BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016425
         (390 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
 pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
 pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
 pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
          Length = 422

 Score = 32.0 bits (71), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 38  YIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVI 89
           YI  F L  G+LLP N+F+  + Y  Y +    +D +   A  L+   CL +
Sbjct: 366 YIQEFCLANGYLLPKNSFLKEIFYLKYYF----LDMVTEDAKTLLKEICLKL 413


>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
 pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
          Length = 413

 Score = 32.0 bits (71), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 38  YIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCL 87
           YI  F L  G+LLP N+F+  + Y  Y +    +D +   A  L+   CL
Sbjct: 366 YIQEFCLANGYLLPKNSFLKEIFYLKYYF----LDMVTEDAKTLLKEICL 411


>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
          Length = 413

 Score = 32.0 bits (71), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 38  YIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCL 87
           YI  F L  G+LLP N+F+  + Y  Y +    +D +   A  L+   CL
Sbjct: 366 YIQEFCLANGYLLPKNSFLKEIFYLKYYF----LDMVTEDAKTLLKEICL 411


>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
           Inducible P47 Resistance Gtpases
          Length = 413

 Score = 32.0 bits (71), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 38  YIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCL 87
           YI  F L  G+LLP N+F+  + Y  Y +    +D +   A  L+   CL
Sbjct: 366 YIQEFCLANGYLLPKNSFLKEIFYLKYYF----LDMVTEDAKTLLKEICL 411


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.145    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,711,689
Number of Sequences: 62578
Number of extensions: 369093
Number of successful extensions: 926
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 4
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)