Query 016424
Match_columns 390
No_of_seqs 173 out of 1390
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1494 NAD-dependent malate d 100.0 7E-77 1.5E-81 558.3 29.7 339 8-365 3-342 (345)
2 TIGR01772 MDH_euk_gproteo mala 100.0 4.1E-69 8.9E-74 528.6 31.1 310 43-363 1-311 (312)
3 cd01337 MDH_glyoxysomal_mitoch 100.0 1.7E-68 3.6E-73 523.6 31.6 299 42-341 1-300 (310)
4 COG0039 Mdh Malate/lactate deh 100.0 8.5E-67 1.8E-71 507.7 31.0 291 42-346 1-306 (313)
5 PLN00106 malate dehydrogenase 100.0 1.1E-64 2.4E-69 499.1 35.3 316 30-345 7-322 (323)
6 cd05290 LDH_3 A subgroup of L- 100.0 7.8E-64 1.7E-68 490.9 31.5 285 43-343 1-305 (307)
7 PTZ00325 malate dehydrogenase; 100.0 6.5E-63 1.4E-67 486.2 33.5 314 38-364 5-319 (321)
8 PRK05086 malate dehydrogenase; 100.0 1.6E-62 3.5E-67 483.0 32.8 309 42-363 1-311 (312)
9 cd05293 LDH_1 A subgroup of L- 100.0 1.2E-62 2.5E-67 483.7 31.3 290 41-345 3-311 (312)
10 TIGR01759 MalateDH-SF1 malate 100.0 1.8E-62 3.9E-67 483.9 30.2 293 39-344 1-320 (323)
11 PLN02602 lactate dehydrogenase 100.0 4.9E-62 1.1E-66 485.1 32.5 291 42-347 38-348 (350)
12 PRK00066 ldh L-lactate dehydro 100.0 4.2E-61 9E-66 473.5 33.1 292 39-346 4-312 (315)
13 TIGR01771 L-LDH-NAD L-lactate 100.0 1.5E-61 3.2E-66 473.4 27.3 280 46-341 1-298 (299)
14 KOG1495 Lactate dehydrogenase 100.0 6E-61 1.3E-65 448.8 27.9 292 38-350 17-329 (332)
15 PRK05442 malate dehydrogenase; 100.0 3.3E-60 7.3E-65 468.4 30.1 294 39-345 2-320 (326)
16 PTZ00117 malate dehydrogenase; 100.0 3.3E-59 7.1E-64 461.0 34.0 295 39-347 3-314 (319)
17 cd05291 HicDH_like L-2-hydroxy 100.0 1.9E-59 4.2E-64 460.1 31.9 287 42-344 1-304 (306)
18 cd00300 LDH_like L-lactate deh 100.0 2E-59 4.3E-64 458.9 30.8 285 44-343 1-298 (300)
19 cd00704 MDH Malate dehydrogena 100.0 1.2E-59 2.7E-64 464.1 28.4 289 42-343 1-318 (323)
20 PTZ00082 L-lactate dehydrogena 100.0 2.3E-58 4.9E-63 455.1 34.5 292 39-344 4-317 (321)
21 PLN00112 malate dehydrogenase 100.0 1.1E-58 2.5E-63 470.8 31.2 289 38-339 97-412 (444)
22 cd01338 MDH_choloroplast_like 100.0 1.2E-58 2.6E-63 456.9 30.4 292 40-344 1-317 (322)
23 TIGR01763 MalateDH_bact malate 100.0 2.6E-58 5.6E-63 451.9 31.6 287 42-344 2-302 (305)
24 TIGR01757 Malate-DH_plant mala 100.0 2.8E-58 6.1E-63 461.7 31.5 292 38-342 41-359 (387)
25 cd05292 LDH_2 A subgroup of L- 100.0 2.4E-57 5.1E-62 445.8 32.6 288 42-345 1-306 (308)
26 TIGR01758 MDH_euk_cyt malate d 100.0 1.5E-56 3.2E-61 442.4 30.0 292 43-344 1-319 (324)
27 cd01336 MDH_cytoplasmic_cytoso 100.0 7.6E-56 1.7E-60 437.8 29.0 292 40-344 1-321 (325)
28 cd01339 LDH-like_MDH L-lactate 100.0 3.6E-55 7.7E-60 428.7 31.3 286 44-343 1-298 (300)
29 PRK06223 malate dehydrogenase; 100.0 6.5E-55 1.4E-59 427.6 33.1 291 41-345 2-304 (307)
30 cd05294 LDH-like_MDH_nadp A la 100.0 1.2E-54 2.7E-59 426.6 31.3 290 42-345 1-307 (309)
31 PLN00135 malate dehydrogenase 100.0 5.5E-54 1.2E-58 420.9 28.4 262 69-342 15-299 (309)
32 cd05295 MDH_like Malate dehydr 100.0 2.5E-53 5.4E-58 431.7 27.3 285 38-338 120-441 (452)
33 TIGR01756 LDH_protist lactate 100.0 1.5E-52 3.2E-57 411.7 27.9 266 69-346 17-307 (313)
34 cd00650 LDH_MDH_like NAD-depen 100.0 4.1E-51 9E-56 392.9 29.6 252 44-342 1-260 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 1.7E-42 3.8E-47 320.0 21.7 292 39-338 2-317 (332)
36 PF00056 Ldh_1_N: lactate/mala 100.0 3.2E-33 6.9E-38 245.3 13.7 137 42-185 1-141 (141)
37 cd05296 GH4_P_beta_glucosidase 100.0 7.7E-31 1.7E-35 267.3 27.8 276 42-337 1-370 (419)
38 PF02866 Ldh_1_C: lactate/mala 100.0 1.8E-32 3.9E-37 248.3 13.7 153 187-345 1-168 (174)
39 cd05197 GH4_glycoside_hydrolas 100.0 5.9E-31 1.3E-35 268.5 26.4 269 42-337 1-381 (425)
40 PRK15076 alpha-galactosidase; 100.0 5E-31 1.1E-35 269.8 24.8 280 41-337 1-375 (431)
41 cd05298 GH4_GlvA_pagL_like Gly 100.0 6.2E-29 1.3E-33 254.2 27.2 280 42-337 1-384 (437)
42 COG1486 CelF Alpha-galactosida 100.0 5.3E-28 1.1E-32 243.6 22.7 280 40-337 2-387 (442)
43 cd05297 GH4_alpha_glucosidase_ 100.0 1E-26 2.2E-31 237.8 27.5 278 42-337 1-378 (423)
44 PF02056 Glyco_hydro_4: Family 99.9 3.9E-22 8.3E-27 181.5 15.3 152 43-204 1-183 (183)
45 COG1004 Ugd Predicted UDP-gluc 98.9 6.7E-08 1.5E-12 97.0 17.1 116 42-169 1-132 (414)
46 PF03721 UDPG_MGDP_dh_N: UDP-g 98.6 8.3E-08 1.8E-12 88.0 7.6 133 42-188 1-149 (185)
47 PF02737 3HCDH_N: 3-hydroxyacy 98.6 8.2E-08 1.8E-12 87.6 7.5 118 43-188 1-137 (180)
48 COG1250 FadB 3-hydroxyacyl-CoA 98.5 5.4E-07 1.2E-11 88.7 10.6 119 41-187 3-140 (307)
49 PRK07066 3-hydroxybutyryl-CoA 98.5 6.8E-07 1.5E-11 88.8 10.8 120 42-187 8-141 (321)
50 PRK07819 3-hydroxybutyryl-CoA 98.5 2.1E-06 4.5E-11 84.0 12.7 123 40-190 4-146 (286)
51 PRK08293 3-hydroxybutyryl-CoA 98.4 2E-06 4.4E-11 83.8 12.3 120 41-187 3-142 (287)
52 TIGR01915 npdG NADPH-dependent 98.4 5.6E-06 1.2E-10 77.6 13.9 148 42-217 1-165 (219)
53 PLN02353 probable UDP-glucose 98.4 2.8E-06 6.2E-11 88.6 11.6 121 41-168 1-138 (473)
54 TIGR02437 FadB fatty oxidation 98.3 3.1E-06 6.8E-11 92.5 11.1 120 40-187 312-450 (714)
55 TIGR02441 fa_ox_alpha_mit fatt 98.3 2.3E-06 5E-11 93.8 9.6 120 40-187 334-472 (737)
56 PRK11730 fadB multifunctional 98.3 4.9E-06 1.1E-10 91.0 12.1 119 41-187 313-450 (715)
57 PF01210 NAD_Gly3P_dh_N: NAD-d 98.3 2.8E-06 6.1E-11 75.6 8.3 92 43-158 1-103 (157)
58 PRK11154 fadJ multifunctional 98.3 5E-06 1.1E-10 90.9 11.8 120 40-187 308-447 (708)
59 TIGR02440 FadJ fatty oxidation 98.3 7.1E-06 1.5E-10 89.6 12.8 120 40-187 303-442 (699)
60 PRK05808 3-hydroxybutyryl-CoA 98.3 9.3E-06 2E-10 78.9 12.2 120 41-188 3-141 (282)
61 PRK06035 3-hydroxyacyl-CoA deh 98.2 1.3E-05 2.9E-10 78.2 12.5 120 42-189 4-145 (291)
62 KOG2304 3-hydroxyacyl-CoA dehy 98.2 2.2E-06 4.8E-11 80.2 5.7 124 38-188 8-155 (298)
63 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.2 1.5E-05 3.3E-10 83.8 12.1 124 40-190 4-145 (503)
64 PRK07530 3-hydroxybutyryl-CoA 98.2 2.4E-05 5.1E-10 76.4 12.4 122 41-190 4-144 (292)
65 PRK06130 3-hydroxybutyryl-CoA 98.1 3.4E-05 7.3E-10 75.9 12.6 120 41-187 4-137 (311)
66 PRK09260 3-hydroxybutyryl-CoA 98.1 2.3E-05 5.1E-10 76.3 10.9 121 42-189 2-141 (288)
67 PRK08268 3-hydroxy-acyl-CoA de 98.0 4.3E-05 9.3E-10 80.6 12.6 122 41-190 7-147 (507)
68 COG0240 GpsA Glycerol-3-phosph 98.0 0.00011 2.5E-09 72.7 13.8 117 41-186 1-131 (329)
69 TIGR03026 NDP-sugDHase nucleot 98.0 0.00011 2.4E-09 75.3 14.0 119 42-174 1-137 (411)
70 PRK15057 UDP-glucose 6-dehydro 98.0 8.1E-05 1.8E-09 75.9 12.2 113 42-168 1-128 (388)
71 PRK07531 bifunctional 3-hydrox 97.9 7.4E-05 1.6E-09 78.5 12.2 104 41-165 4-121 (495)
72 PRK06129 3-hydroxyacyl-CoA deh 97.9 0.00012 2.5E-09 72.3 12.6 123 41-189 2-142 (308)
73 PLN02545 3-hydroxybutyryl-CoA 97.9 0.00013 2.8E-09 71.3 12.3 123 41-191 4-145 (295)
74 PF03807 F420_oxidored: NADP o 97.8 7.1E-05 1.5E-09 60.4 7.8 94 43-160 1-96 (96)
75 PRK00094 gpsA NAD(P)H-dependen 97.8 0.00019 4.1E-09 70.5 11.4 101 41-163 1-110 (325)
76 PRK12921 2-dehydropantoate 2-r 97.7 0.00033 7.1E-09 68.3 11.5 123 42-190 1-128 (305)
77 PRK06522 2-dehydropantoate 2-r 97.7 0.00046 1E-08 67.0 12.5 120 42-189 1-125 (304)
78 PRK15182 Vi polysaccharide bio 97.7 0.00053 1.1E-08 70.8 13.2 120 39-174 4-137 (425)
79 PRK08229 2-dehydropantoate 2-r 97.7 0.00053 1.2E-08 68.1 12.6 101 41-164 2-113 (341)
80 PRK12439 NAD(P)H-dependent gly 97.7 0.00034 7.3E-09 70.1 10.9 101 38-163 4-116 (341)
81 COG2085 Predicted dinucleotide 97.6 0.00049 1.1E-08 64.2 10.2 96 41-161 1-96 (211)
82 PLN02166 dTDP-glucose 4,6-dehy 97.6 0.0008 1.7E-08 69.7 12.7 114 39-158 118-233 (436)
83 PRK11064 wecC UDP-N-acetyl-D-m 97.6 0.0009 1.9E-08 68.9 13.0 110 41-168 3-130 (415)
84 PRK14620 NAD(P)H-dependent gly 97.6 0.00058 1.3E-08 67.6 11.1 117 42-184 1-131 (326)
85 PTZ00345 glycerol-3-phosphate 97.6 0.00065 1.4E-08 68.8 11.4 99 40-158 10-129 (365)
86 PRK14619 NAD(P)H-dependent gly 97.5 0.00056 1.2E-08 67.4 10.2 80 40-160 3-84 (308)
87 TIGR03376 glycerol3P_DH glycer 97.5 0.00083 1.8E-08 67.5 11.0 96 43-158 1-116 (342)
88 PRK14618 NAD(P)H-dependent gly 97.5 0.00095 2.1E-08 66.2 11.3 95 41-162 4-108 (328)
89 PF03446 NAD_binding_2: NAD bi 97.5 0.00066 1.4E-08 60.7 9.0 65 41-117 1-65 (163)
90 PLN00198 anthocyanidin reducta 97.4 0.0034 7.5E-08 61.9 14.4 117 40-158 8-130 (338)
91 PRK06249 2-dehydropantoate 2-r 97.4 0.0011 2.3E-08 65.5 10.6 122 39-190 3-132 (313)
92 PLN02662 cinnamyl-alcohol dehy 97.4 0.004 8.6E-08 60.7 14.4 115 40-157 3-125 (322)
93 PLN02427 UDP-apiose/xylose syn 97.4 0.0022 4.8E-08 64.7 12.4 115 39-159 12-136 (386)
94 PRK12549 shikimate 5-dehydroge 97.3 0.0012 2.5E-08 64.7 9.5 77 39-120 125-205 (284)
95 TIGR03589 PseB UDP-N-acetylglu 97.3 0.0047 1E-07 61.0 13.7 113 41-158 4-124 (324)
96 PF02719 Polysacc_synt_2: Poly 97.3 0.0012 2.5E-08 64.9 8.9 121 44-165 1-139 (293)
97 PLN02650 dihydroflavonol-4-red 97.3 0.0064 1.4E-07 60.4 14.3 118 39-158 3-127 (351)
98 PF01488 Shikimate_DH: Shikima 97.2 0.0014 2.9E-08 57.0 8.2 76 39-121 10-87 (135)
99 TIGR02354 thiF_fam2 thiamine b 97.2 0.0028 6.1E-08 58.9 10.7 75 41-117 21-118 (200)
100 COG1748 LYS9 Saccharopine dehy 97.2 0.0039 8.5E-08 63.5 12.4 153 41-219 1-160 (389)
101 PF13460 NAD_binding_10: NADH( 97.2 0.0041 9E-08 55.5 11.3 93 44-158 1-97 (183)
102 PLN02206 UDP-glucuronate decar 97.2 0.0035 7.7E-08 65.0 12.2 113 40-158 118-232 (442)
103 PF01073 3Beta_HSD: 3-beta hyd 97.2 0.0025 5.5E-08 62.0 10.4 113 45-162 1-118 (280)
104 TIGR01181 dTDP_gluc_dehyt dTDP 97.2 0.0036 7.9E-08 60.2 11.3 113 43-158 1-124 (317)
105 PLN03209 translocon at the inn 97.2 0.0066 1.4E-07 64.8 13.9 117 39-158 78-207 (576)
106 PRK07680 late competence prote 97.2 0.0036 7.9E-08 60.5 10.9 97 42-162 1-100 (273)
107 PLN02989 cinnamyl-alcohol dehy 97.2 0.013 2.8E-07 57.3 15.0 117 40-158 4-128 (325)
108 CHL00194 ycf39 Ycf39; Provisio 97.1 0.0023 4.9E-08 62.9 9.3 105 42-158 1-109 (317)
109 PRK08125 bifunctional UDP-gluc 97.1 0.0062 1.3E-07 66.2 13.5 118 29-158 306-431 (660)
110 PRK07417 arogenate dehydrogena 97.1 0.0037 8.1E-08 60.7 10.6 64 42-117 1-65 (279)
111 COG1086 Predicted nucleoside-d 97.1 0.0076 1.6E-07 63.6 13.0 127 38-165 247-387 (588)
112 PRK07502 cyclohexadienyl dehyd 97.0 0.0034 7.4E-08 61.7 9.6 68 41-117 6-74 (307)
113 PRK11880 pyrroline-5-carboxyla 97.0 0.0046 1E-07 59.3 10.3 96 41-162 2-98 (267)
114 COG0300 DltE Short-chain dehyd 97.0 0.015 3.2E-07 56.5 13.6 118 38-158 3-142 (265)
115 PRK08269 3-hydroxybutyryl-CoA 97.0 0.0056 1.2E-07 60.7 10.9 112 53-188 1-138 (314)
116 PF10727 Rossmann-like: Rossma 97.0 0.0043 9.4E-08 53.6 8.8 102 40-167 9-115 (127)
117 PRK15181 Vi polysaccharide bio 97.0 0.012 2.5E-07 58.7 13.0 116 40-158 14-140 (348)
118 PLN02214 cinnamoyl-CoA reducta 97.0 0.016 3.5E-07 57.7 14.0 111 39-157 8-125 (342)
119 PRK11908 NAD-dependent epimera 97.0 0.0068 1.5E-07 60.1 11.2 109 41-158 1-117 (347)
120 COG1893 ApbA Ketopantoate redu 97.0 0.0044 9.6E-08 61.3 9.7 121 42-190 1-127 (307)
121 TIGR03466 HpnA hopanoid-associ 97.0 0.0069 1.5E-07 58.8 10.9 108 42-158 1-112 (328)
122 PRK08655 prephenate dehydrogen 97.0 0.0056 1.2E-07 63.5 10.8 64 42-117 1-66 (437)
123 PLN02688 pyrroline-5-carboxyla 96.9 0.0059 1.3E-07 58.5 10.2 94 42-161 1-98 (266)
124 TIGR00872 gnd_rel 6-phosphoglu 96.9 0.0055 1.2E-07 60.2 10.1 95 42-161 1-96 (298)
125 COG0677 WecC UDP-N-acetyl-D-ma 96.9 0.01 2.2E-07 60.2 11.6 125 41-178 9-149 (436)
126 PRK14982 acyl-ACP reductase; P 96.9 0.0066 1.4E-07 60.9 10.2 98 39-164 153-252 (340)
127 PRK11199 tyrA bifunctional cho 96.9 0.0069 1.5E-07 61.5 10.4 54 40-117 97-150 (374)
128 PRK10675 UDP-galactose-4-epime 96.9 0.017 3.7E-07 56.7 12.9 113 42-158 1-123 (338)
129 PRK07634 pyrroline-5-carboxyla 96.8 0.014 3.1E-07 55.0 11.7 70 40-117 3-74 (245)
130 PRK06194 hypothetical protein; 96.8 0.039 8.4E-07 52.9 14.8 114 41-158 6-147 (287)
131 PRK12480 D-lactate dehydrogena 96.8 0.0093 2E-07 59.6 10.8 93 39-160 144-236 (330)
132 TIGR02356 adenyl_thiF thiazole 96.8 0.0051 1.1E-07 57.1 8.2 75 41-117 21-119 (202)
133 PRK06928 pyrroline-5-carboxyla 96.8 0.016 3.5E-07 56.3 11.8 100 41-163 1-103 (277)
134 PRK07102 short chain dehydroge 96.8 0.026 5.7E-07 52.7 12.8 115 41-158 1-134 (243)
135 PLN02583 cinnamoyl-CoA reducta 96.8 0.041 8.8E-07 53.6 14.5 114 41-158 6-127 (297)
136 COG2084 MmsB 3-hydroxyisobutyr 96.7 0.016 3.4E-07 56.9 11.2 65 42-117 1-65 (286)
137 TIGR02622 CDP_4_6_dhtase CDP-g 96.7 0.021 4.5E-07 56.8 12.4 115 40-159 3-127 (349)
138 PLN02986 cinnamyl-alcohol dehy 96.7 0.045 9.7E-07 53.6 14.6 106 41-148 5-117 (322)
139 PF01118 Semialdhyde_dh: Semia 96.7 0.0057 1.2E-07 51.9 7.2 72 43-117 1-74 (121)
140 PRK07679 pyrroline-5-carboxyla 96.7 0.013 2.9E-07 56.8 10.5 98 41-162 3-103 (279)
141 PRK12491 pyrroline-5-carboxyla 96.7 0.012 2.6E-07 57.2 10.2 96 42-162 3-101 (272)
142 PRK11559 garR tartronate semia 96.7 0.0099 2.2E-07 57.9 9.6 64 42-117 3-66 (296)
143 PF00899 ThiF: ThiF family; I 96.7 0.0041 8.8E-08 53.7 6.0 75 41-117 2-100 (135)
144 cd01487 E1_ThiF_like E1_ThiF_l 96.6 0.021 4.6E-07 51.8 10.8 73 43-117 1-96 (174)
145 PRK08267 short chain dehydroge 96.6 0.019 4.2E-07 54.1 11.0 113 41-159 1-136 (260)
146 PLN02896 cinnamyl-alcohol dehy 96.6 0.041 9E-07 54.7 13.8 115 39-158 8-137 (353)
147 PF02558 ApbA: Ketopantoate re 96.6 0.015 3.3E-07 50.5 9.5 120 44-189 1-126 (151)
148 TIGR01505 tartro_sem_red 2-hyd 96.6 0.0083 1.8E-07 58.4 8.6 63 43-117 1-63 (291)
149 PRK06545 prephenate dehydrogen 96.6 0.012 2.7E-07 59.3 10.0 67 42-117 1-68 (359)
150 PRK08507 prephenate dehydrogen 96.6 0.011 2.4E-07 57.2 9.3 66 42-117 1-66 (275)
151 TIGR01777 yfcH conserved hypot 96.6 0.014 3E-07 55.6 9.9 99 44-151 1-103 (292)
152 PRK15461 NADH-dependent gamma- 96.6 0.011 2.5E-07 57.9 9.4 65 41-117 1-65 (296)
153 PLN02695 GDP-D-mannose-3',5'-e 96.6 0.0098 2.1E-07 60.0 9.0 112 38-158 18-136 (370)
154 cd01065 NAD_bind_Shikimate_DH 96.6 0.0091 2E-07 52.1 7.7 75 39-121 17-93 (155)
155 PLN02778 3,5-epimerase/4-reduc 96.6 0.045 9.7E-07 53.6 13.4 91 38-150 6-103 (298)
156 cd05312 NAD_bind_1_malic_enz N 96.6 0.034 7.3E-07 54.3 12.2 121 41-187 25-166 (279)
157 PRK08644 thiamine biosynthesis 96.5 0.0087 1.9E-07 56.1 7.9 74 42-117 29-125 (212)
158 PTZ00142 6-phosphogluconate de 96.5 0.016 3.5E-07 60.7 10.7 98 41-161 1-104 (470)
159 cd05213 NAD_bind_Glutamyl_tRNA 96.5 0.018 4E-07 56.9 10.5 100 39-164 176-279 (311)
160 PRK05866 short chain dehydroge 96.5 0.053 1.2E-06 52.7 13.6 98 18-120 18-128 (293)
161 PRK07231 fabG 3-ketoacyl-(acyl 96.5 0.079 1.7E-06 49.2 14.2 76 40-120 4-92 (251)
162 PRK12475 thiamine/molybdopteri 96.5 0.01 2.2E-07 59.5 8.5 75 41-117 24-124 (338)
163 PRK10217 dTDP-glucose 4,6-dehy 96.5 0.036 7.8E-07 54.9 12.2 107 41-148 1-115 (355)
164 PLN02240 UDP-glucose 4-epimera 96.5 0.058 1.3E-06 53.2 13.6 116 40-158 4-131 (352)
165 PRK08291 ectoine utilization p 96.4 0.017 3.6E-07 57.7 9.6 74 40-118 131-206 (330)
166 KOG2666 UDP-glucose/GDP-mannos 96.4 0.013 2.8E-07 57.9 8.4 78 41-122 1-91 (481)
167 PRK08223 hypothetical protein; 96.4 0.013 2.9E-07 57.3 8.7 73 42-116 28-124 (287)
168 PRK07326 short chain dehydroge 96.4 0.097 2.1E-06 48.4 13.8 115 41-160 6-141 (237)
169 PRK10084 dTDP-glucose 4,6 dehy 96.4 0.035 7.6E-07 54.9 11.5 106 42-148 1-114 (352)
170 PRK15469 ghrA bifunctional gly 96.4 0.033 7.2E-07 55.2 11.1 93 39-158 134-226 (312)
171 cd00757 ThiF_MoeB_HesA_family 96.3 0.013 2.7E-07 55.4 7.7 76 41-118 21-120 (228)
172 cd05311 NAD_bind_2_malic_enz N 96.3 0.032 6.9E-07 52.8 10.4 101 39-163 23-133 (226)
173 PLN02780 ketoreductase/ oxidor 96.3 0.05 1.1E-06 53.8 12.3 116 41-158 53-192 (320)
174 PRK09599 6-phosphogluconate de 96.3 0.026 5.6E-07 55.4 10.0 64 42-117 1-67 (301)
175 PF03949 Malic_M: Malic enzyme 96.3 0.016 3.5E-07 55.8 8.2 106 41-166 25-151 (255)
176 PRK12939 short chain dehydroge 96.3 0.1 2.2E-06 48.5 13.5 116 40-159 6-143 (250)
177 cd01078 NAD_bind_H4MPT_DH NADP 96.3 0.014 3E-07 53.4 7.5 78 40-120 27-108 (194)
178 PLN02712 arogenate dehydrogena 96.3 0.028 6E-07 61.4 10.9 67 38-117 49-116 (667)
179 PRK12384 sorbitol-6-phosphate 96.3 0.086 1.9E-06 49.6 13.1 117 42-160 3-142 (259)
180 PRK08251 short chain dehydroge 96.3 0.14 3E-06 47.7 14.4 78 42-121 3-93 (248)
181 PLN02260 probable rhamnose bio 96.3 0.076 1.6E-06 57.8 14.3 120 39-158 4-131 (668)
182 PRK13394 3-hydroxybutyrate deh 96.3 0.066 1.4E-06 50.2 12.2 114 41-158 7-143 (262)
183 PRK05600 thiamine biosynthesis 96.3 0.019 4.2E-07 58.3 9.0 75 41-117 41-139 (370)
184 PRK05708 2-dehydropantoate 2-r 96.3 0.055 1.2E-06 53.3 12.0 120 41-189 2-129 (305)
185 PRK08618 ornithine cyclodeamin 96.2 0.023 5E-07 56.6 9.2 73 41-118 127-201 (325)
186 cd01483 E1_enzyme_family Super 96.2 0.027 5.8E-07 48.9 8.6 73 43-117 1-97 (143)
187 KOG1502 Flavonol reductase/cin 96.2 0.074 1.6E-06 53.0 12.6 118 40-162 5-131 (327)
188 PRK07688 thiamine/molybdopteri 96.2 0.018 3.9E-07 57.8 8.4 74 42-117 25-124 (339)
189 TIGR01214 rmlD dTDP-4-dehydror 96.2 0.024 5.1E-07 54.3 9.0 95 43-158 1-99 (287)
190 COG0345 ProC Pyrroline-5-carbo 96.2 0.031 6.7E-07 54.3 9.6 97 41-162 1-99 (266)
191 PRK06476 pyrroline-5-carboxyla 96.2 0.024 5.3E-07 54.2 8.8 69 42-118 1-70 (258)
192 PRK07201 short chain dehydroge 96.2 0.095 2.1E-06 56.5 14.3 109 42-151 1-118 (657)
193 PRK12490 6-phosphogluconate de 96.2 0.052 1.1E-06 53.3 11.2 64 42-117 1-67 (299)
194 PRK13243 glyoxylate reductase; 96.2 0.026 5.7E-07 56.5 9.2 97 40-163 149-247 (333)
195 PLN02256 arogenate dehydrogena 96.2 0.032 7E-07 55.1 9.8 65 40-117 35-100 (304)
196 cd00762 NAD_bind_malic_enz NAD 96.1 0.041 9E-07 53.0 10.1 122 41-187 25-167 (254)
197 PRK05690 molybdopterin biosynt 96.1 0.022 4.7E-07 54.6 8.2 74 42-117 33-130 (245)
198 TIGR02355 moeB molybdopterin s 96.1 0.021 4.5E-07 54.6 8.0 35 41-77 24-58 (240)
199 PRK06407 ornithine cyclodeamin 96.1 0.028 6.1E-07 55.5 9.2 73 40-117 116-190 (301)
200 PF11975 Glyco_hydro_4C: Famil 96.1 0.024 5.1E-07 53.7 8.3 61 274-338 141-205 (232)
201 TIGR01832 kduD 2-deoxy-D-gluco 96.1 0.14 3.1E-06 47.7 13.4 115 40-158 4-139 (248)
202 PLN02653 GDP-mannose 4,6-dehyd 96.1 0.068 1.5E-06 52.8 11.8 110 39-150 4-126 (340)
203 TIGR02371 ala_DH_arch alanine 96.1 0.024 5.3E-07 56.5 8.7 71 41-117 128-200 (325)
204 TIGR03206 benzo_BadH 2-hydroxy 96.1 0.12 2.6E-06 48.0 13.0 114 41-158 3-138 (250)
205 PF02423 OCD_Mu_crystall: Orni 96.1 0.021 4.6E-07 56.6 8.2 70 41-117 128-200 (313)
206 PLN02572 UDP-sulfoquinovose sy 96.1 0.07 1.5E-06 55.3 12.3 117 38-157 44-189 (442)
207 PRK10538 malonic semialdehyde 96.1 0.031 6.6E-07 52.5 8.8 111 42-159 1-134 (248)
208 PRK07424 bifunctional sterol d 96.1 0.057 1.2E-06 55.6 11.4 104 39-147 176-290 (406)
209 TIGR01179 galE UDP-glucose-4-e 96.1 0.067 1.4E-06 51.6 11.4 105 43-152 1-115 (328)
210 PRK12828 short chain dehydroge 96.0 0.064 1.4E-06 49.3 10.6 114 41-158 7-140 (239)
211 PRK07574 formate dehydrogenase 96.0 0.044 9.4E-07 56.0 10.2 94 39-158 190-284 (385)
212 PRK08818 prephenate dehydrogen 96.0 0.038 8.3E-07 56.1 9.7 56 41-117 4-59 (370)
213 PRK12367 short chain dehydroge 96.0 0.083 1.8E-06 50.2 11.5 99 42-144 15-117 (245)
214 TIGR01472 gmd GDP-mannose 4,6- 96.0 0.085 1.9E-06 52.2 12.1 106 42-149 1-120 (343)
215 PRK07523 gluconate 5-dehydroge 96.0 0.15 3.2E-06 47.9 13.2 116 41-160 10-147 (255)
216 TIGR02992 ectoine_eutC ectoine 96.0 0.034 7.3E-07 55.4 9.1 74 40-118 128-203 (326)
217 PRK05875 short chain dehydroge 96.0 0.13 2.8E-06 49.0 12.9 116 41-158 7-145 (276)
218 COG0451 WcaG Nucleoside-diphos 96.0 0.051 1.1E-06 52.2 10.2 100 42-147 1-105 (314)
219 PRK07806 short chain dehydroge 96.0 0.097 2.1E-06 48.8 11.8 114 41-158 6-134 (248)
220 PRK05855 short chain dehydroge 96.0 0.21 4.5E-06 52.4 15.6 117 39-159 313-452 (582)
221 cd01485 E1-1_like Ubiquitin ac 96.0 0.03 6.6E-07 51.8 8.2 35 41-77 19-53 (198)
222 KOG1201 Hydroxysteroid 17-beta 96.0 0.12 2.7E-06 50.6 12.5 114 38-157 35-171 (300)
223 COG2910 Putative NADH-flavin r 95.9 0.057 1.2E-06 49.6 9.5 74 42-121 1-74 (211)
224 PRK06914 short chain dehydroge 95.9 0.15 3.2E-06 48.6 13.0 114 42-158 4-139 (280)
225 PRK12937 short chain dehydroge 95.9 0.12 2.6E-06 47.9 12.1 115 40-158 4-139 (245)
226 PRK07340 ornithine cyclodeamin 95.9 0.039 8.5E-07 54.5 9.1 72 40-118 124-197 (304)
227 PRK12829 short chain dehydroge 95.9 0.23 5E-06 46.5 14.1 75 40-120 10-97 (264)
228 PTZ00431 pyrroline carboxylate 95.9 0.023 4.9E-07 54.7 7.3 90 41-162 3-94 (260)
229 PRK08605 D-lactate dehydrogena 95.9 0.029 6.4E-07 56.0 8.3 65 39-117 144-208 (332)
230 PRK06141 ornithine cyclodeamin 95.9 0.042 9.1E-07 54.5 9.3 73 40-118 124-198 (314)
231 COG1712 Predicted dinucleotide 95.9 0.063 1.4E-06 50.8 9.7 96 42-162 1-97 (255)
232 PRK12429 3-hydroxybutyrate deh 95.9 0.099 2.1E-06 48.8 11.3 76 41-120 4-92 (258)
233 PRK08340 glucose-1-dehydrogena 95.9 0.18 4E-06 47.5 13.2 74 42-120 1-87 (259)
234 PRK08265 short chain dehydroge 95.9 0.057 1.2E-06 51.2 9.7 111 41-158 6-136 (261)
235 COG0569 TrkA K+ transport syst 95.8 0.015 3.3E-07 54.9 5.6 71 42-118 1-75 (225)
236 PRK07063 short chain dehydroge 95.8 0.19 4.1E-06 47.4 13.2 116 41-159 7-145 (260)
237 PRK05717 oxidoreductase; Valid 95.8 0.035 7.6E-07 52.3 8.1 113 39-158 8-143 (255)
238 PF02826 2-Hacid_dh_C: D-isome 95.8 0.055 1.2E-06 49.0 9.0 96 38-160 33-129 (178)
239 PRK06172 short chain dehydroge 95.8 0.14 3E-06 48.0 12.1 76 41-120 7-95 (253)
240 PRK07814 short chain dehydroge 95.8 0.15 3.3E-06 48.2 12.5 116 40-159 9-147 (263)
241 PRK08945 putative oxoacyl-(acy 95.8 0.2 4.3E-06 46.8 13.0 118 39-159 10-152 (247)
242 PRK06924 short chain dehydroge 95.8 0.19 4.1E-06 46.9 12.8 35 41-77 1-35 (251)
243 PRK08213 gluconate 5-dehydroge 95.8 0.2 4.4E-06 47.1 13.2 115 40-159 11-149 (259)
244 PRK14806 bifunctional cyclohex 95.8 0.069 1.5E-06 58.8 11.3 92 42-158 4-97 (735)
245 PRK08643 acetoin reductase; Va 95.8 0.21 4.6E-06 46.8 13.2 114 42-159 3-139 (256)
246 PLN02657 3,8-divinyl protochlo 95.8 0.075 1.6E-06 54.2 10.8 113 38-158 57-181 (390)
247 PRK08085 gluconate 5-dehydroge 95.8 0.16 3.5E-06 47.6 12.3 114 41-158 9-144 (254)
248 PLN02253 xanthoxin dehydrogena 95.8 0.31 6.7E-06 46.5 14.4 76 41-121 18-106 (280)
249 PRK08762 molybdopterin biosynt 95.7 0.035 7.6E-07 56.4 8.2 75 41-117 135-233 (376)
250 PRK05884 short chain dehydroge 95.7 0.057 1.2E-06 50.2 9.0 34 42-77 1-34 (223)
251 PRK07904 short chain dehydroge 95.7 0.17 3.7E-06 48.0 12.4 115 40-158 7-145 (253)
252 TIGR02853 spore_dpaA dipicolin 95.7 0.046 1E-06 53.6 8.6 97 39-163 149-246 (287)
253 PRK13304 L-aspartate dehydroge 95.7 0.053 1.1E-06 52.5 8.9 87 41-152 1-88 (265)
254 PRK07024 short chain dehydroge 95.7 0.18 3.9E-06 47.5 12.5 76 41-121 2-90 (257)
255 PRK09987 dTDP-4-dehydrorhamnos 95.7 0.052 1.1E-06 52.9 9.0 99 42-158 1-103 (299)
256 PRK05479 ketol-acid reductoiso 95.7 0.078 1.7E-06 53.1 10.2 67 39-117 15-81 (330)
257 PRK07832 short chain dehydroge 95.7 0.27 5.8E-06 46.8 13.6 116 42-160 1-139 (272)
258 PF01370 Epimerase: NAD depend 95.7 0.046 1E-06 50.3 8.1 109 44-158 1-115 (236)
259 PRK08306 dipicolinate synthase 95.7 0.056 1.2E-06 53.2 9.1 95 39-162 150-246 (296)
260 PRK15059 tartronate semialdehy 95.7 0.044 9.5E-07 53.8 8.2 63 42-117 1-63 (292)
261 PLN03139 formate dehydrogenase 95.6 0.07 1.5E-06 54.5 9.9 94 39-158 197-291 (386)
262 PRK05876 short chain dehydroge 95.6 0.17 3.7E-06 48.6 12.1 115 41-159 6-143 (275)
263 PRK07067 sorbitol dehydrogenas 95.6 0.078 1.7E-06 49.9 9.6 112 41-159 6-140 (257)
264 PRK00048 dihydrodipicolinate r 95.6 0.42 9E-06 46.0 14.7 144 41-219 1-148 (257)
265 PRK05865 hypothetical protein; 95.6 0.07 1.5E-06 59.7 10.4 104 42-161 1-105 (854)
266 PRK07677 short chain dehydroge 95.6 0.46 9.9E-06 44.6 14.7 113 42-158 2-137 (252)
267 PLN02928 oxidoreductase family 95.6 0.051 1.1E-06 54.8 8.5 105 39-159 157-263 (347)
268 PRK06181 short chain dehydroge 95.6 0.19 4.1E-06 47.3 12.1 115 42-160 2-138 (263)
269 PF02882 THF_DHG_CYH_C: Tetrah 95.6 0.058 1.3E-06 48.5 8.0 59 38-121 33-91 (160)
270 cd01492 Aos1_SUMO Ubiquitin ac 95.6 0.068 1.5E-06 49.5 8.7 35 41-77 21-55 (197)
271 PRK07774 short chain dehydroge 95.6 0.27 5.9E-06 45.7 13.0 115 40-158 5-144 (250)
272 PRK09242 tropinone reductase; 95.5 0.37 7.9E-06 45.3 13.9 78 40-119 8-98 (257)
273 PRK06823 ornithine cyclodeamin 95.5 0.069 1.5E-06 53.1 9.2 72 40-117 127-200 (315)
274 PF03435 Saccharop_dh: Sacchar 95.5 0.01 2.3E-07 60.0 3.4 72 44-120 1-78 (386)
275 PRK06180 short chain dehydroge 95.5 0.11 2.5E-06 49.6 10.5 113 41-158 4-136 (277)
276 PRK14106 murD UDP-N-acetylmura 95.5 0.095 2.1E-06 54.0 10.6 125 40-175 4-133 (450)
277 PRK06196 oxidoreductase; Provi 95.5 0.1 2.2E-06 51.1 10.3 112 41-158 26-155 (315)
278 PLN02686 cinnamoyl-CoA reducta 95.5 0.22 4.7E-06 50.2 12.9 109 38-148 50-169 (367)
279 PRK08993 2-deoxy-D-gluconate 3 95.5 0.48 1E-05 44.5 14.6 115 41-159 10-145 (253)
280 PRK06057 short chain dehydroge 95.5 0.089 1.9E-06 49.5 9.5 35 41-77 7-41 (255)
281 PRK05650 short chain dehydroge 95.5 0.21 4.6E-06 47.4 12.2 112 42-158 1-135 (270)
282 cd01491 Ube1_repeat1 Ubiquitin 95.5 0.11 2.3E-06 51.1 10.3 73 42-117 20-113 (286)
283 KOG2305 3-hydroxyacyl-CoA dehy 95.5 0.026 5.6E-07 53.4 5.6 94 42-152 4-114 (313)
284 TIGR00873 gnd 6-phosphoglucona 95.5 0.053 1.1E-06 56.8 8.6 102 43-164 1-106 (467)
285 PRK07589 ornithine cyclodeamin 95.5 0.057 1.2E-06 54.4 8.5 71 41-117 129-201 (346)
286 PRK07069 short chain dehydroge 95.5 0.35 7.5E-06 45.0 13.4 114 43-159 1-138 (251)
287 KOG1205 Predicted dehydrogenas 95.5 0.19 4.2E-06 49.2 11.9 121 41-165 12-156 (282)
288 PLN00141 Tic62-NAD(P)-related 95.5 0.054 1.2E-06 51.2 7.9 110 39-157 15-130 (251)
289 cd01079 NAD_bind_m-THF_DH NAD 95.5 0.033 7.2E-07 51.6 6.1 117 39-186 60-178 (197)
290 COG1064 AdhP Zn-dependent alco 95.5 0.3 6.5E-06 49.1 13.3 118 37-187 163-285 (339)
291 PRK09186 flagellin modificatio 95.4 0.2 4.3E-06 46.8 11.6 78 40-119 3-93 (256)
292 PRK08328 hypothetical protein; 95.4 0.064 1.4E-06 50.9 8.3 35 41-77 27-61 (231)
293 PRK09291 short chain dehydroge 95.4 0.37 8.1E-06 45.0 13.4 76 42-121 3-85 (257)
294 PRK05597 molybdopterin biosynt 95.4 0.067 1.5E-06 54.0 8.8 74 42-117 29-126 (355)
295 PRK07411 hypothetical protein; 95.4 0.052 1.1E-06 55.5 8.1 74 42-117 39-136 (390)
296 PF01113 DapB_N: Dihydrodipico 95.4 0.0078 1.7E-07 51.5 1.7 73 42-117 1-75 (124)
297 PRK12481 2-deoxy-D-gluconate 3 95.4 0.18 3.9E-06 47.6 11.2 115 41-159 8-143 (251)
298 PRK07890 short chain dehydroge 95.4 0.67 1.5E-05 43.3 15.1 116 40-159 4-141 (258)
299 PRK12826 3-ketoacyl-(acyl-carr 95.4 0.31 6.8E-06 45.1 12.7 114 40-158 5-141 (251)
300 TIGR02197 heptose_epim ADP-L-g 95.4 0.13 2.7E-06 49.8 10.3 109 44-158 1-113 (314)
301 PRK06138 short chain dehydroge 95.4 0.34 7.4E-06 45.0 13.0 76 40-120 4-92 (252)
302 PRK07666 fabG 3-ketoacyl-(acyl 95.4 0.3 6.4E-06 45.3 12.5 116 41-160 7-144 (239)
303 PRK11150 rfaD ADP-L-glycero-D- 95.4 0.12 2.5E-06 50.2 10.1 108 44-158 2-115 (308)
304 PRK07453 protochlorophyllide o 95.4 0.21 4.5E-06 49.0 12.0 115 40-158 5-144 (322)
305 PRK06841 short chain dehydroge 95.4 0.13 2.8E-06 48.1 10.1 113 40-158 14-147 (255)
306 PRK01438 murD UDP-N-acetylmura 95.4 0.14 3.1E-06 53.4 11.3 125 41-175 16-147 (480)
307 TIGR02632 RhaD_aldol-ADH rhamn 95.4 0.22 4.7E-06 54.6 13.2 116 41-158 414-552 (676)
308 PRK06198 short chain dehydroge 95.4 0.51 1.1E-05 44.2 14.1 116 40-158 5-143 (260)
309 cd00401 AdoHcyase S-adenosyl-L 95.4 0.1 2.2E-06 53.8 10.0 90 39-160 200-291 (413)
310 PRK06182 short chain dehydroge 95.3 0.16 3.6E-06 48.3 10.8 112 41-158 3-132 (273)
311 PLN02350 phosphogluconate dehy 95.3 0.063 1.4E-06 56.6 8.5 99 39-160 4-109 (493)
312 PRK06124 gluconate 5-dehydroge 95.3 0.15 3.3E-06 47.8 10.4 118 40-161 10-149 (256)
313 PRK12825 fabG 3-ketoacyl-(acyl 95.3 0.45 9.8E-06 43.7 13.4 114 40-158 5-142 (249)
314 PRK12936 3-ketoacyl-(acyl-carr 95.3 0.39 8.4E-06 44.4 12.9 114 40-160 5-140 (245)
315 TIGR01809 Shik-DH-AROM shikima 95.3 0.064 1.4E-06 52.4 7.9 75 40-119 124-200 (282)
316 PRK05565 fabG 3-ketoacyl-(acyl 95.3 0.34 7.4E-06 44.8 12.5 103 41-147 5-127 (247)
317 PRK07878 molybdopterin biosynt 95.3 0.072 1.6E-06 54.5 8.6 74 42-117 43-140 (392)
318 PRK00421 murC UDP-N-acetylmura 95.3 0.17 3.6E-06 52.7 11.4 124 40-175 6-132 (461)
319 PRK14194 bifunctional 5,10-met 95.3 0.055 1.2E-06 53.5 7.3 79 38-161 156-235 (301)
320 TIGR02415 23BDH acetoin reduct 95.3 0.44 9.5E-06 44.4 13.3 112 43-158 2-136 (254)
321 PRK06046 alanine dehydrogenase 95.3 0.081 1.8E-06 52.7 8.7 71 41-117 129-201 (326)
322 PRK08339 short chain dehydroge 95.3 0.7 1.5E-05 44.0 14.9 115 41-159 8-144 (263)
323 TIGR01035 hemA glutamyl-tRNA r 95.3 0.082 1.8E-06 54.5 9.0 104 39-165 178-284 (417)
324 PRK05653 fabG 3-ketoacyl-(acyl 95.3 0.14 3E-06 47.2 9.8 114 41-158 5-140 (246)
325 cd01080 NAD_bind_m-THF_DH_Cycl 95.3 0.055 1.2E-06 49.0 6.8 58 38-121 41-99 (168)
326 PRK06718 precorrin-2 dehydroge 95.2 0.22 4.7E-06 46.3 11.0 73 40-120 9-81 (202)
327 PRK06197 short chain dehydroge 95.2 0.34 7.3E-06 47.1 12.8 117 40-159 15-152 (306)
328 PRK06482 short chain dehydroge 95.2 0.13 2.8E-06 49.0 9.8 112 42-158 3-134 (276)
329 COG4221 Short-chain alcohol de 95.2 0.24 5.1E-06 47.4 11.2 115 42-158 7-139 (246)
330 PRK06128 oxidoreductase; Provi 95.2 0.45 9.8E-06 46.2 13.7 115 41-159 55-192 (300)
331 PRK05867 short chain dehydroge 95.2 0.49 1.1E-05 44.4 13.5 114 41-158 9-145 (253)
332 PRK00045 hemA glutamyl-tRNA re 95.2 0.1 2.2E-06 53.9 9.4 105 39-165 180-287 (423)
333 PRK02705 murD UDP-N-acetylmura 95.2 0.11 2.3E-06 53.9 9.7 124 43-176 2-135 (459)
334 PRK06199 ornithine cyclodeamin 95.2 0.082 1.8E-06 53.9 8.6 74 40-117 154-231 (379)
335 PRK07576 short chain dehydroge 95.2 0.3 6.6E-06 46.4 12.1 118 40-161 8-146 (264)
336 PRK08226 short chain dehydroge 95.2 0.3 6.5E-06 46.0 12.0 114 41-158 6-140 (263)
337 PRK15116 sulfur acceptor prote 95.2 0.098 2.1E-06 50.9 8.7 34 42-77 31-64 (268)
338 PRK14192 bifunctional 5,10-met 95.2 0.084 1.8E-06 51.8 8.3 96 19-161 138-235 (283)
339 PRK08278 short chain dehydroge 95.2 1.1 2.3E-05 42.8 15.9 116 40-159 5-149 (273)
340 PRK07856 short chain dehydroge 95.1 0.21 4.6E-06 46.8 10.8 110 40-159 5-135 (252)
341 PRK14851 hypothetical protein; 95.1 0.057 1.2E-06 59.0 7.7 75 41-117 43-141 (679)
342 PRK06179 short chain dehydroge 95.1 0.084 1.8E-06 50.0 8.1 35 41-77 4-38 (270)
343 PRK12827 short chain dehydroge 95.1 0.58 1.3E-05 43.2 13.6 103 40-146 5-130 (249)
344 COG2423 Predicted ornithine cy 95.1 0.065 1.4E-06 53.6 7.5 72 41-117 130-203 (330)
345 PRK07074 short chain dehydroge 95.1 0.25 5.5E-06 46.3 11.3 112 42-159 3-136 (257)
346 TIGR01746 Thioester-redct thio 95.1 0.19 4.1E-06 49.2 10.8 114 43-158 1-135 (367)
347 TIGR03325 BphB_TodD cis-2,3-di 95.1 0.071 1.5E-06 50.4 7.5 36 40-77 4-39 (262)
348 PRK05854 short chain dehydroge 95.1 0.39 8.5E-06 47.1 13.0 79 40-120 13-104 (313)
349 PRK13302 putative L-aspartate 95.1 0.13 2.9E-06 49.9 9.5 89 40-153 5-95 (271)
350 PF05368 NmrA: NmrA-like famil 95.1 0.038 8.2E-07 51.5 5.5 73 44-120 1-75 (233)
351 PLN02712 arogenate dehydrogena 95.1 0.1 2.2E-06 57.1 9.4 67 38-117 366-433 (667)
352 PRK07478 short chain dehydroge 95.1 0.65 1.4E-05 43.5 13.9 114 41-159 6-143 (254)
353 COG0287 TyrA Prephenate dehydr 95.1 0.1 2.3E-06 51.0 8.6 67 41-117 3-72 (279)
354 PRK06101 short chain dehydroge 95.0 0.18 3.9E-06 47.1 10.0 112 42-158 2-127 (240)
355 PRK07062 short chain dehydroge 95.0 0.74 1.6E-05 43.4 14.2 78 41-120 8-98 (265)
356 PRK02006 murD UDP-N-acetylmura 95.0 0.2 4.4E-06 52.6 11.3 129 41-175 7-146 (498)
357 PRK07831 short chain dehydroge 95.0 0.65 1.4E-05 43.8 13.9 78 41-120 17-108 (262)
358 PRK06113 7-alpha-hydroxysteroi 95.0 0.81 1.8E-05 42.9 14.4 114 41-158 11-145 (255)
359 TIGR03736 PRTRC_ThiF PRTRC sys 95.0 0.12 2.7E-06 49.5 8.8 38 39-77 9-55 (244)
360 PRK06728 aspartate-semialdehyd 95.0 0.042 9.1E-07 55.4 5.8 74 38-118 2-77 (347)
361 PRK07825 short chain dehydroge 95.0 0.11 2.4E-06 49.4 8.5 112 41-158 5-136 (273)
362 PRK13529 malate dehydrogenase; 95.0 0.38 8.3E-06 51.2 13.1 125 41-187 295-443 (563)
363 PRK12823 benD 1,6-dihydroxycyc 95.0 0.76 1.7E-05 43.1 14.2 75 41-119 8-94 (260)
364 PLN00203 glutamyl-tRNA reducta 95.0 0.14 3.1E-06 54.3 10.0 74 40-120 265-340 (519)
365 PRK14175 bifunctional 5,10-met 95.0 0.074 1.6E-06 52.2 7.2 59 38-121 155-213 (286)
366 TIGR01724 hmd_rel H2-forming N 95.0 0.21 4.6E-06 49.8 10.3 66 42-117 1-89 (341)
367 TIGR01327 PGDH D-3-phosphoglyc 94.9 0.11 2.4E-06 55.2 9.0 93 40-158 137-229 (525)
368 PRK08589 short chain dehydroge 94.9 0.79 1.7E-05 43.7 14.2 113 41-159 6-141 (272)
369 COG0136 Asd Aspartate-semialde 94.9 0.1 2.2E-06 52.1 8.1 73 41-118 1-75 (334)
370 TIGR00036 dapB dihydrodipicoli 94.9 0.028 6.1E-07 54.5 4.1 150 41-219 1-158 (266)
371 PRK09072 short chain dehydroge 94.9 0.47 1E-05 44.8 12.4 114 41-159 5-139 (263)
372 PRK12935 acetoacetyl-CoA reduc 94.9 0.68 1.5E-05 43.0 13.4 115 41-159 6-143 (247)
373 PRK06139 short chain dehydroge 94.9 0.41 9E-06 47.6 12.5 77 40-120 6-95 (330)
374 KOG1430 C-3 sterol dehydrogena 94.9 0.2 4.3E-06 50.8 10.2 108 40-149 3-117 (361)
375 PRK06598 aspartate-semialdehyd 94.9 0.11 2.3E-06 52.8 8.3 72 41-118 1-74 (369)
376 PRK09135 pteridine reductase; 94.9 0.33 7.1E-06 44.9 11.1 104 41-147 6-129 (249)
377 PRK08219 short chain dehydroge 94.9 0.21 4.5E-06 45.7 9.6 111 41-158 3-128 (227)
378 PRK08277 D-mannonate oxidoredu 94.8 0.78 1.7E-05 43.6 14.0 75 41-119 10-97 (278)
379 PRK12742 oxidoreductase; Provi 94.8 0.21 4.7E-06 46.0 9.8 34 41-76 6-39 (237)
380 PRK07454 short chain dehydroge 94.8 0.81 1.8E-05 42.4 13.7 78 40-121 5-95 (241)
381 PRK14027 quinate/shikimate deh 94.8 0.14 3E-06 50.2 8.8 76 39-117 125-202 (283)
382 TIGR01082 murC UDP-N-acetylmur 94.8 0.23 5E-06 51.4 10.9 125 43-180 1-128 (448)
383 COG1179 Dinucleotide-utilizing 94.8 0.042 9.2E-07 52.4 4.9 60 3-77 5-64 (263)
384 PRK00258 aroE shikimate 5-dehy 94.8 0.14 2.9E-06 49.9 8.6 76 39-122 121-198 (278)
385 TIGR01470 cysG_Nterm siroheme 94.8 0.32 6.9E-06 45.4 10.8 72 41-120 9-80 (205)
386 PRK05993 short chain dehydroge 94.8 0.13 2.8E-06 49.3 8.4 108 42-158 5-134 (277)
387 PRK05872 short chain dehydroge 94.8 0.54 1.2E-05 45.6 12.8 114 40-158 8-142 (296)
388 PRK07023 short chain dehydroge 94.8 0.18 3.9E-06 47.0 9.1 35 41-77 1-35 (243)
389 TIGR01963 PHB_DH 3-hydroxybuty 94.8 0.52 1.1E-05 43.8 12.3 75 42-120 2-89 (255)
390 PRK06500 short chain dehydroge 94.8 0.87 1.9E-05 42.2 13.8 111 41-158 6-136 (249)
391 PRK07060 short chain dehydroge 94.8 0.24 5.2E-06 45.9 9.9 113 40-158 8-136 (245)
392 PRK09009 C factor cell-cell si 94.7 1.4 3.1E-05 40.5 15.1 72 42-121 1-79 (235)
393 PRK13940 glutamyl-tRNA reducta 94.7 0.084 1.8E-06 54.5 7.2 76 39-121 179-254 (414)
394 PRK12320 hypothetical protein; 94.7 0.22 4.8E-06 54.6 10.8 98 42-158 1-101 (699)
395 PRK07035 short chain dehydroge 94.7 0.52 1.1E-05 44.0 12.1 114 41-158 8-144 (252)
396 PRK06935 2-deoxy-D-gluconate 3 94.7 0.56 1.2E-05 44.1 12.4 116 40-159 14-150 (258)
397 PLN02494 adenosylhomocysteinas 94.7 0.21 4.5E-06 52.3 10.0 95 39-164 252-347 (477)
398 PF03059 NAS: Nicotianamine sy 94.7 0.15 3.2E-06 49.9 8.4 104 40-156 120-228 (276)
399 PRK15438 erythronate-4-phospha 94.7 0.12 2.6E-06 52.8 8.0 93 39-158 114-207 (378)
400 COG0771 MurD UDP-N-acetylmuram 94.6 0.18 3.9E-06 52.5 9.5 127 41-178 7-137 (448)
401 PTZ00075 Adenosylhomocysteinas 94.6 0.16 3.6E-06 53.1 9.2 92 38-160 251-343 (476)
402 PRK04308 murD UDP-N-acetylmura 94.6 0.2 4.3E-06 51.8 9.9 127 41-175 5-135 (445)
403 PRK06949 short chain dehydroge 94.6 0.35 7.6E-06 45.2 10.8 77 40-120 8-97 (258)
404 PRK03659 glutathione-regulated 94.6 0.096 2.1E-06 56.6 7.8 138 41-210 400-542 (601)
405 cd05212 NAD_bind_m-THF_DH_Cycl 94.6 0.13 2.8E-06 45.2 7.2 57 39-120 26-82 (140)
406 cd01484 E1-2_like Ubiquitin ac 94.6 0.13 2.9E-06 48.9 7.9 33 43-77 1-33 (234)
407 PRK12749 quinate/shikimate deh 94.6 0.22 4.7E-06 49.0 9.6 76 39-117 122-204 (288)
408 PRK00141 murD UDP-N-acetylmura 94.6 0.21 4.6E-06 52.3 10.1 125 39-175 13-146 (473)
409 PRK14189 bifunctional 5,10-met 94.6 0.11 2.3E-06 51.0 7.3 78 39-161 156-234 (285)
410 PRK07097 gluconate 5-dehydroge 94.6 1.4 3E-05 41.7 14.8 117 40-161 9-148 (265)
411 PRK12743 oxidoreductase; Provi 94.6 0.98 2.1E-05 42.5 13.7 114 42-159 3-140 (256)
412 TIGR01850 argC N-acetyl-gamma- 94.6 0.12 2.6E-06 52.0 7.8 73 42-117 1-76 (346)
413 COG0289 DapB Dihydrodipicolina 94.5 0.24 5.2E-06 47.9 9.3 73 41-116 2-76 (266)
414 PRK08324 short chain dehydroge 94.5 0.53 1.2E-05 51.5 13.4 113 41-158 422-557 (681)
415 PRK06701 short chain dehydroge 94.5 1.2 2.6E-05 43.2 14.5 117 39-159 44-182 (290)
416 PRK08628 short chain dehydroge 94.5 1.2 2.5E-05 41.8 14.1 114 41-158 7-139 (258)
417 PRK06940 short chain dehydroge 94.5 0.7 1.5E-05 44.3 12.7 111 42-158 2-125 (275)
418 PRK14874 aspartate-semialdehyd 94.5 0.09 1.9E-06 52.6 6.7 71 41-118 1-72 (334)
419 PRK05599 hypothetical protein; 94.5 0.61 1.3E-05 43.8 12.1 115 42-160 1-138 (246)
420 PRK13581 D-3-phosphoglycerate 94.5 0.13 2.9E-06 54.6 8.3 93 40-159 139-231 (526)
421 cd01486 Apg7 Apg7 is an E1-lik 94.5 0.1 2.2E-06 51.6 6.9 33 43-77 1-33 (307)
422 PRK08862 short chain dehydroge 94.5 1.2 2.5E-05 41.7 13.8 115 41-159 5-144 (227)
423 cd01489 Uba2_SUMO Ubiquitin ac 94.5 0.13 2.8E-06 51.2 7.6 33 43-77 1-33 (312)
424 PRK12548 shikimate 5-dehydroge 94.5 0.25 5.5E-06 48.3 9.7 76 40-117 125-207 (289)
425 PRK00257 erythronate-4-phospha 94.5 0.13 2.9E-06 52.5 7.9 93 39-158 114-207 (381)
426 PRK06200 2,3-dihydroxy-2,3-dih 94.4 0.16 3.5E-06 48.0 8.0 36 40-77 5-40 (263)
427 PRK08936 glucose-1-dehydrogena 94.4 1.1 2.4E-05 42.1 13.7 116 40-159 6-145 (261)
428 PRK06436 glycerate dehydrogena 94.4 0.17 3.8E-06 50.0 8.4 96 39-164 120-217 (303)
429 PRK14852 hypothetical protein; 94.4 0.11 2.4E-06 58.5 7.7 75 41-117 332-430 (989)
430 PRK12746 short chain dehydroge 94.4 1.7 3.6E-05 40.6 14.8 114 41-158 6-146 (254)
431 PRK14179 bifunctional 5,10-met 94.4 0.12 2.6E-06 50.7 7.1 77 39-160 156-233 (284)
432 PRK08217 fabG 3-ketoacyl-(acyl 94.4 1.8 3.8E-05 40.1 14.9 35 41-77 5-39 (253)
433 PRK01710 murD UDP-N-acetylmura 94.4 0.29 6.3E-06 50.9 10.4 124 41-175 14-142 (458)
434 PRK05671 aspartate-semialdehyd 94.4 0.085 1.9E-06 52.9 6.2 72 40-118 3-75 (336)
435 PRK08264 short chain dehydroge 94.3 0.92 2E-05 41.9 12.8 113 40-160 5-134 (238)
436 PRK08263 short chain dehydroge 94.3 0.17 3.7E-06 48.3 7.9 34 42-77 4-37 (275)
437 TIGR01745 asd_gamma aspartate- 94.3 0.16 3.5E-06 51.5 8.0 71 42-118 1-73 (366)
438 TIGR00518 alaDH alanine dehydr 94.3 0.12 2.6E-06 52.5 7.1 78 38-121 164-242 (370)
439 PRK14173 bifunctional 5,10-met 94.3 0.14 3.1E-06 50.2 7.3 58 39-121 153-210 (287)
440 PRK12824 acetoacetyl-CoA reduc 94.2 0.9 1.9E-05 41.9 12.5 113 42-159 3-139 (245)
441 PRK07985 oxidoreductase; Provi 94.2 1.4 3E-05 42.8 14.3 115 41-159 49-186 (294)
442 TIGR01692 HIBADH 3-hydroxyisob 94.2 0.17 3.7E-06 49.2 7.9 60 46-117 1-60 (288)
443 TIGR00936 ahcY adenosylhomocys 94.2 0.31 6.6E-06 50.2 10.0 91 39-160 193-284 (406)
444 PRK05476 S-adenosyl-L-homocyst 94.2 0.33 7.2E-06 50.3 10.2 92 39-161 210-302 (425)
445 PRK07877 hypothetical protein; 94.2 0.14 2.9E-06 56.5 7.8 75 41-117 107-204 (722)
446 COG2344 AT-rich DNA-binding pr 94.2 0.2 4.4E-06 46.1 7.6 101 37-165 80-184 (211)
447 PRK14190 bifunctional 5,10-met 94.2 0.15 3.2E-06 50.1 7.2 58 39-121 156-213 (284)
448 PRK06114 short chain dehydroge 94.2 0.55 1.2E-05 44.1 11.0 77 41-121 8-98 (254)
449 COG1052 LdhA Lactate dehydroge 94.2 0.23 5E-06 49.6 8.7 93 38-158 143-236 (324)
450 PRK08177 short chain dehydroge 94.1 0.18 3.9E-06 46.5 7.6 35 41-77 1-35 (225)
451 PLN02383 aspartate semialdehyd 94.1 0.098 2.1E-06 52.7 6.1 73 39-118 5-78 (344)
452 PLN03129 NADP-dependent malic 94.1 0.14 3.1E-06 54.6 7.5 103 41-161 321-439 (581)
453 PRK07109 short chain dehydroge 94.1 1.4 2.9E-05 43.9 14.2 113 41-158 8-143 (334)
454 PLN02968 Probable N-acetyl-gam 94.1 0.15 3.2E-06 52.1 7.4 77 38-118 35-113 (381)
455 TIGR01087 murD UDP-N-acetylmur 94.1 0.23 5.1E-06 51.0 9.0 122 43-175 1-127 (433)
456 PRK05557 fabG 3-ketoacyl-(acyl 94.1 0.59 1.3E-05 43.0 10.9 115 40-158 4-141 (248)
457 PRK10792 bifunctional 5,10-met 94.0 0.19 4.1E-06 49.3 7.6 78 39-161 157-235 (285)
458 TIGR00465 ilvC ketol-acid redu 94.0 0.15 3.4E-06 50.6 7.2 66 40-117 2-67 (314)
459 cd01488 Uba3_RUB Ubiquitin act 94.0 0.25 5.4E-06 48.7 8.5 33 43-77 1-33 (291)
460 PRK06398 aldose dehydrogenase; 94.0 0.1 2.2E-06 49.5 5.6 35 41-77 6-40 (258)
461 PRK05693 short chain dehydroge 94.0 0.24 5.3E-06 47.1 8.3 35 41-77 1-35 (274)
462 PRK06125 short chain dehydroge 93.9 3 6.4E-05 39.2 15.6 114 41-158 7-139 (259)
463 PLN02306 hydroxypyruvate reduc 93.9 0.34 7.4E-06 49.6 9.6 102 39-158 163-272 (386)
464 PF04321 RmlD_sub_bind: RmlD s 93.9 0.06 1.3E-06 52.4 4.0 98 42-158 1-100 (286)
465 PRK14177 bifunctional 5,10-met 93.9 0.18 3.9E-06 49.4 7.2 59 38-121 156-214 (284)
466 PRK07792 fabG 3-ketoacyl-(acyl 93.9 0.73 1.6E-05 45.0 11.6 79 40-122 11-102 (306)
467 PRK14176 bifunctional 5,10-met 93.8 0.19 4.2E-06 49.3 7.3 58 39-121 162-219 (287)
468 PRK06523 short chain dehydroge 93.8 0.08 1.7E-06 49.8 4.6 36 40-77 8-43 (260)
469 TIGR01381 E1_like_apg7 E1-like 93.8 0.19 4.1E-06 54.3 7.8 36 40-77 337-372 (664)
470 PRK12747 short chain dehydroge 93.8 2.1 4.5E-05 40.0 14.2 33 41-75 4-36 (252)
471 TIGR01830 3oxo_ACP_reduc 3-oxo 93.8 0.55 1.2E-05 43.1 10.1 112 44-159 1-135 (239)
472 PRK05786 fabG 3-ketoacyl-(acyl 93.8 0.47 1E-05 43.8 9.7 35 41-77 5-39 (238)
473 PTZ00317 NADP-dependent malic 93.8 0.48 1E-05 50.5 10.6 104 41-162 297-420 (559)
474 PRK12745 3-ketoacyl-(acyl-carr 93.8 0.92 2E-05 42.3 11.8 75 42-120 3-91 (256)
475 PRK14193 bifunctional 5,10-met 93.8 0.2 4.2E-06 49.2 7.3 60 39-121 156-215 (284)
476 PRK14170 bifunctional 5,10-met 93.7 0.19 4.2E-06 49.2 7.1 58 39-121 155-212 (284)
477 PRK07201 short chain dehydroge 93.7 0.82 1.8E-05 49.3 12.6 114 40-158 370-508 (657)
478 PRK00436 argC N-acetyl-gamma-g 93.7 0.22 4.9E-06 50.0 7.7 74 41-117 2-76 (343)
479 PRK08703 short chain dehydroge 93.7 1.7 3.7E-05 40.2 13.3 35 41-77 6-40 (239)
480 TIGR03693 ocin_ThiF_like putat 93.7 0.81 1.7E-05 49.3 12.0 82 38-121 126-216 (637)
481 PRK09134 short chain dehydroge 93.6 1 2.2E-05 42.3 11.8 114 40-157 8-144 (258)
482 PRK04663 murD UDP-N-acetylmura 93.6 0.6 1.3E-05 48.2 11.0 125 41-175 7-133 (438)
483 PRK02472 murD UDP-N-acetylmura 93.6 0.59 1.3E-05 48.1 11.0 124 41-175 5-133 (447)
484 PRK14172 bifunctional 5,10-met 93.6 0.23 4.9E-06 48.6 7.4 58 39-121 156-213 (278)
485 PRK14186 bifunctional 5,10-met 93.6 0.2 4.4E-06 49.4 7.1 59 38-121 155-213 (297)
486 PRK15409 bifunctional glyoxyla 93.6 0.34 7.4E-06 48.3 8.8 93 39-159 143-237 (323)
487 PRK06953 short chain dehydroge 93.6 0.33 7.2E-06 44.6 8.2 112 41-158 1-129 (222)
488 COG0002 ArgC Acetylglutamate s 93.6 0.15 3.3E-06 51.1 6.2 75 40-117 1-78 (349)
489 PRK04690 murD UDP-N-acetylmura 93.6 0.58 1.3E-05 48.9 10.9 126 41-176 8-141 (468)
490 TIGR01408 Ube1 ubiquitin-activ 93.5 0.59 1.3E-05 53.5 11.5 73 42-117 25-118 (1008)
491 PRK08642 fabG 3-ketoacyl-(acyl 93.5 0.92 2E-05 42.2 11.2 34 41-76 5-38 (253)
492 PRK06463 fabG 3-ketoacyl-(acyl 93.5 0.84 1.8E-05 42.8 11.0 110 41-158 7-137 (255)
493 PRK06719 precorrin-2 dehydroge 93.5 0.69 1.5E-05 41.2 9.8 68 40-118 12-79 (157)
494 PRK07577 short chain dehydroge 93.5 0.33 7.1E-06 44.7 8.0 35 41-77 3-37 (234)
495 PRK06153 hypothetical protein; 93.5 0.094 2E-06 53.5 4.6 35 41-77 176-210 (393)
496 PF00106 adh_short: short chai 93.5 0.87 1.9E-05 39.5 10.3 115 43-161 2-137 (167)
497 PRK14169 bifunctional 5,10-met 93.5 0.22 4.9E-06 48.7 7.1 58 39-121 154-211 (282)
498 PRK14187 bifunctional 5,10-met 93.5 0.25 5.5E-06 48.6 7.4 59 38-121 157-215 (294)
499 PRK03803 murD UDP-N-acetylmura 93.4 0.49 1.1E-05 48.9 10.0 127 41-175 6-133 (448)
500 COG0373 HemA Glutamyl-tRNA red 93.4 0.42 9E-06 49.3 9.2 75 39-121 176-250 (414)
No 1
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=7e-77 Score=558.26 Aligned_cols=339 Identities=67% Similarity=1.017 Sum_probs=319.5
Q ss_pred hhHHHHHHhccCCCccchhhhhhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhc
Q 016424 8 NQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH 87 (390)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~ 87 (390)
++++.|.++++-+. ...+.+...+++.||+|+||+|+||++++++|+++|++++|.|||+..+.|++.||+|
T Consensus 3 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSH 74 (345)
T KOG1494|consen 3 LKSLIRSSASLSSG--------PKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSH 74 (345)
T ss_pred hHHHHHhhhhhccC--------CcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccc
Confidence 57788888887651 1112222478889999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHH
Q 016424 88 MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI 167 (390)
Q Consensus 88 ~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i 167 (390)
+++...+.+|+|..++++|+++||+|||.||+||||||+|+||++.|+.|+++++.++.++||+|.+.++|||+|.++|+
T Consensus 75 I~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPI 154 (345)
T KOG1494|consen 75 INTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPI 154 (345)
T ss_pred cCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCceeecccccHHHHHHHHHHHhCCCC-CCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHh
Q 016424 168 AAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 246 (390)
Q Consensus 168 ~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p-~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~ 246 (390)
++|++++++.|+|+|+||+|+||++|+++|+++.++++| ++++++|+|+|.+.|++|++||+++...+++++++.++.|
T Consensus 155 aaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~R 234 (345)
T KOG1494|consen 155 AAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHR 234 (345)
T ss_pred HHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 5699999999999999999999999999999999999999
Q ss_pred hccchhhhHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCC
Q 016424 247 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLN 326 (390)
Q Consensus 247 v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls 326 (390)
+|.+|+||+++|+|+||+++|||+|.++|+++++++.+|++.++.|+|+.+...+-.||++|+++|++||+++..+++||
T Consensus 235 iQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~ls 314 (345)
T KOG1494|consen 235 IQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLS 314 (345)
T ss_pred HHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccC
Confidence 99999999999999999999999999999999999999988899999998887678999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhcccchhcchHhHHHh
Q 016424 327 EYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLLQQEM 365 (390)
Q Consensus 327 ~~E~~~L~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~ 365 (390)
++|+++|+.+. ++|+++ |+||+.|++..
T Consensus 315 d~E~~~l~~~~----~eLk~s-------I~KGv~F~~~~ 342 (345)
T KOG1494|consen 315 DYEEKALEAAK----PELKKS-------IEKGVTFVKST 342 (345)
T ss_pred HHHHHHHHHHH----HHHHHH-------HHhhHHHHhhh
Confidence 99999999877 899999 99999999864
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=4.1e-69 Score=528.60 Aligned_cols=310 Identities=58% Similarity=0.927 Sum_probs=281.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCC
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK 122 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~k 122 (390)
||+||||+|+||++++++|+.+++++||+|+|++++.|+++||+|......++.+++.+|++++++|||+||+++|.||+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999999999999999999999999999999998889999999987444666543333567999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHHHHHh
Q 016424 123 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 202 (390)
Q Consensus 123 ~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l 202 (390)
|||+|+|++..|+++++++++.|.+++|++++|++|||+|++++++++++++.++||++||||+|+||++||+++||+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHHHcc
Q 016424 203 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 282 (390)
Q Consensus 203 ~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl~~ 282 (390)
|++|++|+++||||||+++++|+||+++....+++++++++.++++++|++|+++|.|||+|+||+|.++++++++|+++
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~ 240 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence 99999999999999987689999999986444666678999999999999999987688999999999999999999976
Q ss_pred cCCCCceEEEeeeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhhhhhcccchhcchHh
Q 016424 283 LRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGHLL 361 (390)
Q Consensus 283 ~~~~~~v~~~s~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~~~~v~~~~~~~~~~ 361 (390)
.++++.++|+++++|+| .+++|||+||++|++||++++++++|+++|+++|+.++ +.+++. +++|++|
T Consensus 241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~----~~i~~~-------~~~g~~~ 309 (312)
T TIGR01772 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGAL----PELKKN-------IKKGEEF 309 (312)
T ss_pred hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHH----HHHHHH-------HHHHHHH
Confidence 55556799988999998 67999999999999999999995489999999999999 455555 6788888
Q ss_pred HH
Q 016424 362 QQ 363 (390)
Q Consensus 362 ~~ 363 (390)
++
T Consensus 310 ~~ 311 (312)
T TIGR01772 310 VA 311 (312)
T ss_pred hc
Confidence 75
No 3
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.7e-68 Score=523.62 Aligned_cols=299 Identities=68% Similarity=1.068 Sum_probs=273.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~ 121 (390)
|||+||||+|+||+++++.|+.+++++||+|+|++.+.|+++||+|+.....++.+.+++|++++++|||+||+|+|.||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 69999999999999999999999999999999998678999999999754567754344567799999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHHHHH
Q 016424 122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 201 (390)
Q Consensus 122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la~~ 201 (390)
+|||+|+|++..|+++++++++.|.+++|++|+|++|||+|++++++++++++.++||++||||+|+||++|++++||++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hCCCCCCCceEEeecc-cCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHHH
Q 016424 202 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 280 (390)
Q Consensus 202 l~v~p~~V~~~ViG~H-g~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl 280 (390)
+|+++++|+++||||| |+ +++|+||++.+...+++++++++.++++++|++|++.|.|||+|+||+|.++++++++|+
T Consensus 161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl 239 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL 239 (310)
T ss_pred hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999 77 999999999875556666789999999999999999877889999999999999999999
Q ss_pred cccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424 281 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ 341 (390)
Q Consensus 281 ~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~ 341 (390)
+|.++++.+++|++++++-.+++|||+||++|++|+++++++++|+++|+++|++++..|+
T Consensus 240 ~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~ 300 (310)
T cd01337 240 RGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELK 300 (310)
T ss_pred HhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 8876666788888877653568999999999999999999963599999999999995443
No 4
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=8.5e-67 Score=507.74 Aligned_cols=291 Identities=37% Similarity=0.550 Sum_probs=262.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
+||+|||| |+||++++++|.++++.+||+|||+++ ++|.++||+|+.+. ..+++.. +.+ +++++|||+||+++
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence 59999999 999999999997788888999999997 79999999998743 3455542 245 58899999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHH
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 196 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~ 196 (390)
|.||||||+|+||+..|+.|+++++++|.++|||++++++|||+|++||++ ++.+++|++|+||. |.||++||++
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~ 153 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT 153 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876 88999999999999 8999999999
Q ss_pred HHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-------C-CCHHHHHHHHHhhccchhhhHhhhccCCchhHHH
Q 016424 197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-------S-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268 (390)
Q Consensus 197 ~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-------~-~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~ 268 (390)
+||+++|+++++|+++|+|+||+ +++|+||++++.+ . .++++++++.++|+++|++|+++| |.| |+||+
T Consensus 154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~ 230 (313)
T COG0039 154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230 (313)
T ss_pred HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence 99999999999999999999999 9999999999854 1 334678899999999999999988 555 99999
Q ss_pred HHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHh
Q 016424 269 AYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGE 346 (390)
Q Consensus 269 A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~ 346 (390)
|.|+++++++|++|.+ .++|++ |++|+| .+++||++|+++|++|+++++++ +|+++|+++|+.++..++..++.
T Consensus 231 A~a~a~~~~ail~d~~---~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~ 306 (313)
T COG0039 231 AAALARMVEAILRDEK---RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIEL 306 (313)
T ss_pred HHHHHHHHHHHHcCCC---ceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999873 588887 899999 78999999999999999999996 99999999999999544444433
No 5
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=1.1e-64 Score=499.10 Aligned_cols=316 Identities=76% Similarity=1.164 Sum_probs=286.9
Q ss_pred hhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC
Q 016424 30 QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG 109 (390)
Q Consensus 30 ~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d 109 (390)
.+.|+..++.++.||+||||+|+||+++++.|+++++++||+|+|++++.++++||+|+.....++.+++++|++++++|
T Consensus 7 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~ 86 (323)
T PLN00106 7 LRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKG 86 (323)
T ss_pred hhccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCC
Confidence 45666666778889999999999999999999999999999999999888999999998865577765567788999999
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccc
Q 016424 110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML 189 (390)
Q Consensus 110 ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~L 189 (390)
||+||+++|.|++||++|++++..|+.+++++++++.+++|+++++++|||+|.+++++++++++.+++||+|+||+|.|
T Consensus 87 aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~L 166 (323)
T PLN00106 87 ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL 166 (323)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999777777777899999999999999889
Q ss_pred cHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHH
Q 016424 190 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 269 (390)
Q Consensus 190 ds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A 269 (390)
|++||++++|+++|+++.+|+++|+||||+++++|+||++.+...+++++++++.++++++|++|++.|.|||+|+||+|
T Consensus 167 Ds~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a 246 (323)
T PLN00106 167 DVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMA 246 (323)
T ss_pred hHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHH
Confidence 99999999999999999999999999997769999999997654466777999999999999999997657899999999
Q ss_pred HHHHHHHHHHHcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHH
Q 016424 270 YAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLG 345 (390)
Q Consensus 270 ~a~~~lv~aIl~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~ 345 (390)
.++++++++|++|+++++.++||++++++|.+++|||+||+||++|+++++++++|+++|+++|+.++..|++.++
T Consensus 247 ~a~~~ii~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 247 YAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998877777999998887764349999999999999999999659999999999999976665543
No 6
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=7.8e-64 Score=490.89 Aligned_cols=285 Identities=25% Similarity=0.368 Sum_probs=257.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-C--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-G--AVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~--~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
||+|||| |+||++++++|+.+++++||+|+|+++ ++|+++||+|... . ..+++++ +| +++++|||+||+|+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence 8999999 999999999999999999999999988 7999999999653 2 2566654 45 58899999999999
Q ss_pred CCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424 118 GVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 194 (390)
Q Consensus 118 g~p~k~g~~--r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~ 194 (390)
|.||||||+ |+|++..|+++++++++.|.+++|++++|++|||+|++|+++ ++.++||++||||+ |.||++||
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence 999999999 699999999999999999999999999999999999999866 78889999999999 89999999
Q ss_pred HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC----------CCHHHHHHHHHhhccchhhhHhhhccCCch
Q 016424 195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264 (390)
Q Consensus 195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~----------~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t 264 (390)
+++||+++|++|++|+++||||||+ +++|+||++++.+. .++.+++++.++++++|++|++. ||+|
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---KG~t 228 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR---KGWT 228 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHc---cCee
Confidence 9999999999999999999999998 99999999987531 12335789999999999999994 5899
Q ss_pred hHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHH
Q 016424 265 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQD 342 (390)
Q Consensus 265 ~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~ 342 (390)
+|++|.++++++++|++|.+ .+++++ +++|+| ++++|||+||+||++|+++++++ +|+++|+++|++++..|++
T Consensus 229 ~~~ia~a~~~ii~ail~d~~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~ 304 (307)
T cd05290 229 NAGIAKSASRLIKAILLDER---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRE 304 (307)
T ss_pred hHHHHHHHHHHHHHHHhCCC---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998754 488886 789999 67999999999999999999996 9999999999999965554
Q ss_pred H
Q 016424 343 W 343 (390)
Q Consensus 343 ~ 343 (390)
.
T Consensus 305 ~ 305 (307)
T cd05290 305 T 305 (307)
T ss_pred H
Confidence 3
No 7
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=6.5e-63 Score=486.21 Aligned_cols=314 Identities=60% Similarity=0.927 Sum_probs=278.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.-++.||+||||+|+||+++++.|+.++..+||+|+|++.+.++++||+|......+..++...+.+++++|||+||+++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 45678999999999999999999999999999999999558999999999775444554322134368999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHH
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF 197 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~ 197 (390)
|.|+++|++|.+++..|++++++++++|.+++|+++++++|||+|++++++.+.+++.+++||+|+||+++|||+||+++
T Consensus 85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~ 164 (321)
T PTZ00325 85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKF 164 (321)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765567899999999999978999999999
Q ss_pred HHHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHH
Q 016424 198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD 277 (390)
Q Consensus 198 la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~ 277 (390)
||+++|++|++|+++||||||+.+++|+||++.. ++++++++++.++++++|++|++.|+|||+|+||+|++++++++
T Consensus 165 la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~--~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ 242 (321)
T PTZ00325 165 VAEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGL--SLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWST 242 (321)
T ss_pred HHHHhCcChhheEEEEEeecCCcccccchhccCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH
Confidence 9999999999999999999998569999999944 46677799999999999999999887789999999999999999
Q ss_pred HHHcccCCCCceEEEeeeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhhhhhcccchh
Q 016424 278 ACLRGLRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHS 356 (390)
Q Consensus 278 aIl~~~~~~~~v~~~s~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~~~~v~~~~~ 356 (390)
+|++|.++++.++++++++|+| .+++|+|+||+||++|+++++++++|+++|+++|+.++. .+++. ++
T Consensus 243 ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~----~i~~~-------~~ 311 (321)
T PTZ00325 243 SVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVP----DLKKN-------IE 311 (321)
T ss_pred HHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHH----HHHHH-------HH
Confidence 9998865566788999999999 579999999999999999999833999999999999995 44444 56
Q ss_pred cchHhHHH
Q 016424 357 KGHLLQQE 364 (390)
Q Consensus 357 ~~~~~~~~ 364 (390)
+|+.|++.
T Consensus 312 ~~~~~~~~ 319 (321)
T PTZ00325 312 KGLEFARK 319 (321)
T ss_pred HHHHHHhc
Confidence 77777764
No 8
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-62 Score=482.98 Aligned_cols=309 Identities=55% Similarity=0.850 Sum_probs=276.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh-CCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~-~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
|||+||||+|+||+++++.+.. .+...+|+|+|+++ ..++++|++|......++.+. .+|++++++|+|+||+++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~-~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFS-GEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeC-CCCHHHHcCCCCEEEEcCCC
Confidence 7999999999999999998866 57788999999987 678889999864223555422 45777999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHHH
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA 199 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~la 199 (390)
|+++|++|.+++.+|++++++++++|.+++|+++++++|||+|++|+++++.+++.+++|++||||+|+||++|++++||
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia 159 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999998899999999999
Q ss_pred HHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHH
Q 016424 200 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 279 (390)
Q Consensus 200 ~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aI 279 (390)
+++|++|++|+++||||||+++++|+||++ .+.++++++++++.++++++|++|+++|.|+|+|+||+|.++++++++|
T Consensus 160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai 238 (312)
T PRK05086 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238 (312)
T ss_pred HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence 999999999999999999877999999999 3335677779999999999999999987778999999999999999999
Q ss_pred HcccCCCCceEEEeeeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHHhhhhhcccchhcch
Q 016424 280 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLGESEERVSWKHSKGH 359 (390)
Q Consensus 280 l~~~~~~~~v~~~s~~~g~~~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~~~~~~v~~~~~~~~ 359 (390)
++++++++.++|+++++|+-.+++|||+||+||++|+++++++++|+++|+++|+.++. .+++. +++|.
T Consensus 239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~----~i~~~-------~~~g~ 307 (312)
T PRK05086 239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLD----TLKKD-------IALGE 307 (312)
T ss_pred HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHH----HHHHH-------HHHHH
Confidence 99876666799988887763468999999999999999999966999999999999994 55555 67777
Q ss_pred HhHH
Q 016424 360 LLQQ 363 (390)
Q Consensus 360 ~~~~ 363 (390)
.|.+
T Consensus 308 ~~~~ 311 (312)
T PRK05086 308 EFVN 311 (312)
T ss_pred Hhhc
Confidence 7765
No 9
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.2e-62 Score=483.72 Aligned_cols=290 Identities=23% Similarity=0.322 Sum_probs=259.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.+||+|||| |+||+++++.|+..++++||+|||+++ +.|+++||+|+.. ....++. +++|+ ++++|||+||+++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECC
Confidence 469999998 999999999999999999999999987 7999999999873 2212333 24576 5699999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHH
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 196 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~ 196 (390)
|.|++|||+|+|++.+|+++++++++.|+++||++|+|++|||+|++++++ ++.+++|++||||+ |.||++|+++
T Consensus 80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~~ 155 (312)
T cd05293 80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFRY 155 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998654 78889999999999 9999999999
Q ss_pred HHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhhHhhhccCCch
Q 016424 197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264 (390)
Q Consensus 197 ~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t 264 (390)
+||+++++++++|+++||||||+ +++|+||++++.+ ..++++++++.++++++|++|++. ||+|
T Consensus 156 ~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t 231 (312)
T cd05293 156 LIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKL---KGYT 231 (312)
T ss_pred HHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHh---cCCc
Confidence 99999999999999999999998 9999999998853 122355899999999999999994 5899
Q ss_pred hHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424 265 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ 341 (390)
Q Consensus 265 ~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~ 341 (390)
+|++|+++++++++|++|.+ .+++++ +++|+| +++++||+||+||++|+++++++ +|+++|+++|+.++..|+
T Consensus 232 ~~~~a~a~~~ii~ail~d~~---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~ 307 (312)
T cd05293 232 SWAIGLSVADLVDAILRNTG---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLW 307 (312)
T ss_pred hHHHHHHHHHHHHHHHcCCC---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence 99999999999999998764 477776 789988 47999999999999999999996 999999999999997666
Q ss_pred HHHH
Q 016424 342 DWLG 345 (390)
Q Consensus 342 ~~l~ 345 (390)
+.++
T Consensus 308 ~~~~ 311 (312)
T cd05293 308 EVQK 311 (312)
T ss_pred HHhh
Confidence 6553
No 10
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=1.8e-62 Score=483.94 Aligned_cols=293 Identities=27% Similarity=0.370 Sum_probs=258.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhh
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENAL 107 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al 107 (390)
+++.||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++|+++||+|+.+ ...+++. +++ ++++
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~ 77 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAF 77 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHh
Confidence 468899999988999999999999999999 999999954 6999999999872 1234443 234 6899
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhC-CCCCCceee
Q 016424 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLG 185 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kviG 185 (390)
+|||+||+|+|.||||||+|+|++..|+++++++++.|.++|| +++++++|||+|++|+++ ++.+ +||++||||
T Consensus 78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG 153 (323)
T TIGR01759 78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSA 153 (323)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEE
Confidence 9999999999999999999999999999999999999999998 999999999999999876 6778 999999999
Q ss_pred cccccHHHHHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCCC----C-CCHHH--HHHHHHhhccchhhhHhh
Q 016424 186 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----S-FTQEE--TEYLTNRIQNGGTEVVEA 257 (390)
Q Consensus 186 ~t~Lds~R~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~~----~-~~~~~--~~~l~~~v~~~~~eIi~~ 257 (390)
+|.||++|||++||+++|++|++|+ .+||||||+ +++|+||++++.+ . ++++. +++|.+++++++++|++.
T Consensus 154 ~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~ 232 (323)
T TIGR01759 154 MTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEA 232 (323)
T ss_pred eeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhc
Confidence 9999999999999999999999995 679999998 9999999998853 1 33333 689999999999999995
Q ss_pred hccCCchhH-HHHHHHHHHHHHHHcccCCCCceEEEe-eeeC-CC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHH
Q 016424 258 KAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYESG 331 (390)
Q Consensus 258 k~gkg~t~~-s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~~-l~~Ls~~E~~ 331 (390)
||+|+| ++|.++++++++|++|++. +.+++|+ +++| +| ++++|||+||++|++|++++++ + +|+++|++
T Consensus 233 ---kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~ 307 (323)
T TIGR01759 233 ---RGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRG 307 (323)
T ss_pred ---cCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHH
Confidence 478988 5889999999999998732 2489998 8899 88 4799999999999999999998 6 99999999
Q ss_pred HHHHhHHHHHHHH
Q 016424 332 LFCLLHLCFQDWL 344 (390)
Q Consensus 332 ~L~~~~~~i~~~l 344 (390)
+|+.++..|+...
T Consensus 308 ~l~~sa~~lk~~~ 320 (323)
T TIGR01759 308 KLDATEDELLEEK 320 (323)
T ss_pred HHHHHHHHHHHHH
Confidence 9999996554443
No 11
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=4.9e-62 Score=485.10 Aligned_cols=291 Identities=23% Similarity=0.358 Sum_probs=260.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
+||+|||| |+||+++++.|+.+++++||+|+|+++ +.|+++||+|+.. ....++.. ++|+ ++++|||+||+++|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-STDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-CCCH-HHhCCCCEEEECCC
Confidence 79999999 999999999999999999999999988 7999999999863 22344432 3465 67999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHH
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF 197 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~ 197 (390)
.||+|||+|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++ ++.++||++||||+ |.||++|++++
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999765 67778999999999 68999999999
Q ss_pred HHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhhHhhhccCCchh
Q 016424 198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265 (390)
Q Consensus 198 la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~ 265 (390)
||+++|+++++|+++||||||+ +++|+||++++.+ .+++++++++.++++++|++|++. ||+|+
T Consensus 191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---KG~t~ 266 (350)
T PLN02602 191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKL---KGYTS 266 (350)
T ss_pred HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhc---CCccH
Confidence 9999999999999999999998 9999999997732 134456889999999999999994 58999
Q ss_pred HHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-C--CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424 266 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-T--ELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ 341 (390)
Q Consensus 266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~--~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~ 341 (390)
|++|.++++++++|++|.+ .+++++ +++|+| . +++|||+||+||++|+++++++ +|+++|+++|++++..|+
T Consensus 267 ~gia~a~a~ii~ail~d~~---~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~ 342 (350)
T PLN02602 267 WAIGYSVASLVRSLLRDQR---RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLW 342 (350)
T ss_pred HHHHHHHHHHHHHHHhcCC---CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999875 488998 679998 3 6899999999999999999996 999999999999997777
Q ss_pred HHHHhh
Q 016424 342 DWLGES 347 (390)
Q Consensus 342 ~~l~~~ 347 (390)
+.+++.
T Consensus 343 ~~~~~~ 348 (350)
T PLN02602 343 EVQSQL 348 (350)
T ss_pred HHHHHh
Confidence 665543
No 12
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=4.2e-61 Score=473.53 Aligned_cols=292 Identities=24% Similarity=0.389 Sum_probs=263.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC-CeEEEEeCCCChhhhhCCCcEEEE
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVII 115 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~-~~v~~~~~t~dl~~al~dADiVIi 115 (390)
++.+||+|||| |+||++++++|+..++++||+|+|+++ ++|+++||.|+... ..+++.+ ++ +++++|||+||+
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~-~~~~~~adivIi 79 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD-YSDCKDADLVVI 79 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC-HHHhCCCCEEEE
Confidence 45679999999 999999999999999999999999987 78999999998632 3556543 45 478999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 194 (390)
Q Consensus 116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~ 194 (390)
++|.||+|||+|.|++..|+++++++++.+.+++|++|++++|||+|++++++ ++.+++|++||||+ |.||++|+
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~ 155 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARF 155 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999998755 66789999999999 78999999
Q ss_pred HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-----------CCCHHHHHHHHHhhccchhhhHhhhccCCc
Q 016424 195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263 (390)
Q Consensus 195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~ 263 (390)
++++|+++|+++++|+++||||||+ +++|+||++++.+ .+++++++++.+++++++++|++. ||+
T Consensus 156 ~~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kg~ 231 (315)
T PRK00066 156 RYMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK---KGA 231 (315)
T ss_pred HHHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhc---CCe
Confidence 9999999999999999999999998 9999999998853 244567889999999999999994 589
Q ss_pred hhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424 264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ 341 (390)
Q Consensus 264 t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~ 341 (390)
++|++|+++++++++|+++.+ .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++++..|+
T Consensus 232 t~~~~a~~~~~i~~ail~~~~---~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~ 307 (315)
T PRK00066 232 TYYGIAMALARITKAILNNEN---AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLK 307 (315)
T ss_pred ehHHHHHHHHHHHHHHHcCCC---eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHH
Confidence 999999999999999999754 588887 789999 67999999999999999999996 999999999999997666
Q ss_pred HHHHh
Q 016424 342 DWLGE 346 (390)
Q Consensus 342 ~~l~~ 346 (390)
..+++
T Consensus 308 ~~~~~ 312 (315)
T PRK00066 308 EIMDE 312 (315)
T ss_pred HHHHH
Confidence 65543
No 13
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=1.5e-61 Score=473.43 Aligned_cols=280 Identities=24% Similarity=0.408 Sum_probs=252.7
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC--CeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424 46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (390)
Q Consensus 46 VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~al~dADiVIi~ag~p~ 121 (390)
|||+ |+||+++++.|+..++++||+|+|+++ ++|+++||+|+... ..+++.. +| +++++|||+||+++|.||
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS--GD-YSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec--CC-HHHHCCCCEEEECCCCCC
Confidence 6899 999999999999999999999999987 79999999998632 3455542 45 588999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHHHHH
Q 016424 122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200 (390)
Q Consensus 122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~la~ 200 (390)
+|||+|+|++.+|+++++++++.|.+++|++++|++|||+|++|+++ ++.+++|++||||+ |.||++|+++++|+
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~ 152 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE 152 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765 77889999999999 88999999999999
Q ss_pred HhCCCCCCCceEEeecccCceeeeccccCCCCC----CC-------CHHHHHHHHHhhccchhhhHhhhccCCchhHHHH
Q 016424 201 VLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----SF-------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 269 (390)
Q Consensus 201 ~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----~~-------~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A 269 (390)
++|++|++|+++||||||+ +++|+||++++.+ .+ ++.+++++.++++++|++|++. ||+|+|++|
T Consensus 153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kG~t~~~~a 228 (299)
T TIGR01771 153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINR---KGATYYGIG 228 (299)
T ss_pred HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhc---CCeeeHHHH
Confidence 9999999999999999998 9999999998743 11 2335789999999999999994 589999999
Q ss_pred HHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424 270 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ 341 (390)
Q Consensus 270 ~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~ 341 (390)
.++++++++|++|.+ .++||+ +++|+| .+++|||+||+||++|+++++++ +|+++|+++|++++..|+
T Consensus 229 ~a~~~~i~ail~d~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik 298 (299)
T TIGR01771 229 MAVARIVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLK 298 (299)
T ss_pred HHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHh
Confidence 999999999999864 589997 889999 56899999999999999999995 999999999999986543
No 14
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=6e-61 Score=448.80 Aligned_cols=292 Identities=22% Similarity=0.342 Sum_probs=265.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC---CCeEEEEeCCCChhhhhCCCcE
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDL 112 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~---~~~v~~~~~t~dl~~al~dADi 112 (390)
..+..||+|+|+ |.||.++++.+..+++.+||+|+|.++ ++|.+|||+|... .+++.. .+|+ .+.+|+|+
T Consensus 17 ~~~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~l 91 (332)
T KOG1495|consen 17 EFKHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKL 91 (332)
T ss_pred cccCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcE
Confidence 344679999999 999999999999999999999999998 8999999999762 355554 3575 77999999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccH
Q 016424 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV 191 (390)
Q Consensus 113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds 191 (390)
||+|||..+++|++|++++++|+.+++.+.+++.+|.||++++++|||+|++||++ |+.++||++||||. |+||+
T Consensus 92 vIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDs 167 (332)
T KOG1495|consen 92 VIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDS 167 (332)
T ss_pred EEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccH
Confidence 99999999999999999999999999999999999999999999999999999865 99999999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhhHhhhc
Q 016424 192 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKA 259 (390)
Q Consensus 192 ~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eIi~~k~ 259 (390)
+|||.+++++||++|+++++||+||||+ +.+|+||.+.+.+ ..+++.|+++-+++.+.++||++.|
T Consensus 168 aRFryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK- 245 (332)
T KOG1495|consen 168 ARFRYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK- 245 (332)
T ss_pred HHHHHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999999 8999999987632 3567789999999999999999975
Q ss_pred cCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHh
Q 016424 260 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLL 336 (390)
Q Consensus 260 gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~ 336 (390)
|+|.|++|..+++++++|++|++ .+.+++ .++|.| .+++|+|+||++|++|+..++.. +|+++|.++|.++
T Consensus 246 --GyTswaIglsva~l~~ail~n~~---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kS 319 (332)
T KOG1495|consen 246 --GYTSWAIGLSVADLAQAILRNLR---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKS 319 (332)
T ss_pred --CchHHHHHHHHHHHHHHHHhCcC---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHH
Confidence 89999999999999999999986 378887 679998 56999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHhhhhh
Q 016424 337 HLCFQDWLGESEER 350 (390)
Q Consensus 337 ~~~i~~~l~~~~~~ 350 (390)
+. .|.++++.
T Consensus 320 a~----tl~~~q~~ 329 (332)
T KOG1495|consen 320 AK----TLLEAQKS 329 (332)
T ss_pred HH----HHHHHHHh
Confidence 94 55555443
No 15
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-60 Score=468.35 Aligned_cols=294 Identities=22% Similarity=0.289 Sum_probs=257.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhh
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENAL 107 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al 107 (390)
++++||+||||+|.||+++++.|.+.++++ ||+|+|+++ ++|+++||+|+.+ ...+++. +++ ++++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~ 78 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAF 78 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHh
Confidence 578899999988999999999999999888 999999954 6899999999862 1345553 234 6899
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCceee
Q 016424 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLG 185 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kviG 185 (390)
+|||+||+++|.||+|||+|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++ ++.+ +||++||||
T Consensus 79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG 154 (326)
T PRK05442 79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTA 154 (326)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEe
Confidence 999999999999999999999999999999999999999988 8999999999999999876 5666 999999999
Q ss_pred cccccHHHHHHHHHHHhCCCCCCCceE-EeecccCceeeeccccCCCCCC-----CCHHH--HHHHHHhhccchhhhHhh
Q 016424 186 VTMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPCS-----FTQEE--TEYLTNRIQNGGTEVVEA 257 (390)
Q Consensus 186 ~t~Lds~R~~~~la~~l~v~p~~V~~~-ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~--~~~l~~~v~~~~~eIi~~ 257 (390)
+|.||++||+++||++|+++|++|+++ ||||||+ +++|+||++++.+. +++++ ++++.+++++++++|++.
T Consensus 155 ~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~ 233 (326)
T PRK05442 155 MTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEA 233 (326)
T ss_pred eeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhC
Confidence 999999999999999999999999986 5999999 99999999998641 33433 678999999999999994
Q ss_pred hccCCchhHHHHHH-HHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 016424 258 KAGAGSATLSMAYA-AVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333 (390)
Q Consensus 258 k~gkg~t~~s~A~a-~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L 333 (390)
||+|+|++|.+ +++++++|++|.+ ++.+++|+ +++|+| ++++|||+||++| +|+++++...+|+++|+++|
T Consensus 234 ---kG~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l 308 (326)
T PRK05442 234 ---RGASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKI 308 (326)
T ss_pred ---cCCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHH
Confidence 58999999999 5999999999852 22488998 679999 4899999999999 99999965239999999999
Q ss_pred HHhHHHHHHHHH
Q 016424 334 CLLHLCFQDWLG 345 (390)
Q Consensus 334 ~~~~~~i~~~l~ 345 (390)
++++..|+.+..
T Consensus 309 ~~s~~~l~~~~~ 320 (326)
T PRK05442 309 DATLAELEEERD 320 (326)
T ss_pred HHHHHHHHHHHH
Confidence 999965554443
No 16
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-59 Score=460.98 Aligned_cols=295 Identities=31% Similarity=0.497 Sum_probs=263.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC--CeEEEEeCCCChhhhhCCCcEEE
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI 114 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~al~dADiVI 114 (390)
.+.+||+|||| |+||+++++.++..++ .+|+|||+++ +.|.++|+.|.... ...++. +++|+ ++++|||+||
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEE
Confidence 45679999999 9999999999999886 6899999998 67999999997532 233433 24676 5899999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-cccHHH
Q 016424 115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVR 193 (390)
Q Consensus 115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~Lds~R 193 (390)
+++|.|+++||+|+|++..|.++++++++.|+++||++|+|++|||+|++++++ ++.+++|++|+||+| .||++|
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R 154 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSR 154 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHH
Confidence 999999999999999999999999999999999999999999999999998654 678899999999995 899999
Q ss_pred HHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccCCc
Q 016424 194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS 263 (390)
Q Consensus 194 ~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~ 263 (390)
++++||+++|++|++|+++|+||||+ +++|+||++++.+ .+++++++++.++++++|++|++++ |||+
T Consensus 155 ~~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~ 232 (319)
T PTZ00117 155 FRCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGS 232 (319)
T ss_pred HHHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCC
Confidence 99999999999999999999999998 9999999998742 2556678999999999999999976 7899
Q ss_pred hhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHH
Q 016424 264 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQ 341 (390)
Q Consensus 264 t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~ 341 (390)
|+||+|+++++++++|++|.+ .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|+
T Consensus 233 t~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~ 308 (319)
T PTZ00117 233 AFFAPAAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQ 308 (319)
T ss_pred hHHHHHHHHHHHHHHHhcCCC---eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHH
Confidence 999999999999999999764 589998 789999 46899999999999999999996 999999999999998777
Q ss_pred HHHHhh
Q 016424 342 DWLGES 347 (390)
Q Consensus 342 ~~l~~~ 347 (390)
+.+++.
T Consensus 309 ~~~~~~ 314 (319)
T PTZ00117 309 ELTQKA 314 (319)
T ss_pred HHHHHH
Confidence 666544
No 17
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=1.9e-59 Score=460.13 Aligned_cols=287 Identities=24% Similarity=0.372 Sum_probs=257.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
+||+|||+ |++|+++++.|+..++..+|+|+|+++ ++++++||.|+.. ...++... .++ +++++||+||+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~~-~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GDY-SDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CCH-HHhCCCCEEEEcc
Confidence 49999999 999999999999999888999999988 6899999999753 23344432 354 6799999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHH
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 196 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~ 196 (390)
|.||+|||+|.|++.+|+++++++++.|.++||++++|++|||+|++|+++ ++.++||++||||+ |.||++|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998755 67799999999999 7899999999
Q ss_pred HHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhhccCCchhH
Q 016424 197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266 (390)
Q Consensus 197 ~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~ 266 (390)
+||+++|+++++|+++|||+||+ +++|+||++++.+ .+.+++++++.++++++|++|++. ||+|+|
T Consensus 153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~t~~ 228 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIING---KGATYY 228 (306)
T ss_pred HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHc---cCccHH
Confidence 99999999999999999999998 9999999998743 133556889999999999999994 589999
Q ss_pred HHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHH
Q 016424 267 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWL 344 (390)
Q Consensus 267 s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l 344 (390)
++|.++++++++|+++.+ .+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++++..|++.+
T Consensus 229 ~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~ 304 (306)
T cd05291 229 GIATALARIVKAILNDEN---AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENI 304 (306)
T ss_pred HHHHHHHHHHHHHHcCCC---EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999754 588887 789999 67999999999999999999996 999999999999997666554
No 18
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=2e-59 Score=458.95 Aligned_cols=285 Identities=28% Similarity=0.411 Sum_probs=256.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCC-CeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~-~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
|+|||+ |+||+++++.++.+++++||+|+|+++ +.|+++||+|+... ...+++. ++| +++++|||+||+++|.|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence 689999 999999999999999999999999988 79999999998643 3344443 346 47899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHHHH
Q 016424 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVA 199 (390)
Q Consensus 121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~la 199 (390)
++|||+|.+++.+|+++++++++.|+++||++|+|++|||+|++++++ ++++++|++||||+ |.||++|+++++|
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la 153 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA 153 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754 78889999999999 7899999999999
Q ss_pred HHhCCCCCCCceEEeecccCceeeeccccCCCCC-C------CCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHH
Q 016424 200 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA 272 (390)
Q Consensus 200 ~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-~------~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~ 272 (390)
+++++++++|+++|+||||+ +++|+||++++.+ + .+++.++++.+++++++++|++. ||+++|++|.++
T Consensus 154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~---kg~t~~~~a~a~ 229 (300)
T cd00300 154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRL---KGATNYGIATAI 229 (300)
T ss_pred HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHc---cCcchHHHHHHH
Confidence 99999999999999999998 9999999998753 1 13456889999999999999994 589999999999
Q ss_pred HHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHH
Q 016424 273 VKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDW 343 (390)
Q Consensus 273 ~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~ 343 (390)
++++++|+++.+ .+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++++..|+..
T Consensus 230 ~~~~~ai~~~~~---~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~ 298 (300)
T cd00300 230 ADIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEV 298 (300)
T ss_pred HHHHHHHHcCCC---eEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999754 588998 679999 67999999999999999999995 99999999999999655543
No 19
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.2e-59 Score=464.14 Aligned_cols=289 Identities=27% Similarity=0.355 Sum_probs=254.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGM 110 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dA 110 (390)
.||+||||+|+||+++++.|+++++++ +|+|+|+++ ++|+++||.|+.+ ...+++. + +.+++++||
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~-~~~~~~~~a 77 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--T-DPEEAFKDV 77 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--c-ChHHHhCCC
Confidence 489999999999999999999999888 599999985 6899999999852 2234432 2 336999999
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCC-CCCCceeeccc
Q 016424 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT-YDPKKLLGVTM 188 (390)
Q Consensus 111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~-~p~~kviG~t~ 188 (390)
|+||+++|.|++|||+|+|++..|+++++++++.|.++| |++++|++|||+|++|+++ ++.++ +|++||||+|.
T Consensus 78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~ 153 (323)
T cd00704 78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTR 153 (323)
T ss_pred CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeH
Confidence 999999999999999999999999999999999999996 9999999999999999865 67788 59999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCC-ceEEeecccCceeeeccccCCCCCC---------CCHH-HHHHHHHhhccchhhhHhh
Q 016424 189 LDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCS---------FTQE-ETEYLTNRIQNGGTEVVEA 257 (390)
Q Consensus 189 Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~~t~vp~~S~~~v~~~---------~~~~-~~~~l~~~v~~~~~eIi~~ 257 (390)
||++|||++||++++++|++| +++||||||+ +++|+||++++.+. ++++ ..++|.+++++++++|++.
T Consensus 154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~ 232 (323)
T cd00704 154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK 232 (323)
T ss_pred HHHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhc
Confidence 999999999999999999999 5699999999 99999999987531 3332 3578999999999999995
Q ss_pred hccCCchhHH-HHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHH
Q 016424 258 KAGAGSATLS-MAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGL 332 (390)
Q Consensus 258 k~gkg~t~~s-~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~ 332 (390)
||+++|+ +|+++++++++|++|.+++ .++||+ +++|+| ++++|||+||+||++||++++++ +|+++|+++
T Consensus 233 ---kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~ 307 (323)
T cd00704 233 ---RGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREK 307 (323)
T ss_pred ---cCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHH
Confidence 4788885 7999999999999998644 489997 789988 37999999999999999999996 999999999
Q ss_pred HHHhHHHHHHH
Q 016424 333 FCLLHLCFQDW 343 (390)
Q Consensus 333 L~~~~~~i~~~ 343 (390)
|++++..|+++
T Consensus 308 l~~s~~~l~~~ 318 (323)
T cd00704 308 LKATEEELIEE 318 (323)
T ss_pred HHHHHHHHHHH
Confidence 99999644443
No 20
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-58 Score=455.10 Aligned_cols=292 Identities=33% Similarity=0.560 Sum_probs=260.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEE
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVI 114 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVI 114 (390)
.+.+||+|||| |++|+++++.++..++ .+|+|+|+++ +.+.++|+.|... ....++. +++|+ ++++|||+||
T Consensus 4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI 79 (321)
T PTZ00082 4 IKRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVI 79 (321)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEE
Confidence 45679999999 9999999999998887 4699999998 5788999999742 2233443 24676 7899999999
Q ss_pred EcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-c
Q 016424 115 IPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-M 188 (390)
Q Consensus 115 i~ag~p~k~g~-----~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~ 188 (390)
+++|.|++||+ +|++++..|+++++++++.|+++||++|+|++|||+|++++.+ ++.+++|++|+||+| .
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~ 155 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGV 155 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCc
Confidence 99999999999 9999999999999999999999999999999999999998754 788899999999995 8
Q ss_pred ccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC----------CCCHHHHHHHHHhhccchhhhHhhh
Q 016424 189 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAK 258 (390)
Q Consensus 189 Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~eIi~~k 258 (390)
||++|++++||+++|+++++|+++|+||||+ +++|+||++++.+ .+++++++++.++++++|++|+++|
T Consensus 156 lds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~ 234 (321)
T PTZ00082 156 LDSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL 234 (321)
T ss_pred ccHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998 9999999998743 1456678999999999999999986
Q ss_pred ccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHh
Q 016424 259 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLL 336 (390)
Q Consensus 259 ~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~ 336 (390)
|||+|+||+|.++++++++|++|.+ .++||+ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|+++
T Consensus 235 -gkg~t~~~ia~a~~~i~~ail~d~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s 309 (321)
T PTZ00082 235 -GTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDES 309 (321)
T ss_pred -CCCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHH
Confidence 7899999999999999999999865 589998 789999 56999999999999999999996 9999999999999
Q ss_pred HHHHHHHH
Q 016424 337 HLCFQDWL 344 (390)
Q Consensus 337 ~~~i~~~l 344 (390)
+..|++.+
T Consensus 310 a~~i~~~~ 317 (321)
T PTZ00082 310 IKEVKRLE 317 (321)
T ss_pred HHHHHHHH
Confidence 96555443
No 21
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=1.1e-58 Score=470.81 Aligned_cols=289 Identities=21% Similarity=0.233 Sum_probs=255.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhC-------CCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhh
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENA 106 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~-------~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~a 106 (390)
.+++.||+||||+|.||+++++.|+++ +++.||+|+|+++ ++|+++||+|+.+ ...+++. ++| +++
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~ 173 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEV 173 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHH
Confidence 466899999999999999999999988 7788999999998 7999999999862 2345543 345 588
Q ss_pred hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~-~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG 185 (390)
++|||+||+++|.||+|||+|+|++..|+++++++++.|.+ ++|++++|++|||+|++|+++ ++.++++++|+||
T Consensus 174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViG 249 (444)
T PLN00112 174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFH 249 (444)
T ss_pred hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEE
Confidence 99999999999999999999999999999999999999999 599999999999999999865 7788999999999
Q ss_pred c-ccccHHHHHHHHHHHhCCCCCCC-ceEEeecccCceeeeccccCCCCCC-----CCHHH--HHHHHHhhccchhhhHh
Q 016424 186 V-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCS-----FTQEE--TEYLTNRIQNGGTEVVE 256 (390)
Q Consensus 186 ~-t~Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~--~~~l~~~v~~~~~eIi~ 256 (390)
+ |.||++||+.+||+++|+++++| +++||||||+ +++|+||++++.+. +++++ +++|.++++++|++|++
T Consensus 250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~ 328 (444)
T PLN00112 250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK 328 (444)
T ss_pred eeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence 9 89999999999999999999999 5699999999 99999999988541 23323 68999999999999998
Q ss_pred hhccCCchhH-HHHHHHHHHHHHHHcccCCCCceEEEe-eeeC-CC--CCccEEEEeEEEcCCceEEEc-cCCCCCHHHH
Q 016424 257 AKAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIF-QLGPLNEYES 330 (390)
Q Consensus 257 ~k~gkg~t~~-s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g-~~--~~~~~~svPv~ig~~Gv~~i~-~l~~Ls~~E~ 330 (390)
. ||+++| ++|.++++++.+|+++.+ ++.+++++ +++| +| ++++|||+||++|++|+++++ ++ +|+++|+
T Consensus 329 ~---kG~t~~~s~a~ai~~~I~ail~~~d-~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~ 403 (444)
T PLN00112 329 K---WGRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLR 403 (444)
T ss_pred c---cCchhHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHH
Confidence 4 576776 999999999999995443 33599998 7899 48 489999999999999999999 65 9999999
Q ss_pred HHHHHhHHH
Q 016424 331 GLFCLLHLC 339 (390)
Q Consensus 331 ~~L~~~~~~ 339 (390)
++|++++..
T Consensus 404 ~~l~~Sa~~ 412 (444)
T PLN00112 404 ERIKKSEAE 412 (444)
T ss_pred HHHHHHHHH
Confidence 999999953
No 22
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.2e-58 Score=456.93 Aligned_cols=292 Identities=22% Similarity=0.284 Sum_probs=258.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhhC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT 108 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~ 108 (390)
+++||+||||+|+||+++++.|.++++++ ||+|+|+++ ++|+++||+|+.+ ...+++. +++ +++++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence 46899999999999999999999999999 999999954 6899999999863 1345553 234 68999
Q ss_pred CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhC-CCCCCceeec
Q 016424 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 186 (390)
Q Consensus 109 dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kviG~ 186 (390)
|||+||+++|.||+|||+|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++ ++.+ +||++||+|+
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~ 153 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM 153 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence 99999999999999999999999999999999999999999 5999999999999999876 5667 5999999999
Q ss_pred ccccHHHHHHHHHHHhCCCCCCCce-EEeecccCceeeeccccCCCCC---C--CCHH--HHHHHHHhhccchhhhHhhh
Q 016424 187 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC---S--FTQE--ETEYLTNRIQNGGTEVVEAK 258 (390)
Q Consensus 187 t~Lds~R~~~~la~~l~v~p~~V~~-~ViG~Hg~~t~vp~~S~~~v~~---~--~~~~--~~~~l~~~v~~~~~eIi~~k 258 (390)
|.||++||++++|+++|+++++|++ +|||+||+ +++|+||++++.+ . +.+. ++++|.+++++++++|++.
T Consensus 154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~- 231 (322)
T cd01338 154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA- 231 (322)
T ss_pred hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhC-
Confidence 9999999999999999999999998 56999998 9999999998753 1 3444 3679999999999999994
Q ss_pred ccCCchhHHHH-HHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 016424 259 AGAGSATLSMA-YAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFC 334 (390)
Q Consensus 259 ~gkg~t~~s~A-~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~ 334 (390)
||+++|++| .++++++++|++|.+. ..+++|+ +++|+| ++++|||+||++|++||++++++ +|+++|+++|+
T Consensus 232 --kG~t~~~~~a~a~~~iv~ail~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~ 307 (322)
T cd01338 232 --RGASSAASAANAAIDHMRDWVLGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKID 307 (322)
T ss_pred --cCCccHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHH
Confidence 588999999 6999999999998852 2488887 679999 48999999999999999999996 99999999999
Q ss_pred HhHHHHHHHH
Q 016424 335 LLHLCFQDWL 344 (390)
Q Consensus 335 ~~~~~i~~~l 344 (390)
+++..|+.+-
T Consensus 308 ~s~~~l~~~~ 317 (322)
T cd01338 308 ATLAELLEER 317 (322)
T ss_pred HHHHHHHHHH
Confidence 9996554443
No 23
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=2.6e-58 Score=451.92 Aligned_cols=287 Identities=30% Similarity=0.504 Sum_probs=257.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC----CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII 115 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~----~~~v~~~~~t~dl~~al~dADiVIi 115 (390)
|||+|||+ |.||+++++.++..++. +++|+|+++ ..|.+.|+.|... ..+++. ++|+ +++++||+||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVI 75 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEE
Confidence 69999999 99999999999998876 799999988 5778889887542 234443 4676 45999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 194 (390)
Q Consensus 116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~ 194 (390)
++|.|+++|++|+|++..|++++++++++|.+++|++++|++|||+|++++++ ++.+|+|++||||+ |.||++|+
T Consensus 76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~ 151 (305)
T TIGR01763 76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF 151 (305)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence 99999999999999999999999999999999999999999999999998765 78889999999999 57999999
Q ss_pred HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCCC-----CCHHHHHHHHHhhccchhhhHhhhccCCchhHHHH
Q 016424 195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 269 (390)
Q Consensus 195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~-----~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A 269 (390)
+++||++|++++++|+++||||||+ +++|+||++++.+. +++++++++.++++++|++|+++| |||+|+|++|
T Consensus 152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a 229 (305)
T TIGR01763 152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA 229 (305)
T ss_pred HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence 9999999999999999999999999 99999999988541 345568999999999999999986 7899999999
Q ss_pred HHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHH
Q 016424 270 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWL 344 (390)
Q Consensus 270 ~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l 344 (390)
.++++++++|++|.+ .++|++ +++|+| .+++|+|+||+||++||++++++ +|+++|+++|++++..|++.+
T Consensus 230 ~~~~~i~~ai~~~~~---~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~ 302 (305)
T TIGR01763 230 ASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENC 302 (305)
T ss_pred HHHHHHHHHHhCCCC---eEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999864 488997 789999 57999999999999999999996 999999999999997666554
No 24
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=2.8e-58 Score=461.68 Aligned_cols=292 Identities=21% Similarity=0.238 Sum_probs=254.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEE--eCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhh
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENA 106 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~--Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~a 106 (390)
.+++.||+||||+|.||+++++.|..+++++ +|+|+ |+++ ++|+++||.|+.+ ...+++. +++ +++
T Consensus 41 ~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~~ 117 (387)
T TIGR01757 41 WKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YEV 117 (387)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HHH
Confidence 4668999999999999999999999999988 67778 5555 7999999999862 2345543 245 588
Q ss_pred hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG 185 (390)
++|||+||+++|.||+|||+|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++ ++.++++++|+||
T Consensus 118 ~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rviG 193 (387)
T TIGR01757 118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNFH 193 (387)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEEE
Confidence 9999999999999999999999999999999999999999987 9999999999999999865 6788999999999
Q ss_pred c-ccccHHHHHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCCC-C----CCHHH--HHHHHHhhccchhhhHh
Q 016424 186 V-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVE 256 (390)
Q Consensus 186 ~-t~Lds~R~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~~-~----~~~~~--~~~l~~~v~~~~~eIi~ 256 (390)
+ |.||++|||.+||+++++++++|+ ++||||||+ +++|+||++++.+ + +++.+ +++|.++++++|++|++
T Consensus 194 ~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~ 272 (387)
T TIGR01757 194 ALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK 272 (387)
T ss_pred ecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh
Confidence 9 899999999999999999999995 999999998 9999999998853 1 22222 68999999999999998
Q ss_pred hhccCCchhH-HHHHHHHHHHHHHHcccCCCCceEEEe-eeeCC-C--CCccEEEEeEEEcCCceEEEc-cCCCCCHHHH
Q 016424 257 AKAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIF-QLGPLNEYES 330 (390)
Q Consensus 257 ~k~gkg~t~~-s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~-~--~~~~~~svPv~ig~~Gv~~i~-~l~~Ls~~E~ 330 (390)
. ||+++| ++|.++++++++|+.+.+ ++.+++++ +++|+ | ++++|||+||++|++|+++++ ++ +|+++|+
T Consensus 273 ~---KG~t~~~s~a~ai~~~i~ai~~g~d-~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~ 347 (387)
T TIGR01757 273 K---WGRSSAASTAVSIADAIKSLVVPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLR 347 (387)
T ss_pred c---cCchhHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHH
Confidence 4 466766 999999999999995554 23588987 67996 8 479999999999999999996 75 9999999
Q ss_pred HHHHHhHHHHHH
Q 016424 331 GLFCLLHLCFQD 342 (390)
Q Consensus 331 ~~L~~~~~~i~~ 342 (390)
++|+.++..|+.
T Consensus 348 ~~l~~Sa~~L~~ 359 (387)
T TIGR01757 348 ERIRKSEDELLK 359 (387)
T ss_pred HHHHHHHHHHHH
Confidence 999999964433
No 25
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.4e-57 Score=445.80 Aligned_cols=288 Identities=27% Similarity=0.429 Sum_probs=258.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
|||+|||+ |.||+++++.|+..++..+++|+|+++ +.+.++|+.|... ....+.+ ++|+ ++++|||+||+++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence 69999999 999999999999999999999999988 6789999999752 2334544 3465 78999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHH
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF 197 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~ 197 (390)
.|+++|++|.+++.+|+++++++++.+.+++|+++++++|||+|++++++ ++.++||++||||+ |.||++|++++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999765 67789999999999 89999999999
Q ss_pred HHHHhCCCCCCCceEEeecccCceeeeccccCCCCC------------CCCHHHHHHHHHhhccchhhhHhhhccCCchh
Q 016424 198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265 (390)
Q Consensus 198 la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~ 265 (390)
||+++++++++|+++||||||+ +++|+||++++.+ .+++++++++.+++++++++|++. ||+|+
T Consensus 153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---kg~t~ 228 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIER---KGATY 228 (308)
T ss_pred HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHc---CCccH
Confidence 9999999999999999999998 9999999998742 234456899999999999999995 58999
Q ss_pred HHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHH
Q 016424 266 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDW 343 (390)
Q Consensus 266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~ 343 (390)
|++|+++++++++|++|.+ .++||+ +++|+| .+++|||+||+||++|+++++++ +||++|+++|++++..|+..
T Consensus 229 ~~~a~a~~~i~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~ 304 (308)
T cd05292 229 YAIGLALARIVEAILRDEN---SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEA 304 (308)
T ss_pred HHHHHHHHHHHHHHHcCCC---cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999754 589987 789999 57999999999999999999996 99999999999999766655
Q ss_pred HH
Q 016424 344 LG 345 (390)
Q Consensus 344 l~ 345 (390)
++
T Consensus 305 ~~ 306 (308)
T cd05292 305 IE 306 (308)
T ss_pred Hh
Confidence 43
No 26
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=1.5e-56 Score=442.42 Aligned_cols=292 Identities=23% Similarity=0.290 Sum_probs=250.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEE
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV 113 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiV 113 (390)
||+||||+|+||+++++.|.++++++ +|+|+|+++ ++|+++||.|+.....-.. ..+++.+++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~-~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGV-VPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCce-eccCChHHHhCCCCEE
Confidence 69999999999999999999988875 799999954 6799999999873211112 2233546899999999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccH
Q 016424 114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV 191 (390)
Q Consensus 114 Ii~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds 191 (390)
|+++|.|+++|++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++ ++.++++|+++||+ |.||+
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs 155 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH 155 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence 999999999999999999999999999999999996 9999999999999999865 67777777789999 89999
Q ss_pred HHHHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCC-C----C----CCHHH--HHHHHHhhccchhhhHhhhc
Q 016424 192 VRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP-C----S----FTQEE--TEYLTNRIQNGGTEVVEAKA 259 (390)
Q Consensus 192 ~R~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~-~----~----~~~~~--~~~l~~~v~~~~~eIi~~k~ 259 (390)
+|||++||+++|++|++|+ ++||||||+ +++|+||++++. + + +++++ ++++.+++++++++|++.|
T Consensus 156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 233 (324)
T TIGR01758 156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233 (324)
T ss_pred HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence 9999999999999999996 699999999 999999999886 4 1 22222 5789999999999999964
Q ss_pred cCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCC-C--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 016424 260 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCL 335 (390)
Q Consensus 260 gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~-~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~ 335 (390)
+|++.|++|.++++++++|+++.+ ++.++||+ +++|+ | ++++|||+||++|++|++.+.++ +|+++|+++|+.
T Consensus 234 -~~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~ 310 (324)
T TIGR01758 234 -KLSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLAL 310 (324)
T ss_pred -CCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHH
Confidence 358999999999999999995443 33599998 77999 8 47999999999997777777776 999999999999
Q ss_pred hHHHHHHHH
Q 016424 336 LHLCFQDWL 344 (390)
Q Consensus 336 ~~~~i~~~l 344 (390)
++..|+...
T Consensus 311 s~~~lk~~~ 319 (324)
T TIGR01758 311 TAKELEEER 319 (324)
T ss_pred HHHHHHHHH
Confidence 996555444
No 27
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=7.6e-56 Score=437.79 Aligned_cols=292 Identities=23% Similarity=0.297 Sum_probs=254.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCc-----EEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhhC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT 108 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~-----eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~ 108 (390)
++.||+|+||+|+||+++++.|..+++++ ||+|+|+++ +.++++|+.|+.+ ..+++. +++++++++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~ 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence 46899999999999999999999988775 999999964 5788999999752 234443 357779999
Q ss_pred CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHh-CCCCCCceeec
Q 016424 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGV 186 (390)
Q Consensus 109 dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~-s~~p~~kviG~ 186 (390)
|||+||++||.|+++|++|.+++..|+.+++++++.|.+++ |++++|++|||+|++|+++ ++. +++|+++ ||+
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~ 152 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA 152 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence 99999999999999999999999999999999999999997 7999999999999999866 555 5777777 888
Q ss_pred -ccccHHHHHHHHHHHhCCCCCCCc-eEEeecccCceeeeccccCCCC----CC-----CCHHH--HHHHHHhhccchhh
Q 016424 187 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----CS-----FTQEE--TEYLTNRIQNGGTE 253 (390)
Q Consensus 187 -t~Lds~R~~~~la~~l~v~p~~V~-~~ViG~Hg~~t~vp~~S~~~v~----~~-----~~~~~--~~~l~~~v~~~~~e 253 (390)
|.||++||+++||+++++++++|+ .+||||||+ +++|+||++++. +. +++++ +++|.+++++++++
T Consensus 153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~ 231 (325)
T cd01336 153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA 231 (325)
T ss_pred eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence 899999999999999999999996 569999999 999999999886 31 22222 58999999999999
Q ss_pred hHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHH
Q 016424 254 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYES 330 (390)
Q Consensus 254 Ii~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~ 330 (390)
|++.| +|+|.|++|.++++++++|++|.+ ++.+++++ +++|+| ++++|||+||++|++||++++++ +|+++|+
T Consensus 232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~ 307 (325)
T cd01336 232 VIKAR--KLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSR 307 (325)
T ss_pred HHHcc--ccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHH
Confidence 99964 479999999999999999999853 23589997 679999 48999999999999999999996 9999999
Q ss_pred HHHHHhHHHHHHHH
Q 016424 331 GLFCLLHLCFQDWL 344 (390)
Q Consensus 331 ~~L~~~~~~i~~~l 344 (390)
++|+.++..|+++.
T Consensus 308 ~~l~~s~~~l~~e~ 321 (325)
T cd01336 308 EKIDATAKELVEEK 321 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999996555544
No 28
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=3.6e-55 Score=428.66 Aligned_cols=286 Identities=34% Similarity=0.553 Sum_probs=255.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
|+|||| |.||+++++.++++++. +|+|+|+++ +.+.++|+.|... ....++.. ++|+ ++++|||+||+++|.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~-t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG-TNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE-cCCH-HHhCCCCEEEEecCC
Confidence 689999 99999999999999877 999999998 5788889888642 12233332 4575 779999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc-cccHHHHHHHH
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFV 198 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t-~Lds~R~~~~l 198 (390)
|+++|++|++++.+|++++++++++|+++||++++|++|||+|++++++ ++++++|++|+||+| .||++|++++|
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l 152 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI 152 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765 678899999999995 79999999999
Q ss_pred HHHhCCCCCCCceEEeecccCceeeeccccCCCCC-C----CCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHH
Q 016424 199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV 273 (390)
Q Consensus 199 a~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~ 273 (390)
|++|++++++|+++|+|+||+ +++|+||++++.+ + +++++++++.+++++++++|++.| |+|+|+|++|.+++
T Consensus 153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~ 230 (300)
T cd01339 153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA 230 (300)
T ss_pred HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence 999999999999999999998 9999999998853 1 345568999999999999999987 78999999999999
Q ss_pred HHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHH
Q 016424 274 KFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDW 343 (390)
Q Consensus 274 ~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~ 343 (390)
+++++|++|.+ .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++++..|++.
T Consensus 231 ~i~~ail~~~~---~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~ 298 (300)
T cd01339 231 EMVEAILKDKK---RVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKEL 298 (300)
T ss_pred HHHHHHHcCCC---cEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHH
Confidence 99999999754 588998 789999 46999999999999999999996 99999999999999655543
No 29
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=6.5e-55 Score=427.55 Aligned_cols=291 Identities=32% Similarity=0.559 Sum_probs=258.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
|+||+|||| |.+|+++++.++..++. +|+|+|+++ +++.++|+.|... ....++. .++|+ ++++|||+||++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence 579999999 99999999999998877 999999988 6788899988642 1223332 24676 779999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHH
Q 016424 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN 195 (390)
Q Consensus 117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~ 195 (390)
+|.|+++|++|++++.+|+++++++++.|.+++|++|+|++|||+|++|+++ ++++++|++||||+ |.||++||+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~ 153 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR 153 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999765 67889999999999 589999999
Q ss_pred HHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-C----CCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHH
Q 016424 196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY 270 (390)
Q Consensus 196 ~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~ 270 (390)
++||+++++++++|+++|+|+||+ +++|+||++++.+ + ++++.++++.+++++++.+|++.+ +||++.|++|.
T Consensus 154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~ 231 (307)
T PRK06223 154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231 (307)
T ss_pred HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence 999999999999999999999998 9999999998742 1 455567899999999999999974 56899999999
Q ss_pred HHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHHH
Q 016424 271 AAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWLG 345 (390)
Q Consensus 271 a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l~ 345 (390)
++++++++|+.|.+ .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++++..|++.++
T Consensus 232 ~~~~ii~ail~~~~---~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~ 304 (307)
T PRK06223 232 SIAEMVEAILKDKK---RVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIE 304 (307)
T ss_pred HHHHHHHHHHcCCC---cEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998754 488887 789988 57999999999999999999996 9999999999999976665554
No 30
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=1.2e-54 Score=426.64 Aligned_cols=290 Identities=26% Similarity=0.439 Sum_probs=256.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEE
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII 115 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi 115 (390)
|||+|+||+|.+|+++++.++..++.++|+|+|+++ +.+.++|+.|... ....+... ++|+ ++++|||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~-~~d~-~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI-SSDL-SDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEE-CCCH-HHhCCCCEEEE
Confidence 699999988999999999999999989999999954 5889999998642 22233332 4564 67999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHH
Q 016424 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 194 (390)
Q Consensus 116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~ 194 (390)
++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++ ++.+++|++|+||+ |.||++|+
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~ 154 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF 154 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999765 67788999999999 68999999
Q ss_pred HHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCCC-------CCCHHHHHHHHHhhccchhhhHhhhccCCchhHH
Q 016424 195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 267 (390)
Q Consensus 195 ~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~-------~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s 267 (390)
+++||+++++++++|+++|+||||+ +++|+||++++.+ ...+.+++++.++++++|++|++.| |++.||
T Consensus 155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~ 230 (309)
T cd05294 155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYG 230 (309)
T ss_pred HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhh
Confidence 9999999999999999999999999 9999999998853 1224567899999999999999954 778999
Q ss_pred HHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHHHH
Q 016424 268 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQDWL 344 (390)
Q Consensus 268 ~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~~l 344 (390)
+|.++++++++|++|++ .+++++ +++|+| .+++++|+||+||++|+++++++ +|+++|+++|++++..|++.+
T Consensus 231 ~a~~~~~ii~ail~~~~---~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~ 306 (309)
T cd05294 231 PASAISNLVRTIANDER---RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYT 306 (309)
T ss_pred HHHHHHHHHHHHHCCCC---eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999865 488887 678887 24899999999999999999996 999999999999997776655
Q ss_pred H
Q 016424 345 G 345 (390)
Q Consensus 345 ~ 345 (390)
+
T Consensus 307 ~ 307 (309)
T cd05294 307 R 307 (309)
T ss_pred h
Confidence 4
No 31
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=5.5e-54 Score=420.89 Aligned_cols=262 Identities=21% Similarity=0.312 Sum_probs=231.0
Q ss_pred EEEEEeCCc----hHHHHHHHhcccC-C-CeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 016424 69 VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 142 (390)
Q Consensus 69 eL~L~Di~~----~~g~a~DL~~~~~-~-~~v~~~~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia 142 (390)
.|+|+|+++ ++|+++||.|+.. . ..++. ++|.+++++|||+||+++|.||+|||+|.+++..|++++++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~ 91 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA 91 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 799999976 6899999999862 1 23432 3454699999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHHHHHHhCCCCCCC-ceEEeecccC
Q 016424 143 EGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAG 219 (390)
Q Consensus 143 ~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~ 219 (390)
+.|.++ +|+|++|++|||+|++|+++ ++.+++|++|+||+ |.||++|||++||+++|+++++| +++||||||+
T Consensus 92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~ 167 (309)
T PLN00135 92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS 167 (309)
T ss_pred HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence 999996 89999999999999999866 67789999999999 89999999999999999999999 6999999999
Q ss_pred ceeeeccccCCC----CC-C----CCHHH--HHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCc
Q 016424 220 VTILPLLSQVKP----PC-S----FTQEE--TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAG 288 (390)
Q Consensus 220 ~t~vp~~S~~~v----~~-~----~~~~~--~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~ 288 (390)
+++|+||++++ .+ + +.+++ .+++.++++++|++|+++| ||+|+||+|.++++++++|+++.+ ++.
T Consensus 168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~~-~~~ 243 (309)
T PLN00135 168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTP-EGT 243 (309)
T ss_pred -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence 99999999988 32 1 23333 6889999999999999963 579999999999999999999642 235
Q ss_pred eEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHH
Q 016424 289 VVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQD 342 (390)
Q Consensus 289 v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~ 342 (390)
+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|+.++..|+.
T Consensus 244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~ 299 (309)
T PLN00135 244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKE 299 (309)
T ss_pred EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHH
Confidence 89998 789999 48999999999999999999996 9999999999999964443
No 32
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.5e-53 Score=431.68 Aligned_cols=285 Identities=15% Similarity=0.119 Sum_probs=247.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCC-----cEEEEEeCC--c--hHHHHHHHhcccCC--CeEEEEeCCCChhhh
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDTG--AVVRGFLGQPQLENA 106 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~-----~eL~L~Di~--~--~~g~a~DL~~~~~~--~~v~~~~~t~dl~~a 106 (390)
.+++.+|+|.||+|.+|+++.+.++....+ -.|+|+|+. . ++|+++||.|+.+. ..+++++ ++ +++
T Consensus 120 ~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~--~~-~ea 196 (452)
T cd05295 120 KINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT--DL-DVA 196 (452)
T ss_pred CCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE--CC-HHH
Confidence 566789999999999999999999986432 369999994 4 79999999998732 2455543 34 699
Q ss_pred hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEecCCCcccHHHHHHHHHHhC-CCCCCce
Q 016424 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKL 183 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p--~a~iiv~tNPvd~~t~i~ae~~~~~s-~~p~~kv 183 (390)
++|||+||+++|.||+|||+|.|++..|++++++++++|.+++| ++++|+.|||+|++|+++ ++.+ ++|++||
T Consensus 197 ~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rV 272 (452)
T cd05295 197 FKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNI 272 (452)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHE
Confidence 99999999999999999999999999999999999999999999 899999999999999876 4445 9999999
Q ss_pred eecccccHHHHHHHHHHHhCCCCCCC-ceEEeecccCceeeeccccCCCCC-------------C----CCHHH--HHHH
Q 016424 184 LGVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-------------S----FTQEE--TEYL 243 (390)
Q Consensus 184 iG~t~Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~~t~vp~~S~~~v~~-------------~----~~~~~--~~~l 243 (390)
||+++||++|++++||+++|+++++| +++||||||+ ++||+||++++.+ + +.+++ .+++
T Consensus 273 ig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~ 351 (452)
T cd05295 273 IAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEF 351 (452)
T ss_pred EEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHH
Confidence 99987899999999999999999999 6799999999 9999999998743 1 22333 3567
Q ss_pred HHhhccchhhhHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEc
Q 016424 244 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIF 320 (390)
Q Consensus 244 ~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~ 320 (390)
.+.+++++. + +||+|.||+|.|+++++++|++|.+.. .+++++ +++|+| +++++||+||++|++|++.+.
T Consensus 352 ~~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~~~-~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~ 424 (452)
T cd05295 352 VATLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSPPG-EIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVT 424 (452)
T ss_pred HHHHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCCCC-eEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEe
Confidence 888888876 2 568999999999999999999997522 488887 789999 589999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhHH
Q 016424 321 QLGPLNEYESGLFCLLHL 338 (390)
Q Consensus 321 ~l~~Ls~~E~~~L~~~~~ 338 (390)
++ +|+++|+++|+.++.
T Consensus 425 ~L-~L~e~E~~kL~~S~~ 441 (452)
T cd05295 425 DL-ELSEILREVLKRITS 441 (452)
T ss_pred CC-CCCHHHHHHHHHHHH
Confidence 96 999999999999985
No 33
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=1.5e-52 Score=411.68 Aligned_cols=266 Identities=20% Similarity=0.246 Sum_probs=229.7
Q ss_pred EEEEEeCCc----hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 016424 69 VLHLYDVVN----TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 143 (390)
Q Consensus 69 eL~L~Di~~----~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~ 143 (390)
.|+|+|+++ ++|+++||.|+.. ..+.... ++|++++++|||+||+|+|.||+|||+|.|++..|+++++++++
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~ 94 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE 94 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 799999977 6899999999872 2223333 35777899999999999999999999999999999999999999
Q ss_pred HHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccHHHHHHHHHHHhCCCCCCCce-EEeecccCc
Q 016424 144 GIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGV 220 (390)
Q Consensus 144 ~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds~R~~~~la~~l~v~p~~V~~-~ViG~Hg~~ 220 (390)
.|.+++| ++++|++|||+|++|+++. ++.++||++ +||+ |.||++||+++||++++++|++|+. +||||||+
T Consensus 95 ~i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~- 169 (313)
T TIGR01756 95 ALSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE- 169 (313)
T ss_pred HHHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-
Confidence 9999995 5889999999999998652 588999998 9999 8999999999999999999999965 59999999
Q ss_pred eeeeccccCCC--CC-C------CCHH-HHHHHHHhhccchhhhHhhhccCCchhHHHH-HHHHHHHHHHHcccCCCCce
Q 016424 221 TILPLLSQVKP--PC-S------FTQE-ETEYLTNRIQNGGTEVVEAKAGAGSATLSMA-YAAVKFADACLRGLRGDAGV 289 (390)
Q Consensus 221 t~vp~~S~~~v--~~-~------~~~~-~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A-~a~~~lv~aIl~~~~~~~~v 289 (390)
+++|+||++++ .+ + ++++ .++++.++++++|++|++. ||+|+|++| .++++++++|++|.+. +.+
T Consensus 170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t~~~~~a~ai~~iv~ail~~~~~-~~i 245 (313)
T TIGR01756 170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEM---RGFTSAASPVKASLQHMKAWLFGTRP-GEV 245 (313)
T ss_pred ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhC---cCCcchHHHHHHHHHHHHHHhcCCCC-CeE
Confidence 99999999988 43 1 2332 3689999999999999994 589999977 6999999999997653 359
Q ss_pred EEEe-eee--CCC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHhHHHHHHHHHh
Q 016424 290 VECA-FVA--SQV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYESGLFCLLHLCFQDWLGE 346 (390)
Q Consensus 290 ~~~s-~~~--g~~--~~~~~~svPv~ig~~Gv~~i~~-l~~Ls~~E~~~L~~~~~~i~~~l~~ 346 (390)
+||+ +++ |+| ++++|||+||++|++|++++++ + +|+++|+++|+.++..|+.+...
T Consensus 246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~ 307 (313)
T TIGR01756 246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERET 307 (313)
T ss_pred EEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9998 575 388 3699999999999999999999 7 99999999999999766655533
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=4.1e-51 Score=392.86 Aligned_cols=252 Identities=28% Similarity=0.427 Sum_probs=227.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCc--hHHHHHHHhcccCCC-eEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 44 VAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~--~~g~a~DL~~~~~~~-~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
|+||||+|.+|+.+++.+++.+ ...||+|||+++ +++.++|+.|..... ..++.. ++|++++++|||+||+++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-TDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-CCchHHHhCCCCEEEECCC
Confidence 6899998999999999999998 788999999987 789999999976432 344433 6788899999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHHHHH
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 198 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~~~l 198 (390)
.|+++|++|.+++.+|++++++++++|+++||+||+|++|||+|++|+++ ++.+++|++|+||+|+||+.|+++++
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l 155 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL 155 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765 77789999999999669999999999
Q ss_pred HHHhCCCCCCCceEEeecccCceeeeccccCCCCCCCCHHHHHHHHHhhccchhhhHhhhccCCchhHHHHHHHHHHHHH
Q 016424 199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 278 (390)
Q Consensus 199 a~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~eIi~~k~gkg~t~~s~A~a~~~lv~a 278 (390)
|+++++++++|+++|||+||+ +++|+||+++ +|.++++++++
T Consensus 156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a 197 (263)
T cd00650 156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS 197 (263)
T ss_pred HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence 999999999999999999999 8999999765 67899999999
Q ss_pred HHcccCCCCceEEEe-eeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHHHHHH
Q 016424 279 CLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHLCFQD 342 (390)
Q Consensus 279 Il~~~~~~~~v~~~s-~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~~i~~ 342 (390)
|++|.+ .+++++ +++|+| +++++||+||++|++|+++++++ +|+++|+++|+.++..++.
T Consensus 198 i~~~~~---~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~ 260 (263)
T cd00650 198 LLNDEG---EILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKK 260 (263)
T ss_pred HHcCCC---EEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence 999853 478887 679998 48999999999999999999996 9999999999999864443
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.7e-42 Score=320.02 Aligned_cols=292 Identities=24% Similarity=0.339 Sum_probs=257.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCC-----CCcEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeCCCChhhhhCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG 109 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~-----~~~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d 109 (390)
+.+.+|.|.||+|.||+++.+.++... .--.|+|.|+.. +.|+.++|+|+.. +.++....+||..++++|
T Consensus 2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~-PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCAL-PLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhh-hHHHhhhcccChhhhhcc
Confidence 456799999999999999999997631 223899999987 6899999999985 555554457788999999
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeeccc
Q 016424 110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM 188 (390)
Q Consensus 110 ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~ 188 (390)
.|+.|+.++.||++||+|.|++..|..|+++.++++++|+ |+.+++++.||.|..+.++. +.++.+|.+++-.+|.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTR 157 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTR 157 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhh
Confidence 9999999999999999999999999999999999999998 89999999999999987764 6788999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCC-ceEEeecccCceeeeccccCCCCC---------CCCHHHH--HHHHHhhccchhhhHh
Q 016424 189 LDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC---------SFTQEET--EYLTNRIQNGGTEVVE 256 (390)
Q Consensus 189 Lds~R~~~~la~~l~v~p~~V-~~~ViG~Hg~~t~vp~~S~~~v~~---------~~~~~~~--~~l~~~v~~~~~eIi~ 256 (390)
||.+|+..+||.++||+.++| ++++||+|+. |++|+..++++.. .++|+.| .++.+.||++|..|++
T Consensus 158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ 236 (332)
T KOG1496|consen 158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIK 236 (332)
T ss_pred hchhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhh
Confidence 999999999999999999999 6999999998 9999999998853 1456666 5899999999999998
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEeeeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 016424 257 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFC 334 (390)
Q Consensus 257 ~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s~~~g~~--~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~ 334 (390)
++ |-|+.+|.|.+++++++.|+.+.+...++....|.+|.| |++..||+||++ ++|-|++++-.+++++-++++.
T Consensus 237 ar--k~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km~ 313 (332)
T KOG1496|consen 237 AR--KLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKMD 313 (332)
T ss_pred hh--hhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhhh
Confidence 75 468889999999999999999998665444445889999 889999999999 8899999986699999999999
Q ss_pred HhHH
Q 016424 335 LLHL 338 (390)
Q Consensus 335 ~~~~ 338 (390)
.+++
T Consensus 314 ~t~~ 317 (332)
T KOG1496|consen 314 LTAK 317 (332)
T ss_pred hhHH
Confidence 8885
No 36
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=3.2e-33 Score=245.27 Aligned_cols=137 Identities=40% Similarity=0.625 Sum_probs=124.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCC--eEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~--~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|||+||||+|.||+++++.|+++++++||+|+|+++ ++|+++||+|+.+.. ..+... .+ +++++|||+||+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS--GD-YEALKDADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE--SS-GGGGTTESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc--cc-ccccccccEEEEec
Confidence 799999999999999999999999999999999997 799999999987433 344433 34 68999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG 185 (390)
|.||+||++|.+++..|+++++++++.|.++||+++++++|||+|+++++ +++.+++|++|+||
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~~~~kviG 141 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGFPPNKVIG 141 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTSSGGGEEE
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCcCcccCcC
Confidence 99999999999999999999999999999999999999999999988765 48889999999998
No 37
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=100.00 E-value=7.7e-31 Score=267.27 Aligned_cols=276 Identities=20% Similarity=0.254 Sum_probs=192.7
Q ss_pred CEEEEEcCCCCcHHHHH-HHHHhC-C--CCcEEEEEeCC-c-hHH----HHHHHhcccCCCeEEEEeCCCChhhhhCCCc
Q 016424 42 FKVAILGAAGGIGQPLA-MLMKIN-P--LVSVLHLYDVV-N-TPG----VTADISHMDTGAVVRGFLGQPQLENALTGMD 111 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a-~~l~~~-~--~~~eL~L~Di~-~-~~g----~a~DL~~~~~~~~v~~~~~t~dl~~al~dAD 111 (390)
|||+|||| |++..+.. ..|+.. + ..+||+|||+| + ... .+.++.+.. ...+++.. |+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~~-t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVHL-TTDRREALEGAD 77 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCC
Confidence 69999999 86532222 244442 3 46999999999 5 222 223333322 34566544 689999999999
Q ss_pred EEEEcCCCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 016424 112 LVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 171 (390)
Q Consensus 112 iVIi~ag~p~k~g~~r~~l--------------------~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~ 171 (390)
|||++.++++.+++++++. +.+|+++++++++.|+++||+||+|++|||+|++|+++
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~--- 154 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV--- 154 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence 9999988877777666553 68999999999999999999999999999999997654
Q ss_pred HHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-cccC---------ceeeec-c--------------
Q 016424 172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPL-L-------------- 226 (390)
Q Consensus 172 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~---------~t~vp~-~-------------- 226 (390)
++.+ +.|+||+|+.+ .|+++++|+.+|+++++|+++|+| ||.. ++.+|. .
T Consensus 155 -~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~ 229 (419)
T cd05296 155 -LRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLL 229 (419)
T ss_pred -HHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccc
Confidence 6654 68999999884 899999999999999999999999 8876 234441 1
Q ss_pred -ccC------CCCCC------CCHHHHH------------------HHHHhhccch----hhhHhhhccCCchhHHHHHH
Q 016424 227 -SQV------KPPCS------FTQEETE------------------YLTNRIQNGG----TEVVEAKAGAGSATLSMAYA 271 (390)
Q Consensus 227 -S~~------~v~~~------~~~~~~~------------------~l~~~v~~~~----~eIi~~k~gkg~t~~s~A~a 271 (390)
+.. .+|.. +.++.++ ++.+..++.. .+-++. ++.+.| +..
T Consensus 230 ~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~---r~g~~y--~e~ 304 (419)
T cd05296 230 FGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEK---RGGAGY--SEA 304 (419)
T ss_pred hHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHh---hcCcch--HHH
Confidence 000 00110 1121111 1111111110 011111 122333 378
Q ss_pred HHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424 272 AVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH 337 (390)
Q Consensus 272 ~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~ 337 (390)
++++++||.+|.+. ++.++ .++|.+ |+|.++++||+|+++|+.++.- ++|++...++++...
T Consensus 305 a~~ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~ 370 (419)
T cd05296 305 ALALISAIYNDKGD---IHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVK 370 (419)
T ss_pred HHHHHHHHhcCCCc---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHH
Confidence 89999999987653 44444 567875 7899999999999999999765 799999988877444
No 38
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=1.8e-32 Score=248.28 Aligned_cols=153 Identities=31% Similarity=0.462 Sum_probs=135.9
Q ss_pred ccccHHHHHHHHHHHhCCCCCCCceEEeecccCceeeeccccCCCC-----------CCCCHHHHHHHHHhhccchhhhH
Q 016424 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-----------CSFTQEETEYLTNRIQNGGTEVV 255 (390)
Q Consensus 187 t~Lds~R~~~~la~~l~v~p~~V~~~ViG~Hg~~t~vp~~S~~~v~-----------~~~~~~~~~~l~~~v~~~~~eIi 255 (390)
|.||++||+++||+++|++|++++++||||||+ +++|+||++++. ..+++++++++.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 679999999999999999999999999999999 999999999874 23677788999999999999999
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC-CCc--cEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 016424 256 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TEL--PFFASKVRLGRQGAEEIFQLGPLNEYESG 331 (390)
Q Consensus 256 ~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~-~~~--~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~ 331 (390)
++|. |+++||+|.|+++++++|++|.+ .+++++ +++|+| .++ +|||+||++|++|++++++.++|+++|++
T Consensus 80 ~~k~--g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~ 154 (174)
T PF02866_consen 80 KAKG--GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE 154 (174)
T ss_dssp HHHS--SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred eecc--ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence 9873 89999999999999999999874 488887 779999 334 99999999999999999984499999999
Q ss_pred HHHHhHHHHHHHHH
Q 016424 332 LFCLLHLCFQDWLG 345 (390)
Q Consensus 332 ~L~~~~~~i~~~l~ 345 (390)
+|++++..|++.++
T Consensus 155 ~l~~sa~~l~~~i~ 168 (174)
T PF02866_consen 155 KLKESAKELKKEIE 168 (174)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999954444443
No 39
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.98 E-value=5.9e-31 Score=268.54 Aligned_cols=269 Identities=20% Similarity=0.210 Sum_probs=189.4
Q ss_pred CEEEEEcCCCCcHHHHHH----HHHhCC---CCcEEEEEeCCc-hHHHHHH----HhcccCCCeEEEEeCCCChhhhhCC
Q 016424 42 FKVAILGAAGGIGQPLAM----LMKINP---LVSVLHLYDVVN-TPGVTAD----ISHMDTGAVVRGFLGQPQLENALTG 109 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~----~l~~~~---~~~eL~L~Di~~-~~g~a~D----L~~~~~~~~v~~~~~t~dl~~al~d 109 (390)
+||+|||| |+. +++ .|+..+ ..+||+|||+|+ ....+.. +.+.. ...+++.. |+|+++|++|
T Consensus 1 ~KI~iIGg-GS~---~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~-ttD~~~Al~g 74 (425)
T cd05197 1 VKIAIIGG-GSS---FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFEK-TMDLEDAIID 74 (425)
T ss_pred CEEEEECC-chH---hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCC
Confidence 69999999 853 444 344443 368999999998 3333333 33322 34566554 7899999999
Q ss_pred CcEEEEcC---C---------CCCCCCCC--------HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHH
Q 016424 110 MDLVIIPA---G---------VPRKPGMT--------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 169 (390)
Q Consensus 110 ADiVIi~a---g---------~p~k~g~~--------r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~a 169 (390)
|||||.+. | +|.|+|.. ....+.+|++++++|++.|+++||+||+|++|||+|++|+++
T Consensus 75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~- 153 (425)
T cd05197 75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV- 153 (425)
T ss_pred CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH-
Confidence 99999984 3 35566532 245678999999999999999999999999999999998755
Q ss_pred HHHHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-cccCceeeeccccCCCC----------------
Q 016424 170 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAGVTILPLLSQVKPP---------------- 232 (390)
Q Consensus 170 e~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~~t~vp~~S~~~v~---------------- 232 (390)
++. +|+.|+||+|+. +.|+++++|+.+|+++++|+++++| ||+. +||.+++.
T Consensus 154 ---~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~ 222 (425)
T cd05197 154 ---RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKS 222 (425)
T ss_pred ---HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccC
Confidence 555 377899999887 8999999999999999999999999 9983 34433210
Q ss_pred ----------------------------CC------CCH----H-------------HHH----HHHHhhccc---hhh-
Q 016424 233 ----------------------------CS------FTQ----E-------------ETE----YLTNRIQNG---GTE- 253 (390)
Q Consensus 233 ----------------------------~~------~~~----~-------------~~~----~l~~~v~~~---~~e- 253 (390)
.. ..+ + +.. ++.+..++. ...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~ 302 (425)
T cd05197 223 KDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVV 302 (425)
T ss_pred ccccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChh
Confidence 00 000 0 000 011111100 000
Q ss_pred hHhhhccCCchhHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHH
Q 016424 254 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYE 329 (390)
Q Consensus 254 Ii~~k~gkg~t~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E 329 (390)
-.. -.+.+.+ +..++++++||.+|.+. ++.++ .++|.. |+|.++++||+|+++|+.++.- ++|++..
T Consensus 303 ~~~---~r~~~~~--~e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~ 373 (425)
T cd05197 303 ELI---KRGGRKY--SEAAIPLIRALLNDNGA---RFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFV 373 (425)
T ss_pred hhh---hcCCccc--HHHHHHHHHHHHcCCCe---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHH
Confidence 000 0122223 47889999999998763 44454 567775 7899999999999999999765 7999988
Q ss_pred HHHHHHhH
Q 016424 330 SGLFCLLH 337 (390)
Q Consensus 330 ~~~L~~~~ 337 (390)
+++++.-.
T Consensus 374 ~~Li~~~~ 381 (425)
T cd05197 374 KGLLRQRK 381 (425)
T ss_pred HHHHHHHH
Confidence 88777444
No 40
>PRK15076 alpha-galactosidase; Provisional
Probab=99.98 E-value=5e-31 Score=269.78 Aligned_cols=280 Identities=17% Similarity=0.148 Sum_probs=194.3
Q ss_pred CCEEEEEcCCCCcHHHHHH--HHH-hCCCC-cEEEEEeCCc--hH-HHHHHHhccc--CCCeEEEEeCCCChhhhhCCCc
Q 016424 41 GFKVAILGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMD--TGAVVRGFLGQPQLENALTGMD 111 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~--~l~-~~~~~-~eL~L~Di~~--~~-g~a~DL~~~~--~~~~v~~~~~t~dl~~al~dAD 111 (390)
++||+|||| |++|.+.++ .++ ...+. .||+|||+++ +. +.+. +.+.. ....+++. .++|+++|++|||
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence 479999999 999999887 665 34454 5999999998 33 3333 44432 12334443 2679889999999
Q ss_pred EEEEcCCCC-CCCC--------------CCHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHH
Q 016424 112 LVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA 168 (390)
Q Consensus 112 iVIi~ag~p-~k~g--------------~~r~~l--------~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ 168 (390)
|||++++++ ++++ ++|.+. +.+|+++++++++.|+++||+||+|++|||+|++|+.+
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~ 157 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM 157 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence 999999876 5545 566677 89999999999999999999999999999999998644
Q ss_pred HHHHHHhCCCCCCceeeccc--ccHHHHHHHHHHHhCCCCCCCceEEee-cccC---------ceeeecccc--------
Q 016424 169 AEVFKKAGTYDPKKLLGVTM--LDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPLLSQ-------- 228 (390)
Q Consensus 169 ae~~~~~s~~p~~kviG~t~--Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~---------~t~vp~~S~-------- 228 (390)
+ ++|+.||||+|+ +|+. +.+|+.+|+++++|++++.| ||.. ++.+|.+-.
T Consensus 158 ----~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~ 227 (431)
T PRK15076 158 ----N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTR 227 (431)
T ss_pred ----h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCch
Confidence 3 578899999983 6664 78999999999999999999 5554 233332110
Q ss_pred -CC-C-----------CC------------C-C--CHHHHHHHHHhh---ccch-------hhhH-hhhccCCchhHHHH
Q 016424 229 -VK-P-----------PC------------S-F--TQEETEYLTNRI---QNGG-------TEVV-EAKAGAGSATLSMA 269 (390)
Q Consensus 229 -~~-v-----------~~------------~-~--~~~~~~~l~~~v---~~~~-------~eIi-~~k~gkg~t~~s~A 269 (390)
.. + +. . . .++.++++...+ .+++ .+.. +..+|+..-.-..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (431)
T PRK15076 228 CQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRSR 307 (431)
T ss_pred hcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccch
Confidence 00 0 00 0 1 233332222100 0111 1111 11111100001145
Q ss_pred HHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424 270 YAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH 337 (390)
Q Consensus 270 ~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~ 337 (390)
..++++++||.+|.+. ++.++ .++|.+ |+|.++++||+|+++|+.++.- ++|++..+++++.-.
T Consensus 308 e~a~~ii~ai~~~~~~---~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~~~~ 375 (431)
T PRK15076 308 EYASTIIEAIETGEPS---VIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNRTNI 375 (431)
T ss_pred HHHHHHHHHHhcCCce---EEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHHHHH
Confidence 7899999999988763 44454 567875 7899999999999999999875 799999999887444
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.97 E-value=6.2e-29 Score=254.25 Aligned_cols=280 Identities=19% Similarity=0.257 Sum_probs=189.3
Q ss_pred CEEEEEcCCCCcHHHHHH----HHHhC-C--CCcEEEEEeCCc-hHHHHHHHhccc---CCCeEEEEeCCCChhhhhCCC
Q 016424 42 FKVAILGAAGGIGQPLAM----LMKIN-P--LVSVLHLYDVVN-TPGVTADISHMD---TGAVVRGFLGQPQLENALTGM 110 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~----~l~~~-~--~~~eL~L~Di~~-~~g~a~DL~~~~---~~~~v~~~~~t~dl~~al~dA 110 (390)
|||+|||| |+. +++ .|.+. + ..+||+|||||+ ....+..+.+.. ....+++.. |+|+++|++||
T Consensus 1 ~KI~iIGa-GS~---~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~-Ttdr~eAl~gA 75 (437)
T cd05298 1 FKIVIAGG-GST---YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVY-TTDPEEAFTDA 75 (437)
T ss_pred CeEEEECC-cHH---HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEE-ECCHHHHhCCC
Confidence 79999999 854 443 44444 2 368999999998 333333333221 234666654 78999999999
Q ss_pred cEEEEcC---C---------CCCCCCC---C-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHH
Q 016424 111 DLVIIPA---G---------VPRKPGM---T-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170 (390)
Q Consensus 111 DiVIi~a---g---------~p~k~g~---~-----r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae 170 (390)
||||++. | +|.|+|. + ....+.||+++++++++.|+++||+||+|++|||++++|+.+
T Consensus 76 DfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~-- 153 (437)
T cd05298 76 DFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL-- 153 (437)
T ss_pred CEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH--
Confidence 9999974 3 3566663 2 235678999999999999999999999999999999998654
Q ss_pred HHHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-cccC----------ceeeeccc----c-------
Q 016424 171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG----------VTILPLLS----Q------- 228 (390)
Q Consensus 171 ~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~----------~t~vp~~S----~------- 228 (390)
++. +|+.|+||+|+.. .-++..+|+.||+++++|+..+.| ||.. ++.+|.+- .
T Consensus 154 --~~~--~~~~kviGlC~~~-~~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~ 228 (437)
T cd05298 154 --RRL--FPNARILNICDMP-IAIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPD 228 (437)
T ss_pred --HHH--CCCCCEEEECCcH-HHHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCccc
Confidence 554 7789999999864 457889999999999999999999 4432 23444211 0
Q ss_pred ---C---C-------------------CCCC-----C-CHH--------------HHHHHHHhhccchhhhHhhhccCCc
Q 016424 229 ---V---K-------------------PPCS-----F-TQE--------------ETEYLTNRIQNGGTEVVEAKAGAGS 263 (390)
Q Consensus 229 ---~---~-------------------v~~~-----~-~~~--------------~~~~l~~~v~~~~~eIi~~k~gkg~ 263 (390)
. . +++. + .++ .+++..+++.+...++.....-+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~ 308 (437)
T cd05298 229 SDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGS 308 (437)
T ss_pred ccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhh
Confidence 0 0 1110 0 111 1111111111000000000000000
Q ss_pred hhH--HHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424 264 ATL--SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH 337 (390)
Q Consensus 264 t~~--s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~ 337 (390)
... ..|.+++++++||++|.+ .+++++ +++|.| ++|+++|+||+||++|++++.- ++|++...++++.-.
T Consensus 309 ~~~~~~ya~~a~~ii~aI~~d~~---~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~l~~~~~ 384 (437)
T cd05298 309 TFHVDVHGEYIVDLAASIAYNTK---ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKGLMEQQV 384 (437)
T ss_pred hhhccchHHHHHHHHHHHHcCCC---eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHHHHHHHH
Confidence 111 146889999999999865 477787 678887 6799999999999999999865 799999988877443
No 42
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=5.3e-28 Score=243.63 Aligned_cols=280 Identities=23% Similarity=0.258 Sum_probs=191.4
Q ss_pred CCCEEEEEcCCCCcHHHHHH--HHHhCC--CCcEEEEEeCCc-hHHHHHHHhccc---CCCeEEEEeCCCChhhhhCCCc
Q 016424 40 AGFKVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-TPGVTADISHMD---TGAVVRGFLGQPQLENALTGMD 111 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~--~l~~~~--~~~eL~L~Di~~-~~g~a~DL~~~~---~~~~v~~~~~t~dl~~al~dAD 111 (390)
+.+||+|||| |+++.+-.. .|.+.+ .++||+|||+++ ......++.+.. ..+.+++.. |+|+++||+|||
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~-ttd~~eAl~gAd 79 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEA-TTDRREALEGAD 79 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCHHHHhcCCC
Confidence 4579999999 977666543 445554 478999999998 333334443321 234577655 689999999999
Q ss_pred EEEEcC---C---------CCCCCCCCH--------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 016424 112 LVIIPA---G---------VPRKPGMTR--------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 171 (390)
Q Consensus 112 iVIi~a---g---------~p~k~g~~r--------~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~ 171 (390)
||+.+. | +|.|+|..+ .....|++|++.+|++.|+++||+||++++|||+.++|..
T Consensus 80 fVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeA---- 155 (442)
T COG1486 80 FVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEA---- 155 (442)
T ss_pred EEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHH----
Confidence 999974 2 477777422 3456899999999999999999999999999999999754
Q ss_pred HHHhCCCCCCceeecccccHHHHHHHHHHHhCCCC-CCCceEEee-cccC---------ceeeecccc------------
Q 016424 172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-GHAG---------VTILPLLSQ------------ 228 (390)
Q Consensus 172 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p-~~V~~~ViG-~Hg~---------~t~vp~~S~------------ 228 (390)
+++. +|..|+||+|+.. .-....||+.||+++ +++++.+.| ||.. .+.+|.+..
T Consensus 156 v~r~--~~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~ 232 (442)
T COG1486 156 VRRL--YPKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEPE 232 (442)
T ss_pred HHHh--CCCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCccc
Confidence 4554 4545999999874 456899999999975 999999999 5543 122221110
Q ss_pred -------CC--------C---CCC-----------------------CCHHHHHHHHHhhccch--------hhhHhhhc
Q 016424 229 -------VK--------P---PCS-----------------------FTQEETEYLTNRIQNGG--------TEVVEAKA 259 (390)
Q Consensus 229 -------~~--------v---~~~-----------------------~~~~~~~~l~~~v~~~~--------~eIi~~k~ 259 (390)
.. + +.. ...+++.+..++..+.- -+..+
T Consensus 233 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~--- 309 (442)
T COG1486 233 NKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELE--- 309 (442)
T ss_pred cccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhh---
Confidence 00 0 000 01111111111111000 01111
Q ss_pred cCCch--hHHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 016424 260 GAGSA--TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLF 333 (390)
Q Consensus 260 gkg~t--~~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L 333 (390)
.++.+ .+ +.+++++++||++|++. ++.++ -++|.. |+|.++++||+||++|++++.. |+|++.-++++
T Consensus 310 ~~~~~~~~~--~e~a~~ii~Ai~~~~~~---~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~ 383 (442)
T COG1486 310 KRIGAGKYS--SEYASNIINAIENNKPS---RIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLM 383 (442)
T ss_pred hcCCccccc--HHHHHHHHHHHhcCCce---EEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHH
Confidence 11222 23 37889999999998763 55555 578875 8899999999999999999776 89999999988
Q ss_pred HHhH
Q 016424 334 CLLH 337 (390)
Q Consensus 334 ~~~~ 337 (390)
+...
T Consensus 384 ~~~i 387 (442)
T COG1486 384 HTNI 387 (442)
T ss_pred HHHH
Confidence 7544
No 43
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.96 E-value=1e-26 Score=237.83 Aligned_cols=278 Identities=19% Similarity=0.151 Sum_probs=193.8
Q ss_pred CEEEEEcCCCCcHHHHHH--HHHhC-CC-CcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeCCCChhhhhCCCcEE
Q 016424 42 FKVAILGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV 113 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~--~l~~~-~~-~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~t~dl~~al~dADiV 113 (390)
+||+|||| |++|++.++ .+++. .+ ..+|+|||+++ +.....++.+.. .....++.. ++|+++|++|||+|
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~-ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEA-TTDRREALDGADFV 78 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEE-eCCHHHHhcCCCEE
Confidence 59999999 999999887 45544 33 35999999998 455555555432 122334332 57999999999999
Q ss_pred EEcCCCCCCCCCCH----------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 016424 114 IIPAGVPRKPGMTR----------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 171 (390)
Q Consensus 114 Ii~ag~p~k~g~~r----------------------~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~ 171 (390)
|++++.+..+++++ .....+|++++.++++.+.++||++|++++|||++++|+++
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~--- 155 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL--- 155 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence 99988666555544 45678999999999999999999999999999999998654
Q ss_pred HHHhCCCCCCceeecccccHHHHHHHHHHHhCCCCCCCceEEee-cccC---------ceeeeccc-----------cCC
Q 016424 172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPLLS-----------QVK 230 (390)
Q Consensus 172 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~p~~V~~~ViG-~Hg~---------~t~vp~~S-----------~~~ 230 (390)
++.++ .|+||+|+. +.|++..+|+.+|+++++|+++++| ||.. ++.+|.+- ...
T Consensus 156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~ 230 (423)
T cd05297 156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLS 230 (423)
T ss_pred -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcc
Confidence 66554 799999876 7899999999999999999999999 5544 23444211 111
Q ss_pred -CC-----------C-------C------CCHHHHHH------------------HHHhhccchhhhHhh--hccCCchh
Q 016424 231 -PP-----------C-------S------FTQEETEY------------------LTNRIQNGGTEVVEA--KAGAGSAT 265 (390)
Q Consensus 231 -v~-----------~-------~------~~~~~~~~------------------l~~~v~~~~~eIi~~--k~gkg~t~ 265 (390)
++ . . ..++.... +........ ..+. ....+...
T Consensus 231 ~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 308 (423)
T cd05297 231 PVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLI--LAEIDKEELDPVKR 308 (423)
T ss_pred cchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhc--cchhcchhcccccc
Confidence 10 0 0 11111111 111111000 0000 00001111
Q ss_pred HHHHHHHHHHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhH
Q 016424 266 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLH 337 (390)
Q Consensus 266 ~s~A~a~~~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~ 337 (390)
.+..++++++||.+|.+. ++.++ .++|.. |+|.++++||+|+++|++++.- ++|++...++++.-.
T Consensus 309 --~~e~a~~ii~ai~~~~~~---~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~~~~ 378 (423)
T cd05297 309 --SGEYASPIIEALVTGKPR---RINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIRPRI 378 (423)
T ss_pred --chHHHHHHHHHHhcCCce---EEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHHHHH
Confidence 346789999999987653 45555 567775 7899999999999999999865 799999988887444
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.88 E-value=3.9e-22 Score=181.55 Aligned_cols=152 Identities=21% Similarity=0.240 Sum_probs=109.9
Q ss_pred EEEEEcCCCCcHHHHHH--HHHhCC--CCcEEEEEeCCc-hHH----HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEE
Q 016424 43 KVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-TPG----VTADISHMDTGAVVRGFLGQPQLENALTGMDLV 113 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~--~l~~~~--~~~eL~L~Di~~-~~g----~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiV 113 (390)
||+|||| |++..+... ++...+ ..+||+|||+|+ ... .+..+.... ..++++.. |+|+++|++|||||
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~~-ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVEA-TTDRREALEGADFV 77 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEEE-ESSHHHHHTTESEE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEEE-eCCHHHHhCCCCEE
Confidence 8999999 988777543 445544 357999999998 223 333333322 34555443 68999999999999
Q ss_pred EEcCC------------CCCCCCCCH----------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHH
Q 016424 114 IIPAG------------VPRKPGMTR----------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 171 (390)
Q Consensus 114 Ii~ag------------~p~k~g~~r----------~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~ 171 (390)
|++.. +|+|+|... ...+.|++|++.++++.|+++|||||++|+|||+.++|..+
T Consensus 78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~--- 154 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL--- 154 (183)
T ss_dssp EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence 99853 478877432 35678999999999999999999999999999999998544
Q ss_pred HHHhCCCCCCceeecccccHHHHHHHHHHHhCC
Q 016424 172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGL 204 (390)
Q Consensus 172 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v 204 (390)
.+. +|..|++|+|+.. .-....+|+.||+
T Consensus 155 -~r~--~~~~k~vGlCh~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 155 -SRY--TPKIKVVGLCHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp -HHH--STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred -HHh--CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence 444 4457999999864 4578899999874
No 45
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=6.7e-08 Score=96.95 Aligned_cols=116 Identities=18% Similarity=0.246 Sum_probs=87.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHH-------------HHHh-cccCCCeEEEEeCCCChhhhh
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-------------ADIS-HMDTGAVVRGFLGQPQLENAL 107 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a-------------~DL~-~~~~~~~v~~~~~t~dl~~al 107 (390)
|||+|||. |.||...+..|++.++ +++++|+++.+-.. .+|. +.....+++. |+|+++|+
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~ 74 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV 74 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence 79999999 9999999999999987 99999999721110 1121 1112245775 57999999
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHH
Q 016424 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAA 169 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~a 169 (390)
+++|+++|+.|.|.++.- ..+...+...++.|.++.+...+++. |-|++....+-.
T Consensus 75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~ 132 (414)
T COG1004 75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA 132 (414)
T ss_pred hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence 999999999999988743 35577889999999999877444444 789988776543
No 46
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.63 E-value=8.3e-08 Score=88.04 Aligned_cols=133 Identities=19% Similarity=0.278 Sum_probs=82.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHH-----------HH-hcccCCCeEEEEeCCCChhhhh
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTA-----------DI-SHMDTGAVVRGFLGQPQLENAL 107 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~-----------DL-~~~~~~~~v~~~~~t~dl~~al 107 (390)
|||+|||. |.||.++|..++..+. +++-+|+|+. ..+.. ++ .+.....+++. ++|..+++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ai 74 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEEAI 74 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh---hhhhhhhh
Confidence 79999999 9999999999999997 9999999971 11111 11 11111356776 35788899
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHHhCCCCCCceee
Q 016424 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLG 185 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~ae~~~~~s~~p~~kviG 185 (390)
++||++|++.+.|.+++.+ -+...+.+.++.|.++. ++.+|++= |=|++.+-.++..++.+.++.. .=|+
T Consensus 75 ~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~f~ 146 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--EDFH 146 (185)
T ss_dssp HH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TCEE
T ss_pred hccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cCCe
Confidence 9999999999999876431 23445666777777765 44544433 7888888766666677766532 3445
Q ss_pred ccc
Q 016424 186 VTM 188 (390)
Q Consensus 186 ~t~ 188 (390)
++.
T Consensus 147 la~ 149 (185)
T PF03721_consen 147 LAY 149 (185)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 47
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.63 E-value=8.2e-08 Score=87.62 Aligned_cols=118 Identities=24% Similarity=0.398 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hH---HHHHH-Hhcc----c--------CCCeEEEEeCCCChh
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP---GVTAD-ISHM----D--------TGAVVRGFLGQPQLE 104 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~---g~a~D-L~~~----~--------~~~~v~~~~~t~dl~ 104 (390)
||+|||| |.+|..++..++..+. +++|||.+. +. ....+ +... . ...+++. ++|++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE 74 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence 7999999 9999999999999988 999999987 11 11112 1111 0 1246665 36886
Q ss_pred hhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCce
Q 016424 105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 183 (390)
Q Consensus 105 ~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kv 183 (390)
++. |||+||-+. .++.++-+++...++++| |++++ .||-..+... ++.... . .|.|+
T Consensus 75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i~---~la~~~-~-~p~R~ 132 (180)
T PF02737_consen 75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSIS---ELAAAL-S-RPERF 132 (180)
T ss_dssp GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-HH---HHHTTS-S-TGGGE
T ss_pred HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCHH---HHHhcc-C-cCceE
Confidence 655 999999997 567889999999999999 67754 7887765542 221222 2 36778
Q ss_pred eeccc
Q 016424 184 LGVTM 188 (390)
Q Consensus 184 iG~t~ 188 (390)
+|+-.
T Consensus 133 ig~Hf 137 (180)
T PF02737_consen 133 IGMHF 137 (180)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88754
No 48
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.53 E-value=5.4e-07 Score=88.68 Aligned_cols=119 Identities=22% Similarity=0.320 Sum_probs=85.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH--HHHH-Hhcc---c---------CCCeEEEEeCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD-ISHM---D---------TGAVVRGFLGQPQ 102 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g--~a~D-L~~~---~---------~~~~v~~~~~t~d 102 (390)
.+||+|||| |.+|+.+|..++..++ +++|+|+++ + .+ .... |... . ...+++. ++|
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~---~~~ 76 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITP---TTD 76 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc---cCc
Confidence 469999999 9999999999998666 999999996 1 11 1111 1111 0 1134443 456
Q ss_pred hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181 (390)
Q Consensus 103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~ 181 (390)
+ ++++|||+||-++ .+|..+-+++...+.+++ |++++ .||-..+...-+++.+ ..|+
T Consensus 77 ~-~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia~~~-----~rpe 134 (307)
T COG1250 77 L-AALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELAEAL-----KRPE 134 (307)
T ss_pred h-hHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHHHHh-----CCch
Confidence 5 5899999999997 788999999999999999 78854 8999886554333322 3356
Q ss_pred ceeecc
Q 016424 182 KLLGVT 187 (390)
Q Consensus 182 kviG~t 187 (390)
|++|+.
T Consensus 135 r~iG~H 140 (307)
T COG1250 135 RFIGLH 140 (307)
T ss_pred hEEEEe
Confidence 788874
No 49
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.50 E-value=6.8e-07 Score=88.80 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=83.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h-HH----HHHHHhc---cc-----CCCeEEEEeCCCChhhhh
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PG----VTADISH---MD-----TGAVVRGFLGQPQLENAL 107 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~-~g----~a~DL~~---~~-----~~~~v~~~~~t~dl~~al 107 (390)
.||+|||+ |.+|+.++..++..++ +++|||+++ . .. +...+.. .. ...+++. ++++++++
T Consensus 8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~av 81 (321)
T PRK07066 8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEACV 81 (321)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHHh
Confidence 58999999 9999999999999988 999999986 1 11 1111111 10 1134554 35788999
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc
Q 016424 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT 187 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t 187 (390)
++||+|+.+. .+|..+-+++...+.+++|... |+.||-+.+...-++ ... -.|.|++|+.
T Consensus 82 ~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la---~~~--~~p~R~~g~H 141 (321)
T PRK07066 82 ADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFY---ARA--THPERCVVGH 141 (321)
T ss_pred cCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHH---Hhc--CCcccEEEEe
Confidence 9999999987 5667888889999999995432 568888876543222 222 2356777764
No 50
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.46 E-value=2.1e-06 Score=83.99 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHH---HHH-HH---hccc---------CCCeEEEEeCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG---VTA-DI---SHMD---------TGAVVRGFLGQP 101 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g---~a~-DL---~~~~---------~~~~v~~~~~t~ 101 (390)
...||+|||+ |.+|..+|..++..+. +++|||++. +.. ... .+ .+.. ...+++. ++
T Consensus 4 ~~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~ 77 (286)
T PRK07819 4 AIQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TT 77 (286)
T ss_pred CccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eC
Confidence 3459999999 9999999999999987 999999987 111 111 11 1110 0134554 45
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 016424 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYD 179 (390)
Q Consensus 102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p 179 (390)
|+ +++++||+||.+. .++..+-+++...++++| + ++++ +||-..+....++ .... .
T Consensus 78 ~~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~~~~la----~~~~-~ 135 (286)
T PRK07819 78 DL-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIPIMKLA----AATK-R 135 (286)
T ss_pred CH-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----hhcC-C
Confidence 77 7799999999997 567888888889999997 4 5543 7777765543332 2222 3
Q ss_pred CCceeeccccc
Q 016424 180 PKKLLGVTMLD 190 (390)
Q Consensus 180 ~~kviG~t~Ld 190 (390)
+.|++|+...+
T Consensus 136 ~~r~~g~hf~~ 146 (286)
T PRK07819 136 PGRVLGLHFFN 146 (286)
T ss_pred CccEEEEecCC
Confidence 56788876544
No 51
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.45 E-value=2e-06 Score=83.80 Aligned_cols=120 Identities=19% Similarity=0.307 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHH----Hhc-----ccC---------CCeEEEEeCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD----ISH-----MDT---------GAVVRGFLGQP 101 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~D----L~~-----~~~---------~~~v~~~~~t~ 101 (390)
.+||+|||+ |.+|..++..++..+. ++++||+++ ....+.+ +.+ ... ..+++. ++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~ 76 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT 76 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence 369999999 9999999999998886 899999986 1111111 111 000 124554 46
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP 180 (390)
Q Consensus 102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~ 180 (390)
|+.+++++||+||.+. ..+..+.+++.+.+.++++ ++++ ++|....... ++.... . .+
T Consensus 77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~sntSt~~~~---~~~~~~-~-~~ 135 (287)
T PRK08293 77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKTIF--ATNSSTLLPS---QFAEAT-G-RP 135 (287)
T ss_pred CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCCEE--EECcccCCHH---HHHhhc-C-Cc
Confidence 7888999999999996 3446677788888888875 4533 5666654332 222221 2 24
Q ss_pred Cceeecc
Q 016424 181 KKLLGVT 187 (390)
Q Consensus 181 ~kviG~t 187 (390)
.|++|+.
T Consensus 136 ~r~vg~H 142 (287)
T PRK08293 136 EKFLALH 142 (287)
T ss_pred ccEEEEc
Confidence 5777764
No 52
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.41 E-value=5.6e-06 Score=77.59 Aligned_cols=148 Identities=20% Similarity=0.138 Sum_probs=85.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|||+|||++|.+|++++..|...+. ++.++|.++ ....+.+..+... ....+... + +..++++++|+||++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~-~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG-A-DNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE-e-ChHHHHhcCCEEEEEC
Confidence 6999998449999999999998874 899999876 2333333322110 11112221 2 3368899999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCccc-----------HHHHHHHHHHhCCCCC-Cceee
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----------VPIAAEVFKKAGTYDP-KKLLG 185 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~-----------t~i~ae~~~~~s~~p~-~kviG 185 (390)
.. ..+.++.+.+...-++.++|-++||++.- ..-.+|.+++. +|+ .+|+.
T Consensus 77 p~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~--~p~~~~VVk 138 (219)
T TIGR01915 77 PW----------------DHVLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAAL--LPETSRVVA 138 (219)
T ss_pred CH----------------HHHHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHh--CCCCCeEee
Confidence 21 12333344444433456788889998751 00113444543 666 67886
Q ss_pred c-ccccHHHHHHHHHHHhCCCCCCCceEEeecc
Q 016424 186 V-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH 217 (390)
Q Consensus 186 ~-t~Lds~R~~~~la~~l~v~p~~V~~~ViG~H 217 (390)
. .++....+. . ...+.+...++.|++
T Consensus 139 a~~~~~a~~~~----~--~~~~~~~~~~v~Gdd 165 (219)
T TIGR01915 139 AFHNLSAVLLQ----D--VDDEVDCDVLVCGDD 165 (219)
T ss_pred ccccCCHHHhc----C--CCCCCCCCEEEECCC
Confidence 6 555432221 1 123334556666654
No 53
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.36 E-value=2.8e-06 Score=88.57 Aligned_cols=121 Identities=15% Similarity=0.164 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc---------------cCCCeEEEEeCCCChhh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---------------DTGAVVRGFLGQPQLEN 105 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~---------------~~~~~v~~~~~t~dl~~ 105 (390)
+|||+|||+ |.||.+++..|+..+..-+++.||+++.+ +..|... .....++. |+|+.+
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEK 74 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHH
Confidence 589999999 99999999999988654489999998721 1111110 01113444 467778
Q ss_pred hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHH
Q 016424 106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIA 168 (390)
Q Consensus 106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ 168 (390)
++++||++|++.+.|.+.+-...+ -.-+...+.+.++.|.++.+++.+++. |-|.++.-.+.
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~ 138 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIE 138 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHH
Confidence 999999999999999854210000 012345577888888888765544444 78888776554
No 54
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.31 E-value=3.1e-06 Score=92.49 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h--HH--HHHHHh-----cc--c------CCCeEEEEeCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTADIS-----HM--D------TGAVVRGFLGQP 101 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~--~g--~a~DL~-----~~--~------~~~~v~~~~~t~ 101 (390)
...||+|||| |.+|..++..++..++ +++|+|++. . .+ .+.++. +. . ...+++. ++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~ 385 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL 385 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence 4469999999 9999999999999998 999999987 1 11 111111 10 0 0235654 45
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180 (390)
Q Consensus 102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~ 180 (390)
|+ ++++|||+||-+. .++..+-+++-..++++| |+++ +.||-..+-..-+++ .. -.|
T Consensus 386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~i--lasnTS~l~i~~ia~----~~-~~p 443 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAI--LASNTSTISISLLAK----AL-KRP 443 (714)
T ss_pred CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHh----hc-CCc
Confidence 76 7799999999997 678899999999999999 5664 489998865433322 22 236
Q ss_pred Cceeecc
Q 016424 181 KKLLGVT 187 (390)
Q Consensus 181 ~kviG~t 187 (390)
.|++|+.
T Consensus 444 ~r~ig~H 450 (714)
T TIGR02437 444 ENFCGMH 450 (714)
T ss_pred ccEEEEe
Confidence 7888884
No 55
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.29 E-value=2.3e-06 Score=93.82 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=86.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH--HHHH-Hhcc------c------CCCeEEEEeCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD-ISHM------D------TGAVVRGFLGQP 101 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g--~a~D-L~~~------~------~~~~v~~~~~t~ 101 (390)
+..||+|||| |.+|..++..++..++ +++|+|++. + .+ ...+ +... . ...+++. ++
T Consensus 334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~ 407 (737)
T TIGR02441 334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL 407 (737)
T ss_pred cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence 3468999999 9999999999999988 999999987 1 21 1111 1110 0 1245665 45
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCC
Q 016424 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180 (390)
Q Consensus 102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~ 180 (390)
|+ ++++|||+||-+. .+|..+-+++...++++| |+++ +.||-..+-..-+++. . -.|
T Consensus 408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~i--lasNTSsl~i~~la~~----~-~~p 465 (737)
T TIGR02441 408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCI--IASNTSALPIKDIAAV----S-SRP 465 (737)
T ss_pred CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcE--EEEcCCCCCHHHHHhh----c-CCc
Confidence 76 6899999999987 678999999999999999 5664 4899988655333322 1 235
Q ss_pred Cceeecc
Q 016424 181 KKLLGVT 187 (390)
Q Consensus 181 ~kviG~t 187 (390)
.|++|+.
T Consensus 466 ~r~ig~H 472 (737)
T TIGR02441 466 EKVIGMH 472 (737)
T ss_pred cceEEEe
Confidence 7888873
No 56
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.29 E-value=4.9e-06 Score=91.02 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=85.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH--HHHH-Hh----cc--c------CCCeEEEEeCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD-IS----HM--D------TGAVVRGFLGQPQ 102 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g--~a~D-L~----~~--~------~~~~v~~~~~t~d 102 (390)
..||+|||| |.+|..++..++..++ +++|||+++ + .+ .+.+ +. +. . ...+++. ++|
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~ 386 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TLD 386 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eCC
Confidence 468999999 9999999999999998 999999997 1 11 1111 11 10 0 1245665 457
Q ss_pred hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181 (390)
Q Consensus 103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~ 181 (390)
+ ++++|||+||-+. .++..+-+++-..++++|| +++ +.||-..+-..-+++ .. . .|.
T Consensus 387 ~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~i--lasNTSsl~i~~la~---~~-~-~p~ 444 (715)
T PRK11730 387 Y-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTI--LASNTSTISISLLAK---AL-K-RPE 444 (715)
T ss_pred H-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcE--EEEcCCCCCHHHHHh---hc-C-CCc
Confidence 6 7799999999997 6778999999999999995 554 489998865433322 22 2 357
Q ss_pred ceeecc
Q 016424 182 KLLGVT 187 (390)
Q Consensus 182 kviG~t 187 (390)
|++|+.
T Consensus 445 r~~g~H 450 (715)
T PRK11730 445 NFCGMH 450 (715)
T ss_pred cEEEEe
Confidence 888874
No 57
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.29 E-value=2.8e-06 Score=75.62 Aligned_cols=92 Identities=25% Similarity=0.377 Sum_probs=64.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHh--ccc--------CCCeEEEEeCCCChhhhhCCCcE
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HMD--------TGAVVRGFLGQPQLENALTGMDL 112 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~--~~~--------~~~~v~~~~~t~dl~~al~dADi 112 (390)
||+|||| |+.|.++|..|..++. ++.||+.++. ...+|. |.. ....++. ++|+++++++||+
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~--~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~ 72 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEE--QIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADI 72 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHH--HHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHH--HHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccE
Confidence 8999999 9999999999999995 9999999862 222232 221 1134554 4699999999999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEec
Q 016424 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS 158 (390)
Q Consensus 113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~t 158 (390)
||++. | ....+++.+.+..+-+ +..+++++
T Consensus 73 Iiiav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 73 IIIAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp EEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred EEecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 99985 1 2236788888888874 44555443
No 58
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.28 E-value=5e-06 Score=90.87 Aligned_cols=120 Identities=18% Similarity=0.294 Sum_probs=86.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCc-h--HH--HHHHHh-----cc--c------CCCeEEEEeCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTADIS-----HM--D------TGAVVRGFLGQ 100 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~-~--~g--~a~DL~-----~~--~------~~~~v~~~~~t 100 (390)
...||+|||| |.+|..++..++ ..++ +++|+|++. . .+ .+.+.. +. . ...+++. +
T Consensus 308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~ 381 (708)
T PRK11154 308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T 381 (708)
T ss_pred cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence 3479999999 999999999988 7787 999999986 1 11 111111 10 0 1235665 4
Q ss_pred CChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 016424 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD 179 (390)
Q Consensus 101 ~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p 179 (390)
+|+ ++++|||+||-+. .+|.++.+++-..+++++ |++++ .||-..+...-+++.+ -.
T Consensus 382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la~~~-----~~ 439 (708)
T PRK11154 382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIAAAA-----AR 439 (708)
T ss_pred CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhc-----Cc
Confidence 576 7899999999997 678999999999999998 67644 7998886553333222 23
Q ss_pred CCceeecc
Q 016424 180 PKKLLGVT 187 (390)
Q Consensus 180 ~~kviG~t 187 (390)
|.|++|+.
T Consensus 440 p~r~ig~H 447 (708)
T PRK11154 440 PEQVIGLH 447 (708)
T ss_pred ccceEEEe
Confidence 56888874
No 59
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.28 E-value=7.1e-06 Score=89.58 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCc--h-HH--HHH-HHhcc----c--------CCCeEEEEeCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN--T-PG--VTA-DISHM----D--------TGAVVRGFLGQ 100 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~--~-~g--~a~-DL~~~----~--------~~~~v~~~~~t 100 (390)
+..||+|||| |.+|..++..++ ..++ +++|||+++ + .+ .+. .+... . ...+++. +
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~ 376 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T 376 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence 3469999999 999999999888 4787 999999987 1 11 111 11111 0 0235664 4
Q ss_pred CChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 016424 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD 179 (390)
Q Consensus 101 ~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p 179 (390)
+|+ ++++|||+||-+. .++..+-+++-.+++++|+ +++ +.||-..+...-+++.+ -.
T Consensus 377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~i--lasnTS~l~i~~la~~~-----~~ 434 (699)
T TIGR02440 377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTI--FASNTSSLPIGQIAAAA-----SR 434 (699)
T ss_pred CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcE--EEeCCCCCCHHHHHHhc-----CC
Confidence 576 6899999999997 6778999999999999995 554 48999886554333322 23
Q ss_pred CCceeecc
Q 016424 180 PKKLLGVT 187 (390)
Q Consensus 180 ~~kviG~t 187 (390)
|.|++|+.
T Consensus 435 p~r~~g~H 442 (699)
T TIGR02440 435 PENVIGLH 442 (699)
T ss_pred cccEEEEe
Confidence 56888874
No 60
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.27 E-value=9.3e-06 Score=78.86 Aligned_cols=120 Identities=21% Similarity=0.354 Sum_probs=78.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HHH--H----HHHhccc---------CCCeEEEEeCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T----ADISHMD---------TGAVVRGFLGQPQ 102 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g~--a----~DL~~~~---------~~~~v~~~~~t~d 102 (390)
+.||+|||+ |.+|..++..++..+. ++++||++. . .+. . .++.+.. ...+++. ++|
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~ 76 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD 76 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 358999999 9999999999998887 899999987 1 111 0 1111110 0124554 356
Q ss_pred hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181 (390)
Q Consensus 103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~ 181 (390)
+ +++++||+||++. ..+..+..++...+.++++ ++++ .||-.++....+++ ..+ .+.
T Consensus 77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la~----~~~-~~~ 134 (282)
T PRK05808 77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELAA----ATK-RPD 134 (282)
T ss_pred H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHH----hhC-CCc
Confidence 5 5689999999997 3445666788888888885 5544 67766655433322 222 245
Q ss_pred ceeeccc
Q 016424 182 KLLGVTM 188 (390)
Q Consensus 182 kviG~t~ 188 (390)
|++|+..
T Consensus 135 r~ig~h~ 141 (282)
T PRK05808 135 KVIGMHF 141 (282)
T ss_pred ceEEeec
Confidence 7888743
No 61
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.23 E-value=1.3e-05 Score=78.19 Aligned_cols=120 Identities=13% Similarity=0.233 Sum_probs=76.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHH--------Hh---cccC---------CCeEEEEeCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD--------IS---HMDT---------GAVVRGFLGQ 100 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~D--------L~---~~~~---------~~~v~~~~~t 100 (390)
.||+|||+ |.+|..++..++..+. ++++||+++ ....+.+ +. +... ..+++. +
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~ 77 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S 77 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence 58999999 9999999999999887 899999987 2111111 11 1000 122443 3
Q ss_pred CChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCC
Q 016424 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD 179 (390)
Q Consensus 101 ~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p 179 (390)
+++ +++++||+||.+. ..+..+..++.+.+.++++ ++++ +||-..+...-++ ... -.
T Consensus 78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~la---~~~--~~ 135 (291)
T PRK06035 78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEIA---TAL--ER 135 (291)
T ss_pred CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHHH---hhc--CC
Confidence 566 6899999999997 2334556777778888875 5644 5666655432222 221 12
Q ss_pred CCceeecccc
Q 016424 180 PKKLLGVTML 189 (390)
Q Consensus 180 ~~kviG~t~L 189 (390)
+.|++|+...
T Consensus 136 ~~r~ig~hf~ 145 (291)
T PRK06035 136 KDRFIGMHWF 145 (291)
T ss_pred cccEEEEecC
Confidence 5678887543
No 62
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.19 E-value=2.2e-06 Score=80.20 Aligned_cols=124 Identities=24% Similarity=0.333 Sum_probs=91.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc------hHHHHHHHhccc-----------------CCCeE
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTADISHMD-----------------TGAVV 94 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~------~~g~a~DL~~~~-----------------~~~~v 94 (390)
..+...|+|||| |.+|+.+|...++.++ .++|+|.++ .+++...+-+.. +..++
T Consensus 8 ~~~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri 84 (298)
T KOG2304|consen 8 MAEIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRI 84 (298)
T ss_pred cccccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHH
Confidence 355679999999 9999999999999998 899999997 133333333321 11244
Q ss_pred EEEeCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccH-HHHHHHHH
Q 016424 95 RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV-PIAAEVFK 173 (390)
Q Consensus 95 ~~~~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t-~i~ae~~~ 173 (390)
+. ++|..+++.|||+||-+. -+|+.+-+++.+.+++.|+..- |+.||...+.- .++ -.+
T Consensus 85 ~~---~tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~~-il~tNTSSl~lt~ia-~~~- 144 (298)
T KOG2304|consen 85 KT---STNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSST-ILATNTSSLSLTDIA-SAT- 144 (298)
T ss_pred HH---cCCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccce-EEeecccceeHHHHH-hhc-
Confidence 43 468889999999998775 8999999999999999996542 34899887543 322 111
Q ss_pred HhCCCCCCceeeccc
Q 016424 174 KAGTYDPKKLLGVTM 188 (390)
Q Consensus 174 ~~s~~p~~kviG~t~ 188 (390)
-+|.|+.|+.+
T Consensus 145 ----~~~srf~GlHF 155 (298)
T KOG2304|consen 145 ----QRPSRFAGLHF 155 (298)
T ss_pred ----cChhhhceeec
Confidence 35678999964
No 63
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.17 E-value=1.5e-05 Score=83.83 Aligned_cols=124 Identities=23% Similarity=0.330 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH--HH-HHHhcc---c---------CCCeEEEEeCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VT-ADISHM---D---------TGAVVRGFLGQP 101 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g--~a-~DL~~~---~---------~~~~v~~~~~t~ 101 (390)
+..||+|||+ |.+|+.++..++..++ ++++||++. + .+ .. ..+... . ...+++. ++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~ 77 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT 77 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence 3468999999 9999999999999987 999999987 1 11 11 111111 0 0134554 35
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181 (390)
Q Consensus 102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~ 181 (390)
|+ +++++||+||.+. .++..+-+++...+.+++|... |+.||-..+-..-+++.+. .|.
T Consensus 78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~-IlasnTStl~i~~iA~~~~-----~p~ 136 (503)
T TIGR02279 78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT-IIASNTSSLSITAIAAGLA-----RPE 136 (503)
T ss_pred CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEECCCCCCHHHHHHhcC-----ccc
Confidence 66 6789999999986 4556677777788999986543 3578887765432222221 245
Q ss_pred ceeeccccc
Q 016424 182 KLLGVTMLD 190 (390)
Q Consensus 182 kviG~t~Ld 190 (390)
|++|+..++
T Consensus 137 r~~G~HFf~ 145 (503)
T TIGR02279 137 RVAGLHFFN 145 (503)
T ss_pred ceEEEeccC
Confidence 666665443
No 64
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.16 E-value=2.4e-05 Score=76.40 Aligned_cols=122 Identities=21% Similarity=0.321 Sum_probs=75.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHH----HHhc----ccC--------CCeEEEEeCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA----DISH----MDT--------GAVVRGFLGQPQ 102 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~----DL~~----~~~--------~~~v~~~~~t~d 102 (390)
.+||+|||+ |.+|..++..++..+. ++++||.+. ...... .+.+ ... ..+++. +++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence 369999999 9999999999998887 999999986 111111 1111 100 023554 346
Q ss_pred hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181 (390)
Q Consensus 103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~ 181 (390)
+ +++++||+||++. | .+..+...+.+.+.+++ |++++ +||-..+-..-++ ... -.+.
T Consensus 78 ~-~~~~~aD~Vieav--p------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~s~la---~~~--~~~~ 135 (292)
T PRK07530 78 L-EDLADCDLVIEAA--T------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSISITRLA---SAT--DRPE 135 (292)
T ss_pred H-HHhcCCCEEEEcC--c------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH---hhc--CCcc
Confidence 6 5799999999986 2 22334455566777776 56644 3566554432121 221 2356
Q ss_pred ceeeccccc
Q 016424 182 KLLGVTMLD 190 (390)
Q Consensus 182 kviG~t~Ld 190 (390)
|++|+..++
T Consensus 136 r~~g~h~~~ 144 (292)
T PRK07530 136 RFIGIHFMN 144 (292)
T ss_pred cEEEeeccC
Confidence 888886655
No 65
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.11 E-value=3.4e-05 Score=75.86 Aligned_cols=120 Identities=23% Similarity=0.327 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcc----c-------CCCeEEEEeCCCChhhhh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----D-------TGAVVRGFLGQPQLENAL 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~----~-------~~~~v~~~~~t~dl~~al 107 (390)
.+||+|||+ |.+|..++..++..+. ++++||.+. .......+.+. . ...+++. ++|+.+++
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV 77 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence 469999999 9999999999998886 899999987 22211111110 0 0112343 35677789
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~ 186 (390)
++||+||++.- ....+..++...+..+++ ++++ .||...+...-++ .... .+.+++|+
T Consensus 78 ~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~~~~l~---~~~~--~~~~~ig~ 136 (311)
T PRK06130 78 SGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLPITAIA---QAVT--RPERFVGT 136 (311)
T ss_pred ccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCCHHHHH---hhcC--CcccEEEE
Confidence 99999999861 123334455556666664 4443 4665554432221 2221 24677877
Q ss_pred c
Q 016424 187 T 187 (390)
Q Consensus 187 t 187 (390)
.
T Consensus 137 h 137 (311)
T PRK06130 137 H 137 (311)
T ss_pred c
Confidence 4
No 66
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.09 E-value=2.3e-05 Score=76.34 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=73.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHH---HHh-----c--cc------CCCeEEEEeCCCCh
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA---DIS-----H--MD------TGAVVRGFLGQPQL 103 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~---DL~-----~--~~------~~~~v~~~~~t~dl 103 (390)
.||+|||+ |.+|..++..++..+. ++++||+++ ...... ++. . .. ....++. ++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence 58999999 9999999999998887 899999987 111111 110 0 00 0123443 3577
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 016424 104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 182 (390)
Q Consensus 104 ~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p-~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~k 182 (390)
.+++++||+||.+.. .+..+...+...+.++++ ++++ .+|...+-...+++ ... .+.+
T Consensus 76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt~~~~~l~~----~~~-~~~r 134 (288)
T PRK09260 76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTSTMSPTEIAS----FTK-RPER 134 (288)
T ss_pred HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHh----hcC-Cccc
Confidence 789999999999862 223445555566777774 5543 45555433222222 111 2456
Q ss_pred eeecccc
Q 016424 183 LLGVTML 189 (390)
Q Consensus 183 viG~t~L 189 (390)
++|+..+
T Consensus 135 ~~g~h~~ 141 (288)
T PRK09260 135 VIAMHFF 141 (288)
T ss_pred EEEEecC
Confidence 7777443
No 67
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.05 E-value=4.3e-05 Score=80.56 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=79.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--h-HH--HHHH-Hhcc---c---------CCCeEEEEeCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD-ISHM---D---------TGAVVRGFLGQPQ 102 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~-~g--~a~D-L~~~---~---------~~~~v~~~~~t~d 102 (390)
..||+|||+ |.+|..++..++..++ ++++||++. + .+ ...+ +... . ...+++. +++
T Consensus 7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~ 80 (507)
T PRK08268 7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEA 80 (507)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 468999999 9999999999999988 999999987 1 11 1111 1111 0 0134665 346
Q ss_pred hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181 (390)
Q Consensus 103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~ 181 (390)
+ +++++||+||.+. .++..+-+.+...++..+ |++++ +||-..+-..-+++ ... .|.
T Consensus 81 ~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~~la~----~~~-~p~ 138 (507)
T PRK08268 81 L-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSITAIAA----ALK-HPE 138 (507)
T ss_pred H-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHh----hcC-Ccc
Confidence 6 5689999999986 455667777777888888 56644 56665544322222 212 256
Q ss_pred ceeeccccc
Q 016424 182 KLLGVTMLD 190 (390)
Q Consensus 182 kviG~t~Ld 190 (390)
|++|+..++
T Consensus 139 r~~G~hff~ 147 (507)
T PRK08268 139 RVAGLHFFN 147 (507)
T ss_pred cEEEEeecC
Confidence 777775444
No 68
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.00 E-value=0.00011 Score=72.72 Aligned_cols=117 Identities=21% Similarity=0.380 Sum_probs=80.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhc--cc--------CCCeEEEEeCCCChhhhhCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MD--------TGAVVRGFLGQPQLENALTGM 110 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~--~~--------~~~~v~~~~~t~dl~~al~dA 110 (390)
++||+|||| |+-|.+++..|+.++. +++||..++ ..+.|+.. .. .+..++. ++|+.+++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCH--HHHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence 479999999 9999999999999985 999999986 23333432 21 1234443 67999999999
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec---CCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS---NPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (390)
Q Consensus 111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t---NPvd~~t~i~ae~~~~~s~~p~~kviG~ 186 (390)
|+||+.. | ...++++++++..+- ++..++.+| +|- ....+++++++. +|.++ +++
T Consensus 73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~--t~~l~seii~e~--l~~~~-~~v 131 (329)
T COG0240 73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPE--TGRLLSEIIEEE--LPDNP-IAV 131 (329)
T ss_pred CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCC--CcchHHHHHHHH--cCCCe-EEE
Confidence 9999974 2 335777777776443 678888886 333 223345666664 44444 444
No 69
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.99 E-value=0.00011 Score=75.35 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=78.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhccc----------------CCCeEEEEeCCCChhh
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN 105 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~----------------~~~~v~~~~~t~dl~~ 105 (390)
|||+|||. |.+|.+++..|+..+. +++.||++..+ +.+|.... ...+++. ++++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED 72 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence 58999999 9999999999998887 89999998621 12222210 0123443 357778
Q ss_pred hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHH
Q 016424 106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK 174 (390)
Q Consensus 106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~ae~~~~ 174 (390)
++++||+||++.+.|..... .-+...+.+.++.+.++. ++.++++. |-|.+....+..+++.+
T Consensus 73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 89999999999988865422 123444555566666654 55555544 46666665555455444
No 70
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.95 E-value=8.1e-05 Score=75.94 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=71.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc------------c--CCCeEEEEeCCCChhhhh
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------------D--TGAVVRGFLGQPQLENAL 107 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~------------~--~~~~v~~~~~t~dl~~al 107 (390)
|||+|||+ |.||.+++..++. +. +++.||+++.+ +..+... . ...+++. +++..++.
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~~---t~~~~~~~ 71 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFNA---TLDKNEAY 71 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEEE---ecchhhhh
Confidence 69999999 9999999987775 54 89999998721 1112210 0 1123332 45667888
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHH
Q 016424 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIA 168 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i~ 168 (390)
++||+||++.+.|...... .-+...++++++.|.+..|+.++++- |-|.+..-.+.
T Consensus 72 ~~ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~ 128 (388)
T PRK15057 72 RDADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMH 128 (388)
T ss_pred cCCCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHH
Confidence 9999999998777432211 12334455555666554566655544 67777765544
No 71
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.95 E-value=7.4e-05 Score=78.51 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHH-------Hhcc---c--CCCeEEEEeCCCChhhh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTAD-------ISHM---D--TGAVVRGFLGQPQLENA 106 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~D-------L~~~---~--~~~~v~~~~~t~dl~~a 106 (390)
.+||+|||+ |.+|+.++..++..+. +|.+||+++. ...... +... . ...+++. ++|+.++
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea 77 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEA 77 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHH
Confidence 369999999 9999999999999887 9999999871 111110 1100 0 0113443 3577789
Q ss_pred hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 016424 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 165 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t 165 (390)
+++||+|+.+. ..+..+..++...+.+++|... ++.||-.++..
T Consensus 78 ~~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~ 121 (495)
T PRK07531 78 VAGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP 121 (495)
T ss_pred hcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence 99999999986 2334455566666777775443 45777776554
No 72
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.94 E-value=0.00012 Score=72.26 Aligned_cols=123 Identities=21% Similarity=0.230 Sum_probs=74.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHH--------HHhcccC---------CCeEEEEeCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------GAVVRGFLGQPQ 102 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~--------DL~~~~~---------~~~v~~~~~t~d 102 (390)
++||+|||+ |.+|..++..++..+. +|++||.++. ...+. .+..... ..+++. ++|
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~ 75 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS 75 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence 468999999 9999999999999887 8999999861 11111 1211110 123444 357
Q ss_pred hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCc
Q 016424 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 182 (390)
Q Consensus 103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~k 182 (390)
+.+++++||+|+.+. ..+..+...+...+.+.+++..++ .||-......-++ .... .+.+
T Consensus 76 ~~~a~~~ad~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~~~~la---~~~~--~~~~ 135 (308)
T PRK06129 76 LADAVADADYVQESA--------------PENLELKRALFAELDALAPPHAIL-ASSTSALLASAFT---EHLA--GRER 135 (308)
T ss_pred HHHhhCCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCcceE-EEeCCCCCHHHHH---HhcC--Cccc
Confidence 878899999999986 122334444555677777655444 4555444332222 2221 2456
Q ss_pred eeecccc
Q 016424 183 LLGVTML 189 (390)
Q Consensus 183 viG~t~L 189 (390)
+++...+
T Consensus 136 ~~~~hp~ 142 (308)
T PRK06129 136 CLVAHPI 142 (308)
T ss_pred EEEEecC
Confidence 7776544
No 73
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.91 E-value=0.00013 Score=71.32 Aligned_cols=123 Identities=21% Similarity=0.327 Sum_probs=76.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHH--------HHHhcccC---------CCeEEEEeCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT--------ADISHMDT---------GAVVRGFLGQPQ 102 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a--------~DL~~~~~---------~~~v~~~~~t~d 102 (390)
..||+|||+ |.+|..++..++..+. +|++||.+. ....+ .++.+... ...++. +++
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~ 77 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTN 77 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCC
Confidence 468999999 9999999999998886 999999986 11111 11211110 012333 345
Q ss_pred hhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCC
Q 016424 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181 (390)
Q Consensus 103 l~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~ 181 (390)
+ +++++||+||.+. ..+..+...+...+.+++ |++++ +||-..+...-++ .... .+.
T Consensus 78 ~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~~~~l~----~~~~-~~~ 135 (295)
T PLN02545 78 L-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSISITRLA----SATQ-RPQ 135 (295)
T ss_pred H-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----hhcC-CCc
Confidence 5 6799999999986 334455566666677776 55643 4666655432222 2211 246
Q ss_pred ceeecccccH
Q 016424 182 KLLGVTMLDV 191 (390)
Q Consensus 182 kviG~t~Lds 191 (390)
+++|+..++.
T Consensus 136 r~~g~h~~~p 145 (295)
T PLN02545 136 QVIGMHFMNP 145 (295)
T ss_pred ceEEEeccCC
Confidence 8888865554
No 74
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.84 E-value=7.1e-05 Score=60.42 Aligned_cols=94 Identities=21% Similarity=0.241 Sum_probs=63.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEE-eCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 43 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~-Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
||+|||+ |++|+.++..+...+ ...++.++ +.+. ..+.++.... . +..+ +.+..+++++||+||++.-
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence 8999999 999999999888877 34588866 8875 2223332221 1 2222 2245799999999999972
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160 (390)
Q Consensus 121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP 160 (390)
|. .+.++++.+....++..+|-++||
T Consensus 71 --p~------------~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --PQ------------QLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --GG------------GHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --HH------------HHHHHHHHHhhccCCCEEEEeCCC
Confidence 22 256777777556688888888876
No 75
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.79 E-value=0.00019 Score=70.51 Aligned_cols=101 Identities=22% Similarity=0.342 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhccc------CCCeEEEEeCCCChhhhhCCCcE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD------TGAVVRGFLGQPQLENALTGMDL 112 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~------~~~~v~~~~~t~dl~~al~dADi 112 (390)
||||+|||+ |.+|+.++..|...+. ++.+||.+.. .....+..+.. ....++. +++..+++++||+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL 74 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence 579999999 9999999999998876 8999999752 22222111110 0112333 3466678899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 016424 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS 163 (390)
Q Consensus 113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~ 163 (390)
||++... ..+.++.+.+..+. |+.+++..+|-++.
T Consensus 75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 9998631 12345555565553 67788888776553
No 76
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.71 E-value=0.00033 Score=68.30 Aligned_cols=123 Identities=11% Similarity=0.143 Sum_probs=73.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHh-ccc-CCCeEEEE-eCCCChhhhhCCCcEEEEcCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-HMD-TGAVVRGF-LGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~-~~~-~~~~v~~~-~~t~dl~~al~dADiVIi~ag 118 (390)
|||+|||+ |.+|..++..|...+. ++.+++..+......+-. ... ...+.... ...+|..++.+++|+||++..
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 69999999 9999999999998876 899999832111111100 000 00111110 012455555689999999863
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcee-eccccc
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTMLD 190 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~t~Ld 190 (390)
.+. +.++.+.+..+ .++..|+.+.|.++.... +.+. +++.+++ |++...
T Consensus 78 ~~~----------------~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~-----l~~~--~~~~~v~~g~~~~~ 128 (305)
T PRK12921 78 AYQ----------------LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ-----LEPY--FGRERVLGGVVFIS 128 (305)
T ss_pred ccC----------------HHHHHHHHHhhcCCCCEEEEeeCCCChHHH-----HHHh--CCcccEEEEEEEEE
Confidence 221 33444555554 367778888999875532 2332 5666777 445443
No 77
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.71 E-value=0.00046 Score=67.05 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=71.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h-HHHHHHHhcc-cCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~-~g~a~DL~~~-~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
|||+|||+ |.+|+.++..|...+. ++.++|.+. . .....+-... ......... .+++..+ ++++|+||++..
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~-~~~~d~vila~k 75 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGEITVPVL-AADDPAE-LGPQDLVILAVK 75 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCceeeccc-CCCChhH-cCCCCEEEEecc
Confidence 68999999 9999999999998875 899999864 1 1111110000 000011111 1345544 499999999973
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcee-ecccc
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTML 189 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~t~L 189 (390)
... ..++.+.+..+ .++..|+...|.++....+ .+. +++.+++ |++..
T Consensus 76 ~~~----------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l-----~~~--~~~~~i~~~~~~~ 125 (304)
T PRK06522 76 AYQ----------------LPAALPSLAPLLGPDTPVLFLQNGVGHLEEL-----AAY--IGPERVLGGVVTH 125 (304)
T ss_pred ccc----------------HHHHHHHHhhhcCCCCEEEEecCCCCcHHHH-----HHh--cCcccEEEEEEEE
Confidence 221 33444445443 4677888899998765432 222 4455665 44443
No 78
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.69 E-value=0.00053 Score=70.82 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC------------CCeEEEEeCCCChhhh
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLENA 106 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~------------~~~v~~~~~t~dl~~a 106 (390)
..+|||+|||. |.||.+++..++.. . +++.||+++. .+.+|..... ...+.. +++. ++
T Consensus 4 ~~~mkI~vIGl-GyvGlpmA~~la~~-~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~~-~~ 73 (425)
T PRK15182 4 IDEVKIAIIGL-GYVGLPLAVEFGKS-R--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKF---TSEI-EK 73 (425)
T ss_pred CCCCeEEEECc-CcchHHHHHHHhcC-C--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeE---EeCH-HH
Confidence 34689999999 99999999988774 4 9999999872 2233332110 112333 3454 57
Q ss_pred hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHHHHHHHH
Q 016424 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK 174 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~ae~~~~ 174 (390)
+++||+||++.+.|.+.... .+..-+....+.|.++. ++.++|+- |-|.+....++...+.+
T Consensus 74 ~~~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~ 137 (425)
T PRK15182 74 IKECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILAR 137 (425)
T ss_pred HcCCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHh
Confidence 99999999999998754221 22334444555666655 45555443 67777665444344443
No 79
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.67 E-value=0.00053 Score=68.09 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHh-cccC---------CCeEEEEeCCCChhhhhCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-HMDT---------GAVVRGFLGQPQLENALTGM 110 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~-~~~~---------~~~v~~~~~t~dl~~al~dA 110 (390)
+|||+|||+ |.+|+.++..|...+. ++.++|.++......... +... ..+++. +++. ++++++
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 74 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAF---STDP-AALATA 74 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEe---ccCh-hhccCC
Confidence 479999999 9999999999998886 899999864211111100 0000 011222 3455 678999
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCccc
Q 016424 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNST 164 (390)
Q Consensus 111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~ 164 (390)
|+||++...+. ..++.+.+..+ .++.+|+..+|.++..
T Consensus 75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 99999874332 12334455554 4677787788987654
No 80
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.65 E-value=0.00034 Score=70.08 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc----cC-------CCeEEEEeCCCChhhh
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT-------GAVVRGFLGQPQLENA 106 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~----~~-------~~~v~~~~~t~dl~~a 106 (390)
.+++|||+|||+ |.+|+.++..|..++ ++++|..++. .+.++... .. ...++. ++|+.++
T Consensus 4 ~~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~--~~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a 74 (341)
T PRK12439 4 AKREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAE--TADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEA 74 (341)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHH--HHHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHH
Confidence 467899999999 999999999999887 3678887652 22223211 11 113333 4577889
Q ss_pred hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcc
Q 016424 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNS 163 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~ 163 (390)
++++|+||++.- ...++++.+.+..+ .++..++.++|-++.
T Consensus 75 ~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 75 ANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 999999999862 22355666666655 367788888887764
No 81
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.60 E-value=0.00049 Score=64.19 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
||+++|+|+ |++|+.++..+...+. |+.+--.+..+..+..-... .+.++.. +.++|.+.||+||++. |
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~~----~~~dA~~~aDVVvLAV--P 69 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITGG----SNEDAAALADVVVLAV--P 69 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--ccccccC----ChHHHHhcCCEEEEec--c
Confidence 689999999 9999999999999887 87777666522222211211 2345542 3479999999999985 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (390)
Q Consensus 121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv 161 (390)
. .. +.++.+.+...-.+-++|-.|||.
T Consensus 70 ~----------~a----~~~v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 70 F----------EA----IPDVLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred H----------HH----HHhHHHHHHHHhCCeEEEecCCCc
Confidence 1 22 334444444433467788889995
No 82
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=97.58 E-value=0.0008 Score=69.66 Aligned_cols=114 Identities=15% Similarity=0.046 Sum_probs=76.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
.+.|||.|+||+|.||+.++..|...+. +|+.+|.... +...++.+.....+++.+.+ +-+..++.++|+||-+|+
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlAa 193 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLAC 193 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccCCCEEEECce
Confidence 3459999999999999999999988876 8999997531 11111111111124444332 223456789999999987
Q ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 119 VPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 119 ~p~--k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
... ....+..+.+..|+.....+.+.+.+.+ ..+|+++
T Consensus 194 ~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~S 233 (436)
T PLN02166 194 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTS 233 (436)
T ss_pred eccchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEEC
Confidence 432 2223456778899999999999998875 3555554
No 83
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.58 E-value=0.0009 Score=68.89 Aligned_cols=110 Identities=22% Similarity=0.213 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc--c--------------CCCeEEEEeCCCChh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--------------TGAVVRGFLGQPQLE 104 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~--~--------------~~~~v~~~~~t~dl~ 104 (390)
++||+|||. |.+|.+++..|+..+. +++.||+++.+-.. +... . ....++. +++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~-- 72 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT-- 72 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ecc--
Confidence 479999999 9999999999999886 89999998722111 2211 0 0122332 223
Q ss_pred hhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCcccHHHH
Q 016424 105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIA 168 (390)
Q Consensus 105 ~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~-tNPvd~~t~i~ 168 (390)
+++||+||++...|.+... ..+...+.+.++.|.++. ++.+||+- |.|....-.+.
T Consensus 73 --~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~ 130 (415)
T PRK11064 73 --PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMA 130 (415)
T ss_pred --cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHH
Confidence 3589999999988865432 223445556667777765 55665555 56877765554
No 84
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.57 E-value=0.00058 Score=67.61 Aligned_cols=117 Identities=16% Similarity=0.352 Sum_probs=72.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhc----cc------CCCeEEEEeCCCChhhhh-CCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH----MD------TGAVVRGFLGQPQLENAL-TGM 110 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~----~~------~~~~v~~~~~t~dl~~al-~dA 110 (390)
|||+|||| |.+|+.++..|...+. ++.||+.++. .+..+.. .. ....++. ++|+.+++ .++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence 68999999 9999999999998875 8899999752 2222221 11 1123444 35676776 589
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-h-CCCcEEEEecCCCcccH-HHHHHHHHHhCCCCCCcee
Q 016424 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVNSTV-PIAAEVFKKAGTYDPKKLL 184 (390)
Q Consensus 111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~-~-~p~a~iiv~tNPvd~~t-~i~ae~~~~~s~~p~~kvi 184 (390)
|+||++.. ..-+.++.+.+.. + .++..++..+|=.+.-+ .+..+.+.+. +|..++.
T Consensus 73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~--~~~~~~~ 131 (326)
T PRK14620 73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEI--LPNNPIA 131 (326)
T ss_pred CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHH--cCCCceE
Confidence 99999861 1224455555554 3 46777787888764310 1123444543 4444544
No 85
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.56 E-value=0.00065 Score=68.79 Aligned_cols=99 Identities=15% Similarity=0.262 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCC-----CcEEEEEeCCch---HHHHHHHhc--cc--------CCCeEEEEeCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISH--MD--------TGAVVRGFLGQP 101 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~-----~~eL~L~Di~~~---~g~a~DL~~--~~--------~~~~v~~~~~t~ 101 (390)
+.+||+|||+ |.-|+++|..|..++. ..++.||..++. ...+.++.+ .. .+..++. ++
T Consensus 10 ~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~---ts 85 (365)
T PTZ00345 10 GPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVA---VS 85 (365)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEE---ec
Confidence 3479999999 9999999999988752 248999998862 234555653 21 1234554 46
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--hC-CCcEEEEec
Q 016424 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK--CC-PNATVNLIS 158 (390)
Q Consensus 102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~--~~-p~a~iiv~t 158 (390)
|+.+++++||+||++. | ...++++++.+.. +- +++++|.++
T Consensus 86 dl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 86 DLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred CHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 8889999999999875 1 2346677777775 32 355565554
No 86
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.52 E-value=0.00056 Score=67.38 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
..|||+|||+ |.+|++++..|...+. +|.+||.+.. +++.+++++||+||++.-
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp- 56 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS- 56 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC-
Confidence 3579999999 9999999999999887 8999998741 245688899999999862
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNP 160 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~tNP 160 (390)
...+.++++.+..+ .++.+++..|+.
T Consensus 57 ---------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 57 ---------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred ---------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 12355566666553 467788887873
No 87
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.48 E-value=0.00083 Score=67.46 Aligned_cols=96 Identities=22% Similarity=0.385 Sum_probs=64.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC------CCcEEEEEeCCc---hHHHHHHHh--ccc--C------CCeEEEEeCCCCh
Q 016424 43 KVAILGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMD--T------GAVVRGFLGQPQL 103 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~------~~~eL~L~Di~~---~~g~a~DL~--~~~--~------~~~v~~~~~t~dl 103 (390)
||+|||+ |+.|.+++..|..++ +..++.||..++ -..++..++ |.. . +..++. ++|+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl 76 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL 76 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence 7999999 999999999998876 225999999843 222333333 221 1 224554 4689
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424 104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 158 (390)
Q Consensus 104 ~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t 158 (390)
.+++++||+||++. | ...++++++.+..+- ++..++.+|
T Consensus 77 ~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 77 VEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 99999999999984 2 234666666666553 455566664
No 88
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.48 E-value=0.00095 Score=66.22 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc--------c--CCCeEEEEeCCCChhhhhCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--------D--TGAVVRGFLGQPQLENALTGM 110 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~--------~--~~~~v~~~~~t~dl~~al~dA 110 (390)
+|||+|||+ |.+|+.++..|...+. ++.+||.+.... .++... . ....++. ++++.++++++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~a 75 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFA--AALAAERENREYLPGVALPAELYP---TADPEEALAGA 75 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCC
Confidence 689999999 9999999999998876 899999975221 112111 0 0112333 34677889999
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (390)
Q Consensus 111 DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd 162 (390)
|+||++.... .++++.+ ...|+..++.++|.++
T Consensus 76 D~Vi~~v~~~----------------~~~~v~~---~l~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 76 DFAVVAVPSK----------------ALRETLA---GLPRALGYVSCAKGLA 108 (328)
T ss_pred CEEEEECchH----------------HHHHHHH---hcCcCCEEEEEeeccc
Confidence 9999986211 0233332 2346777888888654
No 89
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.47 E-value=0.00066 Score=60.67 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|+||++||. |.+|+.++..|...+. +|+.||++. ..+.++.+.. ++.. .++.+++++||+|+++.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeec
Confidence 689999999 9999999999998887 899999875 2233344322 4432 46789999999999984
No 90
>PLN00198 anthocyanidin reductase; Provisional
Probab=97.42 E-value=0.0034 Score=61.94 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEE
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI 114 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVI 114 (390)
++++|.|.||+|.+|+.++..|...+. +|+.++.+. ......++.......+++.+.+ ..++.++++++|+||
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 357999999999999999999988876 777676654 2222122221111123443332 123556788999999
Q ss_pred EcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 115 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 115 i~ag~p~k~g~~-r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
-.|+.......+ ..+++..|+.-...+.+.+.+...-..++++|
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~S 130 (338)
T PLN00198 86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTS 130 (338)
T ss_pred EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEee
Confidence 988743221122 23456789999999999888764223444443
No 91
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.41 E-value=0.0011 Score=65.51 Aligned_cols=122 Identities=16% Similarity=0.272 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHH---HhcccCC---CeEEEEeCCCChhhhhCCCcE
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD---ISHMDTG---AVVRGFLGQPQLENALTGMDL 112 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~D---L~~~~~~---~~v~~~~~t~dl~~al~dADi 112 (390)
..+|||+|||+ |.+|..++..|...+. ++.+++.+........ +...... ..+... ++. ++...+|+
T Consensus 3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~-~~~~~~D~ 75 (313)
T PRK06249 3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAY---RSA-EDMPPCDW 75 (313)
T ss_pred CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEE---cch-hhcCCCCE
Confidence 34589999999 9999999999998876 8899988762211110 0000000 112221 232 45789999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-cccc
Q 016424 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD 190 (390)
Q Consensus 113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Ld 190 (390)
||++..... ..++.+.+... .|++.++...|=++..- .+.+. +|+.+|++- +...
T Consensus 76 vilavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~~--~~~~~v~~g~~~~~ 132 (313)
T PRK06249 76 VLVGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLREI--LPAEHLLGGLCFIC 132 (313)
T ss_pred EEEEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHHH--CCCCcEEEEeeeEe
Confidence 999963221 12333344443 47888888999887543 23332 677787754 5543
No 92
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=97.40 E-value=0.004 Score=60.67 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhccc-CCCeEEEEeC----CCChhhhhCCCcEE
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD-TGAVVRGFLG----QPQLENALTGMDLV 113 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~-~~~~v~~~~~----t~dl~~al~dADiV 113 (390)
+.+||.|+||+|.+|+.++..|...+. +++.++.+.. ......+.... ...+++.+.+ ..++.++++++|+|
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 357999999999999999999988886 7877777652 11122222111 0123333322 23466788999999
Q ss_pred EEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEe
Q 016424 114 IIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKC-CPNATVNLI 157 (390)
Q Consensus 114 Ii~ag~p~k~g~~-r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~ 157 (390)
|-.++........ ..+.+..|+.-...+.+.+.+. ... .++++
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~ 125 (322)
T PLN02662 81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVT 125 (322)
T ss_pred EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc
Confidence 9998754321122 2356778999899999888765 333 34444
No 93
>PLN02427 UDP-apiose/xylose synthase
Probab=97.35 E-value=0.0022 Score=64.69 Aligned_cols=115 Identities=16% Similarity=0.071 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcc---cCCCeEEEEeC----CCChhhhhCCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHM---DTGAVVRGFLG----QPQLENALTGM 110 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~---~~~~~v~~~~~----t~dl~~al~dA 110 (390)
.++|||.|+||+|.+|+.++..|...+ . +|+.+|.+... ...+... ....+++...+ ..++.++++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~--~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDK--IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchh--hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 346899999999999999999888764 4 88888875411 1112111 01123444332 12456778899
Q ss_pred cEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424 111 DLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 111 DiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
|+||-+|+...... ....+.+..|+.-...+.+...+.. ..++.+|.
T Consensus 88 d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS 136 (386)
T PLN02427 88 DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST 136 (386)
T ss_pred CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence 99999987542211 2223455677776777777776654 35665553
No 94
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.32 E-value=0.0012 Score=64.67 Aligned_cols=77 Identities=25% Similarity=0.324 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
.+..||+|+|| |++|.++++.|...+ +.+|.++|++. +++.+.++.+... .+.... .+++.++++++|+||.+
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G-~~~I~I~nR~~~ka~~la~~l~~~~~--~~~~~~-~~~~~~~~~~aDiVIna 199 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLG-VERLTIFDVDPARAAALADELNARFP--AARATA-GSDLAAALAAADGLVHA 199 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhCC--CeEEEe-ccchHhhhCCCCEEEEC
Confidence 34579999999 999999999998877 56899999987 4556666655321 223221 23556678999999997
Q ss_pred --CCCC
Q 016424 117 --AGVP 120 (390)
Q Consensus 117 --ag~p 120 (390)
+|.+
T Consensus 200 Tp~Gm~ 205 (284)
T PRK12549 200 TPTGMA 205 (284)
T ss_pred CcCCCC
Confidence 5553
No 95
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=97.30 E-value=0.0047 Score=61.03 Aligned_cols=113 Identities=18% Similarity=0.247 Sum_probs=75.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI 114 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVI 114 (390)
.++|.|+||+|++|+.++..|+..+...+|+++|.+... ....++.. ..+..+.+ ..++.+++++.|+||
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 468999999999999999988876533488999976522 12222221 23333322 124556788999999
Q ss_pred EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 115 i~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
..+|....+ ..+..+.+..|+.-...+.+.+.+.+.. .++++|
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 998864322 2344567889999899999988876533 455554
No 96
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=97.28 E-value=0.0012 Score=64.89 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=75.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEE----EeCC----CChhhhhC--CCc
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG----FLGQ----PQLENALT--GMD 111 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~----~~~t----~dl~~al~--dAD 111 (390)
|.|.||+|++|+.++..|+..++ .+|+|+|.++ +.....++.......+++. ..++ ..+..+++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 67999999999999998888764 6899999998 4555566642211122221 1221 23456777 999
Q ss_pred EEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCcccH
Q 016424 112 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNSTV 165 (390)
Q Consensus 112 iVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t----NPvd~~t 165 (390)
+|+-+|....-|- ..-.+.+..|+-=-+.+++...+++-+-+|.+-| ||+++|-
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHH
Confidence 9999987544332 2446778899999999999999988777666654 7877763
No 97
>PLN02650 dihydroflavonol-4-reductase
Probab=97.27 E-value=0.0064 Score=60.43 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcc-cCCCeEEEEeC----CCChhhhhCCCcE
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFLG----QPQLENALTGMDL 112 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~-~~~~~v~~~~~----t~dl~~al~dADi 112 (390)
+..++|.|.||+|.+|+.++..|+..+. +|++++.+. ......++... ....++..+.+ ...+.++++++|+
T Consensus 3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ 80 (351)
T PLN02650 3 SQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG 80 (351)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence 3456999999999999999999988876 788777765 11111222211 11122333222 1245677889999
Q ss_pred EEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 113 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 113 VIi~ag~p~k~g~~-r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
||-+++.......+ ..+.+..|+.-...+.+.+.++..-..++++|
T Consensus 81 ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S 127 (351)
T PLN02650 81 VFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS 127 (351)
T ss_pred EEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 99998743211112 23566788888888888887765323555554
No 98
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.25 E-value=0.0014 Score=56.97 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
-+..+|.|||| |++|..++..|...+ +.+|.+++++. +...+..+ ....+.... .+++.+.+.++|+||.+
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g-~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALG-AKEITIVNRTPERAEALAEEF----GGVNIEAIP-LEDLEEALQEADIVINA 82 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTT-SSEEEEEESSHHHHHHHHHHH----TGCSEEEEE-GGGHCHHHHTESEEEE-
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHc----Cccccceee-HHHHHHHHhhCCeEEEe
Confidence 45679999999 999999999998886 46899999975 23333333 223455543 35777889999999998
Q ss_pred CCCCC
Q 016424 117 AGVPR 121 (390)
Q Consensus 117 ag~p~ 121 (390)
.+.+.
T Consensus 83 T~~~~ 87 (135)
T PF01488_consen 83 TPSGM 87 (135)
T ss_dssp SSTTS
T ss_pred cCCCC
Confidence 76654
No 99
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.25 E-value=0.0028 Score=58.89 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=49.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH-------------H--HHHHHhcccCCCeEEEEeC-
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP-------------G--VTADISHMDTGAVVRGFLG- 99 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~-------------g--~a~DL~~~~~~~~v~~~~~- 99 (390)
..||.|+|+ |++|+.++..|+..+ +.+|+|+|.+. +. . ...-|.+.....++..+..
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAG-IGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcC-CCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 359999999 999999999999888 46899999982 10 0 1112222222234443221
Q ss_pred --CCChhhhhCCCcEEEEcC
Q 016424 100 --QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 100 --t~dl~~al~dADiVIi~a 117 (390)
.+++.+.++++|+||-+.
T Consensus 99 i~~~~~~~~~~~~DlVi~a~ 118 (200)
T TIGR02354 99 ITEENIDKFFKDADIVCEAF 118 (200)
T ss_pred CCHhHHHHHhcCCCEEEECC
Confidence 234455688999999884
No 100
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0039 Score=63.48 Aligned_cols=153 Identities=22% Similarity=0.173 Sum_probs=85.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhccc-CCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~-~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
|+||.|||| |+||++++..|++++. .+|++-|.... ...+.+..+.. ....+... ....+.+.+++.|+||.++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAA-DVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEeccc-ChHHHHHHHhcCCEEEEeCC
Confidence 579999999 9999999999999885 79999999752 22222222111 01222221 12356789999999999974
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeecc---cccHHHHH
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT---MLDVVRAN 195 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~t---~Lds~R~~ 195 (390)
.+. -..+++++.+..-+ ++-.|+-.+.. .-..+.+++++. .=++++. -++..-+.
T Consensus 78 ~~~----------------~~~i~ka~i~~gv~--yvDts~~~~~~-~~~~~~a~~Agi---t~v~~~G~dPGi~nv~a~ 135 (389)
T COG1748 78 PFV----------------DLTILKACIKTGVD--YVDTSYYEEPP-WKLDEEAKKAGI---TAVLGCGFDPGITNVLAA 135 (389)
T ss_pred chh----------------hHHHHHHHHHhCCC--EEEcccCCchh-hhhhHHHHHcCe---EEEcccCcCcchHHHHHH
Confidence 332 11344444444322 44455555543 333344455431 1122221 13333334
Q ss_pred HHHHHHhCCCCCCCceEE--eecccC
Q 016424 196 TFVAEVLGLDPRDVDVPV--VGGHAG 219 (390)
Q Consensus 196 ~~la~~l~v~p~~V~~~V--iG~Hg~ 219 (390)
+...+.. =..++++.++ +|+|+.
T Consensus 136 ~a~~~~~-~~i~si~iy~g~~g~~~~ 160 (389)
T COG1748 136 YAAKELF-DEIESIDIYVGGLGEHGD 160 (389)
T ss_pred HHHHHhh-ccccEEEEEEecCCCCCC
Confidence 4444443 2566666665 458883
No 101
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.22 E-value=0.0041 Score=55.49 Aligned_cols=93 Identities=25% Similarity=0.310 Sum_probs=66.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcEEEEcCCC
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADiVIi~ag~ 119 (390)
|+|+||+|.+|+.++..|...+. +|+++-.+..+. .+ ...++.+.++ +++.++++++|.||.+.|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~--~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKA--ED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGH--HH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhc--cc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 78999999999999999999885 888888876321 11 2344444432 2457889999999999976
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
+.+ ....++.+.+.+++.... .++++|
T Consensus 71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hcc-----------cccccccccccccccccc-cceeee
Confidence 654 166777888888776533 444443
No 102
>PLN02206 UDP-glucuronate decarboxylase
Probab=97.21 E-value=0.0035 Score=65.02 Aligned_cols=113 Identities=17% Similarity=0.091 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
+.|||.|+||+|.||+.++..|...+. +|+.+|.... +....+.+.....+++...+. -+..++.++|+||-+|+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~-~~~~~~~~~~~~~~~~~i~~D-~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFT-GRKENVMHHFSNPNFELIRHD-VVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCc-cchhhhhhhccCCceEEEECC-ccChhhcCCCEEEEeeee
Confidence 568999999999999999999988876 8888886431 111111111112334443322 233567899999999875
Q ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 120 PR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 120 p~--k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
.. ....+-...+..|+.....+.+.+.+.. ..+|+++
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~S 232 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTS 232 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEEC
Confidence 32 2122345677899999999999888765 3565554
No 103
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=97.20 E-value=0.0025 Score=62.05 Aligned_cols=113 Identities=17% Similarity=0.260 Sum_probs=77.9
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC----CCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 45 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 45 ~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~----~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
.|+||+|.+|+.++..|...+...+|+..|+........++.+... ..+++- ..++.+|++|+|+||-+|..-
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d---~~~l~~a~~g~d~V~H~Aa~~ 77 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITD---PESLEEALEGVDVVFHTAAPV 77 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEecccc---HHHHHHHhcCCceEEEeCccc
Confidence 3889999999999999998886779999998762222122332211 123332 357889999999999998743
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424 121 RKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (390)
Q Consensus 121 ~k~g-~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd 162 (390)
--.+ ..+..+..-|+.-.+.+.+++.+..-.. +|+|.-.+
T Consensus 78 ~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkr--lVytSS~~ 118 (280)
T PF01073_consen 78 PPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKR--LVYTSSIS 118 (280)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHcCCCE--EEEEcCcc
Confidence 2233 4566788899999999999988775433 44544443
No 104
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=97.18 E-value=0.0036 Score=60.25 Aligned_cols=113 Identities=19% Similarity=0.124 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeC----CCChhhhhCC--CcEE
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG----QPQLENALTG--MDLV 113 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~d--ADiV 113 (390)
||.|+||+|.+|+.++..|...+...++++.|.... .....++.. ...+..+.+ ..++.+++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLED---NPRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhcc---CCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 589999999999999998877653347888886431 111122221 122333221 1245566776 8999
Q ss_pred EEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 114 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 114 Ii~ag~p~k--~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
|..++.... ....-...+..|+.....+++.+.+...+..++.+|
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S 124 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS 124 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 999875321 112334567789888899999888876555566554
No 105
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.18 E-value=0.0066 Score=64.77 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=73.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcc-----c--CCCeEEEEeCC----CChhh
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM-----D--TGAVVRGFLGQ----PQLEN 105 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~-----~--~~~~v~~~~~t----~dl~~ 105 (390)
+..+.|.|+||+|++|..++..|+..+. +|++++.+. ......++.+. . ...++.++.+. .++.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 3456899999999999999999888876 888888876 22233333211 1 01123333221 24556
Q ss_pred hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
++.++|+||.++|........-...+..|......+.+.+.+..-+ .||+++
T Consensus 156 aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS 207 (576)
T PLN03209 156 ALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT 207 (576)
T ss_pred HhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence 7899999999988754322222233456777777888887766533 455554
No 106
>PRK07680 late competence protein ComER; Validated
Probab=97.15 E-value=0.0036 Score=60.47 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=64.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCC--CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~--~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
|||+|||+ |.+|..++..|...+. ..++.++|.+... ...+.+.. ..++.. .+..+++++||+||++..
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~~--~g~~~~---~~~~~~~~~aDiVilav~- 71 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKERY--PGIHVA---KTIEEVISQSDLIFICVK- 71 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHHc--CCeEEE---CCHHHHHHhCCEEEEecC-
Confidence 58999999 9999999998887763 3579999997521 12232211 123332 355677899999999871
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCc
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN 162 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd 162 (390)
| ..+.++.+.+..+ .++.+|+.++|++.
T Consensus 72 p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 1 1133444555444 36778888898874
No 107
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=97.15 E-value=0.013 Score=57.34 Aligned_cols=117 Identities=17% Similarity=0.125 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcc-cCCCeEEEEeC----CCChhhhhCCCcEE
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTGAVVRGFLG----QPQLENALTGMDLV 113 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~-~~~~~v~~~~~----t~dl~~al~dADiV 113 (390)
++++|.|+||+|+||+.++..|...+. ++++.+.+.. ......+... ....+++.+.+ ..++.+++++.|+|
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 357999999999999999999998876 7777776651 1111112111 11123333322 23456678899999
Q ss_pred EEcCCCCCCC-CC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 114 IIPAGVPRKP-GM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 114 Ii~ag~p~k~-g~-~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
|..+|..... .. .-...+..|+.-...+.+.+.++.....++++|
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S 128 (325)
T PLN02989 82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS 128 (325)
T ss_pred EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 9999853221 11 223556788888888888887754223455443
No 108
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.12 E-value=0.0023 Score=62.93 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=67.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVIi~a 117 (390)
|||.|+||+|.+|+.++..|...+. +++.++.+.... ..+.+. .++.+.+ ..++.++++++|+||.++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~----~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEW----GAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhc----CCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 6999999999999999999988886 888888764211 112211 1222222 234678899999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
+.... ...+....|......+.+++.+.+-+ .+|.+|
T Consensus 73 ~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S 109 (317)
T CHL00194 73 TSRPS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS 109 (317)
T ss_pred CCCCC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence 53221 11223455666777888888777644 344444
No 109
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=97.12 E-value=0.0062 Score=66.25 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=76.9
Q ss_pred hhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC----
Q 016424 29 RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---- 102 (390)
Q Consensus 29 ~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---- 102 (390)
++..|. +.++|||.|+||+|.+|+.++..|... +. +|+.+|.+... . .++.. ...++.+.+. +|
T Consensus 306 ~~~~~~---~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~-~-~~~~~---~~~~~~~~gDl~d~~~~ 375 (660)
T PRK08125 306 SKPACS---AKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDA-I-SRFLG---HPRFHFVEGDISIHSEW 375 (660)
T ss_pred ccchhh---hhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchh-h-hhhcC---CCceEEEeccccCcHHH
Confidence 344443 467889999999999999999988864 55 88989986521 1 11111 1123333221 11
Q ss_pred hhhhhCCCcEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 103 LENALTGMDLVIIPAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 103 l~~al~dADiVIi~ag~p~--k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
+.++++++|+||-.|+... .......++...|+.....+.+++.++. -.++.+|
T Consensus 376 l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~S 431 (660)
T PRK08125 376 IEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPS 431 (660)
T ss_pred HHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEc
Confidence 3457889999999887543 2223445677888888889999988875 2455444
No 110
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.11 E-value=0.0037 Score=60.70 Aligned_cols=64 Identities=23% Similarity=0.256 Sum_probs=45.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|||+|||+ |.+|..++..|...+. +|.+||.++ ....+.+.. .+... +++. +++++||+||++.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~g------~~~~~--~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIERG------LVDEA--STDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCC------Ccccc--cCCH-hHhcCCCEEEEcC
Confidence 58999999 9999999999998876 899999976 222222211 11111 2344 5789999999996
No 111
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.0076 Score=63.62 Aligned_cols=127 Identities=19% Similarity=0.224 Sum_probs=94.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC----CChhhhhCC--
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ----PQLENALTG-- 109 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~d-- 109 (390)
.-+.+.|.|.||+|++|+.+...++..+ ..+|+++|.++ ....-.+|.+.....+++.+-|+ +-++.++++
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCC
Confidence 4456799999999999999998887764 46999999998 34455666653212444444432 345678889
Q ss_pred CcEEEEcCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCcccH
Q 016424 110 MDLVIIPAGVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNSTV 165 (390)
Q Consensus 110 ADiVIi~ag~p~k~g~~--r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t----NPvd~~t 165 (390)
.|+|+=+|....-|-++ -.+-...|+-=-+.++++..++.=+..+++-| ||+|+|-
T Consensus 326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhh
Confidence 99999999877666543 45678899999999999999888666666654 8888773
No 112
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.03 E-value=0.0034 Score=61.69 Aligned_cols=68 Identities=26% Similarity=0.243 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.+||+|||+ |.+|..++..+...+...++.+||.++ ....+.+. . ..... ..++.+++++||+||++.
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~---g--~~~~~---~~~~~~~~~~aDvViiav 74 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL---G--LGDRV---TTSAAEAVKGADLVILCV 74 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC---C--CCcee---cCCHHHHhcCCCEEEECC
Confidence 369999999 999999999998887656899999986 22222221 1 11111 234567899999999997
No 113
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.03 E-value=0.0046 Score=59.26 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
+|||+|||+ |.+|..++..+...+. ..++.++|.+... ...+.+.. .++. +++..+.+.+||+||++..
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence 579999999 9999999998887762 3578999997521 12222211 1222 2355677899999999861
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd 162 (390)
...+.++.+.+..+. +..|+..+|-+.
T Consensus 72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 112445555555444 456777777653
No 114
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.02 E-value=0.015 Score=56.47 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=78.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC----CCCh-------h
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQL-------E 104 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~----t~dl-------~ 104 (390)
..+++.+.|.|||++||..++..|+.++. .|+|+..++ +...+.+|.+.. ...+.+... ++++ .
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence 34567899999999999999999999998 999999988 677888888654 233333321 1111 1
Q ss_pred hhhCCCcEEEEcCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 105 NALTGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 105 ~al~dADiVIi~ag~p~k~g------~~r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
+..-..|+.|..||...-.. .+-.+++.-|+--...+...+... +-.+-||+++
T Consensus 80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~ 142 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIG 142 (265)
T ss_pred hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 11226899999998754221 123466777876666666655443 2245566664
No 115
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.01 E-value=0.0056 Score=60.75 Aligned_cols=112 Identities=16% Similarity=0.137 Sum_probs=72.6
Q ss_pred cHHHHHHHHHhCCCCcEEEEEeCCch--H--------H--HHHH-Hh----cc--c------CCCeEEEEeCCCChhhhh
Q 016424 53 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------G--VTAD-IS----HM--D------TGAVVRGFLGQPQLENAL 107 (390)
Q Consensus 53 vG~~~a~~l~~~~~~~eL~L~Di~~~--~--------g--~a~D-L~----~~--~------~~~~v~~~~~t~dl~~al 107 (390)
+|..++..++..++ +++|||+++. . + ...+ +. +. . ...+++..+ +.|+++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~ 77 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL 77 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence 46788888888888 9999999871 1 1 0111 11 00 0 124676532 23467889
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~ 186 (390)
++||+||.+. .++..+-+++...+.+.+ |++++ .||-..+...-+++. . . .|.|++|+
T Consensus 78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~---~-~-~p~r~~g~ 136 (314)
T PRK08269 78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRH---V-A-HPERFLNA 136 (314)
T ss_pred ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhh---c-C-CcccEEEE
Confidence 9999999997 567778888888899998 56654 788877665433322 2 1 24677776
Q ss_pred cc
Q 016424 187 TM 188 (390)
Q Consensus 187 t~ 188 (390)
..
T Consensus 137 Hf 138 (314)
T PRK08269 137 HW 138 (314)
T ss_pred ec
Confidence 43
No 116
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.00 E-value=0.0043 Score=53.62 Aligned_cols=102 Identities=23% Similarity=0.256 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
..+||+|||+ |.||.+++..|...+. +|.-+-.. ...-+..+.+.. ..... .++.+.+++||++|++.
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~sr-s~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iav-- 76 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSR-SPASAERAAAFI--GAGAI----LDLEEILRDADLVFIAV-- 76 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSC-HH-HHHHHHC----TT---------TTGGGCC-SEEEE-S--
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeC-Cccccccccccc--ccccc----cccccccccCCEEEEEe--
Confidence 4579999999 9999999999999886 55444332 223333444432 12222 23467899999999996
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--C-CCcEEEEe--cCCCcccHHH
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--C-PNATVNLI--SNPVNSTVPI 167 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~--~-p~a~iiv~--tNPvd~~t~i 167 (390)
|+. .+.++++++..+ - |+.+|+=. +-+++++.++
T Consensus 77 ---pDd-----------aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 77 ---PDD-----------AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp ----CC-----------HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred ---chH-----------HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 221 367888888877 3 45444433 3677888764
No 117
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.98 E-value=0.012 Score=58.74 Aligned_cols=116 Identities=15% Similarity=0.043 Sum_probs=74.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHh-ccc--CCCeEEEEeCC----CChhhhhCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS-HMD--TGAVVRGFLGQ----PQLENALTGM 110 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~-~~~--~~~~v~~~~~t----~dl~~al~dA 110 (390)
+++||.|+||+|.+|+.++..|...+. +|+.+|... ......++. ... ...+++.+.+. .++.+.++++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 457999999999999999999988875 899999754 111111111 100 01234444321 1344567899
Q ss_pred cEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 111 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 111 DiVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
|+||-.|+.+..+ .+........|+.-...+.+.+.+.... .++.+|
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~S 140 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAA 140 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEee
Confidence 9999998764322 1334556788999889999988877533 344443
No 118
>PLN02214 cinnamoyl-CoA reductase
Probab=96.98 E-value=0.016 Score=57.66 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--H-HHHHHHhcccCCCeEEEEeC----CCChhhhhCCCc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P-GVTADISHMDTGAVVRGFLG----QPQLENALTGMD 111 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~-g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dAD 111 (390)
.++++|.|+||+|.+|+.++..|...+. +++..+.+.. . .....+... ..++..+.+ ..++.++++++|
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d 83 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCD 83 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCC
Confidence 4567899999999999999999988886 7888877541 1 111222211 122333221 234667889999
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424 112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157 (390)
Q Consensus 112 iVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~ 157 (390)
+||-+++... ....+.+..|+.-...+.+.+.+.... .++++
T Consensus 84 ~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~ 125 (342)
T PLN02214 84 GVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVIT 125 (342)
T ss_pred EEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEe
Confidence 9999998542 234566778888888888888876543 34443
No 119
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.97 E-value=0.0068 Score=60.13 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhC-CCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-----CChhhhhCCCcEEE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVI 114 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-----~dl~~al~dADiVI 114 (390)
||||.|+||+|.+|+.++..|... +. +|+.+|..... ..++.. ...++.+.+. ..+.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVN---HPRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhcc---CCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 579999999999999999988865 44 89999875311 112211 1234433321 12335678999999
Q ss_pred EcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 115 IPAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 115 i~ag~p~--k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
-+++... ....+-......|+.-.+.+.+.+.+.. ..++.+|
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~S 117 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPS 117 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEe
Confidence 8876432 2223334455667777778888877654 4555554
No 120
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.96 E-value=0.0044 Score=61.33 Aligned_cols=121 Identities=23% Similarity=0.277 Sum_probs=74.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHH---HHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~---DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|||+|+|+ |.||+.+++.|.+.+ ..+.++-.++. ...-. .+.+........... +++ .+.+..+|+||++.
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g--~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG--HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC--CeEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence 79999999 999999999999988 36666665542 22111 111111101111111 223 46778999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcee-eccccc
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTMLD 190 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~t~Ld 190 (390)
-..+ ..+..+.+..+. |+.+|+.+=|=++.. |.+++. ++.++|+ |+|+..
T Consensus 76 Ka~q----------------~~~al~~l~~~~~~~t~vl~lqNG~g~~-----e~l~~~--~~~~~il~G~~~~~ 127 (307)
T COG1893 76 KAYQ----------------LEEALPSLAPLLGPNTVVLFLQNGLGHE-----EELRKI--LPKETVLGGVTTHG 127 (307)
T ss_pred cccc----------------HHHHHHHhhhcCCCCcEEEEEeCCCcHH-----HHHHHh--CCcceEEEEEeeee
Confidence 3221 346666777766 677888888888876 333443 4455554 787653
No 121
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.95 E-value=0.0069 Score=58.79 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=71.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVIi~a 117 (390)
|||.|+||+|.+|+.++..|...+. +++.+|.+.... .++.+. .++...+ ..++.++++++|+||..+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~----~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGL----DVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccC----CceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 5899999999999999999988875 899999865211 112111 1222111 124567788999999988
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
+.......+.......|+.....+++.+.+.+-. .+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 112 (328)
T TIGR03466 73 ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS 112 (328)
T ss_pred eecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 6532223345566778888888888888776533 344444
No 122
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.95 E-value=0.0056 Score=63.48 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=47.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|||+||||+|.+|..++..|...+. ++.++|.+... ..+.++ .+.. +++..+++.+||+||++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~~a~~~-------gv~~---~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKEVAKEL-------GVEY---ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHc-------CCee---ccCHHHHhccCCEEEEec
Confidence 6899998659999999999998876 89999987522 222221 1222 346678899999999986
No 123
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.95 E-value=0.0059 Score=58.49 Aligned_cols=94 Identities=14% Similarity=0.250 Sum_probs=60.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCC--CcEEEEE-eCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~--~~eL~L~-Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
|||++||. |.+|+.++..|...+. ..+|+.+ |.+... ...+.+. .++.. ++..+++++||+||++.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~----g~~~~---~~~~e~~~~aDvVil~v- 69 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL----GVKTA---ASNTEVVKSSDVIILAV- 69 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc----CCEEe---CChHHHHhcCCEEEEEE-
Confidence 68999999 9999999999988764 4578888 776522 2223221 12322 34567789999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV 161 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPv 161 (390)
.|. .+.++...+..+ .|+.++|..++.+
T Consensus 70 ~~~---------------~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 70 KPQ---------------VVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred CcH---------------HHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 221 233444445444 3566666555554
No 124
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.94 E-value=0.0055 Score=60.15 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=60.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~ 121 (390)
|||+|||. |.+|++++..|...+. +|.+||.+... +..+.... ........++.++++++|+|+++...
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g----~~~~~s~~~~~~~~~~~dvIi~~vp~-- 69 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDR----TTGVANLRELSQRLSAPRVVWVMVPH-- 69 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcC----CcccCCHHHHHhhcCCCCEEEEEcCc--
Confidence 58999999 9999999999998886 89999998621 22232211 11111112344456789999998511
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 016424 122 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV 161 (390)
Q Consensus 122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPv 161 (390)
- .+.++.+.+..+. ++.+++..||..
T Consensus 70 -------------~-~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 70 -------------G-IVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred -------------h-HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 1 3445555555554 667777777654
No 125
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.89 E-value=0.01 Score=60.17 Aligned_cols=125 Identities=17% Similarity=0.260 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--H----HHH----HHHh----cccCCCeEEEEeCCCChhhh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P----GVT----ADIS----HMDTGAVVRGFLGQPQLENA 106 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~----g~a----~DL~----~~~~~~~v~~~~~t~dl~~a 106 (390)
.++|+|||- |.||.++|..++..+. .+.=+|||.. . |.. -++. ..-...+++. |+|. +.
T Consensus 9 ~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~ 81 (436)
T COG0677 9 SATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EE 81 (436)
T ss_pred ceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hh
Confidence 479999999 9999999999999887 8899999871 1 100 0111 1112356775 4575 55
Q ss_pred hCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHhCCC
Q 016424 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAGTY 178 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~s~~ 178 (390)
++.||++||+.-.|.+... .-.+..+..-++.|.++=..+-++++ |-|.+.+-.++--++...+|+
T Consensus 82 l~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL 149 (436)
T COG0677 82 LKECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL 149 (436)
T ss_pred cccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC
Confidence 8899999999887765421 11233455666667666544433333 677776655443333333444
No 126
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.88 E-value=0.0066 Score=60.94 Aligned_cols=98 Identities=22% Similarity=0.271 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
-..++|.|+||+|.+|+.++..|....-+.+|++++.+. +...+.++.+ .++ .++.+++.++|+||..
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~----~~i------~~l~~~l~~aDiVv~~ 222 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG----GKI------LSLEEALPEADIVVWV 222 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc----ccH------HhHHHHHccCCEEEEC
Confidence 345799999999999999999887543356899999875 3333333321 111 2567899999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 016424 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 164 (390)
Q Consensus 117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~ 164 (390)
++.|...-.+..++ .+..+++=++.|=|+-
T Consensus 223 ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 223 ASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred CcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence 98875321222111 3667888889997775
No 127
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.87 E-value=0.0069 Score=61.53 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
..+||+|||+.|.+|..++..|...+. ++.+||.+.. ++..+++++||+||++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence 457999999559999999999999886 8999998520 13457789999999986
No 128
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=96.85 E-value=0.017 Score=56.68 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC--CCcEE
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDLV 113 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~--dADiV 113 (390)
|||.|+||+|.+|+.++..|...+. +++++|... .......+.+.. ..++..+.+ -+| +.++++ ++|+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV 77 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence 6899999999999999998888775 888888643 111111222211 112222211 122 334454 58999
Q ss_pred EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 114 Ii~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
|..++..... .....+.+..|+.....+++.+.+..-. .++.+|
T Consensus 78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 123 (338)
T PRK10675 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS 123 (338)
T ss_pred EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 9998764321 1234567788999999999888876433 344443
No 129
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.83 E-value=0.014 Score=54.98 Aligned_cols=70 Identities=10% Similarity=0.190 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
+++||+|||+ |.+|..++..+...+ ...+++.++.... ....++.+.. .++. ++|+.+.++++|+||++.
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence 3579999999 999999998887765 2455878876431 1122333211 1232 246678899999999985
No 130
>PRK06194 hypothetical protein; Provisional
Probab=96.82 E-value=0.039 Score=52.86 Aligned_cols=114 Identities=21% Similarity=0.179 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhhC------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT------ 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al~------ 108 (390)
+++|.|+||+|++|+.++..|...+. +|+++|.+. ......++... ..++..+.+. +| +.++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998886 899999875 33344444332 2344433321 22 223333
Q ss_pred -CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHH----HHHHHHHhCCC-----cEEEEec
Q 016424 109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRT----LCEGIAKCCPN-----ATVNLIS 158 (390)
Q Consensus 109 -dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~----ia~~I~~~~p~-----a~iiv~t 158 (390)
..|+||..+|..... ..+.. ..+..|+.-... +.+.+.+.+.+ +.+++++
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~s 147 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTA 147 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeC
Confidence 369999999874321 12222 234555544444 44445554432 5566554
No 131
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.82 E-value=0.0093 Score=59.63 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-+.++|+|||. |.+|+.++..+...+. +|+.||.+.... .+ .++. +.++.+++++||+|++...
T Consensus 144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~--------~~~~---~~~l~ell~~aDiVil~lP 207 (330)
T PRK12480 144 VKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LD--------FLTY---KDSVKEAIKDADIISLHVP 207 (330)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hh--------hhhc---cCCHHHHHhcCCEEEEeCC
Confidence 35579999999 9999999999887776 899999875210 00 0111 2468899999999999862
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP 160 (390)
.. ..+..++. ...+....|++++|+++-=
T Consensus 208 ~t-----------~~t~~li~--~~~l~~mk~gavlIN~aRG 236 (330)
T PRK12480 208 AN-----------KESYHLFD--KAMFDHVKKGAILVNAARG 236 (330)
T ss_pred Cc-----------HHHHHHHh--HHHHhcCCCCcEEEEcCCc
Confidence 21 11222221 2333344578999988743
No 132
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.80 E-value=0.0051 Score=57.11 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=51.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLG 99 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~ 99 (390)
..||.|+|+ |++|+.++..|+..+ +.+|.|+|.+. +...+..|.......+++.+..
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 459999999 999999999999888 46899999883 1112233444333344444321
Q ss_pred C---CChhhhhCCCcEEEEcC
Q 016424 100 Q---PQLENALTGMDLVIIPA 117 (390)
Q Consensus 100 t---~dl~~al~dADiVIi~a 117 (390)
. .++.+.++++|+||.+.
T Consensus 99 ~i~~~~~~~~~~~~D~Vi~~~ 119 (202)
T TIGR02356 99 RVTAENLELLINNVDLVLDCT 119 (202)
T ss_pred cCCHHHHHHHHhCCCEEEECC
Confidence 1 23445689999998885
No 133
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.77 E-value=0.016 Score=56.28 Aligned_cols=100 Identities=18% Similarity=0.141 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCC--CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~--~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
|+||+|||+ |.+|..++..|...+. ..+|++||.+... ....+.... ..++. +++..++++++|+||++..
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~--~~~~~---~~~~~e~~~~aDvVilavp 73 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY--PTVEL---ADNEAEIFTKCDHSFICVP 73 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc--CCeEE---eCCHHHHHhhCCEEEEecC
Confidence 479999999 9999999999887762 2589999986521 122222211 12332 2355678899999999862
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcc
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS 163 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~ 163 (390)
| ..+.++.+.+..+- ++..++.+.|-+++
T Consensus 74 -p---------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 74 -P---------------LAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred -H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 1 12445566665543 45667777776554
No 134
>PRK07102 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.026 Score=52.65 Aligned_cols=115 Identities=19% Similarity=0.053 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh----CCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL----TGM 110 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al----~dA 110 (390)
|++|.|+||+|++|..++..|+..+. ++++.|.++ ......++.... ..++..+... +| +++.+ +..
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 46899999999999999999998876 899999886 233334443321 2244433221 22 22222 235
Q ss_pred cEEEEcCCCCCC---CCCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 111 DLVIIPAGVPRK---PGMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 111 DiVIi~ag~p~k---~g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
|+||..+|.... .+.+.. +.+..|..-...+.+.+..+ ...+.++++|
T Consensus 78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 134 (243)
T PRK07102 78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGIS 134 (243)
T ss_pred CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999998875321 123333 34556666555555555443 2345666665
No 135
>PLN02583 cinnamoyl-CoA reductase
Probab=96.75 E-value=0.041 Score=53.59 Aligned_cols=114 Identities=15% Similarity=0.091 Sum_probs=70.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-h---HHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVTADISHMDTGAVVRGFLG----QPQLENALTGMDL 112 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~---~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADi 112 (390)
.++|.|+||+|++|+.++..|...+. ++++.+.+. . .....++... ..+++.+.+ ..++.++++++|.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~ 81 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSG 81 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCE
Confidence 45899999999999999999998886 788877643 1 1112222211 123333321 2345678999999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
|+-.++.+........+++..|+.-...+.+.+.+..--..+|++|
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S 127 (297)
T PLN02583 82 LFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS 127 (297)
T ss_pred EEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence 9866554332111234567888888888888887753113444443
No 136
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.73 E-value=0.016 Score=56.86 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=49.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
+||++||- |.+|++++..|...++ +++.||.+..+. +..+.... .... .+..++.++||+||++.
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~G--a~~a-----~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAG--ATVA-----ASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcC--Cccc-----CCHHHHHHhCCEEEEec
Confidence 58999999 9999999999999998 999999986432 33333322 1111 23468999999999985
No 137
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=96.72 E-value=0.021 Score=56.79 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC----CCChhhhhCC--Cc
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG----QPQLENALTG--MD 111 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~d--AD 111 (390)
++++|.|+||+|++|+.++..|...+. +|+.+|.+.. ......+. .. .++....+ ..++.+.+++ .|
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~Dl~~~~~~~~~~~~~~~d 77 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLN-LA--KKIEDHFGDIRDAAKLRKAIAEFKPE 77 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHh-hc--CCceEEEccCCCHHHHHHHHhhcCCC
Confidence 357999999999999999999998875 8888887662 11111121 11 12221111 1233455554 59
Q ss_pred EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424 112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 112 iVIi~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
+||-+++.+... ...-...+..|+.....+.+.+.+.+....++++|.
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 78 IVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred EEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 999998854321 123345677888888888888876653345666553
No 138
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=96.72 E-value=0.045 Score=53.56 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcc-cCCCeEEEEeC----CCChhhhhCCCcEEE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFLG----QPQLENALTGMDLVI 114 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~-~~~~~v~~~~~----t~dl~~al~dADiVI 114 (390)
.++|.|+||+|.+|+.++..|...+. ++++...+. .......+... ....+++.+.+ ..++.++++++|+||
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 46999999999999999999988876 676554443 11122222211 11123443322 234567788999999
Q ss_pred EcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 016424 115 IPAGVPRK-PGMTRDDLFNINAGIVRTLCEGIAKC 148 (390)
Q Consensus 115 i~ag~p~k-~g~~r~~l~~~N~~ii~~ia~~I~~~ 148 (390)
-+|+.... ......+++..|+.....+.+.+.+.
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 99875321 11122345667888788888777664
No 139
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.71 E-value=0.0057 Score=51.88 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=49.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHH-HHHHh-cccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADIS-HMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~-a~DL~-~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
||+|+||+|.+|+.+..+|...+.+.-+.+++.....|. ..+.. +......+.... .+ .+.+.++|+||.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--AD-PEELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TS-GHHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cc-hhHhhcCCEEEecC
Confidence 799999999999999999999888888888888762221 12221 111123444432 24 46789999999985
No 140
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.69 E-value=0.013 Score=56.79 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
.|||+|||+ |.+|.+++..|...+ ...+|..+|.+.. ....++.... .++.. ++..+++++||+||++..
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~~---~~~~e~~~~aDvVilav~ 74 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKGT---HNKKELLTDANILFLAMK 74 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceEe---CCHHHHHhcCCEEEEEeC
Confidence 369999999 999999999888876 2358899997541 1223333211 13332 355677899999999862
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCc
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN 162 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd 162 (390)
|.. +.++...+..+ .++.++|.+.+-+.
T Consensus 75 ----p~~------------~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 75 ----PKD------------VAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred ----HHH------------HHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 211 22333444443 35667766655553
No 141
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.69 E-value=0.012 Score=57.20 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=60.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCC--CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~--~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
+||++||+ |.+|++++..|...+. ..+|+.+|.+... ...+.+.. . ++.. ++..+.+++||+||++..
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~-g--~~~~---~~~~e~~~~aDiIiLavk- 72 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY-G--ITIT---TNNNEVANSADILILSIK- 72 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc-C--cEEe---CCcHHHHhhCCEEEEEeC-
Confidence 58999999 9999999999988774 4579999987521 22232211 1 2332 344677899999999873
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCc
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN 162 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd 162 (390)
| . .+.++.+.+..+ .++.++|-+.--++
T Consensus 73 P---~------------~~~~vl~~l~~~~~~~~lvISi~AGi~ 101 (272)
T PRK12491 73 P---D------------LYSSVINQIKDQIKNDVIVVTIAAGKS 101 (272)
T ss_pred h---H------------HHHHHHHHHHHhhcCCcEEEEeCCCCc
Confidence 2 1 233444445443 35566665554443
No 142
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.68 E-value=0.0099 Score=57.92 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=46.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
+||+|||. |.+|+.++..+...+. ++..||.+... ...+... .+.. ++++.+++++||+||++.
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~--~~~~~~~----g~~~---~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEA--VAEVIAA----GAET---ASTAKAVAEQCDVIITML 66 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHC----CCee---cCCHHHHHhcCCEEEEeC
Confidence 68999999 9999999999988776 88999987622 1112211 1122 245678889999999986
No 143
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.65 E-value=0.0041 Score=53.67 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=50.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLG 99 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~ 99 (390)
..||+|+|+ |++|+.++..|+..+. .+|.|+|-+. +......|.......+++.+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE 79 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence 469999999 9999999999998874 7899999874 0111222333333456665532
Q ss_pred C---CChhhhhCCCcEEEEcC
Q 016424 100 Q---PQLENALTGMDLVIIPA 117 (390)
Q Consensus 100 t---~dl~~al~dADiVIi~a 117 (390)
. .+..+.++++|+||.+.
T Consensus 80 ~~~~~~~~~~~~~~d~vi~~~ 100 (135)
T PF00899_consen 80 KIDEENIEELLKDYDIVIDCV 100 (135)
T ss_dssp HCSHHHHHHHHHTSSEEEEES
T ss_pred ccccccccccccCCCEEEEec
Confidence 1 23446677999999875
No 144
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.64 E-value=0.021 Score=51.79 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=48.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH---------------HHHHHHhcccCCCeEEEEeC---
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP---------------GVTADISHMDTGAVVRGFLG--- 99 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~---------------g~a~DL~~~~~~~~v~~~~~--- 99 (390)
||.|||+ |++|+.++..|+..+. .+++|+|.+. +. ..+..|+......+++.+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID 78 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence 6899999 9999999999998874 6899999985 10 01112222222234443321
Q ss_pred CCChhhhhCCCcEEEEcC
Q 016424 100 QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 100 t~dl~~al~dADiVIi~a 117 (390)
.++..+-++++|+||.+.
T Consensus 79 ~~~~~~~l~~~DlVi~~~ 96 (174)
T cd01487 79 ENNLEGLFGDCDIVVEAF 96 (174)
T ss_pred hhhHHHHhcCCCEEEECC
Confidence 123445689999999985
No 145
>PRK08267 short chain dehydrogenase; Provisional
Probab=96.63 E-value=0.019 Score=54.10 Aligned_cols=113 Identities=23% Similarity=0.271 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC----CCChhhhhC------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG----QPQLENALT------ 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~------ 108 (390)
|+++.|+||+|++|..++..|...+. +++++|.+.. .....++.. ..+..+.+ ..++.++++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~ 74 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAAT 74 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999988875 8999998752 222222221 12222111 112223333
Q ss_pred --CCcEEEEcCCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 016424 109 --GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISN 159 (390)
Q Consensus 109 --dADiVIi~ag~p~k~g---~~---r~~l~~~N~~ii~~ia~~I~~---~~p~a~iiv~tN 159 (390)
..|+||..+|...... .+ -...+..|..-...+.+.+.+ ..+.+.+++++-
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 136 (260)
T PRK08267 75 GGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSS 136 (260)
T ss_pred CCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 4599999998754322 12 123456676655555555433 234566666654
No 146
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=96.63 E-value=0.041 Score=54.72 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=68.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHhcccCCCeEEEEeCC----CChhhhhCCCcE
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ----PQLENALTGMDL 112 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~~~~~~~~v~~~~~t----~dl~~al~dADi 112 (390)
...|||.|+||+|.||+.++..|...+. ++++.+.+... ....++.. ..+++.+.+. .++.+++++.|+
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDG 82 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCE
Confidence 3467999999999999999999988876 78887765421 11222221 1234433321 234566788999
Q ss_pred EEEcCCCCCCC---C-CCHH-----HHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 113 VIIPAGVPRKP---G-MTRD-----DLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 113 VIi~ag~p~k~---g-~~r~-----~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
||-+++.+... . .+.. ..+..|+.-...+.+.+.++..-..++++|
T Consensus 83 Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~S 137 (353)
T PLN02896 83 VFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTS 137 (353)
T ss_pred EEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEe
Confidence 99998864311 1 1111 223334466667777766653223455544
No 147
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.63 E-value=0.015 Score=50.52 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=72.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHH-H--hcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD-I--SHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~D-L--~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
|+|+|+ |.+|..++..|.+.+. ++.|++... ......+ + .+......+.......+..+....+|+||++...
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 789999 9999999999988776 899999865 1111111 1 1111001111111112222568899999999632
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceee-cccc
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTML 189 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG-~t~L 189 (390)
.. ..+..+.+..+. |+..|+.+-|=++..-. +.+. +++.+|++ +|+.
T Consensus 78 ~~----------------~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~-----l~~~--~~~~~v~~g~~~~ 126 (151)
T PF02558_consen 78 YQ----------------LEQALQSLKPYLDPNTTIVSLQNGMGNEEV-----LAEY--FPRPRVLGGVTTI 126 (151)
T ss_dssp GG----------------HHHHHHHHCTGEETTEEEEEESSSSSHHHH-----HHCH--STGSGEEEEEEEE
T ss_pred cc----------------hHHHHHHHhhccCCCcEEEEEeCCCCcHHH-----HHHH--cCCCcEEEEEEeE
Confidence 21 345666677776 67788888898877633 2333 55667774 4553
No 148
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.61 E-value=0.0083 Score=58.41 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=46.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
||+|||. |.+|++++..|...+. +|.+||.+... ...+.+.. . .. .++..+++++||+||++.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g--~--~~---~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAG--A--VT---AETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCC--C--cc---cCCHHHHHhcCCEEEEec
Confidence 6999999 9999999999998886 89999987621 22232221 1 11 235678899999999986
No 149
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.61 E-value=0.012 Score=59.27 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=46.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH-HHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~-g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
+||+|||+ |.+|.+++..|...+. ++.+||.+... ....... .. .+.. .++++.+++++||+||++.
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~-~~---~~~~--~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALG-FG---VIDE--LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhc-CC---CCcc--cccCHHHHhcCCCEEEEeC
Confidence 37999999 9999999999998886 77788887622 1111111 11 1111 1346778899999999986
No 150
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.61 E-value=0.011 Score=57.19 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=44.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|||+|||. |.+|..++..|...+...+|+.||.+... ...+..... +.. .+++.+ +.+||+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~-~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEE-LKKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence 58999999 99999999999988765579999997621 111221111 111 124444 45699999986
No 151
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=96.60 E-value=0.014 Score=55.65 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=66.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCC
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP 123 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~k~ 123 (390)
|.|+||+|.+|+.++..|...+. +|+.++.+..... .+... .+....+ .+..++++++|+||..++.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGA--NTKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCC--cccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 57999999999999999988875 8999998762100 00000 0111111 23357889999999999876543
Q ss_pred CC----CHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016424 124 GM----TRDDLFNINAGIVRTLCEGIAKCCPN 151 (390)
Q Consensus 124 g~----~r~~l~~~N~~ii~~ia~~I~~~~p~ 151 (390)
+. ....+...|+.....+.+.+.++...
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 31 22355677899999999999887643
No 152
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.59 E-value=0.011 Score=57.88 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|+||+|||. |.+|.+++..|...+. +|..||++... +.++.... ++. .++..+++++||+||++.
T Consensus 1 m~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 1 MAAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML 65 (296)
T ss_pred CCeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence 359999999 9999999999998886 89999997621 22232211 111 235678899999999985
No 153
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.57 E-value=0.0098 Score=60.02 Aligned_cols=112 Identities=16% Similarity=0.032 Sum_probs=70.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEE
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLV 113 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiV 113 (390)
..+.|||.|+||+|.||+.++..|...+. +|..+|.... ....+ ... ....+.+ ..++.++++++|+|
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~-~~~~~---~~~--~~~~~~~Dl~d~~~~~~~~~~~D~V 89 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKN-EHMSE---DMF--CHEFHLVDLRVMENCLKVTKGVDHV 89 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEeccc-ccccc---ccc--cceEEECCCCCHHHHHHHHhCCCEE
Confidence 45668999999999999999999988876 8999987531 10000 000 0111111 11234567899999
Q ss_pred EEcCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 114 IIPAGVPRKPG---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 114 Ii~ag~p~k~g---~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
|-+++.....+ .........|+.....+.+.+.+...+. ++.+|
T Consensus 90 ih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~-~V~~S 136 (370)
T PLN02695 90 FNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR-FFYAS 136 (370)
T ss_pred EEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCE-EEEeC
Confidence 99986431111 1223345678888889999888776554 44443
No 154
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.57 E-value=0.0091 Score=52.08 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
.+.++|.|+|+ |++|..++..+...+ ..++.++|.+. ....+.++.... .... ..+..+.++++|+||++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIA----YLDLEELLAEADLIINT 88 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--ccee----ecchhhccccCCEEEeC
Confidence 34579999999 999999999998876 56899999976 233333333210 1111 12455668999999998
Q ss_pred CCCCC
Q 016424 117 AGVPR 121 (390)
Q Consensus 117 ag~p~ 121 (390)
...+.
T Consensus 89 ~~~~~ 93 (155)
T cd01065 89 TPVGM 93 (155)
T ss_pred cCCCC
Confidence 75543
No 155
>PLN02778 3,5-epimerase/4-reductase
Probab=96.57 E-value=0.045 Score=53.56 Aligned_cols=91 Identities=25% Similarity=0.245 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC--chHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 115 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~--~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi 115 (390)
+...|||.|+||+|.+|+.++..|...+. ++++...+ +...+..|+. + .+.|+||-
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~~~~v~~~l~------------------~--~~~D~ViH 63 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLENRASLEADID------------------A--VKPTHVFN 63 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCCHHHHHHHHH------------------h--cCCCEEEE
Confidence 45568999999999999999999988775 66543221 1111111111 1 26899999
Q ss_pred cCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 016424 116 PAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCP 150 (390)
Q Consensus 116 ~ag~p~k~g-----~~r~~l~~~N~~ii~~ia~~I~~~~p 150 (390)
+|+....+. ....+.+..|+.....+++.+.+.+.
T Consensus 64 ~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv 103 (298)
T PLN02778 64 AAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGL 103 (298)
T ss_pred CCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 887543222 23456778899988899999888754
No 156
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.56 E-value=0.034 Score=54.32 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=80.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhC----CC-----CcEEEEEeCCc--hH------HHHHHHhcccCCCeEEEEeCCCCh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKIN----PL-----VSVLHLYDVVN--TP------GVTADISHMDTGAVVRGFLGQPQL 103 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~----~~-----~~eL~L~Di~~--~~------g~a~DL~~~~~~~~v~~~~~t~dl 103 (390)
..||+|.|| |..|..++.+|... ++ -..++++|.+. .. ..-..+.+.. .. . ...++
T Consensus 25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~--~~-~---~~~~L 97 (279)
T cd05312 25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD--EE-K---EGKSL 97 (279)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc--Cc-c---cCCCH
Confidence 469999999 99999999766543 43 26899999986 11 1112222211 11 1 13579
Q ss_pred hhhhC--CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCC
Q 016424 104 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYD 179 (390)
Q Consensus 104 ~~al~--dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~i~ae~~~~~s~~p 179 (390)
.++++ ++|++|=+.+.| |- +=+++.+.|.++|++.+|+-.+||.. -+++ .++ ++.+ +
T Consensus 98 ~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~p--e~a-~~~t--~ 158 (279)
T cd05312 98 LEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTSKAECTA--EDA-YKWT--D 158 (279)
T ss_pred HHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCccccCH--HHH-HHhh--c
Confidence 99999 999999876544 21 22478888999999999999999986 4444 222 3322 1
Q ss_pred CCceeecc
Q 016424 180 PKKLLGVT 187 (390)
Q Consensus 180 ~~kviG~t 187 (390)
-+.+|++.
T Consensus 159 G~ai~ATG 166 (279)
T cd05312 159 GRALFASG 166 (279)
T ss_pred CCEEEEeC
Confidence 24588873
No 157
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.55 E-value=0.0087 Score=56.08 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=49.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--------------------hHHHHHHHhcccCCCeEEEEeC--
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------------TPGVTADISHMDTGAVVRGFLG-- 99 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--------------------~~g~a~DL~~~~~~~~v~~~~~-- 99 (390)
.||.|||+ |++|+.++..|+..+. .+|.|+|.|. +...+..|.......+++.+..
T Consensus 29 ~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 29 AKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred CCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 48999999 9999999999998874 6899999983 1111223333332344444321
Q ss_pred -CCChhhhhCCCcEEEEcC
Q 016424 100 -QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 100 -t~dl~~al~dADiVIi~a 117 (390)
..+..+-++++|+||.+.
T Consensus 107 ~~~~~~~~~~~~DvVI~a~ 125 (212)
T PRK08644 107 DEDNIEELFKDCDIVVEAF 125 (212)
T ss_pred CHHHHHHHHcCCCEEEECC
Confidence 123345688999999874
No 158
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.55 E-value=0.016 Score=60.66 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc--cCCCeEEEEeCCCChhhhhC---CCcEEEE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTGAVVRGFLGQPQLENALT---GMDLVII 115 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~--~~~~~v~~~~~t~dl~~al~---dADiVIi 115 (390)
+.+|+|||. |.+|++++..|+.++. +|.+||++.. .+.++... .....++. +++++++++ ++|+|++
T Consensus 1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~--~~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYE--KTEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEE
Confidence 358999999 9999999999999987 8999999762 12222221 00122333 346767665 5898888
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 016424 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV 161 (390)
Q Consensus 116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPv 161 (390)
..- + ...+.++.+.+..+ .|+.+||..+|=.
T Consensus 73 ~v~----~-----------~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 73 LIK----A-----------GEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred EeC----C-----------hHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 741 1 22344444555444 4778888887643
No 159
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.54 E-value=0.018 Score=56.93 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
-..++|+|||+ |.+|..++..+...+ ..++.++|.+. +...+..+. ..+.. .+++.+++.++|+||.+
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISA 245 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEEC
Confidence 35689999999 999999998887744 45899999975 223333332 12221 13567889999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-h-CCCcEEEEecCCCccc
Q 016424 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVNST 164 (390)
Q Consensus 117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~-~-~p~a~iiv~tNPvd~~ 164 (390)
.+.|.- .++...+.+ . ....+++-+++|-|+=
T Consensus 246 t~~~~~----------------~~~~~~~~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 246 TGAPHY----------------AKIVERAMKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred CCCCch----------------HHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence 876641 122222211 1 2456788899999865
No 160
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.53 E-value=0.053 Score=52.75 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=58.0
Q ss_pred cCCCccchhhhhhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEE
Q 016424 18 LYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVR 95 (390)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~ 95 (390)
+-|| .|..+++.+........+.++|.|+||+|++|..++..|+..+. +|++.|.+. +.....++.... .++.
T Consensus 18 ~~~~-~~~~~~~~~~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~--~~~~ 92 (293)
T PRK05866 18 MRPP-ISPQLLINRPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG--GDAM 92 (293)
T ss_pred cCCC-CCchhhcCCCCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEE
Confidence 3444 34444442222222233447899999999999999999988876 899999976 233333443211 2233
Q ss_pred EEeCC-CC---hhhhh-------CCCcEEEEcCCCC
Q 016424 96 GFLGQ-PQ---LENAL-------TGMDLVIIPAGVP 120 (390)
Q Consensus 96 ~~~~t-~d---l~~al-------~dADiVIi~ag~p 120 (390)
.+.+. +| ..+++ ...|+||..+|..
T Consensus 93 ~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 93 AVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred EEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 22211 12 22223 3789999998864
No 161
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.52 E-value=0.079 Score=49.24 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------ 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------ 107 (390)
+.++|.|+||+|++|..++..|...+. ++++++.+. ......++.+ ..++..+.+. .| +..++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999988876 799999986 2223334443 1233333221 12 22222
Q ss_pred -CCCcEEEEcCCCC
Q 016424 108 -TGMDLVIIPAGVP 120 (390)
Q Consensus 108 -~dADiVIi~ag~p 120 (390)
...|+||..+|..
T Consensus 79 ~~~~d~vi~~ag~~ 92 (251)
T PRK07231 79 FGSVDILVNNAGTT 92 (251)
T ss_pred hCCCCEEEECCCCC
Confidence 3569999999864
No 162
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.49 E-value=0.01 Score=59.51 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h----------------H--HHHHHHhcccCCCeEEEE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------P--GVTADISHMDTGAVVRGF 97 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~----------------~--g~a~DL~~~~~~~~v~~~ 97 (390)
..||.|||+ |++|+.++..|+..+ +.+|.|+|.|. + + ..+..|.+......++.+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 359999999 999999999999888 46899999974 0 1 112234444333455544
Q ss_pred eCC---CChhhhhCCCcEEEEcC
Q 016424 98 LGQ---PQLENALTGMDLVIIPA 117 (390)
Q Consensus 98 ~~t---~dl~~al~dADiVIi~a 117 (390)
... .++++.++++|+||.+.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEcC
Confidence 321 34567789999999986
No 163
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=96.47 E-value=0.036 Score=54.92 Aligned_cols=107 Identities=18% Similarity=0.077 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCC--CcEEE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTG--MDLVI 114 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~d--ADiVI 114 (390)
|+||.|+||+|.||+.++..|...+. ..+++.|.....+....+.+......+....+ .+++.+++++ .|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 46999999999999999999988763 34667776432111122221110112222211 1234556664 89999
Q ss_pred EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHh
Q 016424 115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC 148 (390)
Q Consensus 115 i~ag~p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~ 148 (390)
-++|..... ..........|+.-...+.+.+.++
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~ 115 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY 115 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHh
Confidence 999864321 1223456778888888888888765
No 164
>PLN02240 UDP-glucose 4-epimerase
Probab=96.47 E-value=0.058 Score=53.24 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeC----CCChhhhhC--C
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLG----QPQLENALT--G 109 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~----t~dl~~al~--d 109 (390)
.++||.|+||+|++|+.++..|...+. +|+++|... .......+.+.. ....++.+.+ ..++.++++ +
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 356999999999999999999988875 889998643 111111222110 0122333221 123333444 6
Q ss_pred CcEEEEcCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 110 MDLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 110 ADiVIi~ag~p~k-~g-~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
+|+||.+++.+.. .. ......+..|+.....+++.+.+..... ++.+|
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 131 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS 131 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 8999999886421 11 2345577889888888888887665333 44444
No 165
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.44 E-value=0.017 Score=57.71 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
..++|+|||+ |+.|...+..+.....+.++.+||.+. +...+.++.+.. ...+.. .+|+++++++||+||.+.
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEee
Confidence 3469999999 999998887777544478999999986 345555554322 233443 357889999999998875
Q ss_pred C
Q 016424 118 G 118 (390)
Q Consensus 118 g 118 (390)
.
T Consensus 206 ~ 206 (330)
T PRK08291 206 P 206 (330)
T ss_pred C
Confidence 3
No 166
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.44 E-value=0.013 Score=57.85 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=52.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHH-----------HHhcccCCCeEEEEeCCCChhhhh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTA-----------DISHMDTGAVVRGFLGQPQLENAL 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~-----------DL~~~~~~~~v~~~~~t~dl~~al 107 (390)
++||+-||| |.||.+..--++.+-+--++.++|++... +.-- |......+.++ +| ++|.+.++
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknl-ff--stdiekai 76 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNL-FF--STDIEKAI 76 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCce-ee--ecchHHHh
Confidence 479999999 99998877666655444589999998621 1111 11111112223 33 46899999
Q ss_pred CCCcEEEEcCCCCCC
Q 016424 108 TGMDLVIIPAGVPRK 122 (390)
Q Consensus 108 ~dADiVIi~ag~p~k 122 (390)
+.||+|+++...|.|
T Consensus 77 ~eadlvfisvntptk 91 (481)
T KOG2666|consen 77 KEADLVFISVNTPTK 91 (481)
T ss_pred hhcceEEEEecCCcc
Confidence 999999999888765
No 167
>PRK08223 hypothetical protein; Validated
Probab=96.44 E-value=0.013 Score=57.34 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=49.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH----------------HHHHHHhcccCCCeEEEEeC-
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP----------------GVTADISHMDTGAVVRGFLG- 99 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~----------------g~a~DL~~~~~~~~v~~~~~- 99 (390)
.||.|||+ |++|+.++..|+..+. .+|.|+|-|. +. ..+..+.++....+|+.+..
T Consensus 28 s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 28 SRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred CCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 49999999 9999999999999884 6899999884 00 01122333333345554431
Q ss_pred --CCChhhhhCCCcEEEEc
Q 016424 100 --QPQLENALTGMDLVIIP 116 (390)
Q Consensus 100 --t~dl~~al~dADiVIi~ 116 (390)
.++..+-++++|+||-+
T Consensus 106 l~~~n~~~ll~~~DlVvD~ 124 (287)
T PRK08223 106 IGKENADAFLDGVDVYVDG 124 (287)
T ss_pred cCccCHHHHHhCCCEEEEC
Confidence 24555678999999854
No 168
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.37 E-value=0.097 Score=48.38 Aligned_cols=115 Identities=18% Similarity=0.196 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------- 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------- 107 (390)
.++|.|+||+|++|+.++..|+..+. +++++|.+. +.....++... ..+..+.+. +| +.+++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999998888775 799999876 22333444432 223333221 22 22223
Q ss_pred CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 016424 108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNP 160 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~tNP 160 (390)
.+.|+||..+|..... ..+.. +.+..|+.-...+.+.+.+. ...+.+++++..
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 3789999998764321 12222 33455655444444444332 234556666643
No 169
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=96.37 E-value=0.035 Score=54.94 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=64.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhC--CCcEEEE
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALT--GMDLVII 115 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~--dADiVIi 115 (390)
|||.|+||+|.+|+.++..|...+. ..++.+|.....+....+.+......+..+.+ ..++.++++ ++|+||-
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 6899999999999999999887763 24566775431111111221111122222211 123445565 4799999
Q ss_pred cCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 016424 116 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKC 148 (390)
Q Consensus 116 ~ag~p~k--~g~~r~~l~~~N~~ii~~ia~~I~~~ 148 (390)
+++.... ......+....|+.-...+.+.+.++
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 9986432 11223457788888888888888775
No 170
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.36 E-value=0.033 Score=55.25 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
.+.++|+|||. |.||+.++..+...+. ++..||...... ..+..+....++.+.+++||+|++...
T Consensus 134 l~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~-----------~~~~~~~~~~~l~e~l~~aDvvv~~lP 199 (312)
T PRK15469 134 REDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW-----------PGVQSFAGREELSAFLSQTRVLINLLP 199 (312)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC-----------CCceeecccccHHHHHhcCCEEEECCC
Confidence 34579999999 9999999999987776 899999754110 001111112468899999999999852
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
.. ..|..++- .+.+....|++++||++
T Consensus 200 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 200 NT-----------PETVGIIN--QQLLEQLPDGAYLLNLA 226 (312)
T ss_pred CC-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence 11 22333332 34555567899999986
No 171
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.35 E-value=0.013 Score=55.42 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=49.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h----------------HHHHHHHhcccCCCeEEEEeC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------PGVTADISHMDTGAVVRGFLG 99 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~----------------~g~a~DL~~~~~~~~v~~~~~ 99 (390)
..||.|+|+ |++|+.++..|+..+ +.+|.|+|-+. + ...+..|.......+++.+..
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 349999999 999999999999888 47899998874 0 111122223222234444321
Q ss_pred ---CCChhhhhCCCcEEEEcCC
Q 016424 100 ---QPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 100 ---t~dl~~al~dADiVIi~ag 118 (390)
..++.+-++++|+||.+..
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~~d 120 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDCTD 120 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEcCC
Confidence 1233456788999998863
No 172
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.34 E-value=0.032 Score=52.83 Aligned_cols=101 Identities=23% Similarity=0.326 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCch--HH-------HHHHHhcccCCCeEEEEeCCCChhhhhC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNT--PG-------VTADISHMDTGAVVRGFLGQPQLENALT 108 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~--~g-------~a~DL~~~~~~~~v~~~~~t~dl~~al~ 108 (390)
-+..||.|+|| |+.|..++..|...+. -++|.++|.+.. .. ...++.+....... ..++.++++
T Consensus 23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~-----~~~l~~~l~ 96 (226)
T cd05311 23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKT-----GGTLKEALK 96 (226)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcc-----cCCHHHHHh
Confidence 34569999999 9999999999987764 128999999841 11 11223221100111 135778999
Q ss_pred CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcc
Q 016424 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 163 (390)
Q Consensus 109 dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~ 163 (390)
++|+||-+.+ +|+-. .++.+. .+++.+++.++||...
T Consensus 97 ~~dvlIgaT~----~G~~~-----------~~~l~~---m~~~~ivf~lsnP~~e 133 (226)
T cd05311 97 GADVFIGVSR----PGVVK-----------KEMIKK---MAKDPIVFALANPVPE 133 (226)
T ss_pred cCCEEEeCCC----CCCCC-----------HHHHHh---hCCCCEEEEeCCCCCc
Confidence 9999999875 45411 122233 3477888888899853
No 173
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.33 E-value=0.05 Score=53.85 Aligned_cols=116 Identities=15% Similarity=0.207 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC--CCC-------hhhhhC-
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG--QPQ-------LENALT- 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~--t~d-------l~~al~- 108 (390)
...+.|+||+|++|..++..|+..+. +|+++|+++ +...+.++.......++..+.. ++| +.+.+.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 45889999999999999999998886 899999987 3445555543211122322210 112 122333
Q ss_pred -CCcEEEEcCCCCCC---C--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 109 -GMDLVIIPAGVPRK---P--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 109 -dADiVIi~ag~p~k---~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
|.|++|..+|.... + ..+.. ..+..|..-...+.+.+... ...+.|++++
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iS 192 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIG 192 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45589999886431 1 12222 34556655444444443322 2345566654
No 174
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.31 E-value=0.026 Score=55.45 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=44.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d---ADiVIi~a 117 (390)
|||+|||. |.+|++++..|...+. +|.+||.++.. +.++.+. . ++. ..++.+.++. +|+||++.
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~--g--~~~---~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEE--G--ATG---ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHC--C--Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence 58999999 9999999999998876 89999998621 2223221 1 222 1244455554 69999875
No 175
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.31 E-value=0.016 Score=55.82 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhC----CCC-----cEEEEEeCCc--hHH------HHHHHhcccCCCeEEEEeCCCCh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPG------VTADISHMDTGAVVRGFLGQPQL 103 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~----~~~-----~eL~L~Di~~--~~g------~a~DL~~~~~~~~v~~~~~t~dl 103 (390)
..||+++|| |..|..++.+|... ++- +.++|+|.+. ..+ ....+.+-.. .... ..++
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~--~~~~---~~~L 98 (255)
T PF03949_consen 25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTN--PEKD---WGSL 98 (255)
T ss_dssp G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSS--TTT-----SSH
T ss_pred HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCc--cccc---ccCH
Confidence 469999999 99999998766543 653 7899999986 122 2223333221 1111 1478
Q ss_pred hhhhCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHH
Q 016424 104 ENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVP 166 (390)
Q Consensus 104 ~~al~dA--DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~ 166 (390)
.++++++ |++|=+.|.|-. +-+++.+.|.++|++.+|+=.|||.. -+++
T Consensus 99 ~eav~~~kPtvLIG~S~~~g~--------------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p 151 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQGGA--------------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTP 151 (255)
T ss_dssp HHHHHCH--SEEEECSSSTTS--------------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred HHHHHhcCCCEEEEecCCCCc--------------CCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence 9999999 999988775432 23588899999999999999999998 6664
No 176
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.29 E-value=0.1 Score=48.54 Aligned_cols=116 Identities=15% Similarity=0.209 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------ 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------ 107 (390)
+.++|.|+||+|++|+.++..+...+. ++++++.++ ......++.... .++..+.+ -+|. .+.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999988876 888888875 233344443321 23443322 1221 1112
Q ss_pred -CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424 108 -TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (390)
Q Consensus 108 -~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN 159 (390)
.+.|+||..+|..... ..+.. ..+..|..-...+.+.+..+ ...+.+++++-
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 4789999998864321 12222 23445655555555554432 23456666653
No 177
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.29 E-value=0.014 Score=53.44 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC--CCChhhhhCCCcEEEE
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG--QPQLENALTGMDLVII 115 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~--t~dl~~al~dADiVIi 115 (390)
+.+++.|+||+|++|..++..+...+. ++.+++.+. +.....++.+.. ...+..... ..++.++++++|+||.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 457999999889999999998887764 899999875 233333343211 123332211 1234578999999888
Q ss_pred cCCCC
Q 016424 116 PAGVP 120 (390)
Q Consensus 116 ~ag~p 120 (390)
+...+
T Consensus 104 at~~g 108 (194)
T cd01078 104 AGAAG 108 (194)
T ss_pred CCCCC
Confidence 76433
No 178
>PLN02712 arogenate dehydrogenase
Probab=96.29 E-value=0.028 Score=61.44 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=47.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhh-CCCcEEEEc
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIP 116 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al-~dADiVIi~ 116 (390)
..+++||+|||. |.+|..++..+...+. +|..||.+.....+.++ .+..+ +++.+.+ ++||+||++
T Consensus 49 ~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~-------Gv~~~---~d~~e~~~~~aDvViLa 115 (667)
T PLN02712 49 NTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL-------GVSFF---LDPHDLCERHPDVILLC 115 (667)
T ss_pred cCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc-------CCEEe---CCHHHHhhcCCCEEEEc
Confidence 455689999998 9999999999988875 89999987522222221 12222 3455544 579999998
Q ss_pred C
Q 016424 117 A 117 (390)
Q Consensus 117 a 117 (390)
.
T Consensus 116 v 116 (667)
T PLN02712 116 T 116 (667)
T ss_pred C
Confidence 5
No 179
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.28 E-value=0.086 Score=49.56 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=67.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------C
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~ 108 (390)
++|.|+||+|++|..++..|+..+. +|+++|.+. ......++.+.....++..+.. -+| ...++ .
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998876 899999876 2333334433211123333221 122 12222 3
Q ss_pred CCcEEEEcCCCCCCC---CCCHHH---HHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 016424 109 GMDLVIIPAGVPRKP---GMTRDD---LFNINAG----IVRTLCEGIAKCCPNATVNLISNP 160 (390)
Q Consensus 109 dADiVIi~ag~p~k~---g~~r~~---l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tNP 160 (390)
..|+||..+|.+... ..+..+ .+..|+. +++.+.+.+.+..+++.+++++..
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~ 142 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK 142 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence 569999999865432 123322 2344543 345555555554545677776653
No 180
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.28 E-value=0.14 Score=47.73 Aligned_cols=78 Identities=24% Similarity=0.260 Sum_probs=50.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhhC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al~ 108 (390)
+++.|+||+|++|..++..|...+. ++++.|.+. ......++........+..+.+ -+|. .+.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999988875 899999876 2333344433211223443322 1222 12234
Q ss_pred CCcEEEEcCCCCC
Q 016424 109 GMDLVIIPAGVPR 121 (390)
Q Consensus 109 dADiVIi~ag~p~ 121 (390)
..|+||..+|...
T Consensus 81 ~id~vi~~ag~~~ 93 (248)
T PRK08251 81 GLDRVIVNAGIGK 93 (248)
T ss_pred CCCEEEECCCcCC
Confidence 6899999998754
No 181
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=96.27 E-value=0.076 Score=57.79 Aligned_cols=120 Identities=15% Similarity=0.045 Sum_probs=72.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh--CCCcE
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL--TGMDL 112 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al--~dADi 112 (390)
-+++||.|+||+|.||+.++..|...+...+|+.+|..........+........++.+.+. +| +...+ .++|+
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~ 83 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDT 83 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCE
Confidence 45789999999999999999988876434488888874311111112111111244443321 22 11222 68999
Q ss_pred EEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 113 VIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 113 VIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
||-+|+...... ....++...|+.-...+.+.+.+.+.-..+|.+|
T Consensus 84 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~S 131 (668)
T PLN02260 84 IMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVS 131 (668)
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence 999988653221 1234566788888888888887765333455544
No 182
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.27 E-value=0.066 Score=50.19 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL------- 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al------- 107 (390)
++++.|.||+|++|+.++..|+..+. ++++.+.++ ......++.+.. .++..+.+. +|. .+++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998887 899999987 233444454432 234333221 221 1222
Q ss_pred CCCcEEEEcCCCCCC-C--C---CCHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPRK-P--G---MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~k-~--g---~~r~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t 158 (390)
...|+||-.+|.... + . ..-...+..|..- .+.+.+.+.+.++.+.++++|
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 347999999886421 1 1 1122344556655 555555553334455666655
No 183
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.25 E-value=0.019 Score=58.28 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=50.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h----------------HHHHHHHhcccCCCeEEEEeC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------PGVTADISHMDTGAVVRGFLG 99 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~----------------~g~a~DL~~~~~~~~v~~~~~ 99 (390)
..||.|||+ |++|+.++..|+..+ +.+|+|+|-|. + ...+..|.+.....+++.+..
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 459999999 999999999999887 46899999984 0 111222333332334444321
Q ss_pred ---CCChhhhhCCCcEEEEcC
Q 016424 100 ---QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 100 ---t~dl~~al~dADiVIi~a 117 (390)
.++..+.++++|+||-+.
T Consensus 119 ~i~~~~~~~~~~~~DlVid~~ 139 (370)
T PRK05600 119 RLTAENAVELLNGVDLVLDGS 139 (370)
T ss_pred ecCHHHHHHHHhCCCEEEECC
Confidence 124456789999998875
No 184
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.25 E-value=0.055 Score=53.34 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHH--Hh--cccCCCeEEEEeCCCChhhhhCCCcEEE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTAD--IS--HMDTGAVVRGFLGQPQLENALTGMDLVI 114 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~D--L~--~~~~~~~v~~~~~t~dl~~al~dADiVI 114 (390)
.|||+|+|+ |+||+.++..|...+. ++.|++... ....-.+ +. +......+.... .+ .+.....|+||
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~-~~--~~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA-ET--ADAAEPIHRLL 75 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC-CC--cccccccCEEE
Confidence 479999999 9999999999988775 899999864 1111111 10 000001111111 11 13356889999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccc
Q 016424 115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML 189 (390)
Q Consensus 115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~L 189 (390)
++... .. ..+..+.+..+ .+++.++.+-|=++....+ ++. ++..++++- +..
T Consensus 76 v~vK~------------~~----~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l-----~~~--~~~~~v~~g~~~~ 129 (305)
T PRK05708 76 LACKA------------YD----AEPAVASLAHRLAPGAELLLLQNGLGSQDAV-----AAR--VPHARCIFASSTE 129 (305)
T ss_pred EECCH------------Hh----HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH-----HHh--CCCCcEEEEEeee
Confidence 99621 11 22334445444 4888888899998876432 332 566677754 443
No 185
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.23 E-value=0.023 Score=56.58 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
..+|+|||+ |.+|...+..+.....+.++.++|.+. ....+.++.+.. ...+..+ +|+++++.+||+||.+..
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~---~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVV---NSADEAIEEADIIVTVTN 201 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEccC
Confidence 468999999 999988776665444578999999987 344555554321 2344443 467889999999998754
No 186
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.23 E-value=0.027 Score=48.93 Aligned_cols=73 Identities=23% Similarity=0.416 Sum_probs=47.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeCC-
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLGQ- 100 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~t- 100 (390)
||.|||+ |++|+.++..|+..+. .++.|+|-+. +...+..+.......+++.+...
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~ 78 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGI 78 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 6899999 9999999999999885 6899999873 01111222222223444444311
Q ss_pred --CChhhhhCCCcEEEEcC
Q 016424 101 --PQLENALTGMDLVIIPA 117 (390)
Q Consensus 101 --~dl~~al~dADiVIi~a 117 (390)
.+..+.+++.|+||.+.
T Consensus 79 ~~~~~~~~~~~~diVi~~~ 97 (143)
T cd01483 79 SEDNLDDFLDGVDLVIDAI 97 (143)
T ss_pred ChhhHHHHhcCCCEEEECC
Confidence 11135588999999986
No 187
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.22 E-value=0.074 Score=53.00 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE--eCCchHH--HHHHHhcccCCCeEEEEeC----CCChhhhhCCCc
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY--DVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENALTGMD 111 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~--Di~~~~g--~a~DL~~~~~~~~v~~~~~----t~dl~~al~dAD 111 (390)
.+++|+|.||+|.||+.++..|.+.|. +++-- |..+.+. +..+|.... .+++.+.+ .+.+.+|+++||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence 467999999999999999999999997 44332 3222222 455565433 22443322 356789999999
Q ss_pred EEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424 112 LVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (390)
Q Consensus 112 iVIi~ag~p~k~g~-~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd 162 (390)
.|+=+|...--... .-.+++.-.++-.+.+.+++.++. ...=+++|.-..
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~a 131 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTA 131 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHH
Confidence 99999864322222 244677777888888888888877 444455665443
No 188
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.21 E-value=0.018 Score=57.81 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=49.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h----------------HH--HHHHHhcccCCCeEEEEe
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------PG--VTADISHMDTGAVVRGFL 98 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~----------------~g--~a~DL~~~~~~~~v~~~~ 98 (390)
.||.|||+ |++|+.++..|+..+ +.+|.|+|-|. + +. .+..+.+......++.+.
T Consensus 25 ~~VlVvG~-GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 25 KHVLIIGA-GALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 49999999 999999999999887 46899999874 0 00 112233333233444432
Q ss_pred C---CCChhhhhCCCcEEEEcC
Q 016424 99 G---QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 99 ~---t~dl~~al~dADiVIi~a 117 (390)
. .++..+.++++|+||.+.
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~~ 124 (339)
T PRK07688 103 QDVTAEELEELVTGVDLIIDAT 124 (339)
T ss_pred ccCCHHHHHHHHcCCCEEEEcC
Confidence 1 123446689999999985
No 189
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=96.21 E-value=0.024 Score=54.25 Aligned_cols=95 Identities=23% Similarity=0.305 Sum_probs=65.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCC--cEEEEcCCCC
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP 120 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dA--DiVIi~ag~p 120 (390)
||.|+||+|.+|+.++..|...+. ++++++... .|+.+ ..++.++++++ |+||.+++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999998888775 888887641 11211 12345667766 9999998864
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 121 RKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 121 ~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
.... .........|+.....+++.+.+... .++++|
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 3221 23445677888888888888876643 455444
No 190
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.19 E-value=0.031 Score=54.26 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
++||++||+ |++|+.++..|...+ ...+|...|.++.+.. ++.... +..+ ++|..++...+|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~~-g~~~-----~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAEY-GVVT-----TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHHc-CCcc-----cCcHHHHHhhCCEEEEEe-
Confidence 579999999 999999999888877 3468999998762221 333221 1121 245568899999999997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd 162 (390)
||- .+.++.+.+....++-+||-+.-.+.
T Consensus 71 ---KPq------------~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 71 ---KPQ------------DLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ---ChH------------hHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 442 36677777776456666666654443
No 191
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.17 E-value=0.024 Score=54.21 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=47.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
|||+|||+ |.+|+.++..|...+. ...+.++|.+... +.++.+.. ..++.. ++..+++++||+||++..
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEeC
Confidence 58999999 9999999998887763 4567888876522 22232211 123332 355677899999999873
No 192
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.095 Score=56.47 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=67.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-CC--------hhhhhCCCcE
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ--------LENALTGMDL 112 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~d--------l~~al~dADi 112 (390)
|||.|+||+|.+|+.++..|.......+|+.++.+.......++.......+++.+.+. +| ..+.++++|+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D~ 80 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDIDH 80 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCCE
Confidence 68999999999999999988853334489999986522222222111001233333221 11 1123489999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016424 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 151 (390)
Q Consensus 113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~ 151 (390)
||-+++... ......+....|+.-...+.+.+.+..-.
T Consensus 81 Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~ 118 (657)
T PRK07201 81 VVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAA 118 (657)
T ss_pred EEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 999987532 22334556677888888888887776433
No 193
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.16 E-value=0.052 Score=53.29 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=44.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d---ADiVIi~a 117 (390)
|||+|||. |.+|++++..|...+. +|+.||.+... +..+.+.. .+. ..++.+.+++ +|+||++.
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence 58999999 9999999999988876 89999987522 22232211 222 2355566655 68999875
No 194
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.16 E-value=0.026 Score=56.45 Aligned_cols=97 Identities=21% Similarity=0.256 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
..++|+|||. |.||+.++..+...+. ++..||......... .. .+. + .++.+.++.||+|++....
T Consensus 149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~-----~~~-~---~~l~ell~~aDiV~l~lP~ 214 (333)
T PRK13243 149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL-----GAE-Y---RPLEELLRESDFVSLHVPL 214 (333)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc-----CCE-e---cCHHHHHhhCCEEEEeCCC
Confidence 4579999999 9999999999987776 899999865221111 11 112 1 2578899999999998622
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCcc
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS 163 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~ 163 (390)
. + .+..++-+ +.+....|++++||++ ..+|.
T Consensus 215 t--~---------~T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 215 T--K---------ETYHMINE--ERLKLMKPTAILVNTARGKVVDT 247 (333)
T ss_pred C--h---------HHhhccCH--HHHhcCCCCeEEEECcCchhcCH
Confidence 1 1 11222211 3444456899999996 44443
No 195
>PLN02256 arogenate dehydrogenase
Probab=96.15 E-value=0.032 Score=55.14 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhh-CCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al-~dADiVIi~a 117 (390)
+++||+|||+ |.+|..++..+...+. +++.||.+.....+.++ . +..+ ++..+.+ .++|+||++.
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~-----g--v~~~---~~~~e~~~~~aDvVilav 100 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL-----G--VSFF---RDPDDFCEEHPDVVLLCT 100 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc-----C--Ceee---CCHHHHhhCCCCEEEEec
Confidence 5679999998 9999999999987774 89999988632222221 1 1222 3555655 4799999986
No 196
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.14 E-value=0.041 Score=52.98 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=79.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhC----CC-----CcEEEEEeCCc--hHHH------HHHHhcccCCCeEEEEeCCCCh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKIN----PL-----VSVLHLYDVVN--TPGV------TADISHMDTGAVVRGFLGQPQL 103 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~----~~-----~~eL~L~Di~~--~~g~------a~DL~~~~~~~~v~~~~~t~dl 103 (390)
..||++.|| |..|..++.+|... ++ -+.++++|... ..+. -..+.+.. .. -. ...+|
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~-~~-~~---~~~~L 98 (254)
T cd00762 25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFA-NP-ER---ESGDL 98 (254)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHc-Cc-cc---ccCCH
Confidence 469999999 99999999777543 21 24899999986 1111 11111111 11 11 12589
Q ss_pred hhhhC--CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhCCCC
Q 016424 104 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYD 179 (390)
Q Consensus 104 ~~al~--dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~i~ae~~~~~s~~p 179 (390)
.++++ ++|++|=+.+.|-- +=+++.+.|.++|++.+|+-.+||.. -+++ |-.++.+ +
T Consensus 99 ~eav~~~kptvlIG~S~~~g~--------------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t--~ 159 (254)
T cd00762 99 EDAVEAAKPDFLIGVSRVGGA--------------FTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT--E 159 (254)
T ss_pred HHHHHhhCCCEEEEeCCCCCC--------------CCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc--C
Confidence 99999 99999987765521 23478888999999999999999997 5544 2223332 1
Q ss_pred CCceeecc
Q 016424 180 PKKLLGVT 187 (390)
Q Consensus 180 ~~kviG~t 187 (390)
-+.+|++.
T Consensus 160 G~ai~AtG 167 (254)
T cd00762 160 GRAIFASG 167 (254)
T ss_pred CCEEEEEC
Confidence 36788874
No 197
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.14 E-value=0.022 Score=54.61 Aligned_cols=74 Identities=20% Similarity=0.344 Sum_probs=48.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH----------------HHHHHHhcccCCCeEEEEeCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP----------------GVTADISHMDTGAVVRGFLGQ 100 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~----------------g~a~DL~~~~~~~~v~~~~~t 100 (390)
.||.|||+ |++|+.++..|+..+ +.+|.|+|-|. +. ..+..|.......+++.+...
T Consensus 33 ~~VliiG~-GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~ 110 (245)
T PRK05690 33 ARVLVVGL-GGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR 110 (245)
T ss_pred CeEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence 49999999 999999999999887 46899999875 10 112233333323444443321
Q ss_pred ---CChhhhhCCCcEEEEcC
Q 016424 101 ---PQLENALTGMDLVIIPA 117 (390)
Q Consensus 101 ---~dl~~al~dADiVIi~a 117 (390)
.+..+-++++|+||.+.
T Consensus 111 i~~~~~~~~~~~~DiVi~~~ 130 (245)
T PRK05690 111 LDDDELAALIAGHDLVLDCT 130 (245)
T ss_pred CCHHHHHHHHhcCCEEEecC
Confidence 12334578899988875
No 198
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.13 E-value=0.021 Score=54.60 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
..||.|+|+ |++|+.++..|+..+ +.+|.|+|-|.
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~G-vg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAG-VGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcC-CCEEEEEeCCc
Confidence 359999999 999999999999887 56899999875
No 199
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.12 E-value=0.028 Score=55.47 Aligned_cols=73 Identities=16% Similarity=0.072 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
....++|||+ |..|...+..+..-..+.++.+||++. +...+.++.+.. ..++... ++.++++++||+|+.+.
T Consensus 116 da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT 190 (301)
T PRK06407 116 NVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSIT 190 (301)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEec
Confidence 3469999999 988887777776656689999999987 455666676532 3456653 46789999999999864
No 200
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=96.11 E-value=0.024 Score=53.70 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=42.1
Q ss_pred HHHHHHHcccCCCCceEEEe-eeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHhHH
Q 016424 274 KFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYESGLFCLLHL 338 (390)
Q Consensus 274 ~lv~aIl~~~~~~~~v~~~s-~~~g~~---~~~~~~svPv~ig~~Gv~~i~~l~~Ls~~E~~~L~~~~~ 338 (390)
.++++|.+|.+ .++.++ .++|.+ |+|.++++||+|+++|+.++.. ++|++...++++....
T Consensus 141 ~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~~ 205 (232)
T PF11975_consen 141 AAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVKA 205 (232)
T ss_dssp HHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHHH
T ss_pred HHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHHH
Confidence 45555676643 355554 578876 7899999999999999999665 7999999998875554
No 201
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.10 E-value=0.14 Score=47.69 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCCh---h-------hhhC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---E-------NALT 108 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~dl---~-------~al~ 108 (390)
+.++|.|+||+|++|..++..|...+. ++++.+.+........+.... .++..+.. -++. . +...
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456899999999999999999998886 899999865333333333221 22332221 1221 1 1224
Q ss_pred CCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHH----HhCCCcEEEEec
Q 016424 109 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLIS 158 (390)
Q Consensus 109 dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~----~~~p~a~iiv~t 158 (390)
..|++|..+|...... .+. .+.+..|..-...+.+.+. +....+.+++++
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 139 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIA 139 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 6899999988642111 111 2335566554444444443 333346666655
No 202
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=96.10 E-value=0.068 Score=52.77 Aligned_cols=110 Identities=16% Similarity=0.007 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhc-c-cCCCeEEEEeC----CCChhhhhCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISH-M-DTGAVVRGFLG----QPQLENALTG 109 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~-~-~~~~~v~~~~~----t~dl~~al~d 109 (390)
.++++|.|.||+|++|+.++..|...+. +++++|.+.. ......+.. . .....+....+ ..++.+++++
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 81 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDD 81 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHH
Confidence 4567999999999999999999998876 8888887541 111222211 0 00122332221 1233455654
Q ss_pred --CcEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCC
Q 016424 110 --MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCP 150 (390)
Q Consensus 110 --ADiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p 150 (390)
.|+||-+|+...... ......+..|+.-...+.+.+.++..
T Consensus 82 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~ 126 (340)
T PLN02653 82 IKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ 126 (340)
T ss_pred cCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence 599999998643221 12234456777777888888877763
No 203
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.10 E-value=0.024 Score=56.47 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=52.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
..+|+|||+ |..|...+..+.....+.++.+||.+. +...+.++.+. ...+... ++.++++++||+|+++.
T Consensus 128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~~---~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRAA---TDPREAVEGCDILVTTT 200 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEEe---CCHHHHhccCCEEEEec
Confidence 469999999 999998777666555679999999987 34455555532 2344443 46789999999999864
No 204
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=96.09 E-value=0.12 Score=48.04 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------- 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------- 107 (390)
+++|.|+||+|++|+.++..|...+. +++++|.+. ......++.... .++..+.+. +| .++++
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999988876 899999876 233334444322 223332221 12 22222
Q ss_pred CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
...|+||..+|...... .+.. ..+..|..-...+.+.+..+ .+.+.+++++
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~is 138 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIA 138 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 35799999987532211 2222 23556666555555554322 2334455555
No 205
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.09 E-value=0.021 Score=56.59 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh-CCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~-~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
...++|||+ |..+...+..+.. .+ +.+|.+||++. +...+.++.+ . ...+... +|.++|+++||+|+.+.
T Consensus 128 ~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT 200 (313)
T ss_dssp --EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred CceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence 358999999 9888877776655 45 89999999987 4667788887 3 4566654 47899999999999853
No 206
>PLN02572 UDP-sulfoquinovose synthase
Probab=96.08 E-value=0.07 Score=55.35 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=71.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HH------------HHHHHh---cccCCCeEEEEeC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG------------VTADIS---HMDTGAVVRGFLG 99 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g------------~a~DL~---~~~~~~~v~~~~~ 99 (390)
..+++||.|+||+|+||+.++..|...+. +|+++|.... .. ....+. +.. ...++.+.+
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~ 120 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVG 120 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEEC
Confidence 45578999999999999999999998876 8999884320 00 001111 100 112333322
Q ss_pred C----CChhhhhC--CCcEEEEcCCCCCCC-CC-CH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424 100 Q----PQLENALT--GMDLVIIPAGVPRKP-GM-TR---DDLFNINAGIVRTLCEGIAKCCPNATVNLI 157 (390)
Q Consensus 100 t----~dl~~al~--dADiVIi~ag~p~k~-g~-~r---~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~ 157 (390)
. .++.++++ +.|+||-.|+....+ .. +. ...+..|+.-...+.+.+.+++....++.+
T Consensus 121 Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~ 189 (442)
T PLN02572 121 DICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKL 189 (442)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEE
Confidence 1 23344555 479999988653321 11 11 233567999999999998888765555533
No 207
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.07 E-value=0.031 Score=52.51 Aligned_cols=111 Identities=11% Similarity=0.128 Sum_probs=63.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~ 108 (390)
|+|.|+||+|++|..++..|...+. +++++|.+.. .....++. .++..+.+ -+| ++++ +.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 73 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWR 73 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc-----cceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999988876 8999998752 22222221 12222211 112 1222 24
Q ss_pred CCcEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 016424 109 GMDLVIIPAGVPR--KP--GMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLISN 159 (390)
Q Consensus 109 dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~tN 159 (390)
+.|+||..+|... .+ ..+.. ..+..|..-...+.+.+..+. ..+.++++|-
T Consensus 74 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 134 (248)
T PRK10538 74 NIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGS 134 (248)
T ss_pred CCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 7999999988642 22 22332 335556555444444444332 2355666654
No 208
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.07 E-value=0.057 Score=55.60 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhCCCcEEE
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI 114 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~dADiVI 114 (390)
-++++|.|+||+|++|..++..+...+. +++++|.++.. ....+.+.. ..+..... .+++.+.+.+.|++|
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~--~~v~~v~~Dvsd~~~v~~~l~~IDiLI 250 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGED--LPVKTLHWQVGQEAALAELLEKVDILI 250 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcC--CCeEEEEeeCCCHHHHHHHhCCCCEEE
Confidence 3567999999999999999999998876 88889887521 111121111 11221111 123345578899999
Q ss_pred EcCCCCCCCCCCHH---HHHHHHHH----HHHHHHHHHHH
Q 016424 115 IPAGVPRKPGMTRD---DLFNINAG----IVRTLCEGIAK 147 (390)
Q Consensus 115 i~ag~p~k~g~~r~---~l~~~N~~----ii~~ia~~I~~ 147 (390)
..+|.......+.. +.+..|.. +++.+.+.+.+
T Consensus 251 nnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~ 290 (406)
T PRK07424 251 INHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT 290 (406)
T ss_pred ECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99886543333332 34555654 44444444443
No 209
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=96.07 E-value=0.067 Score=51.60 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=65.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCC----CChhhhhC--CCcEEE
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ----PQLENALT--GMDLVI 114 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t----~dl~~al~--dADiVI 114 (390)
||.|+||+|.+|..++..|...+. +++++|.... ......+.+. ..++.+.+. .++.++++ +.|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 689999999999999999988775 7888875431 1111122211 123322221 22334443 689999
Q ss_pred EcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 016424 115 IPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNA 152 (390)
Q Consensus 115 i~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~p~a 152 (390)
..+|....+. ....+.+..|+.....+.+.+.++....
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 115 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKK 115 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCE
Confidence 9998653221 2334556778888888888887765443
No 210
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.03 E-value=0.064 Score=49.30 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe--CCCChhhhh-------CC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL--GQPQLENAL-------TG 109 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~--~t~dl~~al-------~d 109 (390)
.++|.|+||+|++|..++..+++.+. +++++|.+. ......++.... ..+.... ...++.+++ ..
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADA--LRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcC--ceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999988876 799999876 222233343221 1111110 011222222 36
Q ss_pred CcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 110 MDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 110 ADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
.|+||..+|..... ..+.. +.+..|..-...+++.+.+. .+...+++++
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~s 140 (239)
T PRK12828 83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIG 140 (239)
T ss_pred cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 89999988753211 11222 23445555445555544322 3345566554
No 211
>PRK07574 formate dehydrogenase; Provisional
Probab=96.01 E-value=0.044 Score=56.04 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
-..++|.|||. |.||+.++..+...+. +|+-||.... .....++ .++.+ .++++.++.||+|++..
T Consensus 190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~~~~-------g~~~~---~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVEQEL-------GLTYH---VSFDSLVSVCDVVTIHC 256 (385)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhHhhc-------Cceec---CCHHHHhhcCCEEEEcC
Confidence 34579999999 9999999999887776 8999998652 1111111 12222 36789999999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
... ..+-.++- .+.+....|++++||++
T Consensus 257 Plt-----------~~T~~li~--~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 257 PLH-----------PETEHLFD--ADVLSRMKRGSYLVNTA 284 (385)
T ss_pred CCC-----------HHHHHHhC--HHHHhcCCCCcEEEECC
Confidence 221 12222221 24455556899999986
No 212
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.01 E-value=0.038 Score=56.13 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=44.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.++|+|||.+|.+|..++..|.... ..+|+-||.+ |. +.+++.+++++||+||++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence 4699999999999999999999762 4488889873 10 1235568899999999985
No 213
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.083 Score=50.23 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=57.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE-eCCCChhhhhCCCcEEEEcCCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~dADiVIi~ag~p 120 (390)
+++.|+||+|++|..++..++..+. +++++|.+......... +.. ...+..- +...+..+.+...|++|..+|..
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence 5889999999999999999998886 88889987521111111 111 1111110 11123345677899999999874
Q ss_pred CCCCCCHH---HHHHHHHHHHHHHHHH
Q 016424 121 RKPGMTRD---DLFNINAGIVRTLCEG 144 (390)
Q Consensus 121 ~k~g~~r~---~l~~~N~~ii~~ia~~ 144 (390)
.....+.. +.+..|..-...+++.
T Consensus 91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~ 117 (245)
T PRK12367 91 PGGRQDPENINKALEINALSSWRLLEL 117 (245)
T ss_pred CcCCCCHHHHHHHHHHHhHHHHHHHHH
Confidence 32223332 3455665444444443
No 214
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=96.01 E-value=0.085 Score=52.18 Aligned_cols=106 Identities=13% Similarity=0.002 Sum_probs=64.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHh-cc--cCCCeEEEEeCC-C---ChhhhhCC--
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADIS-HM--DTGAVVRGFLGQ-P---QLENALTG-- 109 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~-~~--~~~~~v~~~~~t-~---dl~~al~d-- 109 (390)
+||.|.||+|.+|+.++..|...+. +|+++|.+.. ......+. +. .....++.+.+. + ++.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 4899999999999999999988876 8999987641 11112221 00 001223333221 2 33455664
Q ss_pred CcEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhC
Q 016424 110 MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCC 149 (390)
Q Consensus 110 ADiVIi~ag~p~k~g--~~r~~l~~~N~~ii~~ia~~I~~~~ 149 (390)
.|+||-+|+...... ......+..|+.-...+.+.+.+++
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~ 120 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG 120 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 599999988643221 1223344567666677777777764
No 215
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.00 E-value=0.15 Score=47.92 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l 107 (390)
.++|.|+||+|++|..++..|+..+. +|++.|.++ ......++.+. ..++..+.. -+| +.++ +
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999988876 899999886 23333334332 122332221 112 2222 2
Q ss_pred CCCcEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 016424 108 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP 160 (390)
Q Consensus 108 ~dADiVIi~ag~p~k-~--g~~r---~~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~tNP 160 (390)
...|+||..+|.... + ..+. ...+..|+.-...+.+.+.++. ..+.++++|..
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 147 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV 147 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence 347999999886431 1 1121 2345567665555555555442 34567776643
No 216
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.00 E-value=0.034 Score=55.45 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
...+++|||+ |..+...+..+.....+.++.+|+.+. +...+.++.+.. ...+.. .+++++++.+||+||.+.
T Consensus 128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 128 DSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTT 202 (326)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEec
Confidence 3469999999 999988888776544578999999987 455556664321 223433 257889999999999975
Q ss_pred C
Q 016424 118 G 118 (390)
Q Consensus 118 g 118 (390)
.
T Consensus 203 ~ 203 (326)
T TIGR02992 203 P 203 (326)
T ss_pred C
Confidence 3
No 217
>PRK05875 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.13 Score=48.95 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------ 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------ 108 (390)
.++|.|+||+|++|..++..|...+. +|++++.+. ......++.......++..+.+ -+| +.+.++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998886 899999875 2333344432211123333321 112 222233
Q ss_pred -CCcEEEEcCCCCCCC----CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 109 -GMDLVIIPAGVPRKP----GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 109 -dADiVIi~ag~p~k~----g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
..|+||..+|..... ..+.. ..+..|..-...+.+.+.++ ...+.++++|
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~s 145 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGIS 145 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 679999998854221 12222 23445655555555444332 2345666665
No 218
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.051 Score=52.23 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=67.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCC-cEEEEcCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGM-DLVIIPAGV 119 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dA-DiVIi~ag~ 119 (390)
|+|.|+||+|.||+.++..|.+.+. +++.+|.........+ .+... ...+.- .....+++++. |.||-+++.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEcccc
Confidence 3599999999999999999999876 9999998652111111 11110 011111 12234556677 999999887
Q ss_pred CCCCCCCH---HHHHHHHHHHHHHHHHHHHH
Q 016424 120 PRKPGMTR---DDLFNINAGIVRTLCEGIAK 147 (390)
Q Consensus 120 p~k~g~~r---~~l~~~N~~ii~~ia~~I~~ 147 (390)
...++..+ .++...|+.-.+.+.++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 65555433 35788999999999999988
No 219
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.097 Score=48.81 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------ 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------ 107 (390)
+++|.|+||+|++|..++..|...+. ++++.+.+. ......++.... .++..+.+ -+|. ..++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999988876 788888764 222333443221 22332221 1222 2222
Q ss_pred -CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424 108 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 158 (390)
Q Consensus 108 -~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t 158 (390)
.+.|+||..+|............+..|..-...+.+.+.++. ..+.++++|
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 368999998875322111222233455555555566665553 345566554
No 220
>PRK05855 short chain dehydrogenase; Validated
Probab=96.00 E-value=0.21 Score=52.41 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh------
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA------ 106 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a------ 106 (390)
.+.+++.|+||+|++|..++..|+..+. +|++.|.+. ....+.++.... ..+..+.. -+|. .+.
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~ 388 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRA 388 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999998886 799999986 333444454322 22333221 1222 111
Q ss_pred -hCCCcEEEEcCCCCCCCC---CCHH---HHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424 107 -LTGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 107 -l~dADiVIi~ag~p~k~g---~~r~---~l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
+...|++|..+|...... .+.. ..+..|. ...+.+.+.+.+....+.|+++|-
T Consensus 389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS 452 (582)
T PRK05855 389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS 452 (582)
T ss_pred hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 224799999999754321 2222 2344564 344445555555555566776653
No 221
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.99 E-value=0.03 Score=51.82 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
..||.|||+ |++|+.++..|+..+. .+|.|+|-+.
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 359999999 9999999999999884 6899999773
No 222
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.96 E-value=0.12 Score=50.64 Aligned_cols=114 Identities=17% Similarity=0.323 Sum_probs=74.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-----------CCChh
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-----------QPQLE 104 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-----------t~dl~ 104 (390)
......|.|.||++++|..+++.++..+- .++|||++. ...-+..+.+.. .++.+.. ....+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHH
Confidence 44556888999988999999999998886 899999998 344444555431 2222221 12235
Q ss_pred hhhCCCcEEEEcCCC-CCCCC--CCHHHH---HHHH----HHHHHHHHHHHHHhCCCcEEEEe
Q 016424 105 NALTGMDLVIIPAGV-PRKPG--MTRDDL---FNIN----AGIVRTLCEGIAKCCPNATVNLI 157 (390)
Q Consensus 105 ~al~dADiVIi~ag~-p~k~g--~~r~~l---~~~N----~~ii~~ia~~I~~~~p~a~iiv~ 157 (390)
+.+.+.|++|..||+ |-++. +++.++ ++-| ....+++.+.+.+.+ ++-|+.+
T Consensus 110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~I 171 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTI 171 (300)
T ss_pred HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEe
Confidence 567899999999995 44544 333322 2333 466788888888766 4544444
No 223
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.95 E-value=0.057 Score=49.65 Aligned_cols=74 Identities=20% Similarity=0.122 Sum_probs=49.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~ 121 (390)
|||+||||+|.+|+-++......++ |+.-+=.+..+-.+ +.... -.+-.+|. .+.+.++++|-|+||.+.|.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~--~~~~~-i~q~Difd-~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAA--RQGVT-ILQKDIFD-LTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccc--cccce-eecccccC-hhhhHhhhcCCceEEEeccCCC
Confidence 7999999999999999999999998 77777666522111 01100 01112221 2334578999999999977654
No 224
>PRK06914 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.15 Score=48.60 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=63.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChhh---------hhCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLEN---------ALTG 109 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~~---------al~d 109 (390)
+.+.|+||+|++|..++..|+..+. +|++++.+. ......++.+.....++..+.+ -+|.++ .+..
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4689999999999999999998876 889998875 2223333332221223443322 123211 1235
Q ss_pred CcEEEEcCCCCCC--CC-CCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 016424 110 MDLVIIPAGVPRK--PG-MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLIS 158 (390)
Q Consensus 110 ADiVIi~ag~p~k--~g-~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~t 158 (390)
.|+||..+|.+.. .. .+. .+.+..|..-...+.+.+ .+... +.+++++
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vs 139 (280)
T PRK06914 82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINIS 139 (280)
T ss_pred eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEC
Confidence 7999999886432 11 121 233456665554555443 43333 4455444
No 225
>PRK12937 short chain dehydrogenase; Provisional
Probab=95.92 E-value=0.12 Score=47.90 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC----
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-P---QLENALT---- 108 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~---- 108 (390)
+.++|.|+||+|++|+.++..|...+. ++++.+.+. ......++.... .++..+... + +++++++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999998886 777776543 222333443322 234433211 1 2233333
Q ss_pred ---CCcEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 016424 109 ---GMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS 158 (390)
Q Consensus 109 ---dADiVIi~ag~p~k-~--g~~---r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~t 158 (390)
+.|+||..+|.... + ..+ -...+..|+.-...+.+.+.+. .+++.++++|
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 68999999986421 1 111 1233556665555555554443 3456677665
No 226
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.91 E-value=0.039 Score=54.50 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
...+|+|||+ |..|...+..+.....+.++.+||.+. +...+.++... ...+. . .+.++++.+||+||.+.
T Consensus 124 ~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~-~---~~~~~av~~aDiVitaT 196 (304)
T PRK07340 124 PPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--GPTAE-P---LDGEAIPEAVDLVVTAT 196 (304)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--CCeeE-E---CCHHHHhhcCCEEEEcc
Confidence 4569999999 999999998886543357999999987 44555556532 12333 1 46778999999999975
Q ss_pred C
Q 016424 118 G 118 (390)
Q Consensus 118 g 118 (390)
.
T Consensus 197 ~ 197 (304)
T PRK07340 197 T 197 (304)
T ss_pred C
Confidence 4
No 227
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.23 Score=46.55 Aligned_cols=75 Identities=24% Similarity=0.417 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA------- 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a------- 106 (390)
+.++|.|+||+|++|+.++..|..++. ++++++.+. ......++.+. ++..+.+ -+|. .++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEAALAATAARLPGA----KVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC----ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999988886 799999875 22222222221 2222221 1221 122
Q ss_pred hCCCcEEEEcCCCC
Q 016424 107 LTGMDLVIIPAGVP 120 (390)
Q Consensus 107 l~dADiVIi~ag~p 120 (390)
+.+.|+||..+|..
T Consensus 84 ~~~~d~vi~~ag~~ 97 (264)
T PRK12829 84 FGGLDVLVNNAGIA 97 (264)
T ss_pred hCCCCEEEECCCCC
Confidence 24789999998864
No 228
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=95.91 E-value=0.023 Score=54.69 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCC--cEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~--~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
.|||+|||+ |.+|+.++..|...+.. .+++.+|.+... + .+.. ..+..++++++|+||++.
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav- 65 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV- 65 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe-
Confidence 379999999 99999999999887633 358888886421 0 1122 134457788999999985
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd 162 (390)
+|. .+.++.+.+..+-++..+|.+.+-+.
T Consensus 66 ---kp~------------~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 66 ---KPD------------LAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred ---CHH------------HHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 111 23444445544333344566666655
No 229
>PRK08605 D-lactate dehydrogenase; Validated
Probab=95.91 E-value=0.029 Score=56.05 Aligned_cols=65 Identities=26% Similarity=0.378 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
-..++|+|||. |.+|+.++..++. +..-+|+.||....... .. .++. .+++.+++++||+|++..
T Consensus 144 l~g~~VgIIG~-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~----~~-----~~~~---~~~l~ell~~aDvIvl~l 208 (332)
T PRK08605 144 IKDLKVAVIGT-GRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA----AT-----YVDY---KDTIEEAVEGADIVTLHM 208 (332)
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCccHhH----Hh-----hccc---cCCHHHHHHhCCEEEEeC
Confidence 34679999999 9999999998843 33338999998652211 10 1221 247889999999999986
No 230
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.90 E-value=0.042 Score=54.46 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
...+|+|||+ |.+|...+..+.....+.+|.+||.+. ....+.++.+. ...+... .+.++++++||+|+.+.
T Consensus 124 ~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 124 DASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCAT 197 (314)
T ss_pred CCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEee
Confidence 3569999999 999999987665533367999999986 34555665542 2234443 46778999999997654
Q ss_pred C
Q 016424 118 G 118 (390)
Q Consensus 118 g 118 (390)
.
T Consensus 198 ~ 198 (314)
T PRK06141 198 L 198 (314)
T ss_pred C
Confidence 3
No 231
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.90 E-value=0.063 Score=50.79 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=69.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
+||.+||. |.+|..+.-++...+ .+.-+.+||.+..+ +..+...-. .+. .+++.+.+.+.|+||-+|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~~~~~-~~~-----~s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELEASVG-RRC-----VSDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHHhhcC-CCc-----cccHHHHhhccceeeeeCC--
Confidence 68999999 999999998888775 35678889987632 222332211 111 1356677799999999984
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (390)
Q Consensus 121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd 162 (390)
.+.+++++.++-+.+.|.+|+-++-=+|
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 4468999999999999988876654443
No 232
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.87 E-value=0.099 Score=48.81 Aligned_cols=76 Identities=20% Similarity=0.372 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-C---Chhhhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-P---QLENAL------- 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al------- 107 (390)
+++|.|+||+|++|+.++..|...+. +++++|.+. ......++... ..++..+.+. + ++.+++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999988876 899999976 23334444321 1233332211 1 222222
Q ss_pred CCCcEEEEcCCCC
Q 016424 108 TGMDLVIIPAGVP 120 (390)
Q Consensus 108 ~dADiVIi~ag~p 120 (390)
.+.|+||..+|..
T Consensus 80 ~~~d~vi~~a~~~ 92 (258)
T PRK12429 80 GGVDILVNNAGIQ 92 (258)
T ss_pred CCCCEEEECCCCC
Confidence 3689999998864
No 233
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.87 E-value=0.18 Score=47.55 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=49.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~ 108 (390)
|+|.|+||+|++|..++..++..+. ++++.|.++ ......++.+.. .+..+.. -+| .+++ +.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 6899999999999999999998886 799999876 233444454321 2222221 122 2222 34
Q ss_pred CCcEEEEcCCCC
Q 016424 109 GMDLVIIPAGVP 120 (390)
Q Consensus 109 dADiVIi~ag~p 120 (390)
.-|++|..+|..
T Consensus 76 ~id~li~naG~~ 87 (259)
T PRK08340 76 GIDALVWNAGNV 87 (259)
T ss_pred CCCEEEECCCCC
Confidence 689999999864
No 234
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.057 Score=51.22 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l 107 (390)
.+++.|+||+|++|..++..|...+. +|++.|.+. ......++. .++..+.+ -+| +.++ +
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999998886 899999876 222222221 12222211 112 2222 2
Q ss_pred CCCcEEEEcCCCCCCC--CCCHH---HHHHHHHHHHHHHHHHHHHh--CCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPRKP--GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~--g~~r~---~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~t 158 (390)
...|++|..+|..... ..+.. ..+..|+.-...+.+.+..+ .+.+.+++++
T Consensus 79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~is 136 (261)
T PRK08265 79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFT 136 (261)
T ss_pred CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 3579999998864322 22222 23444555444444433322 3456666665
No 235
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.015 Score=54.94 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=46.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHH-HhcccCCCeEEEEeCC--CChhhh-hCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-ISHMDTGAVVRGFLGQ--PQLENA-LTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~D-L~~~~~~~~v~~~~~t--~dl~~a-l~dADiVIi~a 117 (390)
|+|+|||+ |.+|++++..|...+. +++++|.++.. +.. +++.....-+.+ .++ +-|++| +.++|.+|.+.
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~--~~~~~~~~~~~~~v~g-d~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEER--VEEFLADELDTHVVIG-DATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHH--HHHHhhhhcceEEEEe-cCCCHHHHHhcCCCcCCEEEEee
Confidence 68999999 9999999999999987 89999998721 111 121110011211 111 123444 77889999976
Q ss_pred C
Q 016424 118 G 118 (390)
Q Consensus 118 g 118 (390)
|
T Consensus 75 ~ 75 (225)
T COG0569 75 G 75 (225)
T ss_pred C
Confidence 4
No 236
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.19 Score=47.36 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------- 107 (390)
.+.+.|.||+|++|..++..|+..+. +|+++|.+. ....+.++.......++..+.. -+| +.+++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999998886 899999876 3344445543111223333221 122 22222
Q ss_pred CCCcEEEEcCCCCCC-C-C-CCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 016424 108 TGMDLVIIPAGVPRK-P-G-MTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 108 ~dADiVIi~ag~p~k-~-g-~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tN 159 (390)
...|++|..+|.... + . .+.. ..+..|..-. +...+.+.+. ..+.|++++-
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS 145 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIAS 145 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence 368999999986421 1 1 1222 2344554444 3333434332 3456666643
No 237
>PRK05717 oxidoreductase; Validated
Probab=95.83 E-value=0.035 Score=52.27 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--HHHHHHhcccCCCeEEEEeC-CCCh---hhh------
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQL---ENA------ 106 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g~a~DL~~~~~~~~v~~~~~-t~dl---~~a------ 106 (390)
-+.++|.|+||+|++|..++..|...+. ++++.|.+... ....++. ..+..+.. -+|. .++
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALG-----ENAWFIAMDVADEAQVAAGVAEVLG 80 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999988875 89999987521 1222221 12222211 1221 111
Q ss_pred -hCCCcEEEEcCCCCCCC-----CCCH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEec
Q 016424 107 -LTGMDLVIIPAGVPRKP-----GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLIS 158 (390)
Q Consensus 107 -l~dADiVIi~ag~p~k~-----g~~r---~~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~t 158 (390)
+...|+||..+|..... ..+. ...+..|..-...+.+.+..+ ...+.+|++|
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~s 143 (255)
T PRK05717 81 QFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLA 143 (255)
T ss_pred HhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 23479999999865321 1122 234667766666666666543 2345666665
No 238
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.83 E-value=0.055 Score=49.03 Aligned_cols=96 Identities=25% Similarity=0.294 Sum_probs=62.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.-..++|.|||. |.||+.++..+...+. +++.||....... ...+ ..++. .++++.++.||+|++..
T Consensus 33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~----~~~~~----~~l~ell~~aDiv~~~~ 99 (178)
T PF02826_consen 33 ELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADE----FGVEY----VSLDELLAQADIVSLHL 99 (178)
T ss_dssp -STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHH----TTEEE----SSHHHHHHH-SEEEE-S
T ss_pred ccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccc----cccee----eehhhhcchhhhhhhhh
Confidence 445679999999 9999999999997777 9999999863222 1111 12222 36889999999999985
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424 118 G-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160 (390)
Q Consensus 118 g-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP 160 (390)
. .|.-.++-- .+.+....|++++||++--
T Consensus 100 plt~~T~~li~--------------~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 100 PLTPETRGLIN--------------AEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp SSSTTTTTSBS--------------HHHHHTSTTTEEEEESSSG
T ss_pred ccccccceeee--------------eeeeeccccceEEEeccch
Confidence 3 343334311 1233445578899998744
No 239
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.81 E-value=0.14 Score=47.95 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------ 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------ 108 (390)
.++|.|+||+|++|..++..|...+. ++++++.+. ......++.... .++..+.+ -+| +.++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999988875 899999876 233344444322 23333321 122 223333
Q ss_pred -CCcEEEEcCCCC
Q 016424 109 -GMDLVIIPAGVP 120 (390)
Q Consensus 109 -dADiVIi~ag~p 120 (390)
.-|+||..+|..
T Consensus 83 g~id~li~~ag~~ 95 (253)
T PRK06172 83 GRLDYAFNNAGIE 95 (253)
T ss_pred CCCCEEEECCCCC
Confidence 349999998864
No 240
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.81 E-value=0.15 Score=48.23 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh---hh-------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---NA------- 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~---~a------- 106 (390)
+.+++.|+||+|++|..++..|...+. ++++.|.+. ......++... ..++..+.. -++.. ++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999988876 899999976 23333444322 123333221 12321 11
Q ss_pred hCCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 016424 107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN 159 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~tN 159 (390)
+...|+||-.+|..... ..+. ...+..|..-...+.+.. .+..+.+.+++++-
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS 147 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS 147 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 23679999998853221 1222 233455554444444444 33455566776654
No 241
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.80 E-value=0.2 Score=46.83 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC--C-CC----------h
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG--Q-PQ----------L 103 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~--t-~d----------l 103 (390)
.+.++|.|+|++|++|..++..|+..+. +|+++|.+. ......++.+... .+++.+.. + .+ +
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHH
Confidence 4567999999999999999999988775 899999976 3344455554321 22222211 0 01 1
Q ss_pred hhhhCCCcEEEEcCCCCCC--C--CCCHH---HHHHHHHHHHHHHHHHHHH---hCCCcEEEEecC
Q 016424 104 ENALTGMDLVIIPAGVPRK--P--GMTRD---DLFNINAGIVRTLCEGIAK---CCPNATVNLISN 159 (390)
Q Consensus 104 ~~al~dADiVIi~ag~p~k--~--g~~r~---~l~~~N~~ii~~ia~~I~~---~~p~a~iiv~tN 159 (390)
.+.+...|+||..+|.... + ..+.. ..+..|..-...+.+.+.. ..+.+.+++++.
T Consensus 87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss 152 (247)
T PRK08945 87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS 152 (247)
T ss_pred HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 2333467999999886322 2 22232 3355665544444444332 234556666654
No 242
>PRK06924 short chain dehydrogenase; Provisional
Probab=95.79 E-value=0.19 Score=46.92 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
|++|.|+||+|++|+.++..|+..+. +|++.+.+.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 35799999999999999999998886 889999865
No 243
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.79 E-value=0.2 Score=47.06 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChhhhh---------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLENAL--------- 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~~al--------- 107 (390)
+.++|.|+||+|++|+.++..|...+. ++++.|.+. ......++... ..++..+.+ -+|. +++
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~-~~i~~~~~~~~~ 85 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADE-ADIERLAEETLE 85 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCH-HHHHHHHHHHHH
Confidence 346899999999999999999988876 899999875 22222233221 123333222 1232 222
Q ss_pred --CCCcEEEEcCCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 016424 108 --TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC----CPNATVNLISN 159 (390)
Q Consensus 108 --~dADiVIi~ag~p~k~g---~~---r~~l~~~N~~ii~~ia~~I~~~----~p~a~iiv~tN 159 (390)
...|+||..+|...... .+ -...+..|+.-...+.+.+..+ .+.+.+++++.
T Consensus 86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 35799999988632211 11 1234567777777777766554 24456666654
No 244
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.79 E-value=0.069 Score=58.79 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=60.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
.||+|||+ |.+|..++..+...+...+|..||.++. ...+.++. .... .++++.++++++|+||++...
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g-----~~~~---~~~~~~~~~~~aDvVilavp~- 73 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLG-----VIDR---GEEDLAEAVSGADVIVLAVPV- 73 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCC-----CCCc---ccCCHHHHhcCCCEEEECCCH-
Confidence 68999999 9999999999998775457999999862 22222211 1111 134667889999999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 158 (390)
Q Consensus 121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t 158 (390)
..+.++.+.+..+. ++.+|..++
T Consensus 74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 74 ---------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 12445555555553 555555443
No 245
>PRK08643 acetoin reductase; Validated
Probab=95.79 E-value=0.21 Score=46.79 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=65.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~ 108 (390)
+++.|+||+|++|..++..|+..+. ++++.|.+. ......++.+.. .++..+.. -+| +.++ +.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4788999999999999999998876 899999876 233344444321 22222221 112 1122 23
Q ss_pred CCcEEEEcCCCCC-CCC--CCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424 109 GMDLVIIPAGVPR-KPG--MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 109 dADiVIi~ag~p~-k~g--~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN 159 (390)
+.|+||..+|... .+- .+.. ..+..|+.- .+.+.+.+.+..+++.+++++-
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS 139 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATS 139 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 6799999998642 221 1111 234455543 3333334433344567777763
No 246
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.77 E-value=0.075 Score=54.16 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=66.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH--H--HHHHHhcccCCCeEEEEeC----CCChhhhhC-
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTGAVVRGFLG----QPQLENALT- 108 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~--g--~a~DL~~~~~~~~v~~~~~----t~dl~~al~- 108 (390)
..+++||.|+||+|.+|+.++..|...+. ++++++.+... . ...++... ...++.+.+ ..++.++++
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~ 132 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKE--LPGAEVVFGDVTDADSLRKVLFS 132 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhh--cCCceEEEeeCCCHHHHHHHHHH
Confidence 34568999999999999999999988876 88888886511 0 11111111 112222221 123455566
Q ss_pred ---CCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 109 ---GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 109 ---dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
++|+||.+++.+.... .+....|......+.+.+.+..-. .++++|
T Consensus 133 ~~~~~D~Vi~~aa~~~~~~---~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS 181 (390)
T PLN02657 133 EGDPVDVVVSCLASRTGGV---KDSWKIDYQATKNSLDAGREVGAK-HFVLLS 181 (390)
T ss_pred hCCCCcEEEECCccCCCCC---ccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 5899998876432111 122345666666777777666533 344444
No 247
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.76 E-value=0.16 Score=47.63 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l 107 (390)
.+++.|+||+|++|..++..|...+. ++++.|.+. ......++.+.. .++..+.. -+| +.+. +
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999988876 899999876 233444454322 12222211 112 1111 2
Q ss_pred CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
...|+||..+|.... + ..+.. ..+..|..-...+.+.+..+ ...+.++++|
T Consensus 85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~is 144 (254)
T PRK08085 85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINIC 144 (254)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEc
Confidence 357999999986321 1 12222 34556655444444444433 2345666665
No 248
>PLN02253 xanthoxin dehydrogenase
Probab=95.75 E-value=0.31 Score=46.46 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------ 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------ 108 (390)
.+++.|+||+|++|..++..|+..+. +++++|.+. ......++.. ..++..+.. -+| ..++++
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999998876 899999875 2223333321 123333221 122 223333
Q ss_pred -CCcEEEEcCCCCC
Q 016424 109 -GMDLVIIPAGVPR 121 (390)
Q Consensus 109 -dADiVIi~ag~p~ 121 (390)
..|++|..+|...
T Consensus 93 g~id~li~~Ag~~~ 106 (280)
T PLN02253 93 GTLDIMVNNAGLTG 106 (280)
T ss_pred CCCCEEEECCCcCC
Confidence 5899999998753
No 249
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.75 E-value=0.035 Score=56.37 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=49.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLG 99 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~ 99 (390)
..||.|+|+ |++|+.++..|+..+ +.+|.|+|-+. +...+..+.+......+..+..
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 348999999 999999999999888 46899999982 1112223333332234444321
Q ss_pred C---CChhhhhCCCcEEEEcC
Q 016424 100 Q---PQLENALTGMDLVIIPA 117 (390)
Q Consensus 100 t---~dl~~al~dADiVIi~a 117 (390)
. .++.+.++++|+||.+.
T Consensus 213 ~~~~~~~~~~~~~~D~Vv~~~ 233 (376)
T PRK08762 213 RVTSDNVEALLQDVDVVVDGA 233 (376)
T ss_pred cCChHHHHHHHhCCCEEEECC
Confidence 1 12334578999999875
No 250
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.057 Score=50.20 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=30.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
||+.|+||+|++|+.++..+...+. ++++.|.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999988876 899999875
No 251
>PRK07904 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.17 Score=47.97 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh----
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL---- 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al---- 107 (390)
+.++|.|.||+|++|..++..++..+ . .|++.+.++ +...+.++.... ..+++.+.. -+| ..+.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence 45689999999999999999888774 4 889999875 233445554322 113333221 112 11112
Q ss_pred --CCCcEEEEcCCCCCCCCC---CH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424 108 --TGMDLVIIPAGVPRKPGM---TR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 108 --~dADiVIi~ag~p~k~g~---~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t 158 (390)
.+.|++|..+|....... +. .+.+..|..- .+.+.+.+.+... +.++++|
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~is 145 (253)
T PRK07904 84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMS 145 (253)
T ss_pred hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence 379999998887532211 11 1235556543 3445556555443 4455554
No 252
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.72 E-value=0.046 Score=53.61 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-...+|+|+|+ |.+|..++..|...+. ++.++|.+... . ..+.... .+.+. ..++.+.++++|+||.+..
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~-~-~~~~~~g----~~~~~-~~~l~~~l~~aDiVint~P 218 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSAD-L-ARITEMG----LIPFP-LNKLEEKVAEIDIVINTIP 218 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHH-H-HHHHHCC----Ceeec-HHHHHHHhccCCEEEECCC
Confidence 34569999999 9999999999988775 89999987621 1 1111111 11111 2356788999999999862
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcc
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNS 163 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~ 163 (390)
.+ ++ + ...+....|+++++.+ ++|-.+
T Consensus 219 ~~---------ii--~-------~~~l~~~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 219 AL---------VL--T-------ADVLSKLPKHAVIIDLASKPGGT 246 (287)
T ss_pred hH---------Hh--C-------HHHHhcCCCCeEEEEeCcCCCCC
Confidence 21 11 1 1223444578888877 688654
No 253
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.72 E-value=0.053 Score=52.46 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
+|||+|||. |.+|..++..+...+ .+.-+.++|.+.. .+.++.+. . ....+ +|+++.+.++|+|+++++.
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~--~a~~~a~~-~--~~~~~---~~~~ell~~~DvVvi~a~~ 71 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLE--KAENLASK-T--GAKAC---LSIDELVEDVDLVVECASV 71 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHH--HHHHHHHh-c--CCeeE---CCHHHHhcCCCEEEEcCCh
Confidence 479999999 999999998887654 2334668998752 12223221 1 12232 4666767999999999731
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 152 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a 152 (390)
....+++..+.+...+.
T Consensus 72 ----------------~~~~~~~~~al~~Gk~V 88 (265)
T PRK13304 72 ----------------NAVEEVVPKSLENGKDV 88 (265)
T ss_pred ----------------HHHHHHHHHHHHcCCCE
Confidence 12456666666666554
No 254
>PRK07024 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.18 Score=47.54 Aligned_cols=76 Identities=30% Similarity=0.291 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------ 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------ 108 (390)
+++|.|+||+|++|..++..|+..+. +|++.|.+. +.....++... .++..+.. -+| ..++++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 76 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAH 76 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35899999999999999999998876 899999875 22222333211 13333322 122 222222
Q ss_pred -CCcEEEEcCCCCC
Q 016424 109 -GMDLVIIPAGVPR 121 (390)
Q Consensus 109 -dADiVIi~ag~p~ 121 (390)
..|++|..+|...
T Consensus 77 g~id~lv~~ag~~~ 90 (257)
T PRK07024 77 GLPDVVIANAGISV 90 (257)
T ss_pred CCCCEEEECCCcCC
Confidence 2699999988643
No 255
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.71 E-value=0.052 Score=52.92 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=63.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcEEEEcCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV 119 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADiVIi~ag~ 119 (390)
|||.|+||+|.+|+.++..|...+ +++.+|.... .. ..+++- ...+.++++ +.|+||-+++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~---------~~Dl~d---~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DY---------CGDFSN---PEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cc---------cCCCCC---HHHHHHHHHhcCCCEEEECCcc
Confidence 689999999999999999888776 4677776421 00 011111 112345555 58999998875
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 120 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 120 p~k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
.... ..........|+.....+++.+.+.. ..++.+|
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S 103 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS 103 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence 3321 12233445678888889999888765 3555444
No 256
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.69 E-value=0.078 Score=53.10 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
-+.+||+|||. |.+|.+++..|...+. +++.++.+.... .+..... . +.. .+..++++.||+|+++.
T Consensus 15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s--~~~A~~~-G--~~~----~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKS--WKKAEAD-G--FEV----LTVAEAAKWADVIMILL 81 (330)
T ss_pred hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhh--HHHHHHC-C--Cee----CCHHHHHhcCCEEEEcC
Confidence 34579999999 9999999999998887 788777754111 1111111 1 121 25678999999999986
No 257
>PRK07832 short chain dehydrogenase; Provisional
Probab=95.68 E-value=0.27 Score=46.82 Aligned_cols=116 Identities=20% Similarity=0.187 Sum_probs=65.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-CCCCh----------hhhhC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~t~dl----------~~al~ 108 (390)
+++.|+||+|++|..++..++..+. ++++++.+. ......++...... .+..+. .-+|. .+.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHG 77 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 3789999999999999999988875 789999876 33334444332211 111111 11121 12234
Q ss_pred CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 016424 109 GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEG----IAKCCPNATVNLISNP 160 (390)
Q Consensus 109 dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~tNP 160 (390)
..|+||..+|..... ..+.. ..+..|..-...+.+. +.+....+.+++++-.
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~ 139 (272)
T PRK07832 78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSA 139 (272)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 689999999864321 12222 2355565544444444 3333334667666543
No 258
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=95.68 E-value=0.046 Score=50.26 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=69.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccC-CCeEEEEeCCCChhhhhCCC--cEEEEcCCC
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDT-GAVVRGFLGQPQLENALTGM--DLVIIPAGV 119 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~dA--DiVIi~ag~ 119 (390)
|.|+||+|.+|+.++..|...+. +++-+.... ......+...... ..++. ...++.+.+++. |.||.+++.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~dl~---~~~~~~~~~~~~~~d~vi~~a~~ 75 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNVEFVIGDLT---DKEQLEKLLEKANIDVVIHLAAF 75 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTEEEEESETT---SHHHHHHHHHHHTESEEEEEBSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceEEEEEeecc---ccccccccccccCceEEEEeecc
Confidence 78999999999999999998886 444344333 2222221111100 01111 113456677777 999999987
Q ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 120 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 120 p~k--~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
+.- ....-.+.+..|+...+.+.+.+.+... ..++..+
T Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~s 115 (236)
T PF01370_consen 76 SSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLS 115 (236)
T ss_dssp SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccc
Confidence 531 1134557788999999999999999887 4455454
No 259
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.68 E-value=0.056 Score=53.22 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
....||.|||+ |.+|..++..|...+. ++..+|.+. ....+.++ . ..... ..++.+.++++|+||.+.
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~~~---~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSPFH---LSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ceeec---HHHHHHHhCCCCEEEECC
Confidence 35679999999 9999999999988775 899999985 22222222 1 12111 235678899999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCc
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVN 162 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd 162 (390)
..+ + +-+ ..+....|+++++.+ ++|-+
T Consensus 219 p~~----~-----------i~~---~~l~~~~~g~vIIDla~~pgg 246 (296)
T PRK08306 219 PAL----V-----------LTK---EVLSKMPPEALIIDLASKPGG 246 (296)
T ss_pred Chh----h-----------hhH---HHHHcCCCCcEEEEEccCCCC
Confidence 211 0 111 123334578888755 67755
No 260
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.66 E-value=0.044 Score=53.77 Aligned_cols=63 Identities=17% Similarity=0.347 Sum_probs=46.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|||+|||. |.+|++++..|...+. ++..||++.. +.++... . .... .+..++.++||+||++.
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~--g--~~~~---~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSL--G--AVSV---ETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHc--C--Ceec---CCHHHHHhcCCEEEEeC
Confidence 58999999 9999999999998886 8889998751 2233221 1 1221 24567789999999985
No 261
>PLN03139 formate dehydrogenase; Provisional
Probab=95.64 E-value=0.07 Score=54.55 Aligned_cols=94 Identities=24% Similarity=0.266 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
-..++|+|||. |.||+.++..+...+. +|+.||.... ..... +. .+.. ..++++.+++||+|++..
T Consensus 197 L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~~---~~----g~~~---~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 197 LEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELEK---ET----GAKF---EEDLDAMLPKCDVVVINT 263 (386)
T ss_pred CCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhHh---hc----Ccee---cCCHHHHHhhCCEEEEeC
Confidence 45679999999 9999999999887665 8899998642 11111 11 1222 236889999999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
|.. ..+-.++- .+.+....|++++||.+
T Consensus 264 --Plt---------~~T~~li~--~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 264 --PLT---------EKTRGMFN--KERIAKMKKGVLIVNNA 291 (386)
T ss_pred --CCC---------HHHHHHhC--HHHHhhCCCCeEEEECC
Confidence 221 12222221 24555567899999886
No 262
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.17 Score=48.60 Aligned_cols=115 Identities=19% Similarity=0.178 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l 107 (390)
++.+.|.||+|++|..++..|+..+. +|++.|.+. +.....++... ..++..+.. -+| +.++ +
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34688999999999999999998886 799999886 33334444322 123333221 122 2222 2
Q ss_pred CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 016424 108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVR----TLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~----~ia~~I~~~~p~a~iiv~tN 159 (390)
...|+||..+|..... ..+.. ..+..|..-.. .+.+.+.+....+.+++++.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3469999999864321 12222 23455554444 44444444443456666653
No 263
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.62 E-value=0.078 Score=49.88 Aligned_cols=112 Identities=20% Similarity=0.265 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC----CCChhhhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG----QPQLENAL------- 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~----t~dl~~al------- 107 (390)
.++|.|+||+|++|..++..|+..+. ++++.|.+.. .....++.. .+..+.. ..+..+++
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGP-----AAIAVSLDVTRQDSIDRIVAAAVERF 78 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999998886 8999998862 233333321 1222111 11222222
Q ss_pred CCCcEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecC
Q 016424 108 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKC----CPNATVNLISN 159 (390)
Q Consensus 108 ~dADiVIi~ag~p~k-~--g~~r---~~l~~~N~~ii~~ia~~I~~~----~p~a~iiv~tN 159 (390)
...|++|..+|.... + ..+. ...+..|..-...+.+.+..+ ..++.+++++-
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 140 (257)
T PRK07067 79 GGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS 140 (257)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 368999999886421 1 1122 233556655555555554332 34466666654
No 264
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.61 E-value=0.42 Score=46.01 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=79.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
++||+|+|++|.+|+.++..+...+-+.-+.++|.+...... . . ...+.. .+|+++.++++|+||... .|
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~--~---~-~~~i~~---~~dl~~ll~~~DvVid~t-~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG--Q---G-ALGVAI---TDDLEAVLADADVLIDFT-TP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc--c---C-CCCccc---cCCHHHhccCCCEEEECC-CH
Confidence 479999998899999999887766544445568887521110 1 1 122332 357888888999999654 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec-ccccH---HHHHH
Q 016424 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV---VRANT 196 (390)
Q Consensus 121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~-t~Lds---~R~~~ 196 (390)
....+++....+++.+.+ +- |.+....-+ +.+..+.. ...-++.. ..+.. .++-.
T Consensus 71 ---------------~~~~~~~~~al~~G~~vv--ig--ttG~s~~~~-~~l~~aa~-~~~v~~s~n~s~g~~~~~~l~~ 129 (257)
T PRK00048 71 ---------------EATLENLEFALEHGKPLV--IG--TTGFTEEQL-AELEEAAK-KIPVVIAPNFSIGVNLLMKLAE 129 (257)
T ss_pred ---------------HHHHHHHHHHHHcCCCEE--EE--CCCCCHHHH-HHHHHHhc-CCCEEEECcchHHHHHHHHHHH
Confidence 123566666666654433 22 333222211 12222221 11122222 22222 34455
Q ss_pred HHHHHhCCCCCCCceEEeecccC
Q 016424 197 FVAEVLGLDPRDVDVPVVGGHAG 219 (390)
Q Consensus 197 ~la~~l~v~p~~V~~~ViG~Hg~ 219 (390)
.+++.|+ + .++-++--|+.
T Consensus 130 ~aa~~l~--~--~d~ei~E~HH~ 148 (257)
T PRK00048 130 KAAKYLG--D--YDIEIIEAHHR 148 (257)
T ss_pred HHHHhcC--C--CCEEEEEccCC
Confidence 5556665 2 67888998986
No 265
>PRK05865 hypothetical protein; Provisional
Probab=95.61 E-value=0.07 Score=59.73 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=67.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE-eCCCChhhhhCCCcEEEEcCCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~dADiVIi~ag~p 120 (390)
|||.|+||+|.+|+.++..|...+. +++++|.+.... +.. . ...+..- ....++.++++++|+||.+++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 6899999999999999999988876 889998764111 100 0 0111110 01234567789999999998753
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (390)
Q Consensus 121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv 161 (390)
. + ....|+.-...+.+.+.+.+.. .++++|.+.
T Consensus 73 ~-~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~ 105 (854)
T PRK05865 73 G-R------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH 105 (854)
T ss_pred c-c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence 2 1 3456777777777777766532 566666554
No 266
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.46 Score=44.56 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=65.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~ 108 (390)
+.+.|+||+|++|..++..+...+. .|++.|.+. ......++.... .++..+.. -+| ..++ +.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999998876 899999876 233444444321 23333321 122 1111 24
Q ss_pred CCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 016424 109 GMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGI----AKCCPNATVNLIS 158 (390)
Q Consensus 109 dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~t 158 (390)
..|+||..+|.... + ..+.. ..+..|..-...+.+.+ .+....+.++++|
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is 137 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV 137 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence 67999998875321 1 22332 23555554444444444 3334456777766
No 267
>PLN02928 oxidoreductase family protein
Probab=95.58 E-value=0.051 Score=54.75 Aligned_cols=105 Identities=23% Similarity=0.153 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHh--cccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~--~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
-..++|.|||. |.||+.++..+...+. +|..||..........+. ...............++++.++.||+|++.
T Consensus 157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 44679999999 9999999999887776 899999863111111110 000000000000124788999999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
.. ..+ .|-.++- .+.+....|++++||++=
T Consensus 234 lP--lt~---------~T~~li~--~~~l~~Mk~ga~lINvaR 263 (347)
T PLN02928 234 CT--LTK---------ETAGIVN--DEFLSSMKKGALLVNIAR 263 (347)
T ss_pred CC--CCh---------HhhcccC--HHHHhcCCCCeEEEECCC
Confidence 52 111 1111221 345555678999999973
No 268
>PRK06181 short chain dehydrogenase; Provisional
Probab=95.58 E-value=0.19 Score=47.32 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=66.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh-------C
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------T 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al-------~ 108 (390)
++|.|+||+|++|..++..|+..+. ++++.|.+. ......++.... ..+..+.+ -+|. .+++ .
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999998888875 899999876 233334444332 23333322 1222 1222 3
Q ss_pred CCcEEEEcCCCCCCCC---C-CHH---HHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 016424 109 GMDLVIIPAGVPRKPG---M-TRD---DLFNINAGIVRTLCEGIAKCC--PNATVNLISNP 160 (390)
Q Consensus 109 dADiVIi~ag~p~k~g---~-~r~---~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~tNP 160 (390)
+.|+||..+|...... . +.. ..+..|..-...+.+.+..+. ..+.+++++-.
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~ 138 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL 138 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 6799999988643221 1 222 235566655555555554322 23556666543
No 269
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.58 E-value=0.058 Score=48.48 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=42.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.-+.+||+|||.|.-||.+++.+|...+. .+.+.+.. |.++++-++.||+||.+.
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~ 87 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAV 87 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-S
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeee
Confidence 35667999999988899999999988753 44444432 347788899999999999
Q ss_pred CCCC
Q 016424 118 GVPR 121 (390)
Q Consensus 118 g~p~ 121 (390)
|.|.
T Consensus 88 G~~~ 91 (160)
T PF02882_consen 88 GKPN 91 (160)
T ss_dssp SSTT
T ss_pred cccc
Confidence 8774
No 270
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.57 E-value=0.068 Score=49.48 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
..||.|+|+ |++|+.++..|+..+ +.+|+++|-+.
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~G-Vg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSG-IGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcC-CCEEEEEECCc
Confidence 359999999 999999999999988 47899999874
No 271
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.27 Score=45.73 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh---h-------h
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---N-------A 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~---~-------a 106 (390)
+.+++.|+||+|++|..++..|...+. +++++|.++ ......++.+.. ..+..+.. -+|.. + .
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999988875 899999876 223333343321 12222211 12221 1 1
Q ss_pred hCCCcEEEEcCCCCC----CC--CCCHH---HHHHHHHHHHHHHHHHHHHhC---CCcEEEEec
Q 016424 107 LTGMDLVIIPAGVPR----KP--GMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLIS 158 (390)
Q Consensus 107 l~dADiVIi~ag~p~----k~--g~~r~---~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~t 158 (390)
+...|+||.++|... .+ ..+.. ..+..|..-...+.+.+..+. +.+.+++++
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 144 (250)
T PRK07774 81 FGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS 144 (250)
T ss_pred hCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence 236899999998632 11 12222 234566655555555555432 245666655
No 272
>PRK09242 tropinone reductase; Provisional
Probab=95.54 E-value=0.37 Score=45.28 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC----------hhhh
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ----------LENA 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d----------l~~a 106 (390)
+.+++.|+||+|++|..++..+...+. +|++.+.+. ......++.......++..+... ++ ..+.
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999998876 899999876 33344455433112233333211 11 1123
Q ss_pred hCCCcEEEEcCCC
Q 016424 107 LTGMDLVIIPAGV 119 (390)
Q Consensus 107 l~dADiVIi~ag~ 119 (390)
+...|+||..+|.
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 4567999999986
No 273
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.53 E-value=0.069 Score=53.08 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
....++|||+ |..+...+..+..-..+.++.+||.+. +...+..+.+. ...+... ++.++++++||+|+.+.
T Consensus 127 d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT 200 (315)
T PRK06823 127 HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence 3569999999 988888887776655679999999987 34444444432 2345543 46789999999999864
No 274
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.53 E-value=0.01 Score=60.02 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=46.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEe--C--CCChhhhhCCCcEEEEcC
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL--G--QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~--~--t~dl~~al~dADiVIi~a 117 (390)
|.|+|+ |.+|+.++..|...+...++++.|.+.. ...+.++ . ..+++... . ..++.+.++++|+||.++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~---~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL---L-GDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-----T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc---c-ccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999 9999999999999887669999999862 2333322 1 12222221 1 123667899999999998
Q ss_pred CCC
Q 016424 118 GVP 120 (390)
Q Consensus 118 g~p 120 (390)
|..
T Consensus 76 gp~ 78 (386)
T PF03435_consen 76 GPF 78 (386)
T ss_dssp SGG
T ss_pred ccc
Confidence 644
No 275
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.11 Score=49.59 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------CC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------TG 109 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~d 109 (390)
+++|.|+||+|++|+.++..|+..+. +|++.|.+... ..++.... ..++..+.. -+| +.+++ ..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~--~~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAA--RADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHH--HHHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45799999999999999999988876 89999987521 11222211 112222211 122 22222 25
Q ss_pred CcEEEEcCCCCCC---CCCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 110 MDLVIIPAGVPRK---PGMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 110 ADiVIi~ag~p~k---~g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
.|+||..+|.... ...+.. ..+..|+.-...+.+.+..+ ...+.++++|
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iS 136 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNIT 136 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 7999999986421 122332 33566766555555554332 2234566665
No 276
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.52 E-value=0.095 Score=54.03 Aligned_cols=125 Identities=25% Similarity=0.317 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH---HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g---~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
+.++|.|+|+ |.+|..++..|+..+. +++++|.+.... ...+|... .++.+.+. ...+...++|+||.+
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~ 75 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVS 75 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEEC
Confidence 3569999999 8899999999999887 899999975222 22333221 23333322 112446789999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCcccHHHHHHHHHHh
Q 016424 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~~t~i~ae~~~~~ 175 (390)
+|.+...- .....-..+++++...+...... + ..+|-+| |==.+++.+++.++...
T Consensus 76 ~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~ 133 (450)
T PRK14106 76 PGVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNA 133 (450)
T ss_pred CCCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 98753211 11112234666666655544432 2 3455554 44446667777777653
No 277
>PRK06196 oxidoreductase; Provisional
Probab=95.52 E-value=0.1 Score=51.13 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCChhhh-------hCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENA-------LTGM 110 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~dl~~a-------l~dA 110 (390)
.++|.|.||+|++|..++..|+..+. +|++.+.+. ......++..... ..++.- ..+..++ +...
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d---~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLDLAD---LESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC---HHHHHHHHHHHHhcCCCC
Confidence 45899999999999999999998886 899999875 2222333322110 011110 0111111 2468
Q ss_pred cEEEEcCCCCCCCCC----CHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424 111 DLVIIPAGVPRKPGM----TRDDLFNINAG----IVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 111 DiVIi~ag~p~k~g~----~r~~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t 158 (390)
|+||..+|....+.. .-...+..|.. +.+.+.+.+.+.. .+.|+++|
T Consensus 101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS 155 (315)
T PRK06196 101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALS 155 (315)
T ss_pred CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEEC
Confidence 999999986432211 11233444543 3555555555433 45666665
No 278
>PLN02686 cinnamoyl-CoA reductase
Probab=95.52 E-value=0.22 Score=50.23 Aligned_cols=109 Identities=10% Similarity=0.127 Sum_probs=66.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcc---c-CCCeEEEEeC----CCChhhhhC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM---D-TGAVVRGFLG----QPQLENALT 108 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~---~-~~~~v~~~~~----t~dl~~al~ 108 (390)
..++++|.|.||+|.+|+.++..|+..+. +++++..+. ......++... . ....+..+.+ ..++.++++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 45678999999999999999999998886 777655443 11111222110 0 0012333221 123567788
Q ss_pred CCcEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHh
Q 016424 109 GMDLVIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKC 148 (390)
Q Consensus 109 dADiVIi~ag~p~k~g~--~r~~l~~~N~~ii~~ia~~I~~~ 148 (390)
++|.|+-+++.....+. ....+...|+.-...+.+.+.+.
T Consensus 128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 99999987765322221 12344556777788888887765
No 279
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=95.52 E-value=0.48 Score=44.54 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------CC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------TG 109 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~d 109 (390)
.+.+.|+|++|++|..++..|+..+. +++++|.........++.... .++..+.. -+| ..+.+ ..
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45789999999999999999998876 788888765333333343221 22332221 122 22222 35
Q ss_pred CcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHH----HHHHHHHHhCCCcEEEEecC
Q 016424 110 MDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVR----TLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 110 ADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~----~ia~~I~~~~p~a~iiv~tN 159 (390)
.|++|..+|.... + ..+.. ..+..|..-.. .+.+.+.+..+.+.+++++.
T Consensus 86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 7999999987532 1 12222 33555554433 44444444445577776653
No 280
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.089 Score=49.51 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
.++|.|+||+|++|..++..++..+. +++++|.+.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~ 41 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP 41 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 46899999999999999999998876 899999876
No 281
>PRK05650 short chain dehydrogenase; Provisional
Probab=95.50 E-value=0.21 Score=47.43 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=64.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh-------C
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------T 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al-------~ 108 (390)
++|.|+||+|++|+.++..|...+. ++++.|.+. ......++.... .++..+.+ -+|. .+.+ .
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999998876 889999876 233334444322 22322221 1222 2222 3
Q ss_pred CCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424 109 GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 109 dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t 158 (390)
..|+||..+|..... ..+.. ..+..|..-. +.+.+.+.+.. .+.++++|
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vs 135 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIA 135 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEEC
Confidence 689999998864321 12222 2345564433 33444444433 34566555
No 282
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.50 E-value=0.11 Score=51.08 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=51.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLGQ 100 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~t 100 (390)
.||.|+|+ |++|..++..|+..+. ..|.|+|.+. +...+..|.......+++.+.+.
T Consensus 20 s~VLIvG~-gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 20 SNVLISGL-GGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 49999999 9999999999999884 6899999874 01112223333334566666533
Q ss_pred CChhhhhCCCcEEEEcC
Q 016424 101 PQLENALTGMDLVIIPA 117 (390)
Q Consensus 101 ~dl~~al~dADiVIi~a 117 (390)
.+ ++-+.+.|+||.+.
T Consensus 98 ~~-~~~l~~fdvVV~~~ 113 (286)
T cd01491 98 LT-TDELLKFQVVVLTD 113 (286)
T ss_pred CC-HHHHhcCCEEEEec
Confidence 23 47799999998885
No 283
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.50 E-value=0.026 Score=53.43 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=61.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc------hHHH---HHHHhccc-CCC------eEEEEeCCCChhh
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGV---TADISHMD-TGA------VVRGFLGQPQLEN 105 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~------~~g~---a~DL~~~~-~~~------~v~~~~~t~dl~~ 105 (390)
-||+|+|. |-+|+..|.+++..+. ++.||||.+ +... ..+|.... .+. .+...++|+++.|
T Consensus 4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 38999997 9999999999999998 999999987 1222 22333211 111 2222345788889
Q ss_pred hhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCc
Q 016424 106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNA 152 (390)
Q Consensus 106 al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a 152 (390)
..++|=.|=-++ .+.+..-+.+-+++.+.. |..
T Consensus 81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t 114 (313)
T KOG2305|consen 81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT 114 (313)
T ss_pred HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce
Confidence 888874432222 344556677778887776 444
No 284
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.50 E-value=0.053 Score=56.83 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=62.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc-cCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~-~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~ 121 (390)
+|+|||. |.+|.+++..|+..+. +|++||++.. .+.++... .....+..+....++.++++++|+|+++.-
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~--~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~--- 72 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPE--KTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK--- 72 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHH--HHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence 4899999 9999999999999987 8999999762 22233322 101123332211233334567999998852
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC--CCccc
Q 016424 122 KPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN--PVNST 164 (390)
Q Consensus 122 k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tN--Pvd~~ 164 (390)
+|. .+.++...+..+ .++.+||..|| |.+..
T Consensus 73 -~~~-----------~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~ 106 (467)
T TIGR00873 73 -AGA-----------PVDAVINQLLPLLEKGDIIIDGGNSHYPDTE 106 (467)
T ss_pred -CcH-----------HHHHHHHHHHhhCCCCCEEEECCCcCHHHHH
Confidence 221 233444455554 46778888876 45444
No 285
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.49 E-value=0.057 Score=54.42 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=52.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
...++|||+ |..+...+..+..--.+.++.+||++. ....+.++.+. ..++.. .++.++++++||+|+.+.
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence 468999999 988877776555444579999999987 45566666652 234554 247899999999999865
No 286
>PRK07069 short chain dehydrogenase; Validated
Probab=95.49 E-value=0.35 Score=44.98 Aligned_cols=114 Identities=21% Similarity=0.254 Sum_probs=65.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC-c--hHHHHHHHhcccCCCeEEEEe-CCCC---hh-------hhhC
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NALT 108 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~-~--~~g~a~DL~~~~~~~~v~~~~-~t~d---l~-------~al~ 108 (390)
||.|+||+|++|..++..|...+. ++++.|.+ . ......++........+..+. .-+| +. +.+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 588999999999999999988876 89999987 3 233333443221111111111 1112 11 2234
Q ss_pred CCcEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424 109 GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 109 dADiVIi~ag~p~k~---g~~r---~~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
..|+||..+|..... ..+. ...+..|+. ..+.+.+.+.+.. .+.+++++.
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss 138 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISS 138 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecC
Confidence 679999999865321 1122 234556665 5666666666544 345665553
No 287
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.48 E-value=0.19 Score=49.16 Aligned_cols=121 Identities=18% Similarity=0.229 Sum_probs=80.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hh-------hhh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LE-------NAL 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~-------~al 107 (390)
++.|.|.|||.|||..+|+.++..|. .++|+.... ++-++.++.......++.....+ +| .+ .-+
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 45778889999999999999999886 778887765 34454666654321223332211 22 22 345
Q ss_pred CCCcEEEEcCCCCCCCCC-C---H---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 016424 108 TGMDLVIIPAGVPRKPGM-T---R---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTV 165 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g~-~---r---~~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t 165 (390)
-+.|+.|..||+.+ .+. + . ...+..| +..-+...+.+.+.+ ++-|++++...+-+.
T Consensus 90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~ 156 (282)
T KOG1205|consen 90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP 156 (282)
T ss_pred CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence 68999999999988 431 1 1 1234444 677778888888887 898888877665543
No 288
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.46 E-value=0.054 Score=51.18 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC--C---CChhhhh-CCCcE
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q---PQLENAL-TGMDL 112 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~--t---~dl~~al-~dADi 112 (390)
.+++||.|+||+|++|+.++..|..++. +|+++..+..... ..+.. ...++.+.+ + .++.+++ .++|+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~-~~~~~---~~~~~~~~~Dl~d~~~~l~~~~~~~~d~ 88 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAK-TSLPQ---DPSLQIVRADVTEGSDKLVEAIGDDSDA 88 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHH-Hhccc---CCceEEEEeeCCCCHHHHHHHhhcCCCE
Confidence 4568999999999999999999988875 7777765542111 11111 112222221 1 1344566 68999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 016424 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157 (390)
Q Consensus 113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~ 157 (390)
||..+|.....+.. .....|..-...+.+.+.+.... .++++
T Consensus 89 vi~~~g~~~~~~~~--~~~~~n~~~~~~ll~a~~~~~~~-~iV~i 130 (251)
T PLN00141 89 VICATGFRRSFDPF--APWKVDNFGTVNLVEACRKAGVT-RFILV 130 (251)
T ss_pred EEECCCCCcCCCCC--CceeeehHHHHHHHHHHHHcCCC-EEEEE
Confidence 99988754321110 11122333345555555554433 34444
No 289
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.46 E-value=0.033 Score=51.56 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=70.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
-..++|+|||.|.-||.+++.+|.+.+. .+.++|++. .......+.|..+ ..+-. +.++.+.++.||+||.+
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~~--~~~l~~~~~~ADIVIsA 133 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTDE--EAMTLDCLSQSDVVITG 133 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccch--hhHHHHHhhhCCEEEEc
Confidence 4567999999988899999999998874 889999876 1100011112111 00000 11267889999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCceeec
Q 016424 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (390)
Q Consensus 117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kviG~ 186 (390)
.|.|.-. -..+ -..|++++|.++--.|.-- .+..+++.+.|. +|-
T Consensus 134 vG~~~~~--i~~d-----------------~ik~GavVIDVGi~~dvd~----~v~~~as~iTPv--VGp 178 (197)
T cd01079 134 VPSPNYK--VPTE-----------------LLKDGAICINFASIKNFEP----SVKEKASIYVPS--IGK 178 (197)
T ss_pred cCCCCCc--cCHH-----------------HcCCCcEEEEcCCCcCccH----hHHhhcCEeCCC--cCH
Confidence 9877520 0011 1247888887753333321 223455556664 777
No 290
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.46 E-value=0.3 Score=49.06 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=74.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCC-CcEEE
Q 016424 37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTG-MDLVI 114 (390)
Q Consensus 37 ~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~d-ADiVI 114 (390)
...+..+|+|+|+ |++|......++..+ .+++.+|+++. ...+.+|.-- .-+.. . ..|.-+++++ +|+||
T Consensus 163 ~~~pG~~V~I~G~-GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd---~~i~~-~-~~~~~~~~~~~~d~ii 234 (339)
T COG1064 163 NVKPGKWVAVVGA-GGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD---HVINS-S-DSDALEAVKEIADAII 234 (339)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc---EEEEc-C-CchhhHHhHhhCcEEE
Confidence 4556789999999 999998887777666 49999999873 4455555311 11111 1 1233344444 99999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-cc-c-HHHHHHHHHHhCCCCCCceeecc
Q 016424 115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NS-T-VPIAAEVFKKAGTYDPKKLLGVT 187 (390)
Q Consensus 115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv-d~-~-t~i~ae~~~~~s~~p~~kviG~t 187 (390)
.+++ +. .+-..+.-..+++.++.+.+|- .. . .+.. .++ +...+|.|+.
T Consensus 235 ~tv~-~~------------------~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~-~li-----~~~~~i~GS~ 285 (339)
T COG1064 235 DTVG-PA------------------TLEPSLKALRRGGTLVLVGLPGGGPIPLLPAF-LLI-----LKEISIVGSL 285 (339)
T ss_pred ECCC-hh------------------hHHHHHHHHhcCCEEEEECCCCCcccCCCCHH-Hhh-----hcCeEEEEEe
Confidence 9986 32 3344555567899999999994 33 2 1111 111 2346888884
No 291
>PRK09186 flagellin modification protein A; Provisional
Probab=95.45 E-value=0.2 Score=46.85 Aligned_cols=78 Identities=19% Similarity=0.115 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-C---CCChhhhhCC----
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-G---QPQLENALTG---- 109 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~---t~dl~~al~d---- 109 (390)
+.++|.|+||+|++|..++..|...+. ++++.+.+. ......++........+.... . .+++.++++.
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999998876 889998875 233444443211111222111 1 1223333332
Q ss_pred ---CcEEEEcCCC
Q 016424 110 ---MDLVIIPAGV 119 (390)
Q Consensus 110 ---ADiVIi~ag~ 119 (390)
.|+||..+|.
T Consensus 81 ~~~id~vi~~A~~ 93 (256)
T PRK09186 81 YGKIDGAVNCAYP 93 (256)
T ss_pred cCCccEEEECCcc
Confidence 6999998864
No 292
>PRK08328 hypothetical protein; Provisional
Probab=95.45 E-value=0.064 Score=50.86 Aligned_cols=35 Identities=34% Similarity=0.563 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
..||.|+|+ |++|+.++..|+..+ +.+|+|+|-|.
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~G-vg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAG-VGRILLIDEQT 61 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcCCc
Confidence 348999999 999999999999888 47899999875
No 293
>PRK09291 short chain dehydrogenase; Provisional
Probab=95.43 E-value=0.37 Score=45.02 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=47.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CC---ChhhhhC-CCcEEE
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENALT-GMDLVI 114 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~---dl~~al~-dADiVI 114 (390)
++|.|+||+|++|..++..|...+. ++++.+.+. ......+..... ..+....+ -+ ++..++. +.|+||
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 4799999999999999999998875 788888765 122222222111 12222211 12 2334444 899999
Q ss_pred EcCCCCC
Q 016424 115 IPAGVPR 121 (390)
Q Consensus 115 i~ag~p~ 121 (390)
..+|.+.
T Consensus 79 ~~ag~~~ 85 (257)
T PRK09291 79 NNAGIGE 85 (257)
T ss_pred ECCCcCC
Confidence 9998653
No 294
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.43 E-value=0.067 Score=54.04 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=49.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h----------------HHHHHHHhcccCCCeEEEEeCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------PGVTADISHMDTGAVVRGFLGQ 100 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~----------------~g~a~DL~~~~~~~~v~~~~~t 100 (390)
.||.|+|+ |++|+.++..|+..+ +.+|.|+|-|. + ...+..|........++.+...
T Consensus 29 ~~VlivG~-GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 29 AKVAVIGA-GGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred CeEEEECC-CHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 49999999 999999999999887 46899999874 0 1112233333323444443211
Q ss_pred ---CChhhhhCCCcEEEEcC
Q 016424 101 ---PQLENALTGMDLVIIPA 117 (390)
Q Consensus 101 ---~dl~~al~dADiVIi~a 117 (390)
.+..+-++++|+||.+.
T Consensus 107 i~~~~~~~~~~~~DvVvd~~ 126 (355)
T PRK05597 107 LTWSNALDELRDADVILDGS 126 (355)
T ss_pred cCHHHHHHHHhCCCEEEECC
Confidence 22235689999999986
No 295
>PRK07411 hypothetical protein; Validated
Probab=95.42 E-value=0.052 Score=55.54 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=50.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH----------------HHHHHHhcccCCCeEEEEeCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP----------------GVTADISHMDTGAVVRGFLGQ 100 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~----------------g~a~DL~~~~~~~~v~~~~~t 100 (390)
.||.|||+ |++|+.++..|+..+. .+|.|+|-|. +. ..+..|.+.....+++.+...
T Consensus 39 ~~VlivG~-GGlG~~va~~La~~Gv-g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 39 ASVLCIGT-GGLGSPLLLYLAAAGI-GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 49999999 9999999999999884 6899999874 11 112233333333455554321
Q ss_pred ---CChhhhhCCCcEEEEcC
Q 016424 101 ---PQLENALTGMDLVIIPA 117 (390)
Q Consensus 101 ---~dl~~al~dADiVIi~a 117 (390)
.+..+-++++|+||-+.
T Consensus 117 ~~~~~~~~~~~~~D~Vvd~~ 136 (390)
T PRK07411 117 LSSENALDILAPYDVVVDGT 136 (390)
T ss_pred cCHHhHHHHHhCCCEEEECC
Confidence 12335689999999985
No 296
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.40 E-value=0.0078 Score=51.47 Aligned_cols=73 Identities=25% Similarity=0.308 Sum_probs=47.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|||+|+|++|.+|+.++..+...+-..=+..+|.++......|+.+... ...+.. ++|+++.+..+|+||-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEcC
Confidence 6999999999999999999998664444567787752222233333221 234443 358889999999887754
No 297
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.40 E-value=0.18 Score=47.59 Aligned_cols=115 Identities=19% Similarity=0.273 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------CC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------TG 109 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~d 109 (390)
.+++.|+||+|++|..++..|+..+. ++++++.++.......+.... .++..+.. -+| ..+++ ..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 35789999999999999999998887 888888765333333333221 23332221 122 22222 35
Q ss_pred CcEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424 110 MDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 110 ADiVIi~ag~p~k~---g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
.|++|..+|..... ..+.. ..+..|.. +.+.+.+.+.+....+.|++++-
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS 143 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS 143 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 79999999864321 11222 23445543 34444555544443466776653
No 298
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.40 E-value=0.67 Score=43.29 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhh-------h
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LEN-------A 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~-------a 106 (390)
..++|.|+||+|+||..++..|...+. ++++.|.++ ......++.... .++..+.. -+| +.. .
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999998886 899999876 223333443211 12222221 122 111 1
Q ss_pred hCCCcEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 016424 107 LTGMDLVIIPAGVPR--KP--GMTRD---DLFNINAGIVRTLCEGIAKCC--PNATVNLISN 159 (390)
Q Consensus 107 l~dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~tN 159 (390)
+...|+||..+|... ++ ..+.. ..+..|+.-...+.+.+..+- ..+.+++++.
T Consensus 80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS 141 (258)
T PRK07890 80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS 141 (258)
T ss_pred cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 246899999998632 22 22222 335556555555555554431 1245666653
No 299
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.39 E-value=0.31 Score=45.10 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------ 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------ 107 (390)
.+++|.|+||+|++|..++..|..++. +|++++.+. ......++.... .++..+.+. +| +.+.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999988876 899999875 233333443321 234443321 12 22222
Q ss_pred -CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 016424 108 -TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGI----AKCCPNATVNLIS 158 (390)
Q Consensus 108 -~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~t 158 (390)
...|+||..+|.... + ..+.. ..+..|+.-...+.+.+ .+.. ...+++++
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~s 141 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTS 141 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEe
Confidence 368999999875431 1 22332 23455555444444444 3333 34555554
No 300
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=95.39 E-value=0.13 Score=49.76 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=64.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhh----hCCCcEEEEcCCC
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA----LTGMDLVIIPAGV 119 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~a----l~dADiVIi~ag~ 119 (390)
|.|+||+|.+|+.++..|...+. .++.++|..........+........+.. ...++.. +.+.|+||-.++.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence 57999999999999999988873 36788886542111111111100011111 1112221 2589999999986
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
+.....+.......|+.....+.+.+.+... .++.+|
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 5322233445667888888888888877653 355454
No 301
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.39 E-value=0.34 Score=45.04 Aligned_cols=76 Identities=25% Similarity=0.286 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL------ 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------ 107 (390)
+.+++.|+||+|++|+.++..|...+. ++++++.+.. .....++. ...++..+.+ -+| +.+++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999988875 8999998752 22233332 1223333322 122 22222
Q ss_pred -CCCcEEEEcCCCC
Q 016424 108 -TGMDLVIIPAGVP 120 (390)
Q Consensus 108 -~dADiVIi~ag~p 120 (390)
.+.|+||..+|..
T Consensus 79 ~~~id~vi~~ag~~ 92 (252)
T PRK06138 79 WGRLDVLVNNAGFG 92 (252)
T ss_pred cCCCCEEEECCCCC
Confidence 3789999998864
No 302
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.38 E-value=0.3 Score=45.31 Aligned_cols=116 Identities=18% Similarity=0.245 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------- 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------- 107 (390)
++++.|+||+|++|..++..|...+. +|++.+.+. ......++... ..++..+... ++ +.+++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999988886 899999876 22233444322 2344433321 12 22233
Q ss_pred CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 016424 108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 160 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNP 160 (390)
.+.|+||.++|...... .+.. ..+..|..-...+.+.+..+ ...+.+++++..
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~ 144 (239)
T PRK07666 83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISST 144 (239)
T ss_pred CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcch
Confidence 37899999988653221 1222 23455554333444444332 223445555543
No 303
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=95.38 E-value=0.12 Score=50.24 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=64.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCC-hhhhh-----CCCcEEEEcC
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVIIPA 117 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~d-l~~al-----~dADiVIi~a 117 (390)
|.|+||+|.+|+.++..|...+. ..+.++|..........+.+... .+... ..+ +.+++ .++|+||-+|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence 68999999999999999988773 35777887541100011111110 01110 011 12222 3689999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
+.+.............|+.....+.+.+.+..- .++..|
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S 115 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 115 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence 754433334445677888888888888877653 344443
No 304
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=95.38 E-value=0.21 Score=49.02 Aligned_cols=115 Identities=14% Similarity=0.039 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT----- 108 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~----- 108 (390)
++++|.|+||+|+||..++..|+..+. +|++.+.+. ......++... ..++..+.. -+| ..++++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 345799999999999999999988875 899999876 23333444321 123333221 122 222222
Q ss_pred --CCcEEEEcCCCCCC----CCCCHH---HHHHHHHHH----HHHHHHHHHHhCC-CcEEEEec
Q 016424 109 --GMDLVIIPAGVPRK----PGMTRD---DLFNINAGI----VRTLCEGIAKCCP-NATVNLIS 158 (390)
Q Consensus 109 --dADiVIi~ag~p~k----~g~~r~---~l~~~N~~i----i~~ia~~I~~~~p-~a~iiv~t 158 (390)
..|+||..+|.... +..+.. ..+..|..- .+.+.+.+.+... .+.|++++
T Consensus 81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 48999999985321 122322 335556543 4444444444432 34666654
No 305
>PRK06841 short chain dehydrogenase; Provisional
Probab=95.37 E-value=0.13 Score=48.13 Aligned_cols=113 Identities=19% Similarity=0.334 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l 107 (390)
+.++|.|+||+|++|+.++..|++.+. ++++.+.+. ......++.. ..+..+.. -+| +.+. +
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 87 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAF 87 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 356899999999999999999998886 799999876 2222333321 11212111 112 2222 2
Q ss_pred CCCcEEEEcCCCCCC-CC--CCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPRK-PG--MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~k-~g--~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
...|+||..+|.... +. .+.. ..+..|..-...+.+.+..+ ...+.++++|
T Consensus 88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 147 (255)
T PRK06841 88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLA 147 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 357999999886432 11 1222 23555655555555554433 2345566654
No 306
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.37 E-value=0.14 Score=53.35 Aligned_cols=125 Identities=16% Similarity=0.102 Sum_probs=72.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
..||.|||+ |.+|..++..|...+. ++.++|..+. ......|... .++.+.++. . +...++|+||++.
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~~-~-~~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGPG-P-TLPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECCC-c-cccCCCCEEEECC
Confidence 458999999 9999999988888886 8999997651 1122223322 234443322 1 2356799999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHhCCCcEEEEec--CCCcccHHHHHHHHHHh
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLC--EGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia--~~I~~~~p~a~iiv~t--NPvd~~t~i~ae~~~~~ 175 (390)
|++..... ....-..+++++.++- ..+.+...++.+|-+| |==.+++.+++.+++..
T Consensus 87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence 98632211 1111234556654432 2222111234455554 44446677777777664
No 307
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=95.36 E-value=0.22 Score=54.57 Aligned_cols=116 Identities=21% Similarity=0.248 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------ 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------ 108 (390)
.++|.|+||+|++|..++..|...+. +|++.|++. ......++........+..+.. -+| ..++++
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999998886 899999986 2333334432111112222211 122 223333
Q ss_pred -CCcEEEEcCCCCCC-C--CCCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEec
Q 016424 109 -GMDLVIIPAGVPRK-P--GMTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 109 -dADiVIi~ag~p~k-~--g~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
+.|+||..+|.... + ..+..+ .+..|+ .+.+...+.+.+....+.+++++
T Consensus 492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iS 552 (676)
T TIGR02632 492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIA 552 (676)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 68999999986432 2 112111 223333 23445555555544455555554
No 308
>PRK06198 short chain dehydrogenase; Provisional
Probab=95.35 E-value=0.51 Score=44.24 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA------- 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a------- 106 (390)
+.++|.|+||+|++|..++..|...+. ..|+++|.+. ......++... ...+..+.. -++. .+.
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGA-AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999988774 2399999875 22233334221 223332221 1221 122
Q ss_pred hCCCcEEEEcCCCCCCCC---CCHHH---HHHHHHHHHHH----HHHHHHHhCCCcEEEEec
Q 016424 107 LTGMDLVIIPAGVPRKPG---MTRDD---LFNINAGIVRT----LCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~g---~~r~~---l~~~N~~ii~~----ia~~I~~~~p~a~iiv~t 158 (390)
+.+.|+||..+|.+.... .+..+ .+..|+.-... ..+.+.+....+.+++++
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 143 (260)
T PRK06198 82 FGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIG 143 (260)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 236899999998754321 22322 24455543333 344444433345566665
No 309
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.35 E-value=0.1 Score=53.81 Aligned_cols=90 Identities=20% Similarity=0.168 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
....+|+|+|+ |.+|..++..+...+. +++.+|+++ ....+.++ ...+. +++++++++|+||.+.
T Consensus 200 l~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~-----G~~~~------~~~e~v~~aDVVI~at 265 (413)
T cd00401 200 IAGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME-----GYEVM------TMEEAVKEGDIFVTTT 265 (413)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc-----CCEEc------cHHHHHcCCCEEEECC
Confidence 45679999999 9999999999988886 788899987 22333322 11111 2357889999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHhCCCcEEEEecCC
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEG-IAKCCPNATVNLISNP 160 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~-I~~~~p~a~iiv~tNP 160 (390)
|.+. + +... +....+.+++++++.+
T Consensus 266 G~~~---------------~---i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 GNKD---------------I---ITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCHH---------------H---HHHHHHhcCCCCcEEEEeCCC
Confidence 6431 1 2222 4445688999999875
No 310
>PRK06182 short chain dehydrogenase; Validated
Probab=95.34 E-value=0.16 Score=48.26 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEE-EeCCCChhhhhC-------CCcE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT-------GMDL 112 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~-~~~t~dl~~al~-------dADi 112 (390)
+++|.|+||+|++|..++..|...+. +|++.+.+... ..++..... .-+.. .+...++.++++ +.|+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGV-HPLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 46899999999999999999988876 88998887511 112211110 01111 000112223333 7899
Q ss_pred EEEcCCCCCC-C--CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424 113 VIIPAGVPRK-P--GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 113 VIi~ag~p~k-~--g~~---r~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t 158 (390)
||..+|.... + ..+ ....+..|..- .+.+.+.+.+.. .+.+++++
T Consensus 78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~is 132 (273)
T PRK06182 78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR-SGRIINIS 132 (273)
T ss_pred EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC-CCEEEEEc
Confidence 9999986422 1 112 22334555533 455555555443 34566665
No 311
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.34 E-value=0.063 Score=56.59 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcc-cC-C-CeEEEEeCCCChhhhhCC---CcE
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DT-G-AVVRGFLGQPQLENALTG---MDL 112 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~-~~-~-~~v~~~~~t~dl~~al~d---ADi 112 (390)
...++|++||- |.+|++++..|+..+. +|+.||++..+ +.++.+. .. . ..+.. ..++.++++. +|+
T Consensus 4 ~~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~~~~~---a~s~~e~v~~l~~~dv 75 (493)
T PLN02350 4 AALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNLPLYG---FKDPEDFVLSIQKPRS 75 (493)
T ss_pred CCCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCccccc---CCCHHHHHhcCCCCCE
Confidence 45679999999 9999999999999887 99999997522 2223221 00 1 11222 2345565554 999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 016424 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP 160 (390)
Q Consensus 113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tNP 160 (390)
||++... -+.+.++...+..+ .|+.++|..||=
T Consensus 76 Ii~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 76 VIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred EEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 9998521 12333443444444 477777777654
No 312
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.32 E-value=0.15 Score=47.80 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------ 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------ 107 (390)
.+++|.|+||+|++|..++..+...+. +|+++|.+. ......++.... .++..+.+ -+| +.+++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999988876 899999976 333444454321 12222221 122 22222
Q ss_pred -CCCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 016424 108 -TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 161 (390)
Q Consensus 108 -~dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNPv 161 (390)
...|+||..+|.... + ..+.. ..+..|..-...+++.+.++ ...+.+++++...
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~ 149 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA 149 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence 245899999886332 1 12222 23556665555555444332 2346677776543
No 313
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.30 E-value=0.45 Score=43.71 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-CCh---hhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-PQL---ENA------ 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~a------ 106 (390)
++++|.|+||+|++|+.++..|.+++. ++.+..... ......++.... .+++.+.+. +|. .++
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG--RRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCcCCHHHHHHHHHHHHH
Confidence 356899999999999999999988886 555544433 122333333221 233333221 121 122
Q ss_pred -hCCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 016424 107 -LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLIS 158 (390)
Q Consensus 107 -l~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I----~~~~p~a~iiv~t 158 (390)
+.+.|+||.++|..... +++. .+.+..|+.-...+.+.+ .+.. ...+++++
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~~S 142 (249)
T PRK12825 81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVNIS 142 (249)
T ss_pred HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEC
Confidence 24679999998853221 2232 233555655555555554 3333 33455554
No 314
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=95.29 E-value=0.39 Score=44.39 Aligned_cols=114 Identities=21% Similarity=0.346 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA------- 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a------- 106 (390)
+.+++.|+||+|++|+.++..|...+. .+.+.+.+. +.....++. .++..+.. -+| ++++
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999988875 778887764 222222221 12222211 122 1111
Q ss_pred hCCCcEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 016424 107 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 160 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~---g~~---r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNP 160 (390)
+...|+||-.+|..... ..+ -...+..|..-...+++.+.+. .+.+.+++++..
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 140 (245)
T PRK12936 78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV 140 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Confidence 34589999998864321 111 1233455655544444444322 345566666643
No 315
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.29 E-value=0.064 Score=52.37 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
+..++.|||| |+.+..+++.|...+ +.+|.+++++. +...+.++... ..+.......++.+.+.++|+||.+.
T Consensus 124 ~~k~vlvlGa-GGaarai~~aL~~~G-~~~i~I~nRt~~ka~~La~~~~~~---~~~~~~~~~~~~~~~~~~~DiVInaT 198 (282)
T TIGR01809 124 AGFRGLVIGA-GGTSRAAVYALASLG-VTDITVINRNPDKLSRLVDLGVQV---GVITRLEGDSGGLAIEKAAEVLVSTV 198 (282)
T ss_pred CCceEEEEcC-cHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhhhc---CcceeccchhhhhhcccCCCEEEECC
Confidence 4568999999 999999999998877 46899999875 33344444321 12222211123446678999999975
Q ss_pred CC
Q 016424 118 GV 119 (390)
Q Consensus 118 g~ 119 (390)
..
T Consensus 199 p~ 200 (282)
T TIGR01809 199 PA 200 (282)
T ss_pred CC
Confidence 43
No 316
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.27 E-value=0.34 Score=44.75 Aligned_cols=103 Identities=21% Similarity=0.296 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-eCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhhhC-----
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENALT----- 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~al~----- 108 (390)
+++|.|+||+|++|..++..++..+. ++++. +.+. ......++... ...+..+... +|. .+.++
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999998888775 67777 8865 22233333331 2234433221 222 22222
Q ss_pred --CCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHH
Q 016424 109 --GMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAK 147 (390)
Q Consensus 109 --dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I~~ 147 (390)
..|+||..+|.... + ..+.. ..+..|..-...+.+.+..
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~ 127 (247)
T PRK05565 81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALP 127 (247)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 68999999886421 1 12222 3345566654444444443
No 317
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.27 E-value=0.072 Score=54.50 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=49.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hH----------------HHHHHHhcccCCCeEEEEeCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP----------------GVTADISHMDTGAVVRGFLGQ 100 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~----------------g~a~DL~~~~~~~~v~~~~~t 100 (390)
.||.|||+ |++|+.++..|+..+ +.+|.|+|-|. +. ..+..|.+.....++..+...
T Consensus 43 ~~VlviG~-GGlGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 120 (392)
T PRK07878 43 ARVLVIGA-GGLGSPTLLYLAAAG-VGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR 120 (392)
T ss_pred CCEEEECC-CHHHHHHHHHHHHcC-CCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEecc
Confidence 49999999 999999999999888 46899999874 11 011123333323445443211
Q ss_pred ---CChhhhhCCCcEEEEcC
Q 016424 101 ---PQLENALTGMDLVIIPA 117 (390)
Q Consensus 101 ---~dl~~al~dADiVIi~a 117 (390)
.+..+-++++|+||-+.
T Consensus 121 i~~~~~~~~~~~~D~Vvd~~ 140 (392)
T PRK07878 121 LDPSNAVELFSQYDLILDGT 140 (392)
T ss_pred CChhHHHHHHhcCCEEEECC
Confidence 22345689999999875
No 318
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.27 E-value=0.17 Score=52.69 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 40 AGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
+.+||.|+|. |+.|.+ ++..|...+. ++...|.+... ...+|... .++.+.+. + .+.+.++|+||++.|
T Consensus 6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~~-~-~~~~~~~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIGH-D-AENIKDADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCCC-C-HHHCCCCCEEEECCC
Confidence 4568999999 999999 6888988887 89999987632 22335432 23333222 3 366889999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~ 175 (390)
+|...-+ ......++++++-+.-- +.+..++..+|-+ ||==.++|.+++++++..
T Consensus 76 i~~~~~~-~~~a~~~~i~i~~~~e~-~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 76 IPDDNPE-LVAARELGIPVVRRAEM-LAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred CCCCCHH-HHHHHHCCCcEEeHHHH-HHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 9864221 11223445666544222 1122222234444 455557777777777665
No 319
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.27 E-value=0.055 Score=53.46 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=59.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.-+.++|+|||.+|-+|.+++..|...+. ++.+|+... .++.+..+.||+||.+.
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsav 210 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAV 210 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEec
Confidence 34568999999966999999999998876 888887541 25678899999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV 161 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPv 161 (390)
|.|..-.. ++ ..|++++|-++ |++
T Consensus 211 g~~~~v~~---~~-----------------ik~GaiVIDvgin~~ 235 (301)
T PRK14194 211 GRPRLIDA---DW-----------------LKPGAVVIDVGINRI 235 (301)
T ss_pred CChhcccH---hh-----------------ccCCcEEEEeccccc
Confidence 87642111 11 46889888886 553
No 320
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=95.26 E-value=0.44 Score=44.45 Aligned_cols=112 Identities=17% Similarity=0.282 Sum_probs=64.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CCh---hhh-------hCC
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQL---ENA-------LTG 109 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~dl---~~a-------l~d 109 (390)
++.|+||+|++|..++..|...+. ++++++.+. ......++.+.. .++..+... +|. .++ +..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 688999999999999999988886 899999875 233334444322 233332211 221 122 234
Q ss_pred CcEEEEcCCCCCC-C--CCCHHH---HHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 016424 110 MDLVIIPAGVPRK-P--GMTRDD---LFNINAG----IVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 110 ADiVIi~ag~p~k-~--g~~r~~---l~~~N~~----ii~~ia~~I~~~~p~a~iiv~t 158 (390)
.|+||..+|.... + +.+..+ .+..|.. +++.+.+.+.+...++.++++|
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 6999999886321 1 223332 3445543 3344455555545456666554
No 321
>PRK06046 alanine dehydrogenase; Validated
Probab=95.26 E-value=0.081 Score=52.73 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
..+|+|||+ |..|...+..+...+.+.++.+||++. ....+.++.+. ....+..+ +++++++. +|+|+++.
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~~---~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTVA---EDIEEACD-CDILVTTT 201 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEEe---CCHHHHhh-CCEEEEec
Confidence 469999999 999999888777666789999999987 34455555432 12345543 46778886 99999975
No 322
>PRK08339 short chain dehydrogenase; Provisional
Probab=95.26 E-value=0.7 Score=43.96 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------C
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------T 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------~ 108 (390)
.+.+.|.||+|++|..++..|+..+. +|++.|.+. +.....++.... ..++..+.. -+| .++.+ -
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 34788999999999999999998886 899999876 333444443321 123333221 122 22222 2
Q ss_pred CCcEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 016424 109 GMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 109 dADiVIi~ag~p~k~---g~~r~---~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
..|++|..+|.+... ..+.. ..+..| ....+.+.+.+.+.. .+.||++|-
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS 144 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTS 144 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 579999999875421 12222 223444 344556666665433 466766654
No 323
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.25 E-value=0.082 Score=54.51 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
.+..+|+|||+ |.+|..++..|...+ +.++.++|.+.. ...+.++.. . ... ..++.+++.++|+||.+
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G-~~~V~v~~rs~~ra~~la~~~g~-----~--~i~-~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKG-VGKILIANRTYERAEDLAKELGG-----E--AVK-FEDLEEYLAEADIVISS 247 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHcCC-----e--Eee-HHHHHHHHhhCCEEEEC
Confidence 45579999999 999999999888766 358999999752 223333221 1 111 23677889999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCcccH
Q 016424 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV 165 (390)
Q Consensus 117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tNPvd~~t 165 (390)
.|.|..- .+. +..+...... ...+++-+++|-|+=.
T Consensus 248 T~s~~~i-i~~------------e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 248 TGAPHPI-VSK------------EDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred CCCCCce-EcH------------HHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 7665421 111 1111111111 2458888899988763
No 324
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.25 E-value=0.14 Score=47.16 Aligned_cols=114 Identities=17% Similarity=0.283 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------- 107 (390)
+++|.|+||+|++|..++..+...+. ++.+++.+. ......++.... .++..+.+ -+| +.+++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999988876 789999876 222333343221 23333221 111 22222
Q ss_pred CCCcEEEEcCCCCC-CC--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPR-KP--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~-k~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
...|.||..+|.-. .+ ..+.. ..+..|..-...+.+.+..+ .....+++++
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s 140 (246)
T PRK05653 81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS 140 (246)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 34599999887421 11 12222 23555666555555555332 2234555555
No 325
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.25 E-value=0.055 Score=48.97 Aligned_cols=58 Identities=29% Similarity=0.472 Sum_probs=46.2
Q ss_pred CCCCCEEEEEcCCCCc-HHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 38 GAAGFKVAILGAAGGI-GQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~v-G~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
.-+..||.|||+ |.+ |..++..|...+. ++.+.+.+. .++.+.+++||+||.+
T Consensus 41 ~l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsa 94 (168)
T cd01080 41 DLAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVA 94 (168)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEc
Confidence 356679999999 874 8889998888775 688888641 3567889999999999
Q ss_pred CCCCC
Q 016424 117 AGVPR 121 (390)
Q Consensus 117 ag~p~ 121 (390)
.+.|.
T Consensus 95 t~~~~ 99 (168)
T cd01080 95 VGKPG 99 (168)
T ss_pred CCCCc
Confidence 88774
No 326
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.24 E-value=0.22 Score=46.30 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
+.+||.|||| |.+|...+..|...+. ++++++.+.... ..++.+. ..+......-+ ++.+.++|+||.+.+.
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~~-l~~l~~~---~~i~~~~~~~~-~~~l~~adlViaaT~d 80 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTEN-LVKLVEE---GKIRWKQKEFE-PSDIVDAFLVIAATND 80 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCHH-HHHHHhC---CCEEEEecCCC-hhhcCCceEEEEcCCC
Confidence 4569999999 9999999988888774 889998643222 2233322 12332221112 4668999999887644
Q ss_pred C
Q 016424 120 P 120 (390)
Q Consensus 120 p 120 (390)
+
T Consensus 81 ~ 81 (202)
T PRK06718 81 P 81 (202)
T ss_pred H
Confidence 4
No 327
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.24 E-value=0.34 Score=47.12 Aligned_cols=117 Identities=24% Similarity=0.183 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQL---ENA------- 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a------- 106 (390)
+.++|.|+||+|++|..++..|+..+. ++++.+.+.. .....++........+..+.. -+|. .++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 456899999999999999999998876 8899998762 222334432111123333321 1221 111
Q ss_pred hCCCcEEEEcCCCCCCCC-CC---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 016424 107 LTGMDLVIIPAGVPRKPG-MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 107 l~dADiVIi~ag~p~k~g-~~---r~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~tN 159 (390)
+...|+||..+|....+. .+ -...+..|..- .+.+.+.+.+. ..+.|+++|-
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS 152 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSS 152 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECC
Confidence 235799999998632221 11 12234455443 55555555443 3456666653
No 328
>PRK06482 short chain dehydrogenase; Provisional
Probab=95.23 E-value=0.13 Score=48.98 Aligned_cols=112 Identities=13% Similarity=0.002 Sum_probs=64.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------hCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------LTGM 110 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l~dA 110 (390)
++|.|+||+|++|+.++..|+..+. .+.+.+.+.. ...++.... ..++..+.+ -+|. .++ +...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999988876 7888887651 111221111 112332221 1222 122 2457
Q ss_pred cEEEEcCCCCCCCC-C--CH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 111 DLVIIPAGVPRKPG-M--TR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 111 DiVIi~ag~p~k~g-~--~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
|+||..+|...... + +. ...+..|..-...+.+.+..+ ...+.++++|
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~s 134 (276)
T PRK06482 78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVS 134 (276)
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 99999998754321 1 22 234556766666666665332 2334555554
No 329
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.22 E-value=0.24 Score=47.44 Aligned_cols=115 Identities=14% Similarity=0.116 Sum_probs=75.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC---CCeEEEEeC----CCChhhhhCCCcE
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLG----QPQLENALTGMDL 112 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~---~~~v~~~~~----t~dl~~al~dADi 112 (390)
+-+.|.|||+++|...+..|...+. .++|..... +..++.++.+... ..+|+-... -..+.+.+...|+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi 84 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI 84 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence 3466779999999999999999998 999999987 5777777774110 012221100 0124456778999
Q ss_pred EEEcCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 113 VIIPAGVPRKPGM------TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 113 VIi~ag~p~k~g~------~r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
+|..||..+-... +...++..|+.-+......+--. ...+-|||++
T Consensus 85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~ 139 (246)
T COG4221 85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLG 139 (246)
T ss_pred EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEec
Confidence 9999997553211 23456778877666655554332 2356788776
No 330
>PRK06128 oxidoreductase; Provisional
Probab=95.21 E-value=0.45 Score=46.17 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeC-CCC---hhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLG-QPQ---LEN------- 105 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~------- 105 (390)
.++|.|+||+|++|..++..|+..+. ++++.+.+. .......+.... .++..+.+ -+| ..+
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998876 777776643 122233333221 22322221 112 112
Q ss_pred hhCCCcEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424 106 ALTGMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 159 (390)
Q Consensus 106 al~dADiVIi~ag~p~--k~--g~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN 159 (390)
.+...|++|..+|... .+ ..+. ...+..|+.-...+++.+..+- +.+.+++++-
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 2346799999998642 22 1222 2356677776666666666553 3556666653
No 331
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.20 E-value=0.49 Score=44.38 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhh-------hh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LEN-------AL 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~-------al 107 (390)
.+.+.|+||+|++|..++..|+..+. +|++.|.+. ......++.+.. .++..+.. -+| ..+ .+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999998886 899999876 233444444322 23333221 122 112 23
Q ss_pred CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHH----HHHHHhCCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLC----EGIAKCCPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia----~~I~~~~p~a~iiv~t 158 (390)
...|++|..+|..... ..+.. ..+..|+.-...+. +.+.+....+.+++++
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 4789999998864321 12222 23445554433333 4443333345566554
No 332
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.19 E-value=0.1 Score=53.95 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
....+|+|||+ |.+|..++..+...+ +.+++++|.+. +...+.++. ..+.. ..++.+++.++|+||.+
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKG-VRKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISS 249 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEEC
Confidence 45579999999 999999998887665 45899999975 222333322 12221 13567889999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCcEEEEecCCCcccH
Q 016424 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIA-KCCPNATVNLISNPVNSTV 165 (390)
Q Consensus 117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~-~~~p~a~iiv~tNPvd~~t 165 (390)
.|.|..- .+.. .+.. .+. +.....+++-+++|-|+=.
T Consensus 250 T~s~~~~-i~~~--------~l~~---~~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 250 TGAPHPI-IGKG--------MVER---ALKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred CCCCCcE-EcHH--------HHHH---HHhhccCCCeEEEEeCCCCCCcc
Confidence 7765321 1111 1111 111 1134578888999988753
No 333
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.19 E-value=0.11 Score=53.86 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=76.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH---HHHHHhcccCCCeEEEEeCCCChh-----hhhCCCcEEE
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLGQPQLE-----NALTGMDLVI 114 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g---~a~DL~~~~~~~~v~~~~~t~dl~-----~al~dADiVI 114 (390)
||.|||+ |..|.+.+..|...+. ++.++|.+.... ....|... .++.+.+. +.. ..+.+.|.||
T Consensus 2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~g~-~~~~~~~~~~~~~~d~vv 73 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQE----GITVKLGK-PLELESFQPWLDQPDLVV 73 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHc----CCEEEECC-ccchhhhhHHhhcCCEEE
Confidence 7999999 9999999999988887 899999876221 11224332 23333332 211 3578899999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHhC
Q 016424 115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAG 176 (390)
Q Consensus 115 i~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~s 176 (390)
.+.|+|...- ........+++++.++........ +..+|-+ ||==.+++.+++.++...+
T Consensus 74 ~s~gi~~~~~-~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 74 VSPGIPWDHP-TLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred ECCCCCCCCH-HHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 9999885321 111223456777777655433322 2334444 4555577788888886653
No 334
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.19 E-value=0.082 Score=53.92 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHh-CCCCcEEEEEeCCc--hHHHHHHHhcccCC-CeEEEEeCCCChhhhhCCCcEEEE
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVII 115 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~-~~~~~eL~L~Di~~--~~g~a~DL~~~~~~-~~v~~~~~t~dl~~al~dADiVIi 115 (390)
....++|||+ |..+...+..+.. .+.+.+|.+||.+. +...+.++.+.... ..+... ++.++|+++||+|+.
T Consensus 154 da~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~---~s~~eav~~ADIVvt 229 (379)
T PRK06199 154 DSKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVV---DSIEEVVRGSDIVTY 229 (379)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe---CCHHHHHcCCCEEEE
Confidence 3469999999 9888887776665 44589999999987 45666677653211 245553 467899999999997
Q ss_pred cC
Q 016424 116 PA 117 (390)
Q Consensus 116 ~a 117 (390)
+.
T Consensus 230 aT 231 (379)
T PRK06199 230 CN 231 (379)
T ss_pred cc
Confidence 54
No 335
>PRK07576 short chain dehydrogenase; Provisional
Probab=95.18 E-value=0.3 Score=46.35 Aligned_cols=118 Identities=18% Similarity=0.198 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CC---Chhhhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENAL------ 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~---dl~~al------ 107 (390)
+.++|.|+||+|++|..++..|+..+. +|++.|.+. ......++.... .++..+.. -+ ++.+++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999988876 799999875 233333443221 12222211 11 222222
Q ss_pred -CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 016424 108 -TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNPV 161 (390)
Q Consensus 108 -~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~tNPv 161 (390)
...|+||..+|..... ..+.. ..+..|..-...+.+..... .+++.+++++...
T Consensus 84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~ 146 (264)
T PRK07576 84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ 146 (264)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 3569999988753321 12222 23445554444444444332 1346777776543
No 336
>PRK08226 short chain dehydrogenase; Provisional
Probab=95.18 E-value=0.3 Score=45.96 Aligned_cols=114 Identities=22% Similarity=0.299 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------C
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al-------~ 108 (390)
.+++.|+||+|++|+.++..|...+. ++++.+.+. ......++... ..++..+.+ -++ +.+++ .
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999988876 799999876 22233333221 123333221 122 22222 3
Q ss_pred CCcEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 109 GMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 109 dADiVIi~ag~p~k-~--g~~---r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
.-|+||..+|.... + ..+ ....+..|+.-...+.+.+..+ ...+.+++++
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~is 140 (263)
T PRK08226 82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMS 140 (263)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 56999999886321 1 111 1223555655555455544332 2344565554
No 337
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.17 E-value=0.098 Score=50.90 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
.||+|+|+ |+||+.++..|+..+ +.+|.|+|-|.
T Consensus 31 s~VlVvG~-GGVGs~vae~Lar~G-Vg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGI-GGVGSWAAEALARTG-IGAITLIDMDD 64 (268)
T ss_pred CCEEEECc-CHHHHHHHHHHHHcC-CCEEEEEeCCE
Confidence 49999999 999999999999988 36899999874
No 338
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.17 E-value=0.084 Score=51.77 Aligned_cols=96 Identities=18% Similarity=0.276 Sum_probs=64.0
Q ss_pred CCCccchhhhhhhhhcccCCCCCCEEEEEcCCCC-cHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE
Q 016424 19 YPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF 97 (390)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~-vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~ 97 (390)
+-||--.++.+....... ..+.++|+|||+ |+ +|.+++++|...+. ++.+++..
T Consensus 138 ~~p~T~~gii~~L~~~~i-~l~Gk~vvViG~-gg~vGkpia~~L~~~ga--tVtv~~~~--------------------- 192 (283)
T PRK14192 138 YGSATPAGIMRLLKAYNI-ELAGKHAVVVGR-SAILGKPMAMMLLNANA--TVTICHSR--------------------- 192 (283)
T ss_pred ccCCcHHHHHHHHHHcCC-CCCCCEEEEECC-cHHHHHHHHHHHHhCCC--EEEEEeCC---------------------
Confidence 445555566552222221 455679999999 66 99999999988775 78887741
Q ss_pred eCCCChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCC
Q 016424 98 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPV 161 (390)
Q Consensus 98 ~~t~dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPv 161 (390)
+.++.+.+++||+||.+.|.|. .-.. +...|+++++-+ .||.
T Consensus 193 --t~~L~~~~~~aDIvI~AtG~~~---~v~~-----------------~~lk~gavViDvg~n~~ 235 (283)
T PRK14192 193 --TQNLPELVKQADIIVGAVGKPE---LIKK-----------------DWIKQGAVVVDAGFHPR 235 (283)
T ss_pred --chhHHHHhccCCEEEEccCCCC---cCCH-----------------HHcCCCCEEEEEEEeec
Confidence 2356677899999999987543 1000 113678888777 4885
No 339
>PRK08278 short chain dehydrogenase; Provisional
Probab=95.16 E-value=1.1 Score=42.85 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---------HHHHHHHhcccCCCeEEEEeC----CCChhhh
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFLG----QPQLENA 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---------~g~a~DL~~~~~~~~v~~~~~----t~dl~~a 106 (390)
+++++.|+||+|++|..++..|+..+. +|+++|.+.. ...+.++.... .++..+.+ ..++.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHH
Confidence 345899999999999999999998886 8999998641 12233333221 22322211 1122222
Q ss_pred hC-------CCcEEEEcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424 107 LT-------GMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (390)
Q Consensus 107 l~-------dADiVIi~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN 159 (390)
++ ..|+||..+|.... + ..+.. ..+..|+.-...+.+.+..+ ...+.+++++-
T Consensus 81 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss 149 (273)
T PRK08278 81 VAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSP 149 (273)
T ss_pred HHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 32 67999999986332 1 22332 23445554444444444322 23566766664
No 340
>PRK07856 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.21 Score=46.85 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCC-C---ChhhhhC-------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALT------- 108 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t-~---dl~~al~------- 108 (390)
+.+++.|+||+|++|..++..|+..+. ++++.|.+... ... ...+..+... + +.+++++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVD----GRPAEFHAADVRDPDQVAALVDAIVERHG 74 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhc----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999988876 89999987522 111 1122222111 1 2233333
Q ss_pred CCcEEEEcCCCCC-CCC--CC---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 016424 109 GMDLVIIPAGVPR-KPG--MT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN 159 (390)
Q Consensus 109 dADiVIi~ag~p~-k~g--~~---r~~l~~~N~~ii~~ia~~I~~----~~p~a~iiv~tN 159 (390)
..|+||..+|... .+. .+ ....+..|+.-...+.+.+.. ....+.+++++.
T Consensus 75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS 135 (252)
T PRK07856 75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS 135 (252)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 4599999988532 221 11 123455565555555554433 223466766653
No 341
>PRK14851 hypothetical protein; Provisional
Probab=95.14 E-value=0.057 Score=59.05 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h--------------HH--HHHHHhcccCCCeEEEEeC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T--------------PG--VTADISHMDTGAVVRGFLG 99 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~--------------~g--~a~DL~~~~~~~~v~~~~~ 99 (390)
..||.|+|+ |++|+.++..|+..+. .+|.|+|-|. + +. .+..+.++....+|+.+..
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~GV-G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRTGI-GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA 120 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHhCC-CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 359999999 9999999999999985 7899999874 0 11 1222333333456666532
Q ss_pred ---CCChhhhhCCCcEEEEcC
Q 016424 100 ---QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 100 ---t~dl~~al~dADiVIi~a 117 (390)
..+..+-++++|+||-+.
T Consensus 121 ~i~~~n~~~~l~~~DvVid~~ 141 (679)
T PRK14851 121 GINADNMDAFLDGVDVVLDGL 141 (679)
T ss_pred CCChHHHHHHHhCCCEEEECC
Confidence 234456689999988654
No 342
>PRK06179 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.084 Score=50.04 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
.++|.|+||+|++|..++..|...+. +|++.+.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 35799999999999999999988875 799999875
No 343
>PRK12827 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.58 Score=43.24 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc------hHHHHHHHhcccCCCeEEEEeCC-CC---hhhhh--
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTADISHMDTGAVVRGFLGQ-PQ---LENAL-- 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~------~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al-- 107 (390)
++++|.|+||+|++|+.++..|+..+. ++++++... ......++... ..++..+.+. +| +++++
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence 357999999999999999999998876 788887643 11122223221 1233333221 22 22222
Q ss_pred -----CCCcEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHH
Q 016424 108 -----TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIA 146 (390)
Q Consensus 108 -----~dADiVIi~ag~p~k-~--g~~r---~~l~~~N~~ii~~ia~~I~ 146 (390)
...|+||..+|.... + ..+. ...+..|..-...+++.+.
T Consensus 81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 130 (249)
T PRK12827 81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL 130 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 358999999986542 1 1222 2345667777777776665
No 344
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.13 E-value=0.065 Score=53.63 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=54.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
-.-++|||+ |..+..-+..+..--.+.+|.+||.++ +...+.++..... ..+.. .++.++|+++||+|+.+-
T Consensus 130 a~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~-~~v~a---~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 130 ASTLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG-EAVGA---ADSAEEAVEGADIVVTAT 203 (330)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC-cccee---ccCHHHHhhcCCEEEEec
Confidence 357899999 988777777776655588999999998 4666777766432 33443 357789999999999864
No 345
>PRK07074 short chain dehydrogenase; Provisional
Probab=95.12 E-value=0.25 Score=46.30 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=62.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-------
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------- 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------- 108 (390)
+++.|+||+|++|..++..|+..+. +++++|.+. ......++.+ ..+..+.. -+| +..++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADALGD----ARFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999988775 899999875 2223333421 12222211 122 222332
Q ss_pred CCcEEEEcCCCCCCCC---CCHHH---HHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424 109 GMDLVIIPAGVPRKPG---MTRDD---LFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (390)
Q Consensus 109 dADiVIi~ag~p~k~g---~~r~~---l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN 159 (390)
+.|+||..+|...... .+..+ .+..|......+.+.+... ...+.+++++.
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 136 (257)
T PRK07074 77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGS 136 (257)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 4799999988643221 12221 2334554444444444322 23455665654
No 346
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=95.12 E-value=0.19 Score=49.15 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=69.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-----HHHHHhcc-----cCC-CeEEEEeCC----------C
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHM-----DTG-AVVRGFLGQ----------P 101 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-----~a~DL~~~-----~~~-~~v~~~~~t----------~ 101 (390)
+|.|+||+|++|+.++..|...+...+|++...+.... ....+... ... .+++...+. .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 57899999999999999998887545788888765211 11111111 000 345554432 1
Q ss_pred ChhhhhCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 102 dl~~al~dADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
++.+..+++|+||-.++... ......++...|+.-...+.+.+.+..... ++.+|
T Consensus 81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~-~v~iS 135 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP-LHYVS 135 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce-EEEEc
Confidence 23445678999999887542 122344556678877788887777665443 34433
No 347
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.10 E-value=0.071 Score=50.44 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
+++++.|+||+|++|..++..|+..+. +|++.|.+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999998886 899999875
No 348
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.39 Score=47.13 Aligned_cols=79 Identities=22% Similarity=0.132 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh----------hh
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE----------NA 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~----------~a 106 (390)
+.+++.|+||+|++|..++..|+..+. +|++.+.+. ......++........+..+.. -+|+. +.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999998885 899999876 2333444533211123333221 12221 11
Q ss_pred hCCCcEEEEcCCCC
Q 016424 107 LTGMDLVIIPAGVP 120 (390)
Q Consensus 107 l~dADiVIi~ag~p 120 (390)
....|++|..+|..
T Consensus 91 ~~~iD~li~nAG~~ 104 (313)
T PRK05854 91 GRPIHLLINNAGVM 104 (313)
T ss_pred CCCccEEEECCccc
Confidence 23579999999864
No 349
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.09 E-value=0.13 Score=49.89 Aligned_cols=89 Identities=22% Similarity=0.237 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhC-CCCcEE-EEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~-~~~~eL-~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
+++||+|||. |.+|+.++..+... +-. +| .++|.+... +.++.... ..... .+++++.+.++|+|++++
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~-el~aV~dr~~~~--a~~~a~~~--g~~~~---~~~~eell~~~D~Vvi~t 75 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRGLPGL-TLSAVAVRDPQR--HADFIWGL--RRPPP---VVPLDQLATHADIVVEAA 75 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhcCCCe-EEEEEECCCHHH--HHHHHHhc--CCCcc---cCCHHHHhcCCCEEEECC
Confidence 3579999999 99999999888764 322 44 488987522 22232211 11111 235677789999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 153 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~ 153 (390)
+.. ...+++..+-+.+.+.+
T Consensus 76 p~~----------------~h~e~~~~aL~aGk~Vi 95 (271)
T PRK13302 76 PAS----------------VLRAIVEPVLAAGKKAI 95 (271)
T ss_pred CcH----------------HHHHHHHHHHHcCCcEE
Confidence 422 23566666666655443
No 350
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.09 E-value=0.038 Score=51.51 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=48.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEe--CCCChhhhhCCCcEEEEcCCCC
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~--~t~dl~~al~dADiVIi~ag~p 120 (390)
|+|+||+|.+|+.++..|...+. ++..+=.+.....+..|.+.. ..+.... ...++.++|+|+|.|++..+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g--~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALG--AEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTT--TEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhccc--ceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 78999999999999998888664 566665554333444455432 2222111 1135677999999999987644
No 351
>PLN02712 arogenate dehydrogenase
Probab=95.08 E-value=0.1 Score=57.11 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=47.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhC-CCcEEEEc
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIP 116 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~-dADiVIi~ 116 (390)
..+++||+|||. |.+|..++..+...+. +|+.||.+.....+.++ . +..+ +++.+.+. ++|+||++
T Consensus 366 ~~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~-----G--v~~~---~~~~el~~~~aDvVILa 432 (667)
T PLN02712 366 DGSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL-----G--VSYF---SDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc-----C--CeEe---CCHHHHHhcCCCEEEEC
Confidence 346689999998 9999999999988775 89999987521122211 1 2222 35666565 59999998
Q ss_pred C
Q 016424 117 A 117 (390)
Q Consensus 117 a 117 (390)
.
T Consensus 433 v 433 (667)
T PLN02712 433 T 433 (667)
T ss_pred C
Confidence 6
No 352
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.65 Score=43.48 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------- 107 (390)
.+++.|+||+|++|..++..|+..+. ++++.+.+. ......++.+.. .++..+.. -+| .++++
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999998886 899999876 333444554332 23333221 112 11222
Q ss_pred CCCcEEEEcCCCC--CCC--CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424 108 TGMDLVIIPAGVP--RKP--GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 108 ~dADiVIi~ag~p--~k~--g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
...|++|..+|.. ..+ ..+.. ..+..|.. ..+.+.+.+.+. ..+.+++++.
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS 143 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTST 143 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 3679999999863 222 22222 33556654 334444444433 3455665543
No 353
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.06 E-value=0.1 Score=51.00 Aligned_cols=67 Identities=28% Similarity=0.386 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.++|+|+|. |.+|..++..|...++ .+..++.+. ....+.++.=... .. .....++.++||+||++.
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~--~~-----~~~~~~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDE--LT-----VAGLAEAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCcccc--cc-----cchhhhhcccCCEEEEec
Confidence 579999998 9999999999999998 444555554 1112222221110 00 112247789999999985
No 354
>PRK06101 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.18 Score=47.06 Aligned_cols=112 Identities=23% Similarity=0.225 Sum_probs=62.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccC-CCeEEEEeCCCChhhhhCC----CcEEE
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTG----MDLVI 114 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~-~~~v~~~~~t~dl~~al~d----ADiVI 114 (390)
.+|.|+||+|++|..++..|...+. ++++.|.+.. ........+... ..++. ...+.+++++. -|.+|
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~d~~i 76 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVLDELHTQSANIFTLAFDVT---DHPGTKAALSQLPFIPELWI 76 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhcCCCeEEEeeCC---CHHHHHHHHHhcccCCCEEE
Confidence 5789999999999999999988876 8999998762 222111111100 01111 01223333333 47777
Q ss_pred EcCCCCCC-C--CCCHH---HHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 016424 115 IPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLIS 158 (390)
Q Consensus 115 i~ag~p~k-~--g~~r~---~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~t 158 (390)
..+|.... + ..+.. ..+..|..-...+.+.+..+ .+...+++++
T Consensus 77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~is 127 (240)
T PRK06101 77 FNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVG 127 (240)
T ss_pred EcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEe
Confidence 77764321 1 12222 34667776666666666554 2345566554
No 355
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.04 E-value=0.74 Score=43.42 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh----------hhh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE----------NAL 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~----------~al 107 (390)
.+.+.|+||+|++|..++..+...+. ++++.+.+. ......++.......++..+.. -+|.+ +.+
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999998886 799999976 3333444443221123333221 12321 122
Q ss_pred CCCcEEEEcCCCC
Q 016424 108 TGMDLVIIPAGVP 120 (390)
Q Consensus 108 ~dADiVIi~ag~p 120 (390)
...|++|..+|..
T Consensus 86 g~id~li~~Ag~~ 98 (265)
T PRK07062 86 GGVDMLVNNAGQG 98 (265)
T ss_pred CCCCEEEECCCCC
Confidence 4579999999864
No 356
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.04 E-value=0.2 Score=52.64 Aligned_cols=129 Identities=19% Similarity=0.174 Sum_probs=74.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
+.||.|+|. |+.|.+++..|...+. ++..+|.+.......+|.... ..++.+.+..+ .+.+.++|+||.+.|+|
T Consensus 7 ~~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~--~~~~~~~g~~~-~~~~~~~d~vv~sp~I~ 80 (498)
T PRK02006 7 GPMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAEL--PDAEFVGGPFD-PALLDGVDLVALSPGLS 80 (498)
T ss_pred CCEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhc--CCcEEEeCCCc-hhHhcCCCEEEECCCCC
Confidence 458999999 9999998888888886 899999865321222354432 23333333223 46788999999999988
Q ss_pred CCCCCCHHHH---HHHHHHHHHH--H-HHHHHHhC-C--CcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424 121 RKPGMTRDDL---FNINAGIVRT--L-CEGIAKCC-P--NATVNLI--SNPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 121 ~k~g~~r~~l---~~~N~~ii~~--i-a~~I~~~~-p--~a~iiv~--tNPvd~~t~i~ae~~~~~ 175 (390)
...-..+-.+ -..|++++.+ + ...++..+ + ...+|-+ ||==.+++.+++.+++..
T Consensus 81 ~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~ 146 (498)
T PRK02006 81 PLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERA 146 (498)
T ss_pred CcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 6421111111 1234444422 1 12222211 1 1123334 555557778887877665
No 357
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.03 E-value=0.65 Score=43.76 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=48.7
Q ss_pred CCEEEEEcCCC-CcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCC-CC---hhhh-------
Q 016424 41 GFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENA------- 106 (390)
Q Consensus 41 ~~KI~VIGa~G-~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~a------- 106 (390)
.+++.|+||+| ++|..++..++..+. +|++.|.+. ......++.......++..+... ++ ..++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46899999976 799999999998886 689999876 23333344331111234333211 12 1122
Q ss_pred hCCCcEEEEcCCCC
Q 016424 107 LTGMDLVIIPAGVP 120 (390)
Q Consensus 107 l~dADiVIi~ag~p 120 (390)
+...|++|..+|..
T Consensus 95 ~g~id~li~~ag~~ 108 (262)
T PRK07831 95 LGRLDVLVNNAGLG 108 (262)
T ss_pred cCCCCEEEECCCCC
Confidence 23579999999864
No 358
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.02 E-value=0.81 Score=42.92 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------h
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l 107 (390)
.++|.|+||+|++|..++..|...+. ++++.|.+. ......++.+.. .++..+.. -+|. .++ +
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56999999999999999999998875 788888875 233344454322 12222211 1221 122 2
Q ss_pred CCCcEEEEcCCCCCC--CCCCHHH---HHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPRK--PGMTRDD---LFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~k--~g~~r~~---l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
...|+||..+|.... ...+..+ .+..|+.-...+.+.+..+ ...+.+++++
T Consensus 87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~is 145 (255)
T PRK06113 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTIT 145 (255)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 356999999885321 1233333 2556665555555554322 2334555554
No 359
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.02 E-value=0.12 Score=49.52 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCC---------CcEEEEEeCCc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVN 77 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~---------~~eL~L~Di~~ 77 (390)
.++.||.|||+ |++|+.++..|+..+. ..+|+|+|-|.
T Consensus 9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 35569999999 9999999999987541 12999999874
No 360
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.01 E-value=0.042 Score=55.37 Aligned_cols=74 Identities=23% Similarity=0.418 Sum_probs=49.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCC--CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 115 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~--~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi 115 (390)
+.+.+||+||||+|.+|+.+..+|...+ .+.+|.++......|....+.. ..+.+.. .| .++++++|+|+.
T Consensus 2 ~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~~--~~-~~~~~~~Divf~ 74 (347)
T PRK06728 2 SEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQE--AK-INSFEGVDIAFF 74 (347)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEEe--CC-HHHhcCCCEEEE
Confidence 3456899999999999999999998655 3567888877652232222221 2344332 23 356799999999
Q ss_pred cCC
Q 016424 116 PAG 118 (390)
Q Consensus 116 ~ag 118 (390)
+.+
T Consensus 75 a~~ 77 (347)
T PRK06728 75 SAG 77 (347)
T ss_pred CCC
Confidence 764
No 361
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.01 E-value=0.11 Score=49.40 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccC-CCeEEEEeCCCC-------hhhhhCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQ-------LENALTGM 110 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~-~~~v~~~~~t~d-------l~~al~dA 110 (390)
+++|.|+||+|++|..++..|...+. .+++.+.+. ......++.+... ..++.- .++ ..+.+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~~~~i 79 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGGPLDVTD---PASFAAFLDAVEADLGPI 79 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEEEccCCC---HHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999988876 789999876 2223333331110 011110 011 11223568
Q ss_pred cEEEEcCCCCCCCC---CCH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEec
Q 016424 111 DLVIIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 111 DiVIi~ag~p~k~g---~~r---~~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~t 158 (390)
|++|..+|...... .+. ...+..|+.-. +.+.+.+.+. ..+.|+++|
T Consensus 80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~is 136 (273)
T PRK07825 80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVA 136 (273)
T ss_pred CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEc
Confidence 99999998643211 121 23345565433 3344444333 345666665
No 362
>PRK13529 malate dehydrogenase; Provisional
Probab=94.99 E-value=0.38 Score=51.23 Aligned_cols=125 Identities=17% Similarity=0.260 Sum_probs=80.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh----CCCC-----cEEEEEeCCc--hHH------HHHHHhcccCCCeEEEE---eCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN--TPG------VTADISHMDTGAVVRGF---LGQ 100 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~----~~~~-----~eL~L~Di~~--~~g------~a~DL~~~~~~~~v~~~---~~t 100 (390)
..||++.|| |..|..++.+|.. .++- ..++++|.+. ..+ ....+.+-. ..+... ...
T Consensus 295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~~~~~~ 371 (563)
T PRK13529 295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWDTEGDV 371 (563)
T ss_pred hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccccccCC
Confidence 479999999 9999999987764 4542 5899999986 111 111222211 111100 112
Q ss_pred CChhhhhCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc--ccHHHHHHHHHHhC
Q 016424 101 PQLENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAG 176 (390)
Q Consensus 101 ~dl~~al~dA--DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd--~~t~i~ae~~~~~s 176 (390)
.++.++++++ |++|=+.+.|-- +-+++.+.|.++|++.+|+-.|||.. -.++ .++ .+.+
T Consensus 372 ~~L~e~v~~~kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tp--e~a-~~~T 434 (563)
T PRK13529 372 ISLLEVVRNVKPTVLIGVSGQPGA--------------FTEEIVKEMAAHCERPIIFPLSNPTSRAEATP--EDL-IAWT 434 (563)
T ss_pred CCHHHHHhccCCCEEEEecCCCCC--------------CCHHHHHHHHhcCCCCEEEECCCcCCCcccCH--HHH-HHhh
Confidence 5799999999 999877655421 23478888999999999999999987 4443 222 2322
Q ss_pred CCCCCceeecc
Q 016424 177 TYDPKKLLGVT 187 (390)
Q Consensus 177 ~~p~~kviG~t 187 (390)
+-+.+|++.
T Consensus 435 --~Grai~AtG 443 (563)
T PRK13529 435 --DGRALVATG 443 (563)
T ss_pred --cCCEEEEEC
Confidence 125677773
No 363
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=94.99 E-value=0.76 Score=43.10 Aligned_cols=75 Identities=23% Similarity=0.269 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~ 108 (390)
.+++.|.||+|++|..++..|...+. +|+++|.++ ......++.... .++..+.. -+| ..++ +.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999998886 899999875 223333343221 22222211 122 1222 23
Q ss_pred CCcEEEEcCCC
Q 016424 109 GMDLVIIPAGV 119 (390)
Q Consensus 109 dADiVIi~ag~ 119 (390)
..|++|..+|.
T Consensus 84 ~id~lv~nAg~ 94 (260)
T PRK12823 84 RIDVLINNVGG 94 (260)
T ss_pred CCeEEEECCcc
Confidence 67999999875
No 364
>PLN00203 glutamyl-tRNA reductase
Probab=94.98 E-value=0.14 Score=54.27 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
...||+|||+ |.+|..++..|...+ +.+|++++.+. ....+..+. ...+.... .+++.+++.+||+||.+.
T Consensus 265 ~~kkVlVIGA-G~mG~~~a~~L~~~G-~~~V~V~nRs~era~~La~~~~----g~~i~~~~-~~dl~~al~~aDVVIsAT 337 (519)
T PLN00203 265 ASARVLVIGA-GKMGKLLVKHLVSKG-CTKMVVVNRSEERVAALREEFP----DVEIIYKP-LDEMLACAAEADVVFTST 337 (519)
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhC----CCceEeec-HhhHHHHHhcCCEEEEcc
Confidence 3579999999 999999998888766 46799999875 222333222 12232221 246678899999999876
Q ss_pred CCC
Q 016424 118 GVP 120 (390)
Q Consensus 118 g~p 120 (390)
+.+
T Consensus 338 ~s~ 340 (519)
T PLN00203 338 SSE 340 (519)
T ss_pred CCC
Confidence 544
No 365
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.95 E-value=0.074 Score=52.19 Aligned_cols=59 Identities=17% Similarity=0.353 Sum_probs=45.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.-+..+|+|||+++-+|.+++.+|...+. ++..++.. |.++.+.+++||+||.+.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAv 209 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAV 209 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECC
Confidence 34567999999933499999999987764 66666532 236778899999999999
Q ss_pred CCCC
Q 016424 118 GVPR 121 (390)
Q Consensus 118 g~p~ 121 (390)
|.|.
T Consensus 210 g~p~ 213 (286)
T PRK14175 210 GKPG 213 (286)
T ss_pred CCCc
Confidence 8874
No 366
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=94.95 E-value=0.21 Score=49.78 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=45.1
Q ss_pred CEEEEEcCCCCc--------------------HHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEe
Q 016424 42 FKVAILGAAGGI--------------------GQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL 98 (390)
Q Consensus 42 ~KI~VIGa~G~v--------------------G~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~ 98 (390)
|||+|-|| |+- |+++|..|...++ +|++||++.. ...+..+.+.. +..
T Consensus 1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaG----A~~-- 71 (341)
T TIGR01724 1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAG----VKV-- 71 (341)
T ss_pred CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCC----Cee--
Confidence 67888887 642 6778888887777 9999998752 22333454432 122
Q ss_pred CCCChhhhhCCCcEEEEcC
Q 016424 99 GQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 99 ~t~dl~~al~dADiVIi~a 117 (390)
.++..++.++||+||++-
T Consensus 72 -AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred -cCCHHHHHhCCCEEEEec
Confidence 235679999999999985
No 367
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.92 E-value=0.11 Score=55.23 Aligned_cols=93 Identities=20% Similarity=0.292 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
..++|+|||. |.+|+.++..+...+. +++.||.......+.++ .++. .+++.+.+++||+|++....
T Consensus 137 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvV~l~lPl 203 (525)
T TIGR01327 137 YGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL-------GVEL---VDDLDELLARADFITVHTPL 203 (525)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE---cCCHHHHHhhCCEEEEccCC
Confidence 4579999999 9999999999887776 89999985322222222 1222 23688999999999998532
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
. + .+..++- .+.+....|++++|+++
T Consensus 204 t--~---------~T~~li~--~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 204 T--P---------ETRGLIG--AEELAKMKKGVIIVNCA 229 (525)
T ss_pred C--h---------hhccCcC--HHHHhcCCCCeEEEEcC
Confidence 1 1 1111221 24455556889999886
No 368
>PRK08589 short chain dehydrogenase; Validated
Probab=94.92 E-value=0.79 Score=43.68 Aligned_cols=113 Identities=16% Similarity=0.239 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------hC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l~ 108 (390)
.+++.|+||+|++|..++..|+..+. ++++.|.++ ......++.+.. .++..+.. -+| ..++ +.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999998886 899999875 333444554321 12222211 112 1122 23
Q ss_pred CCcEEEEcCCCCCCCC----CCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424 109 GMDLVIIPAGVPRKPG----MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 109 dADiVIi~ag~p~k~g----~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
..|++|..+|.....+ .+.. ..+..|+. +.+.+.+.+.+. ++.|++++-
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS 141 (272)
T PRK08589 82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSS 141 (272)
T ss_pred CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCc
Confidence 4799999998753221 1222 23344544 334444444332 367777764
No 369
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.90 E-value=0.1 Score=52.08 Aligned_cols=73 Identities=26% Similarity=0.373 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh-CCCCcEEEEEeCCchHHHH-HHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~-~~~~~eL~L~Di~~~~g~a-~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
++||+|+||+|.||+.+...|.. ...+.++.++=...-.|.. .++..-.. .+.- ...| ...++++|+|+.++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~-~~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAAD-EFVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--cccc-ccccccCCEEEEeCc
Confidence 46999999999999999999998 5677888888876533332 44432211 1110 0123 245779999999985
No 370
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.88 E-value=0.028 Score=54.45 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=78.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
++||+|+|++|.+|+.++..+...+-+.=+.++|... ..+ .+.++.... ...+.. ++|+++...++|+||...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~---~~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPV---TDDLEAVETDPDVLIDFT 76 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCcee---eCCHHHhcCCCCEEEECC
Confidence 4799999966999999999988776555566788432 111 122222221 112443 246655435689998875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccHHHHHHHHHHhCCCCCCcee-ec-cccc---HH
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GV-TMLD---VV 192 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t~i~ae~~~~~s~~p~~kvi-G~-t~Ld---s~ 192 (390)
.| ....+++....++..+ +++-|...+ ..- .+.+..+..-....++ +. ..+- -.
T Consensus 77 -~p---------------~~~~~~~~~al~~g~~--vVigttg~~--~e~-~~~l~~aA~~~g~~v~~a~NfSlGv~ll~ 135 (266)
T TIGR00036 77 -TP---------------EGVLNHLKFALEHGVR--LVVGTTGFS--EED-KQELADLAEKAGIAAVIAPNFSIGVNLMF 135 (266)
T ss_pred -Ch---------------HHHHHHHHHHHHCCCC--EEEECCCCC--HHH-HHHHHHHHhcCCccEEEECcccHHHHHHH
Confidence 22 2344555555555422 333342221 111 1222222111001122 22 1222 24
Q ss_pred HHHHHHHHHhCCCCCCCceEEeecccC
Q 016424 193 RANTFVAEVLGLDPRDVDVPVVGGHAG 219 (390)
Q Consensus 193 R~~~~la~~l~v~p~~V~~~ViG~Hg~ 219 (390)
++-...++.| .+.++-++--|+.
T Consensus 136 ~~~~~aa~~l----~~~dieI~E~HH~ 158 (266)
T TIGR00036 136 KLLEKAAKYL----GDYDIEIIELHHR 158 (266)
T ss_pred HHHHHHHHhc----cCCCEEeeeeccC
Confidence 5556666766 2478899999986
No 371
>PRK09072 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.47 Score=44.77 Aligned_cols=114 Identities=22% Similarity=0.237 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCChh---h------hhC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---N------ALT 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl~---~------al~ 108 (390)
.++|.|+||+|++|..++..++..+. ++++.|.+. ......++.+ ..++..+.. -+|.. + ++.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 46899999999999999999988886 899999876 2223333311 123333321 12221 1 134
Q ss_pred CCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424 109 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (390)
Q Consensus 109 dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN 159 (390)
..|+||..+|...... .+. ...+..|..-...+.+.+..+ .+.+.+++++.
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS 139 (263)
T PRK09072 80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS 139 (263)
T ss_pred CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 6799999998653211 121 233456655544455544432 23355666654
No 372
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=94.87 E-value=0.68 Score=43.00 Aligned_cols=115 Identities=13% Similarity=0.221 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------ 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------ 107 (390)
.+++.|+||+|++|+.++..++..+. ++++.+... ......++.+.. .++..+.. -+| +.+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999998888775 666554322 223334443321 23333321 122 22223
Q ss_pred -CCCcEEEEcCCCCCCCC---CC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424 108 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (390)
Q Consensus 108 -~dADiVIi~ag~p~k~g---~~---r~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN 159 (390)
...|+||..+|...... .+ -.+.+..|..-...+.+.+..+ ...+.+++++.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 34799999988643221 11 1234566766555555555543 33455666653
No 373
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.86 E-value=0.41 Score=47.62 Aligned_cols=77 Identities=23% Similarity=0.184 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-CCCC---hhhh-------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~t~d---l~~a------- 106 (390)
+.++|.|+||+|++|..++..++..+. +|++.+.++ +.....++.... .++.... .-+| .+++
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999886 899999886 333444444322 2232221 1122 2222
Q ss_pred hCCCcEEEEcCCCC
Q 016424 107 LTGMDLVIIPAGVP 120 (390)
Q Consensus 107 l~dADiVIi~ag~p 120 (390)
+...|++|..+|..
T Consensus 82 ~g~iD~lVnnAG~~ 95 (330)
T PRK06139 82 GGRIDVWVNNVGVG 95 (330)
T ss_pred cCCCCEEEECCCcC
Confidence 24679999999864
No 374
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=94.86 E-value=0.2 Score=50.75 Aligned_cols=108 Identities=22% Similarity=0.262 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEe----CCCChhhhhCCCcEEE
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI 114 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~----~t~dl~~al~dADiVI 114 (390)
++.++.|+||+|.+|..++..|...+...|+.+.|+... ...-.|..... ..+++... ...++..|+.++ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~-~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFR-SGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhccc-CCceeEEecchhhhhhhhhhccCc-eEE
Confidence 566999999999999999999998887779999999762 21212222111 23333322 134678899999 666
Q ss_pred Ec-CC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 016424 115 IP-AG-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC 149 (390)
Q Consensus 115 i~-ag-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~ 149 (390)
.. ++ .|...-..|......|+.--+.+.+.+.+.+
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~ 117 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG 117 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhC
Confidence 64 33 3333333466666778877777777777765
No 375
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.86 E-value=0.11 Score=52.84 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhC-CC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~-~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
|+||+|+||+|.+|+.+..++... .+ +.+++++.....-+...++.. .....+. ..| .+.++++|+|+.++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g----~~~~v~~-~~~-~~~~~~~Divf~a~~ 74 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGG----KEGTLQD-AFD-IDALKKLDIIITCQG 74 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCC----CcceEEe-cCC-hhHhcCCCEEEECCC
Confidence 479999999999999999755554 43 677888766432222212221 1122222 123 256899999999874
No 376
>PRK09135 pteridine reductase; Provisional
Probab=94.86 E-value=0.33 Score=44.94 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT----- 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~----- 108 (390)
.++|.|+||+|++|+.++..|...+. +++++|... ......++.+... ..+..+.+ -+| ...+++
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999988876 889998753 2333344443221 12222221 122 222233
Q ss_pred --CCcEEEEcCCCCC--CCC-CCH---HHHHHHHHHHHHHHHHHHHH
Q 016424 109 --GMDLVIIPAGVPR--KPG-MTR---DDLFNINAGIVRTLCEGIAK 147 (390)
Q Consensus 109 --dADiVIi~ag~p~--k~g-~~r---~~l~~~N~~ii~~ia~~I~~ 147 (390)
+.|+||-.+|... ... .+. .+.+..|+.-...+.+.+..
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 129 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAP 129 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHH
Confidence 5799999988532 111 122 23455666555555555443
No 377
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.86 E-value=0.21 Score=45.66 Aligned_cols=111 Identities=18% Similarity=0.149 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhC---CCcEE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALT---GMDLV 113 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~---dADiV 113 (390)
+++|.|+||+|++|..++..|... .+++++|.+... ..++.+.. ..++.+.+ ..++.++++ +.|+|
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~---~~V~~~~r~~~~--~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~v 75 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT---HTLLLGGRPAER--LDELAAEL--PGATPFPVDLTDPEAIAAAVEQLGRLDVL 75 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh---CCEEEEeCCHHH--HHHHHHHh--ccceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence 358999999999999999988877 379999987521 11222111 11222211 123334444 58999
Q ss_pred EEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424 114 IIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLIS 158 (390)
Q Consensus 114 Ii~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t 158 (390)
|.++|.+.... .+. ...+..|......+.+.+.++. -...+++++
T Consensus 76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~s 128 (227)
T PRK08219 76 VHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFIN 128 (227)
T ss_pred EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 99988643211 111 2235555555444444443321 123455554
No 378
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=94.85 E-value=0.78 Score=43.64 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=49.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l 107 (390)
.+++.|+||+|++|..++..|+..+. +++++|.+. ......++.+.. .++..+.. -+| ..++ +
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999998886 899999875 333344443321 23333221 112 1111 2
Q ss_pred CCCcEEEEcCCC
Q 016424 108 TGMDLVIIPAGV 119 (390)
Q Consensus 108 ~dADiVIi~ag~ 119 (390)
...|++|..+|.
T Consensus 86 g~id~li~~ag~ 97 (278)
T PRK08277 86 GPCDILINGAGG 97 (278)
T ss_pred CCCCEEEECCCC
Confidence 468999999885
No 379
>PRK12742 oxidoreductase; Provisional
Probab=94.84 E-value=0.21 Score=46.03 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=28.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 76 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~ 76 (390)
.++|.|+||+|+||..++..|+..+. ++++.+..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~ 39 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG 39 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence 45899999999999999999988876 77777653
No 380
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.84 E-value=0.81 Score=42.41 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------ 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------ 107 (390)
.++++.|+||+|++|..++..|..++. +++++|.+. ......++.... .++..+.+ -+|. ..++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999998886 899999876 222333333211 23332222 1232 1222
Q ss_pred -CCCcEEEEcCCCCC
Q 016424 108 -TGMDLVIIPAGVPR 121 (390)
Q Consensus 108 -~dADiVIi~ag~p~ 121 (390)
.+.|+||..+|...
T Consensus 81 ~~~id~lv~~ag~~~ 95 (241)
T PRK07454 81 FGCPDVLINNAGMAY 95 (241)
T ss_pred cCCCCEEEECCCccC
Confidence 35799999998643
No 381
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.83 E-value=0.14 Score=50.21 Aligned_cols=76 Identities=22% Similarity=0.276 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
.+.+++.|+|| |+.+.++++.|+..+ +.+|.++|++. +..++.++.+......+.... ..++.+.+.++|+||.+
T Consensus 125 ~~~k~vlilGa-GGaarAi~~aL~~~g-~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~-~~~~~~~~~~~divINa 201 (283)
T PRK14027 125 AKLDSVVQVGA-GGVGNAVAYALVTHG-VQKLQVADLDTSRAQALADVINNAVGREAVVGVD-ARGIEDVIAAADGVVNA 201 (283)
T ss_pred cCCCeEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhccCcceEEecC-HhHHHHHHhhcCEEEEc
Confidence 34568999999 999999999998766 46899999976 344444443211111122211 11223456789999997
Q ss_pred C
Q 016424 117 A 117 (390)
Q Consensus 117 a 117 (390)
.
T Consensus 202 T 202 (283)
T PRK14027 202 T 202 (283)
T ss_pred C
Confidence 4
No 382
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=94.82 E-value=0.23 Score=51.42 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=74.7
Q ss_pred EEEEEcCCCCcHHH-HHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424 43 KVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (390)
Q Consensus 43 KI~VIGa~G~vG~~-~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~ 121 (390)
||-+||. |+.|.. ++..|...+. ++..+|.+... ...+|... .++.+.+ .+ .+.++++|+||.+.|+|.
T Consensus 1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~----gi~~~~g-~~-~~~~~~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEAL----GIPIYIG-HS-AENLDDADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHC----cCEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence 5789999 999997 8889998887 89999986533 22334432 3343333 33 356889999999999985
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHhCCCCC
Q 016424 122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAGTYDP 180 (390)
Q Consensus 122 k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~s~~p~ 180 (390)
..-+ .......+++++.+.-- +.+...+..+|-+ ||==.++|.+++.+++.. ++++
T Consensus 71 ~~p~-~~~a~~~~i~v~~~~el-~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~-g~~~ 128 (448)
T TIGR01082 71 DNPE-IVEAKERGIPVIRRAEM-LAELMRFRHSIAVAGTHGKTTTTAMIAVILKEA-GLDP 128 (448)
T ss_pred CCHH-HHHHHHcCCceEeHHHH-HHHHHhcCcEEEEECCCChHHHHHHHHHHHHHc-CCCC
Confidence 3221 11223445555544322 2222212223344 455456677777777654 4433
No 383
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=94.81 E-value=0.042 Score=52.42 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=45.0
Q ss_pred chhHHhhHHHHHHhccCCCccchhhhhhhhhcccCCCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 3 FSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
-|.+-+||..|+..-+=+..|+ ..+. .+|+|+|. |+||+-.+-.|+..+ +.+|.|+|.|.
T Consensus 5 ~~~~~~~rf~~~~~l~G~~~le------kl~~-------~~V~VvGi-GGVGSw~veALaRsG-ig~itlID~D~ 64 (263)
T COG1179 5 ISDAYRQRFGGIARLYGEDGLE------KLKQ-------AHVCVVGI-GGVGSWAVEALARSG-IGRITLIDMDD 64 (263)
T ss_pred hHHHHHHHhhhHHHHcChhHHH------HHhh-------CcEEEEec-CchhHHHHHHHHHcC-CCeEEEEeccc
Confidence 3556788998886544333443 2222 28999999 999999999999988 46899999886
No 384
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.81 E-value=0.14 Score=49.87 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
.+..++.|+|+ |++|..++..|...+ +.+|.+++.+. +...+.++... ..+.. . .+..+++.++|+||.+
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g-~~~V~v~~R~~~~a~~l~~~~~~~---~~~~~-~--~~~~~~~~~~DivIna 192 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLG-VAEITIVNRTVERAEELAKLFGAL---GKAEL-D--LELQEELADFDLIINA 192 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhhhc---cceee-c--ccchhccccCCEEEEC
Confidence 34568999999 999999999998777 35899999986 33344444321 11222 1 1334678999999998
Q ss_pred CCCCCC
Q 016424 117 AGVPRK 122 (390)
Q Consensus 117 ag~p~k 122 (390)
......
T Consensus 193 Tp~g~~ 198 (278)
T PRK00258 193 TSAGMS 198 (278)
T ss_pred CcCCCC
Confidence 654443
No 385
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.80 E-value=0.32 Score=45.36 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
..||.|||+ |.+|..-+..|...+. +++++|.+... ...++... .+++...+..+ .+.+.++|+||.+.+.+
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~---~~i~~~~~~~~-~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQ---GGITWLARCFD-ADILEGAFLVIAATDDE 80 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHc---CCEEEEeCCCC-HHHhCCcEEEEECCCCH
Confidence 459999999 9999999988888775 88999986432 12233322 24554433333 36689999999986544
No 386
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.78 E-value=0.13 Score=49.26 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=61.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEe-CCCC---hhhhhC--------C
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--------G 109 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~-~t~d---l~~al~--------d 109 (390)
++|.|+||+|++|..++..|...+. +|++.+.+... ..++.... +..+. .-+| ++++++ .
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~--~~~l~~~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~g~ 76 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEED--VAALEAEG----LEAFQLDYAEPESIAALVAQVLELSGGR 76 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHCC----ceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999988876 89999987521 11222211 11111 1112 112222 4
Q ss_pred CcEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424 110 MDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 110 ADiVIi~ag~p~k~---g~~r---~~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t 158 (390)
.|+||..+|..... ..+. ...+..|..- .+.+.+.+.+.. .+.|+++|
T Consensus 77 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~is 134 (277)
T PRK05993 77 LDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCS 134 (277)
T ss_pred ccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEEC
Confidence 69999998864321 1222 2345566544 455555555443 34566665
No 387
>PRK05872 short chain dehydrogenase; Provisional
Probab=94.78 E-value=0.54 Score=45.60 Aligned_cols=114 Identities=23% Similarity=0.275 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-CCCCh---hh-------h
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------A 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~t~dl---~~-------a 106 (390)
+.++|.|+||+|++|..++..++..+. +|++.|.+. +...+.++.. ...+..+. .-+|. .+ .
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999998886 899999876 2334444432 12222211 11232 11 1
Q ss_pred hCCCcEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424 107 LTGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLIS 158 (390)
Q Consensus 107 l~dADiVIi~ag~p~k-~--g~~r---~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t 158 (390)
+...|+||..+|.... + ..+. ...+..|..-...+++.+..+- ..+.|++++
T Consensus 83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~is 142 (296)
T PRK05872 83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVS 142 (296)
T ss_pred cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 2467999999986431 1 1122 2234556554444444443321 345666665
No 388
>PRK07023 short chain dehydrogenase; Provisional
Probab=94.77 E-value=0.18 Score=46.97 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
+|+|.|+||+|++|..++..|...+. ++++.+.+.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence 57999999999999999999988875 788898875
No 389
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=94.77 E-value=0.52 Score=43.84 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=48.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeC-CCCh----------hhhhC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQL----------ENALT 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al~ 108 (390)
++|.|.||+|++|+.++..|...+. +++++|.+.. .....++.... .++....+ -+|. .+.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999988876 8999999762 22222333221 23333221 1222 23356
Q ss_pred CCcEEEEcCCCC
Q 016424 109 GMDLVIIPAGVP 120 (390)
Q Consensus 109 dADiVIi~ag~p 120 (390)
+.|+||..+|..
T Consensus 78 ~~d~vi~~a~~~ 89 (255)
T TIGR01963 78 GLDILVNNAGIQ 89 (255)
T ss_pred CCCEEEECCCCC
Confidence 789999998763
No 390
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.77 E-value=0.87 Score=42.22 Aligned_cols=111 Identities=19% Similarity=0.166 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh----------hhhh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~al 107 (390)
.++|.|+||+|++|+.++..|...+. ++++.+.+. ......++. .++..+.. .+|. .+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999998886 899999875 122222221 12222211 1222 1223
Q ss_pred CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~t 158 (390)
...|+||..+|...... .+.. ..+..|+.-...+.+.+..+ ...+.+++++
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~ 136 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG 136 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46799999988643211 1222 34566776666666666543 1223444443
No 391
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.75 E-value=0.24 Score=45.90 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCC---hhhhh---CCCcEE
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENAL---TGMDLV 113 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~d---l~~al---~dADiV 113 (390)
+.+++.|+||+|++|..++..++..+. ++++++.+... ..++.+.. ...+... .-+| +.+++ ...|+|
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~-~~~~~~~-D~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGET-GCEPLRL-DVGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHh-CCeEEEe-cCCCHHHHHHHHHHhCCCCEE
Confidence 346899999999999999999998886 89999987521 11222111 0111111 1112 22333 347999
Q ss_pred EEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHh----CCCcEEEEec
Q 016424 114 IIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC----CPNATVNLIS 158 (390)
Q Consensus 114 Ii~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~----~p~a~iiv~t 158 (390)
|..+|..... ..+.. ..+..|..-...+.+.+.+. +..+.+++++
T Consensus 82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s 136 (245)
T PRK07060 82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVS 136 (245)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEc
Confidence 9998864321 12222 23445665555555555443 2235666665
No 392
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=94.74 E-value=1.4 Score=40.54 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=45.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC-CCC------hhhhhCCCcEEE
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ------LENALTGMDLVI 114 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~-t~d------l~~al~dADiVI 114 (390)
|+|.|+||+|+||..++..|...+....+++.+.+.... +. ..+++.+.. -+| +.+.+...|+||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999888875434677666654211 11 122222211 111 223456889999
Q ss_pred EcCCCCC
Q 016424 115 IPAGVPR 121 (390)
Q Consensus 115 i~ag~p~ 121 (390)
..+|...
T Consensus 73 ~~aG~~~ 79 (235)
T PRK09009 73 NCVGMLH 79 (235)
T ss_pred ECCcccc
Confidence 9998753
No 393
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.69 E-value=0.084 Score=54.47 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-...||.|||+ |++|..++..|...+. .+|.++..+.. .+..|........+.. -+++.+.+.+||+||.+.+
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~-~~I~V~nRt~~--ra~~La~~~~~~~~~~---~~~l~~~l~~aDiVI~aT~ 251 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAP-KQIMLANRTIE--KAQKITSAFRNASAHY---LSELPQLIKKADIIIAAVN 251 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEECCCHH--HHHHHHHHhcCCeEec---HHHHHHHhccCCEEEECcC
Confidence 34579999999 9999999999887763 58999998752 2233333211122222 2466788999999999987
Q ss_pred CCC
Q 016424 119 VPR 121 (390)
Q Consensus 119 ~p~ 121 (390)
.|.
T Consensus 252 a~~ 254 (414)
T PRK13940 252 VLE 254 (414)
T ss_pred CCC
Confidence 764
No 394
>PRK12320 hypothetical protein; Provisional
Probab=94.69 E-value=0.22 Score=54.64 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=63.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC---CCChhhhhCCCcEEEEcCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~---t~dl~~al~dADiVIi~ag 118 (390)
|||.|+||+|.+|+.++..|...+. ++..+|..... +.+ ..++.+.+ ...+.++++++|+||..++
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~----~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa 69 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALD----PRVDYVCASLRNPVLQELAGEADAVIHLAP 69 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----ccc----CCceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence 6999999999999999998888876 88889875311 111 11222111 1124566789999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
... .. ....|+.-...+.+.+.+.+. .++.+|
T Consensus 70 ~~~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S 101 (699)
T PRK12320 70 VDT--SA----PGGVGITGLAHVANAAARAGA--RLLFVS 101 (699)
T ss_pred cCc--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 521 11 113577777778887776653 455554
No 395
>PRK07035 short chain dehydrogenase; Provisional
Probab=94.68 E-value=0.52 Score=44.05 Aligned_cols=114 Identities=13% Similarity=0.122 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------h
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l 107 (390)
.++|.|+||+|++|..++..|...+. .+++.|.+. ......++.+.. ..+..+.. -+|. +++ +
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999988875 899999875 334444454322 12222211 1121 112 2
Q ss_pred CCCcEEEEcCCC-C-CCC--CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 016424 108 TGMDLVIIPAGV-P-RKP--GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~-p-~k~--g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~t 158 (390)
...|+||..+|. + ..+ ..+.. ..+..|..-...+.+.+.++ ...+.+++++
T Consensus 84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 144 (252)
T PRK07035 84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVA 144 (252)
T ss_pred CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 357999998874 2 122 22222 23455554444444444333 2345666665
No 396
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.68 E-value=0.56 Score=44.10 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------ 108 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------ 108 (390)
+.++|.|+||+|++|..++..|+..+. .+++++.+. .......+.+.. .++..+.. .+| ..+.++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 456899999999999999999998876 788888874 222333333221 23333221 122 222233
Q ss_pred -CCcEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 016424 109 -GMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (390)
Q Consensus 109 -dADiVIi~ag~p~k-~--g~~r---~~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tN 159 (390)
..|++|..+|.... + ..+. ...+..|+.-...+.+.+..+ ...+.+++++.
T Consensus 90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS 150 (258)
T PRK06935 90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIAS 150 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 57999999886431 1 1222 233455555444444444332 22455666654
No 397
>PLN02494 adenosylhomocysteinase
Probab=94.67 E-value=0.21 Score=52.32 Aligned_cols=95 Identities=22% Similarity=0.178 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH-HHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~-g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
....+|+|+|. |.+|..++..+...+. +|+.+|++... ..+.+.. ..+ .++.++++.+|+||.+.
T Consensus 252 LaGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~~G-----~~v------v~leEal~~ADVVI~tT 317 (477)
T PLN02494 252 IAGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALMEG-----YQV------LTLEDVVSEADIFVTTT 317 (477)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHhcC-----Cee------ccHHHHHhhCCEEEECC
Confidence 34679999999 9999999999987776 79999998722 2222111 111 13567899999999976
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCccc
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 164 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~ 164 (390)
|... ++. ...+....++|++++++-+.+.+
T Consensus 318 Gt~~---------------vI~--~e~L~~MK~GAiLiNvGr~~~eI 347 (477)
T PLN02494 318 GNKD---------------IIM--VDHMRKMKNNAIVCNIGHFDNEI 347 (477)
T ss_pred CCcc---------------chH--HHHHhcCCCCCEEEEcCCCCCcc
Confidence 5431 111 34455566899999998864443
No 398
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.67 E-value=0.15 Score=49.88 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhc--ccCCCeEEEEeCC-CChhhhhCCCcEEEE
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISH--MDTGAVVRGFLGQ-PQLENALTGMDLVII 115 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~--~~~~~~v~~~~~t-~dl~~al~dADiVIi 115 (390)
.+.||+.||. |-.-.|........+....++-+|+++ +...+..+.. .....++++.++. .+....+++.|+|++
T Consensus 120 ~p~rVaFIGS-GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGS-GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcC-CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 4569999998 877666555554444445788999998 4444444432 1123456665432 233446789999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE
Q 016424 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNL 156 (390)
Q Consensus 116 ~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv 156 (390)
++-+. |+.. --.++...+.++. |++.+++
T Consensus 199 AalVg----~~~e--------~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 199 AALVG----MDAE--------PKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -TT-S----------------SHHHHHHHHHHHS-TTSEEEE
T ss_pred hhhcc----cccc--------hHHHHHHHHHhhCCCCcEEEE
Confidence 87332 2211 2345666666665 6776543
No 399
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=94.65 E-value=0.12 Score=52.77 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-..++|.|||. |+||+.++..+...+. ++..||..... . . .... + .++++.++.||+|++..-
T Consensus 114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~---~---~----~~~~-~---~~L~ell~~sDiI~lh~P 176 (378)
T PRK15438 114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD---R---G----DEGD-F---RSLDELVQEADILTFHTP 176 (378)
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc---c---c----cccc-c---CCHHHHHhhCCEEEEeCC
Confidence 45679999999 9999999999987776 99999964211 0 0 0111 1 368888999999998643
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 119 VPR-KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 119 ~p~-k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
... .+-.++ .++. .+.+....|++++||++
T Consensus 177 Lt~~g~~~T~-~li~---------~~~l~~mk~gailIN~a 207 (378)
T PRK15438 177 LFKDGPYKTL-HLAD---------EKLIRSLKPGAILINAC 207 (378)
T ss_pred CCCCcccccc-cccC---------HHHHhcCCCCcEEEECC
Confidence 211 111121 1111 13344456888888886
No 400
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.65 E-value=0.18 Score=52.47 Aligned_cols=127 Identities=22% Similarity=0.238 Sum_probs=81.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH-HHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~-g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
++||+|+|- |.-|.+++..|...+. ++..+|.++.. .... ... ....+....|..+. +...++|+||..-|+
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~-~~~--~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi 79 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAA-QPL--LLEGIEVELGSHDD-EDLAEFDLVVKSPGI 79 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhh-hhh--hccCceeecCccch-hccccCCEEEECCCC
Confidence 789999999 9999999999998886 89999988722 1111 111 12344444444443 678999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEe-cCCCcccHHHHHHHHHHhCCC
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLI-SNPVNSTVPIAAEVFKKAGTY 178 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~--~p~a~iiv~-tNPvd~~t~i~ae~~~~~s~~ 178 (390)
|...-+ -.....+.++++-++--..+.. +| ||.+- ||==.++|.+++++++.. |+
T Consensus 80 ~~~~p~-v~~A~~~gi~i~~dieL~~r~~~~~p--~vaITGTNGKTTTTsli~~~l~~~-G~ 137 (448)
T COG0771 80 PPTHPL-VEAAKAAGIEIIGDIELFYRLSGEAP--IVAITGTNGKTTTTSLIAHLLKAA-GL 137 (448)
T ss_pred CCCCHH-HHHHHHcCCcEEeHHHHHHHhcCCCC--EEEEECCCchHHHHHHHHHHHHhc-CC
Confidence 864331 1122345566666665555543 34 44333 566667777777776654 44
No 401
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.64 E-value=0.16 Score=53.09 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
....++|+|+|. |.||..++..+...+. ++..+|++.... .+.. + ... . .++.++++.||+||++
T Consensus 251 ~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~---G~~--~----~~leell~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E---GYQ--V----VTLEDVVETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c---Cce--e----ccHHHHHhcCCEEEEC
Confidence 345679999999 9999999999988776 799999886322 2211 1 111 1 2467889999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160 (390)
Q Consensus 117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP 160 (390)
.|.+. ++. ...+....|++++++++-.
T Consensus 317 tGt~~---------------iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 317 TGNKD---------------IIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CCccc---------------ccC--HHHHhccCCCcEEEEcCCC
Confidence 65321 111 2355556789999999855
No 402
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.63 E-value=0.2 Score=51.79 Aligned_cols=127 Identities=18% Similarity=0.255 Sum_probs=75.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
.++|.|+|+ |+.|...+..|...+. ++.++|.+........|.... ..++.+.+..+ .+.+.++|+||.+.|+|
T Consensus 5 ~~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~--~gi~~~~g~~~-~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 5 NKKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMF--DGLVFYTGRLK-DALDNGFDILALSPGIS 78 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhcc--CCcEEEeCCCC-HHHHhCCCEEEECCCCC
Confidence 458999999 9999999999988886 889999876321122343321 23455444322 23457999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHH--HHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424 121 RKPGMTRDDLFNINAGIVR--TLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 121 ~k~g~~r~~l~~~N~~ii~--~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~ 175 (390)
...-. ......++++++. ++...+.+. .+..+|-+ ||==.+++.+++.+++..
T Consensus 79 ~~~p~-~~~a~~~~i~v~~~~~~~~~~~~~-~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 79 ERQPD-IEAFKQNGGRVLGDIELLADIVNR-RGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred CCCHH-HHHHHHcCCcEEEhHHHHHHhhhc-CCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 53221 1112235566553 333232221 12234444 454456777777777664
No 403
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.35 Score=45.21 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CC---Chhhhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENAL------ 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~---dl~~al------ 107 (390)
..++|.|+||+|++|+.++..++..+. ++++.+.+. +.....++.... .++..+.+ -+ ++.+.+
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999998876 789999876 233333343221 22333221 11 222222
Q ss_pred -CCCcEEEEcCCCC
Q 016424 108 -TGMDLVIIPAGVP 120 (390)
Q Consensus 108 -~dADiVIi~ag~p 120 (390)
...|+||..+|..
T Consensus 84 ~~~~d~li~~ag~~ 97 (258)
T PRK06949 84 AGTIDILVNNSGVS 97 (258)
T ss_pred cCCCCEEEECCCCC
Confidence 2579999998864
No 404
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.63 E-value=0.096 Score=56.57 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=83.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCCh----hhhhCCCcEEEEc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP 116 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl----~~al~dADiVIi~ 116 (390)
..+|.|+|. |.+|+.++..|...+. +++.+|.|+. .+..+.+... .-+.+ . .+|. ...+.+||.||++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~--~v~~~~~~g~-~v~~G-D-at~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDIS--AVNLMRKYGY-KVYYG-D-ATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHH--HHHHHHhCCC-eEEEe-e-CCCHHHHHhcCCccCCEEEEE
Confidence 469999999 9999999999988877 8899999862 2222333221 12222 1 1232 1346789999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHHHHHHHHhCCCCCCceeecccccHHHHH
Q 016424 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 195 (390)
Q Consensus 117 ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i~ae~~~~~s~~p~~kviG~t~Lds~R~~ 195 (390)
.+.+ ..|. .++..+++.+|+..++.- .||.+. +.+++.+ .+.++-=|...+.++-
T Consensus 472 ~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~~------~~L~~~G---a~~vv~e~~es~l~l~ 527 (601)
T PRK03659 472 CNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVEA------HELLQAG---VTQFSRETFSSALELG 527 (601)
T ss_pred eCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHHH------HHHHhCC---CCEEEccHHHHHHHHH
Confidence 6322 2333 455667788999866544 566543 3345543 2455433433344455
Q ss_pred HHHHHHhCCCCCCCc
Q 016424 196 TFVAEVLGLDPRDVD 210 (390)
Q Consensus 196 ~~la~~l~v~p~~V~ 210 (390)
...-..+|+++++++
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 555567787776653
No 405
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.61 E-value=0.13 Score=45.22 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-+.++|+|+|.+..+|.+++..|...+. ++.++|.+ |.|+++++++||+||.+.|
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg 80 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSP 80 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecC
Confidence 4567999999988999999999987664 66666643 2367788999999999988
Q ss_pred CC
Q 016424 119 VP 120 (390)
Q Consensus 119 ~p 120 (390)
.|
T Consensus 81 ~~ 82 (140)
T cd05212 81 KP 82 (140)
T ss_pred CC
Confidence 76
No 406
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.61 E-value=0.13 Score=48.95 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
||.|+|+ |++|+.++..|+..+ +.+|+++|.|.
T Consensus 1 kVlvvG~-GGlG~eilk~La~~G-vg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMG-FGQIHVIDMDT 33 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC-CCeEEEEeCCE
Confidence 6899999 999999999999988 47899999985
No 407
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.61 E-value=0.22 Score=48.96 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=48.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hHHHHHHHhcccCCCeEEEEeCC--CChhhhhCCCc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLGQ--PQLENALTGMD 111 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~g~a~DL~~~~~~~~v~~~~~t--~dl~~al~dAD 111 (390)
.+..++.|+|| |+.+.+++..++..+ +.+|.+++++. ++..+.++.+.. ...+....-. ..+.+++.++|
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g-~~~i~i~nRt~~~~~ka~~la~~~~~~~-~~~~~~~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFAEALASAD 198 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEeCCccHHHHHHHHHHHhhhcc-CceEEEechhhhhhhhhhcccCC
Confidence 34568999999 999999888887765 46899999984 233333443221 2223332100 11334678899
Q ss_pred EEEEcC
Q 016424 112 LVIIPA 117 (390)
Q Consensus 112 iVIi~a 117 (390)
+||.+.
T Consensus 199 ivINaT 204 (288)
T PRK12749 199 ILTNGT 204 (288)
T ss_pred EEEECC
Confidence 999975
No 408
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.21 Score=52.25 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHH-hcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI-SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL-~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
-.++||.|+|+ |+.|.+++..|...+. ++..+|.+... ..++ .. ..++.+.+..+ .+.+.++|+||.+.
T Consensus 13 ~~~~~v~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~--~~~~l~~----~gi~~~~~~~~-~~~~~~~d~vV~Sp 82 (473)
T PRK00141 13 ELSGRVLVAGA-GVSGRGIAAMLSELGC--DVVVADDNETA--RHKLIEV----TGVADISTAEA-SDQLDSFSLVVTSP 82 (473)
T ss_pred ccCCeEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCChHH--HHHHHHh----cCcEEEeCCCc-hhHhcCCCEEEeCC
Confidence 34568999999 9999999999988886 89999975422 1222 22 13333333222 35578999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----hC-CCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAK-----CC-PNATVNLI--SNPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~-----~~-p~a~iiv~--tNPvd~~t~i~ae~~~~~ 175 (390)
|+|...-+ .......+++++.++.-.... +. |. .+|-+ ||==.+++.+++.+++..
T Consensus 83 gi~~~~p~-~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~-~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 83 GWRPDSPL-LVDAQSQGLEVIGDVELAWRLDQAGVFGEPR-TWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred CCCCCCHH-HHHHHHCCCceeeHHHHHHHhhhhhccCCCC-CEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 99854321 222335567777666643322 22 32 24444 454456777787877664
No 409
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.60 E-value=0.11 Score=51.03 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-+..+|+|||.|+-||.+++.+|...+. .+.+++. .|.|+.+.++.||+||.+.|
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~a--tVt~~hs-----------------------~t~~l~~~~~~ADIVV~avG 210 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAGA--TVTICHS-----------------------KTRDLAAHTRQADIVVAAVG 210 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEecC-----------------------CCCCHHHHhhhCCEEEEcCC
Confidence 4567999999966779999999987764 5554321 14578889999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV 161 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPv 161 (390)
.|. .- .. ....|++++|.++ |+.
T Consensus 211 ~~~---~i------------~~-----~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 211 KRN---VL------------TA-----DMVKPGATVIDVGMNRD 234 (285)
T ss_pred CcC---cc------------CH-----HHcCCCCEEEEcccccc
Confidence 553 11 00 2235889988885 653
No 410
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=94.56 E-value=1.4 Score=41.71 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA------- 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a------- 106 (390)
+.+++.|+||+|++|..++..|+..+. ++++.|.+. ......++.... .++..+.. -+|. +++
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345899999999999999999988875 788888876 233334443321 23333221 1221 112
Q ss_pred hCCCcEEEEcCCCCC-CC--CCCHH---HHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 016424 107 LTGMDLVIIPAGVPR-KP--GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISNPV 161 (390)
Q Consensus 107 l~dADiVIi~ag~p~-k~--g~~r~---~l~~~N~~ii----~~ia~~I~~~~p~a~iiv~tNPv 161 (390)
+...|++|..+|... .+ ..+.. ..+..|..-. +.+.+.+.+ ...+.|++++...
T Consensus 85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~ 148 (265)
T PRK07097 85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM 148 (265)
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence 244799999988632 11 11221 2234454333 333343433 3456677776543
No 411
>PRK12743 oxidoreductase; Provisional
Probab=94.55 E-value=0.98 Score=42.45 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=63.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCCh---hhh-------h
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L 107 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~a-------l 107 (390)
.+|.|+||+|++|..++..|+..+. ++++.+... ......++.... ..+..+.. -+|. +++ +
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999998886 777765433 223334443322 23333221 1221 111 2
Q ss_pred CCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 016424 108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISN 159 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~----~~~p~a~iiv~tN 159 (390)
...|+||..+|..... ..+. ...+..|..-...+.+.+. +....+.+++++.
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS 140 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS 140 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence 3579999998864321 1122 2234455554444444433 3333466777654
No 412
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.55 E-value=0.12 Score=52.03 Aligned_cols=73 Identities=25% Similarity=0.280 Sum_probs=44.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEE-EEeCCchHHH-HHH-HhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGV-TAD-ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~-L~Di~~~~g~-a~D-L~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
+||+|+||+|.+|..++..|...|.+ +|+ +++.+...+. ..+ ..+......+.. . ..|..+.++++|+|+++.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~al 76 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLAL 76 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECC
Confidence 58999999999999999999877644 555 7787642221 111 221111112222 1 124444446999999986
No 413
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=94.54 E-value=0.24 Score=47.92 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccC--CCeEEEEeCCCChhhhhCCCcEEEEc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~--~~~v~~~~~t~dl~~al~dADiVIi~ 116 (390)
++||+|.||+|.+|+.+...+.+.+-..=..-+|...-.-.-.|..+... ...+-+ +.|+.....++|++|=.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v---~~~~~~~~~~~DV~IDF 76 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV---TDDLLLVKADADVLIDF 76 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCcee---ecchhhcccCCCEEEEC
Confidence 68999999999999999999998884333445666541112223332221 122332 23556778899998863
No 414
>PRK08324 short chain dehydrogenase; Validated
Probab=94.54 E-value=0.53 Score=51.52 Aligned_cols=113 Identities=21% Similarity=0.292 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------- 107 (390)
.++|.|+||+|++|..++..|+..+. +|+++|.+. ......++... ..+..+.. -+| ..+++
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876 899999986 22333334321 12222211 122 22223
Q ss_pred CCCcEEEEcCCCCCCCC---CCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g---~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t 158 (390)
.+.|+||..+|...... .+.. ..+..|..- ++...+.+.+....+.+++++
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 36899999998643221 2222 223444433 344444444433346666664
No 415
>PRK06701 short chain dehydrogenase; Provisional
Probab=94.53 E-value=1.2 Score=43.18 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh----
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL---- 107 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al---- 107 (390)
.+.++|.|+||+|++|..++..++..+. ++++++.+. .......+... ..++..+.. -+| +.+.+
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 3457899999999999999999998876 889999875 22233333221 123333221 112 22222
Q ss_pred ---CCCcEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 016424 108 ---TGMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 159 (390)
Q Consensus 108 ---~dADiVIi~ag~p~--k~--g~~r---~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~tN 159 (390)
...|+||..+|... .+ ..+. ...+..|+.-...+.+.+..+ .+.+.+|++|.
T Consensus 120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 35799999988532 11 1222 234667777777777776654 34566666654
No 416
>PRK08628 short chain dehydrogenase; Provisional
Probab=94.51 E-value=1.2 Score=41.79 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------- 108 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~------- 108 (390)
..+|.|+||+|++|..++..|+..+. ++++.+.++ ......++.... .++..+.. -++ +..+++
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 45899999999999999999998886 788888876 223334443322 22333221 122 223332
Q ss_pred CCcEEEEcCCCCCCCCC--CH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424 109 GMDLVIIPAGVPRKPGM--TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLIS 158 (390)
Q Consensus 109 dADiVIi~ag~p~k~g~--~r---~~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t 158 (390)
..|+||..+|....... +. ...+..|......+.+.+..+- ..+.+++++
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s 139 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS 139 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence 57999999986432221 11 2345566655555555544322 234455443
No 417
>PRK06940 short chain dehydrogenase; Provisional
Probab=94.50 E-value=0.7 Score=44.32 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=58.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------CC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------TG 109 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------~d 109 (390)
.|++||+++|++|..++..|. .+. +|++.|.+. ......++.+. ..++..+.. -+| ..+++ ..
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~ 76 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGP 76 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence 355555444899999999885 554 899999876 22333344322 123332221 122 22222 35
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 016424 110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS 158 (390)
Q Consensus 110 ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~-~p~a~iiv~t 158 (390)
.|++|..+|.... ..+-...+..|+.-...+.+.+... .+++.+++++
T Consensus 77 id~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~is 125 (275)
T PRK06940 77 VTGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIA 125 (275)
T ss_pred CCEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 8999999987521 2233345666655544444444433 1234445544
No 418
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.50 E-value=0.09 Score=52.61 Aligned_cols=71 Identities=23% Similarity=0.438 Sum_probs=46.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
++||+|+||+|.+|..++.+|...+ ...||..+-.+...+...++. ...+.... . + ..+++++|+||.+.|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~----g~~i~v~d-~-~-~~~~~~vDvVf~A~g 72 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFK----GKELKVED-L-T-TFDFSGVDIALFSAG 72 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeC----CceeEEee-C-C-HHHHcCCCEEEECCC
Confidence 4799999999999999999998854 345777775543222222221 12344321 1 2 245789999999864
No 419
>PRK05599 hypothetical protein; Provisional
Probab=94.50 E-value=0.61 Score=43.82 Aligned_cols=115 Identities=13% Similarity=0.200 Sum_probs=64.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC----------hhhhhC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENALT 108 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d----------l~~al~ 108 (390)
|-+.|+||++++|..++..+.+ + ..+++.+.++ +...+.++..... ..+..+.. -+| ..+.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g--~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-G--EDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-C--CEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 3578999999999999998874 5 4899999876 3445555643221 12222211 112 112234
Q ss_pred CCcEEEEcCCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424 109 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP 160 (390)
Q Consensus 109 dADiVIi~ag~p~k~g---~~r---~~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~tNP 160 (390)
.-|++|..+|...... .+. .+....| ..+.+.+.+.+.+...++.|+++|--
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~ 138 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSI 138 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 6799999988643211 111 1222223 23334455556554445777777643
No 420
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.50 E-value=0.13 Score=54.63 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
..++|+|||. |.+|+.++..+...+. +++.||.......+.++ .++.. ++++.++.||+|++....
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~ell~~aDiV~l~lP~ 204 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDELLARADFITLHTPL 204 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHHHhhCCEEEEccCC
Confidence 4679999999 9999999999987776 89999985422222211 12221 478899999999998532
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
.. .+..++- .+.+....|++++|+++-
T Consensus 205 t~-----------~t~~li~--~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 205 TP-----------ETRGLIG--AEELAKMKPGVRIINCAR 231 (526)
T ss_pred Ch-----------HhhcCcC--HHHHhcCCCCeEEEECCC
Confidence 11 1111221 234444568899999863
No 421
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.49 E-value=0.1 Score=51.58 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
||.|+|+ |++|+.++..|+..+ +.+|.|+|-+.
T Consensus 1 kVLIvGa-GGLGs~vA~~La~aG-Vg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLGWG-VRHITFVDSGK 33 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC-CCeEEEECCCE
Confidence 7899999 999999999999887 46899999764
No 422
>PRK08862 short chain dehydrogenase; Provisional
Probab=94.46 E-value=1.2 Score=41.69 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEe-CCCC---hhh-------hh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------AL 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~-~t~d---l~~-------al 107 (390)
.+.+.|+||++++|..++..|+..+. +|++.+.+. ......++.... .++..+. ..+| .++ .+
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45889999999999999999999886 899999876 233334443221 2222221 1112 211 12
Q ss_pred C-CCcEEEEcCCCCCCCC----CCHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 016424 108 T-GMDLVIIPAGVPRKPG----MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 108 ~-dADiVIi~ag~p~k~g----~~r~~---l~~~N~----~ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
. .-|++|..+|....++ .+..+ .+..|. .+.+.+.+.+.+...++.|+++|.
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 3 6899999987432221 22222 222232 334455555655444567777763
No 423
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.46 E-value=0.13 Score=51.19 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
||.|||+ |++|..++..|+..| +.+|.|+|.|.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~G-vg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTG-FGEIHIIDLDT 33 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhc-CCeEEEEcCCC
Confidence 6899999 999999999999888 47899999874
No 424
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.45 E-value=0.25 Score=48.34 Aligned_cols=76 Identities=13% Similarity=0.351 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hHHHHHHHhcccCCCeEEEEe--CCCChhhhhCCCcE
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDL 112 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~g~a~DL~~~~~~~~v~~~~--~t~dl~~al~dADi 112 (390)
+.+++.|+|| |++|.+++..|+..+ +.+|+++|++. +...+.++.+......+.... ...++.++++.+|+
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G-~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDG-AKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 4568999999 999999999888877 45799999974 233444453321111222111 11234456778999
Q ss_pred EEEcC
Q 016424 113 VIIPA 117 (390)
Q Consensus 113 VIi~a 117 (390)
||.+.
T Consensus 203 lINaT 207 (289)
T PRK12548 203 LVNAT 207 (289)
T ss_pred EEEeC
Confidence 99974
No 425
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=94.45 E-value=0.13 Score=52.48 Aligned_cols=93 Identities=22% Similarity=0.221 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-..++|+|||. |+||+.++..+...+. +++.||..... . . .... + .++++.++.||+|++...
T Consensus 114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~-----~--~~~~-~---~~l~ell~~aDiV~lh~P 176 (381)
T PRK00257 114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A-----E--GDGD-F---VSLERILEECDVISLHTP 176 (381)
T ss_pred cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c-----c--cCcc-c---cCHHHHHhhCCEEEEeCc
Confidence 45679999999 9999999999987776 99999975311 0 0 0111 1 257888999999999753
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 119 VPRK-PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 119 ~p~k-~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
.-.. +..++ .++ | .+.+....|++++||.+
T Consensus 177 lt~~g~~~T~-~li--~-------~~~l~~mk~gailIN~a 207 (381)
T PRK00257 177 LTKEGEHPTR-HLL--D-------EAFLASLRPGAWLINAS 207 (381)
T ss_pred CCCCcccccc-ccC--C-------HHHHhcCCCCeEEEECC
Confidence 2110 00111 111 1 13444557899999886
No 426
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.41 E-value=0.16 Score=47.95 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
+.+++.|+||+|++|..++..|+..+. +|++.|.+.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999998886 799999876
No 427
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=94.39 E-value=1.1 Score=42.11 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEe-CCCChh---hh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------ 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~-~t~dl~---~a------ 106 (390)
+.+++.|+||+|++|..++..|...+. .+++.+.+. ......++.+.. .++..+. .-+|.. +.
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998885 677766643 222333443321 2232221 112221 11
Q ss_pred -hCCCcEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 016424 107 -LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 107 -l~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~----ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
+...|++|..+|.+... ..+.. ..+..|+. ..+.+.+.+.+....+.+++++-
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 23579999998864321 12222 23455643 33445555555555566666653
No 428
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.39 E-value=0.17 Score=49.99 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-..++|.|||- |.||+.++..++..+. +++.||..... + ... ..+ .++++.++.||+|++...
T Consensus 120 L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~---~~~-~~~---~~l~ell~~aDiv~~~lp 182 (303)
T PRK06436 120 LYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------D---GIS-SIY---MEPEDIMKKSDFVLISLP 182 (303)
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------c---Ccc-ccc---CCHHHHHhhCCEEEECCC
Confidence 44679999999 9999999987776666 89999975311 0 011 111 367899999999999852
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCccc
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST 164 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~~ 164 (390)
.. + .+-.++- .+.+....|++++||++ .++|.-
T Consensus 183 ~t--~---------~T~~li~--~~~l~~mk~ga~lIN~sRG~~vd~~ 217 (303)
T PRK06436 183 LT--D---------ETRGMIN--SKMLSLFRKGLAIINVARADVVDKN 217 (303)
T ss_pred CC--c---------hhhcCcC--HHHHhcCCCCeEEEECCCccccCHH
Confidence 11 1 1111111 34444556899999996 555543
No 429
>PRK14852 hypothetical protein; Provisional
Probab=94.39 E-value=0.11 Score=58.53 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----h--------------H--HHHHHHhcccCCCeEEEEeC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T--------------P--GVTADISHMDTGAVVRGFLG 99 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~--------------~--g~a~DL~~~~~~~~v~~~~~ 99 (390)
..||.|||+ |++|+.++..|+..|+ .+|.|+|-|. + + ..+..+.++....+|+.+..
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGV-G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGI-GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCC-CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 459999999 9999999999999985 7899999874 1 1 11223344443456666532
Q ss_pred ---CCChhhhhCCCcEEEEcC
Q 016424 100 ---QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 100 ---t~dl~~al~dADiVIi~a 117 (390)
.++..+-++++|+||-+.
T Consensus 410 ~I~~en~~~fl~~~DiVVDa~ 430 (989)
T PRK14852 410 GVAAETIDAFLKDVDLLVDGI 430 (989)
T ss_pred CCCHHHHHHHhhCCCEEEECC
Confidence 234445578999999754
No 430
>PRK12746 short chain dehydrogenase; Provisional
Probab=94.38 E-value=1.7 Score=40.58 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEE-eCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh---hhhh------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------ 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~-Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl---~~al------ 107 (390)
+++|.|+||+|++|+.++..|...+. ++.+. +.+. ......++... ...+..+.. -+|. .+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 36899999999999999999888775 66664 3433 22223333221 122332221 1222 1222
Q ss_pred -------CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 016424 108 -------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 158 (390)
Q Consensus 108 -------~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~t 158 (390)
.+.|+||.++|...... .+. ...+..|+.-...+.+.+.++. ..+.++++|
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~s 146 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINIS 146 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 26899999998643211 121 2234566665555555555442 234555554
No 431
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.38 E-value=0.12 Score=50.73 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-..++|+|||.||-||.+++.+|...+. ++.++... |.++.+.+++||+||.+.|
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg 210 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIG 210 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecC
Confidence 4568999999999999999999988775 67666311 2256788999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CC
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NP 160 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NP 160 (390)
.|.- -+.++ ..|++++|-++ |+
T Consensus 211 ~~~~---v~~~~-----------------ik~GavVIDvgin~ 233 (284)
T PRK14179 211 RGHF---VTKEF-----------------VKEGAVVIDVGMNR 233 (284)
T ss_pred cccc---CCHHH-----------------ccCCcEEEEeccee
Confidence 7752 11111 56888888775 55
No 432
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.38 E-value=1.8 Score=40.06 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
..++.|+|++|++|+.++..+...+. ++++.|.+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999998888875 789999876
No 433
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.36 E-value=0.29 Score=50.91 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=77.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
..||.|+|. |..|.+++..|...+. ++..+|.+.. .....+|... .+..+.+. +..+.+.++|+||.+.
T Consensus 14 ~~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~~~-~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKEL----GVKLVLGE-NYLDKLDGFDVIFKTP 85 (458)
T ss_pred CCeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhC----CCEEEeCC-CChHHhccCCEEEECC
Confidence 469999999 9999999999998886 8999998752 1122334332 23333332 2246688999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCcccHHHHHHHHHHh
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t--NPvd~~t~i~ae~~~~~ 175 (390)
|+|...-+ .......+++++.++- .+.+.. +..+|-+| |==.+++.+++.++...
T Consensus 86 gi~~~~p~-~~~a~~~~i~i~s~~e-~~~~~~-~~~vIaITGTnGKTTT~~ll~~iL~~~ 142 (458)
T PRK01710 86 SMRIDSPE-LVKAKEEGAYITSEME-EFIKYC-PAKVFGVTGSDGKTTTTTLIYEMLKEE 142 (458)
T ss_pred CCCCCchH-HHHHHHcCCcEEechH-Hhhhhc-CCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 98754322 2222356677776553 222333 23344454 44446667777777653
No 434
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.36 E-value=0.085 Score=52.94 Aligned_cols=72 Identities=21% Similarity=0.361 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
+++||+|+||+|.+|..+..+|...+ ...+|.++-..+..|.-..+.. ..+.+.. .+ .++++++|+|+++.+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~~--~~-~~~~~~vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVRE--VD-SFDFSQVQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEee--CC-hHHhcCCCEEEEcCC
Confidence 56899999999999999999998643 3567777755442222122221 2233321 22 234789999999763
No 435
>PRK08264 short chain dehydrogenase; Validated
Probab=94.33 E-value=0.92 Score=41.88 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeC----CCChhhhhC---CCcE
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALT---GMDL 112 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~----t~dl~~al~---dADi 112 (390)
+.++|.|+||+|++|+.++..|...+. .++++++.+..... + . ...+..+.+ .+++.+.++ ..|+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~--~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 76 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT--D---L--GPRVVPLQLDVTDPASVAAAAEAASDVTI 76 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh--h---c--CCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence 346899999999999999999987763 36888998752111 1 1 112222211 122223333 5799
Q ss_pred EEEcCCCCCCC----CCCHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 016424 113 VIIPAGVPRKP----GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 160 (390)
Q Consensus 113 VIi~ag~p~k~----g~~r~---~l~~~N~~ii~~ia~~I~~~---~p~a~iiv~tNP 160 (390)
||..+|.+..+ ..+.. +.+..|..-...+.+.+.+. ...+.+++++..
T Consensus 77 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 134 (238)
T PRK08264 77 LVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSV 134 (238)
T ss_pred EEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence 99999873221 12222 23455665555555554432 234566666543
No 436
>PRK08263 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.17 Score=48.30 Aligned_cols=34 Identities=15% Similarity=-0.058 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
+.|.|+||+|++|+.++..|+.++. ++++.|.+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 37 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDT 37 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence 4789999999999999999988875 789999875
No 437
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=94.28 E-value=0.16 Score=51.52 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=46.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHH-hCCC-CcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~-~~~~-~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
+||+|+||+|.||+.+...|. ...+ +.+++++......|....+.. ..+.+.. .++ .+++++.|+|+.++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~----~~~~v~~-~~~-~~~~~~vDivffa~g 73 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGG----TTGTLQD-AFD-IDALKALDIIITCQG 73 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCC----CcceEEc-Ccc-cccccCCCEEEEcCC
Confidence 489999999999999999888 4453 578999987652222121211 1223221 222 247899999999875
No 438
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.27 E-value=0.12 Score=52.51 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE-eCCCChhhhhCCCcEEEEc
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIP 116 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~-~~t~dl~~al~dADiVIi~ 116 (390)
..++.||+|||+ |.+|...+..+...+. ++..+|.+... ...+.... ...+... ....++.+.++++|+||.+
T Consensus 164 ~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~--~~~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 164 GVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDR--LRQLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHhc-CceeEeccCCHHHHHHHHccCCEEEEc
Confidence 346678999999 9999999999988775 79999987521 11122111 1122211 1123567889999999999
Q ss_pred CCCCC
Q 016424 117 AGVPR 121 (390)
Q Consensus 117 ag~p~ 121 (390)
.+.|-
T Consensus 238 ~~~~g 242 (370)
T TIGR00518 238 VLIPG 242 (370)
T ss_pred cccCC
Confidence 86643
No 439
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.26 E-value=0.14 Score=50.21 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-..++|+|||.|.-||.+++.+|...+- .+.++.. -|.|+++.++.||+||.+.|
T Consensus 153 l~Gk~vvViGrS~iVGkPla~lL~~~~a--TVtichs-----------------------~T~~l~~~~~~ADIvIsAvG 207 (287)
T PRK14173 153 LAGKEVVVVGRSNIVGKPLAALLLREDA--TVTLAHS-----------------------KTQDLPAVTRRADVLVVAVG 207 (287)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEecC
Confidence 4567999999988999999999987663 4543321 14577888999999999999
Q ss_pred CCC
Q 016424 119 VPR 121 (390)
Q Consensus 119 ~p~ 121 (390)
.|.
T Consensus 208 kp~ 210 (287)
T PRK14173 208 RPH 210 (287)
T ss_pred CcC
Confidence 774
No 440
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=94.24 E-value=0.9 Score=41.93 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=62.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeCC-CC---hhhhh-------
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQ-PQ---LENAL------- 107 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~t-~d---l~~al------- 107 (390)
++|.|+|++|++|+.++..|...+. .+++.|.+.. ......+.+ ...++..+... +| +.+++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGNDCAKDWFEEYGF--TEDQVRLKELDVTDTEECAEALAEIEEEE 78 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhhc--cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999988875 8899998742 111111211 12234333211 22 22222
Q ss_pred CCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHH----HHHHhCCCcEEEEecC
Q 016424 108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCE----GIAKCCPNATVNLISN 159 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~----~I~~~~p~a~iiv~tN 159 (390)
...|+||..+|..... ..+.. ..+..|+.-...+.+ .+.+. +.+.+++++.
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss 139 (245)
T PRK12824 79 GPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISS 139 (245)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECC
Confidence 3579999998864321 11222 234455555444433 33333 4556777764
No 441
>PRK07985 oxidoreductase; Provisional
Probab=94.24 E-value=1.4 Score=42.81 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeC-CCCh----------hh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLG-QPQL----------EN 105 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~-t~dl----------~~ 105 (390)
.+++.|+||+|++|..++..|+..+. ++++.+.+. .......+.+. ..++..+.. -+|. .+
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC--GRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998886 788887653 11222222221 122322221 1221 12
Q ss_pred hhCCCcEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 016424 106 ALTGMDLVIIPAGVPR--KP--GMTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLISN 159 (390)
Q Consensus 106 al~dADiVIi~ag~p~--k~--g~~r~---~l~~~N~~ii~~ia~~I~~~~-p~a~iiv~tN 159 (390)
.+...|++|..+|... .+ ..+.. ..+..|+.-...+.+.+..+- .++.||++|-
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS 186 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS 186 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence 2345799999988632 11 22333 335566655555555554432 3466777663
No 442
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=94.23 E-value=0.17 Score=49.24 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=43.9
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 46 VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
|||. |.+|.+++..|...+. +|.+||++... +.++.... +.. ++++.+++++||+||++.
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITML 60 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence 5898 9999999999988886 89999997621 22233211 122 245678999999999986
No 443
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.21 E-value=0.31 Score=50.24 Aligned_cols=91 Identities=25% Similarity=0.212 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
....+|+|+|. |.+|..++..+...+. ++..+|.+.... .+.. . .. +. .+++++++++|+||.+.
T Consensus 193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~~----~-G~--~v----~~leeal~~aDVVItaT 258 (406)
T TIGR00936 193 IAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEAAM----D-GF--RV----MTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHHh----c-CC--Ee----CCHHHHHhcCCEEEECC
Confidence 45679999999 9999999999987775 799999887321 1111 1 11 11 13467899999999876
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNP 160 (390)
|.+ .++.. ..+....+.+++++++-.
T Consensus 259 G~~---------------~vI~~--~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 GNK---------------DVIRG--EHFENMKDGAIVANIGHF 284 (406)
T ss_pred CCH---------------HHHHH--HHHhcCCCCcEEEEECCC
Confidence 532 12221 233444578899988754
No 444
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.20 E-value=0.33 Score=50.27 Aligned_cols=92 Identities=21% Similarity=0.170 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHH-HHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g-~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
....+|+|+|. |.+|..++..+...+. +++.+|++..+. .+.. . ...+ .++.++++++|+||.+.
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~----~-G~~v------~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM----D-GFRV------MTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh----c-CCEe------cCHHHHHhCCCEEEECC
Confidence 35679999999 9999999999988876 899999987322 1111 1 1121 13568899999999886
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv 161 (390)
|.+. ++. ...+....+++++++++-+.
T Consensus 276 G~~~---------------vI~--~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GNKD---------------VIT--AEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CCHH---------------HHH--HHHHhcCCCCCEEEEcCCCC
Confidence 5321 111 12344446788999987554
No 445
>PRK07877 hypothetical protein; Provisional
Probab=94.19 E-value=0.14 Score=56.48 Aligned_cols=75 Identities=20% Similarity=0.358 Sum_probs=52.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc-----hHH---------------HHHHHhcccCCCeEEEEeC-
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPG---------------VTADISHMDTGAVVRGFLG- 99 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~-----~~g---------------~a~DL~~~~~~~~v~~~~~- 99 (390)
..||.|+|+ | +|++++..|+..+.+.+|.|+|-|. +.- .+..+..+....+|+.+..
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 459999999 8 9999999999999778999999875 111 1222333333456666542
Q ss_pred --CCChhhhhCCCcEEEEcC
Q 016424 100 --QPQLENALTGMDLVIIPA 117 (390)
Q Consensus 100 --t~dl~~al~dADiVIi~a 117 (390)
.+++.+-++++|+||-+.
T Consensus 185 i~~~n~~~~l~~~DlVvD~~ 204 (722)
T PRK07877 185 LTEDNVDAFLDGLDVVVEEC 204 (722)
T ss_pred CCHHHHHHHhcCCCEEEECC
Confidence 134555678999999875
No 446
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.18 E-value=0.2 Score=46.13 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=68.7
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHH-HHHhCCCCcEEEEEeCCc-hHHHHHHHhcccCCCeEEEEeCCCChhhhhC--CCcE
Q 016424 37 GGAAGFKVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDL 112 (390)
Q Consensus 37 ~~~~~~KI~VIGa~G~vG~~~a~-~l~~~~~~~eL~L~Di~~-~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~--dADi 112 (390)
+..++.+|.|||+ |++|.+++. ....+.-..-+..+|+++ ..| ... ..+.++. -++++.-++ |.|+
T Consensus 80 g~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG------~~~--~~v~V~~-~d~le~~v~~~dv~i 149 (211)
T COG2344 80 GQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVG------TKI--GDVPVYD-LDDLEKFVKKNDVEI 149 (211)
T ss_pred CCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhC------ccc--CCeeeec-hHHHHHHHHhcCccE
Confidence 4566789999999 999999984 555455566788999986 222 111 1233321 246666666 8888
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCcccH
Q 016424 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 165 (390)
Q Consensus 113 VIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd~~t 165 (390)
.|+|. | .....++++.+.+.+=++ |+++| |+.+.+
T Consensus 150 aiLtV--P--------------a~~AQ~vad~Lv~aGVkG-IlNFt-Pv~l~~ 184 (211)
T COG2344 150 AILTV--P--------------AEHAQEVADRLVKAGVKG-ILNFT-PVRLQV 184 (211)
T ss_pred EEEEc--c--------------HHHHHHHHHHHHHcCCce-EEecc-ceEecC
Confidence 88885 2 234668888888888888 46776 777664
No 447
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.17 E-value=0.15 Score=50.08 Aligned_cols=58 Identities=19% Similarity=0.395 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-+.++|+|||.|.-||.+++.+|...+- .+.+++. .|.++.+.++.||+||.+.|
T Consensus 156 l~Gk~vvViGrS~iVG~Pla~lL~~~~a--tVt~chs-----------------------~t~~l~~~~~~ADIvI~AvG 210 (284)
T PRK14190 156 ISGKHVVVVGRSNIVGKPVGQLLLNENA--TVTYCHS-----------------------KTKNLAELTKQADILIVAVG 210 (284)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEeC-----------------------CchhHHHHHHhCCEEEEecC
Confidence 4568999999999999999999987763 5555431 13578888999999999998
Q ss_pred CCC
Q 016424 119 VPR 121 (390)
Q Consensus 119 ~p~ 121 (390)
.|.
T Consensus 211 ~p~ 213 (284)
T PRK14190 211 KPK 213 (284)
T ss_pred CCC
Confidence 775
No 448
>PRK06114 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.55 Score=44.14 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=49.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh------
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------ 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al------ 107 (390)
.+.+.|+||+|++|..++..|+..+. ++++.|.+. ......++.+.. .++..+.. -+| ..+++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999998886 889999864 233344454322 22222221 112 22222
Q ss_pred -CCCcEEEEcCCCCC
Q 016424 108 -TGMDLVIIPAGVPR 121 (390)
Q Consensus 108 -~dADiVIi~ag~p~ 121 (390)
..-|++|..+|...
T Consensus 84 ~g~id~li~~ag~~~ 98 (254)
T PRK06114 84 LGALTLAVNAAGIAN 98 (254)
T ss_pred cCCCCEEEECCCCCC
Confidence 23599999998643
No 449
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.15 E-value=0.23 Score=49.64 Aligned_cols=93 Identities=27% Similarity=0.373 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
..+.+++.|||. |.||+.++..++-.+. +|+.||.........++ ..+. .++.+.++.||+|++..
T Consensus 143 ~l~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~~~~~~~~-------~~~y----~~l~ell~~sDii~l~~ 208 (324)
T COG1052 143 DLRGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPNPEAEKEL-------GARY----VDLDELLAESDIISLHC 208 (324)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCChHHHhhc-------Ccee----ccHHHHHHhCCEEEEeC
Confidence 355789999999 9999999999994454 99999987531111111 1222 13789999999999986
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 118 G-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 118 g-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
. .|. + ..++ | .+.++...|++++||.+
T Consensus 209 Plt~~----T-~hLi--n-------~~~l~~mk~ga~lVNta 236 (324)
T COG1052 209 PLTPE----T-RHLI--N-------AEELAKMKPGAILVNTA 236 (324)
T ss_pred CCChH----H-hhhc--C-------HHHHHhCCCCeEEEECC
Confidence 2 221 1 1111 1 23455567889999886
No 450
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.15 E-value=0.18 Score=46.52 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
+++|.|+||+|++|+.++..|+..+. +|+++|.+.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP 35 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence 35799999999999999999998876 899999876
No 451
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.14 E-value=0.098 Score=52.68 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCC-CCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~-~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.+.+||+|+||+|.+|..+...|...+ ...+|.++......|.-.+.. ...+..- ..+ .+++.++|+||++.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~----~~~~~v~--~~~-~~~~~~~D~vf~a~ 77 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFE----GRDYTVE--ELT-EDSFDGVDIALFSA 77 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeec----CceeEEE--eCC-HHHHcCCCEEEECC
Confidence 345799999999999999998888754 356777665543222212121 1233321 123 35689999999987
Q ss_pred C
Q 016424 118 G 118 (390)
Q Consensus 118 g 118 (390)
+
T Consensus 78 p 78 (344)
T PLN02383 78 G 78 (344)
T ss_pred C
Confidence 4
No 452
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.10 E-value=0.14 Score=54.58 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh-----CCC-----CcEEEEEeCCc--hHHHHHHHhccc--CCCeEEEEeCCCChhhh
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKI-----NPL-----VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENA 106 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~-----~~~-----~~eL~L~Di~~--~~g~a~DL~~~~--~~~~v~~~~~t~dl~~a 106 (390)
..||++.|| |..|..++.+|.. .++ -..++++|.+. ..+...+|.+.. +..+.. ...++.++
T Consensus 321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~---~~~~L~e~ 396 (581)
T PLN03129 321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE---PGASLLEA 396 (581)
T ss_pred hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc---cCCCHHHH
Confidence 479999999 9999999976654 243 25899999986 111100021110 000111 12579999
Q ss_pred hCC--CcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424 107 LTG--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (390)
Q Consensus 107 l~d--ADiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv 161 (390)
+++ +|++|=+.+.|-- +-.++.+.|.++|++.+|+-.|||.
T Consensus 397 v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~~rPIIFaLSNPt 439 (581)
T PLN03129 397 VKAIKPTVLIGLSGVGGT--------------FTKEVLEAMASLNERPIIFALSNPT 439 (581)
T ss_pred HhccCCCEEEEecCCCCC--------------CCHHHHHHHHhcCCCCEEEECCCCC
Confidence 999 9999987665421 2347888888999999999999998
No 453
>PRK07109 short chain dehydrogenase; Provisional
Probab=94.10 E-value=1.4 Score=43.86 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhh-------h
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L 107 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a-------l 107 (390)
+++|.|+||+|++|..++..|+..+. +|++.+.++ ......++.... .++..+.+ -+| .+++ +
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 45899999999999999999998886 899999876 333444454322 23332221 122 2222 2
Q ss_pred CCCcEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHHhCCCcEEEEec
Q 016424 108 TGMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~---g~~r~---~l~~~N----~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
...|++|..+|..... ..+.. ..+..| ....+.+.+.+.+. ..+.+++++
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~is 143 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVG 143 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeC
Confidence 3679999998864221 11222 223333 33444555555443 235566654
No 454
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.10 E-value=0.15 Score=52.12 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=46.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHH-HHH-hcccCCCeEEEEeCCCChhhhhCCCcEEEE
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADI-SHMDTGAVVRGFLGQPQLENALTGMDLVII 115 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a-~DL-~~~~~~~~v~~~~~t~dl~~al~dADiVIi 115 (390)
+.+++||+|+||+|.+|..+..+|...| ..+|.++..+...|.. .+. -+... ..+..+. ..+ .++++++|+|++
T Consensus 35 ~~~~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~saG~~i~~~~~~l~~-~~~~~~~-~~~-~~~~~~~DvVf~ 110 (381)
T PLN02968 35 SEEKKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKAGQSFGSVFPHLIT-QDLPNLV-AVK-DADFSDVDAVFC 110 (381)
T ss_pred cccccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhcCCCchhhCccccC-cccccee-cCC-HHHhcCCCEEEE
Confidence 3456799999999999999999888886 3478887765422211 111 11111 1111111 112 244799999999
Q ss_pred cCC
Q 016424 116 PAG 118 (390)
Q Consensus 116 ~ag 118 (390)
+.+
T Consensus 111 Alp 113 (381)
T PLN02968 111 CLP 113 (381)
T ss_pred cCC
Confidence 763
No 455
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.09 E-value=0.23 Score=50.97 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=74.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHH-H--HHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-T--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~-a--~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~ 119 (390)
||.|||. |+.|.+++..|...+. ++...|....... . ..+.. . ..++.+.+ .+ .+.+.++|+||.+.|+
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~-~--~gi~~~~g-~~-~~~~~~~d~vv~sp~i 72 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRL-N--EGSVLHTG-LH-LEDLNNADLVVKSPGI 72 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhh-c--cCcEEEec-Cc-hHHhccCCEEEECCCC
Confidence 5889999 9999999999998887 8999998752111 1 11211 1 13343434 33 4668999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 120 p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~ 175 (390)
|...- .......++++++.+. +.+.+.. +..+|-+ ||==.++|.+++.+++..
T Consensus 73 ~~~~p-~~~~a~~~~i~i~~~~-e~~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~ 127 (433)
T TIGR01087 73 PPDHP-LVQAAAKRGIPVVGDI-ELFLRLV-PLPVVAITGTNGKTTTTSLLYHLLKAA 127 (433)
T ss_pred CCCCH-HHHHHHHCCCcEEEHH-HHHHhhc-CCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 85422 1222234566666554 2233333 2234444 444456677777777664
No 456
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.06 E-value=0.59 Score=42.98 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch---HHHHHHHhcccCCCeEEEEeC-CCC---hhhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQ---LENA------ 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~---~g~a~DL~~~~~~~~v~~~~~-t~d---l~~a------ 106 (390)
++++|.|+||+|++|+.++..+...+. ++++...+.. .....++.... .++..+.+ -+| +.++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999988875 6766655431 22333333211 22332211 112 1122
Q ss_pred -hCCCcEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHHhC---CCcEEEEec
Q 016424 107 -LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLIS 158 (390)
Q Consensus 107 -l~dADiVIi~ag~p~k~---g~~r~---~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~t 158 (390)
+.+.|+||..+|..... ..+.. ..+..|+.-...+.+.+..+. +...+++++
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~is 141 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINIS 141 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 23689999998864322 12222 234566666666666665543 234555555
No 457
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.02 E-value=0.19 Score=49.34 Aligned_cols=78 Identities=18% Similarity=0.355 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-...+|+|||.|.-||.+++.+|...+. .+..++.. |.++++.++.||+||.+.|
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~a--tVtv~hs~-----------------------T~~l~~~~~~ADIvi~avG 211 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAGC--TVTVCHRF-----------------------TKNLRHHVRNADLLVVAVG 211 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCC--eEEEEECC-----------------------CCCHHHHHhhCCEEEEcCC
Confidence 3467999999955699999999987664 56555431 3478888999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV 161 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t-NPv 161 (390)
.|.- +.. ....|++++|-++ |++
T Consensus 212 ~p~~---------------v~~-----~~vk~gavVIDvGin~~ 235 (285)
T PRK10792 212 KPGF---------------IPG-----EWIKPGAIVIDVGINRL 235 (285)
T ss_pred Cccc---------------ccH-----HHcCCCcEEEEcccccc
Confidence 8752 000 2235888888775 653
No 458
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.01 E-value=0.15 Score=50.61 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
+.+||+|||+ |.+|.+++..|...+. +++.++....... ..+... . ++. + +..+++++||+|+++.
T Consensus 2 ~~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~--G--v~~---~-s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 2 KGKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATED--G--FKV---G-TVEEAIPQADLIMNLL 67 (314)
T ss_pred CcCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHC--C--CEE---C-CHHHHHhcCCEEEEeC
Confidence 3579999999 9999999999998886 5666554331111 111111 1 122 1 3568899999999987
No 459
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.99 E-value=0.25 Score=48.66 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
||.|||+ |++|..++..|+..| +.+|+|+|-|.
T Consensus 1 kVlVVGa-GGlG~eilknLal~G-vg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSG-FRNIHVIDMDT 33 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC-CCeEEEECCCE
Confidence 6899999 999999999999988 47999999874
No 460
>PRK06398 aldose dehydrogenase; Validated
Probab=93.97 E-value=0.1 Score=49.47 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
.++|.|+||+|++|..++..|...+. ++++.|.++
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~ 40 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKE 40 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 46899999999999999999998886 888888875
No 461
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.95 E-value=0.24 Score=47.09 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
|+++.|+||+|++|..++..+...+. +|++.|.+.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 35 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY--EVWATARKA 35 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35789999999999999999988876 899999875
No 462
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.93 E-value=3 Score=39.18 Aligned_cols=114 Identities=18% Similarity=0.129 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCCh------hhhhCCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL------ENALTGMD 111 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~dl------~~al~dAD 111 (390)
.+++.|+|++|++|..++..|...+. +|++.|.+. ......++.... ..++..+.. -+|. .+.+...|
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 46899999999999999999998876 899999876 233333444321 122332211 1221 11345789
Q ss_pred EEEEcCCCCC-CCC--CCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424 112 LVIIPAGVPR-KPG--MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 112 iVIi~ag~p~-k~g--~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t 158 (390)
++|..+|... .+- .+.. ..+..|+.- .+.+.+.+.+. ..+.+++++
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~is 139 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNVI 139 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEec
Confidence 9999988643 221 2222 234555543 33444444433 235566654
No 463
>PLN02306 hydroxypyruvate reductase
Probab=93.93 E-value=0.34 Score=49.59 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCchHHHH---HHHhc-c--cCCCeEEEEeCCCChhhhhCCCc
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISH-M--DTGAVVRGFLGQPQLENALTGMD 111 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~~~g~a---~DL~~-~--~~~~~v~~~~~t~dl~~al~dAD 111 (390)
-..++|.|||. |.||+.++..+. ..+. ++..||........ ..... . .....+... ...++++.++.||
T Consensus 163 L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~sD 238 (386)
T PLN02306 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREAD 238 (386)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhccccccccccccccc-ccCCHHHHHhhCC
Confidence 34579999999 999999998875 4455 89999986421111 11110 0 000111111 1247899999999
Q ss_pred EEEEcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 112 LVIIPAG-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 112 iVIi~ag-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
+|++..- .+.-.| ++- .+.+...-|++++||++
T Consensus 239 iV~lh~Plt~~T~~------------lin--~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 239 VISLHPVLDKTTYH------------LIN--KERLALMKKEAVLVNAS 272 (386)
T ss_pred EEEEeCCCChhhhh------------hcC--HHHHHhCCCCeEEEECC
Confidence 9999642 221111 111 13445556899999997
No 464
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.91 E-value=0.06 Score=52.42 Aligned_cols=98 Identities=23% Similarity=0.283 Sum_probs=57.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p~ 121 (390)
|||.|+||+|.+|+.+...+...+. +++.++... .|+.+.. .++ ++-++. +-|+||.+++...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~~-~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEAF-KPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHHH---SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHHh-CCCeEeccceeec
Confidence 7999999999999999999988775 777776542 1222111 000 111222 4788888886542
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 016424 122 KP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 122 k~--g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~t 158 (390)
.. ..........|......+++.+.+. ++.+|.+|
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S 100 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS 100 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence 11 1234455677888888888888765 45666664
No 465
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.90 E-value=0.18 Score=49.44 Aligned_cols=59 Identities=20% Similarity=0.389 Sum_probs=46.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.-..++|+|||.|.-||.+++.+|.+.+. .+...+. -|.|+++-++.||+||.+.
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a--tVt~chs-----------------------~T~~l~~~~~~ADIvIsAv 210 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNA--TVTLCHS-----------------------KTQNLPSIVRQADIIVGAV 210 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEeC
Confidence 34567999999988999999999987763 5554441 1457888899999999999
Q ss_pred CCCC
Q 016424 118 GVPR 121 (390)
Q Consensus 118 g~p~ 121 (390)
|.|.
T Consensus 211 Gk~~ 214 (284)
T PRK14177 211 GKPE 214 (284)
T ss_pred CCcC
Confidence 8774
No 466
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.88 E-value=0.73 Score=45.02 Aligned_cols=79 Identities=28% Similarity=0.425 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeCC-CC---hhhh------
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ-PQ---LENA------ 106 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~t-~d---l~~a------ 106 (390)
+.+++.|+||+|++|..++..|+..+. ++++.|... ....+.++... ..++..+.+. +| ..+.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999998876 889999754 23334444332 2233333211 12 1111
Q ss_pred hCCCcEEEEcCCCCCC
Q 016424 107 LTGMDLVIIPAGVPRK 122 (390)
Q Consensus 107 l~dADiVIi~ag~p~k 122 (390)
+...|++|..+|..+.
T Consensus 87 ~g~iD~li~nAG~~~~ 102 (306)
T PRK07792 87 LGGLDIVVNNAGITRD 102 (306)
T ss_pred hCCCCEEEECCCCCCC
Confidence 2357999999997654
No 467
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.85 E-value=0.19 Score=49.31 Aligned_cols=58 Identities=19% Similarity=0.370 Sum_probs=45.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-..++|+|||.|.-||.+++.+|...+. .+..++. -|.|+.+.++.||+||.+.|
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~a--tVtv~hs-----------------------~T~~l~~~~~~ADIvv~AvG 216 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRNA--TVSVCHV-----------------------FTDDLKKYTLDADILVVATG 216 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCC--EEEEEec-----------------------cCCCHHHHHhhCCEEEEccC
Confidence 4568999999966699999999987764 5555552 13577788999999999999
Q ss_pred CCC
Q 016424 119 VPR 121 (390)
Q Consensus 119 ~p~ 121 (390)
.|.
T Consensus 217 ~p~ 219 (287)
T PRK14176 217 VKH 219 (287)
T ss_pred Ccc
Confidence 885
No 468
>PRK06523 short chain dehydrogenase; Provisional
Probab=93.83 E-value=0.08 Score=49.82 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
+.++|.|+||+|++|+.++..|+..+. ++++.+.+.
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~ 43 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR 43 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence 346899999999999999999998876 899999875
No 469
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.82 E-value=0.19 Score=54.35 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
+..||.|+|| |++|+.++..|+.-| +.+|.|+|-+.
T Consensus 337 ~~~kVLIvGa-GGLGs~VA~~La~~G-Vg~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLGA-GTLGCNVARCLIGWG-VRHITFVDNGK 372 (664)
T ss_pred hcCeEEEECC-cHHHHHHHHHHHHcC-CCeEEEEcCCE
Confidence 3569999999 999999999999888 46899999874
No 470
>PRK12747 short chain dehydrogenase; Provisional
Probab=93.82 E-value=2.1 Score=40.00 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 75 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di 75 (390)
.+.+.|.||+|++|..++..|+..+. ++++.+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~ 36 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG 36 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 46899999999999999999998886 7777654
No 471
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=93.82 E-value=0.55 Score=43.12 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=64.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-------C
Q 016424 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-------G 109 (390)
Q Consensus 44 I~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~-------d 109 (390)
|.|+|++|++|+.++..|..++. ++.+.+.+. ......++.+.. .++..... -+| +.++++ .
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP 76 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999988876 788888764 223334444322 22322221 112 223332 3
Q ss_pred CcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 016424 110 MDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 159 (390)
Q Consensus 110 ADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~tN 159 (390)
.|+||..+|..... +.+. ...+..|..-...+.+.+..+. ..+.+++++-
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS 135 (239)
T TIGR01830 77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISS 135 (239)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 59999998864321 1122 2345667776666666665542 2345666653
No 472
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.81 E-value=0.47 Score=43.80 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
..+|.|+||+|++|+.++..+...+. ++++.+.++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999988886 899999876
No 473
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=93.80 E-value=0.48 Score=50.47 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=70.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh----CCC-----CcEEEEEeCCc--hHHH-------HHHHhcccCCCeEEEEeCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--TPGV-------TADISHMDTGAVVRGFLGQPQ 102 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~----~~~-----~~eL~L~Di~~--~~g~-------a~DL~~~~~~~~v~~~~~t~d 102 (390)
..||++.|| |..|..++.+|.. .++ -..++++|.+. .... -..+.+...... .. ...+
T Consensus 297 d~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~-~~--~~~~ 372 (559)
T PTZ00317 297 EQRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAE-DS--SLKT 372 (559)
T ss_pred hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccc-cc--cCCC
Confidence 479999999 9999999976653 443 26899999876 1111 112222110011 00 1247
Q ss_pred hhhhhCCC--cEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCc
Q 016424 103 LENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (390)
Q Consensus 103 l~~al~dA--DiVIi~ag~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPvd 162 (390)
+.++++++ |++|=+.+.|-- +-+++.+.|.++|++.+|+-.|||..
T Consensus 373 L~e~v~~~KPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~~rPIIFaLSNPt~ 420 (559)
T PTZ00317 373 LEDVVRFVKPTALLGLSGVGGV--------------FTEEVVKTMASNVERPIIFPLSNPTS 420 (559)
T ss_pred HHHHHhccCCCEEEEecCCCCC--------------CCHHHHHHHHhcCCCCEEEECCCCCC
Confidence 99999999 999977665421 23478889999999999999999983
No 474
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.80 E-value=0.92 Score=42.29 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=47.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchH---HHHHHHhcccCCCeEEEEeC-CCChh---h-------hh
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLG-QPQLE---N-------AL 107 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~---g~a~DL~~~~~~~~v~~~~~-t~dl~---~-------al 107 (390)
++|.|+||+|++|+.++..|+..+. +++++|..... ....++... ..++..+.. -+|.. + .+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPDDEELAATQQELRAL--GVEVIFFPADVADLSAHEAMLDAAQAAW 78 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4688889999999999999998876 89999975422 222233221 123333321 12211 1 12
Q ss_pred CCCcEEEEcCCCC
Q 016424 108 TGMDLVIIPAGVP 120 (390)
Q Consensus 108 ~dADiVIi~ag~p 120 (390)
...|+||..+|.+
T Consensus 79 ~~id~vi~~ag~~ 91 (256)
T PRK12745 79 GRIDCLVNNAGVG 91 (256)
T ss_pred CCCCEEEECCccC
Confidence 4689999999864
No 475
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.79 E-value=0.2 Score=49.19 Aligned_cols=60 Identities=23% Similarity=0.457 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-..++|+|||.|.-||.+++.+|....--..+.+... .|.++.+.++.||+||.+.|
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs-----------------------~T~~l~~~~k~ADIvV~AvG 212 (284)
T PRK14193 156 LAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHT-----------------------GTRDLAAHTRRADIIVAAAG 212 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCC-----------------------CCCCHHHHHHhCCEEEEecC
Confidence 3567999999999999999999876311124444332 14578888999999999999
Q ss_pred CCC
Q 016424 119 VPR 121 (390)
Q Consensus 119 ~p~ 121 (390)
.|.
T Consensus 213 kp~ 215 (284)
T PRK14193 213 VAH 215 (284)
T ss_pred CcC
Confidence 874
No 476
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.72 E-value=0.19 Score=49.20 Aligned_cols=58 Identities=16% Similarity=0.388 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-..++|+|||.|.-||.+++.+|...+. .+.+++. .|.|+++.++.||+||.+.|
T Consensus 155 l~Gk~vvVvGrS~iVGkPla~lL~~~~a--tVtichs-----------------------~T~~l~~~~~~ADIvI~AvG 209 (284)
T PRK14170 155 IEGKRAVVIGRSNIVGKPVAQLLLNENA--TVTIAHS-----------------------RTKDLPQVAKEADILVVATG 209 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEecC
Confidence 4567999999988999999999987663 5544422 14577888999999999999
Q ss_pred CCC
Q 016424 119 VPR 121 (390)
Q Consensus 119 ~p~ 121 (390)
.|.
T Consensus 210 ~~~ 212 (284)
T PRK14170 210 LAK 212 (284)
T ss_pred CcC
Confidence 775
No 477
>PRK07201 short chain dehydrogenase; Provisional
Probab=93.70 E-value=0.82 Score=49.28 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhhC-----
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT----- 108 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al~----- 108 (390)
+++++.|+||+|++|..++..|+..+. +|++++.+. ......++.... .++..+.+ -+| .+++++
T Consensus 370 ~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 370 VGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 356899999999999999999998886 899999876 233334443221 23333221 122 223333
Q ss_pred --CCcEEEEcCCCCCCCC--C------CHHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEec
Q 016424 109 --GMDLVIIPAGVPRKPG--M------TRDDLFNINAGIVRTLCEG----IAKCCPNATVNLIS 158 (390)
Q Consensus 109 --dADiVIi~ag~p~k~g--~------~r~~l~~~N~~ii~~ia~~----I~~~~p~a~iiv~t 158 (390)
..|++|..+|...... . .-...+..|..-...+.+. +.+. ..+.+++++
T Consensus 446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~is 508 (657)
T PRK07201 446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVS 508 (657)
T ss_pred cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEEC
Confidence 6899999998642211 1 1123355565544444333 3333 345666665
No 478
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.68 E-value=0.22 Score=49.98 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=43.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch-HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~-~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
++||+|+||+|.+|..++..|...+.+.-+.+.|.... +.......+........ +. ..+. .+.+++|+|+++.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~-~~-~~~~-~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLV-LE-PLDP-EILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCce-ee-cCCH-HHhcCCCEEEECC
Confidence 57999999999999999988887765544566774321 11211111111101112 11 1121 2568999999975
No 479
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.68 E-value=1.7 Score=40.18 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
+++|.|+||+|++|..++..++..+. +|+++|.+.
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 35899999999999999999998876 899999886
No 480
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=93.65 E-value=0.81 Score=49.29 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch----H--HHHHHHhcc-cCCCeEEEEe--CCCChhhhhC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----P--GVTADISHM-DTGAVVRGFL--GQPQLENALT 108 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~----~--g~a~DL~~~-~~~~~v~~~~--~t~dl~~al~ 108 (390)
.++..||+|+|. |++|++++..|+..|+ .+++.+|.|.. . +...++.+. .....++... .+.|+.+.++
T Consensus 126 ~qR~akVlVlG~-Gg~~s~lv~sL~~sG~-~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~ 203 (637)
T TIGR03693 126 LSRNAKILAAGS-GDFLTKLVRSLIDSGF-PRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFE 203 (637)
T ss_pred hhhcccEEEEec-CchHHHHHHHHHhcCC-CcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhc
Confidence 346779999999 9999999999999884 46778877651 1 222333322 2223333322 3468899999
Q ss_pred CCcEEEEcCCCCC
Q 016424 109 GMDLVIIPAGVPR 121 (390)
Q Consensus 109 dADiVIi~ag~p~ 121 (390)
+.|+||..+.-|.
T Consensus 204 ~~DiVi~vsDdy~ 216 (637)
T TIGR03693 204 PADWVLYVSDNGD 216 (637)
T ss_pred CCcEEEEECCCCC
Confidence 9999999875443
No 481
>PRK09134 short chain dehydrogenase; Provisional
Probab=93.63 E-value=1 Score=42.31 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---hHHHHHHHhcccCCCeEEEEeC-CCC---hhhhh-----
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL----- 107 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---~~g~a~DL~~~~~~~~v~~~~~-t~d---l~~al----- 107 (390)
.++++.|+||+|++|..++..|...+. .+++.+... ......++.+.. .++..+.. -+| +.+++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~ 83 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASA 83 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999988775 777766543 222333333221 23333321 122 22222
Q ss_pred --CCCcEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEe
Q 016424 108 --TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLI 157 (390)
Q Consensus 108 --~dADiVIi~ag~p~k~---g~~r---~~l~~~N~~ii~~ia~~I~~~~---p~a~iiv~ 157 (390)
...|+||..+|..... ..+. ...+..|+.-...+.+.+..+. ..+.++++
T Consensus 84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 144 (258)
T PRK09134 84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNM 144 (258)
T ss_pred HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 2469999999864321 1222 2345566654455555544432 23455544
No 482
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.63 E-value=0.6 Score=48.22 Aligned_cols=125 Identities=18% Similarity=0.138 Sum_probs=73.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
.+||.|+|. |+.|.+.+..|...+-..++...|.....-....|.. .++.+.+..+ .+.+.++|+||.+.|+|
T Consensus 7 ~~~v~viG~-G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-----g~~~~~g~~~-~~~~~~~d~vV~SpgI~ 79 (438)
T PRK04663 7 IKNVVVVGL-GITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-----DVELHSGGWN-LEWLLEADLVVTNPGIA 79 (438)
T ss_pred CceEEEEec-cHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-----CCEEEeCCCC-hHHhccCCEEEECCCCC
Confidence 468999999 9999988876666532237899998652111122421 3444334323 35688999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~ 175 (390)
...- .......++++++.++- .+.+..+ ..+|-+ ||==.+++.+++.+++..
T Consensus 80 ~~~p-~~~~a~~~gi~i~~~~e-l~~~~~~-~~~I~VTGTnGKTTTt~ll~~iL~~~ 133 (438)
T PRK04663 80 LATP-EIQQVLAAGIPVVGDIE-LFAWAVD-KPVIAITGSNGKSTVTDLTGVMAKAA 133 (438)
T ss_pred CCCH-HHHHHHHCCCcEEEHHH-HHHhhcC-CCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence 5422 12222345666665542 2222332 234444 444446667777777654
No 483
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.62 E-value=0.59 Score=48.12 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc--hHHHHHHHhcccCCCeEEEEeCCCChhhhhC-CCcEEEEcC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA 117 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~--~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~-dADiVIi~a 117 (390)
.++|.|+|+ |++|.+.+..|...+. ++.+.|.+. .......|... .++.+.+. +..+.+. +.|+||.+.
T Consensus 5 ~k~v~v~G~-g~~G~s~a~~l~~~G~--~V~~~d~~~~~~~~~~~~l~~~----g~~~~~~~-~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGL-AKSGYAAAKLLHKLGA--NVTVNDGKPFSENPEAQELLEE----GIKVICGS-HPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCCccchhHHHHHHhc----CCEEEeCC-CCHHHhcCcCCEEEECC
Confidence 468999999 8899999999998886 899999865 22223334432 12222222 2223344 399999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCcccHHHHHHHHHHh
Q 016424 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 118 g~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~--tNPvd~~t~i~ae~~~~~ 175 (390)
|+|...- ........+++++.+.- ......+ ..+|-+ ||==.+++.+++.+++..
T Consensus 77 gi~~~~~-~~~~a~~~~i~v~~~~e-l~~~~~~-~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 77 GIPYTNP-MVEKALEKGIPIITEVE-LAYLISE-APIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred CCCCCCH-HHHHHHHCCCcEEeHHH-HHHHhcC-CCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 9885421 11122244556554432 1222222 223444 454456667777777664
No 484
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.60 E-value=0.23 Score=48.58 Aligned_cols=58 Identities=19% Similarity=0.426 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-..++|+|||.|.-||.+++.+|.+.+. .+..++. -|.|+.+.++.||+||.++|
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~A--tVt~chs-----------------------~T~~l~~~~~~ADIvIsAvG 210 (278)
T PRK14172 156 IEGKEVVVIGRSNIVGKPVAQLLLNENA--TVTICHS-----------------------KTKNLKEVCKKADILVVAIG 210 (278)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEcCC
Confidence 4567999999988999999999987763 5555442 13577788999999999999
Q ss_pred CCC
Q 016424 119 VPR 121 (390)
Q Consensus 119 ~p~ 121 (390)
.|.
T Consensus 211 kp~ 213 (278)
T PRK14172 211 RPK 213 (278)
T ss_pred CcC
Confidence 775
No 485
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.60 E-value=0.2 Score=49.37 Aligned_cols=59 Identities=22% Similarity=0.384 Sum_probs=45.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.-+.++|+|||.|.-||.+++.+|.+.+. .+..+. +-|.|+++.++.||+||.+.
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~a--tVtv~h-----------------------s~T~~l~~~~~~ADIvIsAv 209 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANA--TVTIAH-----------------------SRTQDLASITREADILVAAA 209 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC--EEEEeC-----------------------CCCCCHHHHHhhCCEEEEcc
Confidence 34567999999988999999999987763 443331 11457778899999999999
Q ss_pred CCCC
Q 016424 118 GVPR 121 (390)
Q Consensus 118 g~p~ 121 (390)
|.|.
T Consensus 210 Gkp~ 213 (297)
T PRK14186 210 GRPN 213 (297)
T ss_pred CCcC
Confidence 9774
No 486
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=93.60 E-value=0.34 Score=48.34 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHH-hCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~-~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
-..++|.|||. |.||..++..+. ..+. +++.||.........++ .++. .++.+.++.||+|++..
T Consensus 143 L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~~----~~l~ell~~sDvv~lh~ 208 (323)
T PRK15409 143 VHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NARY----CDLDTLLQESDFVCIIL 208 (323)
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcEe----cCHHHHHHhCCEEEEeC
Confidence 34579999999 999999998876 4454 88888875311111111 1221 26789999999999975
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 016424 118 G-VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159 (390)
Q Consensus 118 g-~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tN 159 (390)
. .|.-.+ ++- .+.+....|++++||++-
T Consensus 209 plt~~T~~------------li~--~~~l~~mk~ga~lIN~aR 237 (323)
T PRK15409 209 PLTDETHH------------LFG--AEQFAKMKSSAIFINAGR 237 (323)
T ss_pred CCChHHhh------------ccC--HHHHhcCCCCeEEEECCC
Confidence 2 121111 110 123445568999999973
No 487
>PRK06953 short chain dehydrogenase; Provisional
Probab=93.59 E-value=0.33 Score=44.63 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEE--eCCCChhh---hhC--CCcEE
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF--LGQPQLEN---ALT--GMDLV 113 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~--~~t~dl~~---al~--dADiV 113 (390)
|+++.|+||+|++|+.++..|...+. +++++|.+... ..++.... ...... +...++.+ .+. ..|+|
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~--~~~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~~~d~v 74 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAA--LAALQALG--AEALALDVADPASVAGLAWKLDGEALDAA 74 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhcc--ceEEEecCCCHHHHHHHHHHhcCCCCCEE
Confidence 35789999999999999998887775 89999987521 11222211 111110 00112222 133 37999
Q ss_pred EEcCCCCC--C-C--CCCHH---HHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 016424 114 IIPAGVPR--K-P--GMTRD---DLFNINAGIVRTLCEGIAKCC--PNATVNLIS 158 (390)
Q Consensus 114 Ii~ag~p~--k-~--g~~r~---~l~~~N~~ii~~ia~~I~~~~--p~a~iiv~t 158 (390)
|.++|... . + ..+.. ..+..|..-...+.+.+..+- ..+.+++++
T Consensus 75 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~is 129 (222)
T PRK06953 75 VYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLS 129 (222)
T ss_pred EECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEc
Confidence 99988752 1 1 12332 345566655555555554421 234455554
No 488
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.59 E-value=0.15 Score=51.05 Aligned_cols=75 Identities=25% Similarity=0.233 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHH-H-HhcccCCCeEEEEeCCCChhh-hhCCCcEEEEc
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-D-ISHMDTGAVVRGFLGQPQLEN-ALTGMDLVIIP 116 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~-D-L~~~~~~~~v~~~~~t~dl~~-al~dADiVIi~ 116 (390)
+++||.|+||+|..|..+..+|...|.+. +.++...+..|... | .-|.....+++... -|..+ ...+||+||++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve-~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~--~~~~~~~~~~~DvvFla 77 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVE-LILISSRERAGKPVSDVHPNLRGLVDLPFQT--IDPEKIELDECDVVFLA 77 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeE-EEEeechhhcCCchHHhCccccccccccccc--CChhhhhcccCCEEEEe
Confidence 36899999999999999999999998554 88888765333222 2 11222112233321 12222 24569999997
Q ss_pred C
Q 016424 117 A 117 (390)
Q Consensus 117 a 117 (390)
-
T Consensus 78 l 78 (349)
T COG0002 78 L 78 (349)
T ss_pred c
Confidence 3
No 489
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.57 E-value=0.58 Score=48.94 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=76.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCch--HHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~--~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
..||.|+|. |.-|...+..|...+. ++.++|.++. .....+|.. . .. ... +..+ .+.+.++|+||.+.|
T Consensus 8 ~~~v~v~G~-G~sG~~~~~~l~~~g~--~v~~~d~~~~~~~~~~~~l~~-~--~~-~~~-~~~~-~~~~~~~d~vV~Spg 78 (468)
T PRK04690 8 GRRVALWGW-GREGRAAYRALRAHLP--AQALTLFCNAVEAREVGALAD-A--AL-LVE-TEAS-AQRLAAFDVVVKSPG 78 (468)
T ss_pred CCEEEEEcc-chhhHHHHHHHHHcCC--EEEEEcCCCcccchHHHHHhh-c--CE-EEe-CCCC-hHHccCCCEEEECCC
Confidence 458999999 9999999999998887 8999998652 112223433 1 11 112 2223 356889999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC--C--CcEEEEe--cCCCcccHHHHHHHHHHhC
Q 016424 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC--P--NATVNLI--SNPVNSTVPIAAEVFKKAG 176 (390)
Q Consensus 119 ~p~k~g~~r~~l~~~N~~ii~~ia~~I~~~~--p--~a~iiv~--tNPvd~~t~i~ae~~~~~s 176 (390)
+|...-+ ......++++++.++--...... + ...+|-+ ||==.++|.+++.+++..+
T Consensus 79 I~~~~p~-~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 141 (468)
T PRK04690 79 ISPYRPE-ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG 141 (468)
T ss_pred CCCCCHH-HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 9854221 22223566777765544333322 1 1223334 4544567777778876653
No 490
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=93.55 E-value=0.59 Score=53.47 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=50.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc---------------------hHHHHHHHhcccCCCeEEEEeCC
Q 016424 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------------TPGVTADISHMDTGAVVRGFLGQ 100 (390)
Q Consensus 42 ~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~---------------------~~g~a~DL~~~~~~~~v~~~~~t 100 (390)
.+|.|+|+ |++|..++..|+..| +..|.|+|-+. +.+.+..|........++...+.
T Consensus 25 s~VLIiG~-gGLG~EiaKnL~laG-Vg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 102 (1008)
T TIGR01408 25 SNVLISGM-GGLGLEIAKNLVLAG-VKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVP 102 (1008)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcC-CCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEeccc
Confidence 49999999 999999999999988 56899999763 11112233333334556655432
Q ss_pred CChhhhhCCCcEEEEcC
Q 016424 101 PQLENALTGMDLVIIPA 117 (390)
Q Consensus 101 ~dl~~al~dADiVIi~a 117 (390)
-+ ++-+++.|+||.+.
T Consensus 103 l~-~e~l~~fdvVV~t~ 118 (1008)
T TIGR01408 103 FN-EEFLDKFQCVVLTE 118 (1008)
T ss_pred CC-HHHHcCCCEEEECC
Confidence 22 46789999999984
No 491
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.53 E-value=0.92 Score=42.15 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 76 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~ 76 (390)
.++|.|+||+|++|+.++..|...+. ++++.+.+
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~ 38 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ 38 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence 45899999999999999999988875 77776543
No 492
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.53 E-value=0.84 Score=42.81 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEe-CCCC---hhhh-------hCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LTG 109 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~-~t~d---l~~a-------l~d 109 (390)
.+++.|+||+|++|..++..|...+. ++++.+.... ....++.+.. +..+. .-+| +.++ +..
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~----~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKG----VFTIKCDVGNRDQVKKSKEVVEKEFGR 79 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCC----CeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999998886 7777765431 1222332211 11111 1112 2222 235
Q ss_pred CcEEEEcCCCCCC-C--CCCHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 016424 110 MDLVIIPAGVPRK-P--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (390)
Q Consensus 110 ADiVIi~ag~p~k-~--g~~r~---~l~~~N~~i----i~~ia~~I~~~~p~a~iiv~t 158 (390)
.|+||..+|.... + ..+.. ..+..|+.- .+.+.+.+.+. ..+.|++++
T Consensus 80 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~is 137 (255)
T PRK06463 80 VDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIA 137 (255)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence 7999999987532 1 12222 234445433 45555555433 345666665
No 493
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.52 E-value=0.69 Score=41.23 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 40 ~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
+.+||.|||| |.||...+..|...+. ++++++.+-.... .++. .++.....-+ ++.+.++|+||.+.+
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~~l-~~l~------~i~~~~~~~~-~~dl~~a~lViaaT~ 79 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICKEM-KELP------YITWKQKTFS-NDDIKDAHLIYAATN 79 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCHHH-Hhcc------CcEEEecccC-hhcCCCceEEEECCC
Confidence 3569999999 9999999998888776 8888875432222 2232 1111111111 356899999999753
No 494
>PRK07577 short chain dehydrogenase; Provisional
Probab=93.51 E-value=0.33 Score=44.72 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
.++|.|+||+|++|..++..+...+. ++++.+.+.
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35899999999999999999998885 899998875
No 495
>PRK06153 hypothetical protein; Provisional
Probab=93.50 E-value=0.094 Score=53.47 Aligned_cols=35 Identities=37% Similarity=0.671 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~ 77 (390)
..||+|||+ |++|+.++..|+..+ +.+|+|+|-|.
T Consensus 176 ~~~VaIVG~-GG~GS~Va~~LAR~G-VgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGL-GGTGSYILDLVAKTP-VREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcC-CccHHHHHHHHHHcC-CCEEEEECCCE
Confidence 469999999 999999999999988 47999999885
No 496
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.49 E-value=0.87 Score=39.48 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=72.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCc----hHHHHHHHhcccCCCeEEEEeCC-CC----------hhhhh
Q 016424 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQ-PQ----------LENAL 107 (390)
Q Consensus 43 KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~----~~g~a~DL~~~~~~~~v~~~~~t-~d----------l~~al 107 (390)
.+.|+||+|++|..++..+...+ ...+++++.++ ......++.+. ..++..+... ++ ..+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g-~~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRG-ARVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcC-ceEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 57889999999999999998883 34788999882 23333444422 2444444311 11 12234
Q ss_pred CCCcEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 016424 108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (390)
Q Consensus 108 ~dADiVIi~ag~p~k~g---~~r---~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~tNPv 161 (390)
..-|++|..+|...... ++. ...+..|+....-+.+.+.. .+.+.|+++|-..
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~ 137 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIA 137 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGG
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchh
Confidence 58899999998766221 111 23466676666667777776 5577788776433
No 497
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.47 E-value=0.22 Score=48.73 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=45.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-+.++|+|||.|.-||.+++.+|...+- .+..... -|.|+++.++.||+||.+.|
T Consensus 154 l~Gk~vvViGrS~iVGkPla~lL~~~~a--tVtichs-----------------------~T~~l~~~~~~ADIvI~AvG 208 (282)
T PRK14169 154 VAGKRVVIVGRSNIVGRPLAGLMVNHDA--TVTIAHS-----------------------KTRNLKQLTKEADILVVAVG 208 (282)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEECC-----------------------CCCCHHHHHhhCCEEEEccC
Confidence 4567999999988999999999987653 4443321 14577888999999999999
Q ss_pred CCC
Q 016424 119 VPR 121 (390)
Q Consensus 119 ~p~ 121 (390)
.|.
T Consensus 209 ~p~ 211 (282)
T PRK14169 209 VPH 211 (282)
T ss_pred CcC
Confidence 775
No 498
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.45 E-value=0.25 Score=48.62 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=46.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 016424 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (390)
Q Consensus 38 ~~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~a 117 (390)
.-..++|+|||.|.-||.+++.+|.+.+- .+.+++. -|.|+++-++.||+||.+.
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~a--TVt~chs-----------------------~T~~l~~~~~~ADIvVsAv 211 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENC--TVTTVHS-----------------------ATRDLADYCSKADILVAAV 211 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEcc
Confidence 34567999999988999999999987653 4544442 1357778899999999999
Q ss_pred CCCC
Q 016424 118 GVPR 121 (390)
Q Consensus 118 g~p~ 121 (390)
|.|.
T Consensus 212 Gkp~ 215 (294)
T PRK14187 212 GIPN 215 (294)
T ss_pred CCcC
Confidence 9775
No 499
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.44 E-value=0.49 Score=48.89 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=75.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 016424 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (390)
Q Consensus 41 ~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag~p 120 (390)
.--|.|+|. |+.|.+++..|...+. ++...|.........+|... ...++.+.+..+ .+.+.++|+||.+.|+|
T Consensus 6 ~~~~~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~l~~~--~~g~~~~~~~~~-~~~~~~~d~vV~sp~i~ 79 (448)
T PRK03803 6 DGLHIVVGL-GKTGLSVVRFLARQGI--PFAVMDSREQPPGLDTLARE--FPDVELRCGGFD-CELLVQASEIIISPGLA 79 (448)
T ss_pred CCeEEEEee-cHhHHHHHHHHHhCCC--eEEEEeCCCCchhHHHHHhh--cCCcEEEeCCCC-hHHhcCCCEEEECCCCC
Confidence 346899999 9999998889988886 89999987521111224321 123444443334 36688999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCcccHHHHHHHHHHh
Q 016424 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKA 175 (390)
Q Consensus 121 ~k~g~~r~~l~~~N~~ii~~ia~~I~~~~p~a~iiv~-tNPvd~~t~i~ae~~~~~ 175 (390)
...-+ ......++++++.++-- +.+..+.-+|.|. ||==.++|.+++.+++..
T Consensus 80 ~~~p~-~~~a~~~~i~i~~~~el-~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 133 (448)
T PRK03803 80 LDTPA-LRAAAAMGIEVIGDIEL-FAREAKAPVIAITGSNGKSTVTTLVGEMAKAA 133 (448)
T ss_pred CCCHH-HHHHHHCCCcEEEHHHH-HHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 64221 12223445666653311 1122222233333 455557777887877664
No 500
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.43 E-value=0.42 Score=49.28 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHhCCCCcEEEEEeCCchHHHHHHHhcccCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 016424 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (390)
Q Consensus 39 ~~~~KI~VIGa~G~vG~~~a~~l~~~~~~~eL~L~Di~~~~g~a~DL~~~~~~~~v~~~~~t~dl~~al~dADiVIi~ag 118 (390)
-+..||.|||| |-+|.-++..|...+. .+|.+..... ..+.+|.+-.. ..+..+ +++.+.+.++|+||.+.|
T Consensus 176 L~~~~vlvIGA-Gem~~lva~~L~~~g~-~~i~IaNRT~--erA~~La~~~~-~~~~~l---~el~~~l~~~DvVissTs 247 (414)
T COG0373 176 LKDKKVLVIGA-GEMGELVAKHLAEKGV-KKITIANRTL--ERAEELAKKLG-AEAVAL---EELLEALAEADVVISSTS 247 (414)
T ss_pred cccCeEEEEcc-cHHHHHHHHHHHhCCC-CEEEEEcCCH--HHHHHHHHHhC-CeeecH---HHHHHhhhhCCEEEEecC
Confidence 35679999999 9999999999998884 6888888754 33344443221 233322 467899999999999877
Q ss_pred CCC
Q 016424 119 VPR 121 (390)
Q Consensus 119 ~p~ 121 (390)
.|.
T Consensus 248 a~~ 250 (414)
T COG0373 248 APH 250 (414)
T ss_pred CCc
Confidence 664
Done!