Query 016425
Match_columns 390
No_of_seqs 112 out of 711
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 98.8 2.4E-07 8.3E-12 91.2 18.6 321 47-385 39-403 (451)
2 3o7q_A L-fucose-proton symport 98.2 9.5E-05 3.3E-09 72.2 18.9 107 52-167 42-150 (438)
3 4aps_A DI-OR tripeptide H+ sym 97.6 0.00056 1.9E-08 68.0 12.8 58 328-385 385-442 (491)
4 2gfp_A EMRD, multidrug resista 97.2 0.0011 3.7E-08 63.4 9.4 102 49-162 13-115 (375)
5 2xut_A Proton/peptide symporte 96.8 0.014 4.9E-07 58.3 14.3 58 328-385 404-461 (524)
6 4gc0_A D-xylose-proton symport 96.4 0.033 1.1E-06 54.9 13.4 132 36-167 9-159 (491)
7 1pw4_A Glycerol-3-phosphate tr 94.9 0.084 2.9E-06 51.1 9.1 110 275-386 66-176 (451)
8 3o7q_A L-fucose-proton symport 93.4 0.13 4.6E-06 49.5 7.1 112 273-387 63-175 (438)
9 2xut_A Proton/peptide symporte 89.8 0.39 1.3E-05 47.6 6.0 106 275-385 58-168 (524)
10 4aps_A DI-OR tripeptide H+ sym 87.7 1.4 4.8E-05 43.1 8.3 107 274-386 57-167 (491)
11 2cfq_A Lactose permease; trans 87.3 4.5 0.00016 38.8 11.6 54 330-383 313-367 (417)
12 4gc0_A D-xylose-proton symport 84.9 3.9 0.00013 39.7 9.8 111 275-387 59-184 (491)
13 2gfp_A EMRD, multidrug resista 83.9 1.3 4.4E-05 41.6 5.6 106 274-386 38-145 (375)
14 2cfq_A Lactose permease; trans 70.6 23 0.00077 33.7 10.2 35 81-115 270-304 (417)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.78 E-value=2.4e-07 Score=91.18 Aligned_cols=321 Identities=12% Similarity=0.069 Sum_probs=154.2
Q ss_pred hhhhHHHHhhcchhhhhcccCCCc-cchhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhhee
Q 016425 47 GFLLPWNAFITAVDYFSYLYPEAS-VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYI 125 (390)
Q Consensus 47 ~~L~pwn~~ita~dyf~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~ 125 (390)
...+.++.+....+++.+++ .+. ....+...+.+...+.....-.+.+|+..|.-+..+..+..+..++....... .
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~ 116 (451)
T 1pw4_A 39 AYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-T 116 (451)
T ss_dssp HHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-c
Confidence 33344444555556666655 332 22344456667777777777777788776655556666666655544331100 1
Q ss_pred cccCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHHH----HHHHhhhHHH----------------------
Q 016425 126 KGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYM----QALVAGTAGS---------------------- 178 (390)
Q Consensus 126 ~~~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~~----~a~~~G~~~s---------------------- 178 (390)
+ .++..++.-++.|++.+.......++.+. +|++.- .-...+.+++
T Consensus 117 ~-------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f 189 (451)
T 1pw4_A 117 S-------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 189 (451)
T ss_dssp S-------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred c-------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 1 12334556677888888888888877664 664432 1122222222
Q ss_pred -HHHHHHHH-HHHHHHHHhccchhHHhhhhhhhhhhhhhhhcc--CCCCcccchh--HHHHH--HHHHHHhHHHHHHhhh
Q 016425 179 -VGIVVMVI-CIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKG--SLTGSMWRSA--VWHIV--GRVKWYGFGILLIYIV 250 (390)
Q Consensus 179 -ia~~~~~~-~~~~y~~l~~~~~~~~~~~~~~~~~~e~~e~~~--~~~~~~~~~~--~~~v~--k~i~~~~~~~~l~f~v 250 (390)
+..++.++ .++.+..+++.|..+...+. ++.+++++++. +.+++....+ .++++ |..|...+..++..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (451)
T 1pw4_A 190 YMPAFCAILVALFAFAMMRDTPQSCGLPPI--EEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL 267 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--TTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHhhcCCCCh--hhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHH
Confidence 11111111 11222222222221100000 00000000000 0000011111 22332 3344444444443332
Q ss_pred h---ceeccceEeeeeccCCCchhHHHHHHHHHHhhhhhhhhhhhhhhc-c--CchhHHHHH-HHHHHHHhhhhhcccCC
Q 016425 251 T---LSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLL-E--NEKVAIGGC-FARLLFFPLFLGCLHGP 323 (390)
Q Consensus 251 T---l~vFPgi~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~-~--~~~~l~~ls-l~R~ifiplf~~~~~~p 323 (390)
. ...+|-+..+ . ...+....-.....+.++..+|+.+..+..- . ++|+.+... +.-. .+-++++... +
T Consensus 268 ~~~~~~~~~~~~~~-~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 342 (451)
T 1pw4_A 268 RYGILDWSPTYLKE-V--KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV-TIATIVYWMN-P 342 (451)
T ss_dssp HHHHHHHHHHHBTT-B--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH-HHHHHHTTSC-C
T ss_pred HHHHHHHHHHHHHH-h--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHHHHHHHHh-c
Confidence 2 2233443211 1 1112223334577888999999988765442 2 444433222 2111 1112222111 1
Q ss_pred cccccchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHH-HHHHHHHHH
Q 016425 324 KFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVL-GLAAGSIVA 385 (390)
Q Consensus 324 ~~~~~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~-Gl~~Gs~ls 385 (390)
. .+.+...+..+++|+..|........+..+..++++|..+-.+......+ |..+|..+.
T Consensus 343 ~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 343 A--GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp T--TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23455567777888888777777667777888888898888888887777 887777653
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.17 E-value=9.5e-05 Score=72.20 Aligned_cols=107 Identities=10% Similarity=0.014 Sum_probs=65.6
Q ss_pred HHHhhcchhhhhcccCCCccc-hhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecccCC
Q 016425 52 WNAFITAVDYFSYLYPEASVD-RIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVG 130 (390)
Q Consensus 52 wn~~ita~dyf~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~~~~ 130 (390)
++.+-...+++++.+.-++.+ ..+...+.+...+.....-.+.+|+..|.-+..+..+..+..++...... .+
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~---- 115 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IM---- 115 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--TT----
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--cc----
Confidence 344445566677766433322 33444556666666666667778887766666777776666554422111 11
Q ss_pred cchhhHHHHHHHHHhhhhhhhhhchhhhhcC-CCCHHH
Q 016425 131 LYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY 167 (390)
Q Consensus 131 ~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~-~fp~~~ 167 (390)
.++..++.-++.|++.+..+....++.+ .+|++.
T Consensus 116 ---~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 150 (438)
T 3o7q_A 116 ---NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS 150 (438)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT
T ss_pred ---cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh
Confidence 2445566778899999999988888777 456544
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.57 E-value=0.00056 Score=68.00 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=46.9
Q ss_pred cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+.++..+..+++|+..|........+..+..++++|..+..+......+|..+|+.+.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778889999888888888888888888898888888888888888887764
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.20 E-value=0.0011 Score=63.38 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=63.8
Q ss_pred hhHHHHhhcchhhhhcccCCCcc-chhhhhhHHHHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHHHHHHhhhheecc
Q 016425 49 LLPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKG 127 (390)
Q Consensus 49 L~pwn~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~~~~~~~~~~~~~ 127 (390)
.+.++.+....+.+.+++.-++. .......+.+...+.....-.+.+|...|.-+..+..+..+..+.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------- 85 (375)
T 2gfp_A 13 QMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------
Confidence 34455555555556655543222 2344456667777777777778888887777777777777666554432
Q ss_pred cCCcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC
Q 016425 128 RVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE 162 (390)
Q Consensus 128 ~~~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~ 162 (390)
..++..++..++.|++.+..+....++.+.
T Consensus 86 -----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~ 115 (375)
T 2gfp_A 86 -----SSLTVLIAASAMQGMGTGVGGVMARTLPRD 115 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 123445566677888888887777776654
No 5
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.85 E-value=0.014 Score=58.25 Aligned_cols=58 Identities=12% Similarity=-0.061 Sum_probs=45.1
Q ss_pred cchhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 016425 328 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 385 (390)
Q Consensus 328 ~d~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls 385 (390)
+.++.++..+++|+..|........+..+..++++|..+..+......+|-.+|+.+.
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 461 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778889999888888888888888888888887777777777777776654
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.42 E-value=0.033 Score=54.92 Aligned_cols=132 Identities=10% Similarity=0.053 Sum_probs=66.4
Q ss_pred hhhHHHHHHhhh-hhhHHHHhh--cchhhhhcccCCCc-----c----chhhhhhHHHHHHHHHHHHHHhcCCCCcceEe
Q 016425 36 LAYIIYFTLGLG-FLLPWNAFI--TAVDYFSYLYPEAS-----V----DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRI 103 (390)
Q Consensus 36 ~~y~~f~llGi~-~L~pwn~~i--ta~dyf~~~~~~~~-----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri 103 (390)
..|.+.++.++| .+..|+.-+ .+.+++++.|...+ . ...+.-.+.+...+..++.-.+..|+..|.=+
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 344444444444 445776433 34566666553211 1 11233345556666666666677776655545
Q ss_pred hhhHHHHHHHHHHHHHhhhheecc--cC----CcchhhHHHHHHHHHhhhhhhhhhchhhhhcCC-CCHHH
Q 016425 104 NVGLGLFVVALLVVPVMDAVYIKG--RV----GLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRY 167 (390)
Q Consensus 104 ~~~l~~~~v~~~~~~~~~~~~~~~--~~----~~~~~f~~~l~~~~~~g~~~~~~q~s~~~la~~-fp~~~ 167 (390)
..+.+++.+.-+............ .. ..-..+...++.=++.|++.|........+.+. .|++.
T Consensus 89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~ 159 (491)
T 4gc0_A 89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh
Confidence 566666655544332110000000 00 001123444566677888888888888777775 56544
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=94.89 E-value=0.084 Score=51.09 Aligned_cols=110 Identities=12% Similarity=-0.058 Sum_probs=72.2
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhheee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMIL 353 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi~ 353 (390)
.+..++.++..++.....+.. ..++|+++.... ++.....+.+...|..-++.+..++..++.|+..|........+
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 143 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 143 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH--HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHH
Confidence 446678888888877765433 245555433332 22221122211100002344566777888899999888888888
Q ss_pred cCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 354 APKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 354 ~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
.++..++++|..+..+......+|..+|..++-
T Consensus 144 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 144 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999988887763
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=93.42 E-value=0.13 Score=49.49 Aligned_cols=112 Identities=7% Similarity=-0.085 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 273 GIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 273 ~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
.-.+...+.++..++.....+.. ..++|+.+.... ++.....+++... .+.++.+..++..++.|+..|-......
T Consensus 63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~--~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 139 (438)
T 3o7q_A 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL--FLYALGAALFWPA-AEIMNYTLFLVGLFIIAAGLGCLETAAN 139 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH--HHHHHHHHHHHhc-cccccHHHHHHHHHHHHhhHHHhhhhHH
Confidence 33556788888888888765533 345666543332 2222111111000 0123445667778888999999888888
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
.+..+..++++|..+..+...+..+|..+|..++-.
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 140 PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888898999998889999999999888877543
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=89.82 E-value=0.39 Score=47.60 Aligned_cols=106 Identities=8% Similarity=-0.100 Sum_probs=65.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-cc-CchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhee
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LE-NEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 352 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~-~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~mi 352 (390)
....++.++..+|.....+.. .. ++|+.+.... ++.....+++...+ .+.+..++..++.|+..|........
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~ 132 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS--LIYCVGHAFLAIFE---HSVQGFYTGLFLIALGSGGIKPLVSS 132 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH--HHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhccccchhHHH
Confidence 446678888888887765543 23 5665443332 22222122211111 13455667778889999988888888
Q ss_pred ecCCcCChhhHHHHhHH---HHHHHHHHHHHHHHHH
Q 016425 353 LAPKVVQLQHAETAGIV---IVLFLVLGLAAGSIVA 385 (390)
Q Consensus 353 ~~p~~v~~~eke~ag~~---~~~~l~~Gl~~Gs~ls 385 (390)
+.++..++++|..+... ...+..+|..+|..++
T Consensus 133 ~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 133 FMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888766666 6666777777776553
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=87.72 E-value=1.4 Score=43.06 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-c-cCchhHHHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 274 IILIAGYNVFDLVGKSLTAIYL-L-ENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 274 ~~~~~~FnvgD~iGR~~~~~~~-~-~~~~~l~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
-....++.++-.+|.....+.. . .++|+...... ++.....+.+.. -++.+..++..++.|+..|-......
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~ 130 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG--VLIMLGHIVLAL----PFGASALFGSIILIIIGTGFLKPNVS 130 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH--HHHHHHHHHHHS----CCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH--HHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHhccchHH
Confidence 3556788888888888776543 3 35666543332 222222222222 13445667778888999998888888
Q ss_pred eecCCcCChhh--HHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 352 ILAPKVVQLQH--AETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 352 i~~p~~v~~~e--ke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
.+..+..++++ |..+-.+...+..+|..+|..++-
T Consensus 131 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 131 TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence 77777777766 555666666777777777766553
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=87.32 E-value=4.5 Score=38.77 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhhhchhhhhhheeecCCcCChhhHHHHhHH-HHHHHHHHHHHHHH
Q 016425 330 IPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIV-IVLFLVLGLAAGSI 383 (390)
Q Consensus 330 ~~~~il~~lfgltnGy~~t~~mi~~p~~v~~~eke~ag~~-~~~~l~~Gl~~Gs~ 383 (390)
+..++..++.++..+........+.++..+++.|..+... ...+-.+|-.+|..
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~ 367 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 4444555556666554444445566777777777665444 24444455444443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=84.89 E-value=3.9 Score=39.72 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=75.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-ccCchhHHHHHHHHHHHHhhhhhcccC-------------Cccc-ccchhHHHHHHHH
Q 016425 275 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHG-------------PKFF-RTEIPVTLLTCLL 339 (390)
Q Consensus 275 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~lsl~R~ifiplf~~~~~~-------------p~~~-~~d~~~~il~~lf 339 (390)
.+...|.+|-.+|-.+..+.. ...||+.+..+. +++...-+.|... +..+ ++.+..++.=++.
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~--~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~ 136 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAA--VLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG 136 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence 345567777777776654433 346676555444 3333222222210 1112 2334456667788
Q ss_pred hhhchhhhhhheeecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHHh
Q 016425 340 GLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 387 (390)
Q Consensus 340 gltnGy~~t~~mi~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~~ 387 (390)
|+..|-....+..+..+..++++|...+.+...+...|...+..++..
T Consensus 137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence 999999999999999999999999999999999999999999887754
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=83.92 E-value=1.3 Score=41.59 Aligned_cols=106 Identities=8% Similarity=0.015 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhc-cCchhH-HHHHHHHHHHHhhhhhcccCCcccccchhHHHHHHHHhhhchhhhhhhe
Q 016425 274 IILIAGYNVFDLVGKSLTAIYLL-ENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLM 351 (390)
Q Consensus 274 ~~~~~~FnvgD~iGR~~~~~~~~-~~~~~l-~~lsl~R~ifiplf~~~~~~p~~~~~d~~~~il~~lfgltnGy~~t~~m 351 (390)
-.....+.++..++.....+..- .++|+. .+..+...+...+... .++.+..++..++.|+..|...+...
T Consensus 38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~g~~~~~~~~~~~ 110 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT-------TSSLTVLIAASAMQGMGTGVGGVMAR 110 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHHHHhhhhhHH
Confidence 35577888888888887665432 344543 3333333332222211 12335566777788999888888777
Q ss_pred eecCCcCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 016425 352 ILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 386 (390)
Q Consensus 352 i~~p~~v~~~eke~ag~~~~~~l~~Gl~~Gs~ls~ 386 (390)
.+.++..++++|..+..+.......|..+|..++-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 111 TLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145 (375)
T ss_dssp HHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777777788888888888888888888877654
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=70.58 E-value=23 Score=33.73 Aligned_cols=35 Identities=6% Similarity=0.076 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCCCcceEehhhHHHHHHHHH
Q 016425 81 LVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALL 115 (390)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~v~~~ 115 (390)
+.+.+......++.+|+..+..+..+..+..+.++
T Consensus 270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 34445556666677776654444455555444433
Done!