Query 016425
Match_columns 390
No_of_seqs 112 out of 711
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1479 Nucleoside transporter 100.0 1.5E-73 3.3E-78 557.8 26.7 359 26-390 8-404 (406)
2 TIGR00939 2a57 Equilibrative N 100.0 6.6E-68 1.4E-72 534.9 27.3 345 41-389 1-432 (437)
3 PF01733 Nucleoside_tran: Nucl 100.0 1.7E-53 3.6E-58 413.5 -0.1 250 139-389 1-308 (309)
4 PF02487 CLN3: CLN3 protein; 99.9 1.1E-26 2.4E-31 229.8 17.4 335 37-388 1-394 (402)
5 KOG3880 Predicted small molecu 99.8 6E-22 1.3E-26 185.7 5.2 331 37-387 13-400 (409)
6 TIGR00895 2A0115 benzoate tran 98.3 0.00011 2.3E-09 72.2 20.9 105 275-385 289-394 (398)
7 TIGR00881 2A0104 phosphoglycer 98.3 4.3E-05 9.3E-10 74.4 17.4 105 50-166 9-115 (379)
8 TIGR00893 2A0114 d-galactonate 98.2 0.00016 3.5E-09 70.3 19.5 104 52-167 10-115 (399)
9 TIGR00892 2A0113 monocarboxyla 98.1 0.00019 4.2E-09 73.4 19.5 107 275-385 280-389 (455)
10 PF07690 MFS_1: Major Facilita 98.1 0.00024 5.2E-09 68.6 18.3 303 51-381 11-351 (352)
11 TIGR00890 2A0111 Oxalate/Forma 98.1 0.00049 1.1E-08 66.8 20.2 107 274-385 243-351 (377)
12 PRK11273 glpT sn-glycerol-3-ph 98.0 0.0007 1.5E-08 69.0 20.9 104 55-168 48-154 (452)
13 TIGR00879 SP MFS transporter, 98.0 0.0017 3.8E-08 65.0 23.0 82 77-167 78-160 (481)
14 PRK11551 putative 3-hydroxyphe 98.0 0.0012 2.5E-08 65.8 20.9 105 275-385 259-364 (406)
15 TIGR00900 2A0121 H+ Antiporter 97.9 0.002 4.4E-08 62.3 21.0 106 275-385 251-357 (365)
16 PRK11663 regulatory protein Uh 97.9 0.0017 3.8E-08 65.7 21.2 82 74-167 62-144 (434)
17 PRK05122 major facilitator sup 97.9 0.0031 6.6E-08 62.7 22.3 102 277-384 255-357 (399)
18 COG2814 AraJ Arabinose efflux 97.8 0.0029 6.2E-08 63.4 20.7 274 78-386 56-356 (394)
19 PRK10489 enterobactin exporter 97.8 0.0052 1.1E-07 61.6 23.1 103 276-385 264-368 (417)
20 PRK10213 nepI ribonucleoside t 97.8 0.0061 1.3E-07 61.0 23.2 104 275-385 256-360 (394)
21 TIGR01299 synapt_SV2 synaptic 97.8 0.0092 2E-07 64.8 25.7 105 275-385 599-704 (742)
22 TIGR00891 2A0112 putative sial 97.8 0.011 2.5E-07 58.1 24.3 108 48-167 24-133 (405)
23 TIGR00710 efflux_Bcr_CflA drug 97.8 0.0054 1.2E-07 60.1 21.5 106 50-167 19-126 (385)
24 COG0738 FucP Fucose permease [ 97.7 0.0017 3.7E-08 64.6 15.7 126 27-166 8-135 (422)
25 PRK12382 putative transporter; 97.7 0.012 2.6E-07 58.3 22.1 102 277-385 255-358 (392)
26 TIGR00712 glpT glycerol-3-phos 97.5 0.0054 1.2E-07 62.2 17.8 107 51-167 42-151 (438)
27 cd06174 MFS The Major Facilita 97.5 0.023 4.9E-07 54.3 20.7 298 48-385 11-321 (352)
28 PRK11652 emrD multidrug resist 97.5 0.037 8.1E-07 54.9 22.5 55 330-385 300-354 (394)
29 PRK03545 putative arabinose tr 97.4 0.047 1E-06 54.2 22.8 96 59-166 32-129 (390)
30 PRK10133 L-fucose transporter; 97.4 0.029 6.2E-07 57.2 21.5 119 37-168 31-150 (438)
31 PRK09874 drug efflux system pr 97.4 0.04 8.7E-07 54.6 22.2 105 275-385 262-367 (408)
32 TIGR00898 2A0119 cation transp 97.4 0.034 7.3E-07 57.2 22.2 103 277-384 361-465 (505)
33 TIGR00711 efflux_EmrB drug res 97.4 0.043 9.3E-07 55.8 22.3 108 275-385 295-404 (485)
34 PF05977 MFS_3: Transmembrane 97.3 0.045 9.7E-07 57.3 21.7 318 37-385 11-363 (524)
35 PRK08633 2-acyl-glycerophospho 97.3 0.018 3.8E-07 65.4 19.8 105 275-385 273-378 (1146)
36 PLN00028 nitrate transmembrane 97.3 0.086 1.9E-06 54.2 23.2 21 275-295 292-312 (476)
37 PRK12307 putative sialic acid 97.2 0.093 2E-06 52.5 22.0 97 59-167 41-139 (426)
38 PRK03699 putative transporter; 97.1 0.1 2.2E-06 52.0 21.6 101 276-384 246-348 (394)
39 PRK15402 multidrug efflux syst 97.1 0.059 1.3E-06 53.7 19.7 119 36-166 13-133 (406)
40 PRK10504 putative transporter; 97.1 0.094 2E-06 53.4 20.9 52 334-385 358-409 (471)
41 PF06609 TRI12: Fungal trichot 97.0 0.17 3.8E-06 53.5 22.8 102 279-385 357-461 (599)
42 TIGR00885 fucP L-fucose:H+ sym 96.9 0.13 2.9E-06 51.8 20.5 120 35-167 6-127 (410)
43 PRK10077 xylE D-xylose transpo 96.9 0.16 3.6E-06 51.5 21.4 93 75-167 60-153 (479)
44 KOG2504 Monocarboxylate transp 96.9 0.058 1.3E-06 56.2 18.0 101 275-381 337-440 (509)
45 PRK09556 uhpT sugar phosphate 96.9 0.015 3.3E-07 59.4 13.1 103 57-166 50-154 (467)
46 PRK11128 putative 3-phenylprop 96.8 0.16 3.5E-06 50.3 19.6 101 277-384 246-348 (382)
47 TIGR02332 HpaX 4-hydroxyphenyl 96.7 0.24 5.2E-06 49.8 20.3 99 57-167 29-129 (412)
48 TIGR00883 2A0106 metabolite-pr 96.7 0.092 2E-06 51.1 16.4 103 276-382 260-366 (394)
49 TIGR00897 2A0118 polyol permea 96.6 0.71 1.5E-05 46.0 22.8 105 276-385 262-370 (402)
50 TIGR00902 2A0127 phenyl propri 96.6 0.51 1.1E-05 46.8 21.5 98 277-385 246-349 (382)
51 TIGR00886 2A0108 nitrite extru 96.6 0.22 4.7E-06 48.4 18.5 106 51-167 16-123 (366)
52 PRK03633 putative MFS family t 96.5 0.59 1.3E-05 46.2 21.0 100 276-385 240-341 (381)
53 TIGR00899 2A0120 sugar efflux 96.3 1 2.2E-05 43.7 21.7 55 330-385 289-343 (375)
54 PRK03893 putative sialic acid 96.3 0.45 9.7E-06 48.6 19.7 103 53-167 37-141 (496)
55 PRK06814 acylglycerophosphoeth 96.3 0.21 4.5E-06 57.0 18.4 60 327-386 332-391 (1140)
56 PRK10642 proline/glycine betai 96.2 0.6 1.3E-05 48.1 20.0 76 85-166 72-150 (490)
57 PRK11102 bicyclomycin/multidru 96.2 0.68 1.5E-05 45.3 19.6 78 77-166 33-111 (377)
58 PRK14995 methyl viologen resis 96.2 0.63 1.4E-05 48.0 20.2 56 330-385 352-407 (495)
59 COG2271 UhpC Sugar phosphate p 96.2 0.15 3.2E-06 51.4 14.4 136 235-385 252-399 (448)
60 PRK15011 sugar efflux transpor 96.1 0.8 1.7E-05 45.5 19.6 53 332-385 308-360 (393)
61 PRK11043 putative transporter; 96.1 1.7 3.8E-05 43.0 22.9 110 45-166 15-126 (401)
62 TIGR00894 2A0114euk Na(+)-depe 96.0 0.78 1.7E-05 46.6 19.7 82 76-167 82-164 (465)
63 PRK10091 MFS transport protein 96.0 1.7 3.6E-05 43.0 21.3 113 38-166 9-123 (382)
64 PRK10473 multidrug efflux syst 96.0 1.2 2.6E-05 44.0 20.2 107 49-167 16-124 (392)
65 KOG2563 Permease of the major 95.8 0.9 2E-05 46.3 18.3 119 33-159 42-160 (480)
66 PRK11902 ampG muropeptide tran 95.6 2.8 6.1E-05 41.7 22.9 25 40-64 3-27 (402)
67 TIGR00896 CynX cyanate transpo 95.5 2.3 4.9E-05 41.4 19.6 93 57-162 21-114 (355)
68 KOG2533 Permease of the major 95.2 0.63 1.4E-05 48.4 15.2 114 179-295 212-333 (495)
69 KOG2325 Predicted transporter/ 95.1 0.27 5.9E-06 50.7 12.2 49 335-383 394-442 (488)
70 PRK09705 cynX putative cyanate 95.1 3.9 8.5E-05 40.6 20.4 115 39-166 12-129 (393)
71 PRK09528 lacY galactoside perm 95.1 1.6 3.5E-05 43.7 17.7 38 328-365 314-351 (420)
72 TIGR00882 2A0105 oligosacchari 95.1 2 4.2E-05 42.6 18.1 55 328-382 306-361 (396)
73 TIGR00924 yjdL_sub1_fam amino 95.0 3.4 7.4E-05 42.5 20.3 61 327-387 379-439 (475)
74 TIGR00887 2A0109 phosphate:H+ 95.0 5.1 0.00011 41.3 21.8 89 74-168 60-149 (502)
75 TIGR02718 sider_RhtX_FptX side 94.8 4.7 0.0001 39.8 23.4 29 38-66 3-31 (390)
76 TIGR00889 2A0110 nucleoside tr 94.7 0.8 1.7E-05 46.2 14.4 108 275-385 255-365 (418)
77 PRK10054 putative transporter; 94.5 5.7 0.00012 39.6 21.2 38 79-116 52-89 (395)
78 TIGR00792 gph sugar (Glycoside 94.4 6 0.00013 39.4 21.9 105 276-385 262-374 (437)
79 TIGR00901 2A0125 AmpG-related 94.3 3 6.5E-05 40.4 17.0 41 330-370 310-350 (356)
80 KOG4255 Uncharacterized conser 94.2 5.6 0.00012 39.0 17.7 137 37-178 12-155 (439)
81 PRK11646 multidrug resistance 94.2 6.7 0.00014 39.1 22.2 54 332-385 300-353 (400)
82 PRK15403 multidrug efflux syst 94.2 7 0.00015 39.2 23.3 78 78-167 59-137 (413)
83 PRK11195 lysophospholipid tran 94.1 6.8 0.00015 39.0 22.0 79 73-166 41-120 (393)
84 TIGR00903 2A0129 major facilit 94.1 5.7 0.00012 39.4 18.7 105 51-167 6-111 (368)
85 TIGR00879 SP MFS transporter, 94.0 0.42 9.2E-06 47.6 10.5 110 273-385 73-183 (481)
86 PRK15075 citrate-proton sympor 93.9 5.2 0.00011 40.3 18.3 32 86-117 72-103 (434)
87 KOG2532 Permease of the major 93.7 7.1 0.00015 40.3 18.9 77 78-164 81-157 (466)
88 PRK09952 shikimate transporter 93.5 9.5 0.00021 38.5 21.0 33 334-366 348-380 (438)
89 PF13347 MFS_2: MFS/sugar tran 93.5 1.2 2.6E-05 44.8 12.8 106 48-163 237-343 (428)
90 PRK09584 tppB putative tripept 93.4 11 0.00024 39.0 22.5 59 327-385 380-438 (500)
91 PRK10207 dipeptide/tripeptide 93.3 11 0.00025 38.9 21.9 58 328-385 378-435 (489)
92 PRK09848 glucuronide transport 93.2 1.6 3.5E-05 44.2 13.3 104 49-162 241-346 (448)
93 PRK10429 melibiose:sodium symp 92.8 1.4 3E-05 45.2 12.1 106 51-163 246-352 (473)
94 KOG3764 Vesicular amine transp 92.7 1.1 2.4E-05 45.0 10.7 93 74-178 107-203 (464)
95 PRK11010 ampG muropeptide tran 92.6 14 0.00031 38.1 21.3 117 38-166 14-139 (491)
96 PRK10489 enterobactin exporter 92.4 2 4.3E-05 42.9 12.4 79 78-168 267-346 (417)
97 cd06174 MFS The Major Facilita 92.2 0.65 1.4E-05 44.1 8.4 107 274-387 37-145 (352)
98 TIGR00898 2A0119 cation transp 91.8 1.1 2.3E-05 46.1 10.0 112 270-387 126-238 (505)
99 TIGR01272 gluP glucose/galacto 91.7 10 0.00022 36.6 16.1 32 134-165 9-41 (310)
100 TIGR00902 2A0127 phenyl propri 90.6 4.7 0.0001 39.8 13.0 79 78-168 248-326 (382)
101 PF13347 MFS_2: MFS/sugar tran 90.4 21 0.00045 35.8 18.1 61 327-387 313-380 (428)
102 TIGR00900 2A0121 H+ Antiporter 90.4 1.3 2.8E-05 42.5 8.4 112 274-387 37-150 (365)
103 KOG0569 Permease of the major 90.2 25 0.00055 36.5 21.1 31 347-377 386-416 (485)
104 PRK11646 multidrug resistance 90.2 1.3 2.8E-05 44.3 8.4 139 240-385 15-155 (400)
105 TIGR00792 gph sugar (Glycoside 89.1 3.9 8.4E-05 40.8 11.0 101 51-162 237-338 (437)
106 TIGR00710 efflux_Bcr_CflA drug 88.7 2.7 5.9E-05 40.9 9.4 106 275-386 44-150 (385)
107 TIGR00880 2_A_01_02 Multidrug 88.6 1.8 3.8E-05 34.9 6.8 58 329-386 51-108 (141)
108 PRK10213 nepI ribonucleoside t 88.6 4.8 0.0001 40.1 11.2 105 276-386 60-165 (394)
109 TIGR00893 2A0114 d-galactonate 88.5 2.1 4.5E-05 41.3 8.4 105 275-386 33-139 (399)
110 KOG2325 Predicted transporter/ 88.3 3.2 6.9E-05 43.0 9.7 148 235-386 34-190 (488)
111 TIGR00895 2A0115 benzoate tran 88.3 3.9 8.5E-05 39.7 10.2 104 275-385 56-161 (398)
112 TIGR00887 2A0109 phosphate:H+ 88.2 2.4 5.2E-05 43.7 9.0 112 275-387 60-173 (502)
113 PRK12382 putative transporter; 87.9 2.8 6E-05 41.4 8.9 117 270-386 50-169 (392)
114 TIGR02332 HpaX 4-hydroxyphenyl 87.8 2.2 4.8E-05 42.8 8.3 105 276-386 48-153 (412)
115 TIGR00886 2A0108 nitrite extru 87.8 2.3 5E-05 41.2 8.2 105 275-385 41-146 (366)
116 PRK05122 major facilitator sup 87.0 2.3 4.9E-05 42.1 7.8 114 273-386 53-169 (399)
117 TIGR00891 2A0112 putative sial 87.0 4.1 9E-05 39.7 9.6 106 275-386 51-157 (405)
118 PRK09874 drug efflux system pr 86.8 5.6 0.00012 39.1 10.5 104 275-385 58-162 (408)
119 PRK11128 putative 3-phenylprop 86.7 4.3 9.2E-05 40.1 9.5 77 80-168 250-326 (382)
120 PRK15034 nitrate/nitrite trans 86.5 43 0.00093 34.6 19.9 76 85-167 85-160 (462)
121 TIGR00805 oat sodium-independe 86.4 29 0.00063 37.3 16.2 63 57-119 54-117 (633)
122 PF07690 MFS_1: Major Facilita 85.7 3.4 7.3E-05 39.4 8.0 105 276-387 37-143 (352)
123 PRK11551 putative 3-hydroxyphe 85.7 5 0.00011 39.7 9.4 80 76-167 261-341 (406)
124 KOG0569 Permease of the major 85.6 3.1 6.8E-05 43.1 8.0 108 276-387 65-174 (485)
125 TIGR01299 synapt_SV2 synaptic 85.4 3.3 7.1E-05 45.3 8.5 106 276-387 207-313 (742)
126 TIGR00711 efflux_EmrB drug res 84.7 3.5 7.5E-05 41.8 7.9 103 277-385 43-146 (485)
127 PRK11462 putative transporter; 84.3 11 0.00024 38.6 11.4 52 51-102 243-295 (460)
128 PRK15403 multidrug efflux syst 83.5 7.1 0.00015 39.2 9.5 104 276-385 56-160 (413)
129 TIGR01272 gluP glucose/galacto 83.5 20 0.00044 34.5 12.4 77 77-166 185-262 (310)
130 PRK10054 putative transporter; 83.4 6.4 0.00014 39.2 9.1 105 276-387 48-154 (395)
131 TIGR00712 glpT glycerol-3-phos 83.0 8.7 0.00019 38.7 10.0 105 276-382 66-171 (438)
132 KOG0255 Synaptic vesicle trans 82.8 7.6 0.00016 40.2 9.6 113 269-387 116-229 (521)
133 TIGR00806 rfc RFC reduced fola 82.8 62 0.0014 33.7 15.9 76 80-167 72-147 (511)
134 PRK09669 putative symporter Ya 82.5 30 0.00065 34.9 13.7 95 58-162 251-346 (444)
135 PRK10091 MFS transport protein 82.3 6.7 0.00015 38.6 8.7 103 275-383 42-145 (382)
136 PLN00028 nitrate transmembrane 82.2 14 0.0003 37.9 11.2 30 139-168 352-381 (476)
137 PRK03633 putative MFS family t 82.1 7.2 0.00016 38.4 8.8 107 273-385 43-150 (381)
138 PRK11663 regulatory protein Uh 82.1 9.3 0.0002 38.5 9.8 105 275-385 62-167 (434)
139 PRK08633 2-acyl-glycerophospho 82.0 4.5 9.8E-05 46.0 8.2 109 275-387 51-161 (1146)
140 PRK09669 putative symporter Ya 81.7 61 0.0013 32.6 23.1 57 330-386 320-383 (444)
141 PF03209 PUCC: PUCC protein; 81.5 64 0.0014 32.7 21.1 72 275-351 248-323 (403)
142 PRK03545 putative arabinose tr 80.1 11 0.00023 37.2 9.3 59 328-386 96-154 (390)
143 PRK03699 putative transporter; 79.8 13 0.00028 36.7 9.8 96 276-377 47-143 (394)
144 PTZ00207 hypothetical protein; 79.6 19 0.00042 38.3 11.4 20 276-295 396-415 (591)
145 PRK11102 bicyclomycin/multidru 79.3 8.9 0.00019 37.3 8.4 105 275-385 30-135 (377)
146 COG2814 AraJ Arabinose efflux 79.3 5.7 0.00012 40.0 6.9 100 276-381 53-153 (394)
147 PF03825 Nuc_H_symport: Nucleo 79.3 34 0.00074 34.4 12.7 87 79-172 252-342 (400)
148 PRK15011 sugar efflux transpor 79.2 49 0.0011 32.7 13.7 20 81-100 263-282 (393)
149 PRK11652 emrD multidrug resist 78.9 14 0.00031 36.3 9.8 104 276-385 48-152 (394)
150 PRK11273 glpT sn-glycerol-3-ph 78.6 14 0.0003 37.5 9.7 102 275-378 67-169 (452)
151 PRK09528 lacY galactoside perm 78.4 17 0.00036 36.3 10.2 77 79-167 271-348 (420)
152 PRK10473 multidrug efflux syst 78.3 11 0.00024 37.1 8.7 106 275-386 42-148 (392)
153 PRK10077 xylE D-xylose transpo 78.2 11 0.00023 38.2 8.8 110 275-386 59-177 (479)
154 TIGR00890 2A0111 Oxalate/Forma 77.6 9 0.00019 36.7 7.7 41 76-116 246-286 (377)
155 PRK10504 putative transporter; 77.5 15 0.00033 37.1 9.7 58 328-385 97-154 (471)
156 TIGR00883 2A0106 metabolite-pr 77.0 6.8 0.00015 37.8 6.7 29 139-167 316-345 (394)
157 TIGR00892 2A0113 monocarboxyla 76.8 56 0.0012 33.2 13.6 29 139-167 337-366 (455)
158 KOG1330 Sugar transporter/spin 76.7 98 0.0021 32.0 17.9 80 74-165 72-152 (493)
159 PRK10406 alpha-ketoglutarate t 76.5 25 0.00055 35.2 10.9 54 332-385 127-180 (432)
160 PRK15034 nitrate/nitrite trans 76.3 17 0.00038 37.4 9.6 107 277-385 76-183 (462)
161 PRK15402 multidrug efflux syst 76.1 24 0.00052 34.8 10.5 103 276-384 53-156 (406)
162 TIGR00881 2A0104 phosphoglycer 75.6 5 0.00011 38.6 5.3 101 275-382 34-136 (379)
163 KOG0255 Synaptic vesicle trans 75.4 1E+02 0.0022 31.7 16.6 55 332-386 409-463 (521)
164 PRK09556 uhpT sugar phosphate 75.4 5 0.00011 40.9 5.4 56 330-385 123-178 (467)
165 PRK12307 putative sialic acid 75.2 12 0.00027 37.1 8.1 105 275-385 57-162 (426)
166 TIGR00894 2A0114euk Na(+)-depe 73.6 15 0.00032 37.2 8.4 107 275-385 80-187 (465)
167 TIGR00897 2A0118 polyol permea 73.1 20 0.00044 35.5 9.1 108 275-385 52-162 (402)
168 PF00083 Sugar_tr: Sugar (and 72.1 0.8 1.7E-05 46.2 -1.4 112 273-387 48-160 (451)
169 PRK06814 acylglycerophosphoeth 71.7 16 0.00034 41.9 8.8 86 298-387 80-166 (1140)
170 PRK11195 lysophospholipid tran 71.4 16 0.00034 36.3 7.8 53 333-385 92-144 (393)
171 TIGR00889 2A0110 nucleoside tr 71.0 75 0.0016 31.9 12.7 83 77-167 258-341 (418)
172 TIGR00901 2A0125 AmpG-related 70.3 25 0.00055 33.9 8.9 57 331-387 85-141 (356)
173 PRK15075 citrate-proton sympor 69.3 50 0.0011 33.1 11.1 54 333-386 121-174 (434)
174 KOG3626 Organic anion transpor 68.7 70 0.0015 35.0 12.2 71 41-115 106-177 (735)
175 PRK03893 putative sialic acid 67.5 22 0.00048 36.1 8.2 104 276-385 60-164 (496)
176 COG2223 NarK Nitrate/nitrite t 67.5 80 0.0017 32.1 11.6 99 59-162 242-341 (417)
177 PRK10133 L-fucose transporter; 67.1 65 0.0014 32.6 11.4 76 77-165 302-378 (438)
178 KOG2504 Monocarboxylate transp 66.7 1E+02 0.0022 32.2 12.9 67 78-156 341-409 (509)
179 PRK14995 methyl viologen resis 65.2 46 0.001 34.2 10.0 84 297-386 68-152 (495)
180 TIGR00885 fucP L-fucose:H+ sym 65.0 30 0.00065 34.7 8.4 60 328-387 93-152 (410)
181 PRK11043 putative transporter; 63.9 58 0.0013 32.0 10.2 133 244-383 15-148 (401)
182 PRK11902 ampG muropeptide tran 63.3 25 0.00055 34.8 7.4 55 332-386 97-151 (402)
183 KOG3762 Predicted transporter 63.0 61 0.0013 34.2 10.0 120 37-173 376-501 (618)
184 TIGR00788 fbt folate/biopterin 61.9 1.9E+02 0.0042 29.5 21.3 55 331-385 353-407 (468)
185 PF05978 UNC-93: Ion channel r 61.7 72 0.0016 27.7 9.0 109 269-387 39-147 (156)
186 PRK10642 proline/glycine betai 61.5 34 0.00074 35.1 8.2 107 278-386 64-175 (490)
187 KOG3098 Uncharacterized conser 60.9 2.1E+02 0.0045 29.6 13.9 38 134-171 352-390 (461)
188 PRK10297 PTS system N,N'-diace 60.3 37 0.00081 34.9 8.1 64 149-218 378-445 (452)
189 PF07672 MFS_Mycoplasma: Mycop 59.6 1.2E+02 0.0027 28.8 10.7 107 271-379 141-253 (267)
190 KOG0254 Predicted transporter 59.4 1.5E+02 0.0033 30.6 12.6 82 73-166 92-173 (513)
191 PF11700 ATG22: Vacuole efflux 58.0 2.3E+02 0.0051 29.3 17.5 104 273-379 319-427 (477)
192 PRK09584 tppB putative tripept 57.4 55 0.0012 33.9 8.9 74 91-167 341-415 (500)
193 PRK09952 shikimate transporter 57.3 42 0.0009 33.9 7.9 54 332-385 128-181 (438)
194 KOG2533 Permease of the major 57.0 61 0.0013 33.8 9.1 69 39-107 276-348 (495)
195 PF03825 Nuc_H_symport: Nucleo 56.7 2.2E+02 0.0048 28.6 19.4 49 337-385 309-358 (400)
196 KOG0254 Predicted transporter 56.3 48 0.001 34.3 8.3 106 275-386 93-199 (513)
197 TIGR00896 CynX cyanate transpo 55.6 1.8E+02 0.004 27.8 11.9 41 75-115 237-278 (355)
198 TIGR00899 2A0120 sugar efflux 55.1 2E+02 0.0043 27.5 12.2 26 141-166 294-320 (375)
199 PRK09705 cynX putative cyanate 53.3 59 0.0013 32.1 8.1 104 275-385 48-152 (393)
200 TIGR00903 2A0129 major facilit 53.2 70 0.0015 31.6 8.6 60 328-388 78-137 (368)
201 TIGR00882 2A0105 oligosacchari 52.6 1.3E+02 0.0027 29.6 10.4 106 49-166 228-339 (396)
202 PRK15462 dipeptide/tripeptide 52.4 1E+02 0.0023 32.0 9.9 137 35-174 267-416 (493)
203 PF05977 MFS_3: Transmembrane 51.4 30 0.00066 36.3 5.8 82 298-381 73-155 (524)
204 TIGR00880 2_A_01_02 Multidrug 49.0 1.3E+02 0.0028 23.6 8.3 77 79-167 7-84 (141)
205 TIGR00924 yjdL_sub1_fam amino 46.6 3.4E+02 0.0073 27.8 12.7 67 98-167 347-414 (475)
206 PRK11010 ampG muropeptide tran 46.0 72 0.0016 32.8 7.6 58 330-387 108-165 (491)
207 PRK09848 glucuronide transport 45.6 3.2E+02 0.007 27.3 26.6 56 330-385 320-382 (448)
208 TIGR00806 rfc RFC reduced fola 43.6 1.1E+02 0.0025 31.9 8.4 59 328-387 114-172 (511)
209 PF01306 LacY_symp: LacY proto 41.9 2.5E+02 0.0055 28.5 10.5 71 39-111 225-300 (412)
210 COG2211 MelB Na+/melibiose sym 41.8 3.7E+02 0.0081 27.8 11.8 102 51-162 251-354 (467)
211 PTZ00207 hypothetical protein; 40.8 4.8E+02 0.01 27.9 13.7 18 75-92 396-413 (591)
212 TIGR01301 GPH_sucrose GPH fami 40.6 1.1E+02 0.0025 31.6 8.0 49 338-386 123-173 (477)
213 COG0738 FucP Fucose permease [ 38.2 1.2E+02 0.0026 30.8 7.4 113 37-168 242-357 (422)
214 COG5522 Predicted integral mem 37.3 95 0.002 28.4 5.8 41 27-68 149-189 (236)
215 KOG0252 Inorganic phosphate tr 35.7 2.2E+02 0.0047 29.7 8.8 82 34-115 36-129 (538)
216 TIGR02718 sider_RhtX_FptX side 34.8 2.9E+02 0.0062 26.9 9.7 27 82-108 256-282 (390)
217 PRK10207 dipeptide/tripeptide 33.2 2.7E+02 0.0059 28.7 9.5 68 99-168 345-413 (489)
218 KOG2816 Predicted transporter 30.8 1.5E+02 0.0033 30.6 7.0 50 338-387 119-170 (463)
219 PF05968 Bacillus_PapR: Bacill 29.2 52 0.0011 22.3 2.1 20 362-381 2-21 (48)
220 PF13038 DUF3899: Domain of un 29.1 1.4E+02 0.0031 23.1 5.2 15 231-245 66-80 (92)
221 COG5547 Small integral membran 28.9 1.6E+02 0.0035 21.1 4.6 19 99-117 7-25 (62)
222 KOG4686 Predicted sugar transp 27.6 6.1E+02 0.013 25.1 9.8 54 34-87 262-318 (459)
223 PF06912 DUF1275: Protein of u 26.1 4.7E+02 0.01 23.3 9.8 78 271-349 50-130 (209)
224 TIGR02230 ATPase_gene1 F0F1-AT 25.4 1.2E+02 0.0025 24.5 4.0 46 44-92 42-93 (100)
225 COG2271 UhpC Sugar phosphate p 24.5 7.9E+02 0.017 25.3 12.0 112 42-161 255-371 (448)
226 PF05978 UNC-93: Ion channel r 24.5 4.6E+02 0.01 22.6 9.0 117 44-174 1-128 (156)
227 PF05915 DUF872: Eukaryotic pr 21.1 1E+02 0.0022 25.5 2.9 17 34-50 41-57 (115)
228 PRK10406 alpha-ketoglutarate t 20.5 8.4E+02 0.018 24.1 22.8 78 85-166 78-156 (432)
No 1
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-73 Score=557.82 Aligned_cols=359 Identities=38% Similarity=0.675 Sum_probs=309.5
Q ss_pred CCCCCCCccchhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccchhhhhhHH----HHHHHHHHHHHHhcCCCCcce
Q 016425 26 HQKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYM----LVGLFCLVIIVFYAHKSDAWV 101 (390)
Q Consensus 26 ~~~~p~d~~~~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~ 101 (390)
++.+|||+++.+|++|+++|+|+|+|||+++|+.|||+++||++++.+.|+..|+ +++++....+.+...| .
T Consensus 8 ~~~~p~d~~~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~----~ 83 (406)
T KOG1479|consen 8 DSPEPEDGYNLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR----L 83 (406)
T ss_pred cCCCcccccccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 4789999999999999999999999999999999999999999887666665555 4555555555555544 5
Q ss_pred EehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhhhHHH---
Q 016425 102 RINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS--- 178 (390)
Q Consensus 102 Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~~~s--- 178 (390)
|...+..+..+..+++++++.++.+++.|...+|+++|++++++|.++|+.|||+||++|.||++|+||+|+||++|
T Consensus 84 ~~~~~~~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l 163 (406)
T KOG1479|consen 84 RTRVGYLLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTL 163 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHH
Confidence 55555555555555555556667677889999999999999999999999999999999999999999999999988
Q ss_pred ------------------------HHHHHHHHHHHHHHHHhccchhHHhhhhhhhh----hhhhhhhccCCCCcccchhH
Q 016425 179 ------------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQA----VNEEKEEKGSLTGSMWRSAV 230 (390)
Q Consensus 179 ------------------------ia~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~----~~e~~e~~~~~~~~~~~~~~ 230 (390)
++++++++|+++|..+.|+|++|||++++.++ .+|+.|+|++.++++. +.
T Consensus 164 ~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~ 241 (406)
T KOG1479|consen 164 TSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSKLAAEGIESDSSLSNEDD--SL 241 (406)
T ss_pred HHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhcccccccccccccccccccccccc--hH
Confidence 88999999999999999999999998876543 1223334444433323 89
Q ss_pred HHHHHHHHHHhHHHHHHhhhhceeccceEeeeeccCCCchhHHHHHHHH-HHhhhhhhhhhhhhhhccCchhHHHHHHHH
Q 016425 231 WHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAG-YNVFDLVGKSLTAIYLLENEKVAIGGCFAR 309 (390)
Q Consensus 231 ~~v~k~i~~~~~~~~l~f~vTl~vFPgi~~~~~~~~~~~~w~~~~~~~~-FnvgD~iGR~~~~~~~~~~~~~l~~lsl~R 309 (390)
|+++||+++++++++++|+||+++|||+.++..+++..++|++.+...+ ||++|++||.++.+.+++++|.+++++++|
T Consensus 242 ~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR 321 (406)
T KOG1479|consen 242 WDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLR 321 (406)
T ss_pred HHHHHHHHHHhhchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHH
Confidence 9999999999999999999999999999876444455579999888888 999999999999999999999999999999
Q ss_pred HHHHhhhhhcccC--CcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 310 LLFFPLFLGCLHG--PKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 310 ~ifiplf~~~~~~--p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
++|||+|.+||+. |.++++|+++++++.++|+||||++++.|++|||+++++|||.||++|++++..|+++|+++|++
T Consensus 322 ~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 322 LLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred HHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999984 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhC
Q 016425 388 WVI 390 (390)
Q Consensus 388 ~~~ 390 (390)
|++
T Consensus 402 ~~~ 404 (406)
T KOG1479|consen 402 FVI 404 (406)
T ss_pred HHH
Confidence 974
No 2
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=100.00 E-value=6.6e-68 Score=534.88 Aligned_cols=345 Identities=34% Similarity=0.591 Sum_probs=291.9
Q ss_pred HHHHhhhhhhHHHHhhcchhhhhcccCCCc---------------cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehh
Q 016425 41 YFTLGLGFLLPWNAFITAVDYFSYLYPEAS---------------VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINV 105 (390)
Q Consensus 41 f~llGi~~L~pwn~~ita~dyf~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~ 105 (390)
|+++|+|+|+|||+++||.|||+++|++++ ++++++++.++++++....+....+|+|.+.|+..
T Consensus 1 f~llG~~~L~pWN~fitA~~Yf~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~ 80 (437)
T TIGR00939 1 FFMLGVGVLLPWNAFITAPQYFIEYYKYAQNIPEAIPSSSKMWKHFNTYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLG 80 (437)
T ss_pred CEEEeeeccchhHHHhhHHHHHHHHhccCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHH
Confidence 578999999999999999999999886542 34566779999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhhhHHH-------
Q 016425 106 GLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS------- 178 (390)
Q Consensus 106 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~~~s------- 178 (390)
+++++++.+++..++ +..+. ....+|+++|+++++.|+++|+.|++.+|++|.||++|+|++|+|||+|
T Consensus 81 ~lv~~~~~~~~~~~l--~~~~~--~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 81 GLVILLVVVILVMVL--VKVQT--SETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred HHHHHHHHHHHHhhe--eeecC--CcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHH
Confidence 999887777765442 33432 2445899999999999999999999999999999999999999999988
Q ss_pred -----------------------HHHHHHHHHHHHHHHHhccchhHHhhhhhhh----hh------hhhhhhc------c
Q 016425 179 -----------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQ----AV------NEEKEEK------G 219 (390)
Q Consensus 179 -----------------------ia~~~~~~~~~~y~~l~~~~~~~~~~~~~~~----~~------~e~~e~~------~ 219 (390)
++++++++|+++|..+.|+|++|+|.+++++ ++ .+++|++ +
T Consensus 157 ~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (437)
T TIGR00939 157 MILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLPFARYYLQKKLDKGAGEDETKGELRSKAEQNGIPHGGD 236 (437)
T ss_pred HHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhcccccccccccccccccccccccccccc
Confidence 5778889999999999999999999765321 00 0001100 0
Q ss_pred --C-------------CCC--cccchhHHHHHHHHHHHhHHHHHHhhhhceeccceEeeeeccCC-Cch-hHHHHHHHHH
Q 016425 220 --S-------------LTG--SMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITEDVHSEI-LKD-WYGIILIAGY 280 (390)
Q Consensus 220 --~-------------~~~--~~~~~~~~~v~k~i~~~~~~~~l~f~vTl~vFPgi~~~~~~~~~-~~~-w~~~~~~~~F 280 (390)
+ .++ .+.+.++++++||+|++++++|++|++|+++|||++.....++. .++ |++++++++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~f 316 (437)
T TIGR00939 237 QPSPTLVLDWEKEPESPDEPQKPLKTSVWVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLF 316 (437)
T ss_pred cccccccccccccccCCccchhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHH
Confidence 0 000 11357899999999999999999999999999999876433322 344 6999999999
Q ss_pred HhhhhhhhhhhhhhhccCch--hHHHHHHHHHHHHhhhhhcccCC-----cccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 281 NVFDLVGKSLTAIYLLENEK--VAIGGCFARLLFFPLFLGCLHGP-----KFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 281 nvgD~iGR~~~~~~~~~~~~--~l~~lsl~R~ifiplf~~~~~~p-----~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
|+||++||.++.+..++++| ++++++++|++|||+|++||++| .+++||+++++++++||+||||++|++|++
T Consensus 317 NvgD~vGR~~~~~~~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~ 396 (437)
T TIGR00939 317 NLFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCL 396 (437)
T ss_pred HHHHHHHhhhhheeEeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999888776554 89999999999999999999875 378999999999999999999999999999
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWV 389 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~~~ 389 (390)
||++++++|||.||.+|++++++|+++||++|+++.
T Consensus 397 ~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~ 432 (437)
T TIGR00939 397 APRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV 432 (437)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999874
No 3
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=100.00 E-value=1.7e-53 Score=413.52 Aligned_cols=250 Identities=32% Similarity=0.576 Sum_probs=4.0
Q ss_pred HHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhhhHHH---------------------------HHHHHHHHHHHHH
Q 016425 139 VGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS---------------------------VGIVVMVICIVFY 191 (390)
Q Consensus 139 l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~~~s---------------------------ia~~~~~~~~~~y 191 (390)
|+.+++.|+++|++|+|+||++|.||++|+|++|+|||+| ++++++++|+++|
T Consensus 1 m~~v~~~~~~~~~~q~s~~glas~~p~~y~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~~ 80 (309)
T PF01733_consen 1 MISVALIGFANAVLQSSLFGLASLFPPKYTQAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIILY 80 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEHhhhHHHhccHHHHHhcCCHHHHHHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999988 6788899999999
Q ss_pred HHHhccchhHHhhhhhhh----hhhhh-----hhhccC-CC----Cc--c---cchhHHHHHHHHHHHhHHHHHHhhhhc
Q 016425 192 NVAHRLPVIKYHEDLKIQ----AVNEE-----KEEKGS-LT----GS--M---WRSAVWHIVGRVKWYGFGILLIYIVTL 252 (390)
Q Consensus 192 ~~l~~~~~~~~~~~~~~~----~~~e~-----~e~~~~-~~----~~--~---~~~~~~~v~k~i~~~~~~~~l~f~vTl 252 (390)
..+.|+|++|+|.+++.+ +++|+ +|++++ .+ ++ + ...++++++|++|+++++++++|++|+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~i~~~f~vTl 160 (309)
T PF01733_consen 81 FILPRSPFYRYYLEREAKGDERETEEELSSDGEEESESRSEGTFENSKPQEENVFISFWVVLKKIWPYALSIFLVFFVTL 160 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhccChHHHHHHhhhcccchhhhhhhhhhhccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999999776521 11111 011100 00 00 0 123578899999999999999999999
Q ss_pred eeccceEeeeeccC---CCchhH-HHHHHHHHHhhhhhhhhhhhhhhcc--CchhHHHHHHHHHHHHhhhhhcccCC---
Q 016425 253 SIFPGYITEDVHSE---ILKDWY-GIILIAGYNVFDLVGKSLTAIYLLE--NEKVAIGGCFARLLFFPLFLGCLHGP--- 323 (390)
Q Consensus 253 ~vFPgi~~~~~~~~---~~~~w~-~~~~~~~FnvgD~iGR~~~~~~~~~--~~~~l~~lsl~R~ifiplf~~~~~~p--- 323 (390)
++||+++. ..++. ..++|+ |++++++||+||++||.++.+.+++ ++|++++++++|++|||+|++||++|
T Consensus 161 ~~FP~it~-~v~s~~~~~~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~ 239 (309)
T PF01733_consen 161 SVFPGITS-AVQSSNNPDWSSYFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPR 239 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeccceee-eeeccccCCCccHHHHHHHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999954 33332 123344 4789999999999999999999887 78889999999999999999999874
Q ss_pred ---cccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 016425 324 ---KFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFWV 389 (390)
Q Consensus 324 ---~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~~~ 389 (390)
.+++||+++++++++||+||||++|++|++||++++++|||.||.+|++++++|+++||++|+++.
T Consensus 240 ~~~~~~~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~~ 308 (309)
T PF01733_consen 240 YLPVLFNSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLLV 308 (309)
T ss_dssp ---------------------------HHHH--------------------------------------
T ss_pred cCCCcccchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 379999999999999999999999999999999999999999999999999999999999999874
No 4
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=99.94 E-value=1.1e-26 Score=229.82 Aligned_cols=335 Identities=16% Similarity=0.190 Sum_probs=239.8
Q ss_pred hhHHHHHHhhhhhhHHHHhhcch-hhhhcccC--C-----C----------------c-cchhhhhhHHHHHHHHHHHHH
Q 016425 37 AYIIYFTLGLGFLLPWNAFITAV-DYFSYLYP--E-----A----------------S-VDRIFAVAYMLVGLFCLVIIV 91 (390)
Q Consensus 37 ~y~~f~llGi~~L~pwn~~ita~-dyf~~~~~--~-----~----------------~-~~~~~~~~~~~~~l~~~~~~~ 91 (390)
+|+.|+++|++++++|-.+++|+ |--.++.. + + + ......++..+|.++..++++
T Consensus 1 ~~~~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP 80 (402)
T PF02487_consen 1 NYVAFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAP 80 (402)
T ss_pred ChhHHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhH
Confidence 47899999999999999999997 65552211 0 0 0 112356788899999999999
Q ss_pred HhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHH
Q 016425 92 FYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQAL 171 (390)
Q Consensus 92 ~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~ 171 (390)
++.||+|++.|+.....+.++.++++... + ..++.++++++.|+++|+.|.+.+++++.+|+.-+++|
T Consensus 81 ~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-----~-------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~~l~~w 148 (402)
T PF02487_consen 81 FFIHRVPYWIRILICVALSAAGMLLVAFS-----P-------SVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKSSLSAW 148 (402)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhheeec-----c-------chhHHHHHHHHHhhhhhhhHHHHHHHHHhcCccccccc
Confidence 99999999999999999998888865331 1 23678999999999999999999999999999999999
Q ss_pred HhhhHHH-----------------------HHHHHHHHHHHHHHHHhccchhH-Hhhhhhhhh-hhhh-hhhcc-----C
Q 016425 172 VAGTAGS-----------------------VGIVVMVICIVFYNVAHRLPVIK-YHEDLKIQA-VNEE-KEEKG-----S 220 (390)
Q Consensus 172 ~~G~~~s-----------------------ia~~~~~~~~~~y~~l~~~~~~~-~~~~~~~~~-~~e~-~e~~~-----~ 220 (390)
.+|+|.| +...+.++-++.|+.+.+.|-.+ .+.+.+..+ .+|+ .+++. +
T Consensus 149 ssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T PF02487_consen 149 SSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEAEDDLLESETSESKPD 228 (402)
T ss_pred cCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCccccccccccccccccc
Confidence 9999977 11112222333455443333211 111111000 0000 00000 0
Q ss_pred CCCcccchhHHHHHHHHHHHhHHHHHHhhhhceeccceEee--eec-cCCCchhHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 016425 221 LTGSMWRSAVWHIVGRVKWYGFGILLIYIVTLSIFPGYITE--DVH-SEILKDWYGIILIAGYNVFDLVGKSLTAIYLLE 297 (390)
Q Consensus 221 ~~~~~~~~~~~~v~k~i~~~~~~~~l~f~vTl~vFPgi~~~--~~~-~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~~ 297 (390)
...+....+.++..|+..++++.++++|+..+.+-+|+.+. .+. .....+.|+. .-++||+|.+++|+...+.+.
T Consensus 229 ~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~-Y~~~YQ~GVFISRSS~~~~ri- 306 (402)
T PF02487_consen 229 SSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRW-YQLLYQLGVFISRSSLPFFRI- 306 (402)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHH-HHHHHHHHHhhhhcceeeeeh-
Confidence 00111234456778888889999999999888877777432 111 1112333332 256899999999999766543
Q ss_pred CchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHH
Q 016425 298 NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLG 377 (390)
Q Consensus 298 ~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~G 377 (390)
|++|++++++++...++++-.. -+++++.|..+++++.-|+..|-...+++....++++++|||.+-+..+++-+.|
T Consensus 307 --r~lwils~LQ~~nl~~~~l~s~-~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~G 383 (402)
T PF02487_consen 307 --RRLWILSLLQVINLVFLLLQSW-YRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLG 383 (402)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHH
Confidence 6799999999987766654221 2368888888999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 016425 378 LAAGSIVAWFW 388 (390)
Q Consensus 378 l~~Gs~ls~~~ 388 (390)
+++++++++.+
T Consensus 384 I~lAgll~l~l 394 (402)
T PF02487_consen 384 ILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 5
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=99.85 E-value=6e-22 Score=185.69 Aligned_cols=331 Identities=16% Similarity=0.166 Sum_probs=230.4
Q ss_pred hhHHHHHHhhhhhhHHHHhhcch-hhhhcccCCCc--------------c-chhhhhhHHHHHHHHHHHHHHhcCCCCcc
Q 016425 37 AYIIYFTLGLGFLLPWNAFITAV-DYFSYLYPEAS--------------V-DRIFAVAYMLVGLFCLVIIVFYAHKSDAW 100 (390)
Q Consensus 37 ~y~~f~llGi~~L~pwn~~ita~-dyf~~~~~~~~--------------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 100 (390)
.+.+|+++|+++.+.|..+++|. |...++-++.. + .....++.++|+++..+..+++.+|+++.
T Consensus 13 ~~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~ 92 (409)
T KOG3880|consen 13 IAVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFG 92 (409)
T ss_pred cchHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccc
Confidence 88999999999999999999997 55555443211 1 23455789999999999999999999999
Q ss_pred eEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhhhHHH--
Q 016425 101 VRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS-- 178 (390)
Q Consensus 101 ~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~~~s-- 178 (390)
.|+.....+.+..+.++.. .+ .-...|.++.+.++++|+.|-+..++++.+|+.-+..|.+|+|.+
T Consensus 93 ~Ri~~~v~~sa~s~~lVaf-----s~-------s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~~i~~WSSGTGgAGl 160 (409)
T KOG3880|consen 93 FRIALVVLLSALSFFLVAF-----SN-------SVPMSLLGVVFASISSGLGEITFLALSSRYPSIVIAGWSSGTGGAGL 160 (409)
T ss_pred hHHHHHHHHHhcceEEEEe-----cc-------chhHHHhhhhhhhhcCCcceeehhhhhccCCCceeccccCCCCcchh
Confidence 9998887777777665422 22 125578899999999999999999999999999999999999866
Q ss_pred ----------------------HHHHHHHHHHHHHHHHhccchhHHhhhhhhhh-h------hhhhhhccCC-CCcccch
Q 016425 179 ----------------------VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQA-V------NEEKEEKGSL-TGSMWRS 228 (390)
Q Consensus 179 ----------------------ia~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~-~------~e~~e~~~~~-~~~~~~~ 228 (390)
+...+-.+-.++|+.+.|.|-..+-...+... . .++.+|+.+. +.....+
T Consensus 161 iGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~~~~~~~~~~~a~e~~sv~s~~~~~~ 240 (409)
T KOG3880|consen 161 IGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTEIIPSQYLPFEAAEEKSVPSRRLGLK 240 (409)
T ss_pred hhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccceeccCCCCcccccccccCchhhhcHH
Confidence 22222334455677666655443211110000 0 0000011100 0011223
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhceeccceE----e---e-eecc-CCCchhHHHHHHHHHHhhhhhhhhhhhhhhccCc
Q 016425 229 AVWHIVGRVKWYGFGILLIYIVTLSIFPGYI----T---E-DVHS-EILKDWYGIILIAGYNVFDLVGKSLTAIYLLENE 299 (390)
Q Consensus 229 ~~~~v~k~i~~~~~~~~l~f~vTl~vFPgi~----~---~-~~~~-~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~~~~ 299 (390)
+-+..+|...++++.++++|+-.+.+--|+. - . ...+ +....||++ .|++|.|+.|+.......|
T Consensus 241 e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqv----lYQlGVFiSRSS~~~~~~p-- 314 (409)
T KOG3880|consen 241 ETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQV----LYQLGVFISRSSINLFTMP-- 314 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhhe----eeeeeEEEEeccceEEech--
Confidence 3344555555689999999985544333321 1 1 1111 223579986 8999999999998877664
Q ss_pred hhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHH
Q 016425 300 KVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLA 379 (390)
Q Consensus 300 ~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~ 379 (390)
.+|.+.+++++..-.|++-.. -.+.++.|+.+++++.=|+-+|-...+.+-.-.|++++++||.|....+.+-+.|+.
T Consensus 315 -~l~~LailQ~vNl~ff~~~a~-~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~ 392 (409)
T KOG3880|consen 315 -YLWLLAILQFVNLLFFLLQAW-YWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIF 392 (409)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHH
Confidence 789999999887776665331 113556566666666669999877777776668889999999999999999999999
Q ss_pred HHHHHHHh
Q 016425 380 AGSIVAWF 387 (390)
Q Consensus 380 ~Gs~ls~~ 387 (390)
+++.+|+.
T Consensus 393 lA~~lalp 400 (409)
T KOG3880|consen 393 LAGLLALP 400 (409)
T ss_pred HHHHHhcc
Confidence 99999864
No 6
>TIGR00895 2A0115 benzoate transport.
Probab=98.30 E-value=0.00011 Score=72.18 Aligned_cols=105 Identities=17% Similarity=0.002 Sum_probs=66.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.....++++..+|+.+..+..- .++|.+.....+-.+...+... . .++.+...+..+++|+..|-.....+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 362 (398)
T TIGR00895 289 TGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGS-T-----LFSPTLLLLLGAIAGFFVNGGQSGLYAL 362 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-H-----hhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999998766543 2333322222211111111111 1 2234455667778888887777777777
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+..++++|..+-.++.....+|..+|..++
T Consensus 363 ~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 363 MALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 78888888898887777777788888887664
No 7
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.28 E-value=4.3e-05 Score=74.37 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=64.0
Q ss_pred hHHHHhhcchhhhhcccCCCcc-chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425 50 LPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (390)
Q Consensus 50 ~pwn~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~ 128 (390)
..++.+-.+.+++++.+.-+.. ...+...+.+...+..+..-.+.+|...|.-+..+..+..++.+..+.. +
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-- 81 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----T-- 81 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----h--
Confidence 4456666666777776543322 2333445566666666677777888887766667776666665544332 1
Q ss_pred CCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR 166 (390)
Q Consensus 129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~ 166 (390)
.++..++..++.|++.+.......++.+ .+|++
T Consensus 82 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 115 (379)
T TIGR00881 82 -----SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS 115 (379)
T ss_pred -----hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh
Confidence 2344455666778888887777776655 45654
No 8
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.20 E-value=0.00016 Score=70.33 Aligned_cols=104 Identities=12% Similarity=-0.027 Sum_probs=60.9
Q ss_pred HHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCC
Q 016425 52 WNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVG 130 (390)
Q Consensus 52 wn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~ 130 (390)
++.+-.+.+++++++.-++.+ ......+.+...+.....-.+.+|...|.-+..+..+..+.....+.. .
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~---- 80 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----G---- 80 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----c----
Confidence 344444556666655433222 334445666667777777777788876665666666655554443321 1
Q ss_pred cchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHH
Q 016425 131 LYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRY 167 (390)
Q Consensus 131 ~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~ 167 (390)
.++..++..++.|++.+........+.+. +|++.
T Consensus 81 ---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 115 (399)
T TIGR00893 81 ---AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE 115 (399)
T ss_pred ---CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH
Confidence 23444556677888888888777777664 66553
No 9
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.15 E-value=0.00019 Score=73.36 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=66.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcc---CchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLLE---NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~~---~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
....++.+++.++|....+..-+ ++++......+-+.....++++.. .++.+..++..+++|+..|-......
T Consensus 280 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~~~i~~~~~G~~~g~~~~~~~ 355 (455)
T TIGR00892 280 FLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL----AGDYTGLVIYCIFFGLSFGSVGALLF 355 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhchHHHHHH
Confidence 45667889999988776654321 222222222222222222222221 23345556778889999988877777
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
....+.++++++..+-.+......+|-.+|..++
T Consensus 356 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~ 389 (455)
T TIGR00892 356 EVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA 389 (455)
T ss_pred HHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence 7777777888888887788877888877776543
No 10
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.10 E-value=0.00024 Score=68.56 Aligned_cols=303 Identities=14% Similarity=0.121 Sum_probs=144.5
Q ss_pred HHHHhhcchh-hhhcccCCCc-cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425 51 PWNAFITAVD-YFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (390)
Q Consensus 51 pwn~~ita~d-yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~ 128 (390)
.++.+....+ ++.+++.-+. .-......+.+...+.....-.+.+|...|.=+..+.++.+++.++. .. . +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~-~~--~--~-- 83 (352)
T PF07690_consen 11 GFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL-AF--A--S-- 83 (352)
T ss_dssp HHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH-HH--H--C--
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh-hh--h--h--
Confidence 3444444445 6666554222 22344456677777777777778888776554556666665552222 11 1 1
Q ss_pred CCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCH-HHHH---HHHhhhHHH----------------------HHH
Q 016425 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPD-RYMQ---ALVAGTAGS----------------------VGI 181 (390)
Q Consensus 129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~-~~~~---a~~~G~~~s----------------------ia~ 181 (390)
.++..++..++.|++.+.......++.+ .+|+ +... -...+.+++ +..
T Consensus 84 -----~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 84 -----NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred -----hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 1235567777889998888888888766 5666 2222 222222222 111
Q ss_pred HHHHHHHHHHHH-HhccchhHHhhhhhhhhhhhhhhhccCCCCcccchh-HHHHHHH--HHHHhHHHHH---Hhhhhcee
Q 016425 182 VVMVICIVFYNV-AHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSA-VWHIVGR--VKWYGFGILL---IYIVTLSI 254 (390)
Q Consensus 182 ~~~~~~~~~y~~-l~~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~~~~~-~~~v~k~--i~~~~~~~~l---~f~vTl~v 254 (390)
++.+++.++... +.+.|..+ + +++++++.+. .++...+ ++.+.|+ .|...+..++ .+......
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~-----~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPR-----E----RESPKESESK-KPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFF 228 (352)
T ss_dssp HHHHHHHHHHHCCC---STTT-----T------SSTTTT---HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHhhhhhhccccc-----c----cccccccccc-cccccccccccccccchhhhhhhhhhHHHHHHHHhhcc
Confidence 122222111111 11111100 0 0000000000 0001111 2222222 1212222222 22222333
Q ss_pred ccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhhc-cCc-hhHHHHHHHHHHHHhhhhhcccCCcccccchhH
Q 016425 255 FPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL-ENE-KVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPV 332 (390)
Q Consensus 255 FPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~-~~~-~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~ 332 (390)
.|.+..+..+. .+.........+..++..+|+....+..- .++ +........-.+....+.... ..++..+.
T Consensus 229 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 302 (352)
T PF07690_consen 229 LPLYLQEVLGF--SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLP----FSSSPVWL 302 (352)
T ss_dssp HHHHCCHHHHC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSH----HHCHHHHH
T ss_pred cchhhhhccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHH
Confidence 34431111111 11233344567778888777766654432 222 233332222222221111111 11334556
Q ss_pred HHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHH
Q 016425 333 TLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAG 381 (390)
Q Consensus 333 ~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~G 381 (390)
++..+++|+..|........+..+.++++++..+..+....-.+|..+|
T Consensus 303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig 351 (352)
T PF07690_consen 303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG 351 (352)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 6677889999998888888888888888889888888888888777765
No 11
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.09 E-value=0.00049 Score=66.83 Aligned_cols=107 Identities=10% Similarity=0.042 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 274 IILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 274 ~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
.....++++++.+||....+..- .++|+..... +.-.+...++.. .+.. +.+..+...++.|+..|...+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~g~~~g~~~~~~~ 317 (377)
T TIGR00890 243 VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF---IPML--NDVLFLATVALVFFTWGGTISLFP 317 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH---cccc--hhHHHHHHHHHHHHHhccchhccH
Confidence 34567899999999998766432 2334332222 211111111111 1111 222333445667777776655544
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.+.++..++++|..+-.+......+|..+|..+.
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 351 (377)
T TIGR00890 318 SLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351 (377)
T ss_pred HHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 4556666777787777777777777777776543
No 12
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.03 E-value=0.0007 Score=69.01 Aligned_cols=104 Identities=14% Similarity=0.027 Sum_probs=51.9
Q ss_pred hhcchhhhhcccCCCcc--chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcc
Q 016425 55 FITAVDYFSYLYPEASV--DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLY 132 (390)
Q Consensus 55 ~ita~dyf~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 132 (390)
+-.+.+|..+. +-+. .......+.+...+.+...-.+.+|+..|.=+..+.++..+..+...+... . .
T Consensus 48 ~~~~~p~l~~~--g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---~----~- 117 (452)
T PRK11273 48 FALAMPYLVEQ--GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---A----T- 117 (452)
T ss_pred HHHhhHHHHHc--CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---c----c-
Confidence 44456676653 2221 122223455556666666667778887665444555555544443332210 0 0
Q ss_pred hhhHHHHHHHHHhhhhhhhhhchhhh-hcCCCCHHHH
Q 016425 133 DGFTVTVGAVALSGLADALVQGGLIG-AAGELPDRYM 168 (390)
Q Consensus 133 ~~f~~~l~~~~~~g~~~~~~q~s~~~-la~~fp~~~~ 168 (390)
..+...++..++.|++.+........ ++..+|++..
T Consensus 118 ~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r 154 (452)
T PRK11273 118 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER 154 (452)
T ss_pred ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHH
Confidence 12233344455667777666554333 3345787654
No 13
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.01 E-value=0.0017 Score=64.99 Aligned_cols=82 Identities=9% Similarity=0.098 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchh
Q 016425 77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL 156 (390)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~ 156 (390)
..+.+...+...+.-.+.+|+..|.-+..+..+..+..++.... . ....++..++.-++.|++.+..+...
T Consensus 78 ~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 78 SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA-----A----FALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred HHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----c----cccchHHHHHHHHHHHhhhhHHHhHH
Confidence 34555555666666666677665444445555544444332221 1 01123445566778888888887777
Q ss_pred hhhcC-CCCHHH
Q 016425 157 IGAAG-ELPDRY 167 (390)
Q Consensus 157 ~~la~-~fp~~~ 167 (390)
..+.+ .+|++.
T Consensus 149 ~~~i~~~~~~~~ 160 (481)
T TIGR00879 149 PMYLSEIAPKAL 160 (481)
T ss_pred HHHHHccCChhh
Confidence 66655 466654
No 14
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.97 E-value=0.0012 Score=65.81 Aligned_cols=105 Identities=22% Similarity=0.098 Sum_probs=62.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.....++++..+|+....+... .++|+.......-.. +-++.+ .. .++.+...+..+++|+..+-..+..+..
T Consensus 259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~-~~~~~~-~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 332 (406)
T PRK11551 259 LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL-ASLAAL-AA----APSFAGMLLAGFAAGLFVVGGQSVLYAL 332 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHH-Hh----cCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3466788999999998766433 233443322211111 111111 11 1233444555666777665555666667
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.++..++++|..+-.+.......|..+|..+.
T Consensus 333 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 364 (406)
T PRK11551 333 APLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364 (406)
T ss_pred HHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence 78888888888887777777777777776654
No 15
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.92 E-value=0.002 Score=62.26 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=66.2
Q ss_pred HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.....++++..+|+....+... .++++....... ...+.++..... +. +.+...+..+++|+..|........+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~~~~~g~~~~~~~~~~~~~ 325 (365)
T TIGR00900 251 WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIF-VIGLAILVVGLT-PP---NFPLFLVLWFAIGVGYGPINVPQGTL 325 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH-HHHHHHHHHHhh-ch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788899999888764432 233333322210 111111211111 11 23455677788899888887777777
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+.+++++|..+..+.......|..+|..++
T Consensus 326 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 326 LQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888998888888888888888777654
No 16
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.91 E-value=0.0017 Score=65.72 Aligned_cols=82 Identities=7% Similarity=-0.067 Sum_probs=43.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhh
Q 016425 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (390)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q 153 (390)
.+...+.+...+.....-++.+|+..+.=+..+..+..++.+..+.. + .++..++.-++.|++.|...
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-------~~~~l~~~~~l~g~~~g~~~ 129 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----S-------SLWAFALLWVLNAFFQGWGW 129 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----h-------HHHHHHHHHHHHHHHHHccc
Confidence 44445666666667777777788776543445555544444433321 1 12222333345666666655
Q ss_pred chhhhhcC-CCCHHH
Q 016425 154 GGLIGAAG-ELPDRY 167 (390)
Q Consensus 154 ~s~~~la~-~fp~~~ 167 (390)
.....+.+ .+|++.
T Consensus 130 ~~~~~~~~~~~~~~~ 144 (434)
T PRK11663 130 PVCAKLLTAWYSRTE 144 (434)
T ss_pred hHHHHHHHHhCCHHH
Confidence 55555544 567654
No 17
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.90 E-value=0.0031 Score=62.73 Aligned_cols=102 Identities=16% Similarity=-0.015 Sum_probs=56.7
Q ss_pred HHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecC
Q 016425 277 IAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP 355 (390)
Q Consensus 277 ~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p 355 (390)
...+.++-.+||....+... .++|+...... .+....++.... .++.+..++..+++|+..|-.........-
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 328 (399)
T PRK05122 255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSL--LVEILGLLLLWL----APSPWMALIGAALTGFGFSLVFPALGVEAV 328 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45678888889887665432 23444332222 122211111111 123344556667788887755444333444
Q ss_pred CcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 016425 356 KVVQLQHAETAGIVIVLFLVLGLAAGSIV 384 (390)
Q Consensus 356 ~~v~~~eke~ag~~~~~~l~~Gl~~Gs~l 384 (390)
+..++++|..+..++......|..+|..+
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 357 (399)
T PRK05122 329 KRVPPQNRGAALGAYSVFLDLSLGITGPL 357 (399)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888878777777776665443
No 18
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.0029 Score=63.35 Aligned_cols=274 Identities=16% Similarity=0.130 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhh
Q 016425 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI 157 (390)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~ 157 (390)
.|-+...+.......+..|++.|.-....+.+++++-++..+. ..|.+.++.=++.|++.|.+-+...
T Consensus 56 ~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA------------p~f~~Ll~aR~~~g~a~G~f~~i~~ 123 (394)
T COG2814 56 AYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA------------PSFAVLLLARALAGLAHGVFWSIAA 123 (394)
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666677777888887666666666666665543331 2467778888889999999988888
Q ss_pred hhcCC-CCHHHH----HHHHhhhHHH----------H--------H-HHHHHHHHHHHHHH-hccchhHHhhhhhhhhhh
Q 016425 158 GAAGE-LPDRYM----QALVAGTAGS----------V--------G-IVVMVICIVFYNVA-HRLPVIKYHEDLKIQAVN 212 (390)
Q Consensus 158 ~la~~-fp~~~~----~a~~~G~~~s----------i--------a-~~~~~~~~~~y~~l-~~~~~~~~~~~~~~~~~~ 212 (390)
++++. -||+.. .-+++|..++ + + ..+..++++....+ ...| +.+
T Consensus 124 ~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP------~~~----- 192 (394)
T COG2814 124 ALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP------PSE----- 192 (394)
T ss_pred HHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC------Ccc-----
Confidence 88885 566443 3446776666 1 1 11112222222222 2334 000
Q ss_pred hhhhhccCCCCcccchhHHHHHH--HHHHHhHHHHHHhhhhceeccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhh
Q 016425 213 EEKEEKGSLTGSMWRSAVWHIVG--RVKWYGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSL 290 (390)
Q Consensus 213 e~~e~~~~~~~~~~~~~~~~v~k--~i~~~~~~~~l~f~vTl~vFPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~ 290 (390)
.+++.++ ...+..+++| ++|...+..++.+.=.+..|.=+.+.-.+....+.-......+.|-+|-++|-.+
T Consensus 193 ~~~~~~~------~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~ 266 (394)
T COG2814 193 ISGSLPG------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLL 266 (394)
T ss_pred CCCCCCc------chhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHH
Confidence 0000001 1123344444 4555555555544444444422211100111111222345578999999999988
Q ss_pred hhhhhccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHH
Q 016425 291 TAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVI 370 (390)
Q Consensus 291 ~~~~~~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~ 370 (390)
.++..-+++++..+...+ +..+.++.+... -++.+...+.++++|++++-.....-+.-.+ ..||.+|.++.++
T Consensus 267 gGrl~dr~~~~~l~~~~~-l~a~~~l~l~~~----~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~ 340 (394)
T COG2814 267 GGRLADRGPRRALIAALL-LLALALLALTFT----GASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLN 340 (394)
T ss_pred HhhhccccchhHHHHHHH-HHHHHHHHHHHh----cchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHH
Confidence 876554444443332211 111112212111 1223455666777888875443333332222 5568999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 016425 371 VLFLVLGLAAGSIVAW 386 (390)
Q Consensus 371 ~~~l~~Gl~~Gs~ls~ 386 (390)
.-+.++|+.+|+.++=
T Consensus 341 ~aa~nlgia~GA~lGG 356 (394)
T COG2814 341 VAAFNLGIALGAALGG 356 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 19
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.84 E-value=0.0052 Score=61.63 Aligned_cols=103 Identities=14% Similarity=-0.004 Sum_probs=61.1
Q ss_pred HHHHHHhhhhhhhhhhhhhhcc-Cchh-HHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 276 LIAGYNVFDLVGKSLTAIYLLE-NEKV-AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~~~-~~~~-l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
....+.+|..+|+....+...+ ++++ +....+.-.+.+ +++ .. .++.+...+.++++|+..|........+
T Consensus 264 ~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~--~~~-~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 336 (417)
T PRK10489 264 LYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAV--GLF-GL----MPMWILAVLCLALFGYLSAISSLLQYTL 336 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHH--HHH-Hc----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999887654432 2232 222222111111 111 11 1232344567778888887766655555
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+..++++|..+-.+.......|..+|..+.
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 337 LQTQTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 56667777888888887777778888877664
No 20
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.83 E-value=0.0061 Score=61.01 Aligned_cols=104 Identities=21% Similarity=0.312 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccCchhHHHH-HHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLLENEKVAIGG-CFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~~~~~~l~~l-sl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.....+.++..+|+.+..+...+.+|+.+.. .+.-.+. -+++.... ++.+...+..+++|+..|.........
T Consensus 256 ~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~-~~~l~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~ 329 (394)
T PRK10213 256 LVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVS-ALVLTLWG-----SDKIVATGVAIIWGLTFALVPVGWSTW 329 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH-HHHHHHHh-----hhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3466788999999988766544433332222 1111111 01111111 233445566778888887777655544
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.-+..+ ++++.++........+|..+|+.++
T Consensus 330 ~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~ 360 (394)
T PRK10213 330 ITRSLA-DQAEKAGSIQVAVIQLANTCGAAIG 360 (394)
T ss_pred HHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454 4566666666666678888877654
No 21
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.82 E-value=0.0092 Score=64.84 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=62.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
...++.+++.++|..++.+.. ..++|++++...+=.. +-.+++. +.++.+..+++.+++|+..+-..+....+
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsa-i~~ll~~-----~~~s~~~ll~~~~l~g~~~~~~~~~~~a~ 672 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSC-ISCFFLS-----FGNSESAMIALLCLFGGLSIAAWNALDVL 672 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHH-----HHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999987754 3456654433321111 1111111 11223334444556666544444445567
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.++..+.++|..+..+....-.+|..+|..++
T Consensus 673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~ 704 (742)
T TIGR01299 673 TVELYPSDKRATAFGFLNALCKAAAVLGILIF 704 (742)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999888888888888888887665
No 22
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.80 E-value=0.011 Score=58.07 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=59.5
Q ss_pred hhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheec
Q 016425 48 FLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIK 126 (390)
Q Consensus 48 ~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~ 126 (390)
.-+-+..+-...+.+++.+.-++-+ ......+.+...+.....-.+.+|...|.-+..+.++..+..+.... .+
T Consensus 24 ~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-----~~ 98 (405)
T TIGR00891 24 DAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF-----AP 98 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----hc
Confidence 3344555555556666655433222 23334556666666666667777776555445555444444433222 11
Q ss_pred ccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425 127 GRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY 167 (390)
Q Consensus 127 ~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~ 167 (390)
.+...++.-++.|++.+.......++.. .+|++.
T Consensus 99 -------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 133 (405)
T TIGR00891 99 -------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL 133 (405)
T ss_pred -------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence 2344455667788888777776666654 466554
No 23
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.78 E-value=0.0054 Score=60.12 Aligned_cols=106 Identities=8% Similarity=0.015 Sum_probs=58.8
Q ss_pred hHHHHhhcchhhhhcccCCCcc-chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425 50 LPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (390)
Q Consensus 50 ~pwn~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~ 128 (390)
+..+.+....+++++.+..++- .......+.+...+...+.-.+.+|...|.-+..+.++..+..+.... .+
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-----~~-- 91 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL-----SN-- 91 (385)
T ss_pred HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH-----Hc--
Confidence 4455666666777666543322 233334555666666666666777776544344455454444443322 11
Q ss_pred CCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHH
Q 016425 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRY 167 (390)
Q Consensus 129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~ 167 (390)
.++..++..++.|++.+.......++... +|++.
T Consensus 92 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 126 (385)
T TIGR00710 92 -----NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE 126 (385)
T ss_pred -----cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH
Confidence 12334455667788888877777777664 66543
No 24
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.0017 Score=64.62 Aligned_cols=126 Identities=13% Similarity=0.063 Sum_probs=86.9
Q ss_pred CCCCCCccchhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccchh-hhhhHHHHHHHHHHHHHHhcCCCCcceEehh
Q 016425 27 QKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRI-FAVAYMLVGLFCLVIIVFYAHKSDAWVRINV 105 (390)
Q Consensus 27 ~~~p~d~~~~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~ 105 (390)
++.+|-.+...+..|++.|+..-+- -.-.+-+++.|.-+..+.. +-.++....++..+-.-++.+|+++|.-+..
T Consensus 8 ~~~~~~~~v~~t~lFfl~G~~~~l~----diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~l 83 (422)
T COG0738 8 SKSVKLAFVLLTSLFFLWGFITCLN----DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVL 83 (422)
T ss_pred cCCceeHHHHHHHHHHHHHHHhhcc----hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHH
Confidence 4456666788999999999755431 1112556666655555533 3356666777777777788899999999999
Q ss_pred hHHHHHHHHH-HHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHH
Q 016425 106 GLGLFVVALL-VVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDR 166 (390)
Q Consensus 106 ~l~~~~v~~~-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~ 166 (390)
|+.++++... +.|.. .. ..|..-++...++|.+-+++|.+.=.+.+...++
T Consensus 84 gL~l~avg~~lF~pAa---~~-------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~ 135 (422)
T COG0738 84 GLLLYAVGAALFWPAA---SS-------KSYGFFLVALFILASGIGLLETAANPYVTLLGKP 135 (422)
T ss_pred HHHHHHHHHHHHhhhh---hh-------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence 9999988654 33432 11 1344456677889999999999998888876543
No 25
>PRK12382 putative transporter; Provisional
Probab=97.65 E-value=0.012 Score=58.34 Aligned_cols=102 Identities=16% Similarity=-0.014 Sum_probs=58.0
Q ss_pred HHHHHhhhhhhhhhhhhhhc-cCchh-HHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 277 IAGYNVFDLVGKSLTAIYLL-ENEKV-AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 277 ~~~FnvgD~iGR~~~~~~~~-~~~~~-l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
...+.++..+|+....+... .++|+ ......+..+...++. .. ++.+...+..+++|+..|..........
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 327 (392)
T PRK12382 255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW--LA-----PTAWVALAGAALTGAGCSLIFPALGVEV 327 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH--Hc-----ccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45678888888877654332 23333 3332232222221111 11 2234445566777888776555444444
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.+..++++|..+-.+.......|..+|+.++
T Consensus 328 ~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~ 358 (392)
T PRK12382 328 VKRVPSQVRGTALGGYAAFQDIAYGVSGPLA 358 (392)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778888877777777777877777554
No 26
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.53 E-value=0.0054 Score=62.15 Aligned_cols=107 Identities=14% Similarity=0.040 Sum_probs=50.6
Q ss_pred HHHHhhcchhhhhcccCCCccc--hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425 51 PWNAFITAVDYFSYLYPEASVD--RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (390)
Q Consensus 51 pwn~~ita~dyf~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~ 128 (390)
....+....+|.++ + +.+.+ ......+.+...+.....-.+.+|+..|.-+..+.++..++.+.......
T Consensus 42 ~~~~~~~~~p~~~~-~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------ 113 (438)
T TIGR00712 42 VRKNFALAMPYLVE-Q-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW------ 113 (438)
T ss_pred HhccHHhhhHHHHH-c-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc------
Confidence 33444445566665 2 32221 23333555556666666666778887655444555555555443322110
Q ss_pred CCcchhhHHHHHHHHHhhhhhhhhhchhhh-hcCCCCHHH
Q 016425 129 VGLYDGFTVTVGAVALSGLADALVQGGLIG-AAGELPDRY 167 (390)
Q Consensus 129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~-la~~fp~~~ 167 (390)
.. ..+....+..++.|++.+...+.... +...+|++.
T Consensus 114 ~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~ 151 (438)
T TIGR00712 114 AT--SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE 151 (438)
T ss_pred cc--chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc
Confidence 00 12222334444566666655443332 233576543
No 27
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.48 E-value=0.023 Score=54.30 Aligned_cols=298 Identities=16% Similarity=0.115 Sum_probs=147.7
Q ss_pred hhhHHHHhhcchhhhhcccCCCc-cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheec
Q 016425 48 FLLPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIK 126 (390)
Q Consensus 48 ~L~pwn~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~ 126 (390)
.-+.++......+.+.+++..++ ........+.+...+.....-.+.+|.+.|.-+..+.++..+..+..... +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~ 85 (352)
T cd06174 11 SGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-----S 85 (352)
T ss_pred HHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-----c
Confidence 33445555555555555443222 22333445566666666666677788776665556666666555543321 1
Q ss_pred ccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHhccchhH
Q 016425 127 GRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYMQAL----VAGTAGSVGIVVMVICIVFYNVAHRLPVIK 201 (390)
Q Consensus 127 ~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~~~a~----~~G~~~sia~~~~~~~~~~y~~l~~~~~~~ 201 (390)
.++...+..++.|++.+..+....++... +|++.-... ..+.+++ ..+...+.-.+..+..+..
T Consensus 86 -------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~ 154 (352)
T cd06174 86 -------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLG----ALLGPLLGGLLAESLGWRW 154 (352)
T ss_pred -------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHH----HHHHHHHHHHHHHHhhHHH
Confidence 23444566677888888888888777764 554332111 1111111 1111111111111111000
Q ss_pred -HhhhhhhhhhhhhhhhccCCCCcccchhHHHHHHHHHHHhHHHHHHhhhh---ceeccceEeeeeccCCCchhHHHHHH
Q 016425 202 -YHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIVGRVKWYGFGILLIYIVT---LSIFPGYITEDVHSEILKDWYGIILI 277 (390)
Q Consensus 202 -~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~~v~k~i~~~~~~~~l~f~vT---l~vFPgi~~~~~~~~~~~~w~~~~~~ 277 (390)
++...--.-. ...-.....|+.+...+..++..... ....|-+..+ . .+.++...-...
T Consensus 155 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 217 (352)
T cd06174 155 LFLILAILGLL--------------LALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQE-V--LGLSAAEAGLLL 217 (352)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-h--cCCCHHHHHHHH
Confidence 0000000000 00000000044444444433333322 2222332111 1 011233334557
Q ss_pred HHHHhhhhhhhhhhhhhhc-cCchh-HHHHHHHHHHHH-hhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 278 AGYNVFDLVGKSLTAIYLL-ENEKV-AIGGCFARLLFF-PLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 278 ~~FnvgD~iGR~~~~~~~~-~~~~~-l~~lsl~R~ifi-plf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
..+.++..+|+....+... .++|+ ...... .+.. ..+.... .++.+..++..+++|+..|...+....+.
T Consensus 218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 290 (352)
T cd06174 218 SLFGLGGILGALLGGLLSDRLGRRRLLLLIGL--LLAALGLLLLAL-----APSLALLLVALLLLGFGLGFAFPALLTLA 290 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 7888999999988765332 22333 222221 1111 1111111 12235566778888999998888888888
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.+..++++|..+-.+.......|..+|+.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 321 (352)
T cd06174 291 SELAPPEARGTASGLFNTFGSLGGALGPLLA 321 (352)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889998888888888888888887765
No 28
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.46 E-value=0.037 Score=54.87 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+..+....++|+..|-.....+.+..+..+ +++..++.+.+....+|-.+|+.++
T Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 300 WTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677788877766666665555443 4667777777767778888887654
No 29
>PRK03545 putative arabinose transporter; Provisional
Probab=97.43 E-value=0.047 Score=54.16 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=52.9
Q ss_pred hhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHH
Q 016425 59 VDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTV 137 (390)
Q Consensus 59 ~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~ 137 (390)
.+..++++.-++.+ ......+.+...+.....-.+.+|++.|.-+..+..+..+..+.... .+ .++.
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~-------~~~~ 99 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL-----AW-------NFTV 99 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-----hc-------cHHH
Confidence 45556555433322 22333444455555555567788888776666666665555443322 11 2344
Q ss_pred HHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425 138 TVGAVALSGLADALVQGGLIGAAG-ELPDR 166 (390)
Q Consensus 138 ~l~~~~~~g~~~~~~q~s~~~la~-~fp~~ 166 (390)
.++.-++.|++.+.......++.+ .+|++
T Consensus 100 l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~ 129 (390)
T PRK03545 100 LLISRIGIAFAHAIFWSITASLAIRVAPAG 129 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Confidence 445556778777777766666655 45653
No 30
>PRK10133 L-fucose transporter; Provisional
Probab=97.42 E-value=0.029 Score=57.18 Aligned_cols=119 Identities=10% Similarity=0.020 Sum_probs=69.8
Q ss_pred hhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHH
Q 016425 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL 115 (390)
Q Consensus 37 ~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~ 115 (390)
..+.|++.|+.... .-.-.+.+++.+.-++-+ ......+.+...+.+...-.+.+|+..|.=+..++.+..+..+
T Consensus 31 ~~~~~~~~~~~~~~----~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 31 LCSLFFLWAVANNL----NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34556666665432 222234456666543332 2333456666666666777777887776666677777766654
Q ss_pred HHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHH
Q 016425 116 VVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYM 168 (390)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~ 168 (390)
...... .. ..+...++.-++.|++.|..+.....+....+++..
T Consensus 107 l~~~~~--~a-------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~ 150 (438)
T PRK10133 107 LFWPAA--EI-------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS 150 (438)
T ss_pred HHHHHH--hc-------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh
Confidence 321111 11 124556677788999999999888887666654433
No 31
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.41 E-value=0.04 Score=54.58 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=50.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
....++.++..+++....+..- .++|+...... .+....++.... .++.+...+..++.|+..|-........
T Consensus 262 ~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (408)
T PRK09874 262 MIASVPGVAALLSAPRLGKLGDRIGPEKILITAL--IFSVLLLIPMSF----VQTPLQLGILRFLLGAADGALLPAVQTL 335 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 3445667788888776544322 23344332222 111111111111 1233445566677888887665544443
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+..+++++...-.+.......|..+|..++
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~ 367 (408)
T PRK09874 336 LVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMG 367 (408)
T ss_pred HHHhCCcccceeeehHHHHHHHHHHHhhHHHH
Confidence 33444455555544444444555666655554
No 32
>TIGR00898 2A0119 cation transport protein.
Probab=97.41 E-value=0.034 Score=57.22 Aligned_cols=103 Identities=10% Similarity=-0.006 Sum_probs=54.6
Q ss_pred HHHHHhhhhhhhhhhhhhhc-cCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 277 IAGYNVFDLVGKSLTAIYLL-ENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 277 ~~~FnvgD~iGR~~~~~~~~-~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
..++.+....|+.+..+..- ..+|+..... ++-.+..-++.... . .+.+..+.+.++.++..+-.......+.
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-V----DLYFLRTALAVLGKFGITSAFQMVYLYT 435 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-C----CchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888888887655432 3444433222 22222211111111 1 1113334444445555544455566777
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIV 384 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~l 384 (390)
++..+++.|..+-.+......+|-.+|..+
T Consensus 436 ~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i 465 (505)
T TIGR00898 436 AELYPTVVRNLGVGVCSTMARVGSIISPFL 465 (505)
T ss_pred cccccHHHHhhhHhHHHHHHHHHHHHHhHH
Confidence 888888888887666666666666666544
No 33
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.38 E-value=0.043 Score=55.79 Aligned_cols=108 Identities=10% Similarity=0.090 Sum_probs=62.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhc-ccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGC-LHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~-~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 352 (390)
.......++..+|+.+..+..- .++|+....... +..+-.+++. ...|. .+.+.....+++.|+..|......+.
T Consensus 295 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~g~~~~~~~~~~ 371 (485)
T TIGR00711 295 LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLI-LYAVGFYWRAFTFTPD--TPFLAIALPQFIRGFGMGCFFMPLTT 371 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH-HHHHHHHHHhccCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888765432 234443322221 1111111111 11111 12233445577788888877665555
Q ss_pred ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.+.+.++++++..+..+..+.-..|-.+|..+.
T Consensus 372 ~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 404 (485)
T TIGR00711 372 IALSGLPPHKIARGSSLSNFTRQLGGSIGTALI 404 (485)
T ss_pred HHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888888888887654
No 34
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.31 E-value=0.045 Score=57.26 Aligned_cols=318 Identities=14% Similarity=0.052 Sum_probs=159.2
Q ss_pred hhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHH
Q 016425 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL 115 (390)
Q Consensus 37 ~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~ 115 (390)
.|-.+++--..+.+.......+...+.....++... .....+..+|.++..+..-.+..|.+.|.-+..+-.+.++..+
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~ 90 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL 90 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555544443322 2334566777777777777788888876666677766665555
Q ss_pred HHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHHH-HHHHh-----------hhHHH----
Q 016425 116 VVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRYM-QALVA-----------GTAGS---- 178 (390)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~~-~a~~~-----------G~~~s---- 178 (390)
++++... .+ . ...+..++..++.|+++++.+.+..++.. +.|++.. +|... |-+++
T Consensus 91 ~L~~l~~--~~----~-~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 91 LLAVLAF--FG----L-LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred HHHHHHH--hC----c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 5554322 21 1 23355667788899999999999888876 5776544 33321 11111
Q ss_pred --HHH-HHHHHHHHHHHHH----hccchhHHhhhhhhhhhhhhhhhccCCCCcccchhHH---HHHHHHHH--HhHHHHH
Q 016425 179 --VGI-VVMVICIVFYNVA----HRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVW---HIVGRVKW--YGFGILL 246 (390)
Q Consensus 179 --ia~-~~~~~~~~~y~~l----~~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~---~v~k~i~~--~~~~~~l 246 (390)
.+. ...++..++|... .+.+. +.+ + ++.+++. ...+++ +..++... ..+....
T Consensus 164 a~~G~~~~f~inalsfl~~i~~l~~~~~-----~~~-~---~~~~~e~------~~~~l~~G~ryv~~~~~l~~~l~~~~ 228 (524)
T PF05977_consen 164 AFFGAAAAFLINALSFLISILALLRWKP-----PPP-P---SSLPRER------FFSALREGLRYVRSSPPLRSVLLRSF 228 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc-----ccc-c---cccchhh------hhhhHHHHHHHHhcchHHHHHHHHHH
Confidence 111 1122233333321 11110 000 0 0000000 011111 11111111 0111111
Q ss_pred Hhhh----hceeccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhccc
Q 016425 247 IYIV----TLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLH 321 (390)
Q Consensus 247 ~f~v----Tl~vFPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~ 321 (390)
.|.. ...+.|-+..+.. +.....+- ++...+.+|=.+|-.+...... .+++++...+. +.+-...+.. .
T Consensus 229 ~~~l~~~a~~aLlPl~a~~~l--~~~a~~yG-ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~--~~~a~~~~~l-a 302 (524)
T PF05977_consen 229 LFNLFASAVWALLPLFARDVL--GGGASGYG-LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS--LLFALALLLL-A 302 (524)
T ss_pred HHHHhhhHHHHhhhHHHHHHh--CCcHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH--HHHHHHHHHH-h
Confidence 1111 1223454421111 11122333 4567899999999988765433 23333332222 1111111111 1
Q ss_pred CCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 322 GPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 322 ~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+.++.|..++.+++.|.+.....+......-+.++++.|..+-.+.......|..+|+++.
T Consensus 303 ---l~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~ 363 (524)
T PF05977_consen 303 ---LSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW 363 (524)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2344466677778889888777766666666677888888888887777777788877653
No 35
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.27 E-value=0.018 Score=65.44 Aligned_cols=105 Identities=16% Similarity=0.011 Sum_probs=58.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcc-CchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLLE-NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~~-~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.+...+.+|-.+|..+..+...+ .++..+....+ ...+-++++.. ..+.+..++..+++|+..|........+
T Consensus 273 ~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 346 (1146)
T PRK08633 273 YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGAL-GLALSLFLLPT-----APSLASVLVLFFLFGFSAGLFIVPLNAL 346 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHH-HHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44667778888888877655432 22222221110 11111111111 1244555677788888888776665566
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+..++++|..+..+.++...+|..+|..++
T Consensus 347 ~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~ 378 (1146)
T PRK08633 347 IQFRAPEKELGKVLAANNFLQNVGMLLFLALT 378 (1146)
T ss_pred HhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 56666777777776666666666665554443
No 36
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.27 E-value=0.086 Score=54.22 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=15.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhh
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL 295 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~ 295 (390)
....+++++..+||....+..
T Consensus 292 ~~~~~~~~~~~ig~~~~G~ls 312 (476)
T PLN00028 292 AIAASFGLMNLFARPAGGYLS 312 (476)
T ss_pred HHHHHHHHHHHHHHhhhHHHH
Confidence 456678899999998776544
No 37
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.19 E-value=0.093 Score=52.47 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=53.4
Q ss_pred hhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHH
Q 016425 59 VDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTV 137 (390)
Q Consensus 59 ~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~ 137 (390)
..++++.+.-++.+ ......+.+...+.....-.+.+|+..|.-+..+.++..++.+..... + .++.
T Consensus 41 ~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~-------~~~~ 108 (426)
T PRK12307 41 MYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-----S-------GVIM 108 (426)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----h-------HHHH
Confidence 34555544333222 233345566666666666777777776555556666666655543332 1 2333
Q ss_pred HHHHHHHhhhhhhhhhchhhhhc-CCCCHHH
Q 016425 138 TVGAVALSGLADALVQGGLIGAA-GELPDRY 167 (390)
Q Consensus 138 ~l~~~~~~g~~~~~~q~s~~~la-~~fp~~~ 167 (390)
.++.-++.|++.+.......++. ..+|++.
T Consensus 109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~ 139 (426)
T PRK12307 109 LTLSRFIVGMGMAGEYACASTYAVESWPKHL 139 (426)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence 44556677877776665555544 4567654
No 38
>PRK03699 putative transporter; Provisional
Probab=97.14 E-value=0.1 Score=51.99 Aligned_cols=101 Identities=11% Similarity=0.128 Sum_probs=51.8
Q ss_pred HHHHHHhhhhhhhhhhhhhhc-cCchhH-HHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 276 LIAGYNVFDLVGKSLTAIYLL-ENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l-~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
...++.++..+||.+..+..- .++|+. ........+.+.++.. . ++.+...+..+++|+..|-..+.....
T Consensus 246 ~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~G~~~~~~~~~~~~~ 318 (394)
T PRK03699 246 LVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN--T-----DDPSHLLYAILGLGFFSSAIYTTIITL 318 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH--c-----CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999988765442 233433 3333333332222221 1 122344556777888776555555555
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIV 384 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~l 384 (390)
+++..+++..+..|.+. .+-.+|..+|..+
T Consensus 319 ~~~~~~~~~~~~~g~~~-~~~~~g~~i~p~~ 348 (394)
T PRK03699 319 GSQQTKVASPKLVNFIL-TCGTIGTMLTFVV 348 (394)
T ss_pred HHHHccCCCHHHHHHHH-HhhhHHHHHHHHH
Confidence 56554433333334333 3344566555543
No 39
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.12 E-value=0.059 Score=53.74 Aligned_cols=119 Identities=9% Similarity=0.073 Sum_probs=59.6
Q ss_pred hhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHH
Q 016425 36 LAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVAL 114 (390)
Q Consensus 36 ~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~ 114 (390)
+.-+.+.+....+.+....+....+.+.+++.-+.-+ ......+.+...+...+.-.+.+|+..|.-+..+..+..++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 92 (406)
T PRK15402 13 LFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTC 92 (406)
T ss_pred HHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 3444444444444445556666656566655433221 222335555566666666666777765544445555554444
Q ss_pred HHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425 115 LVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR 166 (390)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~ 166 (390)
+.... .+ .++..++.-.+.|++.+.......+... .+|++
T Consensus 93 ~~~~~-----~~-------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~ 133 (406)
T PRK15402 93 LAILL-----AQ-------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA 133 (406)
T ss_pred HHHHH-----Hc-------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh
Confidence 43222 11 1223334455667776666555554433 45653
No 40
>PRK10504 putative transporter; Provisional
Probab=97.06 E-value=0.094 Score=53.39 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=38.4
Q ss_pred HHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 334 LLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 334 il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+..++.|+..|-..+......++.++++++..+..+.++...+|..+|..++
T Consensus 358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 409 (471)
T PRK10504 358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA 409 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 4455667777766666666667778888888888888888888888876654
No 41
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.04 E-value=0.17 Score=53.54 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=64.4
Q ss_pred HHHhhhhhhhhhhhhhh--ccCchhH-HHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecC
Q 016425 279 GYNVFDLVGKSLTAIYL--LENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP 355 (390)
Q Consensus 279 ~FnvgD~iGR~~~~~~~--~~~~~~l-~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p 355 (390)
.++.|=..|-.+..... .++.|+. ++.++...+|+-+....+. + |....+.+.++-|+.-|+....++..+.
T Consensus 357 ~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~--~---n~~~~i~~~~l~g~giG~~~~~~~~~~q 431 (599)
T PF06609_consen 357 PVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP--D---NKNAAIAFLVLAGFGIGGILVPAIVIAQ 431 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC--C---CcchHHHHHHHHHHhHHHHHHHHHHeeE
Confidence 45666666655432222 2344553 3445555555555444332 2 1122356677888999999999998887
Q ss_pred CcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 356 KVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 356 ~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
-.+++++-..+..++...=.+|-.+|..+.
T Consensus 432 l~~p~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 432 LIVPDEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred eeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 778888888888888888888877777653
No 42
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.94 E-value=0.13 Score=51.77 Aligned_cols=120 Identities=11% Similarity=0.068 Sum_probs=75.0
Q ss_pred chhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHH
Q 016425 35 HLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVA 113 (390)
Q Consensus 35 ~~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~ 113 (390)
......|++.|... +..-...+.+++.+.-++.+ ......+.+...+.....-++.+|+..|.-+..++.+.++.
T Consensus 6 ~~~~~~f~~~G~~~----~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 6 ALITSLFALWGFAN----DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHH----HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 34667788888765 22223336667666443322 33444566666777777778889998888888888887776
Q ss_pred HHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425 114 LLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY 167 (390)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~ 167 (390)
.+....... . ..|+..++..++.|++.|..|.+.-.+.. ..|+++
T Consensus 82 ~~l~~~~~~--~-------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~ 127 (410)
T TIGR00885 82 AFLFWPAAE--I-------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST 127 (410)
T ss_pred HHHHHHHHh--h-------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH
Confidence 654322110 1 13455566677889999999987666554 345544
No 43
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=96.94 E-value=0.16 Score=51.54 Aligned_cols=93 Identities=8% Similarity=-0.069 Sum_probs=51.9
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhc
Q 016425 75 FAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQG 154 (390)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~ 154 (390)
..-.+.+...+.+++.-.+.+|+..|.=+..+.+++.++.+...................+...++.=++.|++.|....
T Consensus 60 ~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 139 (479)
T PRK10077 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASM 139 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhh
Confidence 33455666777777777777887766555666666655544332211000000011111223334555778888888888
Q ss_pred hhhhhcC-CCCHHH
Q 016425 155 GLIGAAG-ELPDRY 167 (390)
Q Consensus 155 s~~~la~-~fp~~~ 167 (390)
...++.+ .+|++.
T Consensus 140 ~~~~~i~e~~~~~~ 153 (479)
T PRK10077 140 LSPMYIAEIAPAHI 153 (479)
T ss_pred HHHHHHHhhCChhh
Confidence 8887766 567664
No 44
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.058 Score=56.21 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=59.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccC---chhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLLEN---EKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~~~---~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
.+..+-++.|.+||....+.--+. ++++..++++...+-.+++-. .++-+..+....++|++-|+..++.-
T Consensus 337 ~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~------~~~~~~l~~~~~~fG~~~g~~~~l~~ 410 (509)
T KOG2504|consen 337 FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF------ATTYVGLIVFSILFGFCVGSFSSLTP 410 (509)
T ss_pred HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346688999999999987765422 233444444443333322211 12225678888899999999998887
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHH
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAG 381 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~G 381 (390)
....+-+..++-.-|-.+..++-.++..+|
T Consensus 411 ~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~g 440 (509)
T KOG2504|consen 411 VILVDLVGLEKLSNAYGLLLLFQGIGALVG 440 (509)
T ss_pred HHHHHHcChhhcchHHHHHHHHhHHHHHcC
Confidence 555555555444444444444444444333
No 45
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=96.87 E-value=0.015 Score=59.41 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=54.7
Q ss_pred cchhhhhcccCCCcc-chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhh
Q 016425 57 TAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGF 135 (390)
Q Consensus 57 ta~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f 135 (390)
.+.+.+++.+.-++- .......+.+...+.+...-.+.+|+..|.-+..+.++..+..+.++.... ... ..+
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~~~------~~~ 122 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLG-SGS------VSL 122 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHh-ccc------chH
Confidence 334555665543222 123344566666666777777788888666566666665555444443211 111 123
Q ss_pred HHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425 136 TVTVGAVALSGLADALVQGGLIGAAG-ELPDR 166 (390)
Q Consensus 136 ~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~ 166 (390)
...++.-++.|++.|..-.....+.+ .+|++
T Consensus 123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 154 (467)
T PRK09556 123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRR 154 (467)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHcCcc
Confidence 33444555677776666555555554 46654
No 46
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=96.81 E-value=0.16 Score=50.27 Aligned_cols=101 Identities=6% Similarity=-0.229 Sum_probs=50.5
Q ss_pred HHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecC
Q 016425 277 IAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP 355 (390)
Q Consensus 277 ~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p 355 (390)
..+-.++..+++....+.. ..++|+....... +...-++... +.++.+..++..+++|++.|......+.+..
T Consensus 246 ~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 319 (382)
T PRK11128 246 WSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAI--CGVVRWGLMG----STTALPWLIVIQILHCGTFTVCHLAAMRYIA 319 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355567777766654432 2344443322221 1111111111 1234455677888899999988777776665
Q ss_pred CcCChhhHHH-HhHHHHHHHHHHHHHHHHH
Q 016425 356 KVVQLQHAET-AGIVIVLFLVLGLAAGSIV 384 (390)
Q Consensus 356 ~~v~~~eke~-ag~~~~~~l~~Gl~~Gs~l 384 (390)
+. +++++.. .|....+....|..+|..+
T Consensus 320 ~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i 348 (382)
T PRK11128 320 AR-PGSEVIRLQALYSALAMGGSIAIMTVL 348 (382)
T ss_pred HC-CHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 3333333 2333334444555555544
No 47
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=96.71 E-value=0.24 Score=49.78 Aligned_cols=99 Identities=14% Similarity=-0.023 Sum_probs=47.6
Q ss_pred cchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhh
Q 016425 57 TAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGF 135 (390)
Q Consensus 57 ta~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f 135 (390)
.+.+..++.+.-++.+ ....-.+.+...+.++..-.+.+|+..|.=+..+..+..+..+..+.. + .+
T Consensus 29 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~-------~~ 96 (412)
T TIGR02332 29 FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA-----T-------GP 96 (412)
T ss_pred HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----c-------CH
Confidence 3445666655322222 222233444444445555555666665444445555554444433221 1 11
Q ss_pred HHHHHHHHHhhhhhhhhhchhhhh-cCCCCHHH
Q 016425 136 TVTVGAVALSGLADALVQGGLIGA-AGELPDRY 167 (390)
Q Consensus 136 ~~~l~~~~~~g~~~~~~q~s~~~l-a~~fp~~~ 167 (390)
...++.-++.|++.+....+...+ +..+|++.
T Consensus 97 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (412)
T TIGR02332 97 ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF 129 (412)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH
Confidence 222344456677777666666554 44578653
No 48
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.66 E-value=0.092 Score=51.11 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=53.4
Q ss_pred HHHHHHhhhhhhhhhhhhhhc-cCchhHHH-HHHHHHHH-HhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425 276 LIAGYNVFDLVGKSLTAIYLL-ENEKVAIG-GCFARLLF-FPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~-lsl~R~if-iplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 352 (390)
....+.++..+++.+..+..- .++|+... ...+-.+. ++++.....+ .+.+..++..+++|+..|-..+....
T Consensus 260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~ 335 (394)
T TIGR00883 260 VLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDS----GSFTLFFFLVLGLALIGGMYTGPMGS 335 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHhhhHHH
Confidence 456678888888877654332 23344222 22222221 1222111111 12234455667778888777777777
Q ss_pred ecCCcCChhhHHHHhHH-HHHHHHHHHHHHH
Q 016425 353 LAPKVVQLQHAETAGIV-IVLFLVLGLAAGS 382 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~-~~~~l~~Gl~~Gs 382 (390)
..++..++++|..+-.+ ..+....|..+|.
T Consensus 336 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p 366 (394)
T TIGR00883 336 FLPELFPTEVRYTGASLAYNLAGAIFGGFAP 366 (394)
T ss_pred HHHHhCCccceeeEeeehhHhHHHHHhhHHH
Confidence 77777777777655433 3344444443443
No 49
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.61 E-value=0.71 Score=46.04 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=55.7
Q ss_pred HHHHHHhhhhhhhhhhhhhhc-cCchhHH--HHHHHHHHH-HhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 276 LIAGYNVFDLVGKSLTAIYLL-ENEKVAI--GGCFARLLF-FPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l~--~lsl~R~if-iplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
....+.++..+|+....+..- .++|+.. ...++-.+. +.+...-.. ..++.+..++..+++|+..|.......
T Consensus 262 ~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~G~~~~~~~~~~~ 338 (402)
T TIGR00897 262 IWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH---FGHSFAVALIIAIALGIFLAGYVPLAA 338 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc---cCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999998765443 2333322 111222221 111111000 112344555667777887765543322
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+ +..+++|..+-.+......+|..+|..++
T Consensus 339 -~~~-~~~~~~~g~~~g~~~~~~~lg~~~gp~i~ 370 (402)
T TIGR00897 339 -VFP-TLAPKHKGAAMSVLNLSAGLSAFLAPAIA 370 (402)
T ss_pred -HHH-hhCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 34556788887877877777777776554
No 50
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.60 E-value=0.51 Score=46.76 Aligned_cols=98 Identities=10% Similarity=-0.080 Sum_probs=58.2
Q ss_pred HHHHHhhhhhhhhhhhh-hhccCchhHHH----HHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 277 IAGYNVFDLVGKSLTAI-YLLENEKVAIG----GCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 277 ~~~FnvgD~iGR~~~~~-~~~~~~~~l~~----lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
..+..++..+++....+ .+..++|+++. ...+|.+..+ +.++.+..+..+++.|++-|-+....|
T Consensus 246 ~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 246 WGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG----------AIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred HHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH----------hHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777766543 23344455332 2233333221 234556677889999999999999999
Q ss_pred eecCCcCChhhHHHHhHH-HHHHHHHHHHHHHHHH
Q 016425 352 ILAPKVVQLQHAETAGIV-IVLFLVLGLAAGSIVA 385 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~-~~~~l~~Gl~~Gs~ls 385 (390)
.+..+. ++++|..+-.+ ...+...|..+|+.++
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~ 349 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA 349 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766 65555433222 3345566666666554
No 51
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=96.59 E-value=0.22 Score=48.43 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHhhcchh-hhhcccCCCc-cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425 51 PWNAFITAVD-YFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (390)
Q Consensus 51 pwn~~ita~d-yf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~ 128 (390)
-|..+....+ |+++.+.-++ ........+.+...+.....-.+.+|+..|..+..+..+..+..+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~------- 88 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV------- 88 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3444444455 4665553222 223444566667777777777777887766666667666666655433321
Q ss_pred CCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHH
Q 016425 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRY 167 (390)
Q Consensus 129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~ 167 (390)
. .++..++.-++.|++.+......--++..+|++.
T Consensus 89 ~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 123 (366)
T TIGR00886 89 Q----SYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKI 123 (366)
T ss_pred h----hHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhh
Confidence 0 2233344455566665554433323334566653
No 52
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.47 E-value=0.59 Score=46.15 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=53.5
Q ss_pred HHHHHHhhhhhhhhhhhhhhc-cCchhHHHH-HHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 276 LIAGYNVFDLVGKSLTAIYLL-ENEKVAIGG-CFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~l-sl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
...++.++..+||....+..- .++|+.... .+...+...++. + + ......++++|+..+-.....+..
T Consensus 240 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-----~----~-~~~~~~~~l~g~~~~~~~p~~~~~ 309 (381)
T PRK03633 240 WMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-----S----Q-AAMAPALFILGAAGFTLYPVAMAW 309 (381)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-----h----h-HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456788899999987655432 344443221 221221111111 1 1 122344556677665455556665
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+..+++++..+......+..+|-.+|..++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~ 341 (381)
T PRK03633 310 ACEKVEHHELVAMNQALLLSYTVGSLLGPSFT 341 (381)
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555555566677777776544
No 53
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.35 E-value=1 Score=43.74 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=32.2
Q ss_pred hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+...+..++.|+..|......+.+..+..+ +++..+..+.......|..+|..++
T Consensus 289 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~ 343 (375)
T TIGR00899 289 WALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVG 343 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666788877766655555444433 4454555555555567777766554
No 54
>PRK03893 putative sialic acid transporter; Provisional
Probab=96.32 E-value=0.45 Score=48.63 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=53.4
Q ss_pred HHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCc
Q 016425 53 NAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGL 131 (390)
Q Consensus 53 n~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~ 131 (390)
+......+++.+.+.-+.-+ ..+...+.+...+.....-.+.+|+..|.-+..+.++..+..+..... +
T Consensus 37 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~----- 106 (496)
T PRK03893 37 VLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA-----P----- 106 (496)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----h-----
Confidence 33333446666655322211 223334455555555666666777765554555555555544433221 1
Q ss_pred chhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425 132 YDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY 167 (390)
Q Consensus 132 ~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~ 167 (390)
.++..++..++.|++.+..++...++.. .+|++.
T Consensus 107 --~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 141 (496)
T PRK03893 107 --GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL 141 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 2334455566778777766666555444 567654
No 55
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.27 E-value=0.21 Score=57.01 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=44.6
Q ss_pred ccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 327 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 327 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
.+.|..++..+++|+..|..........-+..+++++..+..+.++...+|..+|+.+.-
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g 391 (1140)
T PRK06814 332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILA 391 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHH
Confidence 455666677788898888777666666666777888888888877888888777776643
No 56
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.21 E-value=0.6 Score=48.07 Aligned_cols=76 Identities=8% Similarity=0.007 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcc--hhhHHHHHHHHHhhhhhhhhhchhhhhcC-
Q 016425 85 FCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLY--DGFTVTVGAVALSGLADALVQGGLIGAAG- 161 (390)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~--~~f~~~l~~~~~~g~~~~~~q~s~~~la~- 161 (390)
+..++.-.+..|+..|.-+..+..++.++.+..... + +.++. ....+.++.=++.|++.|....+...+.+
T Consensus 72 ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~-----~-~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e 145 (490)
T PRK10642 72 LGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI-----P-SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAE 145 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc-----c-cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHH
Confidence 344445556777776666666777666665543331 1 00000 00112344455677777776666666655
Q ss_pred CCCHH
Q 016425 162 ELPDR 166 (390)
Q Consensus 162 ~fp~~ 166 (390)
.+|++
T Consensus 146 ~~p~~ 150 (490)
T PRK10642 146 YSPDR 150 (490)
T ss_pred hCCCC
Confidence 46643
No 57
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=96.21 E-value=0.68 Score=45.26 Aligned_cols=78 Identities=18% Similarity=0.064 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchh
Q 016425 77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL 156 (390)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~ 156 (390)
..+.+...+.....-.+.+|...|.-+..+.++..++.+..... + .++..++..++.|++.+......
T Consensus 33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~-------~~~~~~~~~~l~g~~~~~~~~~~ 100 (377)
T PRK11102 33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----Q-------TIDQLIYMRFLHGLAAAAASVVI 100 (377)
T ss_pred HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----c-------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666777765444445555555544433221 1 12333445566777777666555
Q ss_pred hhhcC-CCCHH
Q 016425 157 IGAAG-ELPDR 166 (390)
Q Consensus 157 ~~la~-~fp~~ 166 (390)
.++.. .+|++
T Consensus 101 ~~~~~~~~~~~ 111 (377)
T PRK11102 101 NALMRDMFPKE 111 (377)
T ss_pred HHHHHHhcCHH
Confidence 55544 45654
No 58
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=96.21 E-value=0.63 Score=48.02 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=44.2
Q ss_pred hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+.....+++.|+..|.........+-+.++++++..++.+..+.-.+|..+|..++
T Consensus 352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF 407 (495)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 44456778889998887766666666678889999999999999999988887654
No 59
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.15 Score=51.44 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=71.4
Q ss_pred HHHHHHhHHHHHHhhhhceec---cceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhhc--c-CchhHHHHHHH
Q 016425 235 GRVKWYGFGILLIYIVTLSIF---PGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL--E-NEKVAIGGCFA 308 (390)
Q Consensus 235 k~i~~~~~~~~l~f~vTl~vF---Pgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~--~-~~~~l~~lsl~ 308 (390)
|.+|..+++-+++|++=+.+- |-...+..+. +.-..-..+.+|=++-+.|-.++.|..- . .+|....+...
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~---s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~ 328 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGF---SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM 328 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence 368888999899998776432 2222221111 1111234478999999999999998763 3 34433222111
Q ss_pred HHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCc------CChhhHHHHhHHHHHHHHHHHHHHH
Q 016425 309 RLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKV------VQLQHAETAGIVIVLFLVLGLAAGS 382 (390)
Q Consensus 309 R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~------v~~~eke~ag~~~~~~l~~Gl~~Gs 382 (390)
=.+++-+...- ..|. .|.+...+..++.|+. +|+|+- .+-..|+.||+..+|.=..|=.+|+
T Consensus 329 ~~i~~~~~~~w-~~~~--~~~~l~~~~l~~iGf~---------IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga 396 (448)
T COG2271 329 LLITASLVLYW-LAPN--GSYLLDAILLFIIGFL---------IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA 396 (448)
T ss_pred HHHHHHHHHHH-cCCC--ccHHHHHHHHHHHHHH---------HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhH
Confidence 11221111110 1121 1324445555555643 455553 2334577777777776666666666
Q ss_pred HHH
Q 016425 383 IVA 385 (390)
Q Consensus 383 ~ls 385 (390)
.++
T Consensus 397 ~~a 399 (448)
T COG2271 397 ALA 399 (448)
T ss_pred Hhc
Confidence 554
No 60
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.08 E-value=0.8 Score=45.52 Aligned_cols=53 Identities=17% Similarity=0.096 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 332 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 332 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+..++.++..|........+..+ ..|++|+.+..+.......|..+|+.++
T Consensus 308 ~l~~~~l~~~~~g~~~~~~~~~~~~-~~p~~~g~~~~~~~~~~~lg~~~g~~l~ 360 (393)
T PRK15011 308 LLGLQLLNAIYIGILGGIGMLYFQD-LMPGQAGSATTLYTNTSRVGWIIAGSLA 360 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555544443332222 2334566666666666777888777665
No 61
>PRK11043 putative transporter; Provisional
Probab=96.06 E-value=1.7 Score=42.97 Aligned_cols=110 Identities=7% Similarity=-0.035 Sum_probs=53.9
Q ss_pred hhhhhhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhh
Q 016425 45 GLGFLLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAV 123 (390)
Q Consensus 45 Gi~~L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~ 123 (390)
+....+.++.+....+.+++.+.-++-+ ......+.+...+.....-.+.+|...|.-+..+..+..+..+....
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---- 90 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW---- 90 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH----
Confidence 3344556777776666566655332222 22233445555566666666677776655444555444443333221
Q ss_pred eecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425 124 YIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR 166 (390)
Q Consensus 124 ~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~ 166 (390)
.+ .++..++.-++.|++.+......-++.. .+|++
T Consensus 91 -~~-------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 126 (401)
T PRK11043 91 -VE-------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ 126 (401)
T ss_pred -hc-------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH
Confidence 11 1233334445556655544443333333 56655
No 62
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=96.05 E-value=0.78 Score=46.63 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhch
Q 016425 76 AVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGG 155 (390)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s 155 (390)
...+.+...+.++..-.+.+|+..|.-+..+.++..+..+..+... . ..+...++.-++.|++.+.....
T Consensus 82 ~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~-------~~~~~l~~~r~~~G~~~~~~~~~ 151 (465)
T TIGR00894 82 LSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---G-------GGIALVVFCRVIQGLAQGSVSPA 151 (465)
T ss_pred HHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---H-------cCchHHHHHHHHHHHhcccchhh
Confidence 3455566666666666677777655545555554444443333210 0 01233444555677777776666
Q ss_pred hhhhcC-CCCHHH
Q 016425 156 LIGAAG-ELPDRY 167 (390)
Q Consensus 156 ~~~la~-~fp~~~ 167 (390)
...+.+ .+|++.
T Consensus 152 ~~~~~~~~~~~~~ 164 (465)
T TIGR00894 152 THKIIVKWAPPKE 164 (465)
T ss_pred HHHHHHhcCCHHH
Confidence 666655 467654
No 63
>PRK10091 MFS transport protein AraJ; Provisional
Probab=95.98 E-value=1.7 Score=43.01 Aligned_cols=113 Identities=11% Similarity=0.020 Sum_probs=58.4
Q ss_pred hHHHHHHhhhhhhHHHHhhcchhhhhcccCCCcc-chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHH
Q 016425 38 YIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLV 116 (390)
Q Consensus 38 y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~ 116 (390)
....+..|++... .....+.+++++.-++. .......+.+...+.....-.+.+|...|.-+..+..+..+..+.
T Consensus 9 ~~~~~~~~~~~~~----~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 9 ALGTFGLGMAEFG----IMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHhhHHH----HHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 3344455554333 22234455655533222 233444566677777777777788887655555665555554443
Q ss_pred HHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425 117 VPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR 166 (390)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~ 166 (390)
... .+ .++..++.-++.|++.+........+.+ .+|++
T Consensus 85 ~~~-----~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~ 123 (382)
T PRK10091 85 FTL-----SS-------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG 123 (382)
T ss_pred HHH-----hC-------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH
Confidence 322 11 1233344456677776665544444433 45654
No 64
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=95.97 E-value=1.2 Score=44.04 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=55.7
Q ss_pred hhHHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecc
Q 016425 49 LLPWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKG 127 (390)
Q Consensus 49 L~pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~ 127 (390)
....+....+.+.+.+++..++.+ ......+.+...+.....-.+.+|...|.-+..+.++..+..+.... .+
T Consensus 16 ~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~-----~~- 89 (392)
T PRK10473 16 PAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL-----AE- 89 (392)
T ss_pred HHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH-----hC-
Confidence 344455566777666665433221 22333455555666666666777776544344444444444333211 11
Q ss_pred cCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425 128 RVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY 167 (390)
Q Consensus 128 ~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~ 167 (390)
. +...++.-++.|++.+..+....++.. .+|++.
T Consensus 90 ---~---~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~ 124 (392)
T PRK10473 90 ---T---SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR 124 (392)
T ss_pred ---c---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence 1 122334455678887777776666655 466543
No 65
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=95.84 E-value=0.9 Score=46.25 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=88.2
Q ss_pred ccchhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHH
Q 016425 33 TFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVV 112 (390)
Q Consensus 33 ~~~~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v 112 (390)
|+|.+.++|-++-.++-+-|+.+-...+|.++.|.+.+...++++.||+..+...+...++..|.-.|.-...+-+++.+
T Consensus 42 rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~i 121 (480)
T KOG2563|consen 42 RRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGI 121 (480)
T ss_pred hHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHH
Confidence 56888899999999999999999999999999998667778999999999999999999999998888888888888876
Q ss_pred HHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhh
Q 016425 113 ALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGA 159 (390)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l 159 (390)
.-.+=.+...=.++ +...+-+++.+ ...+|..|--++++
T Consensus 122 Ga~Ir~iss~p~v~----~~f~~~l~~~G----q~iaa~Aq~Fim~l 160 (480)
T KOG2563|consen 122 GAWIRLISSLPFVP----PLFRRPLTHTG----QSIAAAAQPFILGL 160 (480)
T ss_pred HHHHhhhccCcccc----ccchhhhhHHh----HHHHHHhhhHhhcc
Confidence 65533222111111 11122244444 34556666667766
No 66
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=95.56 E-value=2.8 Score=41.65 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=20.1
Q ss_pred HHHHHhhhhhhHHHHhhcchhhhhc
Q 016425 40 IYFTLGLGFLLPWNAFITAVDYFSY 64 (390)
Q Consensus 40 ~f~llGi~~L~pwn~~ita~dyf~~ 64 (390)
.|+.++...=+|.....++.+.|-+
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~l~ 27 (402)
T PRK11902 3 AMLLLGFASGLPLALTSGTLQAWMT 27 (402)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3778888888999999999866644
No 67
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=95.46 E-value=2.3 Score=41.38 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=46.5
Q ss_pred cchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhh
Q 016425 57 TAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGF 135 (390)
Q Consensus 57 ta~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f 135 (390)
...+.+++.+.-+..+ ......+.+...+.....-++.+|+..|.-+..+..+..+..+.. ..+ .+
T Consensus 21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~------~~~-------~~ 87 (355)
T TIGR00896 21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR------SAP-------GT 87 (355)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH------Hhc-------cH
Confidence 3445666655422222 233345555666666666677777776555555554433333221 111 12
Q ss_pred HHHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425 136 TVTVGAVALSGLADALVQGGLIGAAGE 162 (390)
Q Consensus 136 ~~~l~~~~~~g~~~~~~q~s~~~la~~ 162 (390)
+..++..++.|++.+..+...-.+...
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~ 114 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKR 114 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 223444556677777666555444443
No 68
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.17 E-value=0.63 Score=48.36 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHhhhhhhhh-hhhhhhhccCCC--CcccchhHHHHHH--HHHHHhHHHHHHhhhhce
Q 016425 179 VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQA-VNEEKEEKGSLT--GSMWRSAVWHIVG--RVKWYGFGILLIYIVTLS 253 (390)
Q Consensus 179 ia~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~-~~e~~e~~~~~~--~~~~~~~~~~v~k--~i~~~~~~~~l~f~vTl~ 253 (390)
.+++..+..+++|+.++..|..-...+.++++ ..|+.|++++.. ++.++..+++.+| ++|++.++.++...+...
T Consensus 212 ~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~ 291 (495)
T KOG2533|consen 212 EGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYG 291 (495)
T ss_pred HHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhcccc
Confidence 34444556667777788777532222221111 001111111111 1134567777777 678888877777776653
Q ss_pred ec---cceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhh
Q 016425 254 IF---PGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYL 295 (390)
Q Consensus 254 vF---Pgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~ 295 (390)
++ |-+.....+. +.-..-.+-..+-+++.+|-.++.+..
T Consensus 292 ~~~~lpl~l~~~~~~---s~~~a~~ls~~~~~~g~v~~i~ag~ls 333 (495)
T KOG2533|consen 292 FSYWLPLYLKSNGGY---SELQANLLSTPYDVGGIVGLILAGYLS 333 (495)
T ss_pred HHHHHHHHHHcCCCc---ChHHhccccchHHhhhHHHHHHHHHHH
Confidence 32 3332210100 011111122345567777777666544
No 69
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=95.15 E-value=0.27 Score=50.66 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=28.2
Q ss_pred HHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHH
Q 016425 335 LTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSI 383 (390)
Q Consensus 335 l~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ 383 (390)
..+.||.+-=+.++.......|...|.++..+..++.+....+-+.|+.
T Consensus 394 ~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~ 442 (488)
T KOG2325|consen 394 FIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPI 442 (488)
T ss_pred hhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHH
Confidence 3445677666666666655566666666655555555555555555533
No 70
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=95.09 E-value=3.9 Score=40.61 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=66.7
Q ss_pred HHHHHHhhhhhhHHHHhhcc-hhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHH
Q 016425 39 IIYFTLGLGFLLPWNAFITA-VDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLV 116 (390)
Q Consensus 39 ~~f~llGi~~L~pwn~~ita-~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~ 116 (390)
....+.|+ +..++...++. .+-.+++|.-++.+ ....-.+.+...+.+...-++.+|...|.=+..+..+..++.+.
T Consensus 12 ~~~~~~~~-~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~ 90 (393)
T PRK09705 12 LVLVLIGL-NMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALM 90 (393)
T ss_pred HHHHHHHH-HcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 33445554 33355544443 46667666433322 23333455556666666667778777666666777777777665
Q ss_pred HHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHH
Q 016425 117 VPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDR 166 (390)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~ 166 (390)
.... + .+...++.-++.|++.+..+.....+... +|++
T Consensus 91 ~~~a-----~-------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~ 129 (393)
T PRK09705 91 RELY-----P-------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQR 129 (393)
T ss_pred HHHC-----c-------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcccc
Confidence 4432 1 12334556778888888888777777664 5533
No 71
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.08 E-value=1.6 Score=43.67 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHH
Q 016425 328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAET 365 (390)
Q Consensus 328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ 365 (390)
+.+..++..++.|+..+-.....+.+.++..+++.+..
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~ 351 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSAT 351 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceee
Confidence 33444555666777666665555566666666555443
No 72
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.06 E-value=2 Score=42.63 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=29.4
Q ss_pred cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHH-HHHHHHHHHHHHH
Q 016425 328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIV-IVLFLVLGLAAGS 382 (390)
Q Consensus 328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~-~~~~l~~Gl~~Gs 382 (390)
+.+...+..++.|+..+......+.+.++..+++.+..+... ..+...+|-.+|+
T Consensus 306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~ 361 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLS 361 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHH
Confidence 444556667777877777666666666665554443332222 2344444544443
No 73
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=95.04 E-value=3.4 Score=42.50 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=51.9
Q ss_pred ccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 327 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 327 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
.|.++.++.++++|+..+...........+..+++.|...-.+..++...|-.+|+.++-.
T Consensus 379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~ 439 (475)
T TIGR00924 379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATF 439 (475)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888899999999999999888888888899999888888888998888777543
No 74
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=94.99 E-value=5.1 Score=41.28 Aligned_cols=89 Identities=7% Similarity=-0.152 Sum_probs=51.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhh
Q 016425 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (390)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q 153 (390)
.+...+.+...+..++.-++.+|+..|.-+..+.++..++.++.... .+ ......+...++.-++.|++.|...
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~----~~--~~~~~~~~~~~~~r~l~G~~~g~~~ 133 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS----PG--SSPKSVMATLCFWRFWLGVGIGGDY 133 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc----cC--cccchHHHHHHHHHHHHHHHHhhhh
Confidence 34455666666777777777777765444445555555544432221 11 1111224445566677888888877
Q ss_pred chhhhhcC-CCCHHHH
Q 016425 154 GGLIGAAG-ELPDRYM 168 (390)
Q Consensus 154 ~s~~~la~-~fp~~~~ 168 (390)
.....+.+ .+|++.-
T Consensus 134 ~~~~~~~~e~~p~~~R 149 (502)
T TIGR00887 134 PLSAIITSEFATKKWR 149 (502)
T ss_pred HHHHHHHHHhcChhhH
Confidence 77777776 5776653
No 75
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=94.76 E-value=4.7 Score=39.78 Aligned_cols=29 Identities=17% Similarity=-0.051 Sum_probs=22.4
Q ss_pred hHHHHHHhhhhhhHHHHhhcchhhhhccc
Q 016425 38 YIIYFTLGLGFLLPWNAFITAVDYFSYLY 66 (390)
Q Consensus 38 y~~f~llGi~~L~pwn~~ita~dyf~~~~ 66 (390)
++.++.++...=+|++......+++.+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~ 31 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRED 31 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 55666777777789999999987777654
No 76
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=94.74 E-value=0.8 Score=46.20 Aligned_cols=108 Identities=15% Similarity=0.094 Sum_probs=61.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHH-HHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCF-ARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl-~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 352 (390)
....+..+++.+++....+.. ..++|+++..+. +-.+...++.. ..+. ..+.+..++..++.|+..|........
T Consensus 255 ~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~--~~~~-~~~~~~l~l~~~l~g~~~~~~~~~~~~ 331 (418)
T TIGR00889 255 IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY--GDPE-YFGYALLFLSMIVYGCAFDFFNISGSV 331 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--cCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888887765433 234555433332 22221111111 1111 111223455677888888877777777
Q ss_pred ecCCcCChhhHHHHhHHHH-HHHHHHHHHHHHHH
Q 016425 353 LAPKVVQLQHAETAGIVIV-LFLVLGLAAGSIVA 385 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~~~-~~l~~Gl~~Gs~ls 385 (390)
+..+..++++|..+-.+.. ....+|..+|..++
T Consensus 332 ~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 332 FVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777788888887766665 45566777776654
No 77
>PRK10054 putative transporter; Provisional
Probab=94.49 E-value=5.7 Score=39.56 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHH
Q 016425 79 YMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLV 116 (390)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~ 116 (390)
+.+...+.+...-.+.+|+..|.-+..+..+..+..+.
T Consensus 52 ~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~ 89 (395)
T PRK10054 52 ALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA 89 (395)
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 34445555555566777777665455555554444443
No 78
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=94.40 E-value=6 Score=39.44 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=52.7
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
...+..++-.+|..+..+.. ..++|+++..... +..+....+... + ++.+..++.+++.|+..|-.........
T Consensus 262 ~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~-~~~~~~~~~~~~-~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 336 (437)
T TIGR00792 262 MGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGIL-LMVLGYLIFFFA-G---SNLPLILVLIILAGFGQNFVTGLVWALV 336 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHHc-c---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888877654432 2334444333221 111111111111 1 2234445666777887776665555544
Q ss_pred CCcCCh-------hhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 355 PKVVQL-------QHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 355 p~~v~~-------~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
++.++. +.+..+..+.+++..+|..+|..++
T Consensus 337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~ 374 (437)
T TIGR00792 337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV 374 (437)
T ss_pred hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 554432 2234455666677777777776654
No 79
>TIGR00901 2A0125 AmpG-related permease.
Probab=94.29 E-value=3 Score=40.45 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.0
Q ss_pred hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHH
Q 016425 330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVI 370 (390)
Q Consensus 330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~ 370 (390)
+..+..+++.++..|......+.+-.+..++|+|...-.+.
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 350 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALL 350 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 44455666778888888888887777777777765544433
No 80
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=5.6 Score=39.01 Aligned_cols=137 Identities=16% Similarity=0.167 Sum_probs=75.7
Q ss_pred hhHHHHHHhhhhhhHHHHhhcchhhhhcccC-CCccchhhhhhHHHHHHHHHHHHHHhcCCCCc---ceEehhhHHHH-H
Q 016425 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLYP-EASVDRIFAVAYMLVGLFCLVIIVFYAHKSDA---WVRINVGLGLF-V 111 (390)
Q Consensus 37 ~y~~f~llGi~~L~pwn~~ita~dyf~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~Ri~~~l~~~-~ 111 (390)
....-.++|+|+-..-|...-..+-.-+..| +-+.-++.++.-++.|+.-.++. .+.|..+. .+-+++.+... .
T Consensus 12 t~llvalfG~gswa~vn~~wv~lp~lv~elpe~wslpsyl~vvVqla~lgpLi~t-llhk~~~~~i~~VPiif~ll~~a~ 90 (439)
T KOG4255|consen 12 THLLVALFGMGSWAGVNGLWVELPLLVKELPEGWSLPSYLSVVVQLANLGPLIVT-LLHKGAPGTIPTVPIIFVLLLLAC 90 (439)
T ss_pred HHHHHHHHccchHhhhcceeeehhHHHhhcCcccccchHHHHHHHHHcchhHHHH-HHHhhCCCcCCCCCchhHHHHHHH
Confidence 4444556677665555554333333333333 22344677777788887665553 33343332 22333333332 3
Q ss_pred HHHHHHHHhhhheecccC--CcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhhhHHH
Q 016425 112 VALLVVPVMDAVYIKGRV--GLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAGTAGS 178 (390)
Q Consensus 112 v~~~~~~~~~~~~~~~~~--~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G~~~s 178 (390)
++-+.++. .+.++.. ++.-. +--+...+...+.++.-..+++-.-+.+||.|.+++..|+|+|
T Consensus 91 v~~l~laf---lW~~ts~V~g~~hS-~afl~L~F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG~GLS 155 (439)
T KOG4255|consen 91 VCQLGLAF---LWHDTSPVFGALHS-WAFLSLLFGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVGMGLS 155 (439)
T ss_pred HHHHHHHH---HHhcchhhhcCcch-HHHHHHHHHHHHHHhhccchhhhhhhhCChHHHHHHHHhccHH
Confidence 33333322 2332210 11101 1123445566778888889999999999999999999999998
No 81
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=94.19 E-value=6.7 Score=39.14 Aligned_cols=54 Identities=20% Similarity=0.111 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 332 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 332 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+..+++++..|-..........+.+++++|..+-.+..+....|..+|..++
T Consensus 300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~ 353 (400)
T PRK11646 300 LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGG 353 (400)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccch
Confidence 344455666666544434444445566777888877777888777877776543
No 82
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=94.16 E-value=7 Score=39.24 Aligned_cols=78 Identities=10% Similarity=0.020 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhh
Q 016425 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI 157 (390)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~ 157 (390)
.+.+...+.+...-.+.+|+..|.-+..+..+..++.+.... .+ .+...++.-++.|++.+......+
T Consensus 59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----a~-------~~~~l~~~r~l~Gi~~~~~~~~~~ 126 (413)
T PRK15403 59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF-----TT-------SMTQFLIARFIQGTSICFIATVGY 126 (413)
T ss_pred HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH-----cC-------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666777777655455555555544443222 11 123344555667777776655555
Q ss_pred hhcC-CCCHHH
Q 016425 158 GAAG-ELPDRY 167 (390)
Q Consensus 158 ~la~-~fp~~~ 167 (390)
.... .+|++.
T Consensus 127 ~~~~~~~~~~~ 137 (413)
T PRK15403 127 VTVQEAFGQTK 137 (413)
T ss_pred HHHHHhcCHHH
Confidence 5443 566543
No 83
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=94.13 E-value=6.8 Score=38.99 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=50.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhh
Q 016425 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (390)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~ 152 (390)
......|.++..+...+.-.+..|++.|.=+..+..+..+..+..... . . . ++.-++.|++.+..
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-----~----~---~---~~~r~l~G~~~a~~ 105 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-----I----H---P---LLAYGLVGIGAAAY 105 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-----H----H---H---HHHHHHHHHHHHHH
Confidence 445557777777777777778888887666666666665543322111 1 0 1 23335678999999
Q ss_pred hchhhhhcC-CCCHH
Q 016425 153 QGGLIGAAG-ELPDR 166 (390)
Q Consensus 153 q~s~~~la~-~fp~~ 166 (390)
.....++.. .+|++
T Consensus 106 ~pa~~a~i~~~~~~~ 120 (393)
T PRK11195 106 SPAKYGILTELLPGE 120 (393)
T ss_pred HHHHHHHHHHHcCHH
Confidence 888888876 47754
No 84
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=94.10 E-value=5.7 Score=39.37 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=51.3
Q ss_pred HHHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccC
Q 016425 51 PWNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129 (390)
Q Consensus 51 pwn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~ 129 (390)
-|-.+-...+..++++.-++-+ ....-.+.+...+.++..-.+.+|+. |.|+..+.....+.... .. . ..
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~g-rr~~~~~~~~~~~~~~~-~~---~-~~--- 76 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAF-KRWFLFGSLATFAAAAG-RL---L-DP--- 76 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHH-HH---H-Hh---
Confidence 3555555555666655332222 22333445555555555666667765 33444333322222111 11 0 00
Q ss_pred CcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHH
Q 016425 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRY 167 (390)
Q Consensus 130 ~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~ 167 (390)
+ .+...++.-++.|++.+..-.....++..+|++-
T Consensus 77 -~--~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~ 111 (368)
T TIGR00903 77 -F--NYEWLLACQLLAALGQPFLLNAFAPAASQIREER 111 (368)
T ss_pred -c--cHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHH
Confidence 1 2344555566677777765555555666788654
No 85
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=94.01 E-value=0.42 Score=47.64 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 273 GIILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 273 ~~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
.-.+...+.++-.+|.....+..- .++|+.+.... +++....+++...+ ...+.+..++..++.|+..|-......
T Consensus 73 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~ 149 (481)
T TIGR00879 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA--LLFVIGAILMGLAA-FALSVEMLIVGRVLLGIGVGIASALVP 149 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH--HHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHhHHH
Confidence 345566777888887777654332 34555444333 22222222221111 011224556677788998888877777
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.+..+..++++|..+..+...+...|..+|..++
T Consensus 150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7778888889999999999999999999998887
No 86
>PRK15075 citrate-proton symporter; Provisional
Probab=93.90 E-value=5.2 Score=40.29 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCCCcceEehhhHHHHHHHHHHH
Q 016425 86 CLVIIVFYAHKSDAWVRINVGLGLFVVALLVV 117 (390)
Q Consensus 86 ~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~ 117 (390)
..++.-.+.+|+..|.-+..+..+..+..+..
T Consensus 72 g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~ 103 (434)
T PRK15075 72 GAIVLGAYIDRVGRRKGLIVTLSIMASGTLLI 103 (434)
T ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 34555567788887776667776666555543
No 87
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=93.69 E-value=7.1 Score=40.29 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhh
Q 016425 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI 157 (390)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~ 157 (390)
++..-.++.++-.-.+.+|...|.-+..+..+..++-+++|...- ..++..+++=++.|++.|..-.++-
T Consensus 81 s~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----------~~~~~~~~~R~lqGl~~g~~~pa~~ 150 (466)
T KOG2532|consen 81 SFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----------IGFYLLLVLRFLQGLGQGVLFPAIG 150 (466)
T ss_pred HHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----------hcchhhHHHHHHhHHHHhHHHhhhh
Confidence 444455555555555667777777777788888888888888632 1233445666677877777777777
Q ss_pred hhcCCCC
Q 016425 158 GAAGELP 164 (390)
Q Consensus 158 ~la~~fp 164 (390)
++.+...
T Consensus 151 ~i~~~W~ 157 (466)
T KOG2532|consen 151 SILAKWA 157 (466)
T ss_pred ceeeeEC
Confidence 7777643
No 88
>PRK09952 shikimate transporter; Provisional
Probab=93.48 E-value=9.5 Score=38.54 Aligned_cols=33 Identities=6% Similarity=0.045 Sum_probs=19.5
Q ss_pred HHHHHHhhhchhhhhhheeecCCcCChhhHHHH
Q 016425 334 LLTCLLGLTNGYLTSVLMILAPKVVQLQHAETA 366 (390)
Q Consensus 334 il~~lfgltnGy~~t~~mi~~p~~v~~~eke~a 366 (390)
+..++.++.+|...+....+.++..+.+.|-.+
T Consensus 348 ~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg 380 (438)
T PRK09952 348 FSIMLANIAHDMVVCVQQPMFTEMFGASYRYSG 380 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHH
Confidence 344555777776665555555666666555433
No 89
>PF13347 MFS_2: MFS/sugar transport protein
Probab=93.46 E-value=1.2 Score=44.81 Aligned_cols=106 Identities=10% Similarity=0.081 Sum_probs=71.5
Q ss_pred hhhHHHHhhcchhhhhcc-cCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheec
Q 016425 48 FLLPWNAFITAVDYFSYL-YPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIK 126 (390)
Q Consensus 48 ~L~pwn~~ita~dyf~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~ 126 (390)
..+.++...+...||.++ ..+++..+.+...+.++.++...+..++.+|+..+.-+..+..+.++..+...+...
T Consensus 237 ~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~---- 312 (428)
T PF13347_consen 237 QWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP---- 312 (428)
T ss_pred HHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh----
Confidence 445566656566666665 444455667777788888888888888999998777777888887777665544311
Q ss_pred ccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCC
Q 016425 127 GRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGEL 163 (390)
Q Consensus 127 ~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~f 163 (390)
...+..++..++.|++.+.......++.+..
T Consensus 313 ------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~ 343 (428)
T PF13347_consen 313 ------GSPWLVLILFILAGIGYGAFFVIPWAMLADV 343 (428)
T ss_pred ------hhHHHHHHHHHHhHhhhcccccccccccccc
Confidence 1224455667778888887777666666643
No 90
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=93.38 E-value=11 Score=39.02 Aligned_cols=59 Identities=8% Similarity=-0.106 Sum_probs=44.1
Q ss_pred ccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 327 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 327 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
-|.++.++..++.|+..+.+.-..+....+..+++.|..+..+..++...|-.+|+.++
T Consensus 380 vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 380 VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999988888877877877887777766666666666655543
No 91
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=93.30 E-value=11 Score=38.89 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=50.3
Q ss_pred cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+.|+.+...++.|+..+..+...+..+-+.++++.+..+..+..+...+|-.+|+.++
T Consensus 378 s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~ 435 (489)
T PRK10207 378 SPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA 435 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777788889999999999999988989999999999998888899999998776
No 92
>PRK09848 glucuronide transporter; Provisional
Probab=93.23 E-value=1.6 Score=44.20 Aligned_cols=104 Identities=9% Similarity=0.065 Sum_probs=50.2
Q ss_pred hhHHHHhhcchhhhhc-ccCCCccchhh-hhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheec
Q 016425 49 LLPWNAFITAVDYFSY-LYPEASVDRIF-AVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIK 126 (390)
Q Consensus 49 L~pwn~~ita~dyf~~-~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~ 126 (390)
...+..+.+...||.+ .+.+++....+ .....+..++...+..++.+|.+.+.-+..+.++.++..+.+.. ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~-----~~ 315 (448)
T PRK09848 241 LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW-----VS 315 (448)
T ss_pred HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----cC
Confidence 3344444444555443 34332222212 11223334445555556777777665556666665555443321 11
Q ss_pred ccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425 127 GRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE 162 (390)
Q Consensus 127 ~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~ 162 (390)
+ ..++...+..++.|++.+.......++.+.
T Consensus 316 -~----~~~~~~~~~~~l~g~G~~~~~~~~~al~~~ 346 (448)
T PRK09848 316 -V----WSLPVALVALAIASIGQGVTMTVMWALEAD 346 (448)
T ss_pred -c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112333344556677777777766666554
No 93
>PRK10429 melibiose:sodium symporter; Provisional
Probab=92.76 E-value=1.4 Score=45.23 Aligned_cols=106 Identities=11% Similarity=-0.056 Sum_probs=48.4
Q ss_pred HHHHhhcchhhhhcccCCC-ccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccC
Q 016425 51 PWNAFITAVDYFSYLYPEA-SVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129 (390)
Q Consensus 51 pwn~~ita~dyf~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~ 129 (390)
..+...+...||.++.-+. +....+.....+..++...+..++.+|+..+.....+..+.++..+...... ... .
T Consensus 246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~--~~~--~ 321 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG--LAA--P 321 (473)
T ss_pred HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh--ccC--c
Confidence 3343333344555443222 2222232233355566666666777787766555555554443333221110 111 1
Q ss_pred CcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCC
Q 016425 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAGEL 163 (390)
Q Consensus 130 ~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~f 163 (390)
...+..++..++.|++.+..+....++.+..
T Consensus 322 ---~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~ 352 (473)
T PRK10429 322 ---HNALLIVIAGILLNIGTALFWVLQVIMVADT 352 (473)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1122333444556666666665555555433
No 94
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.74 E-value=1.1 Score=44.99 Aligned_cols=93 Identities=14% Similarity=0.208 Sum_probs=62.3
Q ss_pred hhhhhHHHHHHHHHHHHHH---hcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhh
Q 016425 74 IFAVAYMLVGLFCLVIIVF---YAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADA 150 (390)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~ 150 (390)
...+.+-.-.++..++++. +.+|+.++.-++.|+.++..+.++..+ .+ .|...++.=.+.|++++
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf-----g~-------sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF-----GN-------SYPMLFVARSLQGVGSA 174 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH-----cc-------hhHHHHHHHHHhhhhHH
Confidence 3344444444555555555 345777788888888887777665433 22 34456666778999999
Q ss_pred hhhchhhhhcC-CCCHHHHHHHHhhhHHH
Q 016425 151 LVQGGLIGAAG-ELPDRYMQALVAGTAGS 178 (390)
Q Consensus 151 ~~q~s~~~la~-~fp~~~~~a~~~G~~~s 178 (390)
....+.+++.+ .||++-..+-..|.+.+
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialg 203 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALG 203 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHH
Confidence 99999999877 69988765555565544
No 95
>PRK11010 ampG muropeptide transporter; Validated
Probab=92.56 E-value=14 Score=38.07 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=56.7
Q ss_pred hHHHHHHhhhhhhHHHHhhcchhhhhcccCCCccc--hhhhhhHHHHHHHHHHHHHHhcCCCC----cceE--ehhhHHH
Q 016425 38 YIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASVD--RIFAVAYMLVGLFCLVIIVFYAHKSD----AWVR--INVGLGL 109 (390)
Q Consensus 38 y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~R--i~~~l~~ 109 (390)
+..++++|...-+|+-......+.+.+.. |.+.+ ..++ ....+. ....+.-.+..|.+ -|.| +..+.+.
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~-~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~ 90 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFS-LVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLL 90 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHH
Confidence 56778888888888887777664443322 22211 1111 111111 23344444455542 1333 2244444
Q ss_pred HHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425 110 FVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDR 166 (390)
Q Consensus 110 ~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~ 166 (390)
.+++...+.. .+ + ...++...+..++.|++.+..+...-++.. .+|++
T Consensus 91 ~~~~~~~~a~-----~~--~--~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 91 LLVAIAAMGF-----LE--P--GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHH-----cC--C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 4444433222 11 1 122344455555677777777666666665 46643
No 96
>PRK10489 enterobactin exporter EntS; Provisional
Probab=92.36 E-value=2 Score=42.92 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhh
Q 016425 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI 157 (390)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~ 157 (390)
.+.+..++..++..++.+|.+.+..+..+.++..+.++... ..+ ......++..+.|++.+..+....
T Consensus 267 ~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~g~~~~~~~~~~~ 334 (417)
T PRK10489 267 AVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-----LMP-------MWILAVLCLALFGYLSAISSLLQY 334 (417)
T ss_pred HHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-----ccc-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556655555553322223344444443333221 111 122334555667777777666666
Q ss_pred hhcC-CCCHHHH
Q 016425 158 GAAG-ELPDRYM 168 (390)
Q Consensus 158 ~la~-~fp~~~~ 168 (390)
++.. ..|+++-
T Consensus 335 ~~~~~~~p~~~~ 346 (417)
T PRK10489 335 TLLQTQTPDEML 346 (417)
T ss_pred HHHHhhCCHHHH
Confidence 6644 5787753
No 97
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=92.23 E-value=0.65 Score=44.10 Aligned_cols=107 Identities=15% Similarity=0.056 Sum_probs=73.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhc-cCchh-HHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 274 IILIAGYNVFDLVGKSLTAIYLL-ENEKV-AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 274 ~~~~~~FnvgD~iGR~~~~~~~~-~~~~~-l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
-.....+.+++.+++....+..- .++|+ +.+..+...+...+...+ ++.+..++..++.|+..|.......
T Consensus 37 ~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~ 109 (352)
T cd06174 37 GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SSLWLLLVGRFLLGLGGGALYPAAA 109 (352)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHcccccccHhHH
Confidence 34566788888888877654332 33444 344444444433332222 2345566777888999888888888
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
.+.++..++|||..+..+.......|..+|..++-.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (352)
T cd06174 110 ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145 (352)
T ss_pred HHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888899999999998888888888876643
No 98
>TIGR00898 2A0119 cation transport protein.
Probab=91.82 E-value=1.1 Score=46.05 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhh
Q 016425 270 DWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTS 348 (390)
Q Consensus 270 ~w~~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t 348 (390)
++..-....+|.+|-.+|..+.+... ...+|+.+..+. ++.....+.+.. -++.+..++.-++.|+..|....
T Consensus 126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~--~~~~i~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~ 199 (505)
T TIGR00898 126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLST--LVTAVSGVLTAF----SPNYTVFLVFRLLVGMGIGGIWV 199 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHH--HHHHHHHHHHHH----cccHHHHHHHHHHHHhhccchHH
Confidence 45455667788899999888765543 245565544332 222211122211 23445567777888999999888
Q ss_pred hheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 349 VLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 349 ~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
....+..+..++++|..++.+...+...|..+|..++.+
T Consensus 200 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 200 QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999988999998888887654
No 99
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=91.70 E-value=10 Score=36.60 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHhhhhhhhhhchhhhhcCCC-CH
Q 016425 134 GFTVTVGAVALSGLADALVQGGLIGAAGEL-PD 165 (390)
Q Consensus 134 ~f~~~l~~~~~~g~~~~~~q~s~~~la~~f-p~ 165 (390)
.|...++..++.|.+.+++|.+.=.+.+.. |+
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~ 41 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPI 41 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc
Confidence 467778888899999999999999888855 44
No 100
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=90.64 E-value=4.7 Score=39.77 Aligned_cols=79 Identities=9% Similarity=-0.016 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhh
Q 016425 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLI 157 (390)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~ 157 (390)
...+..++.....-++.+|.+.+.-+..+.+...+..+..+.. + ..+..+....+-|+.-++...+.+
T Consensus 248 ~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~-------~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 248 IGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-----E-------AFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-----h-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666677788887766666666666665544321 1 224445556778888888888888
Q ss_pred hhcCCCCHHHH
Q 016425 158 GAAGELPDRYM 168 (390)
Q Consensus 158 ~la~~fp~~~~ 168 (390)
.+....|++..
T Consensus 316 ~~i~~~~~~~~ 326 (382)
T TIGR00902 316 RYIAAQPGSEI 326 (382)
T ss_pred HHHHhCCHhhH
Confidence 88887777553
No 101
>PF13347 MFS_2: MFS/sugar transport protein
Probab=90.42 E-value=21 Score=35.81 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=42.0
Q ss_pred ccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhH-------HHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 327 RTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHA-------ETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 327 ~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~ek-------e~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
.+.+..++...+.|+..|-........-++.++.+|. .....+.++..-.|..+|..+..+
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4567778888899999888887777777777764432 234455666777777777765543
No 102
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=90.38 E-value=1.3 Score=42.55 Aligned_cols=112 Identities=12% Similarity=0.063 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 274 IILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 274 ~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
-....++.++..++.....+.. ..++|+.+... ++..+..-+.......+. .+.+..++..++.|+.+|.......
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~ 114 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG--LNIWQVYVLAGILAIAQAFFTPAYQ 114 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776654322 34556544333 333322222211111111 2445566777788999998888888
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
.+.++..+++||..+..+...+..+|..+|..++-.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 150 (365)
T TIGR00900 115 AMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150 (365)
T ss_pred HHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999888888888888888776543
No 103
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=90.20 E-value=25 Score=36.46 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=21.6
Q ss_pred hhhheeecCCcCChhhHHHHhHHHHHHHHHH
Q 016425 347 TSVLMILAPKVVQLQHAETAGIVIVLFLVLG 377 (390)
Q Consensus 347 ~t~~mi~~p~~v~~~eke~ag~~~~~~l~~G 377 (390)
+.+....++|-++++.|..|..+..+..-++
T Consensus 386 gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~ 416 (485)
T KOG0569|consen 386 GPIPWFIGAELFPQSARSAAQSVATAVNWLS 416 (485)
T ss_pred CchhHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 5556667778888888888877766654443
No 104
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=90.16 E-value=1.3 Score=44.35 Aligned_cols=139 Identities=13% Similarity=-0.007 Sum_probs=74.8
Q ss_pred HhHHHHHHhhhhceeccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhh-hccCchhHHH-HHHHHHHHHhhhh
Q 016425 240 YGFGILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIY-LLENEKVAIG-GCFARLLFFPLFL 317 (390)
Q Consensus 240 ~~~~~~l~f~vTl~vFPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~-~~~~~~~l~~-lsl~R~ifiplf~ 317 (390)
.....++..+....++|-+...-.+....+....-....++++++.+.+...... ...++|++.. ..++..+.. +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~---~ 91 (400)
T PRK11646 15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGF---A 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHH---H
Confidence 3344455555555556654211111111122223344556677765555443322 2234555433 333332222 2
Q ss_pred hcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 318 GCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 318 ~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.+.. .++.+..++..++.|+.+|..........++..++|+|..+..+.......|..+|..++
T Consensus 92 ~~~~----~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~ 155 (400)
T PRK11646 92 TMAI----AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLG 155 (400)
T ss_pred HHHH----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 123355666777889888877665555556777788898888888888888888887665
No 105
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=89.06 E-value=3.9 Score=40.84 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=51.3
Q ss_pred HHHHhhcchhhhhcccCC-CccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccC
Q 016425 51 PWNAFITAVDYFSYLYPE-ASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129 (390)
Q Consensus 51 pwn~~ita~dyf~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~ 129 (390)
.++...+...||.+..-+ .+....+...+.+..++...+..++.+|+..+..+..+..+.++..+.... ..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-----~~--- 308 (437)
T TIGR00792 237 AFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF-----AG--- 308 (437)
T ss_pred HHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----cc---
Confidence 344433334555443222 222233444456666777777777788877655555665555544443221 11
Q ss_pred CcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAGE 162 (390)
Q Consensus 130 ~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~ 162 (390)
. ..+...+..++.|++.+..+....++.+.
T Consensus 309 -~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (437)
T TIGR00792 309 -S--NLPLILVLIILAGFGQNFVTGLVWALVAD 338 (437)
T ss_pred -h--hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 11223344455667777666666666553
No 106
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=88.66 E-value=2.7 Score=40.87 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=64.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.....+.++..+|.....+.. ..++|+.+.... ++.....+.+.. .++.+..++..++.|+..|...+.....
T Consensus 44 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 117 (385)
T TIGR00710 44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL--FIFALSSLGLAL----SNNIETLLVLRFVQAFGASAGSVISQAL 117 (385)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH--HHHHHHHHHHHH----HccHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 445677777777777655433 234554333221 222111111111 1233455667778899888887777777
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
.++..++++|..+-.+.......|..+|..++-
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 150 (385)
T TIGR00710 118 VRDIYPGEELSRIYSILMPVLALAPAVAPLLGG 150 (385)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888888877777877777766553
No 107
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=88.60 E-value=1.8 Score=34.93 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=45.4
Q ss_pred chhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 329 EIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 329 d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
.+...+..++.|+..|........+.++..++++|..+..+.......|..+|..++-
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 108 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGG 108 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHH
Confidence 3455677788899999888888778888888888888888888887888777766543
No 108
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=88.56 E-value=4.8 Score=40.08 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=65.6
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
....+.++-.+|+....... ..++|+...... +++....+.+. +.++.+..++.-++.|+.+|-.......+.
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~--~~~~~~~~~~~----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 133 (394)
T PRK10213 60 SVTVTAFVAMFASLFITQTIQATDRRYVVILFA--VLLTLSCLLVS----FANSFSLLLIGRACLGLALGGFWAMSASLT 133 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH--HHHHHHHHHHH----HHChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34567777777777765432 235555433332 22222222222 123445667777888999988877777777
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
++..++++|..+-.+.....++|..+|..++-
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~ 165 (394)
T PRK10213 134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLGS 165 (394)
T ss_pred HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877777777777777666553
No 109
>TIGR00893 2A0114 d-galactonate transporter.
Probab=88.45 E-value=2.1 Score=41.25 Aligned_cols=105 Identities=13% Similarity=0.040 Sum_probs=69.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHH-HHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAI-GGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~-~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 352 (390)
.....+.++..++.....+.. ..++|+.+ +..+...+...++.. .++.+..++..++.|+..|...+....
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~ 105 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF-------AGAYVSLYILRVLLGAAEAPFFPGIIL 105 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 456678888888877765433 23445433 222222222111111 124455667778889999988888888
Q ss_pred ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
+.++..++++|..+..+.......|..+|..++-
T Consensus 106 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 106 IVASWFPASERATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred HHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 8888888899999988888888888888877654
No 110
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=88.30 E-value=3.2 Score=42.97 Aligned_cols=148 Identities=13% Similarity=0.049 Sum_probs=79.5
Q ss_pred HHHHHHhHHHHHHhhhhceeccceEeeeec--cCCCchhHHHHHHHHHHhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 016425 235 GRVKWYGFGILLIYIVTLSIFPGYITEDVH--SEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLF 312 (390)
Q Consensus 235 k~i~~~~~~~~l~f~vTl~vFPgi~~~~~~--~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~~~~~~l~~lsl~R~if 312 (390)
|.+|...++-++..+..-.++|+--+...+ .+...+++-. .....++|=.++-...+++.-++.+.-+-+.+.|++.
T Consensus 34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~-viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGL-VIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhH-HHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 667778888888888888888886433222 1222344433 3456888888888877666554443234444555554
Q ss_pred Hh--hhhhcccCCcccccc--hhHHHHHHHHhhhchhhhhhheeecC-CcCChhhHHHHhHHH--HHHHHHHHHHHHHHH
Q 016425 313 FP--LFLGCLHGPKFFRTE--IPVTLLTCLLGLTNGYLTSVLMILAP-KVVQLQHAETAGIVI--VLFLVLGLAAGSIVA 385 (390)
Q Consensus 313 ip--lf~~~~~~p~~~~~d--~~~~il~~lfgltnGy~~t~~mi~~p-~~v~~~eke~ag~~~--~~~l~~Gl~~Gs~ls 385 (390)
+. +..+|... .+++ |.+.+-=++.|+.+|-.+.+=-..+. ..++++-|..|+.-. .++..+|-++|.+++
T Consensus 113 ~~g~llY~~l~~---~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 113 IIGNLLYLALAY---VPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHh---cccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 43 23324321 2332 33333334668877655443322222 223445555555555 556666666666555
Q ss_pred H
Q 016425 386 W 386 (390)
Q Consensus 386 ~ 386 (390)
-
T Consensus 190 ~ 190 (488)
T KOG2325|consen 190 P 190 (488)
T ss_pred h
Confidence 3
No 111
>TIGR00895 2A0115 benzoate transport.
Probab=88.29 E-value=3.9 Score=39.67 Aligned_cols=104 Identities=19% Similarity=0.093 Sum_probs=65.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHH-HHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCF-ARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl-~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 352 (390)
.+...+.++..+|.....+..- .++|+.+.... +-.+. .+.+.. .++.+..++..++.|+..|........
T Consensus 56 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (398)
T TIGR00895 56 FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF---TLLCAL----ATNVTQLLILRFLAGLGLGGLMPNLNA 128 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH---HHHHHH----ccchHHHHHHHHHHhcccccchhhHHH
Confidence 3456777777777766544332 34454433322 11111 111111 123344566777889988888777777
Q ss_pred ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+..+..++++|..+..+......+|..+|..++
T Consensus 129 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 161 (398)
T TIGR00895 129 LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161 (398)
T ss_pred HHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence 777878888898888888888888888887765
No 112
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=88.20 E-value=2.4 Score=43.73 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=75.2
Q ss_pred HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 352 (390)
.....+++|-.+|..+..+..- ..||+.+... +.-.+...+..+..... -..+.+..++.-++.|+..|-.......
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 138 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSS-PKSVMATLCFWRFWLGVGIGGDYPLSAI 138 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4567788888888888765442 4566544332 21222211111111100 0112345677778889999998888888
Q ss_pred ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
+..+..++++|..+..++..+..+|..+|..++.+
T Consensus 139 ~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 139 ITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98999999999999999999999999999887654
No 113
>PRK12382 putative transporter; Provisional
Probab=87.88 E-value=2.8 Score=41.39 Aligned_cols=117 Identities=13% Similarity=-0.057 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHH-HHHHHHHhhhhhcccCCccc-ccchhHHHHHHHHhhhchhh
Q 016425 270 DWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGC-FARLLFFPLFLGCLHGPKFF-RTEIPVTLLTCLLGLTNGYL 346 (390)
Q Consensus 270 ~w~~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~-~~d~~~~il~~lfgltnGy~ 346 (390)
.+..-.....+.++..+++....+.. ..++|+.+... +...+..-.+..+...+... .+.+..++.-++.|+..|..
T Consensus 50 ~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 129 (392)
T PRK12382 50 NTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQL 129 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 44445567788888888777665433 34566654433 22222211222222212111 23233445556778888766
Q ss_pred hhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 347 TSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 347 ~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
.+..+...++..+++||..+-.....+...|..+|..++-
T Consensus 130 ~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~ 169 (392)
T PRK12382 130 LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL 169 (392)
T ss_pred HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 6666666677788888988888888888888888777653
No 114
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=87.85 E-value=2.2 Score=42.80 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=63.4
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
...+|.++=.+|.....+.. ..++|++....+ +++....+++... ++.+..++.-++.|+.+|-.....+.+.
T Consensus 48 ~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 121 (412)
T TIGR02332 48 AATLFYAAYVICGIPSNIMLAIIGARRWIAGIM--VLWGIASTATMFA----TGPESLYLLRILVGIAEAGFLPGILLYL 121 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH--HHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34556666666655544322 234555443333 2222222222221 2334556667788999887766666666
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
.+..++++|..+..+.......|..+|..++-
T Consensus 122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 122 TFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888999888888888888888877653
No 115
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=87.80 E-value=2.3 Score=41.17 Aligned_cols=105 Identities=14% Similarity=0.020 Sum_probs=59.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.....+.++..++.....+.. ..++|+...... ++.....+.+...+. +.+..++..++.|+.+|.. ..+..+
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~i~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~-~~~~~~ 114 (366)
T TIGR00886 41 NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL--LLLAIPCLWAGLAVQ---SYSVLLLLRLFIGIAGGSF-ASCMPW 114 (366)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH--HHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhchhh-HhHHHH
Confidence 446678888888887765543 234555433322 222221222211110 3345566777788887654 334445
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+..+++||..+..+...+...|..+|..++
T Consensus 115 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 115 ISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 55666778888887777766666666665554
No 116
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=87.02 E-value=2.3 Score=42.07 Aligned_cols=114 Identities=15% Similarity=-0.001 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHH-HHHHHHhhhhhcccCCcc-cccchhHHHHHHHHhhhchhhhhh
Q 016425 273 GIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCF-ARLLFFPLFLGCLHGPKF-FRTEIPVTLLTCLLGLTNGYLTSV 349 (390)
Q Consensus 273 ~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl-~R~ifiplf~~~~~~p~~-~~~d~~~~il~~lfgltnGy~~t~ 349 (390)
.-....++.++..++.....+.. ..++|+++..+. +..+.............+ ..+.+..++.-++.|+..|.....
T Consensus 53 ~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 132 (399)
T PRK05122 53 AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTG 132 (399)
T ss_pred HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcch
Confidence 34556788888888877765433 346666554443 332222211111111111 112233455667888888877666
Q ss_pred heeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 350 LMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 350 ~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
.....++..++++|..+..+.......|..+|..++-
T Consensus 133 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 169 (399)
T PRK05122 133 SILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV 169 (399)
T ss_pred HHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH
Confidence 6666677778888888877777777777777776653
No 117
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=87.00 E-value=4.1 Score=39.73 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=65.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
....++.+++.+|.....+.. ..++|+.+.... ++..-..+.+.. .++.+..++..++.|+..|-.......+
T Consensus 51 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 124 (405)
T TIGR00891 51 SLISAALISRWFGALMFGLWGDRYGRRLPMVTSI--VLFSAGTLACGF----APGYITMFIARLVIGIGMGGEYGSSAAY 124 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 345667777777777665433 245565544332 222211222211 2233445666778888887777777777
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
..+..++++|..+..+.......|..+|..++-
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888889998888888888888888776653
No 118
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=86.84 E-value=5.6 Score=39.13 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=54.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
....++.+++.++.....+.. ..++|+.+.... ++.....+++.. .++.+..++..++.|+..|+... ....
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 130 (408)
T PRK09874 58 LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSA--LGMGIVMVLMGL----AQNIWQFLILRALLGLLGGFVPN-ANAL 130 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHH--HHHHHHHHHHHH----HhhHHHHHHHHHHHHHhhhhHHh-HHHH
Confidence 456677778877776654332 234454433222 222111111111 12334455666777887776533 3334
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.++..++++|..+..+.......|..+|..++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (408)
T PRK09874 131 IATQVPRNKSGWALGTLSTGGVSGALLGPLAG 162 (408)
T ss_pred HHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777766666666666666655443
No 119
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=86.72 E-value=4.3 Score=40.07 Aligned_cols=77 Identities=6% Similarity=-0.098 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhh
Q 016425 80 MLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGA 159 (390)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l 159 (390)
.+..+......-++.+|.+.+..+..+++...+.++.... .+ ..+...+..++.|++.++.......+
T Consensus 250 ~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~l~g~~~~~~~~~~~~~ 317 (382)
T PRK11128 250 VVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS-----TT-------ALPWLIVIQILHCGTFTVCHLAAMRY 317 (382)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-----hh-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556677766555566666655555443221 11 12334455667788888888888887
Q ss_pred cCCCCHHHH
Q 016425 160 AGELPDRYM 168 (390)
Q Consensus 160 a~~fp~~~~ 168 (390)
....+++..
T Consensus 318 ~~~~~~~~~ 326 (382)
T PRK11128 318 IAARPGSEV 326 (382)
T ss_pred HHHCCHhhh
Confidence 766665543
No 120
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=86.48 E-value=43 Score=34.58 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCC
Q 016425 85 FCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELP 164 (390)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp 164 (390)
+..+..-.+.+|+..|.-+..+..+..+..+.+... .+ + ....|...++.-++.|++.+..-++.-.++..||
T Consensus 85 l~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a----~~-~--~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp 157 (462)
T PRK15034 85 LLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIA----VQ-N--PNTPFGIFIVIALLCGFAGANFASSMGNISFFFP 157 (462)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----Hc-c--cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCC
Confidence 334444555666665443444444444333333221 01 0 1123455566666777765544443334444688
Q ss_pred HHH
Q 016425 165 DRY 167 (390)
Q Consensus 165 ~~~ 167 (390)
++-
T Consensus 158 ~~~ 160 (462)
T PRK15034 158 KAK 160 (462)
T ss_pred HhH
Confidence 763
No 121
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=86.38 E-value=29 Score=37.27 Aligned_cols=63 Identities=8% Similarity=0.280 Sum_probs=41.5
Q ss_pred cchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHH
Q 016425 57 TAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPV 119 (390)
Q Consensus 57 ta~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~ 119 (390)
.+.+-++++|.-++.+ ..+...|.+.+.+..+...++..|.+.+.=+..+.+++.+..++..+
T Consensus 54 ~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al 117 (633)
T TIGR00805 54 SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL 117 (633)
T ss_pred hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence 3345557767543333 34556788888888888888988877555566777777666555444
No 122
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=85.73 E-value=3.4 Score=39.42 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=70.8
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhH-HHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l-~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
....+.++-.++........ ..++|+. .+..+++.+..-+..+. ++.+..++..++.|+.+|........+
T Consensus 37 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~ 109 (352)
T PF07690_consen 37 LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------SNFWLLLIARFLLGIGSGFFSPASNAL 109 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-------hhHHHHhhhcccccccccccccccccc
Confidence 45567777777776654432 2345554 33334444331111111 344566778888899998888888888
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
.++..+++||..+-.+......+|..+|..++-.
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 143 (352)
T PF07690_consen 110 IADWFPPEERGRAFGILSAGFSLGSILGPLLGGF 143 (352)
T ss_dssp HHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhccccccchhhhhhhcccchhhh
Confidence 8888888999999999999999999999877643
No 123
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=85.65 E-value=5 Score=39.65 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhch
Q 016425 76 AVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGG 155 (390)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s 155 (390)
...+.+...+..++.-++.+|...+..+..+++...++++.... .+ . .+...+..++.|++.+..++.
T Consensus 261 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~----~---~~~~~~~~~~~g~~~~~~~~~ 328 (406)
T PRK11551 261 QIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA-----AP----S---FAGMLLAGFAAGLFVVGGQSV 328 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----cC----c---HHHHHHHHHHHHHHHHhHHHH
Confidence 34455666677777777777765443333444433333332211 11 1 111223344556655556666
Q ss_pred hhhhcC-CCCHHH
Q 016425 156 LIGAAG-ELPDRY 167 (390)
Q Consensus 156 ~~~la~-~fp~~~ 167 (390)
.+++.. .+|++.
T Consensus 329 ~~~~~~~~~p~~~ 341 (406)
T PRK11551 329 LYALAPLFYPTQV 341 (406)
T ss_pred HHHHHHHHcchhh
Confidence 666554 456654
No 124
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=85.58 E-value=3.1 Score=43.07 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=74.3
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHH-HHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFA-RLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~-R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
...+|-+|-.+|-++..+.- ...||..+..+.+ -++-..++.+|.. +++....++==++.|+..|-..+...+|
T Consensus 65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~----~~~~e~li~GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS----APSFEMLILGRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35677888888887765433 2456644333221 1111222333332 3343444555667899999999999999
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
-.|..|++.|...|.+..++.+.|+.+|..+++.
T Consensus 141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~ 174 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLP 174 (485)
T ss_pred HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccH
Confidence 9999899999999999999999999999888754
No 125
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=85.40 E-value=3.3 Score=45.33 Aligned_cols=106 Identities=11% Similarity=-0.011 Sum_probs=68.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
+..++.+|-.+|..+..+..- ..+|+.++... +++....+++.. -++.+..++.-++.|+..|-....+..+.
T Consensus 207 l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l--il~~i~~ll~af----a~s~~~llv~R~l~G~g~g~~~p~~~~~i 280 (742)
T TIGR01299 207 LGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL--SVNGFFAFFSSF----VQGYGFFLFCRLLSGFGIGGAIPIVFSYF 280 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888877655432 35555433332 222211112211 12335566777788998887778888888
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
.+..++++|..+..++..+..+|..+|..++..
T Consensus 281 sE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~ 313 (742)
T TIGR01299 281 AEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA 313 (742)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899888888888888888888766543
No 126
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=84.68 E-value=3.5 Score=41.77 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=68.3
Q ss_pred HHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecC
Q 016425 277 IAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP 355 (390)
Q Consensus 277 ~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p 355 (390)
...|.++..+|.....+.. ..++|+.+.... +++....+.|... ++.+..++..++.|+..|........+.+
T Consensus 43 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~~~G~~~~~~~~~~~~~i~ 116 (485)
T TIGR00711 43 ITSYMLANAISIPLTGWLAKRFGTRRLFLIST--FAFTLGSLLCGVA----PNLELMIIFRVIQGFGGGPLIPLSFSTLL 116 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH--HHHHHHHHHHhCc----CCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5567777777766654433 245565544333 2332222333322 33345567777889999988888888888
Q ss_pred CcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 356 KVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 356 ~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+..++++|..+..+......+|..+|..++
T Consensus 117 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 146 (485)
T TIGR00711 117 NIYPPEKRGRAMAIWGLTVLVAPALGPTLG 146 (485)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhhhhhccH
Confidence 888899999988888888888888776654
No 127
>PRK11462 putative transporter; Provisional
Probab=84.28 E-value=11 Score=38.60 Aligned_cols=52 Identities=12% Similarity=-0.066 Sum_probs=29.3
Q ss_pred HHHHhhcchhhhhcccCCC-ccchhhhhhHHHHHHHHHHHHHHhcCCCCcceE
Q 016425 51 PWNAFITAVDYFSYLYPEA-SVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVR 102 (390)
Q Consensus 51 pwn~~ita~dyf~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R 102 (390)
..+...+..-||-.++-+. +....+...+.+.+++...+..++.+|...+..
T Consensus 243 ~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~ 295 (460)
T PRK11462 243 AVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI 295 (460)
T ss_pred HHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 3344444455655544332 222345556677777777777778777665433
No 128
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=83.50 E-value=7.1 Score=39.19 Aligned_cols=104 Identities=9% Similarity=0.041 Sum_probs=59.1
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
...+|.+|-.+|........ ..+||+++.... +++....+.|... ++.+..++.-++.|+..|...+......
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~--~~~~~~~~~~~~a----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~ 129 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGA--LIFTLACAATLFT----TSMTQFLIARFIQGTSICFIATVGYVTV 129 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHH--HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777654322 235565444332 3444333333322 2334556666778988887666665555
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
++..+++++..+-.+......+|-.+|..++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg 160 (413)
T PRK15403 130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSG 160 (413)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667776665555555555555555544
No 129
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=83.45 E-value=20 Score=34.47 Aligned_cols=77 Identities=12% Similarity=-0.091 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchh
Q 016425 77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL 156 (390)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~ 156 (390)
..+.....+..++..++.+|++.+.-+..+..+.++..++... .+ . ......+.+.|++.+..-...
T Consensus 185 s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~-----~~----~----~~~~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 185 AYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL-----TH----G----YVAMWFVLALGLFNSIMFPTI 251 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-----cC----C----HHHHHHHHHHHHHHHHHHHHH
Confidence 3555566667777778888887544343444444433322111 11 1 112234557888999999998
Q ss_pred hhhcCC-CCHH
Q 016425 157 IGAAGE-LPDR 166 (390)
Q Consensus 157 ~~la~~-fp~~ 166 (390)
++++.. +|++
T Consensus 252 ~s~a~~~~~~~ 262 (310)
T TIGR01272 252 FSLALNALGRH 262 (310)
T ss_pred HHHHHhhhhhh
Confidence 988875 5653
No 130
>PRK10054 putative transporter; Provisional
Probab=83.40 E-value=6.4 Score=39.19 Aligned_cols=105 Identities=12% Similarity=-0.036 Sum_probs=55.5
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHH-HHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAI-GGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~-~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
....+.++..+++....+.. ..++|+.. +..++..+-..++.+ .++.+..++...+.|...+-........
T Consensus 48 ~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 120 (395)
T PRK10054 48 AMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL-------VNNVTLVVLFFALINCAYSVFSTVLKAW 120 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665544332 23445533 333333332222211 1222333333334454444333334444
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
.++..++++|..+-.+.....++|..+|..++-.
T Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 121 FADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888778888888888888777654
No 131
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=83.02 E-value=8.7 Score=38.70 Aligned_cols=105 Identities=11% Similarity=-0.085 Sum_probs=51.3
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
....+.++-.+|.....+.. ..++|+...... ++.....+.+...|..-.+.+..++..++.|+..|-.........
T Consensus 66 ~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i 143 (438)
T TIGR00712 66 ALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTM 143 (438)
T ss_pred HHHHHHHHHHHhhhccchhhhccCCceehHHHH--HHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 34566667666666654433 234444332221 121111111111121112222334555667877776544444444
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGS 382 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs 382 (390)
.+..++++|..+..+.......|..+|.
T Consensus 144 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~ 171 (438)
T TIGR00712 144 VHWWSQSERGTIVSIWNCAHNIGGGIPP 171 (438)
T ss_pred HHhcCcccchhHHHHHHHHHHhHhHHHH
Confidence 5556677888887776666666555544
No 132
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=82.82 E-value=7.6 Score=40.16 Aligned_cols=113 Identities=16% Similarity=0.018 Sum_probs=79.4
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhh
Q 016425 269 KDWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLT 347 (390)
Q Consensus 269 ~~w~~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~ 347 (390)
++|.....-.+|.+|..+|-.+.+... ...||.++..+. ++.+..=+.+.. -+|.+.++++-++-|+..+-..
T Consensus 116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~--~~~~i~~~~~a~----a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSL--LLFIIFGILTAF----APNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHH--HHHHHHHHHHHH----hCcHHHHHHHHHHHHhhccchh
Confidence 456666777899999999998864333 246777666655 222221122222 2344667888899999999999
Q ss_pred hhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 348 SVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 348 t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
+.+..+..+-+++++|..++.+..+....|...-...+++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~ 229 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYI 229 (521)
T ss_pred HHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999666666666665555554
No 133
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=82.81 E-value=62 Score=33.74 Aligned_cols=76 Identities=11% Similarity=-0.111 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhh
Q 016425 80 MLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGA 159 (390)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~l 159 (390)
.....+.++..-.+..|+..|.=+..+.+...+..++++.. + .+....++=++.|++.|..-+..--+
T Consensus 72 ~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-----~-------Sl~~L~i~R~llGvaEA~~~A~~syI 139 (511)
T TIGR00806 72 PYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-----T-------SVWHMQLMEVFYSVTMAARIAYSSYI 139 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----H-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445566666555555555555444444331 1 23334455566777777666333344
Q ss_pred cCCCCHHH
Q 016425 160 AGELPDRY 167 (390)
Q Consensus 160 a~~fp~~~ 167 (390)
+..+|++.
T Consensus 140 ~~WfP~kE 147 (511)
T TIGR00806 140 FSLVPPSR 147 (511)
T ss_pred HHHCCHHH
Confidence 55688754
No 134
>PRK09669 putative symporter YagG; Provisional
Probab=82.51 E-value=30 Score=34.87 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=45.6
Q ss_pred chhhhhcc-cCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhH
Q 016425 58 AVDYFSYL-YPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFT 136 (390)
Q Consensus 58 a~dyf~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~ 136 (390)
...||.+. ..+.+....+.....+..++...+..++.+|...+.....+.++.+++...+.. .. . ...+
T Consensus 251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~-----~~--~---~~~~ 320 (444)
T PRK09669 251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF-----IP--P---SNVW 320 (444)
T ss_pred hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-----hC--c---chHH
Confidence 33455433 223233333334455566666666666777776544444444333322221111 11 1 1123
Q ss_pred HHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425 137 VTVGAVALSGLADALVQGGLIGAAGE 162 (390)
Q Consensus 137 ~~l~~~~~~g~~~~~~q~s~~~la~~ 162 (390)
..++..++.|++.+..+....++.+.
T Consensus 321 ~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 321 LIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566777777777776666654
No 135
>PRK10091 MFS transport protein AraJ; Provisional
Probab=82.33 E-value=6.7 Score=38.63 Aligned_cols=103 Identities=15% Similarity=0.038 Sum_probs=57.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.....++++-.+|+....+.. ..++|+...... ++.....+++.. -++.+..++..++.|+..|-........
T Consensus 42 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~l~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 115 (382)
T PRK10091 42 HMISYYALGVVVGAPIIALFSSRYSLKHILLFLV--ALCVIGNAMFTL----SSSYLMLAIGRLVSGFPHGAFFGVGAIV 115 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH--HHHHHHHHHHHH----hCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 346678888888888766543 345555443332 222222222222 1234556677778898877665555555
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSI 383 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ 383 (390)
..+..++++|..+..+......+|..+|..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 145 (382)
T PRK10091 116 LSKIIKPGKVTAAVAGMVSGMTVANLLGIP 145 (382)
T ss_pred HHHhCChHHhhHHHHHHHHHHHHHHHHhcc
Confidence 555566666666655555555555555443
No 136
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=82.19 E-value=14 Score=37.90 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=18.8
Q ss_pred HHHHHHhhhhhhhhhchhhhhcCCCCHHHH
Q 016425 139 VGAVALSGLADALVQGGLIGAAGELPDRYM 168 (390)
Q Consensus 139 l~~~~~~g~~~~~~q~s~~~la~~fp~~~~ 168 (390)
.+..++.+++.+..++..+++...+++++.
T Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 381 (476)
T PLN00028 352 IVVMILFSIFVQAACGATFGIVPFVSRRSL 381 (476)
T ss_pred HHHHHHHHHHHHHhhhhhcccCcccChhhc
Confidence 334445566666667777777777666653
No 137
>PRK03633 putative MFS family transporter protein; Provisional
Probab=82.13 E-value=7.2 Score=38.36 Aligned_cols=107 Identities=12% Similarity=-0.005 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 273 GIILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 273 ~~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
.-.....+.++..+|.....+..- ..+|+.+.... ++.......+.. .++.+...+..++.|+..|-......
T Consensus 43 ~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~ 116 (381)
T PRK03633 43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLAS--LIFAAGCAGLGL----MVGFWSWLAWRFVAGIGCAMIWVVVE 116 (381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888877654332 33444333322 222222233222 23434555666777888776544333
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
....+..++++|..+-.......+.|..+|..++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 117 SALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223444566777776776677777777777665
No 138
>PRK11663 regulatory protein UhpC; Provisional
Probab=82.10 E-value=9.3 Score=38.47 Aligned_cols=105 Identities=14% Similarity=-0.038 Sum_probs=58.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.....+.++-.+++....+.. ..++|+...... ++.....+++.. .++.+...+.-++.|+..|-.......+
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~l~~~~~l~g~~~g~~~~~~~~~ 135 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL--IATGIINILFGF----SSSLWAFALLWVLNAFFQGWGWPVCAKL 135 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH--HHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 345567777777776655433 235555433332 222211112211 1222334445556677777554444555
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+..++++|..+..+......+|..+|..++
T Consensus 136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 167 (434)
T PRK11663 136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVV 167 (434)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778888888888777778877776543
No 139
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=82.01 E-value=4.5 Score=46.02 Aligned_cols=109 Identities=16% Similarity=0.061 Sum_probs=73.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHH-HHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIG-GCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~-lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 352 (390)
+...+|.++=.++....++.. ..++|++++ ..+++.++..+..++... ++.+..++..++.|+..|........
T Consensus 51 ~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~ 126 (1146)
T PRK08633 51 IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL----GWFWLAFAVTFLLGAQSAIYSPAKYG 126 (1146)
T ss_pred HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHHHhhchHHHh
Confidence 445567667666666554433 245565443 334555555444444321 23355667777889999988888888
Q ss_pred ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
+.++..++++|..+..+......+|..+|..++-.
T Consensus 127 ~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~ 161 (1146)
T PRK08633 127 IIPELVGKENLSRANGLLEAFTIVAILAGTALFSF 161 (1146)
T ss_pred hhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999888888888888777643
No 140
>PRK09669 putative symporter YagG; Provisional
Probab=81.71 E-value=61 Score=32.58 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=36.9
Q ss_pred hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHH-------HHhHHHHHHHHHHHHHHHHHHH
Q 016425 330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAE-------TAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke-------~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
+..++.+++.|+..|-...+.....++.++.+|.+ ..-.+.+++..+|..+|+.++-
T Consensus 320 ~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 320 WLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677889888877776666666666533321 2234666677888888876653
No 141
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=81.51 E-value=64 Score=32.66 Aligned_cols=72 Identities=26% Similarity=0.238 Sum_probs=43.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccC--chh--HHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhh
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLLEN--EKV--AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL 350 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~~~--~~~--l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~ 350 (390)
-+...+..|-++|-....+...++ +++ .+.+...=..|.-+. + .. +..+.+..-.-++++|+.||.+++-+
T Consensus 248 ~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii-~--a~--~~~~~~~~~~~~~l~G~g~G~f~vga 322 (403)
T PF03209_consen 248 RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII-L--AG--PLGSPWLFRPGVFLLGLGNGLFTVGA 322 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH-H--HH--hcccchHHHHHHHHHHHhhhHHHHHH
Confidence 346678889999888877655432 222 233333222222111 1 22 35567778889999999999987655
Q ss_pred e
Q 016425 351 M 351 (390)
Q Consensus 351 m 351 (390)
.
T Consensus 323 l 323 (403)
T PF03209_consen 323 L 323 (403)
T ss_pred H
Confidence 4
No 142
>PRK03545 putative arabinose transporter; Provisional
Probab=80.10 E-value=11 Score=37.18 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=44.1
Q ss_pred cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
+.+...+.-++.|+.+|...+....+.++..+++||..+-.+.......|..+|..++-
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~ 154 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR 154 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 44555666677898888777766666677778888988888888888888888776653
No 143
>PRK03699 putative transporter; Provisional
Probab=79.84 E-value=13 Score=36.74 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=50.1
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
....+.++-.+|.....+.. ..++|+...... .+.....+++... ++.+..++..++.|+..|...+.+....
T Consensus 47 ~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~--~~~~i~~~l~~~~----~~~~~~~~~~~l~G~~~g~~~~~~~~~i 120 (394)
T PRK03699 47 TFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF--ALMILAVAGLMFS----HSLALFSIAMFVLGVVSGITMSIGTFLI 120 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHc----chHHHHHHHHHHHHHhhHhhccchhHHh
Confidence 34566677777776654432 235555443332 2222222222211 2334455666788888887666555555
Q ss_pred CCcCChhhHHHHhHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLG 377 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~G 377 (390)
++..++++|..+..........|
T Consensus 121 ~~~~~~~~r~~~~~~~~~~~~~g 143 (394)
T PRK03699 121 THVYEGKQRGSRLLFTDSFFSMA 143 (394)
T ss_pred hhhcccchHHHHHHHHHHHHHHH
Confidence 66666666766554443333333
No 144
>PTZ00207 hypothetical protein; Provisional
Probab=79.61 E-value=19 Score=38.31 Aligned_cols=20 Identities=20% Similarity=0.115 Sum_probs=17.2
Q ss_pred HHHHHHhhhhhhhhhhhhhh
Q 016425 276 LIAGYNVFDLVGKSLTAIYL 295 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~ 295 (390)
.+.++.++.++||...+...
T Consensus 396 ~vsL~si~~~~GRl~~g~~~ 415 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFE 415 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHH
Confidence 46788999999999988776
No 145
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=79.31 E-value=8.9 Score=37.27 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=62.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
....++.++-.+|+....... ..++|+.+.... ++.....+.+.. .++.+..++..++.|+..|.........
T Consensus 30 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~--~~~~i~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 103 (377)
T PRK11102 30 MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGT--LVFALAAVACAL----AQTIDQLIYMRFLHGLAAAAASVVINAL 103 (377)
T ss_pred HHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHH--HHHHHHHHHHHH----HccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777778777765432 234455433222 222111111111 1233445666777888888776666666
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.++..++++|..+..+.......|..+|..++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 135 (377)
T PRK11102 104 MRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIG 135 (377)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888888887777777777777654
No 146
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=79.29 E-value=5.7 Score=40.00 Aligned_cols=100 Identities=24% Similarity=0.232 Sum_probs=66.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhc-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
++..|.++-.+|--+.....- .+||+++...+ .+|+--=++|...|+ .+...+-=++.|+++|-+-+.....+
T Consensus 53 lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l--~lFi~~n~l~alAp~----f~~Ll~aR~~~g~a~G~f~~i~~~~a 126 (394)
T COG2814 53 LITAYALGVALGAPLLALLTGRLERRRLLLGLL--ALFIVSNLLSALAPS----FAVLLLARALAGLAHGVFWSIAAALA 126 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH--HHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888777544433 46666554443 333322223333333 24445566688999999999999999
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAG 381 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~G 381 (390)
.+.++|++|..|-.++...+++.+.+|
T Consensus 127 ~~lvpp~~~~~Aiaiv~~G~tlA~v~G 153 (394)
T COG2814 127 ARLVPPGKRGRALALVFTGLTLATVLG 153 (394)
T ss_pred HHHcCccchhhHHHHHHHHHHHHHHHh
Confidence 999999999888777765555444443
No 147
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=79.29 E-value=34 Score=34.45 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhh
Q 016425 79 YMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIG 158 (390)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~ 158 (390)
..+..+.......++.+|+..+.-+..+.+..++=..+... .. ++ ......+.+....+-|..-+..-.+...
T Consensus 252 ~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~-----~~-~~-~~~~~~~~~l~q~lhG~tf~~~~~a~~~ 324 (400)
T PF03825_consen 252 GVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY-----FS-DP-WPFIVALQLLGQLLHGLTFGLFHAASVR 324 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-----hc-CC-cHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35567777777788888888776666666655544443322 11 11 1111122222234567666666666666
Q ss_pred hcC-CCCHHH---HHHHH
Q 016425 159 AAG-ELPDRY---MQALV 172 (390)
Q Consensus 159 la~-~fp~~~---~~a~~ 172 (390)
+.. ..|++. .|++.
T Consensus 325 yi~~~~p~~~~at~Q~l~ 342 (400)
T PF03825_consen 325 YIDRIAPPELRATAQGLY 342 (400)
T ss_pred HHHHhCCccchHHHHHHH
Confidence 555 467665 35554
No 148
>PRK15011 sugar efflux transporter B; Provisional
Probab=79.21 E-value=49 Score=32.65 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcCCCCcc
Q 016425 81 LVGLFCLVIIVFYAHKSDAW 100 (390)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~ 100 (390)
...++...+.-++.+|+..+
T Consensus 263 ~~~i~~~~~~G~l~dr~g~~ 282 (393)
T PRK15011 263 GLEIPTMLIAGYFAKRLGKR 282 (393)
T ss_pred HHHHHHHHHHHHHHHHhChH
Confidence 33444445555566666554
No 149
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=78.92 E-value=14 Score=36.25 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=54.8
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
....+.++..++........ ..++|+.+.... +......+.+... ++.+..++..++.|+..|..........
T Consensus 48 ~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 121 (394)
T PRK11652 48 VMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGM--SIFILGTLVALFA----HSLTVLIAASAIQGLGTGVGGVMARTLP 121 (394)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH--HHHHHHHHHHHHH----ccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34566666666665544322 234555433322 2222222222221 2334455666777888877666655555
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
++..+++++..+..........|..+|..++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 152 (394)
T PRK11652 122 RDLYEGTQLRHANSLLNMGILVSPLLAPLIG 152 (394)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666776666666666666655554443
No 150
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=78.64 E-value=14 Score=37.46 Aligned_cols=102 Identities=13% Similarity=-0.063 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
....++.++..+|.....+.. ..++|++.+... +++....+.+...+..-.+.+..++..++.|+..|.........
T Consensus 67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~ 144 (452)
T PRK11273 67 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 144 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHH--HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHH
Confidence 335566677777666654432 234555443332 22222212111111011233344555667788776554333333
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGL 378 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl 378 (390)
..+..++++|..+..+.......|.
T Consensus 145 ~~~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 145 MVHWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhhh
Confidence 3444566778777776666655554
No 151
>PRK09528 lacY galactoside permease; Reviewed
Probab=78.43 E-value=17 Score=36.27 Aligned_cols=77 Identities=8% Similarity=0.051 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhh
Q 016425 79 YMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIG 158 (390)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~ 158 (390)
..+...+.....-++.+|.+.+..+..+..+..+.+..... .+ + .+. .....++.|...+......+.
T Consensus 271 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~-----~~-~-----~~~-~~~~~~l~g~~~~~~~~~~~~ 338 (420)
T PRK09528 271 QVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF-----AT-G-----PLE-VSILKLLHAFEVPFLLVGVFK 338 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh-----cc-c-----HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667778887665555555555444443322 11 1 111 223344455566665555555
Q ss_pred hcC-CCCHHH
Q 016425 159 AAG-ELPDRY 167 (390)
Q Consensus 159 la~-~fp~~~ 167 (390)
+.. .+|++.
T Consensus 339 ~~~~~~~~~~ 348 (420)
T PRK09528 339 YITLNFDVRL 348 (420)
T ss_pred HHHHHcCccc
Confidence 543 456654
No 152
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=78.35 E-value=11 Score=37.08 Aligned_cols=106 Identities=11% Similarity=-0.016 Sum_probs=60.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
....++.++..++.....+.. ..++|+.+.... +++......+... ++.+..++..++.|+..|........+
T Consensus 42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~--~~~~i~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~~~~~ 115 (392)
T PRK10473 42 IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGA--ALFIIASLLCSLA----ETSSLFLAGRFLQGIGAGCCYVVAFAI 115 (392)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHH--HHHHHHHHHHHHh----CcHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445667777777766554433 234444333221 2222222222211 222344556677888888777777777
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
.++..++++|..+..+.......|..+|..++.
T Consensus 116 i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~ 148 (392)
T PRK10473 116 LRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH 148 (392)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888766666666666666655543
No 153
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=78.19 E-value=11 Score=38.22 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=68.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccC--------CcccccchhHHHHHHHHhhhchh
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHG--------PKFFRTEIPVTLLTCLLGLTNGY 345 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~--------p~~~~~d~~~~il~~lfgltnGy 345 (390)
....+|++|=.+|-.+..+.. ...||+.+.... +++....+.+... +.-..+....++.=++.|+..|-
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~--~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~ 136 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAA--VLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGL 136 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhH
Confidence 456778888888777765433 245666544443 2222222222110 00011112233445677999999
Q ss_pred hhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 346 LTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 346 ~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
....++.+..+..++++|..+..+.......|..++.+++.
T Consensus 137 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~ 177 (479)
T PRK10077 137 ASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNY 177 (479)
T ss_pred HhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99989888888889999999999988888888887766543
No 154
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=77.55 E-value=9 Score=36.71 Aligned_cols=41 Identities=7% Similarity=-0.028 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHH
Q 016425 76 AVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLV 116 (390)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~ 116 (390)
...+.+..++......++.+|...+.-+..+..+..+..+.
T Consensus 246 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 286 (377)
T TIGR00890 246 VSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAA 286 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 34555666666777777777776554445555555554443
No 155
>PRK10504 putative transporter; Provisional
Probab=77.51 E-value=15 Score=37.13 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=40.6
Q ss_pred cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+.+..++..++.|+..|...........+..++++|..+-.+....-..|..+|..++
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3345567778889998887777776667777777777776666666666666665554
No 156
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=76.99 E-value=6.8 Score=37.80 Aligned_cols=29 Identities=14% Similarity=0.004 Sum_probs=16.7
Q ss_pred HHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425 139 VGAVALSGLADALVQGGLIGAAG-ELPDRY 167 (390)
Q Consensus 139 l~~~~~~g~~~~~~q~s~~~la~-~fp~~~ 167 (390)
+....+.|++.+..++...++.. .+|++.
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 345 (394)
T TIGR00883 316 FFLVLGLALIGGMYTGPMGSFLPELFPTEV 345 (394)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCccc
Confidence 34445566666666666665554 567653
No 157
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=76.84 E-value=56 Score=33.18 Aligned_cols=29 Identities=17% Similarity=-0.048 Sum_probs=17.4
Q ss_pred HHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425 139 VGAVALSGLADALVQGGLIGAAG-ELPDRY 167 (390)
Q Consensus 139 l~~~~~~g~~~~~~q~s~~~la~-~fp~~~ 167 (390)
.+..++.|++.+......+++.. ..|++.
T Consensus 337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~ 366 (455)
T TIGR00892 337 VIYCIFFGLSFGSVGALLFEVLMDLVGAQR 366 (455)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhHHH
Confidence 34455667777666666666655 456644
No 158
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=76.70 E-value=98 Score=32.04 Aligned_cols=80 Identities=14% Similarity=0.225 Sum_probs=50.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhh
Q 016425 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQ 153 (390)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q 153 (390)
.++.++++...++.-+.-++..|.+.+.-+..|..++.++.+....+ ..|+..+++-.+.|++-|...
T Consensus 72 ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs------------~~Fwq~~l~R~~vGiGeAs~~ 139 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS------------NHFWQVLLCRGFVGIGEASYS 139 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhccchhhhc
Confidence 44445555555555556667788887777888888888777654332 146666777777777766665
Q ss_pred chhhhhcC-CCCH
Q 016425 154 GGLIGAAG-ELPD 165 (390)
Q Consensus 154 ~s~~~la~-~fp~ 165 (390)
...=++.+ .||.
T Consensus 140 ~ia~s~IaD~f~~ 152 (493)
T KOG1330|consen 140 PIAPSLIADSFPD 152 (493)
T ss_pred ccchhHhhhcCcc
Confidence 55555555 3553
No 159
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=76.47 E-value=25 Score=35.24 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 332 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 332 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.++.=++.|+..|-....+..+..+..++++|..+..+.......|..+|..+.
T Consensus 127 l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~ 180 (432)
T PRK10406 127 LLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV 180 (432)
T ss_pred HHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 445556789998877777777777777888888887777777778877777653
No 160
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=76.35 E-value=17 Score=37.43 Aligned_cols=107 Identities=12% Similarity=-0.090 Sum_probs=56.0
Q ss_pred HHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecC
Q 016425 277 IAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAP 355 (390)
Q Consensus 277 ~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p 355 (390)
..++.++=-++|....+.. ...+|+....+.+ +..+|.+......+...++-+..+++-++.|+..+ .....+....
T Consensus 76 ~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l-l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~-~f~~~~~~vs 153 (462)
T PRK15034 76 TALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA-ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGA-NFASSMGNIS 153 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH-HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence 4455555556666654322 2344554333321 23455554432111122444556677778888744 3344555555
Q ss_pred CcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 356 KVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 356 ~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+--+++||..+-.+..-.-++|..++..+.
T Consensus 154 ~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 154 FFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 556777888877666545555665554443
No 161
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=76.07 E-value=24 Score=34.85 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=50.6
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
....|.++-.++........ ..++|+.+.... .+.....+.+... ++.+..++..++.|+..|..........
T Consensus 53 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~i 126 (406)
T PRK15402 53 SMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV--AFFILTCLAILLA----QSIEQFTLLRFLQGIGLCFIGAVGYAAI 126 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH--HHHHHHHHHHHHH----ccHHHHHHHHHHHHhHhhhHHHHHHHHH
Confidence 35567777777666554322 234555433322 2222221211111 2334445566677888776655555555
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIV 384 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~l 384 (390)
.+..++++|..+..++......|..+|..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 156 (406)
T PRK15402 127 QESFEEADAIKITALMANVALLAPLLGPLV 156 (406)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666554444443334444555443
No 162
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=75.55 E-value=5 Score=38.56 Aligned_cols=101 Identities=12% Similarity=-0.087 Sum_probs=63.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhhc-cCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYLL-ENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~~-~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 352 (390)
.+...+.++..++.....+..- .++|++.... ++-.+..-++.. .++.+..++..++.|+..|........
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 106 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF-------STSLWVMAALWALNGIFQGMGWPPCGR 106 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHhhccccCCchHH
Confidence 4466778888888777654432 3455543322 222222111111 123355566777889888887777777
Q ss_pred ecCCcCChhhHHHHhHHHHHHHHHHHHHHH
Q 016425 353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGS 382 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs 382 (390)
+.++..++++|..+..+...+...|..+|.
T Consensus 107 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 107 TVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred HHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence 778888888888877777777777777776
No 163
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=75.44 E-value=1e+02 Score=31.68 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 332 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 332 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
..++..+-.+..+....+...++.+-.+...|..+...++..-.+|..++..+..
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~ 463 (521)
T KOG0255|consen 409 HWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPL 463 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555556666778888888888999988888888888777776653
No 164
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=75.36 E-value=5 Score=40.91 Aligned_cols=56 Identities=14% Similarity=-0.113 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+..++.-++.|+.+|......+.+..+..+++||..+..+......+|..+|..++
T Consensus 123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~ 178 (467)
T PRK09556 123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA 178 (467)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence 44555666778887766666666667777778888777776666677777766554
No 165
>PRK12307 putative sialic acid transporter; Provisional
Probab=75.17 E-value=12 Score=37.10 Aligned_cols=105 Identities=11% Similarity=-0.067 Sum_probs=62.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
....++.++-.+|.....+.. ..++|+.+.... ++.....+.+.. .++.+..++.-++.|+..|-..+....+
T Consensus 57 ~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~--~~~~~~~~~~~~----~~~~~~l~~~r~l~G~g~g~~~~~~~~~ 130 (426)
T PRK12307 57 FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI--VAYSVGTGLSGL----ASGVIMLTLSRFIVGMGMAGEYACASTY 130 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH--HHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445567777777666554433 235555443332 222221111111 1233455666677888877666666666
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
..+..++++|..+..+......+|..+|..+.
T Consensus 131 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~ 162 (426)
T PRK12307 131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFM 162 (426)
T ss_pred HHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHH
Confidence 67777888888888887777777877776543
No 166
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=73.60 E-value=15 Score=37.21 Aligned_cols=107 Identities=10% Similarity=-0.030 Sum_probs=66.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.+...|.++-.+|.....+.. ..++|+.+....+=....++....... .+.+..++.-++.|+..|........+
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~~~G~~~~~~~~~~~~~ 155 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG----GGIALVVFCRVIQGLAQGSVSPATHKI 155 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH----cCchHHHHHHHHHHHhcccchhhHHHH
Confidence 345566677777766654432 234444333222111112221111111 122445666778899999888888888
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.++..+++||..+..+......+|..+|..++
T Consensus 156 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~ 187 (465)
T TIGR00894 156 IVKWAPPKERSRLLGMSTSGFQLGTFIFLPIS 187 (465)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89989999999999998888888888887665
No 167
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=73.15 E-value=20 Score=35.52 Aligned_cols=108 Identities=9% Similarity=0.029 Sum_probs=56.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 352 (390)
.....|.++..++........ ..++|+.+... +.-.+..-++..-... ..+.+...+.-++.|+..|-.......
T Consensus 52 ~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~i~G~g~~~~~~~~~~ 128 (402)
T TIGR00897 52 SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG---HANYPLILLFYGIRGLGYPLFAYSFLV 128 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc---CccHHHHHHHHHHHHcchHHHHhHHHH
Confidence 345677788888777765433 24455543322 2222211111110110 012233344555567665544444444
Q ss_pred ecCCcCChhhHHHHhHHHHHHHHHHH-HHHHHHH
Q 016425 353 LAPKVVQLQHAETAGIVIVLFLVLGL-AAGSIVA 385 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~~~~~l~~Gl-~~Gs~ls 385 (390)
..++..+++||..+..+.......|. .+|..++
T Consensus 129 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~ 162 (402)
T TIGR00897 129 WVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS 162 (402)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788899998888877777776 4565543
No 168
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=72.13 E-value=0.8 Score=46.16 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 273 GIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 273 ~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
.-.....+.+|-.+|-.+..+.. ...||+.+..+. ++.+.--+++...|.. .+.+...+.-++.|+..|-..+...
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~--~~~~i~~~~~~~~~~~-~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA--LLMIIGSILIAFAPSY-NNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccc--cccccccccccccccc-ccccccccccccccccccccccccc
Confidence 34557788899999998876443 345666544333 1111111111111211 2455566777888999999999999
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
++..|..+++.|...+.+...+..+|..+|+.++..
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~ 160 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYI 160 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999998877654
No 169
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=71.70 E-value=16 Score=41.88 Aligned_cols=86 Identities=12% Similarity=0.119 Sum_probs=62.3
Q ss_pred CchhHH-HHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHH
Q 016425 298 NEKVAI-GGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVL 376 (390)
Q Consensus 298 ~~~~l~-~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~ 376 (390)
++|++. .+..+++++..+.+.+.. .++.+..++..++.|+.++..........|+.++++++..+..++..+..+
T Consensus 80 ~rk~~~~~~~~~~~~~~~~~~~~~~----~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~i 155 (1140)
T PRK06814 80 DKAKLAKILKFAEIGIAALAIYGFH----LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFI 155 (1140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHH
Confidence 445532 333445554444333332 234566778888899999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 016425 377 GLAAGSIVAWF 387 (390)
Q Consensus 377 Gl~~Gs~ls~~ 387 (390)
|..+|..++=+
T Consensus 156 g~~igp~l~g~ 166 (1140)
T PRK06814 156 AILLGTIIGGL 166 (1140)
T ss_pred HHHHHHHHHHH
Confidence 99988877644
No 170
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=71.36 E-value=16 Score=36.33 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=43.7
Q ss_pred HHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 333 TLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 333 ~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
++.-++.|+..|......+.+.|+.++++||..+-.++......|..+|..++
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lg 144 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLG 144 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446779999999999999999999999999998888888888877776665
No 171
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=71.03 E-value=75 Score=31.87 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchh
Q 016425 77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL 156 (390)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~ 156 (390)
...++...+......++.+|++.+.-+..+.++..+.+..... .. . ....++...+..++.|++.+......
T Consensus 258 ~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~-----~~--~-~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 258 SLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY-----GD--P-EYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-----cC--c-chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666667778877665566666655555433222 11 0 11122333445666777777776666
Q ss_pred hhhc-CCCCHHH
Q 016425 157 IGAA-GELPDRY 167 (390)
Q Consensus 157 ~~la-~~fp~~~ 167 (390)
..+. -.+|++.
T Consensus 330 ~~~i~~~~p~~~ 341 (418)
T TIGR00889 330 SVFVEKEVPVHI 341 (418)
T ss_pred HHHHHHHCCHHH
Confidence 6654 4678764
No 172
>TIGR00901 2A0125 AmpG-related permease.
Probab=70.28 E-value=25 Score=33.89 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=40.7
Q ss_pred hHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 331 PVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 331 ~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
....+.++.++..+........+.++..++++|..+..+...+..+|..+|+.++..
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 141 (356)
T TIGR00901 85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALV 141 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555554444445566888888999999999999999999999888753
No 173
>PRK15075 citrate-proton symporter; Provisional
Probab=69.33 E-value=50 Score=33.12 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=37.0
Q ss_pred HHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 333 TLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 333 ~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
++.-++.|+..|........+..+..++++|..+..+.......|..+|..++.
T Consensus 121 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 121 LLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred HHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567788877666655667778888889988887776666666655555443
No 174
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.68 E-value=70 Score=34.98 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=41.0
Q ss_pred HHHHhhhhhhHHHHhhcchhhhhcccCCCc-cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHH
Q 016425 41 YFTLGLGFLLPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL 115 (390)
Q Consensus 41 f~llGi~~L~pwn~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~ 115 (390)
.+..|+.. --.|..+|-. ++||+=++ -.-.+.-.|-+.+++..+...+++.|.+...-|-.|.+++.+.-+
T Consensus 106 ~~~q~l~~-~y~~s~Itti---ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 106 AFAQGLYV-GYFNSVITTI---ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHhhh-hhhhhhhhhh---hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 34445544 3345555555 55554222 233455567777888888888888775543334477777765544
No 175
>PRK03893 putative sialic acid transporter; Provisional
Probab=67.53 E-value=22 Score=36.08 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=59.2
Q ss_pred HHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeec
Q 016425 276 LIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILA 354 (390)
Q Consensus 276 ~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~ 354 (390)
....+.++-.+|.....+.. ..++|+.+.... ++.....+.+... ++.+..++..++.|+..|-.......+.
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~ 133 (496)
T PRK03893 60 LISAAFISRWFGGLLLGAMGDRYGRRLAMVISI--VLFSVGTLACGFA----PGYWTLFIARLVIGMGMAGEYGSSATYV 133 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777665554332 234555433322 2222222211111 2334556667778888776655555556
Q ss_pred CCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 355 PKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 355 p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.+..++++|..+..+......+|..+|..++
T Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 134 IESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888877777777777777776654
No 176
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=67.47 E-value=80 Score=32.07 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=51.3
Q ss_pred hhhhhcccCCCccch-hhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHH
Q 016425 59 VDYFSYLYPEASVDR-IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTV 137 (390)
Q Consensus 59 ~dyf~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~ 137 (390)
..|++++|..++.+. .++...-++..+..-+-=.+..|+.-+.-....++.++++..+.... .+..+....++.
T Consensus 242 ~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~-----~~~~~~~~~~~~ 316 (417)
T COG2223 242 PMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLF-----LTGFGHGGSFVV 316 (417)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcc-----ccccccCcchHH
Confidence 378899998766553 33323233333322222234455554333335555655555543221 111111123344
Q ss_pred HHHHHHHhhhhhhhhhchhhhhcCC
Q 016425 138 TVGAVALSGLADALVQGGLIGAAGE 162 (390)
Q Consensus 138 ~l~~~~~~g~~~~~~q~s~~~la~~ 162 (390)
........+++.|+.++++|.+...
T Consensus 317 ~~~~~l~l~~~~G~GnGsvfk~Ip~ 341 (417)
T COG2223 317 FVAVFLALFVFAGLGNGSVFKMIPV 341 (417)
T ss_pred HHHHHHHHHHHhccCcchheeechH
Confidence 4555666788888888999987764
No 177
>PRK10133 L-fucose transporter; Provisional
Probab=67.12 E-value=65 Score=32.61 Aligned_cols=76 Identities=9% Similarity=0.011 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchh
Q 016425 77 VAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGL 156 (390)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~ 156 (390)
..+.....+.....-++.+|+..+..+..+..+.++.+.+.. ..+ +. ..+....+.|++.+......
T Consensus 302 ~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-----~~~---~~-----~~~~~~~l~glg~~~i~P~~ 368 (438)
T PRK10133 302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-----FAG---GH-----VGLIALTLCSAFMSIQYPTI 368 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-----HcC---Ch-----HHHHHHHHHHHHHHHHHHHH
Confidence 455556666667677777776654434444333333322211 111 11 12345667899999999999
Q ss_pred hhhcCC-CCH
Q 016425 157 IGAAGE-LPD 165 (390)
Q Consensus 157 ~~la~~-fp~ 165 (390)
++.+.. +|+
T Consensus 369 ~s~a~~~~~~ 378 (438)
T PRK10133 369 FSLGIKNLGQ 378 (438)
T ss_pred HHHHHcccch
Confidence 998887 544
No 178
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=66.75 E-value=1e+02 Score=32.17 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHH--HHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhch
Q 016425 78 AYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVA--LLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGG 155 (390)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~--~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s 155 (390)
.....+.+..++.-.+..+-+.+.+....+.+.+.. .+..|.. ..|+..+...++.|++.|...+-
T Consensus 341 iigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~------------~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 341 IIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA------------TTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred HHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 557778888888888777767556655444443333 3233331 12344445555666666655544
Q ss_pred h
Q 016425 156 L 156 (390)
Q Consensus 156 ~ 156 (390)
.
T Consensus 409 ~ 409 (509)
T KOG2504|consen 409 T 409 (509)
T ss_pred H
Confidence 3
No 179
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=65.22 E-value=46 Score=34.15 Aligned_cols=84 Identities=15% Similarity=-0.052 Sum_probs=52.2
Q ss_pred cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcC-ChhhHHHHhHHHHHHHH
Q 016425 297 ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVV-QLQHAETAGIVIVLFLV 375 (390)
Q Consensus 297 ~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v-~~~eke~ag~~~~~~l~ 375 (390)
.++|+++.... +++....+.|... ++.+..++.-++.|+.+|......+...++.. ++++|..+-.++.....
T Consensus 68 ~Grk~~l~~~~--~~~~~~~~~~~~a----~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~ 141 (495)
T PRK14995 68 IGFKRLLMLGG--TLFGLASLAAAFS----PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGS 141 (495)
T ss_pred hccHHHHHHHH--HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 35566544433 4444444444432 34345555667788888776665554444443 56788888888888888
Q ss_pred HHHHHHHHHHH
Q 016425 376 LGLAAGSIVAW 386 (390)
Q Consensus 376 ~Gl~~Gs~ls~ 386 (390)
+|..+|..++-
T Consensus 142 ~g~~~gp~lgg 152 (495)
T PRK14995 142 GGAAFGPLVGG 152 (495)
T ss_pred HHHHHHHHHHH
Confidence 88888877653
No 180
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=64.97 E-value=30 Score=34.73 Aligned_cols=60 Identities=15% Similarity=-0.005 Sum_probs=44.2
Q ss_pred cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
+.+...+..++.|+..|.+.+....+..+..++++++..-++......+|..+|..++-.
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~ 152 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQ 152 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667788999998887766666666677778888888888888888888776543
No 181
>PRK11043 putative transporter; Provisional
Probab=63.91 E-value=58 Score=31.98 Aligned_cols=133 Identities=14% Similarity=0.016 Sum_probs=57.4
Q ss_pred HHHHhhhhceeccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccC
Q 016425 244 ILLIYIVTLSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHG 322 (390)
Q Consensus 244 ~~l~f~vTl~vFPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~ 322 (390)
.++.++.+-...|.+ +...++...++...-....++.++-.+|.....+.. ..++|++..... ++.....+.+...
T Consensus 15 ~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~~~~ 91 (401)
T PRK11043 15 SMLGFLATDMYLPAF-KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGL--SLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHH--HHHHHHHHHHHHh
Confidence 344555555555654 211111111222223345567777777776654433 234555433322 1222111122111
Q ss_pred CcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHH
Q 016425 323 PKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSI 383 (390)
Q Consensus 323 p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ 383 (390)
++.+..++..++.|+..|...........+..+++++..+-.........|..+|..
T Consensus 92 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 148 (401)
T PRK11043 92 ----ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPL 148 (401)
T ss_pred ----cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444555667777665544443334455555555444333333333344444443
No 182
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=63.26 E-value=25 Score=34.79 Aligned_cols=55 Identities=16% Similarity=0.136 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 332 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 332 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
..++.++.++.+.......-.+.++..+++||..++.+.......|..+|+.++.
T Consensus 97 l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~ 151 (402)
T PRK11902 97 LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL 151 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444455565555554555566788888889999999988888888888877554
No 183
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=62.97 E-value=61 Score=34.23 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=75.5
Q ss_pred hhHHHHHHhhhhhhHHHHhhcchhhhhccc-CCCc-cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHH
Q 016425 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYLY-PEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVAL 114 (390)
Q Consensus 37 ~y~~f~llGi~~L~pwn~~ita~dyf~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~ 114 (390)
..+.-+++|.+..+-||+. ||.-+= .+.+ ..-...+..-...+..-..-.++.+|+.|.--+..++..+.+=+
T Consensus 376 ff~~av~mG~g~~lv~tFL-----fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf 450 (618)
T KOG3762|consen 376 FFFVAVVMGAGVGLVFTFL-----FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRF 450 (618)
T ss_pred hhHHHHHHHHHHHHHHHHH-----HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHH
Confidence 3455678999999999998 776432 2111 12222222222333334444467788887666668888877766
Q ss_pred HHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHH---HHHHh
Q 016425 115 LVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYM---QALVA 173 (390)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~~---~a~~~ 173 (390)
+.... .+ .-|.++.+=++.|+..+..=.++.++++. .||+.. |+++-
T Consensus 451 ~~~S~-----L~-------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~ 501 (618)
T KOG3762|consen 451 LYYSY-----LQ-------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQ 501 (618)
T ss_pred HHHHH-----hc-------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHH
Confidence 64322 22 23667888889999999999999988885 676543 55543
No 184
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=61.91 E-value=1.9e+02 Score=29.53 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=34.1
Q ss_pred hHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 331 PVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 331 ~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+.....++-++..|....-.+.+..+.++++++...-.+.....++|-.+|+.++
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 4455666778887777666666666666666555444444444466666666544
No 185
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=61.69 E-value=72 Score=27.72 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=60.1
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhh
Q 016425 269 KDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTS 348 (390)
Q Consensus 269 ~~w~~~~~~~~FnvgD~iGR~~~~~~~~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t 348 (390)
+.....++...|.++-+++-.+ ...-.+|+..++.. +..+++..++..| +.+..++--.+.|+..+-+-+
T Consensus 39 G~~slai~Y~~~~~s~l~~P~i---v~~lg~K~sm~lg~---~~y~~y~~~~~~~----~~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSI---VNKLGPKWSMILGS---LGYAIYIASFFYP----NSYTLYPASALLGFGAALLWT 108 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHH---HHHHhhHHHHHHHH---HHHHHHHHHHHhh----hHHHHHHHHHHHhhhhHHhhH
Confidence 4556667778888888775443 33345566544433 3344555555433 335566666778887765554
Q ss_pred hheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 349 VLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 349 ~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
---.+-.+..++++|+.--.+---....+...|.+..++
T Consensus 109 aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 109 AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222333344555544333333344577788777665
No 186
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=61.49 E-value=34 Score=35.07 Aligned_cols=107 Identities=9% Similarity=-0.038 Sum_probs=63.2
Q ss_pred HHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccc-cch---hHHHHHHHHhhhchhhhhhhee
Q 016425 278 AGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFR-TEI---PVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 278 ~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~-~d~---~~~il~~lfgltnGy~~t~~mi 352 (390)
.++.+|-.+|-...++.. ...+|+.+..+. +++....++|...|.+-. ..+ ..++.=++.|+..|-..+.+..
T Consensus 64 ~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~--~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~ 141 (490)
T PRK10642 64 SVPFLIRPLGGLFFGMLGDKYGRQKILAITI--VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASI 141 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHH--HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHH
Confidence 444455555555443322 245666655555 444333333333232200 011 1344556778888877777777
Q ss_pred ecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 353 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
+..+..++++|..++.+.......|..+|+.++.
T Consensus 142 ~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~ 175 (490)
T PRK10642 142 FVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV 175 (490)
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888888888888876553
No 187
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.86 E-value=2.1e+02 Score=29.61 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHHHHH
Q 016425 134 GFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYMQAL 171 (390)
Q Consensus 134 ~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~~~a~ 171 (390)
.+.+.+++..+.|++++..|+..+...+. +|++-.|+.
T Consensus 352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~f 390 (461)
T KOG3098|consen 352 SYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAF 390 (461)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 36788999999999999999999988774 555555544
No 188
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=60.28 E-value=37 Score=34.92 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=31.8
Q ss_pred hhhhhchhhhhcCCCCHHHHHHHHh-hhHHH---HHHHHHHHHHHHHHHHhccchhHHhhhhhhhhhhhhhhhc
Q 016425 149 DALVQGGLIGAAGELPDRYMQALVA-GTAGS---VGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEK 218 (390)
Q Consensus 149 ~~~~q~s~~~la~~fp~~~~~a~~~-G~~~s---ia~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~e~~e~~ 218 (390)
.|+..-..+.+---.|+ ..+++.+ |.... ..++.++++.+.|+ |+.|-|.+..++.++||+|||
T Consensus 378 ~G~vp~~~~~vpwttP~-~l~~fl~t~g~~~~~ilq~v~lvi~~lIY~-----PFvK~~dk~~~~~~~~~~~~~ 445 (452)
T PRK10297 378 LGIIPPITNIAPWTMPT-GLGAFFNTNGSVAALLVALFNLGIATLIYL-----PFVVVANKAQNAIDKEESEED 445 (452)
T ss_pred cCCCCcccccCCCCCcH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhcHHH
Confidence 34444344444444555 4466653 33332 44444555555554 888877665544333433443
No 189
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=59.55 E-value=1.2e+02 Score=28.78 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhc--cCchhHHHHH-HHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhh
Q 016425 271 WYGIILIAGYNVFDLVGKSLTAIYLL--ENEKVAIGGC-FARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLT 347 (390)
Q Consensus 271 w~~~~~~~~FnvgD~iGR~~~~~~~~--~~~~~l~~ls-l~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~ 347 (390)
|.-.+..-+|..|=++|-..-+.+.. .+||+..... .+-.++..+-.+|.+. .=.+...-...+.++|+-.|.+.
T Consensus 141 ~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~--~g~~~~~~~~~f~I~~Fl~G~f~ 218 (267)
T PF07672_consen 141 WIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYF--VGPGNAAGFAFFYIFGFLAGFFL 218 (267)
T ss_pred hhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHHHHH
Confidence 43334445677788888665444333 2444433222 1223444444444421 00111222333555666555443
Q ss_pred ---hhheeecCCcCChhhHHHHhHHHHHHHHHHHH
Q 016425 348 ---SVLMILAPKVVQLQHAETAGIVIVLFLVLGLA 379 (390)
Q Consensus 348 ---t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~ 379 (390)
--.+-+=|..-++.+.+..|.+-++.=-+|=+
T Consensus 219 WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~ 253 (267)
T PF07672_consen 219 WGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYI 253 (267)
T ss_pred HhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHH
Confidence 11122335555555566677666665555543
No 190
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=59.36 E-value=1.5e+02 Score=30.58 Aligned_cols=82 Identities=10% Similarity=0.064 Sum_probs=54.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhh
Q 016425 73 RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALV 152 (390)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~ 152 (390)
+++...+.+.+.+..++.-++..++..|.-+..+.+++++.-++..... .+...+++=++.|++.|..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~------------~~~~l~~GR~l~G~g~G~~ 159 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP------------SWYQLIVGRILTGLGVGGA 159 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHhccchhhh
Confidence 5777788888888888888888888877778888877777666543320 1233445566677777777
Q ss_pred hchhhhhcCCCCHH
Q 016425 153 QGGLIGAAGELPDR 166 (390)
Q Consensus 153 q~s~~~la~~fp~~ 166 (390)
+...--+.+...|+
T Consensus 160 ~~~~piy~sEiap~ 173 (513)
T KOG0254|consen 160 SVLAPVYISEIAPA 173 (513)
T ss_pred hhcchhhHhhcCCh
Confidence 75555555554444
No 191
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=58.00 E-value=2.3e+02 Score=29.25 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhc-cCch--hHHHHHHHHHHHHhhhhhc-c-cCCcccccchhHHHHHHHHhhhchhhh
Q 016425 273 GIILIAGYNVFDLVGKSLTAIYLL-ENEK--VAIGGCFARLLFFPLFLGC-L-HGPKFFRTEIPVTLLTCLLGLTNGYLT 347 (390)
Q Consensus 273 ~~~~~~~FnvgD~iGR~~~~~~~~-~~~~--~l~~lsl~R~ifiplf~~~-~-~~p~~~~~d~~~~il~~lfgltnGy~~ 347 (390)
..+..++=|+.-.+|-.+..+... .++| +.+..++.=...+|+.-+. . ..+--+++.+-++++-++.|+..|-..
T Consensus 319 l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~q 398 (477)
T PF11700_consen 319 LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQ 398 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHH
Confidence 344556667777777777655443 2333 5544444334445544332 0 111115677788899999999999888
Q ss_pred hhheeecCCcCChhhHHHHhHHHHHHHHHHHH
Q 016425 348 SVLMILAPKVVQLQHAETAGIVIVLFLVLGLA 379 (390)
Q Consensus 348 t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~ 379 (390)
+.+=.+-.+-.|+ +|| +.+.+++-..|-.
T Consensus 399 s~sRs~~~~LiP~-g~e--~efFgly~i~gk~ 427 (477)
T PF11700_consen 399 SASRSLFSRLIPP-GRE--AEFFGLYAITGKA 427 (477)
T ss_pred HHHHHHHHHhCCC-chh--hHHHHHHHHHHHH
Confidence 7776555555443 444 5555555555543
No 192
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=57.41 E-value=55 Score=33.88 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=49.6
Q ss_pred HHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCC-CHHH
Q 016425 91 VFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGEL-PDRY 167 (390)
Q Consensus 91 ~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~f-p~~~ 167 (390)
.+..+|.+...|+..|+++..+++++++.... +.+ +.+.. ..+......++.|++..+.....++++... |++.
T Consensus 341 ~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~-~~~-~~~~v-s~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~ 415 (500)
T PRK09584 341 NKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAK-FAN-DAGIV-SVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL 415 (500)
T ss_pred HHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHH-hcC-CCCcc-CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH
Confidence 44566777888999999999999887665422 111 12222 223455667788999999999999888754 5544
No 193
>PRK09952 shikimate transporter; Provisional
Probab=57.32 E-value=42 Score=33.85 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 332 VTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 332 ~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.++.-++.|+..|-....+..+..+..++++|............+|..+|+.+.
T Consensus 128 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~ 181 (438)
T PRK09952 128 LVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV 181 (438)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334456779988877666667777777888888877777777788887776543
No 194
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=56.96 E-value=61 Score=33.79 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=40.1
Q ss_pred HHHHHHhhhhhhHHHHhhcchhhhhcccCCCc--cchhhhhhHHHHHHHHHHHHHHhcCCCC--cceEehhhH
Q 016425 39 IIYFTLGLGFLLPWNAFITAVDYFSYLYPEAS--VDRIFAVAYMLVGLFCLVIIVFYAHKSD--AWVRINVGL 107 (390)
Q Consensus 39 ~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~Ri~~~l 107 (390)
+.|.++.++.-.+=|.+.+-.+++-+...+.+ -.+.+++.+-...++..++...+..|+. .+.|.....
T Consensus 276 w~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~ 348 (495)
T KOG2533|consen 276 WPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIV 348 (495)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34455555555666666666555554411111 2346677777888888888888878764 444444333
No 195
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=56.70 E-value=2.2e+02 Score=28.59 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=36.9
Q ss_pred HHHhhhchhhhhhheeecCCcCChhhHHHHhH-HHHHHHHHHHHHHHHHH
Q 016425 337 CLLGLTNGYLTSVLMILAPKVVQLQHAETAGI-VIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 337 ~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~-~~~~~l~~Gl~~Gs~ls 385 (390)
.+.|+|-|.....++.|..+.++++.|..+=. ...+...+|..+|+.++
T Consensus 309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig 358 (400)
T PF03825_consen 309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG 358 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46899999999999999999888877765533 44556667777777654
No 196
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=56.26 E-value=48 Score=34.32 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=74.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.+..++++|-.+|........ ...||..++++. +.++.-.+++...+ +.+..++-=++.|+.-|......-+|
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~--~~~~iG~ii~~~a~----~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAV--VLFLIGAIIIALAP----SWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHhh----hHHHHHHHHHHhccchhhhhhcchhh
Confidence 446688888888888876533 345666555544 33333333333222 44555566667798888888888889
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
..+..+++.|...+....++.+.|+.+|-+.+.
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888899999999999999999999966554
No 197
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=55.60 E-value=1.8e+02 Score=27.82 Aligned_cols=41 Identities=20% Similarity=0.071 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCcceEe-hhhHHHHHHHHH
Q 016425 75 FAVAYMLVGLFCLVIIVFYAHKSDAWVRI-NVGLGLFVVALL 115 (390)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri-~~~l~~~~v~~~ 115 (390)
+...+.+..++..+..-++.+|.+.+.|. ..+..+.+++.+
T Consensus 237 ~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 278 (355)
T TIGR00896 237 LLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLC 278 (355)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 33455666677777777777877544443 344444444443
No 198
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=55.12 E-value=2e+02 Score=27.52 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=12.7
Q ss_pred HHHHhhhhhhhhhchhhhhcC-CCCHH
Q 016425 141 AVALSGLADALVQGGLIGAAG-ELPDR 166 (390)
Q Consensus 141 ~~~~~g~~~~~~q~s~~~la~-~fp~~ 166 (390)
...+.|++.+..+........ ..|++
T Consensus 294 ~~~~~g~~~g~~~~~~~~~~~~~~~~~ 320 (375)
T TIGR00899 294 LQLLNAIFIGILAGIGMLYFQDLMPGR 320 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 344455555555554444443 34544
No 199
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=53.26 E-value=59 Score=32.11 Aligned_cols=104 Identities=15% Similarity=-0.037 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.....|.++=.++-....+.. ...+|++..... .++..-.+.|...| +.+...+.-++.|+..|-........
T Consensus 48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~--~l~~~~~~~~~~a~----~~~~ll~~r~l~Gig~~~~~~~~~~~ 121 (393)
T PRK09705 48 LLTALPVVTMGGLALAGSWLHQHVSERRSVAISL--LLIAVGALMRELYP----QSALLLSSALLGGVGIGIIQAVMPSV 121 (393)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHH--HHHHHHHHHHHHCc----chHHHHHHHHHHHhHHHHHhhhhhHH
Confidence 345556666555544443322 235666655554 34443333443322 33445566667788887655554444
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
.++.. +++|..+..+.......|..+|..++
T Consensus 122 ~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~ 152 (393)
T PRK09705 122 IKRRF-QQRTPLVMGLWSAALMGGGGLGAAIT 152 (393)
T ss_pred HHHHc-cccchhHHHHHHHHHHHHHHHHHHHH
Confidence 44444 36677777776666777777777654
No 200
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=53.21 E-value=70 Score=31.58 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=42.9
Q ss_pred cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 016425 328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWFW 388 (390)
Q Consensus 328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~~ 388 (390)
+.+..++.-++.|+..|.. ........+..+++||..+-.+......+|..+|..++...
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l 137 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI 137 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777889888753 33333335667788999999999999999998887776543
No 201
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=52.62 E-value=1.3e+02 Score=29.59 Aligned_cols=106 Identities=10% Similarity=0.145 Sum_probs=48.2
Q ss_pred hhHHHHhhcc-hhhhhcccCCCccc-hhhhhhHH---HHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhh
Q 016425 49 LLPWNAFITA-VDYFSYLYPEASVD-RIFAVAYM---LVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAV 123 (390)
Q Consensus 49 L~pwn~~ita-~dyf~~~~~~~~~~-~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~ 123 (390)
...++.+.+. ..|+++.+.+.+.+ ..+..... +...+......++.+|++.+..+..+..+..+.+...+.
T Consensus 228 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~---- 303 (396)
T TIGR00882 228 ACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF---- 303 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh----
Confidence 3455555443 34544444322222 22232222 233344455556777777665555555555444433221
Q ss_pred eecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHH
Q 016425 124 YIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDR 166 (390)
Q Consensus 124 ~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~ 166 (390)
.+ + . +...+...+.|++....+.....+... .|++
T Consensus 304 -~~-~-----~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 339 (396)
T TIGR00882 304 -AT-T-----A-LEVVILKMLHAFEVPFLLVGCFKYITSQFDVR 339 (396)
T ss_pred -cC-C-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 11 1 1 112334455666666666555555543 4444
No 202
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=52.41 E-value=1e+02 Score=32.02 Aligned_cols=137 Identities=10% Similarity=0.143 Sum_probs=74.4
Q ss_pred chhhHHHHHHhhhhhhHHHHhhcchhhhhcccCCCcc------chhhhhhHHHHHHHHH-HHHH---Hhc--C-CCCcce
Q 016425 35 HLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPEASV------DRIFAVAYMLVGLFCL-VIIV---FYA--H-KSDAWV 101 (390)
Q Consensus 35 ~~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~~~~------~~~~~~~~~~~~l~~~-~~~~---~~~--~-~~~~~~ 101 (390)
-.+++.+++.++..-.-|+=.-+....|.++.-|.+. ..++.-.+-+..++.. ++.. +.. + +.+...
T Consensus 267 ~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~ 346 (493)
T PRK15462 267 LGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWG 346 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHH
Confidence 3466777777665555666556666777776544431 2233222222222222 1111 221 1 134556
Q ss_pred EehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhh
Q 016425 102 RINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAG 174 (390)
Q Consensus 102 Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G 174 (390)
+...|+++..++++++.+... ..+ +.+....+| .+...++.+++-=+.....+++.+..-|+..++.+.|
T Consensus 347 Kfa~g~~~~g~~f~~l~~~~~-~~~-~~~~~s~~w-l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg 416 (493)
T PRK15462 347 KFALGLGLMSAGFCILTLSAR-WSA-MYGHSSLPL-MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTG 416 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hcC-CCCCcCHHH-HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHH
Confidence 788899998888887665432 222 222233344 4555667788888888888888876655444444433
No 203
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=51.40 E-value=30 Score=36.25 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=53.4
Q ss_pred Cchh-HHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHH
Q 016425 298 NEKV-AIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVL 376 (390)
Q Consensus 298 ~~~~-l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~ 376 (390)
++|+ +...-+.|.+..-.+..+.... .-+.|..+++.++.|..+......-...-|+.++++|-..|-.+.+...+.
T Consensus 73 drrrili~~~~~~~~~~~~L~~l~~~~--~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~ni 150 (524)
T PF05977_consen 73 DRRRILILSQLLRALVALLLAVLAFFG--LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNI 150 (524)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHH
Confidence 4444 4444566765433332222110 224466678888899999888888888889999998887777777776666
Q ss_pred HHHHH
Q 016425 377 GLAAG 381 (390)
Q Consensus 377 Gl~~G 381 (390)
.-.+|
T Consensus 151 ar~iG 155 (524)
T PF05977_consen 151 ARIIG 155 (524)
T ss_pred HHhcc
Confidence 55554
No 204
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=48.97 E-value=1.3e+02 Score=23.56 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhh
Q 016425 79 YMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIG 158 (390)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~ 158 (390)
+.+..++.....-++.+|.+.|..+..+..+..+..+.... .+ .++..++...+.|++.+..+....+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~g~~~~~~~~~~~~ 74 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL-----SS-------NITVLIIARFLQGFGAAFALVAGAA 74 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH-----hc-------cHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34455555555556667766554444444444444333221 11 1233445566778777777766666
Q ss_pred hcC-CCCHHH
Q 016425 159 AAG-ELPDRY 167 (390)
Q Consensus 159 la~-~fp~~~ 167 (390)
+.. .+|++.
T Consensus 75 ~~~~~~~~~~ 84 (141)
T TIGR00880 75 LIADIYPPEE 84 (141)
T ss_pred HHHHHCChhh
Confidence 554 456554
No 205
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=46.64 E-value=3.4e+02 Score=27.78 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=43.0
Q ss_pred CcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCC-CHHH
Q 016425 98 DAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGEL-PDRY 167 (390)
Q Consensus 98 ~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~f-p~~~ 167 (390)
+...|+..|.++..+++....+.. ...+ +... ..++......++.+++..+......++.+.. |++.
T Consensus 347 ~~~~k~~~G~~l~~~~~~~~~~~~-~~~~-~~~~-~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~ 414 (475)
T TIGR00924 347 TTPLKFTLGMLFCGASFLTFAASI-WFAD-AGGL-TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL 414 (475)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH-hhcC-CCCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence 344577888888888877654431 1111 1112 2344455667788999999999999988865 5543
No 206
>PRK11010 ampG muropeptide transporter; Validated
Probab=45.99 E-value=72 Score=32.84 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=40.9
Q ss_pred hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
+...+..++.|+..+-.....-.+.++..+++||..+..+......+|..+|+.++..
T Consensus 108 ~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~ 165 (491)
T PRK11010 108 RWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALW 165 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566665555555555666777888899999999999888898888766543
No 207
>PRK09848 glucuronide transporter; Provisional
Probab=45.64 E-value=3.2e+02 Score=27.27 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhhhchhhhhhheeecCCcCChhh-------HHHHhHHHHHHHHHHHHHHHHHH
Q 016425 330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQH-------AETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~e-------ke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+..++.++++|+..|...+......++.++.+| +.....+.+++..+|..+|..+.
T Consensus 320 ~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~ 382 (448)
T PRK09848 320 PVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP 382 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777766666655555555443 24455677888888888877664
No 208
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=43.60 E-value=1.1e+02 Score=31.87 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=48.9
Q ss_pred cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
+.+...++-+++|+..|-.. .+..+..+.++++||..+..+..-+..+|-++|+.++=+
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999987777 666677788899999999999999999999999887654
No 209
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=41.87 E-value=2.5e+02 Score=28.53 Aligned_cols=71 Identities=10% Similarity=0.203 Sum_probs=37.7
Q ss_pred HHHHHHhhhhhhHHHHhhcc-hhhhhcccCCCccch----hhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHH
Q 016425 39 IIYFTLGLGFLLPWNAFITA-VDYFSYLYPEASVDR----IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFV 111 (390)
Q Consensus 39 ~~f~llGi~~L~pwn~~ita-~dyf~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~ 111 (390)
+..+++|... -|+++-.. ..||...+++.+..+ .....-...+.+...+..++.+|+..|.-...+.+++.
T Consensus 225 ~~l~v~g~~~--~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~ 300 (412)
T PF01306_consen 225 FVLFVIGVAA--IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMA 300 (412)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHH
Confidence 3344555432 34555443 367777776654322 22233344566666777778888887655544444443
No 210
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=41.83 E-value=3.7e+02 Score=27.84 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=53.6
Q ss_pred HHHHhhcchhhhhccc-CCCccchh-hhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheeccc
Q 016425 51 PWNAFITAVDYFSYLY-PEASVDRI-FAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (390)
Q Consensus 51 pwn~~ita~dyf~~~~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~ 128 (390)
..|..-+..-||-++. .+++...+ +...+....+++....+++.+|+..|.-...+.++.++.-... .+..
T Consensus 251 ~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~-----~f~~-- 323 (467)
T COG2211 251 AFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL-----YFTP-- 323 (467)
T ss_pred HHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHH-----Hhhc--
Confidence 4566666667776654 44444443 3345555666667778888888876555555655555443322 1111
Q ss_pred CCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE 162 (390)
Q Consensus 129 ~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~ 162 (390)
. . ..++.++..++.+++.+....---++.+.
T Consensus 324 ~-~--~~~l~~~~~~i~~~g~~~~~~l~wam~~d 354 (467)
T COG2211 324 A-G--SVVLIVVALIIAGVGTGIANPLPWAMVAD 354 (467)
T ss_pred C-c--chHHHHHHHHHHHHHhhccccccHHHhcc
Confidence 1 1 12333344445556655555444444443
No 211
>PTZ00207 hypothetical protein; Provisional
Probab=40.82 E-value=4.8e+02 Score=27.89 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 016425 75 FAVAYMLVGLFCLVIIVF 92 (390)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~ 92 (390)
+...+.+-|.++-+..-.
T Consensus 396 ~vsL~si~~~~GRl~~g~ 413 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSY 413 (591)
T ss_pred ehhhhhHHHHhhHHHHHH
Confidence 455556666666555443
No 212
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=40.63 E-value=1.1e+02 Score=31.63 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHhhhchhhhhhheeecCCcCChhhH--HHHhHHHHHHHHHHHHHHHHHHH
Q 016425 338 LLGLTNGYLTSVLMILAPKVVQLQHA--ETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 338 lfgltnGy~~t~~mi~~p~~v~~~ek--e~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
++.++++-+..-.-.+.++.+++++| +.+-...+++..+|-.+|..++.
T Consensus 123 lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~ 173 (477)
T TIGR01301 123 ILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA 173 (477)
T ss_pred HHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445554444445556676766554 46777788888888888877664
No 213
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=38.22 E-value=1.2e+02 Score=30.77 Aligned_cols=113 Identities=14% Similarity=0.077 Sum_probs=63.1
Q ss_pred hhHHHHHHhhhhhhHHHHhhcchhhhhcc-cCCCccchhhhhhHHHHHHHHHHHHHHhcCCCCcceEe-hhhHHHHHHHH
Q 016425 37 AYIIYFTLGLGFLLPWNAFITAVDYFSYL-YPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRI-NVGLGLFVVAL 114 (390)
Q Consensus 37 ~y~~f~llGi~~L~pwn~~ita~dyf~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri-~~~l~~~~v~~ 114 (390)
+...|+-.|. -..-|+.+.+-. .+. =.++.....+...+...-.++.++...+.+|++.+.-. ..+++..++++
T Consensus 242 vl~~FlYVG~-Eva~gsfl~~y~---~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~ 317 (422)
T COG0738 242 VLAIFLYVGA-EVAIGSFLVSYL---EELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL 317 (422)
T ss_pred HHHHHHHHhH-HHHHHHHHHHHH---HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 5567777786 444577777654 332 11222334444455666666667777777777643322 22222222222
Q ss_pred HHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHH
Q 016425 115 LVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYM 168 (390)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~~ 168 (390)
.+ ..++ + .+.+..+.++|...+.+-.++++++-. +| +++
T Consensus 318 ~~------~l~~---g-----~v~~~~l~~ig~F~simfPTIfslal~~l~-~~t 357 (422)
T COG0738 318 AV------ALIG---G-----VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHT 357 (422)
T ss_pred HH------HHhc---C-----hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccc
Confidence 21 1222 1 335566778899999999999999875 55 443
No 214
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=37.31 E-value=95 Score=28.42 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=29.7
Q ss_pred CCCCCCccchhhHHHHHHhhhhhhHHHHhhcchhhhhcccCC
Q 016425 27 QKPPPDTFHLAYIIYFTLGLGFLLPWNAFITAVDYFSYLYPE 68 (390)
Q Consensus 27 ~~~p~d~~~~~y~~f~llGi~~L~pwn~~ita~dyf~~~~~~ 68 (390)
||+-|+........+..+|+..++ ||-.+.+.=-|-+|.|.
T Consensus 149 eRpgksgl~~svl~~~~lg~~~lf-inrrLGtNYlylsk~P~ 189 (236)
T COG5522 149 ERPGKSGLVMSVLVAISLGIMCLF-INRRLGTNYLYLSKEPE 189 (236)
T ss_pred cCCCccchhHHHHHHHHHHHHHHH-HHHHhcCceeEeecCCC
Confidence 566666667778888899987766 99998887444555665
No 215
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=35.69 E-value=2.2e+02 Score=29.72 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=46.7
Q ss_pred cchhhHHHHHHhhhhhh-HHHHhhcc--hhhhhcccCCC------ccch---hhhhhHHHHHHHHHHHHHHhcCCCCcce
Q 016425 34 FHLAYIIYFTLGLGFLL-PWNAFITA--VDYFSYLYPEA------SVDR---IFAVAYMLVGLFCLVIIVFYAHKSDAWV 101 (390)
Q Consensus 34 ~~~~y~~f~llGi~~L~-pwn~~ita--~dyf~~~~~~~------~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 101 (390)
.|.-.-...+-|+|.+. .|-.+.-. ..-+.+.|.+. -++. ....+.++-++..++..-+++.++..|.
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 35556667788888755 33322211 23333333221 1232 3334556667778888888888877665
Q ss_pred EehhhHHHHHHHHH
Q 016425 102 RINVGLGLFVVALL 115 (390)
Q Consensus 102 Ri~~~l~~~~v~~~ 115 (390)
-.-..+++++++-+
T Consensus 116 vYG~~liImIi~t~ 129 (538)
T KOG0252|consen 116 VYGKELIIMIICSA 129 (538)
T ss_pred hhhHHHHHHHHHHH
Confidence 55566777777766
No 216
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=34.76 E-value=2.9e+02 Score=26.92 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCCCCcceEehhhHH
Q 016425 82 VGLFCLVIIVFYAHKSDAWVRINVGLG 108 (390)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~Ri~~~l~ 108 (390)
..++...+.-++.+|++.+.-+..+..
T Consensus 256 ~~~~g~~~~g~l~~r~g~~~~l~~~~~ 282 (390)
T TIGR02718 256 TVLLGCGGGAWLVRRAGLWRTFILGVG 282 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334445555666777665433333433
No 217
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=33.19 E-value=2.7e+02 Score=28.70 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=39.0
Q ss_pred cceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHHH
Q 016425 99 AWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRYM 168 (390)
Q Consensus 99 ~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~~ 168 (390)
...|+..|+++..++++...+....+...+ .....+.....-++.|++-++.....++.+. .-|+++.
T Consensus 345 ~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~--~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~ 413 (489)
T PRK10207 345 MPMKFTLGMFLCSLGFLTAAAAGMWFADAQ--GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM 413 (489)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH
Confidence 334788888887777654432211122111 1122333445567788888888888887775 4566653
No 218
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=30.77 E-value=1.5e+02 Score=30.57 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=39.3
Q ss_pred HHhhhchhhhhhhe--eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 338 LLGLTNGYLTSVLM--ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 338 lfgltnGy~~t~~m--i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
+.|++.|+....+- .+.++..+.++|-.+=.++.-++..|+++|..++-.
T Consensus 119 ~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~ 170 (463)
T KOG2816|consen 119 LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY 170 (463)
T ss_pred hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 78888888877665 456777888899888888888888888888777654
No 219
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=29.24 E-value=52 Score=22.33 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=17.9
Q ss_pred hHHHHhHHHHHHHHHHHHHH
Q 016425 362 HAETAGIVIVLFLVLGLAAG 381 (390)
Q Consensus 362 eke~ag~~~~~~l~~Gl~~G 381 (390)
.|-++|.++.+++.-|+.+|
T Consensus 2 kkll~~slltlam~~gislg 21 (48)
T PF05968_consen 2 KKLLIGSLLTLAMAWGISLG 21 (48)
T ss_pred chHHHhHHHHHHHHhhhhhh
Confidence 36689999999999999998
No 220
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=29.14 E-value=1.4e+02 Score=23.07 Aligned_cols=15 Identities=7% Similarity=-0.226 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhHHHH
Q 016425 231 WHIVGRVKWYGFGIL 245 (390)
Q Consensus 231 ~~v~k~i~~~~~~~~ 245 (390)
.++.+..++..+...
T Consensus 66 ~~~~~~~~~~ll~~~ 80 (92)
T PF13038_consen 66 YRVSRWTYPLLLIGL 80 (92)
T ss_pred hHhHHHHHHHHHHHH
Confidence 344455555555443
No 221
>COG5547 Small integral membrane protein [Function unknown]
Probab=28.87 E-value=1.6e+02 Score=21.14 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=14.3
Q ss_pred cceEehhhHHHHHHHHHHH
Q 016425 99 AWVRINVGLGLFVVALLVV 117 (390)
Q Consensus 99 ~~~Ri~~~l~~~~v~~~~~ 117 (390)
.+.|++++++..+++.+++
T Consensus 7 fkypIIgglvglliAili~ 25 (62)
T COG5547 7 FKYPIIGGLVGLLIAILIL 25 (62)
T ss_pred hccchHHHHHHHHHHHHHH
Confidence 5789999998877666544
No 222
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=27.57 E-value=6.1e+02 Score=25.06 Aligned_cols=54 Identities=15% Similarity=0.370 Sum_probs=30.5
Q ss_pred cchhhHHHHHHhhhhhhHHHHhhcc-hhhhhcccCCCc--cchhhhhhHHHHHHHHH
Q 016425 34 FHLAYIIYFTLGLGFLLPWNAFITA-VDYFSYLYPEAS--VDRIFAVAYMLVGLFCL 87 (390)
Q Consensus 34 ~~~~y~~f~llGi~~L~pwn~~ita-~dyf~~~~~~~~--~~~~~~~~~~~~~l~~~ 87 (390)
++..++.-+.+-+.....|--|++- ..+|++||.-+. -++..+..|.++.....
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~sp 318 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSP 318 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhh
Confidence 3333333344444555677766665 589999985332 34555666666555443
No 223
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=26.12 E-value=4.7e+02 Score=23.31 Aligned_cols=78 Identities=8% Similarity=0.022 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhcc-CchhHHHHHHHHHHHHhhhhhc--ccCCcccccchhHHHHHHHHhhhchhhh
Q 016425 271 WYGIILIAGYNVFDLVGKSLTAIYLLE-NEKVAIGGCFARLLFFPLFLGC--LHGPKFFRTEIPVTLLTCLLGLTNGYLT 347 (390)
Q Consensus 271 w~~~~~~~~FnvgD~iGR~~~~~~~~~-~~~~l~~lsl~R~ifiplf~~~--~~~p~~~~~d~~~~il~~lfgltnGy~~ 347 (390)
+.....+..|-+|-.+|+.+......+ ++++.....+...++.-...+. ..++.- .......++.+..|+=|+...
T Consensus 50 ~~~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~lafamg~Qn~~~~ 128 (209)
T PF06912_consen 50 LRYLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLLIAALLPPAFPPHG-HRILAIFLLAFAMGMQNAAFR 128 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHHHH
Confidence 455778889999999999994333222 2333333333344433332221 111100 113344556666677666555
Q ss_pred hh
Q 016425 348 SV 349 (390)
Q Consensus 348 t~ 349 (390)
..
T Consensus 129 ~~ 130 (209)
T PF06912_consen 129 RL 130 (209)
T ss_pred Hc
Confidence 43
No 224
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.36 E-value=1.2e+02 Score=24.48 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=24.8
Q ss_pred HhhhhhhHHHHhhcc------hhhhhcccCCCccchhhhhhHHHHHHHHHHHHHH
Q 016425 44 LGLGFLLPWNAFITA------VDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVF 92 (390)
Q Consensus 44 lGi~~L~pwn~~ita------~dyf~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (390)
+|+.+.++|...+.. .-|.+.+|+. ++ .+++...+..++..+.+.+
T Consensus 42 l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t-~~--~~tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 42 LGMFGLIGWSVAIPTLLGVAVGIWLDRHYPS-PF--SWTLTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-Cc--HHHHHHHHHHHHHHHHHHH
Confidence 333344455544433 3555556654 33 5666666666666666664
No 225
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=24.53 E-value=7.9e+02 Score=25.31 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=62.5
Q ss_pred HHHhhhhhhHHHHhhcchhhhhccc-CCCccc----hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHH
Q 016425 42 FTLGLGFLLPWNAFITAVDYFSYLY-PEASVD----RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLV 116 (390)
Q Consensus 42 ~llGi~~L~pwn~~ita~dyf~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~ 116 (390)
+++++++.+-|-+=....|.=..++ ..++++ ++-...|-...+...++.-+...|.....|...+++.++..++.
T Consensus 255 W~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~ 334 (448)
T COG2271 255 WLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITAS 334 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 5667777776655544433211111 111221 12223556677777777778888888888988888777665554
Q ss_pred HHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC
Q 016425 117 VPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG 161 (390)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~ 161 (390)
+... +.. +...+.+..++..+.|+.---=| -+.|+++
T Consensus 335 ~~~~---w~~----~~~~~~l~~~~l~~iGf~IyGPq-mLiGl~a 371 (448)
T COG2271 335 LVLY---WLA----PNGSYLLDAILLFIIGFLIYGPQ-MLIGLAA 371 (448)
T ss_pred HHHH---HcC----CCccHHHHHHHHHHHHHHHhhHH-HHHHHHH
Confidence 4321 221 22245666666667776544444 5556655
No 226
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=24.45 E-value=4.6e+02 Score=22.62 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=59.7
Q ss_pred HhhhhhhHHHHhhcchhhhhcc---cCCCc---cc-----hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHH
Q 016425 44 LGLGFLLPWNAFITAVDYFSYL---YPEAS---VD-----RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVV 112 (390)
Q Consensus 44 lGi~~L~pwn~~ita~dyf~~~---~~~~~---~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v 112 (390)
+|++.++-+-++.|....=+.. ..+++ ++ ....+.|....+. .++.+.+.+++..|.-+..|.....+
T Consensus 1 Lg~~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s-~l~~P~iv~~lg~K~sm~lg~~~y~~ 79 (156)
T PF05978_consen 1 LGIGFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAIS-CLFAPSIVNKLGPKWSMILGSLGYAI 79 (156)
T ss_pred CchHHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHH-HHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4677777777777764222211 22222 11 1333444433332 23445556666666656555554442
Q ss_pred HHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCCCCHHHHHHHHhh
Q 016425 113 ALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGELPDRYMQALVAG 174 (390)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~fp~~~~~a~~~G 174 (390)
-... ..+. ..+..+...++.|++.+++=.+-=.+....+++....-.+|
T Consensus 80 y~~~-----~~~~--------~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ 128 (156)
T PF05978_consen 80 YIAS-----FFYP--------NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTG 128 (156)
T ss_pred HHHH-----HHhh--------hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHH
Confidence 2211 1111 12445666778899998887666666666665554443333
No 227
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.12 E-value=1e+02 Score=25.49 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=9.1
Q ss_pred cchhhHHHHHHhhhhhh
Q 016425 34 FHLAYIIYFTLGLGFLL 50 (390)
Q Consensus 34 ~~~~y~~f~llGi~~L~ 50 (390)
++-..++++++.+|..+
T Consensus 41 wK~I~la~~Lli~G~~l 57 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVL 57 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666665555543
No 228
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=20.51 E-value=8.4e+02 Score=24.13 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CC
Q 016425 85 FCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAG-EL 163 (390)
Q Consensus 85 ~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~f 163 (390)
+..++.-.+..|+..|.=+..+..+..+..+...+..- + . +.+ .......++.=++.|++.|........+.+ .+
T Consensus 78 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~-~-~~~-~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~ 153 (432)
T PRK10406 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPG-Y-E-TIG-TWAPALLLLARLFQGLSVGGEYGTSATYMSEVA 153 (432)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCC-c-h-hHH-HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhC
Confidence 44444445667776555455666665555443322110 0 0 000 011122334455677777776666667766 45
Q ss_pred CHH
Q 016425 164 PDR 166 (390)
Q Consensus 164 p~~ 166 (390)
|++
T Consensus 154 p~~ 156 (432)
T PRK10406 154 VEG 156 (432)
T ss_pred CCC
Confidence 654
Done!