Consensus 51 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 130 (252)
T 4hxt_A 51 KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGV 130 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 57888899999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
+.|+.+|.++ +..++..++++|.+|+. .++.....+.+.|+++.|+.+|.+++..+++.|+.+|.+|+...+.
T Consensus 131 ~~L~~~l~~~--~~~~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 203 (252)
T 4hxt_A 131 EVLVKLLTST--DSEVQKEAARALANIAS-----GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS 203 (252)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHH
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHc-----CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999986 67799999999999994 3455567888999999999999999999999999999999986666
Q ss_pred HHHHHHhhCCcHHHHHHH
Q 016423 329 EALVLKDFCGLDTALERL 346 (390)
Q Consensus 329 ~r~~~~~~~gL~~~L~~L 346 (390)
.++.+...+++..++..|
T Consensus 204 ~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 666676444445554444
No 4
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.77 E-value=1.1e-17 Score=150.62 Aligned_cols=149 Identities=16% Similarity=0.235 Sum_probs=138.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.++++.+|..|+|+|++++.+++..+..+++.|++|.|+.+|++.+..++..|+++|++++.+++.....+.+.|++
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 140 (210)
T 4db6_A 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|+.+|.++ +..++..|+++|.+|+. .++..+..+.+.|+++.|+.++.+++..++++|+.+|.+|..
T Consensus 141 ~~L~~ll~~~--~~~v~~~a~~aL~~l~~-----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 141 PALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHHT-----SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHc-----CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999986 67899999999999994 346667788999999999999999999999999999999874
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.77 E-value=6.3e-18 Score=156.00 Aligned_cols=171 Identities=17% Similarity=0.205 Sum_probs=150.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.++++.+|..|+++|++++.+++..+..+++.|++|.|+.+|++++..++..|+++|++++.+.+.....+...||+
T Consensus 61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 140 (252)
T 4db8_A 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCH
Confidence 57788889999999999999999999999999999999999999999889999999999999999877766889999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 328 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~ 328 (390)
+.|+.+|.++ +..++..|+++|.+|+. .++.....+.+.|+++.|+.+|.+++..+++.|+.+|.+|+...+.
T Consensus 141 ~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 213 (252)
T 4db8_A 141 PALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 213 (252)
T ss_dssp HHHHHGGGCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHc-----CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 9999999986 67899999999999994 3455667788999999999999999999999999999999977666
Q ss_pred HHHHHHhhCCcHHHHHHH
Q 016423 329 EALVLKDFCGLDTALERL 346 (390)
Q Consensus 329 ~r~~~~~~~gL~~~L~~L 346 (390)
.+..+...+++..++..|
T Consensus 214 ~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 214 QKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHCCcHHHHHHHh
Confidence 666666444455554444
No 6
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.73 E-value=1e-16 Score=151.15 Aligned_cols=175 Identities=13% Similarity=0.148 Sum_probs=150.7
Q ss_pred ccCCCCCh--HHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~--~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
++|.++++ .++..|+++|.+++.+|+..+..+.+.|++|+|+++|++++..++..|+|||.+|..+++.+...+.++|
T Consensus 15 ~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G 94 (233)
T 3tt9_A 15 SMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELN 94 (233)
T ss_dssp HTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 47888887 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc----------------CCChh
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA----------------SADLD 310 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~----------------~~d~~ 310 (390)
|++.|+.+|.+. .+..++..|+.+|.+|.. .+..+..+.+. .++.|++++. ..+.+
T Consensus 95 aI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~------~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 95 GVPRLLQVLKQT-RDLETKKQITGLLWNLSS------NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHT------SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred CHHHHHHHHccC-CCHHHHHHHHHHHHHHHc------ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999842 156789999999999984 55666777764 5888888763 13679
Q ss_pred HHHHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHHH
Q 016423 311 LQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQ 351 (390)
Q Consensus 311 v~EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l~ 351 (390)
+++.|..||.+|...+++.|+.++...|+ +.++..|+....
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence 99999999999998777899999866676 777787776554
No 7
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.72 E-value=1.2e-16 Score=146.06 Aligned_cols=171 Identities=17% Similarity=0.197 Sum_probs=152.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+|.++++++|..|+++|++++.+++..+..+.+.|++|.|+.++.+++..++..|+++|++++.+++.....+...||++
T Consensus 10 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 89 (252)
T 4hxt_A 10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 89 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 57788899999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhH
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 329 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~ 329 (390)
.|+.+|.++ +..++..|+++|.+|+. .+++.+..+.+.|+++.++.+|.+++..++..++.+|.+|+...+..
T Consensus 90 ~l~~ll~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 90 VLVKLLTST--DSEVQKEAARALANIAS-----GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHHHHTTCS--SHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 999999976 67899999999999994 45667778889999999999999999999999999999999876666
Q ss_pred HHHHHhhCCcHHHHHHHH
Q 016423 330 ALVLKDFCGLDTALERLR 347 (390)
Q Consensus 330 r~~~~~~~gL~~~L~~Lr 347 (390)
+..+...+.+..++..|+
T Consensus 163 ~~~~~~~~~i~~L~~ll~ 180 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLT 180 (252)
T ss_dssp HHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHC
Confidence 566664555566666554
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.70 E-value=2.1e-16 Score=145.72 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=153.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhccc-ccc------c------ccCCCCChHHHHHHHHHHHHHhhCChHHHHH
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNA------N------GQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~I-DnA------n------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~ 199 (390)
+...+..+.+++ .+-+..|+..|..+...- ++. + .+|+++++.+|..|+|+|++++.+++..+..
T Consensus 56 i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (252)
T 4db8_A 56 LPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (252)
T ss_dssp HHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence 344455555443 555566666666665421 111 1 6788899999999999999999998877788
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 279 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~ 279 (390)
+.+.|++|.|+.++.+++..++..|+++|++++.+++.....+...|+++.|+.+|.++ +..++..|+++|.+|+.
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-- 209 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-- 209 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTT--
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhc--
Confidence 99999999999999998889999999999999999988888899999999999999986 67899999999999994
Q ss_pred hhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 280 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 280 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.++..+..+.+.|+++.|+.++.+.+.++++.|+.+|.+|+.
T Consensus 210 ---~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 210 ---GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred ---CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 456667788999999999999999999999999999998864
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.67 E-value=7.2e-15 Score=151.58 Aligned_cols=207 Identities=18% Similarity=0.197 Sum_probs=162.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcc-----ccc---cc------ccCC-CCChHHHHHHHHHHHHHhhCChHHHH
Q 016423 134 QIAIDDLNNSTLSLEDSQRALQELLILVEP-----IDN---AN------GQLN-HPDTDIRKISAWILGKASQNNPLVQK 198 (390)
Q Consensus 134 k~~l~~l~~~~~s~e~~~~aLd~Le~lve~-----IDn---An------~lL~-s~~~~vR~~Aa~vLgta~QNNp~~Q~ 198 (390)
.+.++.+++ .+.+.+..|...+..+... ||. ++ .+|. ++++.+|..|||+|++++..++..+.
T Consensus 60 ~~~v~~l~s--~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 60 EDIVKGINS--NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHTS--SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 334444433 2455555666666555422 111 22 5675 56689999999999999999999999
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCC---hhHHHHHHHHHHHHHH
Q 016423 199 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGDL 275 (390)
Q Consensus 199 ~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~---~d~klr~KA~~LLs~L 275 (390)
.+++.|++|.|+.+|.+++..++..|+|||++|+.+++.....+...||++.|+.+|.++. ....+++.+++.++++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998653 1345788999999999
Q ss_pred hhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHH
Q 016423 276 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 276 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
+. ............|+++.|+.+|.+++.+++..|+.+|..|+....+..+.+...+.+..++..|+
T Consensus 218 ~~-----~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 218 CR-----NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HC-----CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred hh-----cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 95 23334444555789999999999999999999999999999876655555654555566666554
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.67 E-value=7.6e-16 Score=157.06 Aligned_cols=171 Identities=14% Similarity=0.183 Sum_probs=149.8
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+|+++++++|..|+++|++++.+|+..+..+.+.|++|.|+.+|++++..++..|++||.+|..+++++...+.+.||++
T Consensus 10 ~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~ 89 (457)
T 1xm9_A 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIR 89 (457)
T ss_dssp HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 56788999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHhc-CCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc--------CC--------ChhHH
Q 016423 250 MLQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------SA--------DLDLQ 312 (390)
Q Consensus 250 ~L~~lL~-s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~--------~~--------d~~v~ 312 (390)
.|+.+|. ++ +..++..|+|+|++|+. +++.+..+.+ |.++.|+.+|. ++ +.+++
T Consensus 90 ~Lv~lL~~~~--~~~~~~~a~~aL~nLa~------~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 90 EAVSLLRRTG--NAEIQKQLTGLLWNLSS------TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHHHT------SSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHHHHhhCC--CHHHHHHHHHHHHHHhc------CHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999998 54 67799999999999994 4677888888 99999999993 22 45666
Q ss_pred HHHHHHHHHHHhcChhHHHHHHhh-CCcHHHHHHHHHHH
Q 016423 313 EKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQL 350 (390)
Q Consensus 313 EkAL~aL~~L~~~~~~~r~~~~~~-~gL~~~L~~Lr~~l 350 (390)
..|+.+|.+|... +..++.+... +++.+++..|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 6999999999987 6788888754 55688888887653
No 11
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.67 E-value=1.9e-15 Score=150.29 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=149.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCccchHHHH-Hc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VE 245 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~-~~ 245 (390)
.+|.+++++++..|+|+|++++.+ |+..++.+.+.|++|+|+++| ++.+..++..|+.||.+|..+++..+..+. ..
T Consensus 134 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~ 213 (354)
T 3nmw_A 134 AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 213 (354)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHST
T ss_pred HHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhc
Confidence 678899999999999999999986 889999999999999999975 556678899999999999887777777887 68
Q ss_pred CcHHHHHHHhcCCChh--HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 246 AGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d--~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
||++.|+.+|.+++.. ..++.+|+++|++|+... ..+++.+..+.+.|.++.|+.+|.+.+..+++.|+.+|.+|+
T Consensus 214 Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 9999999999875322 258999999999998410 035667888999999999999999999999999999999999
Q ss_pred hcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 324 QLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 324 ~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
...++.++.+...+++.++++.|++
T Consensus 292 ~~~~~~~~~i~~~G~i~~Lv~LL~s 316 (354)
T 3nmw_A 292 ARNPKDQEALWDMGAVSMLKNLIHS 316 (354)
T ss_dssp SSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 6556777778756666777666643
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.66 E-value=1.6e-15 Score=156.93 Aligned_cols=173 Identities=18% Similarity=0.202 Sum_probs=148.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
.+|.++++.+|..|+|+||+++.++|.+++.+++.|++++|+.+|...+ ..+...++|++++++++..+......
T Consensus 169 ~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 248 (529)
T 3tpo_A 169 SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 248 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 6889999999999999999999999999999999999999999998654 34678899999999999877766666
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..++++.|..+|.++ +..++..|+|+|++|+. ..++....+.+.|+++.|+.+|.+++..++..++.+|++|+
T Consensus 249 ~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~l~~-----~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 321 (529)
T 3tpo_A 249 VEQILPTLVRLLHHN--DPEVLADSCWAISYLTD-----GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 321 (529)
T ss_dssp HHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHS-----SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHhcCC--cHHHHHHHHHHHHHhhh-----hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 778999999999986 67789999999999994 44556677889999999999999999999999999999999
Q ss_pred hcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 324 QLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 324 ~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
+..+.....+...+++..++..|++
T Consensus 322 ~~~~~~~~~i~~~g~l~~L~~LL~~ 346 (529)
T 3tpo_A 322 TGTDEQTQKVIDAGALAVFPSLLTN 346 (529)
T ss_dssp TSCHHHHHHHHHTTGGGGHHHHTTC
T ss_pred ccchHHHHHHhhcccHHHHHHHHcC
Confidence 8776666666655666666665543
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.64 E-value=1.7e-14 Score=149.11 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=147.9
Q ss_pred ccC-CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL-~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+| .++++.++..|+|+|++++.+++.....+++.|++|.|+.+|.+++..++..|+|||++|+.+++.....+...||
T Consensus 126 ~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~ 205 (529)
T 3tpo_A 126 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGA 205 (529)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCC
Confidence 456 4667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC---hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 248 DLMLQDILGNSS---FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 248 l~~L~~lL~s~~---~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
++.|+.+|..+. ....+++.+++.+++++. ............|+++.|+.+|.+++.+++..|+.+|..|+.
T Consensus 206 i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~-----~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 206 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR-----NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 280 (529)
T ss_dssp HHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC-----CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh-----cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 999999998643 235678899999999995 333444455567899999999999999999999999999998
Q ss_pred cChhHHHHHHhhCCcHHHHHHHH
Q 016423 325 LRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 325 ~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
...+..+.+...+.+..++..|+
T Consensus 281 ~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 281 GPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHT
T ss_pred hhhhhHHHHHhccchHHHHHHhc
Confidence 77666666664555566666654
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.64 E-value=1.9e-14 Score=147.41 Aligned_cols=207 Identities=15% Similarity=0.174 Sum_probs=162.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc--------cc------ccCCCCC-hHHHHHHHHHHHHHhhCChHHH
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--------AN------GQLNHPD-TDIRKISAWILGKASQNNPLVQ 197 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDn--------An------~lL~s~~-~~vR~~Aa~vLgta~QNNp~~Q 197 (390)
+...++.+.++ +.+.+..|+..|..++..-++ ++ .+|.+++ +.+|..|+|+|++++..++..+
T Consensus 76 l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34444445432 355566666666555432221 11 5677766 9999999999999999999999
Q ss_pred HHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 198 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 198 ~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
..+++.|++|.|+.+|.+++..++..|+++|++++.+.+.....+...|+++.|+.+|..+ .+..++..++++|++|+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence 9999999999999999998899999999999999999998889999999999999999543 367899999999999994
Q ss_pred hhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 278 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 278 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
..+ ........|+++.|+.+|.+++..++..|+.+|.+|+...+...+.+...+.+..++..|+.
T Consensus 233 -----~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~ 297 (528)
T 4b8j_A 233 -----GKP-QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 297 (528)
T ss_dssp -----SSS-CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC
T ss_pred -----CCC-CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC
Confidence 222 33344568999999999999999999999999999998765544555545666666666643
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.64 E-value=6e-15 Score=152.18 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=144.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhCCccchHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
.+|.++++++|..|+|+|++++.++|.+++.+++.|++++|+.++.+.+ ..+...++|++++++++..+......
T Consensus 150 ~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 229 (510)
T 3ul1_B 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 229 (510)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHH
Confidence 5789999999999999999999999999999999999999999998654 34677899999999999877766666
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..++++.|..+|.++ +..++..|+++|++|+. ..++....+.+.|+++.|+.+|.+++..++..++++|++|+
T Consensus 230 ~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~-----~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~ 302 (510)
T 3ul1_B 230 VEQILPTLVRLLHHN--DPEVLADSCWAISYLTD-----GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 302 (510)
T ss_dssp HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTS-----SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhh-----chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh
Confidence 678899999999986 67799999999999984 34455677889999999999999999999999999999999
Q ss_pred hcChhHHHHHHhhCCcHHHHHHH
Q 016423 324 QLRTTEALVLKDFCGLDTALERL 346 (390)
Q Consensus 324 ~~~~~~r~~~~~~~gL~~~L~~L 346 (390)
...+.....+...+++..++..|
T Consensus 303 ~~~~~~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 303 TGTDEQTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp TSCHHHHHHHHHTTGGGGCC-CT
T ss_pred cCCHHHHHHHhhccchHHHHHHh
Confidence 87665555555455554444433
No 16
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.63 E-value=2.4e-15 Score=146.18 Aligned_cols=166 Identities=14% Similarity=0.023 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHH
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 254 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~-LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~l 254 (390)
.+-|..|+..|..++.+ ......|.+.|++|+|+. +|.+++..++..|+|+|++++.+++..+..+++.||++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46788999999999886 557778999999999999 9999889999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 255 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 255 L~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
|.++ ++..++++|+|+|++|+. +++...+.|.+.|.++.|+.+|++++..++.+|+.+|.+|+...++.++.+.
T Consensus 133 L~~~-~~~~v~~~A~~ALsnl~~-----~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 133 LDRD-ACDTVRVKALFAISCLVR-----EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HccC-CCHHHHHHHHHHHHHHHc-----CCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9854 256799999999999994 4555666788899999999999999999999999999999987666777777
Q ss_pred hhCCcHHHHHHHHH
Q 016423 335 DFCGLDTALERLRQ 348 (390)
Q Consensus 335 ~~~gL~~~L~~Lr~ 348 (390)
..+.+.+++..|+.
T Consensus 207 ~~g~i~~Lv~LL~~ 220 (296)
T 1xqr_A 207 SMGMVQQLVALVRT 220 (296)
T ss_dssp HTTHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHcC
Confidence 56666777776664
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.63 E-value=4e-14 Score=145.43 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHHHhhcccccc--------c------ccCCCC-ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHH
Q 016423 146 SLEDSQRALQELLILVEPIDNA--------N------GQLNHP-DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 210 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnA--------n------~lL~s~-~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll 210 (390)
+.+.+..|+..|..++..-++. + .+|.++ ++.+|..|+|+|++++..++..+..+++.|++|.|+
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 179 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 179 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 3555666666666665432111 1 678776 899999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchh
Q 016423 211 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 290 (390)
Q Consensus 211 ~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~ 290 (390)
.+|.+++..++..|+++|++++.+.+.....+...|+++.|+.+|.++ +..++..|+++|++|+. ........
T Consensus 180 ~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~-----~~~~~~~~ 252 (530)
T 1wa5_B 180 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR-----GKKPQPDW 252 (530)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC-----CSSSCCCH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhC-----CCCCCCcH
Confidence 999988889999999999999999888888889999999999999975 67799999999999994 22233445
Q ss_pred hhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHH
Q 016423 291 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 291 l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
....++++.|+.+|.+++..++..|+.+|.+|+...+...+.+...+.+..++..|+
T Consensus 253 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 667899999999999999999999999999999865554555553455566666554
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.62 E-value=2.8e-14 Score=146.08 Aligned_cols=208 Identities=16% Similarity=0.159 Sum_probs=163.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc-cccc------c------ccCCCCChHHHHHHHHHHHHHhhCChHHHHH
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNA------N------GQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~-IDnA------n------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~ 199 (390)
+...++.+.++ .+.+-+..|+..|..+... -++. + .+|.++++.+|..|+|+|++++.+++.++..
T Consensus 119 v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 119 VPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp HHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 33444555443 1255566666666666653 1211 1 6788899999999999999999999999999
Q ss_pred HHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhh
Q 016423 200 VLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 278 (390)
Q Consensus 200 ~le~g~l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~ 278 (390)
+.+.|++|+|+.++ .+.+..++..|+|+|++++++.+... .....|+++.|+.+|.++ +..++..|+++|++|+.
T Consensus 198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~- 273 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSN--DEEVLTDACWALSYLSD- 273 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTS-
T ss_pred HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHc-
Confidence 99999999999999 55667899999999999999975543 344589999999999876 67799999999999984
Q ss_pred hhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHH
Q 016423 279 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 349 (390)
Q Consensus 279 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~ 349 (390)
..+.....+.+.|+++.|+.+|.+++..+++.|+.+|++|+...+...+.+...+.+..++..|++.
T Consensus 274 ----~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 274 ----GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp ----SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred ----CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 3444456788999999999999999999999999999999987665565565444456666666543
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.61 E-value=1.2e-14 Score=153.35 Aligned_cols=174 Identities=14% Similarity=0.128 Sum_probs=150.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~-~~~a~~~f~~~gG 247 (390)
.+|.+++++++..|+|+|.+++..++..+..+.+.|+||+|+.+|.+.+..++..|++||.+|..+ ++.+...+.++||
T Consensus 55 ~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~Ga 134 (584)
T 3l6x_A 55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDG 134 (584)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCC
Confidence 367889999999999999999999999999999999999999999999999999999999999986 6889999999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc------------------CCCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA------------------SADL 309 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~------------------~~d~ 309 (390)
++.|+.+|.+.. +..++..|+++|.+|+. +++.+..+.+ +.++.|+.++. ..+.
T Consensus 135 Ip~LV~LL~s~~-~~~~~e~aa~aL~nLS~------~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 135 VPALVRLLRKAR-DMDLTEVITGTLWNLSS------HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHHHHHHHCC-SHHHHHHHHHHHHHHTT------SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHHhC------CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 999999999632 56789999999999984 5666777775 56899999871 2367
Q ss_pred hHHHHHHHHHHHHHhcChhHHHHHHhhCCc-HHHHHHHHHHH
Q 016423 310 DLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQL 350 (390)
Q Consensus 310 ~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~l 350 (390)
++++.|..||.+|+...++.|+.++...|+ ++++..|++..
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~ 248 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI 248 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 999999999999999887778888866676 57777777653
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.61 E-value=2.9e-14 Score=141.36 Aligned_cols=174 Identities=19% Similarity=0.182 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHhhcccc-c------cc------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhh
Q 016423 147 LEDSQRALQELLILVEPID-N------AN------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 213 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~ID-n------An------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL 213 (390)
.+-+..+...|..++...+ + ++ .+|.++++.+|..|+++|++++.+++...+.+++.|++|.|+.++
T Consensus 206 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 285 (450)
T 2jdq_A 206 TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL 285 (450)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH
Confidence 3445556666666665321 1 11 678889999999999999999999999888899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh
Q 016423 214 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 293 (390)
Q Consensus 214 ~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~ 293 (390)
.+++..++..|+++|++++++++.....+.+.|+++.|+.+|.++ +.++|..|+++|.+|+.. ..++....+.+
T Consensus 286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~----~~~~~~~~l~~ 359 (450)
T 2jdq_A 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSG----GSAEQIKYLVE 359 (450)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH----CCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC----CCHHHHHHHHH
Confidence 998889999999999999999888888888899999999999976 677999999999999952 24455666778
Q ss_pred cCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 294 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 294 ~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.|+++.|+.+|...+..+++.|+.+|.+|+..+
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999754
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.61 E-value=9.6e-15 Score=150.06 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=149.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCccchHHHH-Hc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VE 245 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~-~~ 245 (390)
.+|.+++++++..|+|+|++++.+ ++..++.+.+.|++|+|+.+| .+.+..++..|+.||.+|..+++..+..+. ..
T Consensus 250 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~ 329 (458)
T 3nmz_A 250 AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 329 (458)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHST
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 578899999999999999999986 889999999999999999975 555678888899999999887777777887 78
Q ss_pred CcHHHHHHHhcCCChh--HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 246 AGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d--~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
||++.|+.+|.+++.. ..++.+|+++|++|+... ..+++.+..+++.|.++.|+.+|.+.+..+++.|+.+|.+|+
T Consensus 330 Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp THHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 9999999999876322 258999999999998410 035667888999999999999999999999999999999999
Q ss_pred hcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 324 QLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 324 ~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
...++.++.+...+++.++++.|++
T Consensus 408 ~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 408 ARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp SSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 6666777878766777777776643
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.59 E-value=2.7e-14 Score=146.71 Aligned_cols=195 Identities=16% Similarity=0.124 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHhhcccc-c------cc------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHh
Q 016423 146 SLEDSQRALQELLILVEPID-N------AN------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 212 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~ID-n------An------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~L 212 (390)
+.+-+..|...|..+...-+ + ++ .+|.++++.+|..|+|+|++++.+++..+..++..|++|.|+.+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 223 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence 34555566666666554321 1 11 56778899999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh
Q 016423 213 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 292 (390)
Q Consensus 213 L~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~ 292 (390)
+.+.+..++..|+++|++++++..+....+...++++.|..+|.++ +..++..|+++|.+|+. ..++....+.
T Consensus 224 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~-----~~~~~~~~~~ 296 (530)
T 1wa5_B 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSD-----GPQEAIQAVI 296 (530)
T ss_dssp GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHS-----SCHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhC-----CCHHHHHHHH
Confidence 9998889999999999999998745555667789999999999976 67799999999999994 3445566788
Q ss_pred hcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHH
Q 016423 293 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 293 ~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
+.|+++.|+.+|.+.+..+++.|+.+|.+|+...+...+.+...+.+..++..|+
T Consensus 297 ~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 297 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred hcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc
Confidence 8999999999999999999999999999999765554454543444455555443
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.58 E-value=9.2e-14 Score=137.70 Aligned_cols=171 Identities=18% Similarity=0.200 Sum_probs=142.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCC-ccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN-LAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~-~~a~~~f~~~g 246 (390)
.+|+++++.+|..|+|+|++++.+++..++.+++.|++|.|+.++.+ .+..++..|+++|++++++. +.....+. .+
T Consensus 114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~ 192 (450)
T 2jdq_A 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SP 192 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GG
T ss_pred HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HH
Confidence 67889999999999999999999999999999999999999999996 56889999999999999986 44433333 78
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+++.|..++.++ +..++..++++|.+|+. ..++....+.+.|+++.++.+|.+++..+++.|+.+|.+|+...
T Consensus 193 ~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 265 (450)
T 2jdq_A 193 CLNVLSWLLFVS--DTDVLADACWALSYLSD-----GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265 (450)
T ss_dssp GHHHHHHHTTCC--CHHHHHHHHHHHHHHTS-----SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHccC--CHHHHHHHHHHHHHHHC-----CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC
Confidence 999999999976 67799999999999984 33445567788999999999999999999999999999999876
Q ss_pred hhHHHHHHhhCCcHHHHHHHH
Q 016423 327 TTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 327 ~~~r~~~~~~~gL~~~L~~Lr 347 (390)
+...+.+...+.+..++..|+
T Consensus 266 ~~~~~~~~~~~~l~~L~~ll~ 286 (450)
T 2jdq_A 266 DIQTQVILNCSALQSLLHLLS 286 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHHTT
T ss_pred hHHHHHHHHCccHHHHHHHHc
Confidence 554444443344455555443
No 24
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.58 E-value=2.7e-14 Score=145.59 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=143.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHh
Q 016423 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 202 (390)
Q Consensus 136 ~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le 202 (390)
.+..|.++ +.+.+..|...|..++..-++.. .+|+++++.++..|+|+|.+++..|+..+..+.+
T Consensus 7 lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 7 AVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444443 23455556666665553322211 6889999999999999999999999999999999
Q ss_pred cCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhc--------CCC------hhHHHHHH
Q 016423 203 LGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG--------NSS------FEIRLHRK 267 (390)
Q Consensus 203 ~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~--------s~~------~d~klr~K 267 (390)
.|++|+|+++|. +.+.+++..|+|||++|..+ +.....+.. ||++.|+.+|. ++. .+..+++.
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 999999999999 77789999999999999998 777788888 99999999993 221 24668889
Q ss_pred HHHHHHHHhhhhhhcCCCCCchhhhhc-CchHHHHHhhcC------CChhHHHHHHHHHHHHH
Q 016423 268 AVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ADLDLQEKALAAIKNLL 323 (390)
Q Consensus 268 A~~LLs~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~~------~d~~v~EkAL~aL~~L~ 323 (390)
|+|+|++|+. +++.+..+.+. |+++.|+.+|.+ .+..++++++.+|.+|.
T Consensus 163 a~~aL~nLs~------~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 163 ATGCLRNLSS------ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HHHHHHHHTT------SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcc------CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 9999999994 36677888887 999999999986 46789999999999886
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.53 E-value=5.4e-14 Score=139.83 Aligned_cols=168 Identities=11% Similarity=0.077 Sum_probs=140.4
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CccchHHHHHcCcHHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLML 251 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~-~~~a~~~f~~~gGl~~L 251 (390)
.++.+|..|+|+|.+++.+++..+..+... |+||+|+.+|.+++..++..|.+||++|..+ ++.+...+.+.||++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 467899999999999999998888887655 5599999999998899999999999999986 66788899999999999
Q ss_pred HHHh-cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh-hcCchHHHHHhhcCCCh----hHHHHHHHHHHHHHh-
Q 016423 252 QDIL-GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR-DRFFLKSVVDLTASADL----DLQEKALAAIKNLLQ- 324 (390)
Q Consensus 252 ~~lL-~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~-~~g~v~~Lv~lL~~~d~----~v~EkAL~aL~~L~~- 324 (390)
+.+| +++ +..++..|+.+|.+|+. ..++.+..+. ..|.++.|+.+|.+.+. ++++.|+.+|.+|..
T Consensus 176 v~lL~~~~--~~~~~~~A~~aL~nLs~-----~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 176 MECALEVK--KESTLKSVLSALWNLSA-----HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp HHHHHHCC--CHHHHHHHHHHHHHHHT-----TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHc-----cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 9985 444 56789999999999984 2334455565 79999999999987643 599999999999986
Q ss_pred --cChhHHHHHHhhCCcHHHHHHHHH
Q 016423 325 --LRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 325 --~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
..++.++.+...+++.+++..|++
T Consensus 249 ~a~~~~~~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 249 IATNEDHRQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 456778888866677888888764
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.49 E-value=4.2e-13 Score=146.14 Aligned_cols=210 Identities=10% Similarity=-0.011 Sum_probs=158.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccc-------cc------ccCCCCChHHHHHHHHHHHHHhhCCh----
Q 016423 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-------AN------GQLNHPDTDIRKISAWILGKASQNNP---- 194 (390)
Q Consensus 132 ~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDn-------An------~lL~s~~~~vR~~Aa~vLgta~QNNp---- 194 (390)
+.+.++..|.++..+.+.+..|.+-|.||..+-+. ++ .+|+++++.++..|+|+|++++...+
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~ 457 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence 34445555555544556666777777777655221 11 57788999999999999999998642
Q ss_pred -------------------------HHH---HHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 195 -------------------------LVQ---KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 195 -------------------------~~Q---~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.++ +.+++.|++|.|+.++++.++.++..|.|||+++..+ +.....+.++|
T Consensus 458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~G 536 (810)
T 3now_A 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEG 536 (810)
T ss_dssp CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTT
T ss_pred hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCC
Confidence 234 6789999999999999999999999999999999964 66888999999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC-chhhhhcCchHHHHHhhcCC-ChhHHHHHHHHHHHHHh
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~-d~~v~EkAL~aL~~L~~ 324 (390)
|+++|+.+|.++ +...|..|+|.|++|+.. .++.. ...-...|+++.|+.+|.++ +...+..|+.||.+|+.
T Consensus 537 aip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~----~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 537 GVKALLRMALEG--TEKGKRHATQALARIGIT----INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610 (810)
T ss_dssp HHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHccC--CHHHHHHHHHHHHHHhcC----CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 999999999986 567899999999999962 23321 00011246999999999876 33445789999999999
Q ss_pred cChhHHHHHHhhCCcHHHHHHHHH
Q 016423 325 LRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 325 ~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
.++..++.+...+++.+++..|.+
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL~s 634 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYLME 634 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcC
Confidence 876666667656777777776654
No 27
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.48 E-value=2.8e-13 Score=147.52 Aligned_cols=171 Identities=12% Similarity=0.022 Sum_probs=145.8
Q ss_pred ccCCCCCh-HHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHH-cC
Q 016423 169 GQLNHPDT-DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EA 246 (390)
Q Consensus 169 ~lL~s~~~-~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~-~g 246 (390)
.+|.++.. ..+..|+|+|++++..++..++.+++.|++|+|+.++.+++..++..|+++|++|+.+ +..+..|.. .|
T Consensus 587 ~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g 665 (810)
T 3now_A 587 NLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNND 665 (810)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSS
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccC
Confidence 57776533 4567899999999999999999999999999999999998888999999999999986 557788885 67
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh-cCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
++++|+.++.++ +..+|..|+|+|++|+. +++.....+++ .|+++.|+.+|.++|..++..|+.+|.+|+..
T Consensus 666 ~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~-----~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 666 RVKFLALLCEDE--DEETATACAGALAIITS-----VSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHGGGCS--SHHHHHHHHHHHHHHHH-----HCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 899999999986 67899999999999995 24556667777 89999999999999999999999999999987
Q ss_pred ChhHHHHHHhhCCcHHHHHHHH
Q 016423 326 RTTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 326 ~~~~r~~~~~~~gL~~~L~~Lr 347 (390)
++++...+...++++++...|+
T Consensus 739 s~e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 739 GEEIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp CHHHHHHHHTSTHHHHHTTSCC
T ss_pred CHHHHHHHHHCCCHHHHHHHHh
Confidence 7777777775555666666553
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.47 E-value=2.6e-12 Score=130.13 Aligned_cols=209 Identities=14% Similarity=0.152 Sum_probs=154.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHH
Q 016423 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 132 ~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~ 199 (390)
.+...+..+.+. .+.+-+..+...|..+...-++.. .+|+++++.++..|+++|++++.+++..+..
T Consensus 60 ~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 138 (529)
T 1jdh_A 60 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138 (529)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444555432 245556666666666555433221 6788999999999999999999998889999
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 279 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~ 279 (390)
+.+.|++|.|+.++.+++..++..+..+|++++.+++.....+...||++.|+.+|.++. +...+..++.+|.+|+.
T Consensus 139 i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-- 215 (529)
T 1jdh_A 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-- 215 (529)
T ss_dssp HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT--
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc--
Confidence 999999999999999988889999999999999999999999999999999999987542 33344445555555542
Q ss_pred hhcCCCCCchhhhh---------------------------------------cCchHHHHHhhcCCChhHHHHHHHHHH
Q 016423 280 LENMHKVEPPLFRD---------------------------------------RFFLKSVVDLTASADLDLQEKALAAIK 320 (390)
Q Consensus 280 l~~~~~~~~~~l~~---------------------------------------~g~v~~Lv~lL~~~d~~v~EkAL~aL~ 320 (390)
+++.+..+.+ .|+++.++.+|.+++.++++.|+.+|.
T Consensus 216 ----~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 216 ----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp ----STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1222222222 356677777777778889999999999
Q ss_pred HHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 321 NLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 321 ~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
+|....++.+..+...+++..++..|+.
T Consensus 292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 292 NLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 9988766677777766777888877764
No 29
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.47 E-value=7.1e-13 Score=136.16 Aligned_cols=151 Identities=14% Similarity=0.041 Sum_probs=133.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHH-hcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhh---CCccchHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFV----EEAVKALYTVSSLIR---NNLAGQEM 241 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~l-e~g~l~~Ll~LL~s~~~----~vr~kAL~ALSsLiR---~~~~a~~~ 241 (390)
++.+.++.++..|+.+|++++..++..|..+. ..|++|.|+.+|.+.++ +++..|.++|+++.. .++.....
T Consensus 295 Ll~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 35678899999999999999987777888887 78999999999987653 488899999999987 78888889
Q ss_pred HHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHH
Q 016423 242 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 321 (390)
Q Consensus 242 f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~ 321 (390)
+.+.||++.|+.+|.+. +..++..|+++|++|+. .+++.+..+.+.|+++.|+++|.+.+..+++.|+.+|.+
T Consensus 375 i~~~G~i~~Lv~LL~~~--~~~v~~~A~~aL~nLa~-----~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~n 447 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSA-----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447 (458)
T ss_dssp HHHTTHHHHHHHHSSCS--CHHHHHHHHHHHHHHHS-----SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCC--ChHHHHHHHHHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999986 56799999999999994 467778889999999999999999999999999999999
Q ss_pred HHhcCh
Q 016423 322 LLQLRT 327 (390)
Q Consensus 322 L~~~~~ 327 (390)
|+...+
T Consensus 448 L~~~~p 453 (458)
T 3nmz_A 448 LMANRP 453 (458)
T ss_dssp HHTCCS
T ss_pred HHcCCH
Confidence 998643
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.44 E-value=7.6e-12 Score=132.04 Aligned_cols=209 Identities=13% Similarity=0.140 Sum_probs=158.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHH
Q 016423 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQ 199 (390)
Q Consensus 132 ~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~ 199 (390)
.+...+..+.+. .+.+.+..|...|..+...-++.. .+|.++++.+|..|+++|++++.+++..+..
T Consensus 57 ~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 135 (644)
T 2z6h_A 57 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135 (644)
T ss_dssp HHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHH
Confidence 344555555543 245566666666666655433221 6788999999999999999999998889999
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 279 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~ 279 (390)
+.+.|++|.|+.+|.+.+..++..++.+|++++.+++.....+...||++.|+.+|.+.. ..+++..++.+|.+|+.
T Consensus 136 v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~-- 212 (644)
T 2z6h_A 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-- 212 (644)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT--
T ss_pred HHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc--
Confidence 999999999999999988888888899999999988999999999999999999999763 56678888999988873
Q ss_pred hhcCCCCCchhhhhcCchHH---------------------------------------HHHhhcCCChhHHHHHHHHHH
Q 016423 280 LENMHKVEPPLFRDRFFLKS---------------------------------------VVDLTASADLDLQEKALAAIK 320 (390)
Q Consensus 280 l~~~~~~~~~~l~~~g~v~~---------------------------------------Lv~lL~~~d~~v~EkAL~aL~ 320 (390)
++..+..+++.|+++. |+.+|.+.+.++++.|+.+|.
T Consensus 213 ----~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 213 ----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp ----CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444555555555544 455555667778888888888
Q ss_pred HHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 321 NLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 321 ~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
+|....+..++.+...+++..++..|..
T Consensus 289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 289 NLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 8877655566666656666777777654
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=123.08 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=120.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
++|.++++++|..|+|+|.+++..|+..+..+.+.|++|+|+++|. +.+.+++..|..||-+|.. ++.....+.. +|
T Consensus 59 ~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~ 136 (233)
T 3tt9_A 59 QLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EA 136 (233)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-cc
Confidence 5788999999999999999999999999999999999999999998 4567788877766666643 3455556554 68
Q ss_pred HHHHHHHhc-----C---------CChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhc-CchHHHHHhhcC------
Q 016423 248 DLMLQDILG-----N---------SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ 306 (390)
Q Consensus 248 l~~L~~lL~-----s---------~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~~------ 306 (390)
++.|+.++. . ...+..++.+|+.+|.+|+. .+++.+..+.+. |.++.|+.+++.
T Consensus 137 i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss-----~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~ 211 (233)
T 3tt9_A 137 LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS-----AGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211 (233)
T ss_dssp HHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT-----SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc-----CCHHHHHHHHHCCCcHHHHHHHHHhhhhccc
Confidence 999988663 0 01266899999999999985 456778888765 899999999965
Q ss_pred CChhHHHHHHHHHHHHHh
Q 016423 307 ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 307 ~d~~v~EkAL~aL~~L~~ 324 (390)
.+...+|.++.+|.+|.-
T Consensus 212 ~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 212 PDDKATENCVCILHNLSY 229 (233)
T ss_dssp TTCHHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHHHHHh
Confidence 266899999999999864
No 32
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.42 E-value=4e-13 Score=136.12 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=145.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|+++++.+|..|+.+|++++.+++ .+..++.. |+++.|+++|.+. +..++..|+.+|.++.++ +.+...+.+.|
T Consensus 24 ~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g 101 (529)
T 1jdh_A 24 KLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSG 101 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcC
Confidence 46778999999999999999988765 55566654 8999999999754 678999999999999887 44788888999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
|++.|+.+|+++ +..++..|++.|.+|+. .++..+..+.+.|.++.|+.+|.+++..++..++.+|.+|+...
T Consensus 102 ~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 102 GIPALVKMLGSP--VDSVLFYAITTLHNLLL-----HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHHHHTTCS--CHHHHHHHHHHHHHHHH-----HCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHhc-----CCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 999999999987 57799999999999995 24556777889999999999999999999999999999999866
Q ss_pred hhHHHHHHhhCCcHHHHHHHHH
Q 016423 327 TTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 327 ~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
++.+..+...+++..++..|++
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~ 196 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRT 196 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHh
Confidence 6777777766677777777764
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.37 E-value=3e-11 Score=131.04 Aligned_cols=208 Identities=14% Similarity=0.138 Sum_probs=156.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHH
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQV 200 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~ 200 (390)
+...++.|.+. .+.+-+..|+..|..+...-++.. .+|.++++.+|..|+|+|++++.+++..+..+
T Consensus 194 i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 33344444433 256677777777777655544322 68899999999999999999999999999999
Q ss_pred HhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhh
Q 016423 201 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 280 (390)
Q Consensus 201 le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l 280 (390)
.+.|++|.|+.++.+++..++..|+.+|.+++.+++.+...+...||++.|+.+|.+.. ....+..++.+|.+|+.
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~--- 348 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV--- 348 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHT---
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhc---
Confidence 99999999999999988889999999999999999999999999999999999998653 33444455566655552
Q ss_pred hcCCCCCchhhh---------------------------------------hcCchHHHHHhhcCCChhHHHHHHHHHHH
Q 016423 281 ENMHKVEPPLFR---------------------------------------DRFFLKSVVDLTASADLDLQEKALAAIKN 321 (390)
Q Consensus 281 ~~~~~~~~~~l~---------------------------------------~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~ 321 (390)
.+..+..+. ..++++.|+.+|.+.+..+++.|+.+|.+
T Consensus 349 ---~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 ---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp ---STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 111122222 23567777777888888999999999999
Q ss_pred HHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 322 LLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 322 L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
|....+..+..+...+++..++..|..
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 988766666666656677888887765
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.34 E-value=8.2e-12 Score=135.50 Aligned_cols=196 Identities=18% Similarity=0.188 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHHhhcccccc----c------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC
Q 016423 146 SLEDSQRALQELLILVEPIDNA----N------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnA----n------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s 215 (390)
+.+-+..++..|..++...... . .+|.++++.+|..|+|+|++++.+++..+..+.+.|+++.|+.+|.+
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 3445555566666655433211 1 57889999999999999999999999999999999999999999976
Q ss_pred C--CHHHHHHHHHHHHHHhhCCccc---hHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchh
Q 016423 216 S--FVEEAVKALYTVSSLIRNNLAG---QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 290 (390)
Q Consensus 216 ~--~~~vr~kAL~ALSsLiR~~~~a---~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~ 290 (390)
. ...++..|+++|++|+.+++.. +..+...||++.|+.+|.+++ ...++..|+++|++|+. ++..+..
T Consensus 453 ~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~-~~~v~~~A~~aL~nLa~------~~~~~~~ 525 (780)
T 2z6g_A 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLAL------CPANHAP 525 (780)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHHS------SHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC-hHHHHHHHHHHHHHHhc------CHHHHHH
Confidence 3 3489999999999999877663 567889999999999999763 45799999999999984 3444577
Q ss_pred hhhcCchHHHHHhhcCCC----------------------hhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHH
Q 016423 291 FRDRFFLKSVVDLTASAD----------------------LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 291 l~~~g~v~~Lv~lL~~~d----------------------~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 348 (390)
+.+.|+++.|+.+|.+.+ .++++.++.+|.+|+.. +.++..+...+++.+++..|++
T Consensus 526 i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~ 604 (780)
T 2z6g_A 526 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD-IHNRIVIRGLNTIPLFVQLLYS 604 (780)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTCCHHHHHHGGGC
T ss_pred HHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC-hhhHHHHHHCCcHHHHHHHHcC
Confidence 889999999999996532 45788999999999875 4677777767777777777654
Q ss_pred H
Q 016423 349 Q 349 (390)
Q Consensus 349 ~ 349 (390)
.
T Consensus 605 ~ 605 (780)
T 2z6g_A 605 P 605 (780)
T ss_dssp S
T ss_pred C
Confidence 3
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.32 E-value=8.2e-12 Score=131.77 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=144.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|+++++.+|..|+.+|+.++.+++ .+..++.. |+++.|+++|.+. +..++..|+.+|.++.++. .+...+.+.|
T Consensus 21 ~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g 98 (644)
T 2z6h_A 21 KLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 98 (644)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcC
Confidence 56788999999999999999999876 55555554 8899999999865 6789999999999998874 4788888999
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
|++.|+.+|+++ +..++..|+++|.+|+. .++..+..+.+.|+++.|+.+|.+++..++..++.+|.+|+...
T Consensus 99 ~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~-----~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 99 GIPALVKMLGSP--VDSVLFYAITTLHNLLL-----HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHHHHHTTCS--SHHHHHHHHHHHHHHHH-----HSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHh-----CcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 999999999987 67799999999999996 24556677889999999999999999999999999999999765
Q ss_pred hhHHHHHHhhCCcHHHHHHHH
Q 016423 327 TTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 327 ~~~r~~~~~~~gL~~~L~~Lr 347 (390)
+..+..+...+++..++..|+
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~ 192 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMR 192 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHT
T ss_pred cHHHHHHHHcCChHHHHHHHH
Confidence 667777775666777777665
No 36
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.30 E-value=3e-11 Score=127.43 Aligned_cols=150 Identities=11% Similarity=0.092 Sum_probs=124.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|.++++.+|..|+|+|++++.+ |+..+..+.+.|+||+|+.+|.+ .+.+++..|.+||-+|.. ++.....+. .+
T Consensus 97 ~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~-~~ 174 (584)
T 3l6x_A 97 GLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIV-DH 174 (584)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHH-HH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHH-hc
Confidence 578899999999999999999986 89999999999999999999997 466788888888888876 566677776 47
Q ss_pred cHHHHHHHhc----------------CCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh-cCchHHHHHhhcC---
Q 016423 247 GDLMLQDILG----------------NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTAS--- 306 (390)
Q Consensus 247 Gl~~L~~lL~----------------s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~--- 306 (390)
|++.|+.++. .+..+..++.+|+++|.+|+. .+++.+..+++ .|+++.|+.+|.+
T Consensus 175 alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~-----~~~~~R~~i~~~~Gli~~LV~~L~~~~~ 249 (584)
T 3l6x_A 175 ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSS-----ERSEARRKLRECDGLVDALIFIVQAEIG 249 (584)
T ss_dssp THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTS-----SCHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhc-----CCHHHHHHHHHcCCcHHHHHHHHHHhhc
Confidence 8999999872 011257899999999999994 34455777766 5888999999974
Q ss_pred ---CChhHHHHHHHHHHHHHhc
Q 016423 307 ---ADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 307 ---~d~~v~EkAL~aL~~L~~~ 325 (390)
.+...+|.|+.+|.+|...
T Consensus 250 ~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 250 QKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp TTCCSCHHHHHHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHHHHHhhcc
Confidence 4678999999999998864
No 37
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.18 E-value=4.6e-10 Score=118.66 Aligned_cols=174 Identities=17% Similarity=0.117 Sum_probs=142.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChH-HHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 246 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~-~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g 246 (390)
.+|.+++-.+|..|..+|..++.|+|. +|+.++.. ++++.|+.+|+++.+.+|-.|+..|+.|+++|+..|+.+.-.|
T Consensus 129 ~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEn 208 (651)
T 3grl_A 129 SLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFEN 208 (651)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 788999999999999999999999999 99999976 9999999999998888999999999999999999999998899
Q ss_pred cHHHHHHHhcCCC--hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChh------HHHH---H
Q 016423 247 GDLMLQDILGNSS--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD------LQEK---A 315 (390)
Q Consensus 247 Gl~~L~~lL~s~~--~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~------v~Ek---A 315 (390)
|++.|..++.... ..-.+...++.+|.+|+. .++..+..|.+.|+++.|..+|..++.. .... +
T Consensus 209 aFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr-----~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~ 283 (651)
T 3grl_A 209 AFERLLDIITEEGNSDGGIVVEDCLILLQNLLK-----NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLM 283 (651)
T ss_dssp HHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh-----cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHH
Confidence 9999999998542 123578899999999995 5677788999999999999999765321 2233 6
Q ss_pred HHHHHHHHhcC------hhHHHHHHhhCCcHHHHHHHH
Q 016423 316 LAAIKNLLQLR------TTEALVLKDFCGLDTALERLR 347 (390)
Q Consensus 316 L~aL~~L~~~~------~~~r~~~~~~~gL~~~L~~Lr 347 (390)
+.++..|+.-+ ..++..+.+.+++..++..+.
T Consensus 284 L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 284 LQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 77777776542 235666664444566666544
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.3e-09 Score=115.77 Aligned_cols=152 Identities=11% Similarity=0.153 Sum_probs=121.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHH---HHHHHHHHHHHHhhCCccchHHHH--
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE---EAVKALYTVSSLIRNNLAGQEMFY-- 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~---vr~kAL~ALSsLiR~~~~a~~~f~-- 243 (390)
.+++++++.+|..|+|+|++++.+ +.++..+++.|++++|+.+|.+.+.. ++..|+.||+.++-...|.. .|.
T Consensus 464 ~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~ 541 (778)
T 3opb_A 464 REMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKY 541 (778)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSS
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCC
Confidence 678899999999999999999755 99999999999999999999887543 79999999999986544332 332
Q ss_pred -HcCcHHHHHHHhcC-CCh-----------hHHHHHHHHHHHHHHhhhhhhcCC---CCCchhhhhc-CchHHHHHhhcC
Q 016423 244 -VEAGDLMLQDILGN-SSF-----------EIRLHRKAVSLVGDLAKCQLENMH---KVEPPLFRDR-FFLKSVVDLTAS 306 (390)
Q Consensus 244 -~~gGl~~L~~lL~s-~~~-----------d~klr~KA~~LLs~L~~~~l~~~~---~~~~~~l~~~-g~v~~Lv~lL~~ 306 (390)
..|++++|+.+|.. +.. +..-+..|+.+|++|++. .+ ++.+..++.+ |+++.+.++|.+
T Consensus 542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~----~~n~~E~~r~~Ii~~~ga~~~L~~LL~s 617 (778)
T 3opb_A 542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS----ETSDGEEVCKHIVSTKVYWSTIENLMLD 617 (778)
T ss_dssp CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----CSHHHHHHHHHHHHSHHHHHHHHHGGGC
T ss_pred ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----CcccchHHHHHHHHhcCHHHHHHHHHhC
Confidence 14899999999983 211 112366899999999961 11 2446767775 999999999999
Q ss_pred CChhHHHHHHHHHHHHHhcC
Q 016423 307 ADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 307 ~d~~v~EkAL~aL~~L~~~~ 326 (390)
++..++..|+.+|.+|++..
T Consensus 618 ~n~~VrrAA~elI~NL~~~~ 637 (778)
T 3opb_A 618 ENVPLQRSTLELISNMMSHP 637 (778)
T ss_dssp SSHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999853
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.76 E-value=1.3e-07 Score=100.20 Aligned_cols=141 Identities=14% Similarity=0.157 Sum_probs=118.1
Q ss_pred HHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc-chHHHHHc-CcHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 016423 199 QVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDL 275 (390)
Q Consensus 199 ~~le-~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~-a~~~f~~~-gGl~~L~~lL~s~~~d~klr~KA~~LLs~L 275 (390)
.|++ .+.++.|+.+|++++-.+|..++..|+.|+.+++. .++.+... +|++.|+.+|.++ ...+|-.++.+|.+|
T Consensus 116 ~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~--rE~iRneallLL~~L 193 (651)
T 3grl_A 116 IFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS--REVIRNDGVLLLQAL 193 (651)
T ss_dssp HHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc--hHHHHHHHHHHHHHH
Confidence 4443 37899999999998888999999999999999998 78888855 9999999999987 355899999999999
Q ss_pred hhhhhhcCCCCCchhhhhcCchHHHHHhhcCCCh----hHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHH
Q 016423 276 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL----DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 346 (390)
Q Consensus 276 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~----~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L 346 (390)
+. .+++.++.+.-.|..+.|++++..... .+.+-++.+|.+|+..++..+..|+..+.+.++...|
T Consensus 194 t~-----~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL 263 (651)
T 3grl_A 194 TR-----SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263 (651)
T ss_dssp HT-----TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG
T ss_pred hc-----CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh
Confidence 94 677778888888999999999987543 7899999999999999877788888555555544433
No 40
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.73 E-value=2.7e-08 Score=106.44 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=125.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhC-CccchHHHHHcCc
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAG 247 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~-LL~s~~~~vr~kAL~ALSsLiR~-~~~a~~~f~~~gG 247 (390)
.|+|+++..|..||++|+++++ +|..+..+...|++.+++. +|.+++.+||..|.+||.+|+.+ .+.....++..|+
T Consensus 42 ~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~i 120 (684)
T 4gmo_A 42 DLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDV 120 (684)
T ss_dssp HHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred HcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcCh
Confidence 3588999999999999999997 6889999999999987654 67777889999999999999886 4566777888999
Q ss_pred HHHHHHHhcCCCh------------h-------HHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC-
Q 016423 248 DLMLQDILGNSSF------------E-------IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA- 307 (390)
Q Consensus 248 l~~L~~lL~s~~~------------d-------~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~- 307 (390)
++.|..+|.+... . ..+.-.++.+|.+|+. ...+....+...+.++.++.+|.+.
T Consensus 121 l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e-----~s~~~~~~v~~~~~l~~l~~~L~~~~ 195 (684)
T 4gmo_A 121 LTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLAL-----ARDEIHEAVATKQTILRLLFRLISAD 195 (684)
T ss_dssp HHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHhcccHHHHHHHHHhcC
Confidence 9999998853100 0 1123356778888884 3455566777889999999988543
Q ss_pred --ChhHHHHHHHHHHHHHhcChhHHHHHHh
Q 016423 308 --DLDLQEKALAAIKNLLQLRTTEALVLKD 335 (390)
Q Consensus 308 --d~~v~EkAL~aL~~L~~~~~~~r~~~~~ 335 (390)
..+++..|+.||..|..++....+.+..
T Consensus 196 ~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~ 225 (684)
T 4gmo_A 196 IAPQDIYEEAISCLTTLSEDNLKVGQAITD 225 (684)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 4689999999999999987766666663
No 41
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.73 E-value=6.2e-08 Score=104.68 Aligned_cols=139 Identities=13% Similarity=0.172 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhhCC----hHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccch-HHHHH------cC
Q 016423 179 RKISAWILGKASQNN----PLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYV------EA 246 (390)
Q Consensus 179 R~~Aa~vLgta~QNN----p~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~-~~f~~------~g 246 (390)
+..|+.+|+++++.+ ...+..++.. |++|.|..++.+++..++..|+++|++|+. ++.+. ..|.. .+
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhc
Confidence 778999999999986 4578888885 999999999999989999999999999996 46553 34532 23
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhc-CchHHHHHhhcC--CChhHHHHHHHHHHHHH
Q 016423 247 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS--ADLDLQEKALAAIKNLL 323 (390)
Q Consensus 247 Gl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~~--~d~~v~EkAL~aL~~L~ 323 (390)
++.+|+.++.++ +.++|+.|+++|.++++ .++.....+.+. +.++.++.++.. ++.+++..++-+|.+|+
T Consensus 655 rL~lLV~Ll~s~--D~~~r~AAagALAnLts-----~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 655 NFNILVKLLQLS--DVESQRAVAAIFANIAT-----TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHGGGCS--CHHHHHHHHHHHHHHHH-----HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCC--CHHHHHHHHHHHHHhcC-----CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 588999999876 78899999999999974 355566666666 899999999988 89999999999999999
Q ss_pred hc
Q 016423 324 QL 325 (390)
Q Consensus 324 ~~ 325 (390)
..
T Consensus 728 ~~ 729 (778)
T 3opb_A 728 EV 729 (778)
T ss_dssp TT
T ss_pred Hh
Confidence 74
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.54 E-value=4.7e-06 Score=73.91 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=95.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.++++.+|..|+++||.+.. ..+++.|+.+|.+++..+|..|+++|+.+-. ...+
T Consensus 52 ~~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~ 109 (201)
T 3ltj_A 52 KALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAV 109 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGH
T ss_pred HHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHH
Confidence 46788899999999999998842 2478999999999888999999999998621 2467
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
+.|..+|.++ +..+|..|++.|..+- ....++.|..++.+++..++..|+.+|..+-
T Consensus 110 ~~L~~~l~d~--~~~vr~~a~~aL~~~~----------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 110 EPLIKALKDE--DWFVRIAAAFALGEIG----------------DERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHT----------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHhC----------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 8889999876 6778999999998874 1367889999999999999999999998873
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.53 E-value=3.1e-06 Score=75.67 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc----ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCc
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 205 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn----~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~ 205 (390)
.+.+...++.+.+ .+...+..|+..|..+-+ +.+- .+|.++++.+|..|+++||.+.. .++
T Consensus 18 ~~~~~~L~~~L~~--~~~~vR~~A~~~L~~~~~--~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~ 82 (211)
T 3ltm_A 18 PEKVEMYIKNLQD--DSYYVRRAAAYALGKIGD--ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERA 82 (211)
T ss_dssp GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGG
T ss_pred HhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCC--ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHH
Confidence 3444555555553 345666666666665443 1222 67788899999999999999842 247
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 206 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 206 l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
++.|+.+|.+++..+|..|+++|+.+-. ...++.|..+|.++ +..+|..|+..|..+- +
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~-------~- 141 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG-------D- 141 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-------C-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC-------C-
Confidence 8999999998888899999999998731 24678888988876 6778999999998874 1
Q ss_pred CCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 286 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
...++.|..++.+++..++..|+.+|..+-
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 357888999998889999999999888874
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.32 E-value=6.6e-06 Score=72.97 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=97.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|+++++.+|..|+++|+.+.. .+.++.|+.+|.+++..+|..|+++|+.+- . ...+
T Consensus 21 ~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--~---------~~~~ 78 (201)
T 3ltj_A 21 KNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--D---------ERAV 78 (201)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGH
T ss_pred HHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--C---------HHHH
Confidence 46789999999999999998742 257999999999888889999999998863 1 2567
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|..+|.++ +..+|..|++.|..+- + ...++.|+.+|.+++..++..|+.+|..+..
T Consensus 79 ~~L~~~l~d~--~~~vr~~a~~aL~~~~-------~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 79 EPLIKALKDE--DGWVRQSAAVALGQIG-------D---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHC-------C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHhC-------c---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 8889999876 6779999999998874 1 3578889999999999999999999998754
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.30 E-value=8.2e-06 Score=72.88 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=97.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|.++++.+|..|+++|+.+.. .++++.|+.++.+++..+|..|+++|+.+-. .+.+
T Consensus 26 ~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~ 83 (211)
T 3ltm_A 26 KNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAV 83 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHH
Confidence 35788999999999999998743 2579999999999888999999999998731 3567
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|..+|.++ +..+|..|+..|..+. ....++.|+.+|.+++..++..|+.+|..+..
T Consensus 84 ~~L~~~l~~~--~~~vr~~a~~aL~~~~----------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 84 EPLIKALKDE--DGWVRQSAAVALGQIG----------------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHC----------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHhC----------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 8899999876 6779999999998874 13578899999999999999999999998853
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.29 E-value=1.6e-05 Score=73.04 Aligned_cols=166 Identities=10% Similarity=0.110 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHHHHhhccc---cccc---------ccCC-CCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHH
Q 016423 144 TLSLEDSQRALQELLILVEPI---DNAN---------GQLN-HPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKL 209 (390)
Q Consensus 144 ~~s~e~~~~aLd~Le~lve~I---DnAn---------~lL~-s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~L 209 (390)
+.+-.+|..|+..|..+++.- ...+ ..|. .++..||..|+.++|.++.. .+.....+- ..+|.|
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~--~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS--ACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHH
Confidence 345677777888877777651 1111 4563 78999999999999999864 222222222 379999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC-Cc
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EP 288 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~-~~ 288 (390)
+..+.+.+..+|..|..||.+++...+ ... -++.|...|.++ +.++|..++.+|..++.. ..++ ..
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~----~~~~~~~ 170 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNK--NPSVKSETALFIARALTR----TQPTALN 170 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT----CCGGGCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----cCCCCcc
Confidence 999999888999999999999988653 222 246677778876 578999999999998741 2222 22
Q ss_pred hhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 289 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 289 ~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.... ..+++.++.+|...+..+|..|..++..|...
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2222 37899999999999999999999999999864
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.25 E-value=1.7e-05 Score=73.91 Aligned_cols=160 Identities=11% Similarity=0.044 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc---ccccc-----ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP---IDNAN-----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 201 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~---IDnAn-----~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~l 201 (390)
.+.+...++.+.++ +..-+..|...|-.+-.. ++..- .+++++++.||..|+++||.+...+|....
T Consensus 53 ~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~--- 127 (280)
T 1oyz_A 53 QDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP--- 127 (280)
T ss_dssp HHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH---
T ss_pred chHHHHHHHHHcCC--CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH---
Confidence 34555555656543 345566666666554321 11100 134678888999999999998766554332
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhh
Q 016423 202 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 281 (390)
Q Consensus 202 e~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~ 281 (390)
.+++.|+.++++++..+|..|+++|+.+.. ...++.|..++.++ +..+|..|++.|..+..
T Consensus 128 --~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~---- 188 (280)
T 1oyz_A 128 --KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDP--NGDVRNWAAFAININKY---- 188 (280)
T ss_dssp --HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCS--SHHHHHHHHHHHHHHTC----
T ss_pred --HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHhhcc----
Confidence 357888888888888888888888887532 24678888888876 56688888888877631
Q ss_pred cCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 282 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 282 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
. ...+++.++.+|..++..++..|+.+|+.+.
T Consensus 189 -~---------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 189 -D---------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -C---------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -C---------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 1 1245667777777777777777777777654
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.25 E-value=3e-05 Score=72.23 Aligned_cols=126 Identities=13% Similarity=0.036 Sum_probs=94.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~-LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+|.++++.+|..|+++||.+......... .++.|.. ++++++..+|..|+++|+.+..+++.... ..
T Consensus 61 ~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~ 129 (280)
T 1oyz_A 61 EFCSDKNYIRRDIGAFILGQIKICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KI 129 (280)
T ss_dssp HHHTCSSHHHHHHHHHHHHHSCCCTTTHHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccchH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HH
Confidence 467888999999999999998543221111 2344442 45666788999999999999866554322 34
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
++.|..+|.++ +..+|..|++.|..+. + .+.++.|+.+|.+++..++..|+.+|..+.
T Consensus 130 ~~~L~~~l~d~--~~~vR~~a~~aL~~~~-------~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 130 VEQSQITAFDK--STNVRRATAFAISVIN-------D---------KATIPLLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHTC-------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCC--CHHHHHHHHHHHHhcC-------C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 67888889876 6778999999988765 1 247899999999999999999999998885
No 49
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=98.20 E-value=5.4e-06 Score=80.30 Aligned_cols=126 Identities=16% Similarity=0.200 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhhccccccc-------------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHH
Q 016423 147 LEDSQRALQELLILVEPIDNAN-------------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMK 211 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~IDnAn-------------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~ 211 (390)
.+....|||.|+++-|+|...- -+..+.++.+|..|+.+||.+.+|||.+-+.+.+. ..+..++.
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 3456778899999998887653 23456778899999999999999999999988875 34444443
Q ss_pred hhcC-------CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 212 MVKS-------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 212 LL~s-------~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
-|.. ....+...-+++|..|+.+. ..| ...|+..|..++...+.+..+|+|++-+|.++..
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 3322 23455667799999999885 334 3678888888886433367789999999999984
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.17 E-value=8.1e-06 Score=88.31 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=109.5
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|++++..+|..|+++||.++...+..-...+ .+++|.|+.++++++..||..|+|+|+.++.+.++....-+-.+-+
T Consensus 366 ~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll 444 (852)
T 4fdd_A 366 ELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 567889999999999999999988764322222 3578999999998888999999999999987643321111223556
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|...|.++ +.++|..|++.|.+++... .+...+.+ .++++.++.+++..+......++.++..++.
T Consensus 445 ~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~----~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 445 TELLKRILDS--NKRVQEAACSAFATLEEEA----CTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HHHHHHHTCS--SHHHHHHHHHHHHHHHHHH----GGGGGGGH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHHHh----hHhhHhHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 7888888775 6789999999999999632 23333332 5778888888887777777778888888874
No 51
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.5e-05 Score=73.25 Aligned_cols=172 Identities=9% Similarity=0.050 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHHHHH-hhcc---cc--ccc---------ccC-CCCChHHHHHHHHHHHHHhhC-C-hHHH-HHHHhcC
Q 016423 144 TLSLEDSQRALQELLI-LVEP---ID--NAN---------GQL-NHPDTDIRKISAWILGKASQN-N-PLVQ-KQVLELG 204 (390)
Q Consensus 144 ~~s~e~~~~aLd~Le~-lve~---ID--nAn---------~lL-~s~~~~vR~~Aa~vLgta~QN-N-p~~Q-~~~le~g 204 (390)
+..-.+|..|++.|.. +++. |. .++ +.| +..+..+|..|+.+||.++.. . +..+ .....
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~-- 104 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL-- 104 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--
Confidence 3567788888888888 7753 32 222 455 578899999999999999854 2 3343 33332
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCC
Q 016423 205 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 284 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~ 284 (390)
.+|.++..+.+....|+..+.+|+-+++.+.++.....+-..-++.|...|+++ +..+|.-++.+|..++.. .
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~-----~ 177 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE-----E 177 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH-----C
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH-----c
Confidence 699999999988889999999999999987643211100012356777888876 568999999999999852 2
Q ss_pred CCCchh---hhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 285 KVEPPL---FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 285 ~~~~~~---l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+..... .....+++.+..++..++..+|+.|..++..+..
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 221122 2236899999999999999999999999999875
No 52
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.09 E-value=1.2e-05 Score=86.06 Aligned_cols=180 Identities=15% Similarity=0.083 Sum_probs=130.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------------ccCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHH
Q 016423 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------------GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVL 201 (390)
Q Consensus 136 ~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------------~lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~l 201 (390)
.++.|++ .+.++|..|+-.|..++++-.+-. .+|..++.+||..|+++|++++.. ++.+...++
T Consensus 39 ll~~L~S--~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 39 VLKDLKS--PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHSS--SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHcCC--CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 4555654 456788889999998887522211 678889999999999999999987 689999999
Q ss_pred hcCcHHHHHHhhcCCC--------------H-------HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcC-CC
Q 016423 202 ELGALSKLMKMVKSSF--------------V-------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS 259 (390)
Q Consensus 202 e~g~l~~Ll~LL~s~~--------------~-------~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s-~~ 259 (390)
..|++++|+.++.+.. . .+...++++|.+|+-+...+...+...++++.|+..|.+ +.
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~ 196 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI 196 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 9999999999985321 1 123467889999998888888899889999999998853 32
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchH---HHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 260 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK---SVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 260 ~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~---~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
....++..|+.+|+.|+. .++.....+.+.+... .+..+.++.+ ..+.-+...|.++.
T Consensus 197 ~~~~v~~~a~~~L~~ls~-----dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 197 APQDIYEEAISCLTTLSE-----DNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-----cCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 356789999999999984 4555666666665432 3333333333 34445556666654
No 53
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.00 E-value=6.3e-07 Score=75.26 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=89.4
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|+++++.+|..|+++|+.+.. ..++.|+.+|++++..+|..|+++|+.+-. ...+
T Consensus 19 ~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~ 75 (131)
T 1te4_A 19 SHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAV 75 (131)
T ss_dssp --CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHH
Confidence 46788999999999999987632 136999999998888999999999998731 1247
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 321 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~ 321 (390)
+.|..+|.++ +..+|..|++.|..+- ....++.|..+|..+|..++..|..+|..
T Consensus 76 ~~L~~~L~d~--~~~VR~~A~~aL~~~~----------------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 76 EPLIKLLEDD--SGFVRSGAARSLEQIG----------------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHC--CTHHHHHHHHHHHHHC----------------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHhC----------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8888888765 6678999999998874 13567889999998899999999888754
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.99 E-value=0.00011 Score=76.66 Aligned_cols=152 Identities=17% Similarity=0.133 Sum_probs=103.8
Q ss_pred HhHHHHHHHHHHc-CCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc-ccccc-------ccCCCCChHHHHHH
Q 016423 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNAN-------GQLNHPDTDIRKIS 182 (390)
Q Consensus 112 ~r~~~L~eal~~~-~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~-IDnAn-------~lL~s~~~~vR~~A 182 (390)
+|++-+++++..+ .|.+-....-..++.+.+ ...+.|..+.--+..+.+. -|.+- +-|+++++.+|..|
T Consensus 29 ~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s--~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~A 106 (591)
T 2vgl_B 29 KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQT--DNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALA 106 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSS--SCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3666666666544 233323344445554433 3455554443333333331 22221 56889999999999
Q ss_pred HHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhH
Q 016423 183 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 262 (390)
Q Consensus 183 a~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~ 262 (390)
..+||++. +|..-.. .+|.+.+++.+.++.||.+|++|+..+.+.+|.... ..+.++.|..+|.++ ++
T Consensus 107 L~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~--d~ 174 (591)
T 2vgl_B 107 VRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADS--NP 174 (591)
T ss_dssp HHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCS--CH
T ss_pred HHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCC--Ch
Confidence 99999985 4443333 468899999988899999999999999998876543 245578999999876 67
Q ss_pred HHHHHHHHHHHHHhh
Q 016423 263 RLHRKAVSLVGDLAK 277 (390)
Q Consensus 263 klr~KA~~LLs~L~~ 277 (390)
.++..|+.+|..++.
T Consensus 175 ~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 175 MVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHh
Confidence 799999999999984
No 55
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.98 E-value=9.2e-05 Score=75.09 Aligned_cols=138 Identities=12% Similarity=0.037 Sum_probs=75.0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+|..++..||..|+.+++.++..... .+.-...+|.|+.++.+++..+|..++++++.++....+ .++...-+
T Consensus 448 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~ 521 (588)
T 1b3u_A 448 AWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ---DITTKHML 521 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 345556666666666666666554221 111223566666666555556666666666666654322 12223455
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
+.|...+.++ +..+|..++..+..++.. .+ ..+....+++.+..++...|.++++.|..++..|
T Consensus 522 ~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~----~~----~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 522 PTVLRMAGDP--VANVRFNVAKSLQKIGPI----LD----NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SC----HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHhhCCCC--CchHHHHHHHHHHHHHHH----hc----hhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 6666666654 345666666666666631 11 1122334555555555555666666666666554
No 56
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.89 E-value=0.0007 Score=63.56 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=123.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHh
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 212 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~L 212 (390)
||++++.+... +++. ..|.+ +|+..++.++.+|..+|+.+...-|+.-....=...+|.++.+
T Consensus 21 iK~a~ela~~~----e~~l---~~L~~----------LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~l 83 (265)
T 3b2a_A 21 ILDAVSLALED----KRAL---FLILE----------LAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINA 83 (265)
T ss_dssp HHHHHHHHHHC----HHHH---HHHHH----------HTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc----hhHH---HHHHH----------HHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 77777766654 3344 34433 3567889999999999999988865555544444579999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCccchHHHHHc---------------------------------CcHHHHHHHhcCCC
Q 016423 213 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE---------------------------------AGDLMLQDILGNSS 259 (390)
Q Consensus 213 L~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~---------------------------------gGl~~L~~lL~s~~ 259 (390)
+.+++..+..+|+-+|.-++-+.|...+.|... +-+..|..++.++
T Consensus 84 lk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Sk- 162 (265)
T 3b2a_A 84 LSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSP- 162 (265)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCS-
T ss_pred HhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCC-
Confidence 999998899999999999999988765544321 1235566777555
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 260 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 260 ~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+.++|.-+..++.++... ..++... .+++.-+..+|++.|+.++|+|+.++..+++.
T Consensus 163 -d~~vK~agl~~L~eia~~---S~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 163 -DLYTKVAGFCLFLNMLNS---SADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp -SHHHHHHHHHHHHHHGGG---CSSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred -ChhHHHHHHHHHHHhhcc---cCCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 788888888889988852 2333333 35666788999999999999999999999975
No 57
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.85 E-value=0.00014 Score=73.73 Aligned_cols=125 Identities=11% Similarity=0.016 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHhhccccccc----------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc
Q 016423 145 LSLEDSQRALQELLILVEPIDNAN----------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 214 (390)
Q Consensus 145 ~s~e~~~~aLd~Le~lve~IDnAn----------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~ 214 (390)
.+.+-|..+.+.|..+++.+.... .+++++++.+|..|+.+++.++...+.- ......+|.+..+++
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~ 252 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAE 252 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHcc
Confidence 356667777888777776554321 4567888899999999999998775432 222347888888888
Q ss_pred CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 215 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 215 s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+++..+|..|+.+|+.++...++. .....-++.+..++.++ +..+|..|+..+..++.
T Consensus 253 d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 253 DKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCE 310 (588)
T ss_dssp CSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHH
Confidence 877889999999999988764331 22345578888888876 56789999999998875
No 58
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.84 E-value=0.00039 Score=72.57 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=108.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+++.+++..+|..+.-.+...+..+|.... -+++.|.+-+.++++.+|.-|+.+|+++. .+.....+ +
T Consensus 56 ~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~ 123 (591)
T 2vgl_B 56 NCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYL-----C 123 (591)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----H
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----H
Confidence 578899999999999999999887775532 24678888899888889999999999984 33333332 4
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
+.+..+|.++ ++.+|.+|+..+..+.. .+++ .+.+.++++.+..+|..+|+.++..|+.+|..+....
T Consensus 124 ~~l~~~L~d~--~~~VRk~A~~al~~i~~-----~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 124 EPLRKCLKDE--DPYVRKTAAVCVAKLHD-----INAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHSSCS--CHHHHHHHHHHHHHHHH-----SSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCC--ChHHHHHHHHHHHHHHh-----hChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 6788888876 78899999999999984 3444 3344689999999999999999999999999998754
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.79 E-value=0.00037 Score=74.20 Aligned_cols=172 Identities=8% Similarity=0.090 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhhccccccc---------ccCCCCChHHHHHHHHHHHHHhhCCh-HHHHHHHhcCcHHHHHHhhcCCC
Q 016423 148 EDSQRALQELLILVEPIDNAN---------GQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSSF 217 (390)
Q Consensus 148 e~~~~aLd~Le~lve~IDnAn---------~lL~s~~~~vR~~Aa~vLgta~QNNp-~~Q~~~le~g~l~~Ll~LL~s~~ 217 (390)
.-+..+.+.|..+.......- ..|.+++..+|..|++++|.++.... ..-...+. ..+|.|+..+.+++
T Consensus 346 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~ 424 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS 424 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC
T ss_pred cHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc
Confidence 345556666666555443211 56778889999999999999997642 32222232 47899999999888
Q ss_pred HHHHHHHHHHHHHHhhCCccch--HHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC-CCCCchhhhhc
Q 016423 218 VEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLFRDR 294 (390)
Q Consensus 218 ~~vr~kAL~ALSsLiR~~~~a~--~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~-~~~~~~~l~~~ 294 (390)
..+|..++|+++.++...++.. ..+ -..-++.|...+.++ .+++..|++.+.+++.... +. .+...+.+ .
T Consensus 425 ~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~-~~~~~~l~~~~--~ 497 (861)
T 2bpt_A 425 LQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLA-EATPSPIYNFY--P 497 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHS-SSSSCGGGGGH--H
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcc-cccchhhHHHH--H
Confidence 8999999999999987644321 111 123467788888763 6789999999999985310 00 11222222 3
Q ss_pred CchHHHHHhhcCCC--hhHHHHHHHHHHHHHhcCh
Q 016423 295 FFLKSVVDLTASAD--LDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 295 g~v~~Lv~lL~~~d--~~v~EkAL~aL~~L~~~~~ 327 (390)
.+++.++.++.+.| ..++..++.+|..++...+
T Consensus 498 ~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 56788888888644 7899999999999987543
No 60
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.77 E-value=0.00046 Score=74.50 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 173 HPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
.++.+++..++++||.+++. .+..+..+...+.++.++..+.+++..+|..|.++++.+++.++.....+... -++.|
T Consensus 597 ~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~-~lp~l 675 (852)
T 4fdd_A 597 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPIL 675 (852)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHH-HHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHH
Confidence 45678999999999999886 34555555567899999999988888999999999999999887665554433 56788
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhcC
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~~ 326 (390)
...|..+ +..++..|+|++..++... +++..+.+ ..+++.|+.+|.++ +..+++.+..+|+.|....
T Consensus 676 ~~~l~~~--~~~v~~~a~~alg~i~~~~----~~~~~p~~--~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~ 744 (852)
T 4fdd_A 676 GTNLNPE--FISVCNNATWAIGEISIQM----GIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC 744 (852)
T ss_dssp HHTCCTT--SHHHHHHHHHHHHHHHHHH----GGGGGGGT--HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCcc--chHHHHHHHHHHHHHHHHh----hHhHHHHH--HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhC
Confidence 8888654 5678999999999998632 23344443 58899999999876 4589999999999999753
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.71 E-value=9.1e-05 Score=72.76 Aligned_cols=187 Identities=10% Similarity=0.018 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc---------------ccccc---------ccCCCCChHHHHHHHH
Q 016423 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP---------------IDNAN---------GQLNHPDTDIRKISAW 184 (390)
Q Consensus 129 d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~---------------IDnAn---------~lL~s~~~~vR~~Aa~ 184 (390)
.+..+...+.++.+.+.+..-|..|.--|..++.. ++... ..|.++++.+ ..++.
T Consensus 33 ~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~ 111 (462)
T 1ibr_B 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQ 111 (462)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHH
T ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHH
Confidence 35566777788887666777777776666655532 22211 4567777888 89999
Q ss_pred HHHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhCC-ccchHHHHHcCcHHHHHHHhcCCCh
Q 016423 185 ILGKASQNN-PLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSF 260 (390)
Q Consensus 185 vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSsLiR~~-~~a~~~f~~~gGl~~L~~lL~s~~~ 260 (390)
+|+.++... |. .. -.+.+|.|+..+.++ +..++..|+.+++.+++.. +.....+. ..-++.+..+|.++..
T Consensus 112 ~i~~ia~~~~~~-~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 112 CVAGIACAEIPV-NQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHHHHHHHHGGG-TC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhccc-cc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC
Confidence 999997653 21 01 136899999999887 7788999999999999875 32222222 2356788888887522
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 261 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 261 d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+..+|..|+..+.+++... +.... ......-+++.+...+.+++.+++..++.+|..++..
T Consensus 187 ~~~vr~~a~~~l~~~~~~~-~~~~~---~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFT-KANFD---KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTT-HHHHT---SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HHhhh---hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 5678999999999876310 00000 0011122466777777888999999999999999864
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.68 E-value=0.00039 Score=74.13 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=107.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCCh-HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccch--HHHHHc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVE 245 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp-~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~--~~f~~~ 245 (390)
..|.+++..+|..|++++|.++...+ ..-..++ ...+|.|+..+++++..+|..|+++|+.++...++.. ..+ -.
T Consensus 373 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~ 450 (876)
T 1qgr_A 373 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LA 450 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HH
T ss_pred HHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HH
Confidence 56778899999999999999998754 3222222 3479999999998888999999999999999876531 111 13
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc----------CCCCCchhhhhcCchHHHHHhhcCC---ChhHH
Q 016423 246 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN----------MHKVEPPLFRDRFFLKSVVDLTASA---DLDLQ 312 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~----------~~~~~~~~l~~~g~v~~Lv~lL~~~---d~~v~ 312 (390)
.-++.|...|.++ .+++..++++|.+++....+. ......+.+ ..+++.+..++... +..++
T Consensus 451 ~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 451 PLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp HHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHH
Confidence 4567777777763 678999999999999632100 001123333 35788888888764 35788
Q ss_pred HHHHHHHHHHHhcC
Q 016423 313 EKALAAIKNLLQLR 326 (390)
Q Consensus 313 EkAL~aL~~L~~~~ 326 (390)
..++.++..|+...
T Consensus 526 ~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 526 SSAYESLMEIVKNS 539 (876)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999888653
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.60 E-value=0.001 Score=74.72 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=108.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc-----hHHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a-----~~~f~ 243 (390)
+.|.++++.+|..|+.+|+.++...+.- .+ ...++.|+..+.+++..+|..|..+|+.++...++. .....
T Consensus 55 ~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~ 130 (1230)
T 1u6g_C 55 KLLEDKNGEVQNLAVKCLGPLVSKVKEY---QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV 130 (1230)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTSCHH---HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCCHH---HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH
Confidence 3567889999999999999999876541 11 136788888888877788999999999999876653 11222
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
-..-++.|...+.++ .+.+++..|+..+..++.. ..+...+.+ ..+++.+...|.+++..+++.|+.+|..++
T Consensus 131 ~~~llp~L~~~l~~~-~~~~~~~~al~~l~~~~~~----~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQ-EDVSVQLEALDIMADMLSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp HHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHHHHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHH----hHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 345678888888742 2677899999999999852 222233322 467888888888888999999999999998
Q ss_pred hcC
Q 016423 324 QLR 326 (390)
Q Consensus 324 ~~~ 326 (390)
...
T Consensus 204 ~~~ 206 (1230)
T 1u6g_C 204 MSC 206 (1230)
T ss_dssp TTC
T ss_pred Hhc
Confidence 753
No 64
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.56 E-value=0.00078 Score=70.88 Aligned_cols=163 Identities=11% Similarity=0.030 Sum_probs=121.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhh---ccccccc----ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH
Q 016423 139 DLNNSTLSLEDSQRALQELLILV---EPIDNAN----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 211 (390)
Q Consensus 139 ~l~~~~~s~e~~~~aLd~Le~lv---e~IDnAn----~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~ 211 (390)
.|+++ +...|..++..+.++. ++++.+. +++.+++..+|..+.-.+...+..+|..-.. +++.|.+
T Consensus 42 ~l~~~--~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~k 114 (618)
T 1w63_A 42 SFREE--DNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKN 114 (618)
T ss_dssp HHTTT--CTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHH
T ss_pred HhhCC--CHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHH
Confidence 45554 3456777777766643 2333332 6777899999999999999998888753222 4677888
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhh
Q 016423 212 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 291 (390)
Q Consensus 212 LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l 291 (390)
-|.+.++.+|.-|+.+||++.. +. + ...-++.+..+|.++ ++.+|++|+..+..+.. .+++..
T Consensus 115 DL~~~n~~vr~lAL~~L~~i~~--~~----~-~~~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~-----~~p~~v--- 177 (618)
T 1w63_A 115 DLNHSTQFVQGLALCTLGCMGS--SE----M-CRDLAGEVEKLLKTS--NSYLRKKAALCAVHVIR-----KVPELM--- 177 (618)
T ss_dssp HHSCSSSHHHHHHHHHHHHHCC--HH----H-HHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHH-----HCGGGG---
T ss_pred hcCCCCHhHHHHHHHHHHhcCC--HH----H-HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH-----HChHHH---
Confidence 8888888899999999999852 21 1 134467888888876 67899999999999985 244332
Q ss_pred hhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 292 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 292 ~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
.++++.+..+|...|+.++-.|+.+|..+....+
T Consensus 178 --~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 178 --EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp --GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred --HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 2788889999999999999999999999987543
No 65
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.56 E-value=0.00044 Score=72.78 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=102.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+-|+++++-+|..|+++||.+. ++.. . ...++.+.+++.+.++.||.+|+.|+..+.+.+|.... +-+
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~--~~~~----~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~ 181 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMG--SSEM----C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFL 181 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHC--CHHH----H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGG
T ss_pred HhcCCCCHhHHHHHHHHHHhcC--CHHH----H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHH
Confidence 5678999999999999999996 2432 2 24688999999998899999999999999999887554 345
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC---------------CChhHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQE 313 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~~v~E 313 (390)
+.+..+|.++ ++.++..|+.+|..++. .+++....+ ..+++.++.+|.. .++-.|-
T Consensus 182 ~~l~~lL~D~--d~~V~~~Al~~L~~i~~-----~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 182 PATKNLLNEK--NHGVLHTSVVLLTEMCE-----RSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp GGTTTSTTCC--CHHHHHHHHHHHHHHCC-----SHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred HHHHHHhCCC--CHhHHHHHHHHHHHHHH-----hChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 6777888775 67789999999999984 222221222 2567777776642 4777888
Q ss_pred HHHHHHHHHHhc
Q 016423 314 KALAAIKNLLQL 325 (390)
Q Consensus 314 kAL~aL~~L~~~ 325 (390)
+++++|..+...
T Consensus 253 ~il~~L~~l~~~ 264 (618)
T 1w63_A 253 RILRLLRILGRN 264 (618)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhCCC
Confidence 888888888764
No 66
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.004 Score=58.44 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHHhhcccccc-------c----------ccCCCCChHHHHHHHHHHHHHhhCChH-----HHHHHHhc
Q 016423 146 SLEDSQRALQELLILVEPIDNA-------N----------GQLNHPDTDIRKISAWILGKASQNNPL-----VQKQVLEL 203 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnA-------n----------~lL~s~~~~vR~~Aa~vLgta~QNNp~-----~Q~~~le~ 203 (390)
.=.+|..|+++|..++.....- . +.+...|..+...|+.+|..++..-.. ......-.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 4456777777777766542110 0 455678899999999999998875221 11111222
Q ss_pred CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 204 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 204 g~l~~Ll~-LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
.++|.|+. .+.+....++.+|+.++..++....+.... ++.+...+.+. +++++.-++..|..++.+.
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~------~e~l~~~l~~K--npkv~~~~l~~l~~~l~~f--- 170 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS------VELVIPFFEKK--LPKLIAAAANCVYELMAAF--- 170 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH------HHHHGGGGGCS--CHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHhcc--CHHHHHHHHHHHHHHHHHh---
Confidence 46788885 477777888999999998887654443222 24566667766 6889999999999988642
Q ss_pred CCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 283 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 283 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
+.........-..+++.+..+|.+.|.+||+.|..++..+...
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 1111111111234667788889999999999999999998865
No 67
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.35 E-value=0.00069 Score=66.39 Aligned_cols=147 Identities=7% Similarity=0.032 Sum_probs=100.3
Q ss_pred cCCCC--ChHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCccchH--HH
Q 016423 170 QLNHP--DTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQE--MF 242 (390)
Q Consensus 170 lL~s~--~~~vR~~Aa~vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~--~~~vr~kAL~ALSsLiR~~~~a~~--~f 242 (390)
.+.++ ++.+|..|+.+++.++... +..-..... ..++.++.++.++ +..+|..|+.++++++........ .+
T Consensus 136 ~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 214 (462)
T 1ibr_B 136 NVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214 (462)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45566 8899999999999998864 332121222 3688899999887 678999999999997644322111 11
Q ss_pred HHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHH
Q 016423 243 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 322 (390)
Q Consensus 243 ~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L 322 (390)
.. --++.|...+.++ +..+|..++.+|..++.. ..+.+.+.+ ..++++.++..+...+.+++..++.++..+
T Consensus 215 ~~-~l~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~----~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 215 RH-FIMQVVCEATQCP--DTRVRVAALQNLVKIMSL----YYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HH-HHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH----CGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 10 0245555556554 677899999999999852 111122222 227778888888888999999999999888
Q ss_pred Hhc
Q 016423 323 LQL 325 (390)
Q Consensus 323 ~~~ 325 (390)
...
T Consensus 287 ~~~ 289 (462)
T 1ibr_B 287 CDE 289 (462)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.34 E-value=0.004 Score=69.86 Aligned_cols=189 Identities=15% Similarity=0.136 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc---------ccCCCCChHHHHHHHHHHHHHhhCChHH-----
Q 016423 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN---------GQLNHPDTDIRKISAWILGKASQNNPLV----- 196 (390)
Q Consensus 131 ~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn---------~lL~s~~~~vR~~Aa~vLgta~QNNp~~----- 196 (390)
..+...++.+.+ .+.+.|..|...|..+++.+.... ..|.++++.+|..|+.+|+.++..-+..
T Consensus 48 ~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 48 KVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 566667777763 467778888888888777654322 4567888899999999999998764432
Q ss_pred -HHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 016423 197 -QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 274 (390)
Q Consensus 197 -Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~ 274 (390)
+.... ...+|.|+..+. +++..++..|+.+++.++..++.....+. ..-++.|...|.++ +..+|.+|+..|..
T Consensus 126 ~~~~~~-~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~--~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 126 LAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP--RLAVRKRTIIALGH 201 (1230)
T ss_dssp THHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS--SHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC--cHHHHHHHHHHHHH
Confidence 22222 247899999998 46678999999999999976554333221 33456677777765 56789999988888
Q ss_pred Hhhhh---------------hhcC-CCCCch---------------hhh--hcCchHHHHHhhcCCChhHHHHHHHHHHH
Q 016423 275 LAKCQ---------------LENM-HKVEPP---------------LFR--DRFFLKSVVDLTASADLDLQEKALAAIKN 321 (390)
Q Consensus 275 L~~~~---------------l~~~-~~~~~~---------------~l~--~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~ 321 (390)
++... +... ++..+. .+. -..+++.+...+..++.++++.++.++..
T Consensus 202 l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~ 281 (1230)
T 1u6g_C 202 LVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES 281 (1230)
T ss_dssp HTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 76421 0000 011111 010 13567777777887888999999999999
Q ss_pred HHhc
Q 016423 322 LLQL 325 (390)
Q Consensus 322 L~~~ 325 (390)
++..
T Consensus 282 l~~~ 285 (1230)
T 1u6g_C 282 FVRR 285 (1230)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8874
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.29 E-value=0.00056 Score=62.65 Aligned_cols=141 Identities=14% Similarity=0.086 Sum_probs=106.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
..+++.+-..|..|+..|+.++..+|.....-+ ...++.|..++. +.+..++..|+.+++.++++-.+....+ ...-
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-~~~i 99 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-ASAC 99 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-HHHH
Confidence 456788999999999999999988654311101 135778888884 7778899999999999997654433332 2345
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
++.|...+.++ ...+|..|..+|..++. ... + ..+++.+...|.+.+..+++.++.+|..++..
T Consensus 100 lp~ll~~l~d~--~~~vr~~a~~aL~~~~~------~~~----~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 100 VPSLLEKFKEK--KPNVVTALREAIDAIYA------STS----L--EAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHGGGCC--CHHHHHHHHHHHHHHHT------TSC----H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHHH------cCC----H--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 78888888886 56789999999999984 111 1 24778889999999999999999999997653
No 70
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.28 E-value=0.00011 Score=61.22 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=64.3
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+|+++++.||..|+++||.+.. + .+++.|+.++++++..||..|++||+.+- ....++
T Consensus 50 ~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-----------~~~a~~ 107 (131)
T 1te4_A 50 SLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG-----------GERVRA 107 (131)
T ss_dssp GGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC-----------SHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHH
Confidence 4667899999999999999842 1 25899999998888899999999999873 123578
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHH
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGD 274 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~ 274 (390)
.|..++.++ +..+|..|+..|..
T Consensus 108 ~L~~~l~d~--~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 108 AMEKLAETG--TGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHh
Confidence 889999865 56688888877653
No 71
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.27 E-value=0.00093 Score=71.25 Aligned_cols=138 Identities=9% Similarity=0.039 Sum_probs=101.1
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc-chHHHHHcCcHHHHH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQ 252 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~-a~~~f~~~gGl~~L~ 252 (390)
++..+|..|+.+++.+++..+. .++. ..+|.+...+.+.+..+|..|+++++++..+..+ ....+. ..-++.|.
T Consensus 340 ~~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~ 414 (876)
T 1qgr_A 340 DDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLI 414 (876)
T ss_dssp TCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCcH---hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHH
Confidence 4567999999999999877542 2222 4577777888877788999999999999987663 222322 44678888
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC--CchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV--EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~--~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..|.++ +..+|..|++++..++... .+. ..+. -..+++.+...|..+ ..+++.++.+|..+...
T Consensus 415 ~~l~d~--~~~vr~~a~~~l~~~~~~~----~~~~~~~~~--l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 415 ELMKDP--SVVVRDTAAWTVGRICELL----PEAAINDVY--LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHTCS--SHHHHHHHHHHHHHHHHHC----GGGTSSTTT--HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHhCCC--CHHHHHHHHHHHHHHHHhC----chhcccHHH--HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 999876 5779999999999998621 111 1111 236677888888774 88999999999999863
No 72
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.09 E-value=0.0035 Score=66.61 Aligned_cols=187 Identities=10% Similarity=0.044 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc----------------ccccc---------ccCCCCChHHHHHHHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP----------------IDNAN---------GQLNHPDTDIRKISAW 184 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~----------------IDnAn---------~lL~s~~~~vR~~Aa~ 184 (390)
+.....+++++.+.+.+.+-|..|.--|..+|.. ++... ..|.++++.+|..++.
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~ 117 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQ 117 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 4566667777776655667776666666655531 33221 4567888999999999
Q ss_pred HHHHHhhCC-hHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccch---HHHHHcCcHHHHHHHhcCCC
Q 016423 185 ILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQ---EMFYVEAGDLMLQDILGNSS 259 (390)
Q Consensus 185 vLgta~QNN-p~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~---~~f~~~gGl~~L~~lL~s~~ 259 (390)
+|+.++... |.. .+ ...+|.|+..+.++ +..++..++.+++.++....+.. ..+ ...-++.+...+.++.
T Consensus 118 ~l~~i~~~~~p~~-~w---~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~ 192 (861)
T 2bpt_A 118 LIAAIADIELPHG-AW---PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTE 192 (861)
T ss_dssp HHHHHHHHHGGGT-CC---HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhhCccc-cc---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCC
Confidence 999997663 210 00 13688899999887 77889999999999998765431 111 1224566677777652
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 260 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 260 ~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.+..+|..|+..+..++... ............+++.+...+.+++..++..++.+|..++..
T Consensus 193 ~~~~vr~~al~~l~~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 193 TSKAVRLAALNALADSLIFI----KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp CCHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH----HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 25678999999999876310 000000001123677777888888999999999999998863
No 73
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.05 E-value=0.013 Score=61.89 Aligned_cols=162 Identities=17% Similarity=0.097 Sum_probs=119.8
Q ss_pred CCCCHHHHHHHHHHHHHhh---ccccccc----ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC
Q 016423 143 STLSLEDSQRALQELLILV---EPIDNAN----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 215 (390)
Q Consensus 143 ~~~s~e~~~~aLd~Le~lv---e~IDnAn----~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s 215 (390)
+..+..+|..++-.+.++. ++++.+- +++.+++..+|..+--.+...+..+|..-.. +++.+.+=+.+
T Consensus 48 ~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~ 122 (621)
T 2vgl_A 48 KALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLAS 122 (621)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCC
Confidence 3456677777776665543 2333332 7888999999999999999999888754322 35566667778
Q ss_pred CCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh--cCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhh
Q 016423 216 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 293 (390)
Q Consensus 216 ~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL--~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~ 293 (390)
.++-+|.-|+.+||++. . +. +. ..-.+.+..+| .+. ++.+|.+|+..+..+.. .+|+..+ .
T Consensus 123 ~n~~ir~lALr~L~~i~-~-~e----~~-~~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~-----~~p~~~~---~ 185 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVG-S-RE----MA-EAFAGEIPKILVAGDT--MDSVKQSAALCLLRLYR-----TSPDLVP---M 185 (621)
T ss_dssp CCHHHHHHHHHHHHHHC-C-HH----HH-HHHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHH-----HCGGGCC---C
T ss_pred CCHHHHHHHHHHhhccC-C-HH----HH-HHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHH-----hChhhcC---c
Confidence 88888999999999983 2 22 21 23456778888 544 78899999999999995 2443322 3
Q ss_pred cCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 294 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 294 ~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.+|++.+..+|...|+.++..|+.++..+....
T Consensus 186 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 186 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 599999999999889999999999999988754
No 74
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.96 E-value=0.0082 Score=58.91 Aligned_cols=148 Identities=14% Similarity=0.077 Sum_probs=113.0
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHc-CcHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLM 250 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~-gGl~~ 250 (390)
.+.+...+..|..-|..+.|..+..-..|++.+|+..|+++....+......+|.|+.++.- |..+...++.+ ..+.-
T Consensus 128 ~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~~~fI~~ 206 (339)
T 3dad_A 128 YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAHSDTIQW 206 (339)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCCHHHHHH
Confidence 35566667788888888888777788889999999999999988877889999999999975 57777666643 46777
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhh--------hc--CchHHHHHhhc---CCChhHHHHHHH
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--------DR--FFLKSVVDLTA---SADLDLQEKALA 317 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~--------~~--g~v~~Lv~lL~---~~d~~v~EkAL~ 317 (390)
|..++.+. +..+.+.|+.+|-.++.. .+.....+. +. -....|+.+|+ +.|.+++.+|+.
T Consensus 207 lyslv~s~--~~~V~k~AL~LL~v~V~~-----se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 207 LYTLCASL--SRLVVKTALKLLLVFVEY-----SENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHcCc--cHHHHHHHHHHHHHHHcc-----CcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 78887764 677888899999999852 222222221 12 24678899997 679999999999
Q ss_pred HHHHHHhcCh
Q 016423 318 AIKNLLQLRT 327 (390)
Q Consensus 318 aL~~L~~~~~ 327 (390)
.+..+....+
T Consensus 280 LIN~lL~~ap 289 (339)
T 3dad_A 280 LINKTLAALP 289 (339)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHhcCC
Confidence 9988887654
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0021 Score=60.01 Aligned_cols=150 Identities=8% Similarity=0.010 Sum_probs=108.2
Q ss_pred ccCCCCChHHHHHHHHHHHH-HhhCChHHHHHHHh-cCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCc-cchH-HHH
Q 016423 169 GQLNHPDTDIRKISAWILGK-ASQNNPLVQKQVLE-LGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNL-AGQE-MFY 243 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgt-a~QNNp~~Q~~~le-~g~l~~Ll~LL-~s~~~~vr~kAL~ALSsLiR~~~-~a~~-~f~ 243 (390)
..+.|++-.-|..|...|+. ++.++|+....-.+ ...+..|.+.+ ++.+..++..|+.||+.++.+-. +... .+.
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 45688999999999999999 98777654310001 13467778888 56677889999999999997765 5544 332
Q ss_pred HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 244 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 244 ~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
.--++.++..+.+. ...++..+..++..++.. .++..... .-..+++.|...|++.+..+++.++.+|..++
T Consensus 103 -~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~----~~~~~~~~-~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 103 -SLVFTPLLDRTKEK--KPSVIEAIRKALLTICKY----YDPLASSG-RNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp -HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHH----SCTTCTTC-TTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH----ccccccCC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 23578888888876 356888888888888852 23321110 01247788899999999999999999999999
Q ss_pred hcC
Q 016423 324 QLR 326 (390)
Q Consensus 324 ~~~ 326 (390)
...
T Consensus 175 ~~~ 177 (249)
T 2qk1_A 175 KEE 177 (249)
T ss_dssp HHC
T ss_pred HHc
Confidence 754
No 76
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.57 E-value=0.05 Score=53.37 Aligned_cols=181 Identities=15% Similarity=0.070 Sum_probs=127.2
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-ccccccc------------ccCCCCChHHHHHHHHHHHHHhhCCh
Q 016423 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNAN------------GQLNHPDTDIRKISAWILGKASQNNP 194 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lv-e~IDnAn------------~lL~s~~~~vR~~Aa~vLgta~QNNp 194 (390)
++.....++++.|.+ .+.+++..+|..|..++ ++.|-|. +.....+...+..+..+++.+.-. .
T Consensus 115 sps~ra~~iiekL~~--~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v 191 (339)
T 3dad_A 115 QLSVRVNAILEKLYS--SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-V 191 (339)
T ss_dssp CHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-H
T ss_pred CcHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-c
Confidence 455778888888885 46788999999999844 6788887 334567889999999999999654 3
Q ss_pred HHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHH-------HcCc---HHHHHHHhcC-CChhH
Q 016423 195 LVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-------VEAG---DLMLQDILGN-SSFEI 262 (390)
Q Consensus 195 ~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~-------~~gG---l~~L~~lL~s-~~~d~ 262 (390)
.--+.++++ ..|..|..++.+....|...|+.-|-++|-..+.+...+. ...| |+.|+.+|++ ++.|.
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 333344433 5788899999976677877888888888777654443332 2334 8999999972 22478
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCC----CCchhhhhcCchHHHHHhhcCC--ChhHHHH
Q 016423 263 RLHRKAVSLVGDLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASA--DLDLQEK 314 (390)
Q Consensus 263 klr~KA~~LLs~L~~~~l~~~~~----~~~~~l~~~g~v~~Lv~lL~~~--d~~v~Ek 314 (390)
.++.+|..||..++... .+. +..+.+.+.|+-..+...++.. |.+++++
T Consensus 272 elq~~amtLIN~lL~~a---pd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 272 ELLVYTVTLINKTLAAL---PDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 89999999999998621 111 2344566677666666666654 5455444
No 77
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.35 E-value=0.011 Score=62.28 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhccccccc-------ccC--CCCChHHHHHHHHHHHHHhhCChHH
Q 016423 128 SDAQLIQIAIDDLNNS--TLSLEDSQRALQELLILVEPIDNAN-------GQL--NHPDTDIRKISAWILGKASQNNPLV 196 (390)
Q Consensus 128 ~d~~~Mk~~l~~l~~~--~~s~e~~~~aLd~Le~lve~IDnAn-------~lL--~s~~~~vR~~Aa~vLgta~QNNp~~ 196 (390)
.+.+.|.-++..+.+. +..+-.+--||-.|-.+.. -+.+. ++| .+.++-||..|+-++..+.+.+|..
T Consensus 104 ~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 104 SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh
Confidence 4456555555544332 1234445556666654432 12222 678 8899999999999999999988854
Q ss_pred HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc
Q 016423 197 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 238 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a 238 (390)
-. ..++++.|.++|.+.+..|+..|+.++..++.+++..
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence 32 2478999999998888899999999999999887653
No 78
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.22 E-value=0.021 Score=53.65 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=93.4
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhh-hhc
Q 016423 204 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ-LEN 282 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~-l~~ 282 (390)
+.+..|+.+|++++..++..++++|.-++..-+.....-.-..+++-++.++.++ +.|+-.||..+|..|+... +..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~--dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE--NEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST--THHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHcCCCCCH
Confidence 3578899999998899999999999999998776666666678999999999876 7899999999999998521 000
Q ss_pred ----------------CCC-----------CCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 283 ----------------MHK-----------VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 283 ----------------~~~-----------~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
.++ ..+..-...+++..+..++.+.|..++..+++++.+++...
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 000 00001113567778888888899999999999999999854
No 79
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.81 E-value=1.4 Score=43.62 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=103.9
Q ss_pred HHHHhhCCh-HHHHHHHhcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCccchHHHHHcC-cHHHHH
Q 016423 186 LGKASQNNP-LVQKQVLELGALSKLMKMVKS-----------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEA-GDLMLQ 252 (390)
Q Consensus 186 Lgta~QNNp-~~Q~~~le~g~l~~Ll~LL~s-----------~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g-Gl~~L~ 252 (390)
|-....++| ..=+.|. .+|+..|+.+|.. .+......++.||.+++ |+..+...+..+. ++..|.
T Consensus 91 L~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~ 168 (383)
T 3eg5_B 91 LRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLV 168 (383)
T ss_dssp HHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHH
Confidence 333334443 3334465 6789999999842 11234556777777776 6677888777654 689999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC-ch----h------hhhcCchHHHHHhhcC-CChhHHHHHHHHHH
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PP----L------FRDRFFLKSVVDLTAS-ADLDLQEKALAAIK 320 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~-~~----~------l~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~ 320 (390)
.+|.++ .++++.-|+-+|..+|.. ..+.. .+ . ..+..-...+++.|.. .+.+++..++..+.
T Consensus 169 ~~L~s~--~~~~~~~aleLL~~lc~~----~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN 242 (383)
T 3eg5_B 169 RAMDPA--VPNMMIDAAKLLSALCIL----PQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN 242 (383)
T ss_dssp HTCCTT--SHHHHHHHHHHHHHHHTC----CSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHhCCC--chHHHHHHHHHHHHHHhC----cCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 998876 677888899999988841 11111 11 1 2334456778888887 58899999999999
Q ss_pred HHHhcChh------HHHHHHhhCCcHHHHHHHHH
Q 016423 321 NLLQLRTT------EALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 321 ~L~~~~~~------~r~~~~~~~gL~~~L~~Lr~ 348 (390)
.++...++ -|.+|. .+|+.+.+.+|+.
T Consensus 243 ~li~~~~dl~~R~~lR~ef~-~~Gl~~il~~lr~ 275 (383)
T 3eg5_B 243 ALITPAEELDFRVHIRSELM-RLGLHQVLQELRE 275 (383)
T ss_dssp HHHTTCCCHHHHHHHHHHHH-HTTHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHH-HCChHHHHHHHhc
Confidence 99986543 344454 7999999988875
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.52 E-value=0.29 Score=48.29 Aligned_cols=131 Identities=11% Similarity=0.069 Sum_probs=83.7
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
++.+++..+|...--.+-..+..+ ++.++ +.+.|.+=++++++-+|.-|+-+++++.-. .-.+. -..
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~~---~e~iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-----l~~ 142 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCIA---EDVII---VTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-----IER 142 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTTS---SCGGG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH-----HHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCCH---HHHHH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH-----HHH
Confidence 556777777777776666665542 22222 456666666776766777888888877322 11122 234
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
.+..+|.+. ++.+|++|+.....|+. ..|+ +++ +|+..+-+++...|+-++-+|+.+|..+...
T Consensus 143 ~lk~~L~d~--~pyVRk~A~l~~~kL~~-----~~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 143 YMKQAIVDK--VPSVSSSALVSSLHLLK-----CSFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHHHTCS--SHHHHHHHHHHHHHHTT-----TCHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHHHhc-----cCHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 577777766 56778888888777763 2222 222 5777888888777878887777777777653
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.42 E-value=0.59 Score=44.29 Aligned_cols=160 Identities=12% Similarity=0.073 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHhhcccccc---c-----c----cCCCCChHHHHHHHHHHHHHhh----CChHHHHHHHhcCcHHHH
Q 016423 146 SLEDSQRALQELLILVEPIDNA---N-----G----QLNHPDTDIRKISAWILGKASQ----NNPLVQKQVLELGALSKL 209 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnA---n-----~----lL~s~~~~vR~~Aa~vLgta~Q----NNp~~Q~~~le~g~l~~L 209 (390)
+-.++..+++.|...+++.... + + -+.+++..|-..+..+|..++. .++...+.-. .-.+|.|
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~L 137 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPYL 137 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHHH
Confidence 4456666666666655532111 0 1 1235688888888888877643 2222222111 1257999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCch
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 289 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~ 289 (390)
+.-+.+..+.+|.++-..+-.+..-+|+. .. ++.+...+.+. +.|.|.-.+..+.+++... + ..
T Consensus 138 veKlGd~k~~vR~~~r~il~~l~~v~~~~-~v------~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~---G-~~--- 201 (266)
T 2of3_A 138 LLKTGEAKDNMRTSVRDIVNVLSDVVGPL-KM------TPMLLDALKSK--NARQRSECLLVIEYYITNA---G-IS--- 201 (266)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHHHCHH-HH------HHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH---C-SG---
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHCCHH-HH------HHHHHHHHccC--CHHHHHHHHHHHHHHHHhc---C-CC---
Confidence 99998888888887766665554334442 22 24567778776 5789999999999999643 1 11
Q ss_pred hhhhcCch---HHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 290 LFRDRFFL---KSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 290 ~l~~~g~v---~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
....+ +.+..++...|..+++.|++|+..+..+
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 13467 9999999999999999999999987765
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.13 E-value=1.9 Score=39.33 Aligned_cols=187 Identities=16% Similarity=0.184 Sum_probs=121.2
Q ss_pred HHHHHHHHHHcCCCCh-HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhh
Q 016423 114 QMEIKELMEKLKTPSD-AQLIQIAIDDLNNSTLS-LEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQ 191 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d-~~~Mk~~l~~l~~~~~s-~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~Q 191 (390)
+++|++.+..+ +|| ...-|.++.++..-.-+ ++-..-+++.|.-++. +|+.-.+-..-+..+|+++.
T Consensus 31 ~~~l~~lI~~L--DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---------ksEaIpltqeIa~a~G~la~ 99 (253)
T 2db0_A 31 ESVLKKLIELL--DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---------KSEAIPLTQEIAKAFGQMAK 99 (253)
T ss_dssp HHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---------HCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---------hcccCchHHHHHHHHhHHHH
Confidence 34555555432 222 34555666555443222 2222333344332221 46666776778899999999
Q ss_pred CChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHH
Q 016423 192 NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 271 (390)
Q Consensus 192 NNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~L 271 (390)
-||..-.. .+|.|..-..-.++..+..--|||.-+.|.||....-+ +.-+...+.+++.. =|.-|+.+
T Consensus 100 i~Pe~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~--Dkl~aLnF 167 (253)
T 2db0_A 100 EKPELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNRE--DKLTALNF 167 (253)
T ss_dssp HCHHHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHH--HHHHHHHH
T ss_pred hCHHHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChH--HHHHHHHH
Confidence 99965443 57777777777778889999999999999999864433 23455667766322 34466677
Q ss_pred HHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHH
Q 016423 272 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVL 333 (390)
Q Consensus 272 Ls~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~ 333 (390)
|..|-. .....+ .-+++.|..+|...|.-++-.|..+|..|+..++.-|..+
T Consensus 168 i~alGe--------n~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 168 IEAMGE--------NSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp HHTCCT--------TTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHhc--------cCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 766642 222222 3678999999999999999999999999999876544433
No 83
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.87 E-value=0.59 Score=47.94 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 209 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~L 209 (390)
.+.+.+..++|.++.....+.......+.. ....++..+..|++.|..-...=|..|+. +|..+
T Consensus 7 ie~LY~~~~~L~da~dk~~~~~~~y~~Il~-----------~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~ 70 (507)
T 3u0r_A 7 VEELYRNYGILADATEQVGQHKDAYQVILD-----------GVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQ 70 (507)
T ss_dssp HHHHHHHHHHHHHTGGGGGGGHHHHHHHHH-----------GGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHH
T ss_pred HHHHHHHhhHhhhccccccccHHHHHHHHH-----------hcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHH
Confidence 677778888887765332333333333322 12357899999999999999999999998 56678
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCCh-hHHHHHHHHHHHHHHhhhhhhcCCCCCc
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF-EIRLHRKAVSLVGDLAKCQLENMHKVEP 288 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~-d~klr~KA~~LLs~L~~~~l~~~~~~~~ 288 (390)
+.|..+++..+|..|+-.|..+|++ ..... -..+|.++|+++.. ...+.. ..|..|+. .+
T Consensus 71 lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~QlLqtdd~~E~~~V~---~sL~sllk-----~D---- 131 (507)
T 3u0r_A 71 LDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILTQLLQTDDSAEFNLVN---NALLSIFK-----MD---- 131 (507)
T ss_dssp HHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHHHHTTCCCHHHHHHHH---HHHHHHHH-----HC----
T ss_pred HHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHHHHHhccchHHHHHHH---HHHHHHHh-----cC----
Confidence 9999999999999999999999998 32333 35689999997632 222222 23333332 11
Q ss_pred hhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 289 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 289 ~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
..+.+..+...+.+.+..+||+++..|..=+
T Consensus 132 ----pk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 132 ----AKGTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp ----HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred ----hHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 1244444444444456778888877765433
No 84
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.37 E-value=0.98 Score=48.93 Aligned_cols=138 Identities=13% Similarity=0.069 Sum_probs=92.4
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL---~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+.+-..+..|++++|.++..-+... ...++.++..+ .++++.+|..++|+|+.+.+...... .+. ..-+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 45677889999999999987633211 23345555444 33456789999999999876533222 222 4567
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhcC
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~~ 326 (390)
+.|...|.+ ++++..|+.++.+++.. ....+.+.+ ..++..+..++... +.+.++.++.+++.++...
T Consensus 532 ~~l~~~l~~----~~V~~~A~~al~~l~~~----~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 532 PLVLHALGN----PELSVSSVSTLKKICRE----CKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHTTC----GGGHHHHHHHHHHHHHH----TGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCC----chHHHHHHHHHHHHHHH----HHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 888888864 46899999999999952 222222322 34566666667653 5688999999999998643
No 85
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.27 E-value=0.89 Score=41.76 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=97.2
Q ss_pred HHHHHhcCcHHHHHHhhcCC-----------CHHHHHHHHHHHHHHhhCCccchHHHHHc-CcHHHHHHHhcCCChhHHH
Q 016423 197 QKQVLELGALSKLMKMVKSS-----------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRL 264 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s~-----------~~~vr~kAL~ALSsLiR~~~~a~~~f~~~-gGl~~L~~lL~s~~~d~kl 264 (390)
=+.| ..+|+..|+.+|..- .......++.+|.+++ |++.+...+..+ +++..|...|.++ .+++
T Consensus 37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~ 112 (233)
T 2f31_A 37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNM 112 (233)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTT--SHHH
T ss_pred HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCC--CchH
Confidence 3445 467788888887521 1133456777777775 667888877765 4688888888765 6788
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCC-ch----h------hhhcCchHHHHHhhcC-CChhHHHHHHHHHHHHHhcChh----
Q 016423 265 HRKAVSLVGDLAKCQLENMHKVE-PP----L------FRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRTT---- 328 (390)
Q Consensus 265 r~KA~~LLs~L~~~~l~~~~~~~-~~----~------l~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~~L~~~~~~---- 328 (390)
+.-++-+|+.+|.- .+++- .+ . ..+..-...+++.|.. .+.+++-.++..+..|+...++
T Consensus 113 r~~~leLL~~lc~~----~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R 188 (233)
T 2f31_A 113 MIDAAKLLSALCIL----PQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR 188 (233)
T ss_dssp HHHHHHHHHHHHTC----SSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHhC----CCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 88999999988851 11111 11 1 1233445567777774 5789999999999999987652
Q ss_pred --HHHHHHhhCCcHHHHHHHHH
Q 016423 329 --EALVLKDFCGLDTALERLRQ 348 (390)
Q Consensus 329 --~r~~~~~~~gL~~~L~~Lr~ 348 (390)
-|.+|. .+|+.+.+++||.
T Consensus 189 ~~lR~ef~-~~Gl~~il~~l~~ 209 (233)
T 2f31_A 189 VHIRSELM-RLGLHQVLQELRE 209 (233)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHH
T ss_pred HHHHHHHH-HCChHHHHHHHhc
Confidence 345555 7999999998875
No 86
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.18 E-value=0.97 Score=42.72 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc---------------------ccCCCCC----hHHHH-HHHH
Q 016423 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN---------------------GQLNHPD----TDIRK-ISAW 184 (390)
Q Consensus 131 ~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn---------------------~lL~s~~----~~vR~-~Aa~ 184 (390)
+.|.+.+..|.++ +.|+.||-+|..--|++++-. .+|+.+. ..-|. .|..
T Consensus 3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 3445555555555 468888888888777765422 3444322 22232 2333
Q ss_pred HHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhCCccchHHH-HHcCcHHHHHHHhcCC
Q 016423 185 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMF-YVEAGDLMLQDILGNS 258 (390)
Q Consensus 185 vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~-----~~vr~kAL~ALSsLiR~~~~a~~~f-~~~gGl~~L~~lL~s~ 258 (390)
++-.+| .||+.+..|++.+..--|...|+..+ +-+|..+|.-|+++++...+-.-.| ...+-++...+++...
T Consensus 79 LlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 79 LLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence 344454 58999999999986666777776554 2479999999999999755554444 5666789999998865
Q ss_pred ChhHHHHHHHHHHHHHHhhhh--hhcCCCCCchhh-hhcCchHHHHH-hhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 259 SFEIRLHRKAVSLVGDLAKCQ--LENMHKVEPPLF-RDRFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 259 ~~d~klr~KA~~LLs~L~~~~--l~~~~~~~~~~l-~~~g~v~~Lv~-lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
+.--|.-|.|.+..++... +.... ...+.| .=..++..+|. +...++..+..++.+|-..|... +..|..++
T Consensus 158 --selSKtvAtfIlqKIL~dd~GL~YiC-~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~aL~ 233 (268)
T 2fv2_A 158 --SELSKTVATFILQKILLDDTGLAYIC-QTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREALR 233 (268)
T ss_dssp --CHHHHHHHHHHHHHHHHSHHHHHHHT-SSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHhccchhHHHHH-ccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 3446888999999998521 10000 111111 11233333443 34556888999999998888864 34555444
No 87
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=94.13 E-value=0.18 Score=44.26 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-.......|...+.+..+.++.....+.+-..++-. -|++.++.++-.|..+|-++++| .+
T Consensus 19 ~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~k-------------rl~~~n~~vql~AL~LLd~~vkNcG~ 85 (163)
T 1x5b_A 19 DVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMK-------------RVNHKVPHVALQALTLLGACVANCGK 85 (163)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 45555544444567788888888888765444444443322 35778999999999999999999 57
Q ss_pred HHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHh
Q 016423 195 LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLI 232 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s-~~~~vr~kAL~ALSsLi 232 (390)
.++..+.....+..|+++++. .+..|+.|++..|-.-.
T Consensus 86 ~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 86 IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 788888888889999999975 34678888877665543
No 88
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=93.86 E-value=0.27 Score=42.47 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-.......|...+-+..+.++.....+.+-..++- +-|++.++.++-.|..+|-++++| .+
T Consensus 5 ~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~-------------krl~~~n~~vql~AL~LLe~~vkNCG~ 71 (148)
T 1mhq_A 5 WLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLA-------------HKIQSPQEKEALYALTVLEMCMNHCGE 71 (148)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHH-------------HHHTCSSHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHH-------------HHhcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 3444444433345677777777777765433333333221 235789999999999999999999 67
Q ss_pred HHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhCC
Q 016423 195 LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s------~~~~vr~kAL~ALSsLiR~~ 235 (390)
.++..+.....+..|+++++. .+..|+.|++..|-+-...+
T Consensus 72 ~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 72 KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 899999888999999999974 35688998887776654443
No 89
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=93.80 E-value=0.2 Score=44.39 Aligned_cols=107 Identities=15% Similarity=0.080 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-.......|...+.+..+.++.......+-..+|- +-|++.++.++-.|..+|-++++| .+
T Consensus 17 ~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~-------------krl~~~n~~vql~AL~LLd~~vkNCG~ 83 (171)
T 1juq_A 17 WLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLA-------------HKIQSPQEWEALQALTVLEACMKNCGR 83 (171)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHH-------------HHHTCSSHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHH-------------HHhcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 3444444333445677777888888776544433333322 235788999999999999999999 46
Q ss_pred HHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhCC
Q 016423 195 LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s------~~~~vr~kAL~ALSsLiR~~ 235 (390)
.++..+.....+..|+++++. .+..|+.|++..|-+-...+
T Consensus 84 ~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 84 RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 788888888999999999963 24678999887777654443
No 90
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.71 E-value=0.23 Score=42.48 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=74.6
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-ChH
Q 016423 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NPL 195 (390)
Q Consensus 117 L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np~ 195 (390)
+.+|-.......|...+.+..+.++.....+.+-..++.. -|++.++.++..|..+|-++++| .+.
T Consensus 10 iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~K-------------rl~~~n~~~ql~AL~LLe~~vkNcG~~ 76 (140)
T 3ldz_A 10 VEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMR-------------RVNHKDPHVAMQALTLLGACVSNCGKI 76 (140)
T ss_dssp HHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHH-------------HHcCCChHHHHHHHHHHHHHHHhcCHH
Confidence 3444444334567888888888888765444444443322 35778999999999999999999 477
Q ss_pred HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016423 196 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 232 (390)
Q Consensus 196 ~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLi 232 (390)
.+..+.....+..|+++++..+..|+.|.+..|-+-.
T Consensus 77 f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 77 FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 7877777778888889887667789888877776653
No 91
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.68 E-value=0.31 Score=42.23 Aligned_cols=108 Identities=17% Similarity=0.090 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-+......|...+.+..+.++.....+.+-..+|-. -|++.++.++-.|..+|-++++| .+
T Consensus 15 ~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~k-------------rl~~~n~~v~l~AL~LLe~cvkNCG~ 81 (149)
T 3g2s_A 15 RINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAH-------------KIQSPQEWEAIQALTVLETCMKSCGK 81 (149)
T ss_dssp HHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHhcCH
Confidence 44555444334567888888888888766555544444322 24788999999999999999999 56
Q ss_pred HHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhhCCc
Q 016423 195 LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL 236 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s------~~~~vr~kAL~ALSsLiR~~~ 236 (390)
.++..+.....+..|+++++. .+..|+.|.+..|-+-...++
T Consensus 82 ~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 82 RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 778888888899999999974 356899998887777655443
No 92
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=93.25 E-value=0.46 Score=43.72 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhC-Ch
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQN-NP 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QN-Np 194 (390)
++.+|-+......|...+.+..+.++.......+-..+|.. -|++.++.++-.|..+|-++++| .+
T Consensus 12 ~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~k-------------rl~~~n~~v~l~aL~LLe~~vkNcG~ 78 (226)
T 3zyq_A 12 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKK-------------KVNDKNPHVALYALEVMESVVKNCGQ 78 (226)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHHhcch
Confidence 44444444344567778888888887765555554444322 24789999999999999999999 66
Q ss_pred HHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhC
Q 016423 195 LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~ 234 (390)
..+..+.....+..|.++++.. +..|+.|++..|-+....
T Consensus 79 ~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 79 TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 6888888888888888888653 467899988877766443
No 93
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.14 E-value=3 Score=40.91 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=87.9
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
+=++++++-+|..|...+|.+.-.. -++ ...+.+-+.+.+.++-||.+|+.+..-+++.+|...+ +.+
T Consensus 111 kDl~~~N~~iR~lALRtL~~I~~~~-m~~------~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~ 178 (355)
T 3tjz_B 111 KDMTGKEDSYRGPAVRALCQITDST-MLQ------AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWV 178 (355)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCTT-THH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTH
T ss_pred hhcCCCcHhHHHHHHHHHhcCCCHH-HHH------HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHH
Confidence 4457889999999999999995543 122 2456677888888888999999999999888777543 466
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhh----------hhcC---CCC-Cchhh-------------hhcCchHHHH
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----------LENM---HKV-EPPLF-------------RDRFFLKSVV 301 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~----------l~~~---~~~-~~~~l-------------~~~g~v~~Lv 301 (390)
+-+.+++.+. ++-++..|+.+++.+...- +... ++- ....+ ....+++.+.
T Consensus 179 ~~l~~ll~d~--n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~ 256 (355)
T 3tjz_B 179 NEAQEAASSD--NIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIE 256 (355)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------
T ss_pred HHHHHHhcCC--CccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 7788888775 4557788888888776410 0000 000 00000 1234566666
Q ss_pred HhhcCCChhHHHHHHHHHHHHHh
Q 016423 302 DLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 302 ~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
.+|++.+..|.-.|.+++..|..
T Consensus 257 ~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 257 SCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp CCCCCSSHHHHHHHHHHHTC---
T ss_pred HHHcCCChHHHHHHHHHHHhccC
Confidence 77777777788777777777654
No 94
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.11 E-value=2.4 Score=42.04 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=95.3
Q ss_pred cCcHHHHHHhhcCC-----------CHHHHHHHHHHHHHHhhCCccchHHHHHc-CcHHHHHHHhcCCChhHHHHHHHHH
Q 016423 203 LGALSKLMKMVKSS-----------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVS 270 (390)
Q Consensus 203 ~g~l~~Ll~LL~s~-----------~~~vr~kAL~ALSsLiR~~~~a~~~f~~~-gGl~~L~~lL~s~~~d~klr~KA~~ 270 (390)
.+|+..|+.+|..- .......++.+|.+++ |++.+...+..+ +++..|..+|.++ .++++.-++-
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vle 122 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAK 122 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHH
Confidence 56777777777411 1234557778887775 567777777665 4688888888765 6788888988
Q ss_pred HHHHHhhhhhhcCCCCC-ch----------hhhhcCchHHHHHhhc-CCChhHHHHHHHHHHHHHhcChh------HHHH
Q 016423 271 LVGDLAKCQLENMHKVE-PP----------LFRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTT------EALV 332 (390)
Q Consensus 271 LLs~L~~~~l~~~~~~~-~~----------~l~~~g~v~~Lv~lL~-~~d~~v~EkAL~aL~~L~~~~~~------~r~~ 332 (390)
+|..+|.. ..+.- .+ ...+..-...+++.|. +.+.+++..++..+..|+...++ -|.+
T Consensus 123 LL~alc~~----~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~E 198 (386)
T 2bnx_A 123 LLSALCIL----PQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSE 198 (386)
T ss_dssp HHHHHHTC----CSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHcC----CCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99988851 11111 11 1223445566778786 45789999999999999987653 4555
Q ss_pred HHhhCCcHHHHHHHHH
Q 016423 333 LKDFCGLDTALERLRQ 348 (390)
Q Consensus 333 ~~~~~gL~~~L~~Lr~ 348 (390)
|. .+|+.+.++.||.
T Consensus 199 f~-~~GL~~il~~Lr~ 213 (386)
T 2bnx_A 199 LM-RLGLHQVLQELRE 213 (386)
T ss_dssp HH-HTTHHHHHHHHTT
T ss_pred HH-HCChHHHHHHHhc
Confidence 65 7999999998876
No 95
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=93.00 E-value=0.091 Score=53.87 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCC
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~ 235 (390)
.++.+.+-||.=||..+...|..+..+-+.|+=..++.|+.+++++||..||.|+.-++.++
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 46778999999999999999999999999999999999999999999999999999988764
No 96
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=92.86 E-value=0.33 Score=54.24 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=88.3
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC---CHH--HHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVE--EAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~---~~~--vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+=..+++++|++|.++..-..-+..-+=..++|.|+.+.... ++. ++..++|.||...+...... .|. ..-+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~L-~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL-RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-HHH-HHHH
Confidence 5667999999999999876332222222234788888888631 122 44467799998766432111 121 2334
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhh---hhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~---l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..|...+.++ .++++..||+.+.+|+..- +...++.....+. ..++..+...+..-+..-+..+..+++.+++.
T Consensus 543 ~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~-~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI-QTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH-HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4566666554 5679999999999999731 1000111001111 12334444444545677778999999999986
Q ss_pred Ch
Q 016423 326 RT 327 (390)
Q Consensus 326 ~~ 327 (390)
.+
T Consensus 620 ~~ 621 (1023)
T 4hat_C 620 ER 621 (1023)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=92.05 E-value=1.5 Score=48.56 Aligned_cols=109 Identities=12% Similarity=0.006 Sum_probs=78.8
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc---ccCCCC---ChHHHHHHHHHHHHHhhCChHH---
Q 016423 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN---GQLNHP---DTDIRKISAWILGKASQNNPLV--- 196 (390)
Q Consensus 126 ~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn---~lL~s~---~~~vR~~Aa~vLgta~QNNp~~--- 196 (390)
+|-+++.+.+|++..-++.++.+.|..|.+-|+.+=++-|--. .+|.++ ++.+|.-|+.+|-+.++.-|..
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~ 80 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNL 80 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSH
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhH
Confidence 3557788888998888888899999999888887776644323 566543 6899999999999998854444
Q ss_pred -HHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhC
Q 016423 197 -QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 197 -Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~ 234 (390)
+...++...++.+...-. .++..++.|...+++.++..
T Consensus 81 ~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 81 LELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 566666666666665211 23456899999999998765
No 98
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.01 E-value=0.77 Score=50.22 Aligned_cols=145 Identities=11% Similarity=0.066 Sum_probs=86.7
Q ss_pred CCCC---ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc-------c-ch
Q 016423 171 LNHP---DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-------A-GQ 239 (390)
Q Consensus 171 L~s~---~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~-------~-a~ 239 (390)
|.++ ++-||.+|||+||..+..- +...+ ...++.++..+.+++..|+..|.+||..++.+.. . ..
T Consensus 464 l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~ 539 (960)
T 1wa5_C 464 LTSNNIPHIILRVDAIKYIYTFRNQL---TKAQL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHK 539 (960)
T ss_dssp HHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCG
T ss_pred hcCCCCCCceehHHHHHHHHHHHhhC---CHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccH
Confidence 4555 8899999999999997652 11222 2368889988887778899999999999998522 1 11
Q ss_pred HHHH--HcCcHHHHHHHhcCCC-hhHH--HHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhc----C-CCh
Q 016423 240 EMFY--VEAGDLMLQDILGNSS-FEIR--LHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA----S-ADL 309 (390)
Q Consensus 240 ~~f~--~~gGl~~L~~lL~s~~-~d~k--lr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~----~-~d~ 309 (390)
..+. -..-++.|..++.... ...+ ....+...|..++.. ..++..+.+. .+++.++..+. + ++.
T Consensus 540 ~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~----~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~ 613 (960)
T 1wa5_C 540 EDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQT----SEDSIQPLFP--QLLAQFIEIVTIMAKNPSNP 613 (960)
T ss_dssp GGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH----HTTTTGGGHH--HHHHHHHHHHHHHTTSCCCH
T ss_pred HHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHH----HHHhhhhHHH--HHHHHHHHHHHHHHhCCCCc
Confidence 2221 1223445555555420 0011 123455666666542 1334444322 34455554442 2 366
Q ss_pred hHHHHHHHHHHHHHhc
Q 016423 310 DLQEKALAAIKNLLQL 325 (390)
Q Consensus 310 ~v~EkAL~aL~~L~~~ 325 (390)
.+...++.+|+.++..
T Consensus 614 ~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 614 RFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7778889999888875
No 99
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=91.34 E-value=0.75 Score=39.94 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCC-CCChHHHHHHHHHHHHHhhCC-
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLN-HPDTDIRKISAWILGKASQNN- 193 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~-s~~~~vR~~Aa~vLgta~QNN- 193 (390)
++.+|-.......|...+.+..+.++.....+.+-..++-. -|+ +.++.++-.|..+|-++++|.
T Consensus 20 ~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~k-------------rl~~~~n~~v~l~AL~LLd~~vkNcG 86 (157)
T 1elk_A 20 RIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKK-------------RIVGNKNFHEVMLALTVLETCVKNCG 86 (157)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHH-------------HHTTCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHH-------------HhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 34444443333456777777777777654444333333221 244 578999999999999999995
Q ss_pred hHHHHHHHhcCcHHH-HHHhhcC---CCHHHHHHHHHHHHHH
Q 016423 194 PLVQKQVLELGALSK-LMKMVKS---SFVEEAVKALYTVSSL 231 (390)
Q Consensus 194 p~~Q~~~le~g~l~~-Ll~LL~s---~~~~vr~kAL~ALSsL 231 (390)
+..+..+.....+.. |++++.. .+..|+.|++..|-+-
T Consensus 87 ~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 87 HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 889988988889998 8898853 2357888887766654
No 100
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=90.68 E-value=2.3 Score=38.72 Aligned_cols=131 Identities=16% Similarity=0.188 Sum_probs=98.3
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 251 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L 251 (390)
.-.++.+|..-..+|+.++.+||..--. +..-+..|+.+.+..-+..|+.=|+++--|++.- ..--++-|
T Consensus 117 rigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGen~~~y-----v~PfLprL 186 (253)
T 2db0_A 117 RIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGENSFKY-----VNPFLPRI 186 (253)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHH-----HGGGHHHH
T ss_pred hcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhccCccc-----cCcchHHH
Confidence 4458999999999999999999976544 4556888999877777889999999886554432 24457889
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
..+|.++ +.-+|.-|+-.|.+|+. -++.+++. +...++-+......++.++-.+|.-|+-.
T Consensus 187 ~aLL~D~--deiVRaSaVEtL~~lA~-----~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 187 INLLHDG--DEIVRASAVEALVHLAT-----LNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp HGGGGCS--SHHHHHHHHHHHHHHHT-----SCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCc--chhhhHHHHHHHHHHHH-----cCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 9999987 56689999999999995 34444433 33345556666778888888888877653
No 101
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=90.61 E-value=0.95 Score=41.25 Aligned_cols=104 Identities=16% Similarity=0.236 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCC-h
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNN-P 194 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNN-p 194 (390)
++.+|-.......|...+.+..+.++.....+.+-..+|.. -|++.++.++-.|..+|-++++|. +
T Consensus 9 ~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~k-------------rl~~~n~~~~l~aL~Lle~~vkNcG~ 75 (220)
T 1dvp_A 9 NLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKK-------------KMNSPNPHSSCYSLLVLESIVKNCGA 75 (220)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHH-------------HHTCSSHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHH-------------HHcCCCHHHHHHHHHHHHHHHhccCH
Confidence 34444444333456777777777777665555544444322 247889999999999999999995 6
Q ss_pred HHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHh
Q 016423 195 LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLI 232 (390)
Q Consensus 195 ~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLi 232 (390)
..+..+.....+..|++++.+. +..|+.|++.-|-.-.
T Consensus 76 ~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 76 PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 6888888888889999988754 4678888876665544
No 102
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.44 E-value=7.1 Score=43.25 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=78.2
Q ss_pred CCChHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHH
Q 016423 173 HPDTDIRKISAWILGKASQN--NPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 249 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QN--Np~~Q~~~le~g~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~ 249 (390)
+.++-+|..|+.++|.+.-. |+. +++.|+..+.++ +..+|..|+.||+-+.-+.+.. ++
T Consensus 553 ~~dp~vRygaa~alglAyaGTGn~~---------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~---------v~ 614 (963)
T 4ady_A 553 SDESLLRYGGAFTIALAYAGTGNNS---------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT---------VP 614 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSCCHH---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS---------HH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH---------HH
Confidence 45666666666666544332 221 355566655433 4678888888888775555432 22
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q 016423 250 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 326 (390)
Q Consensus 250 ~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~ 326 (390)
-++..|... .++-+|+-|++++.-++. +++ ...++..|..+++..|..|+..|+.+|+.+....
T Consensus 615 rlv~~L~~~-~d~~VR~gAalALGli~a-----Gn~-------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 615 RIVQLLSKS-HNAHVRCGTAFALGIACA-----GKG-------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HHTTTGGGC-SCHHHHHHHHHHHHHHTS-----SSC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhcc-----CCC-------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 333444332 267789999999988763 222 1345667777778789999999999999888643
No 103
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=89.94 E-value=0.31 Score=49.92 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=61.1
Q ss_pred CcHHHHHHhhcCC----------CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHH
Q 016423 204 GALSKLMKMVKSS----------FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 273 (390)
Q Consensus 204 g~l~~Ll~LL~s~----------~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs 273 (390)
..+..|+++|+++ ++.+..=|++=|+.++|++|.+.....+.||=..++.++.++ |..+|..|+.++.
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~--d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS--DSRVKYEALKATQ 472 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC--CHHHHHHHHHHHH
Confidence 3578899999742 234566788999999999999999999999999999999987 6779999999998
Q ss_pred HHhh
Q 016423 274 DLAK 277 (390)
Q Consensus 274 ~L~~ 277 (390)
-++.
T Consensus 473 klm~ 476 (480)
T 1ho8_A 473 AIIG 476 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 104
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=89.85 E-value=2.2 Score=46.64 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc------CCCHHHHHHHHHHHHHHhhCC---c-c--------
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK------SSFVEEAVKALYTVSSLIRNN---L-A-------- 237 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~------s~~~~vr~kAL~ALSsLiR~~---~-~-------- 237 (390)
..+|..|..+|..++...+ +.++.. .++.+...+. +.+-..|..|++|++++..+. . +
T Consensus 375 ~s~R~aa~~~L~~l~~~~~---~~v~~~-~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE---VLVTNI-FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH---HHHHHH-HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred cCcHHHHHHHHHHHHHHcc---hhHHHH-HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 4689999999999998875 222211 2344444444 223346788999999997542 1 1
Q ss_pred chHHHHHcCcHHHHHHHhcCCC-hhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHH
Q 016423 238 GQEMFYVEAGDLMLQDILGNSS-FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 316 (390)
Q Consensus 238 a~~~f~~~gGl~~L~~lL~s~~-~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL 316 (390)
....|.. ..+...|.++. ..+.+|..|+|+++.++.. - .+.. -..+++.++..|.+++..++..|.
T Consensus 451 ~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~----~----~~~~-l~~~l~~l~~~L~d~~~~V~~~A~ 517 (960)
T 1wa5_C 451 NVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ----L----TKAQ-LIELMPILATFLQTDEYVVYTYAA 517 (960)
T ss_dssp CHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG----S----CHHH-HHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred cHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhh----C----CHHH-HHHHHHHHHHHhCCCChhHHHHHH
Confidence 1222221 12333344431 2678999999999999841 1 1121 345677888888888899999999
Q ss_pred HHHHHHHhc
Q 016423 317 AAIKNLLQL 325 (390)
Q Consensus 317 ~aL~~L~~~ 325 (390)
.||.++...
T Consensus 518 ~Al~~~~~~ 526 (960)
T 1wa5_C 518 ITIEKILTI 526 (960)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999999874
No 105
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.73 E-value=1.8 Score=47.06 Aligned_cols=123 Identities=10% Similarity=0.101 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHhhccccccc-----------ccCC--CCChHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHH
Q 016423 146 SLEDSQRALQELLILVEPIDNAN-----------GQLN--HPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKL 209 (390)
Q Consensus 146 s~e~~~~aLd~Le~lve~IDnAn-----------~lL~--s~~~~vR~~Aa~vLgta~QN---Np~~Q~~~le~g~l~~L 209 (390)
.-.+++.++--|.-+.+.++... ..|. .+++.||..|+|+||..+.- +| + ++. .+++.|
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~---~-~l~-~vl~~l 551 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP---A-YIP-PAINLL 551 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CHH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH---H-HHH-HHHHHH
Confidence 44577777777777766654321 1223 24889999999999988642 22 1 111 356777
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 210 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 210 l~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+..++ +.|+..|.+|+..+++.......-+. ..-+..|..++..+..+.+.+..+...+..++.
T Consensus 552 ~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 552 VRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 77773 46899999999999987654433222 234556667777643356677788888888874
No 106
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.54 E-value=1.9 Score=46.86 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=83.0
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhh---c--CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---K--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL---~--s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
++-..+..|..++|.++..-+... ...++.++.++ . +..+.+|..++|+|+.+........+.+ ..-+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 455689999999999987644322 13345444443 3 2256789999999998876433211111 1234
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhc
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~ 325 (390)
+.|...|. ++++..|+.++.+|+.. ......+.+ ..++..+..++..+ +.+.++.++.++..++..
T Consensus 549 ~~l~~~l~-----~~v~~~A~~al~~l~~~----~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 549 NLLVRGLN-----SSMSAQATLGLKELCRD----CQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHH-----SSCHHHHHHHHHHHHHH----CHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-----hHHHHHHHHHHHHHHHH----HHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 55666662 34799999999999952 111111111 35666666777763 678999999999999874
No 107
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=88.48 E-value=2.8 Score=46.24 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=83.1
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCC----CHH-HHHHHHHHHHHHhhCCccchHHHHHcCcH
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FVE-EAVKALYTVSSLIRNNLAGQEMFYVEAGD 248 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~----~~~-vr~kAL~ALSsLiR~~~~a~~~f~~~gGl 248 (390)
.+-..+..|++++|.++.........-+-..+++.|+.+.... +.. ++..++|+++...+...... .+. ..-+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l-~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL-RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHH-HHHH
Confidence 5667899999999999765433322111122455555543321 122 34468888887655422221 222 2345
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhh---hhcCCC-CCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---LENMHK-VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~---l~~~~~-~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+.|...+.++ +.+++..|+.++..|+... +....+ +..+.+ ..++..+..++...+.+-......+++.++.
T Consensus 543 ~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6667777765 6789999999999999631 000000 001111 2344445555555555666777888888876
Q ss_pred cC
Q 016423 325 LR 326 (390)
Q Consensus 325 ~~ 326 (390)
..
T Consensus 619 ~~ 620 (1049)
T 3m1i_C 619 EE 620 (1049)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=88.07 E-value=15 Score=35.95 Aligned_cols=147 Identities=15% Similarity=0.124 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC---cHHHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLML 251 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g---Gl~~L 251 (390)
++++--.+-.+|-.|+.. +.+-..++..+.+-.+.+.+..++=++..-|...+-.++..|+.....|...+ -+...
T Consensus 136 ~~diAl~~G~mLRecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y 214 (341)
T 1upk_A 136 SPEIALNCGIMLRECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY 214 (341)
T ss_dssp STTTHHHHHHHHHHHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred cchhHhHHHHHHHHHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHH
Confidence 344444555566666554 45666677888888999999887778888899899988888888777887766 34566
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCC-chhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 252 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 252 ~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
..+|.++ +-=.|+.++-||+.|+.. ..+... ...+.+..-++.++.+|++....+|-.|-+...-++..+.
T Consensus 215 ~~Ll~S~--NYVTkRQSlKLLgelLld---r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 215 EKLLHSE--NYVTKRQSLKLLGELLLD---RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHTTCS--SHHHHHHHHHHHHHHHHS---GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhcCC--cchhHHHHHHHHHHHHhC---chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 6778887 455899999999999952 223222 3345567889999999999999999999999999998643
No 109
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.64 E-value=7.4 Score=43.45 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=70.0
Q ss_pred ccCCCCHHHHH----------HhHHHHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcc----ccc
Q 016423 101 DVQRLSPSELK----------KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP----IDN 166 (390)
Q Consensus 101 ~~~~~s~e~l~----------~r~~~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~----IDn 166 (390)
-.+.++.++|. +-|.|+-+|+-..|.+.-...|++. +.+...+..+-..+|--+..++.+ ++.
T Consensus 319 ~lR~~~~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~---i~~~~l~~~ea~~~l~~~~~~~~Pt~e~l~~ 395 (1056)
T 1lsh_A 319 FLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRT---LASEQLTSAEATQIVASTLSNQQATRESLSY 395 (1056)
T ss_dssp HHTTSCHHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHhhccCCCCHHHHHH
Confidence 34566766532 1346888888877765444555554 566677766644444333332222 111
Q ss_pred ccccCCC----CChHHHHHHHHHHHHHhh----CChHHHHHHHhcCcHHHHHH----hhcCCCHHHHHHHHHHHHHHhhC
Q 016423 167 ANGQLNH----PDTDIRKISAWILGKASQ----NNPLVQKQVLELGALSKLMK----MVKSSFVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 167 An~lL~s----~~~~vR~~Aa~vLgta~Q----NNp~~Q~~~le~g~l~~Ll~----LL~s~~~~vr~kAL~ALSsLiR~ 234 (390)
.-.++.+ .++.+|..|.-++|+++. +++.|.. ..++++.. .+...+...+.-+|-||+|+ +
T Consensus 396 ~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~--g 468 (1056)
T 1lsh_A 396 ARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA--G 468 (1056)
T ss_dssp HHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--T
T ss_pred HHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc--C
Confidence 1144444 466788877777777754 3332211 12333333 33444455567778888887 3
Q ss_pred CccchHHH
Q 016423 235 NLAGQEMF 242 (390)
Q Consensus 235 ~~~a~~~f 242 (390)
+|.....+
T Consensus 469 ~p~~l~~l 476 (1056)
T 1lsh_A 469 QPNSIKKI 476 (1056)
T ss_dssp CGGGHHHH
T ss_pred ChhHHHHH
Confidence 45444433
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=87.05 E-value=0.18 Score=47.10 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHH
Q 016423 145 LSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKA 224 (390)
Q Consensus 145 ~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kA 224 (390)
.+.+.+..+...+ ..+--..+++++++.||..|+..++ .+.|..++++++..||..+
T Consensus 62 ~~~~VR~~AA~~l-----~~~~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll~D~d~~VR~~a 118 (244)
T 1lrv_A 62 PFWERRAIAVRYS-----PVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITV 118 (244)
T ss_dssp SSHHHHHHHHTTS-----CGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHH
T ss_pred CCHHHHHHHHHhC-----CHHHHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHHcCCCHHHHHHH
Confidence 3566666665543 1111126778899999998886431 1345555555555666555
Q ss_pred HHH
Q 016423 225 LYT 227 (390)
Q Consensus 225 L~A 227 (390)
...
T Consensus 119 A~~ 121 (244)
T 1lrv_A 119 ADR 121 (244)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 111
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=86.62 E-value=18 Score=33.05 Aligned_cols=142 Identities=13% Similarity=0.028 Sum_probs=91.8
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHH--HHH-hcC-cHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc--hH-HH
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQK--QVL-ELG-ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG--QE-MF 242 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~--~~l-e~g-~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a--~~-~f 242 (390)
-|.|.+=..|..|..-|..+.++++.... ..+ ..+ ..+.+-+.+.+.+..+..+++.+|..++...... .. .+
T Consensus 17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred hcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 46788889999999999999988765432 222 233 3445556777777889999999999999875432 11 12
Q ss_pred H--HcCcHHHHHH-HhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHH
Q 016423 243 Y--VEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 319 (390)
Q Consensus 243 ~--~~gGl~~L~~-lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL 319 (390)
. ...-++.|+. +|.+. ..+++.++..++..++.. .... ..+++.+...+.+.++.++..++..|
T Consensus 97 ~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~------~~~~-----~~~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGL------DTSI-----TQSVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHT------SSSS-----HHHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHh------cCcH-----HHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 1 1223454553 46665 466788888888877731 1111 12346667778888999999999888
Q ss_pred HHHHh
Q 016423 320 KNLLQ 324 (390)
Q Consensus 320 ~~L~~ 324 (390)
..++.
T Consensus 164 ~~~l~ 168 (278)
T 4ffb_C 164 YELMA 168 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
No 112
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=86.17 E-value=12 Score=35.18 Aligned_cols=141 Identities=14% Similarity=0.029 Sum_probs=91.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CccchHHHHHc
Q 016423 169 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN---NLAGQEMFYVE 245 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~---~~~a~~~f~~~ 245 (390)
..|.+.+-.-+..|+..|......+|..-...++. .++-+.--+.+.+..+..+++-.|..++.. ..+........
T Consensus 53 ~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 53 SQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 35666788889999999999988887543332221 122111123355777888888888887421 11111111112
Q ss_pred CcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 246 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 246 gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
--++.|+.=+.++ ..++|.++-.++..|..- .--..+.+.+++-+.+.+...++.++..+.++..
T Consensus 132 ~~lP~LveKlGd~--k~~vR~~~r~il~~l~~v------------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 132 AFVPYLLLKTGEA--KDNMRTSVRDIVNVLSDV------------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp HHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHH------------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHH------------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 2468888888876 456788888777766631 1124577778888899999999999999999885
No 113
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.13 E-value=6.2 Score=43.71 Aligned_cols=88 Identities=9% Similarity=0.103 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHH
Q 016423 172 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 250 (390)
Q Consensus 172 ~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~ 250 (390)
++.++.||..|+-.||-+...+| ..++.++.+|. +.++.+|..|.+|++-++-+++. ... +..
T Consensus 588 ~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~a------id~ 651 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSA------IDV 651 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHH------HHH
T ss_pred cCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHH------HHH
Confidence 45678899999999999877765 35778887664 45678999999999999877664 222 347
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
|..++.++ +..+|..|++.|.-+..
T Consensus 652 L~~L~~D~--d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 652 LDPLTKDP--VDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHTCS--SHHHHHHHHHHHHHHST
T ss_pred HHHHccCC--CHHHHHHHHHHHHHHhc
Confidence 77777765 66789999999998875
No 114
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=84.91 E-value=22 Score=34.96 Aligned_cols=131 Identities=16% Similarity=0.057 Sum_probs=91.6
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc-cc-hHHHH------
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY------ 243 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~-~a-~~~f~------ 243 (390)
..+..+......||.++ -||..--+.++.+ .++..|...+.+....++.-|+--|+.+|--.. .+ ...+.
T Consensus 131 ~~d~~~q~~~l~CLkal-mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~ 209 (383)
T 3eg5_B 131 NYDSRNQHEIIRCLKAF-MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 209 (383)
T ss_dssp --CHHHHHHHHHHHHHH-TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH-hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHH
Confidence 34567888899999988 5666666667776 689999999998888888888888888876543 22 22221
Q ss_pred ----HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC------CchhhhhcCchHHHHHhhcCCChh
Q 016423 244 ----VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV------EPPLFRDRFFLKSVVDLTASADLD 310 (390)
Q Consensus 244 ----~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~------~~~~l~~~g~v~~Lv~lL~~~d~~ 310 (390)
+..-+..++..|.+. .+..++..+..+|..++. ..++ .+..+...|+.+.+-.+=...+.+
T Consensus 210 ~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lIN~li~-----~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~ 280 (383)
T 3eg5_B 210 AEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALIT-----PAEELDFRVHIRSELMRLGLHQVLQELREIENED 280 (383)
T ss_dssp HHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHH
T ss_pred HHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChh
Confidence 123478888888864 367889999999999985 3332 345567888888777643333433
No 115
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=84.65 E-value=2.8 Score=36.23 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccccccCC-CCChHHHHHHHHHHHHHhhC-C
Q 016423 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANGQLN-HPDTDIRKISAWILGKASQN-N 193 (390)
Q Consensus 116 ~L~eal~~~~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn~lL~-s~~~~vR~~Aa~vLgta~QN-N 193 (390)
++.+|-+......|...+.+..+.++.....+.+-..++.. -|. ++++.+.-.|..+|-++++| .
T Consensus 20 ~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~K-------------Rl~~~~n~~~~l~AL~LLe~cvkNCG 86 (152)
T 3rru_A 20 LIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKK-------------RISKNYNHKEIQLTLSLIDMCVQNCG 86 (152)
T ss_dssp HHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHH-------------HHTTCCBHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHH-------------HHcCCCChHHHHHHHHHHHHHHHhcC
Confidence 44555444334467788888888888765545444444332 123 46788888899999999999 6
Q ss_pred hHHHHHHHhcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhhCCcc
Q 016423 194 PLVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNNLA 237 (390)
Q Consensus 194 p~~Q~~~le~g~l~~-Ll~LL~s~---~~~vr~kAL~ALSsLiR~~~~ 237 (390)
+.++..+.....+.. |+++++.. +..|+.|++..|-+-...|+.
T Consensus 87 ~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 87 PSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp HHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 667887777777764 77887643 357999999988888766643
No 116
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=84.47 E-value=6.3 Score=42.53 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHhhcccccc--c---------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhh
Q 016423 145 LSLEDSQRALQELLILVEPIDNA--N---------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 213 (390)
Q Consensus 145 ~s~e~~~~aLd~Le~lve~IDnA--n---------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL 213 (390)
.+-..++.++--+.-+.+.++.. . ..|.++++.||..++|+||..+.--.... .++. .+++.|+..+
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~vl~~l~~~l 538 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SVLPLVLHAL 538 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TTHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HHHHHHHHHh
Confidence 45667777777777666655421 1 12344688899999999998864311111 2332 6899999988
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 016423 214 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 276 (390)
Q Consensus 214 ~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~ 276 (390)
.+ +.|+..|.+|+..+++..+....-+. ..-+..|..++..+..+.+.+..+.-.+..++
T Consensus 539 ~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 539 GN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp TC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 65 57899999999999987654322111 12233444444432223345555555555555
No 117
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=84.10 E-value=4.6 Score=39.02 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=63.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCccchHHHHHcC--cH----HHHHHHhcCC--ChhHHHHHHHHHHHHHHhhhhhhcCCC
Q 016423 214 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--GD----LMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHK 285 (390)
Q Consensus 214 ~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~g--Gl----~~L~~lL~s~--~~d~klr~KA~~LLs~L~~~~l~~~~~ 285 (390)
.+.+.+++.+|...|++.+||||++.+.+...- -+ +-|...+..+ ..+ .++.+-+.+|.-|+. ...
T Consensus 80 ~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~-~l~KR~LsII~~L~~-----~~~ 153 (315)
T 3qml_C 80 ENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSN-ILIKRYLSILNELPV-----TSE 153 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCH-HHHHHHHHHHHHSCC-----CST
T ss_pred ccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHHHhc-----ChH
Confidence 334567899999999999999999988665432 11 2233333221 123 466677788888874 122
Q ss_pred CCchhhhhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHH
Q 016423 286 VEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLL 323 (390)
Q Consensus 286 ~~~~~l~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~ 323 (390)
++ . ..-+..|..++... +.+++.+++..+.-+.
T Consensus 154 ~F----~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 154 DL----P-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hh----h-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 22 1 22336666666666 9999999999888776
No 118
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=83.83 E-value=2.4 Score=35.91 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHH
Q 016423 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 302 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 302 (390)
..+-.|+-+|+..+.+... .+..|..-|.+. ++.++..|+.+|-.++. +.++.+...+.+..++..++.
T Consensus 24 ~~ileicD~I~~~~~~~k~-----a~rai~Krl~~~--n~~~ql~AL~LLe~~vk----NcG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKD-----CLRSIMRRVNHK--DPHVAMQALTLLGACVS----NCGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----hcCHHHHHHHhhHHHHHHHHH
Confidence 4566788888887654333 345677777776 56789999999988886 445555666667788888888
Q ss_pred hhcCCChhHHHHHHHHHHHHHh
Q 016423 303 LTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 303 lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+++..+..|+++++..+.+...
T Consensus 93 l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 93 VLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHH
Confidence 8877899999999988877664
No 119
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.79 E-value=10 Score=38.92 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhh
Q 016423 114 QMEIKELMEKLKTPSDAQLIQIAIDDLN-N-STLSLEDSQRALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQ 191 (390)
Q Consensus 114 ~~~L~eal~~~~~~~d~~~Mk~~l~~l~-~-~~~s~e~~~~aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~Q 191 (390)
.+..++.|+..++. ..+|+....+- . -..=++-...|++.+.+|||+ ++..||.+|..-|..+|.
T Consensus 28 ~~~y~~Il~~~kg~---~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcED----------ed~~IR~qaik~Lp~~ck 94 (507)
T 3u0r_A 28 KDAYQVILDGVKGG---TKEKRLAAQFIPKFFKHFPELADSAINAQLDLCED----------EDVSIRRQAIKELPQFAT 94 (507)
T ss_dssp HHHHHHHHHGGGSC---HHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTC----------SSHHHHHHHHHHGGGGCC
T ss_pred HHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc----------ccHHHHHHHHHhhHHHhh
Confidence 44566677655452 33444333321 1 011245566788999999987 568899999999999988
Q ss_pred CChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHH
Q 016423 192 NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 271 (390)
Q Consensus 192 NNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~L 271 (390)
+ . .+- .+...|.+||.++........-.+|-++++.+|.+.-. .++.++..+ +..+|.|++.+
T Consensus 95 ~-~----~i~--kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~-------~lf~~i~~~---~e~~Rer~lkF 157 (507)
T 3u0r_A 95 G-E----NLP--RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLG-------GLFSQILQG---EDIVRERAIKF 157 (507)
T ss_dssp T-T----CHH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHH-------HHHHHHHHS---CHHHHHHHHHH
T ss_pred h-h----hhh--hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHH-------HHHHHHccc---chHHHHHHHHH
Confidence 7 1 122 25778999999988777777778888888877664211 123344444 34588888888
Q ss_pred HHHHhhhhhhcCCCCCchhhhhcCchHHHHHhh
Q 016423 272 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 304 (390)
Q Consensus 272 Ls~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 304 (390)
|..=+.. -.++....=.+.-++..+-.+|
T Consensus 158 i~~kl~~----l~~~~l~~E~E~~i~~~ikK~L 186 (507)
T 3u0r_A 158 LSTKLKT----LPDEVLTKEVEELILTESKKVL 186 (507)
T ss_dssp HHHHGGG----SCTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhh----cchhhccHHHHHHHHHHHHHHh
Confidence 8765532 2223333333444555555555
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=83.26 E-value=14 Score=33.59 Aligned_cols=101 Identities=19% Similarity=0.105 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc-cc-hHHHH--------
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY-------- 243 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~-~a-~~~f~-------- 243 (390)
+..+......||.++ -||..--+.++.. +++..|...|.+....++.-++--|+.+|--.. .+ ...+.
T Consensus 67 ~~~~~~~~l~CLkal-mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAF-MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHH-TSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-hCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 456788899999888 5666666666665 688999999988888888888777777776543 24 33222
Q ss_pred --HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 244 --VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 244 --~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
+..=+..+++.|.+. .+..++..+..+|..|+.
T Consensus 146 ~~e~~RF~~lv~~l~~~-~~~e~~~~~m~lIN~li~ 180 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSG-TSIALKVGCLQLINALIT 180 (233)
T ss_dssp HHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHT
T ss_pred hCCcchHHHHHHHHhcC-ChHHHHHHHHHHHHHHHC
Confidence 112356677777644 366778888888888874
No 121
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=81.66 E-value=23 Score=34.79 Aligned_cols=131 Identities=16% Similarity=0.073 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCc-cc-hHHHH--------
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY-------- 243 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~-~a-~~~f~-------- 243 (390)
+..+...+..||.++ -||..--+.++.+ +++..|...|.+....++..++--|+.+|-... .+ ...+.
T Consensus 71 d~~~~~~~l~CLkal-mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAF-MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHH-TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 456788899999888 5555555566666 789999999988888888878777777765443 23 22221
Q ss_pred --HcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCC------CchhhhhcCchHHHHHhhcCCChhHH
Q 016423 244 --VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV------EPPLFRDRFFLKSVVDLTASADLDLQ 312 (390)
Q Consensus 244 --~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~------~~~~l~~~g~v~~Lv~lL~~~d~~v~ 312 (390)
+..=+..|+..|.+. .+..++..+..+|..|+. ..++ .+..|...|+.+.+-.+=...+.++.
T Consensus 150 ~~e~~RF~~lv~~l~~~-~~~e~~~a~m~lIN~lv~-----~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSG-TSIALKVGCLQLINALIT-----PAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 220 (386)
T ss_dssp HHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred hCchhhHHHHHHHHHcC-ChHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHH
Confidence 222466788888754 367799999999999995 3332 35567888988888766554454443
No 122
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=81.48 E-value=20 Score=40.23 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhhcccccccccCCCCChHHHHHHHHHHHHHhhCCh-HHHHHHHhcCcHH
Q 016423 130 AQLIQIAIDDLNNSTLSLEDSQR-ALQELLILVEPIDNANGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALS 207 (390)
Q Consensus 130 ~~~Mk~~l~~l~~~~~s~e~~~~-aLd~Le~lve~IDnAn~lL~s~~~~vR~~Aa~vLgta~QNNp-~~Q~~~le~g~l~ 207 (390)
.+.||+++..+.+-. .++.+. .++.|... ++. ...+-..+.++||++|+++..-. ..-+.++ -.+++
T Consensus 456 y~~mrd~L~~lt~l~--~~~~~~i~~~~l~~~---~~~-----~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~ 524 (1073)
T 3gjx_A 456 YKNMRETLVYLTHLD--YVDTEIIMTKKLQNQ---VNG-----TEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIK 524 (1073)
T ss_dssp HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH---HTS-----CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH---hcC-----CCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHH
Confidence 357888876665322 222222 23333332 111 23457889999999999986633 2222222 23677
Q ss_pred HHHHhhcCCC---HH--HHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 208 KLMKMVKSSF---VE--EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 208 ~Ll~LL~s~~---~~--vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.|+.+..... .. ++...+|.+|...|.-.... .|. .--+..|...+.++ +..++.-||..+..++.
T Consensus 525 ~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~-~~L-~~vl~~L~~~m~~~--~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 525 DLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW-KFL-KTVVNKLFEFMHET--HDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH-HHHHHHHHHHTTCC--STTHHHHHHHHHHHHHH
T ss_pred HHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH-HHH-HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Confidence 7777765431 12 34455688888665421111 122 12344555666654 45689999999999986
No 123
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=81.26 E-value=4.3 Score=34.92 Aligned_cols=109 Identities=10% Similarity=0.124 Sum_probs=77.7
Q ss_pred cHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 205 ALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
.+..+|.-..+++. +.--..+-.|+-+|+..+.+... .+..|..-|.+. ++.++..|+.+|-.++. +.
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~-----a~ral~krl~~~--n~~v~l~AL~LLe~cvk----NC 79 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPL-----ATRLLAHKIQSP--QEWEAIQALTVLETCMK----SC 79 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HC
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hc
Confidence 35555555555431 11234666788888887654333 244677777765 67889999999999986 45
Q ss_pred CCCCchhhhhcCchHHHHHhhcC------CChhHHHHHHHHHHHHHh
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~~v~EkAL~aL~~L~~ 324 (390)
.+.+...+.+..|+..|+.++.. .+..|+++++..+..-..
T Consensus 80 G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 80 GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 66666777888899999999963 578999999988888764
No 124
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=79.80 E-value=7.4 Score=33.26 Aligned_cols=90 Identities=8% Similarity=0.087 Sum_probs=67.8
Q ss_pred HHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHh
Q 016423 224 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 303 (390)
Q Consensus 224 AL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 303 (390)
..-.|+-+|+..+.+... .+..|..-|++. ++.++..|+.+|-.++. +.++.+...+.+..++..|+.+
T Consensus 21 ~~leicD~I~~~~~~~k~-----a~rai~krl~~~--n~~vql~AL~LLe~~vk----NCG~~fh~evas~~Fl~eL~kl 89 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPTH-----APWLLAHKIQSP--QEKEALYALTVLEMCMN----HCGEKFHSEVAKFRFLNELIKV 89 (148)
T ss_dssp HHHHHHHHHHHSSHHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCHHHHHHHTSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCccHHH-----HHHHHHHHhcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHhhHHHHHHHHHH
Confidence 344677788776543222 245677777766 67889999999999986 4566677778888999999999
Q ss_pred hcC------CChhHHHHHHHHHHHHHh
Q 016423 304 TAS------ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 304 L~~------~d~~v~EkAL~aL~~L~~ 324 (390)
+.. .+..|+++++..+..-..
T Consensus 90 ~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 90 LSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp TCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 874 478999999988887664
No 125
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=79.80 E-value=22 Score=39.57 Aligned_cols=90 Identities=9% Similarity=0.024 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhCC---hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCcc-chHHHHHcCcHHHHHHHh
Q 016423 180 KISAWILGKASQNN---PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDIL 255 (390)
Q Consensus 180 ~~Aa~vLgta~QNN---p~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~-a~~~f~~~gGl~~L~~lL 255 (390)
+.|+.+++.+++.. +...-.++ +.+|.++..+.+....||..|-+|+-+++...++ +.. .-++.|...|
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~ 142 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAI 142 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHh
Confidence 99999999999554 22323333 5799999999887788999999999999998666 432 2368888888
Q ss_pred cCCChhHHHHHHHHHHHHHHhh
Q 016423 256 GNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 256 ~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.+.. .=..+.-|+.+|..|+.
T Consensus 143 ~~~~-kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 143 VETN-KWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHCC-CHHHHHHHHHHHHHHHH
T ss_pred cccc-chHHHHHHHHHHHHHHH
Confidence 6431 34467778888888884
No 126
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=78.41 E-value=3.6 Score=45.87 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=74.0
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCC-ChhHHHH--HHHHHHHHHHhhhhh
Q 016423 206 LSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-SFEIRLH--RKAVSLVGDLAKCQL 280 (390)
Q Consensus 206 l~~Ll~LL~s~--~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~-~~d~klr--~KA~~LLs~L~~~~l 280 (390)
++.|-..+..+ +=..+..++||++++..+-.+....-.-...++.|..++... ..+.+.+ .-++|+|+..+.- +
T Consensus 453 ~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w-l 531 (1023)
T 4hat_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF-L 531 (1023)
T ss_dssp HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH-H
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH-H
Confidence 44555555543 235688999999999877555433333356677788877531 1234444 3466888776642 1
Q ss_pred hcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcChhHHHHHH
Q 016423 281 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 334 (390)
Q Consensus 281 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~~~r~~~~ 334 (390)
..+++.. ..++..+...+..++..+++.|..|+..|.+ +|+..+.
T Consensus 532 -~~~~~~L-----~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~ 576 (1023)
T 4hat_C 532 -KAHWNFL-----RTVILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFV 576 (1023)
T ss_dssp -HHCHHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHH
T ss_pred -hccHHHH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 1122211 2445556666666778899999999999997 5777664
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=78.40 E-value=4.8 Score=35.00 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHH
Q 016423 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 302 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 302 (390)
..+-.|+-+|+..+.+.... +..|..-|.+. ++.++..|+.+|-.++. +..+.+...+.+..++..++.
T Consensus 34 ~~~leicD~I~~~~~~~keA-----~ral~krl~~~--n~~vql~AL~LLd~~vk----NcG~~Fh~evas~~Fl~el~~ 102 (163)
T 1x5b_A 34 SLIMDICDKVGSTPNGAKDC-----LKAIMKRVNHK--VPHVALQALTLLGACVA----NCGKIFHLEVCSRDFATEVRA 102 (163)
T ss_dssp HHHHHHHHHHHHSSSHHHHH-----HHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HTCHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHH-----HHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HhhHHHHHHHhhHHHHHHHHH
Confidence 34456788888766443332 34677777766 56789999999999986 445666667777888888888
Q ss_pred hhcC-CChhHHHHHHHHHHHHHh
Q 016423 303 LTAS-ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 303 lL~~-~d~~v~EkAL~aL~~L~~ 324 (390)
++.. .+..|+++++..+..-..
T Consensus 103 l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 103 VIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHH
Confidence 8876 588999999987776553
No 128
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=78.19 E-value=17 Score=41.11 Aligned_cols=102 Identities=11% Similarity=-0.016 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc----ccC-CCCChHHHHHHHHHHHHHhhCC----hHHHHHHHhc
Q 016423 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN----GQL-NHPDTDIRKISAWILGKASQNN----PLVQKQVLEL 203 (390)
Q Consensus 133 Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn----~lL-~s~~~~vR~~Aa~vLgta~QNN----p~~Q~~~le~ 203 (390)
+.++++.+.++..+.+.|..|-+.|+.+-++-|... .+. .+.++.+|..|+.++-+.++.+ |.-+...++.
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~ 92 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN 92 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 556666667776677778888777777655554332 344 5678899999999999998652 3344455555
Q ss_pred CcHHHHHHhhcC---CCHHHHHHHHHHHHHHhhC
Q 016423 204 GALSKLMKMVKS---SFVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 204 g~l~~Ll~LL~s---~~~~vr~kAL~ALSsLiR~ 234 (390)
..++.+...... .+..++.|...+|+.+++.
T Consensus 93 ~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~ 126 (1204)
T 3a6p_A 93 SVMELIANGTLNILEEENHIKDALSRIVVEMIKR 126 (1204)
T ss_dssp HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHHH
Confidence 555555544221 3467899999999998876
No 129
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=77.58 E-value=46 Score=30.96 Aligned_cols=174 Identities=6% Similarity=0.059 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhhccccccc---------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCC
Q 016423 147 LEDSQRALQELLILVEPIDNAN---------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 217 (390)
Q Consensus 147 ~e~~~~aLd~Le~lve~IDnAn---------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~ 217 (390)
.++|...|....+++=.-|-+- .+-..++.+||...+..|+.++...+..-- .+++.|..|+.+++
T Consensus 29 ~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 29 PSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSC
T ss_pred cHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCC
Confidence 3577777766666543333222 333457889999999999999876654322 36788889998878
Q ss_pred HHHHHHHHHHHHHHhh-------CCccc----hHHHHHcCcH-HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhh-cC-
Q 016423 218 VEEAVKALYTVSSLIR-------NNLAG----QEMFYVEAGD-LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE-NM- 283 (390)
Q Consensus 218 ~~vr~kAL~ALSsLiR-------~~~~a----~~~f~~~gGl-~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~-~~- 283 (390)
..|..+++.+.+++-| .++.. .........+ ..+...+.+. +..+|..++-++..++.-|-. ..
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~--n~gvkl~~iKF~e~vIl~qT~~~~~ 181 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE--NDGIRTNAIKFLEGVVVLQSFADED 181 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS--CHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC--CcchHHHHHHHHHHHHHhhcCCCcc
Confidence 8888899888888632 22221 1222111221 3344445554 566788999888887743210 00
Q ss_pred ----------------CCCCc-hhh--hhcCchHHHHHhhcCC--ChhHHHHHHHHHHHHHhcCh
Q 016423 284 ----------------HKVEP-PLF--RDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 284 ----------------~~~~~-~~l--~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~~L~~~~~ 327 (390)
|+-.. ..+ .-.+++..|+..+.++ .......++++|..|+...+
T Consensus 182 ~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP 246 (257)
T 3gs3_A 182 SLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRP 246 (257)
T ss_dssp SCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred cCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCc
Confidence 01111 111 1246667777766655 33456677788888776443
No 130
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=77.33 E-value=59 Score=32.12 Aligned_cols=186 Identities=12% Similarity=0.104 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc--c-------ccCCCCChHHHHHHHHHHHHHhhCChHHHHHHH
Q 016423 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--N-------GQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 201 (390)
Q Consensus 131 ~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnA--n-------~lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~l 201 (390)
+++-+.+....... .++|+..|....+++=.-|-. . .+-..++.+||...+..|+.++...++.-
T Consensus 25 ~~v~~lln~A~~~~--~~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~---- 98 (386)
T 3o2t_A 25 ERVVDLLNQAALIT--NDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL---- 98 (386)
T ss_dssp HHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH----
T ss_pred HHHHHHHHhhhccC--hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34444444444322 246666666666653221211 1 23345789999999999999987654442
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCc--------H-------HHHHHHhcCCChhHHHHH
Q 016423 202 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------D-------LMLQDILGNSSFEIRLHR 266 (390)
Q Consensus 202 e~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG--------l-------~~L~~lL~s~~~d~klr~ 266 (390)
..+++.|..||.+++..|..+++.+.+++- |.........++ | ..+...+.+. +..+|.
T Consensus 99 -~~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~--n~GVrl 172 (386)
T 3o2t_A 99 -LKLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD--NDGIRT 172 (386)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS--SHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC--CcchHH
Confidence 236788888898878888888888888863 222222222222 2 2334445554 466788
Q ss_pred HHHHHHHHHhhhhhh-cCCCC--------------------Cc-hhh--hhcCchHHHHHhhcCC--ChhHHHHHHHHHH
Q 016423 267 KAVSLVGDLAKCQLE-NMHKV--------------------EP-PLF--RDRFFLKSVVDLTASA--DLDLQEKALAAIK 320 (390)
Q Consensus 267 KA~~LLs~L~~~~l~-~~~~~--------------------~~-~~l--~~~g~v~~Lv~lL~~~--d~~v~EkAL~aL~ 320 (390)
.++-++..++.-|-. ..++. +. ..+ .-.+++..|+..+..+ +......++++|.
T Consensus 173 ~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa 252 (386)
T 3o2t_A 173 HAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLA 252 (386)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHH
Confidence 999888887743310 00110 00 111 2357778888888764 4456667888888
Q ss_pred HHHhcChh
Q 016423 321 NLLQLRTT 328 (390)
Q Consensus 321 ~L~~~~~~ 328 (390)
.|+...+.
T Consensus 253 ~Iak~RP~ 260 (386)
T 3o2t_A 253 NIARQRPM 260 (386)
T ss_dssp HHHHHSGG
T ss_pred HHHHhcHH
Confidence 88875543
No 131
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=77.13 E-value=1 Score=41.85 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=10.3
Q ss_pred ccCCCCChHHHHHHHH
Q 016423 169 GQLNHPDTDIRKISAW 184 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~ 184 (390)
.+++.++..||..++.
T Consensus 105 ~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 105 ALMFDEDREVRITVAD 120 (244)
T ss_dssp GTTTCSCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 4566666777766665
No 132
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=76.62 E-value=55 Score=35.85 Aligned_cols=143 Identities=11% Similarity=0.049 Sum_probs=85.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc---ccC-CCCChHHHHHHHHHHHHHhhCC----hHH
Q 016423 125 KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN---GQL-NHPDTDIRKISAWILGKASQNN----PLV 196 (390)
Q Consensus 125 ~~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn---~lL-~s~~~~vR~~Aa~vLgta~QNN----p~~ 196 (390)
+.|.+.+.+.+++..+.++. .+.|..|-+.|+.+-.+-+--. .+| ++.++.+|..|+.+|-+.+..+ |.-
T Consensus 10 ~~~~~~~~l~~~l~~~~~p~--~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 10 SNDLDIALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp TSCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred CCcccHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence 44566677777777776664 3356666666666544443322 344 3568899999999999988652 233
Q ss_pred HHHHHhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhhC-CccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHH
Q 016423 197 QKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 270 (390)
Q Consensus 197 Q~~~le~g~l~~Ll~LL~s~-----~~~vr~kAL~ALSsLiR~-~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~ 270 (390)
+...++...++.+...-... +..++.|...+|+.+++. +|.. . .+-++-|...++. +...+..+..
T Consensus 88 ~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~-W----p~ll~~L~~~~~~---~~~~~~~~l~ 159 (1049)
T 3m1i_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-W----PEFIPELIGSSSS---SVNVCENNMI 159 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-C----TTHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCccc-c----hHHHHHHHHHHcc---ChHHHHHHHH
Confidence 44444444555554443221 246788999999998887 4421 1 1334555666653 2234455666
Q ss_pred HHHHHhh
Q 016423 271 LVGDLAK 277 (390)
Q Consensus 271 LLs~L~~ 277 (390)
+|..|..
T Consensus 160 ~L~~l~e 166 (1049)
T 3m1i_C 160 VLKLLSE 166 (1049)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666664
No 133
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=76.16 E-value=8.4 Score=33.73 Aligned_cols=109 Identities=11% Similarity=0.135 Sum_probs=76.6
Q ss_pred cHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcC
Q 016423 205 ALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 283 (390)
Q Consensus 205 ~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~ 283 (390)
.+..+|.-..++.. +.--..+-.|+-+|+..+.+... .+..|..-|++. ++.++..|+.+|-.++. +.
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~-----A~ral~krl~~~--n~~vql~AL~LLd~~vk----NC 81 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQI-----AVRLLAHKIQSP--QEWEALQALTVLEACMK----NC 81 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HS
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHH-----HHHHHHHHhcCC--CHHHHHHHHHHHHHHHH----Hc
Confidence 35555655555431 11224455788888887654333 245677778776 67789999999999986 34
Q ss_pred CCCCchhhhhcCchHHHHHhhcC------CChhHHHHHHHHHHHHHh
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~~v~EkAL~aL~~L~~ 324 (390)
.+.+...+.+..++..|+.++.. .+..|+++++..+..-..
T Consensus 82 G~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 82 GRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45566677788999999999863 378999999988887664
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.14 E-value=4.5 Score=37.02 Aligned_cols=110 Identities=14% Similarity=0.239 Sum_probs=75.7
Q ss_pred CcHHHHHHhhcCCCH-HHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhc
Q 016423 204 GALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 282 (390)
Q Consensus 204 g~l~~Ll~LL~s~~~-~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~ 282 (390)
+.+..+|.-..++.. +.--..+..|+-+|+..+.+... .+..|..-|.+. ++.++..|+.+|-.++. +
T Consensus 7 ~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~-----a~ral~krl~~~--n~~v~l~aL~LLe~~vk----N 75 (226)
T 3zyq_A 7 GTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKY-----AVNSIKKKVNDK--NPHVALYALEVMESVVK----N 75 (226)
T ss_dssp CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----H
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----h
Confidence 345566666665531 11234566788888876554333 245677777765 67789999999999986 3
Q ss_pred CCCCCchhhhhcCchHHHHHhhcC-CChhHHHHHHHHHHHHHh
Q 016423 283 MHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 283 ~~~~~~~~l~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~~L~~ 324 (390)
..+.+...+.+..++..|+.++.. .+..|+++++..|.....
T Consensus 76 cG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 76 CGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 455555666677777888888755 478999999988887764
No 135
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=74.82 E-value=15 Score=40.92 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=76.2
Q ss_pred cCCCCChHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCccchHHHHHcCc
Q 016423 170 QLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAG 247 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QN-Np~~Q~~~le~g~l~~Ll~LL~s~~-~~vr~kAL~ALSsLiR~~~~a~~~f~~~gG 247 (390)
.+......||.+|..++.+++++ ||..- ...+|.|+..+.+.. =..+..|+..|..++...| .+-...-..-
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~-~~~~~~~~~~ 176 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK-DQVALRMPEL 176 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH-HHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH-HHHHHhccch
Confidence 44567789999999999999888 66554 236899999997654 2568889999999998763 4444455678
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
++++.+++.+.+ ..++..|...+..+|.
T Consensus 177 ~p~~~~~~~d~k--~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 177 IPVLSETMWDTK--KEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHTTCSS--HHHHHHHHHHHHHHGG
T ss_pred hcchHhhcccCc--HHHHHHHHHHHHHHHh
Confidence 899999998764 5577778888888875
No 136
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=73.83 E-value=2.8 Score=44.23 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=78.2
Q ss_pred ccCC-CCChHHHHHHHHHHHHHhhCChHH-------------HHHHHhc-----------------CcHHHHHHhhcCCC
Q 016423 169 GQLN-HPDTDIRKISAWILGKASQNNPLV-------------QKQVLEL-----------------GALSKLMKMVKSSF 217 (390)
Q Consensus 169 ~lL~-s~~~~vR~~Aa~vLgta~QNNp~~-------------Q~~~le~-----------------g~l~~Ll~LL~s~~ 217 (390)
.+.+ ..-..||+.||++||.+ ..=|.- +.+-..+ ++++.++.-|.+.+
T Consensus 234 DYVSDqVVAPVRETaAQtLGaL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~D 312 (800)
T 3oc3_A 234 DFVDDRTVAPVRDAAAYLLSRI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPD 312 (800)
T ss_dssp BCSSSSCBCHHHHHHHHHHHHH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSS
T ss_pred ccccCeeeeehHHHHHHHHHHH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 3443 34468999999999998 553311 1111111 22344445555556
Q ss_pred HHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCch
Q 016423 218 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 297 (390)
Q Consensus 218 ~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v 297 (390)
+.||.-|..+|..++ .|.....+ +..+-++|.+-.+-.--......||+.|++. ... .-.....+
T Consensus 313 DDVRAVAAetLiPIA--~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~-----p~~---a~~dp~LV 377 (800)
T 3oc3_A 313 EDIKLLSAELLCHFP--ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRE-----NPE---LSIPPERL 377 (800)
T ss_dssp HHHHHHHHHHHTTSC--CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHH-----CTT---CCCCSGGG
T ss_pred cHHHHHHHHHhhhhc--chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcC-----Ccc---cccChHHH
Confidence 667766666666666 23222222 2233333321100000122455677777752 111 11223889
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHH
Q 016423 298 KSVVDLTASADLDLQEKALAAIKNLL 323 (390)
Q Consensus 298 ~~Lv~lL~~~d~~v~EkAL~aL~~L~ 323 (390)
+.|-.+|.++=..||..++++|.+++
T Consensus 378 PRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 378 KDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887
No 137
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=68.30 E-value=83 Score=29.83 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcC----cHHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCccchHHHHHc--CcH
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELG----ALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVE--AGD 248 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g----~l~~Ll~LL~s~-~~~vr~kAL~ALSsLiR~~~~a~~~f~~~--gGl 248 (390)
.+.+.-+..++-.++- +|.+-..+.+.+ .+..++..+.++ .+..+.-++..++|+..+.. +...+... .-+
T Consensus 116 ~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-g~~~l~~~~~~il 193 (304)
T 3ebb_A 116 EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-GQKLMMSQRESLM 193 (304)
T ss_dssp TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-HHHHHHHTHHHHH
T ss_pred HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-hHHHHHHHHHHHH
Confidence 3455566666665554 454544444332 223344445433 34557889999999987743 44444332 123
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC-CChhHHHHHHHHHHHHHhcCh
Q 016423 249 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 249 ~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~~v~EkAL~aL~~L~~~~~ 327 (390)
+.+..++.++ +..+|.-++.++.|++..... ..+. +. ..-++..+..++.. .|.+..-.+|.||++|+...+
T Consensus 194 ~~~~~~~~~~--nknl~iA~ATl~~NlAv~~~~--~~~~-~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~ 266 (304)
T 3ebb_A 194 SHAIELKSGS--NKNIHIALATLALNYSVCFHK--DHNI-EG--KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDS 266 (304)
T ss_dssp HHHHGGGSSC--CHHHHHHHHHHHHHHHHHHHH--SCCH-HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCC--ChhHHHHHHHHHHHHHHHHhh--cCCc-hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCh
Confidence 4444444443 566899999999999864221 1111 11 11144555555544 488999999999999997644
Q ss_pred hHHHHHHhhCCcHHHHHHH
Q 016423 328 TEALVLKDFCGLDTALERL 346 (390)
Q Consensus 328 ~~r~~~~~~~gL~~~L~~L 346 (390)
..++..+ .-+....++++
T Consensus 267 ~~~~lak-~l~~~~~v~~~ 284 (304)
T 3ebb_A 267 NAVQLAK-SLGVDSQIKKY 284 (304)
T ss_dssp HHHHHHH-HTTHHHHGGGG
T ss_pred hHHHHHH-HcCHHHHHHHH
Confidence 3333333 45555544443
No 138
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=68.26 E-value=42 Score=37.61 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc---ccCC-CCChHHHHHHHHHHHHHhhCC----hHHHH
Q 016423 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN---GQLN-HPDTDIRKISAWILGKASQNN----PLVQK 198 (390)
Q Consensus 127 ~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn---~lL~-s~~~~vR~~Aa~vLgta~QNN----p~~Q~ 198 (390)
+-|.+.+..++..+-++ +.+.|..|.+-|+.+-++-+--. .+|. +.++.+|..|+.+|-+.++.+ |..+.
T Consensus 24 ~~Dv~~Le~lv~~ly~p--~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~ 101 (1073)
T 3gjx_A 24 KLDINLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQC 101 (1073)
T ss_dssp CCSHHHHHHHHHTTTCS--SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred CCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHH
Confidence 34556666666666554 34566667666666555443222 4553 568899999999999999853 45566
Q ss_pred HHHhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhhC
Q 016423 199 QVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN 234 (390)
Q Consensus 199 ~~le~g~l~~Ll~LL~s~-----~~~vr~kAL~ALSsLiR~ 234 (390)
..++...+..+.+...++ +..++.|...+++.+++.
T Consensus 102 ~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~ 142 (1073)
T 3gjx_A 102 EGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 142 (1073)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence 666666677777664432 356778988999998875
No 139
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=67.78 E-value=65 Score=35.52 Aligned_cols=145 Identities=7% Similarity=0.009 Sum_probs=94.2
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchH--HHHHcCcHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE--MFYVEAGDLM 250 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~--~f~~~gGl~~ 250 (390)
+.++.++..+..||+.-+.--| ...+...+.++.++++|.. ++++..|+-+|..+++....... .++.. + -
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~--l-~ 276 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNI--L-N 276 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--H-H
T ss_pred cCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHH--H-h
Confidence 4678888999999999887543 2445566788899999875 67899999999999887554322 22221 1 1
Q ss_pred HHHHhc---CCChhHHHHHHHHHHHHHHhhhhhh-cCCCC-C----chhh--hhcCchHHHHHhhcCCChhHHHHHHHHH
Q 016423 251 LQDILG---NSSFEIRLHRKAVSLVGDLAKCQLE-NMHKV-E----PPLF--RDRFFLKSVVDLTASADLDLQEKALAAI 319 (390)
Q Consensus 251 L~~lL~---s~~~d~klr~KA~~LLs~L~~~~l~-~~~~~-~----~~~l--~~~g~v~~Lv~lL~~~d~~v~EkAL~aL 319 (390)
|...+. .+..|..+..+.+.++..+..+... ...+. . .... .-.++++.+..++.+++.++...++..+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 222232 1113666778888888777654311 11111 0 0011 1147899999999999889999998888
Q ss_pred HHHHh
Q 016423 320 KNLLQ 324 (390)
Q Consensus 320 ~~L~~ 324 (390)
..++.
T Consensus 357 ~~~l~ 361 (980)
T 3ibv_A 357 SDLLV 361 (980)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87775
No 140
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=62.30 E-value=46 Score=28.41 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=55.4
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCC------CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHh-cCCChhHHHHH
Q 016423 194 PLVQKQVLELGALSKLMKMVKSS------FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-GNSSFEIRLHR 266 (390)
Q Consensus 194 p~~Q~~~le~g~l~~Ll~LL~s~------~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL-~s~~~d~klr~ 266 (390)
...|..|++.|++..+-.-|..- +-.+|...+-+|+.+ |-..+.+... |+.-.+-.+ .++...+..|+
T Consensus 51 ~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~S-glGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 51 KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTS-GVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHH-CHHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcC-CCCcchhhhhcCCccCHHHHH
Confidence 44899999999998888887632 236788888887776 5445555544 555555555 46666777899
Q ss_pred HHHHHHHHHhh
Q 016423 267 KAVSLVGDLAK 277 (390)
Q Consensus 267 KA~~LLs~L~~ 277 (390)
.|-.++..-..
T Consensus 126 la~~Li~~WsR 136 (145)
T 2xpp_A 126 SAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 141
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.70 E-value=21 Score=32.14 Aligned_cols=90 Identities=7% Similarity=0.011 Sum_probs=64.0
Q ss_pred HHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHh
Q 016423 224 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 303 (390)
Q Consensus 224 AL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 303 (390)
.+-.|+-+|+..+.+.... +..|..-|+++ ++.++..|+.+|-.++. +..+.+...+.+..++..++.+
T Consensus 25 ~~leicd~i~~~~~~~k~a-----~r~l~krl~~~--n~~~~l~aL~Lle~~vk----NcG~~f~~eva~~~fl~~l~~l 93 (220)
T 1dvp_A 25 SILLICDEINQKDVTPKNA-----FAAIKKKMNSP--NPHSSCYSLLVLESIVK----NCGAPVHEEVFTKENCEMFSSF 93 (220)
T ss_dssp HHHHHHHHHHTTSSCHHHH-----HHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCcCHHHH-----HHHHHHHHcCC--CHHHHHHHHHHHHHHHh----ccCHHHHHHHHhHHHHHHHHHH
Confidence 3456888888766543332 34566667765 67789999999999996 3344455556667788888888
Q ss_pred hcC-CChhHHHHHHHHHHHHHh
Q 016423 304 TAS-ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 304 L~~-~d~~v~EkAL~aL~~L~~ 324 (390)
+.. .+..++++++..+..-..
T Consensus 94 ~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 94 LESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHH
Confidence 764 478999999988777664
No 142
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=58.50 E-value=29 Score=29.30 Aligned_cols=91 Identities=7% Similarity=0.072 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 173 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 173 s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
++-+.|...+.||+-+. ..-..+ +..+-+-+...+++-+.-+||-+-+++||...........+-.+.+.
T Consensus 22 nSk~~I~~LT~~a~~~~-----~~a~~I-----v~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~ 91 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENI-----SCAQYF-----VDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYK 91 (144)
T ss_dssp CCHHHHHHHHHHHHHTG-----GGHHHH-----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHH
T ss_pred ccHhHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 45566777777766543 222222 23333334445677788999999999999766666666677778887
Q ss_pred HHhcCCChhHHHHHHHHHHHHHH
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDL 275 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L 275 (390)
+....- +...|.|...++.-=
T Consensus 92 ~~~~~~--d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 92 RTYLLV--DNTTRTKLINMFKLW 112 (144)
T ss_dssp HHHHTS--CHHHHHHHHHHHHHH
T ss_pred HHHHhC--CHHHHHHHHHHHHHH
Confidence 877653 556777776666543
No 143
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=55.22 E-value=25 Score=30.08 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHH-HH
Q 016423 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-VV 301 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~-Lv 301 (390)
..+-.|+-+|+..+.+... .+..|..-|+++ .++.++..|+.+|-.++. +..+.+...+.+..++.. ++
T Consensus 35 ~~~leicD~I~~~~~~~k~-----a~ral~krl~~~-~n~~v~l~AL~LLd~~vk----NcG~~fh~eva~~~fl~e~Lv 104 (157)
T 1elk_A 35 ALNMEICDIINETEEGPKD-----ALRAVKKRIVGN-KNFHEVMLALTVLETCVK----NCGHRFHVLVASQDFVESVLV 104 (157)
T ss_dssp HHHHHHHHHHHHSSSHHHH-----HHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH----HSCHHHHHHHTSHHHHHHHTH
T ss_pred HHHHHHHHHHhCCCccHHH-----HHHHHHHHhccC-CCHHHHHHHHHHHHHHHH----HhCHHHHHHHhhHHHHHHHHH
Confidence 3345677788876544333 235677777642 267789999999999986 455666677778888888 78
Q ss_pred HhhcC---CChhHHHHHHHHHHHHHh
Q 016423 302 DLTAS---ADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 302 ~lL~~---~d~~v~EkAL~aL~~L~~ 324 (390)
.++.. ++..|+++++..+..-..
T Consensus 105 k~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 105 RTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 88843 356899999987777653
No 144
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=37.78 E-value=2.6e+02 Score=26.18 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=102.4
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHHhc-CcHHHHHHh-------hcCCC----HHHHH-HHHHHHHHHhhCCccchHH
Q 016423 175 DTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKM-------VKSSF----VEEAV-KALYTVSSLIRNNLAGQEM 241 (390)
Q Consensus 175 ~~~vR~~Aa~vLgta~QNNp~~Q~~~le~-g~l~~Ll~L-------L~s~~----~~vr~-kAL~ALSsLiR~~~~a~~~ 241 (390)
+++-|+.|..-|+.=--+.|..--.+-.. |.+..|++= ++.++ .+-|+ .|+.-+=|+. .||.....
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhH
Confidence 34458888877777655555555444444 656555442 22221 23354 3343344444 57999999
Q ss_pred HHHcCcHHHHHHHhcCC---ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHH
Q 016423 242 FYVEAGDLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 318 (390)
Q Consensus 242 f~~~gGl~~L~~lL~s~---~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~a 318 (390)
|..++-.-.|..+|... .+-..+|.-++..|..|+. ..+++....+.+.++++.....+...+.-.+.-|...
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK----~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfI 168 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVK----TDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFI 168 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGG----GCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhc----cCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999888888888643 2346789999999999996 3566778888999999999999999887788888888
Q ss_pred HHHHHhc
Q 016423 319 IKNLLQL 325 (390)
Q Consensus 319 L~~L~~~ 325 (390)
+..++.+
T Consensus 169 lqKIL~d 175 (268)
T 2fv2_A 169 LQKILLD 175 (268)
T ss_dssp HHHHHHS
T ss_pred HHHHhcc
Confidence 8887764
No 145
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=36.22 E-value=33 Score=29.11 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcC-chHHHH
Q 016423 223 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF-FLKSVV 301 (390)
Q Consensus 223 kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g-~v~~Lv 301 (390)
-.+.-|+.++++++... | .--..+|..-|.++ +..++.||+.+|.||+. ++.+.+...+.++- .|+.+.
T Consensus 30 ylm~EIA~~T~~s~~~~--~--~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~----~Gs~~f~~~~r~~~~~Ik~l~ 99 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSI--V--KEFSEFILKRLDNK--SPIVKQKALRLIKYAVG----KSGSEFRREMQRNSVAVRNLF 99 (140)
T ss_dssp HHHHHHHHHHHHSCHHH--H--HHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTT----TSCHHHHHHHHHTTHHHHTTT
T ss_pred HHHHHHHHHHHhcchhH--H--HHHHHHHHHHhcCC--CcceeehHHHHHHHHHH----hCCHHHHHHHHHhHHHHHHHH
Confidence 44556777777654321 1 12346777777776 46689999999999996 35555555554432 233333
Q ss_pred HhhcCCC--------hhHHHHHHHHHHHHHhc
Q 016423 302 DLTASAD--------LDLQEKALAAIKNLLQL 325 (390)
Q Consensus 302 ~lL~~~d--------~~v~EkAL~aL~~L~~~ 325 (390)
++=-.+| ..||++|=.++..|-..
T Consensus 100 ~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 100 HYKGHPDPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp TCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred hcCCCCCcccccchhHHHHHHHHHHHHHHhCc
Confidence 2222222 57888887777766653
No 146
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=35.46 E-value=2.9e+02 Score=26.00 Aligned_cols=188 Identities=13% Similarity=0.068 Sum_probs=99.8
Q ss_pred CCCHHHHHHhHHHHHHHHHHcC--CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccccc---------c----
Q 016423 104 RLSPSELKKRQMEIKELMEKLK--TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA---------N---- 168 (390)
Q Consensus 104 ~~s~e~l~~r~~~L~eal~~~~--~~~d~~~Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnA---------n---- 168 (390)
+++|+++. .-+.+-..+..-+ .++ ...+.-..+++ .-+.+.+.-+||-|+-.+-.-+-+ .
T Consensus 76 ~Ls~~el~-~L~~l~~~l~~~s~~~~~-~~~l~~l~kil---~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~ 150 (304)
T 3ebb_A 76 KLTEDDLI-LLEKILSLICNSSSEKPT-VQQLQILWKAI---NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSS 150 (304)
T ss_dssp CCCHHHHH-HHHHHHHHHHTTCSSCCC-HHHHHHHHHHH---TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHH
T ss_pred CcCHHHHH-HHHHHHHHHhccCCCccc-hHHHHHHHHHH---cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHH
Confidence 58888753 3333333333211 222 22233333333 345567777777777655322111 1
Q ss_pred ---ccCC-CCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHHhhcCCCHHHHHH---HHHHHHHHhhCCccch
Q 016423 169 ---GQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVK---ALYTVSSLIRNNLAGQ 239 (390)
Q Consensus 169 ---~lL~-s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~LL~s~~~~vr~k---AL~ALSsLiR~~~~a~ 239 (390)
..+. ...+..+..++.+++++..+. ..++.++.. .+++.+...+.+.+..++.. .++-+|....+... .
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~-~ 228 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN-I 228 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC-H
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC-c
Confidence 2333 244567999999999997774 466666653 34455555555556667653 34555555443222 1
Q ss_pred HHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcC
Q 016423 240 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 306 (390)
Q Consensus 240 ~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~ 306 (390)
+.- .--+..+..++... .+....-+++.+|.+|+. .+.+..+.....|+-..+-...+.
T Consensus 229 ~~~--~~ll~~l~~il~~~-~d~EalyR~LvALGtL~~-----~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 229 EGK--AQCLSLISTILEVV-QDLEATFRLLVALGTLIS-----DDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHH--HHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred hHH--HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHh-----CChhHHHHHHHcCHHHHHHHHHhC
Confidence 111 11344555666543 256678899999999984 333344444445555555455444
No 147
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=34.80 E-value=1.4e+02 Score=27.55 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=52.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHhh-----------------------CChHHHHHHHhc---CcHHHHHHhhcCC--CHHH
Q 016423 169 GQLNHPDTDIRKISAWILGKASQ-----------------------NNPLVQKQVLEL---GALSKLMKMVKSS--FVEE 220 (390)
Q Consensus 169 ~lL~s~~~~vR~~Aa~vLgta~Q-----------------------NNp~~Q~~~le~---g~l~~Ll~LL~s~--~~~v 220 (390)
+.+.+.+.+||..|...+-.+++ |+|...-.-++. +.+..|+..+.+. +...
T Consensus 151 ~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~ 230 (257)
T 3gs3_A 151 DMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVN 230 (257)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHH
T ss_pred HHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHH
Confidence 35677889999999988887762 455443333333 6778888887764 3445
Q ss_pred HHHHHHHHHHHhhCCccchHHHH
Q 016423 221 AVKALYTVSSLIRNNLAGQEMFY 243 (390)
Q Consensus 221 r~kAL~ALSsLiR~~~~a~~~f~ 243 (390)
-...+..|+.++|.-|.-...++
T Consensus 231 l~a~lnsL~~Iak~RP~~~~rIl 253 (257)
T 3gs3_A 231 LIACTSSLCTIAKMRPIFMGAVV 253 (257)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHH
Confidence 66889999999998887655543
No 148
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=33.22 E-value=70 Score=29.58 Aligned_cols=91 Identities=12% Similarity=0.027 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHHhh-CChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHH
Q 016423 174 PDTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 252 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~Q-NNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~ 252 (390)
++=.||..++.+++..+. -+|. ..++.+.....+++..||+-|+-.+-.-+.. +.-... -.-.+++|.
T Consensus 116 ~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~d--p~~ll~iL~ 184 (240)
T 3l9t_A 116 NNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKEN--PNEAIRRIA 184 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTC--HHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcC--HHHHHHHHH
Confidence 344566666666666653 3442 1456666667776767776665443221111 100000 001234444
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 253 DILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 253 ~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
.+..++ +..+|+-..+.|.++..
T Consensus 185 ~L~~D~--s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 185 DLKEDV--SEYVRKSVGNALRDISK 207 (240)
T ss_dssp TTTTCS--CHHHHHHHHHHHHHHHT
T ss_pred HhcCCh--HHHHHHHHHHHHHHHhh
Confidence 433443 67778888888888874
No 149
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=31.81 E-value=39 Score=27.60 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCC
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 235 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~ 235 (390)
|+.+.+.|+..+.||+-+.- . . .. ++..+.+-+...+.+-+...+|-+..++++.
T Consensus 17 L~~s~~sI~~~s~w~l~h~~-~---a-~~-----Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 17 VTNTMESIQGLSSWCIENKK-H---H-ST-----IVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp CCSSHHHHHHHHHHHHHTGG-G---H-HH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHhHH-H---H-HH-----HHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 56677889999999997652 1 1 11 2333444455556677889999999999875
No 150
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=30.67 E-value=2.4e+02 Score=24.53 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=54.9
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCC------CHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhc-CCChhHHHHH
Q 016423 194 PLVQKQVLELGALSKLMKMVKSS------FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-NSSFEIRLHR 266 (390)
Q Consensus 194 p~~Q~~~le~g~l~~Ll~LL~s~------~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~-s~~~d~klr~ 266 (390)
...|..|++.|++..+-.-|..- +-.+|...+-+|+.+ |-..+.+ ...|+.-.+-++. ++...+..++
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI~~e~L-k~SglGkvV~~l~k~~~et~~nkr 140 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PVKTEHL-KESGLGRVVIFYTKSKRVEAQLAR 140 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHH-HHHSHHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CCCHHHH-hhCCCCceeeehhcCCcccHHHHH
Confidence 45899999999998888887632 136788888888765 5444444 4556555555554 5555677888
Q ss_pred HHHHHHHHHhh
Q 016423 267 KAVSLVGDLAK 277 (390)
Q Consensus 267 KA~~LLs~L~~ 277 (390)
.|-.++..-+.
T Consensus 141 la~~Li~~WsR 151 (170)
T 3nfq_A 141 LAEKLIAEWTR 151 (170)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 88888887753
No 151
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=30.18 E-value=3.8e+02 Score=25.88 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=75.8
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccc----hHHHHHcCcHHHHHHHh---cCCChhHHHHHHHHHHH
Q 016423 200 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG----QEMFYVEAGDLMLQDIL---GNSSFEIRLHRKAVSLV 272 (390)
Q Consensus 200 ~le~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a----~~~f~~~gGl~~L~~lL---~s~~~d~klr~KA~~LL 272 (390)
+...+.+..|+..|..=+-+.|..+..-.++++|..+.+ .+.+.. -..+|..++ ..+ ++ -..+=.+|
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~--di--Al~~G~mL 147 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESP--EI--ALNCGIML 147 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGST--TT--HHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccc--hh--HhHHHHHH
Confidence 566688999999998777778888888899999986543 333332 233333333 332 32 22333334
Q ss_pred HHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 016423 273 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 325 (390)
Q Consensus 273 s~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~ 325 (390)
...+ .++.....+...+.+-.+.+.+..++.++-.-|..++..|++-
T Consensus 148 Reci------r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~ 194 (341)
T 1upk_A 148 RECI------RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR 194 (341)
T ss_dssp HHHH------TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS
T ss_pred HHHH------HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 4433 2445556666777777888888999999999999888888763
No 152
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=30.11 E-value=1.2e+02 Score=27.74 Aligned_cols=158 Identities=12% Similarity=0.111 Sum_probs=89.5
Q ss_pred CCCHHHHHHhHHHHHHHHHHcCCCChHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHhhccccccc-------ccCCCCC
Q 016423 104 RLSPSELKKRQMEIKELMEKLKTPSDAQL-IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-------GQLNHPD 175 (390)
Q Consensus 104 ~~s~e~l~~r~~~L~eal~~~~~~~d~~~-Mk~~l~~l~~~~~s~e~~~~aLd~Le~lve~IDnAn-------~lL~s~~ 175 (390)
+++|+++. -+..++..+ ++..+. ..-+.+++..=. .+.-++|-++-++-...-+. ..+.+.+
T Consensus 34 ~ls~~el~----~l~~~l~~l--~~~~~~~~~~~~ki~~~WP----~~fP~lDllRl~~~~~~~~~~l~~~l~~~~~~~~ 103 (253)
T 3gae_A 34 TFDDEILA----QIGGALHDI--DESWELLLSFANTIRSNWE----IKTPAYDIVRLIVKKLPYSSDIKDYIEEGLGNKN 103 (253)
T ss_dssp CSCHHHHH----HHHHHHTCH--HHHHHHHHHHHHHHHHHCS----CCHHHHHHHHHHGGGCSCGGGGHHHHHHHTTCSS
T ss_pred CCCHHHHH----HHHHHHhcc--cccHHHHHHHHHHHHHhCC----ccchHHHHHHHHHcCCchHHHHHHHHHHhcCCCc
Confidence 68998753 344444311 112222 222334443321 47778888888776655444 3344567
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhcC----C----CHHHHHH---HHHHHHHHhhCCccchHHHHH
Q 016423 176 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS----S----FVEEAVK---ALYTVSSLIRNNLAGQEMFYV 244 (390)
Q Consensus 176 ~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~s----~----~~~vr~k---AL~ALSsLiR~~~~a~~~f~~ 244 (390)
+..+..++.+++++.++.+..++.+........++..+.+ . +..++.. .++-+|....+.+..
T Consensus 104 ~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~------ 177 (253)
T 3gae_A 104 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD------ 177 (253)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC------
T ss_pred hhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch------
Confidence 8899999999999988876456666554345555555422 1 2245543 345555555443321
Q ss_pred cCcHHHHHHHhcC----C---ChhHHHHHHHHHHHHHHhh
Q 016423 245 EAGDLMLQDILGN----S---SFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 245 ~gGl~~L~~lL~s----~---~~d~klr~KA~~LLs~L~~ 277 (390)
......+..++.. . ..+....-+++.++.+|+.
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 2233445555442 1 1245577889999999985
No 153
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=27.79 E-value=31 Score=22.31 Aligned_cols=13 Identities=8% Similarity=0.246 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHc
Q 016423 112 KRQMEIKELMEKL 124 (390)
Q Consensus 112 ~r~~~L~eal~~~ 124 (390)
+|+.||++.|+.+
T Consensus 19 ~R~~WLq~~l~~v 31 (34)
T 1et1_A 19 ERVEWLRKKLQDV 31 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6999999998753
No 154
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=26.22 E-value=1.6e+02 Score=32.53 Aligned_cols=151 Identities=14% Similarity=0.075 Sum_probs=86.7
Q ss_pred HHHc-CCCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhhc-------cccccc------ccCCCCC-hHHHHHH
Q 016423 121 MEKL-KTPSDAQLIQIAIDDLNNST---LSLEDSQRALQELLILVE-------PIDNAN------GQLNHPD-TDIRKIS 182 (390)
Q Consensus 121 l~~~-~~~~d~~~Mk~~l~~l~~~~---~s~e~~~~aLd~Le~lve-------~IDnAn------~lL~s~~-~~vR~~A 182 (390)
+..+ ..+-..+.+.+.+..+.... .+- .|..+|.-++-++= .-.... .+|.++. .+||+.|
T Consensus 786 l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~A 864 (997)
T 1vsy_5 786 YAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRA 864 (997)
T ss_dssp HHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 5555 35556677777777776533 345 77777666543332 111111 7899999 9999999
Q ss_pred HHHHHHHhhCC-h-HHHHHHHh---cCc-----HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccch--HHHHHcCcHHH
Q 016423 183 AWILGKASQNN-P-LVQKQVLE---LGA-----LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLM 250 (390)
Q Consensus 183 a~vLgta~QNN-p-~~Q~~~le---~g~-----l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~--~~f~~~gGl~~ 250 (390)
+.+|+.+++.. + .....+++ ... ...+-+-... +...+-.|+.+||++|..+|... -.++ .+-+..
T Consensus 865 a~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~-~~~~rH~aVLgL~AlV~a~Py~vP~P~w~-P~~l~~ 942 (997)
T 1vsy_5 865 ASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSK-TDIKIHGNVLGLGAIISAFPYVFPLPPWI-PKNLSN 942 (997)
T ss_dssp HHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHH-HCHHHHHHHHHHHHHHTTCSCCSSCCTHH-HHHHHH
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccch-HHHHHHHHHHHHHHHHhhCCCCCCCCccc-HHHHHH
Confidence 99999999997 5 33322222 111 1121110000 00235589999999999999874 3333 122334
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhh
Q 016423 251 LQDILGNSSFEIRLHRKAVSLVGDLAK 277 (390)
Q Consensus 251 L~~lL~s~~~d~klr~KA~~LLs~L~~ 277 (390)
|.....++ .+ ++.-+-..|++.-.
T Consensus 943 La~~~~~~--~~-i~~tvk~tlseFkr 966 (997)
T 1vsy_5 943 LSSWARTS--GM-TGNAAKNTISEFKK 966 (997)
T ss_dssp HHTTSSSC--SS-HHHHTHHHHHHHHH
T ss_pred HHHHhCCC--Cc-hHHHHHHHHHHHHh
Confidence 44334443 22 56666667777765
No 155
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=25.83 E-value=34 Score=22.71 Aligned_cols=13 Identities=8% Similarity=0.246 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHc
Q 016423 112 KRQMEIKELMEKL 124 (390)
Q Consensus 112 ~r~~~L~eal~~~ 124 (390)
+|++||++.|+.+
T Consensus 19 ~R~~WLq~~L~~v 31 (39)
T 1bwx_A 19 ERVEWLRKKLQDV 31 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 5999999999865
No 156
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=25.52 E-value=41 Score=19.98 Aligned_cols=17 Identities=18% Similarity=0.557 Sum_probs=13.1
Q ss_pred HHHHHhHHHHHHHHHHcC
Q 016423 108 SELKKRQMEIKELMEKLK 125 (390)
Q Consensus 108 e~l~~r~~~L~eal~~~~ 125 (390)
+++ +|+-||.++|..+.
T Consensus 5 Q~~-rRr~wL~~ll~~vh 21 (24)
T 3h3g_B 5 QDL-RRRFFLHHLIAEIH 21 (26)
T ss_dssp HHH-HHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHHhh
Confidence 445 69999999998653
No 157
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=25.08 E-value=4.9e+02 Score=25.43 Aligned_cols=115 Identities=12% Similarity=0.112 Sum_probs=75.3
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCccchHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhh-
Q 016423 203 LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE- 281 (390)
Q Consensus 203 ~g~l~~Ll~LL~s~~~~vr~kAL~ALSsLiR~~~~a~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~- 281 (390)
.+.++.++.+..+.+.++|...+.-|.-.+...+.-. ..-++.|..+|.++ ++.+.++++...+++..-.+.
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~--d~~V~K~~I~~~tslYpl~f~~ 134 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDE--NVNVVKKAILTMTQLYKVALQW 134 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999988888899888777777776433332 23456777788765 566788887777776542211
Q ss_pred -cCCCCC----chhhhh-cCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 282 -NMHKVE----PPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 282 -~~~~~~----~~~l~~-~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
..++.. ...... ..+-..++.++.+.+..++-.++..+..++-
T Consensus 135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 011211 111211 2445566777888899999999999988773
No 158
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=23.21 E-value=4.4e+02 Score=24.17 Aligned_cols=131 Identities=8% Similarity=0.042 Sum_probs=81.4
Q ss_pred cCCCCChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhh-CCccchHHHHHcCc
Q 016423 170 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIR-NNLAGQEMFYVEAG 247 (390)
Q Consensus 170 lL~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL~-s~~~~vr~kAL~ALSsLiR-~~~~a~~~f~~~gG 247 (390)
+.+++..++|..|+.+||.+ . + .. ..++.+-..+. .++=.|+.-+.-+++.+|. .+|.. -
T Consensus 79 L~~~~~deVR~~Av~lLg~~-~--~-~~------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~ 140 (240)
T 3l9t_A 79 AYQSDVYQVRMYAVFLFGYL-S--K-DK------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------A 140 (240)
T ss_dssp HHTCSSHHHHHHHHHHHHHT-T--T-SH------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------T
T ss_pred HHhCcchHHHHHHHHHHHhc-c--C-cH------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------H
Confidence 45788889999999999988 2 1 11 24666666444 3344688888888888885 33332 3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHhcCh
Q 016423 248 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 327 (390)
Q Consensus 248 l~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~~~~ 327 (390)
++.+...+.++ +..+|+=|.-.+.--+. .+... ..-.-+++.+..+...++.-||..+..+|.-++...|
T Consensus 141 l~~~~~W~~d~--n~~VRR~Ase~~rpW~~------~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 141 LPIIDEWLKSS--NLHTRRAATEGLRIWTN------RPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp HHHHHHHHHCS--SHHHHHHHHHHTCSGGG------STTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHhhHHHhc------cchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 45667777776 66677766444332121 11111 0011244555555566688899999999999998665
Q ss_pred h
Q 016423 328 T 328 (390)
Q Consensus 328 ~ 328 (390)
+
T Consensus 211 d 211 (240)
T 3l9t_A 211 D 211 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 159
>1nkd_A ROP; atomic resolution structure alpha-helix bundle, transcription regulation; 1.09A {Escherichia coli} SCOP: a.30.1.1 PDB: 1rpo_A 1rop_A 1rpr_A 2ghy_A 1b6q_A 1gmg_A 2ijk_A 1gto_A 2ijj_A 2ijh_A 2iji_A 3k79_A 1qx8_A 1f4n_A 1f4m_A
Probab=23.16 E-value=1.9e+02 Score=21.11 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=29.4
Q ss_pred HHHHHHHhhh-hhhhhhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 016423 346 LRQQLQEVML-EEDQRDYAMDVEALRREVELIFFRKLDDSGSN 387 (390)
Q Consensus 346 Lr~~l~el~~-~e~~~ey~~dl~~lr~e~~~~~~~~~~~~~~~ 387 (390)
|-..+++++. -.++.++|+.+-.+.++++.....+++..+.+
T Consensus 22 LLEKLneL~~dlD~~A~~CE~LHe~AE~L~~~l~~r~~~~~~~ 64 (65)
T 1nkd_A 22 LLEKLNELADAADEQADICESLHDHADELYRSCLARFGDDGEN 64 (65)
T ss_dssp HHHHHHHTGGGGHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3345577754 33489999999999999999999999875543
No 160
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=22.48 E-value=2.2e+02 Score=24.02 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=46.9
Q ss_pred CCCCchhhhhcCchHHHHHhhcC------CChhHHHHHHHHHHHHHhcChhHHHHHHhhCCcHHHHHHHHHH
Q 016423 284 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 349 (390)
Q Consensus 284 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~~v~EkAL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~ 349 (390)
..+....|++.|++..+-..|.. ++..+|+..+.+|..|= -.+..++ .+|+...+.-|...
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk-~SglGkvv~~l~k~ 116 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLV-TSGVGKIVYFYSIN 116 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHH-HHCHHHHHHHHHHC
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhh-cCCCCcchhhhhcC
Confidence 56678889999999999999854 47899999998888873 2345566 78998888655443
No 161
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=21.32 E-value=6.3e+02 Score=28.16 Aligned_cols=131 Identities=8% Similarity=-0.049 Sum_probs=80.8
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHhh--cCCCHHHHHHHHHHHHHHhhCC----ccchHHHHHcCc
Q 016423 174 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV--KSSFVEEAVKALYTVSSLIRNN----LAGQEMFYVEAG 247 (390)
Q Consensus 174 ~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~g~l~~Ll~LL--~s~~~~vr~kAL~ALSsLiR~~----~~a~~~f~~~gG 247 (390)
.++.+|.+|-..|..+ +.+| .+...+...| .+.+..+|--|+..|-+.++.+ ++.....+...-
T Consensus 25 ~~~~~r~~Ae~~L~~~-~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~l 94 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEF-KEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSV 94 (1204)
T ss_dssp CCHHHHHHHHHHHHHH-HHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH-HhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4677888888888776 3333 1344444433 3345678888888898888652 333444444444
Q ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 016423 248 DLMLQDILGNS-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 324 (390)
Q Consensus 248 l~~L~~lL~s~-~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~aL~~L~~ 324 (390)
+..+...-... ..+..+|.|.+.++..++.. .-++.- .++++.++.++++ +...++.++.+|..|..
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~----d~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKR----EWPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH----HSTTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHH----hCcccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 44443321110 02577999999999999863 122111 3566777777766 55678889988888875
No 162
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=20.60 E-value=2.3e+02 Score=30.13 Aligned_cols=133 Identities=13% Similarity=0.048 Sum_probs=79.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChHHHHHHHhc--CcHHHHHHhhc--------CCC--HHHHHHHHHHHHHHhhCCccc
Q 016423 171 LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVK--------SSF--VEEAVKALYTVSSLIRNNLAG 238 (390)
Q Consensus 171 L~s~~~~vR~~Aa~vLgta~QNNp~~Q~~~le~--g~l~~Ll~LL~--------s~~--~~vr~kAL~ALSsLiR~~~~a 238 (390)
|-++.=++|--||-.|..+.......-...... ...-.|+-++. ++. .+||+-|..+|+.+ ++-|+.
T Consensus 183 LFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e 261 (800)
T 3oc3_A 183 LLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP 261 (800)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS
T ss_pred hcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh
Confidence 345666788888877777654332110000000 22333333331 222 48999999999999 776664
Q ss_pred hHHHHHcCcHHHHHHHhcCCChhHHHHHHHHHHHHHHhhhhhhcCCCCCchhhhhcCchHHHHHhhcCCChhHHHHHHHH
Q 016423 239 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 318 (390)
Q Consensus 239 ~~~f~~~gGl~~L~~lL~s~~~d~klr~KA~~LLs~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~v~EkAL~a 318 (390)
...+..|+..+..+ .=.+|--++.-|.|+ ...+ . . -.++++.++..|...|.||+..|+.+
T Consensus 262 ------~~IL~qLV~~l~~~--~WEVRHGGLLGLKYL-~DLL---~----~---Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 262 ------NDIIEQLVGFLDSG--DWQVQFSGLIALGYL-KEFV---E----D---KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp ------CCHHHHHTTGGGCS--CHHHHHHHHHHHHHT-GGGC---C----C---HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred ------HHHHHHHHhhcCCC--CeeehhhhHHHHHHH-HHHH---H----H---HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 33444444434443 445666777777887 2111 1 1 35778889999999999999999987
Q ss_pred HHHHH
Q 016423 319 IKNLL 323 (390)
Q Consensus 319 L~~L~ 323 (390)
|.-++
T Consensus 323 LiPIA 327 (800)
T 3oc3_A 323 LCHFP 327 (800)
T ss_dssp HTTSC
T ss_pred hhhhc
Confidence 77665
Done!