BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016426
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G2W|A Chain A, Crystal Structure Of The Shv D104k
Beta-lactamase/beta-lactamase Inhibitor Protein (blip)
Complex
Length = 265
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 225 ALLAIEKASDENLSRK----KLCLAKEASILLMVAHDGFSVSELCLHYLLASSNIDEVIL 280
A+LA A DE L RK + L K + + DG +V ELC + S N +L
Sbjct: 54 AVLARVDAGDEQLERKIHYRQQDLVKYSPVSEKHLADGMTVGELCAAAITMSDNSAANLL 113
Query: 281 SSSISKLNGKELMGLIRYLGKWLKKFERF 309
+++ G L +R +G + + +R+
Sbjct: 114 LATVGGPAG--LTAFLRQIGDNVTRLDRW 140
>pdb|2WA0|A Chain A, Crystal Structure Of The Human Magea4
Length = 240
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 272 SSNIDEVILSSSISKLNGKELMGLIRYLGKWLKKFER-----FPQAGPCPEASFGLGLKA 326
S+ +DE + + K KEL+ L + +K ++R F +A + FG+ +K
Sbjct: 34 SNKVDE-LAHFLLRKYRAKELVTKAEMLERVIKNYKRCFPVIFGKASESLKMIFGIDVKE 92
Query: 327 CDWVPKLEVIVQCLGLVLD 345
D +V CLGL D
Sbjct: 93 VDPTSNTYTLVTCLGLSYD 111
>pdb|1KNO|A Chain A, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|C Chain C, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
pdb|1KNO|E Chain E, Crystal Structure Of The Complex Of A Catalytic Antibody
Fab With A Transition State Analog: Structural
Similarities In Esterase-Like Abzymes
Length = 214
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 101 IGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDV-ASLVLEACISLRIWELVETLIVHGL 159
+GE+V ++ R ++ SGY L +K + R + A+ L++ + R G
Sbjct: 15 LGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRF---------SGS 65
Query: 160 VDHSSYSNLVTRLATEKRSDLLCLCVKYSP-DLGSSELLCILKYFLCP 206
S YS ++ L +E +D CL SP G L IL+ P
Sbjct: 66 RSGSDYSLTISSLESEDFADYYCLQYASSPYTFGGGTKLEILRADAAP 113
>pdb|2GFB|A Chain A, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|C Chain C, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|E Chain E, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|G Chain G, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|I Chain I, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|K Chain K, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|M Chain M, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
pdb|2GFB|O Chain O, Crystal Structure Of A Catalytic Fab Having Esterase-Like
Activity
Length = 214
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 101 IGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDV-ASLVLEACISLRIWELVETLIVHGL 159
+GE+V ++ R ++ SGY L +K + R + A+ L++ + R G
Sbjct: 15 LGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRF---------SGS 65
Query: 160 VDHSSYSNLVTRLATEKRSDLLCLCVKYSP-DLGSSELLCILKYFLCP 206
S YS ++ L +E +D CL SP G L IL+ P
Sbjct: 66 RSGSDYSLTISSLESEDFADYYCLQYASSPYTFGGGTKLEILRGGAAP 113
>pdb|4F3Y|A Chain A, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
pdb|4F3Y|B Chain B, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
Length = 272
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 89 EFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLR 146
+ +G IGE++ I T + S Y QG + FL GRD ++ + LR
Sbjct: 216 DIVGDHTVLFAGIGERIEI-THKSASRVSYAQGALRAARFLAGRDAGFFDMQDVLGLR 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,718,836
Number of Sequences: 62578
Number of extensions: 408851
Number of successful extensions: 843
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 5
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)