Query         016426
Match_columns 390
No_of_seqs    55 out of 57
Neff          3.8 
Searched_HMMs 29240
Date          Mon Mar 25 13:23:22 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016426hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3hjl_A Flagellar motor switch   60.0 1.3E+02  0.0045   29.3  13.8  106   74-191    41-155 (329)
  2 2ld7_B Paired amphipathic heli  53.5     5.5 0.00019   31.3   1.7   46   69-131    12-57  (75)
  3 2dae_A KIAA0733 protein; mitog  34.6      31  0.0011   27.5   3.3   27  176-202     9-35  (75)
  4 1ssz_A Pulmonary surfactant-as  33.4       7 0.00024   26.6  -0.5   23  120-142    12-34  (34)
  5 1eum_A Ferritin 1; ECFTNA, met  31.9 1.3E+02  0.0043   25.5   7.1   86  289-389    51-145 (165)
  6 2pco_A Latarcin-1, LTC-1; cont  26.6      32  0.0011   22.5   1.7   17   66-82      9-25  (26)
  7 3fbi_B Mediator of RNA polymer  25.9      24 0.00083   30.7   1.4   17  286-302    51-67  (130)
  8 1k8k_G P16, ARP2/3 complex 16   25.2      43  0.0015   29.8   2.9   24  280-303    91-114 (151)
  9 3dwl_G Actin-related protein 2  24.9      39  0.0013   30.1   2.6   26  278-303    90-115 (152)
 10 1r7c_A Genome polyprotein; mem  23.5      41  0.0014   22.8   1.9   13  333-345     5-17  (31)
 11 1rcd_A L ferritin; iron storag  22.7 1.9E+02  0.0066   24.8   6.7   87  289-389    60-156 (173)
 12 2cih_A Ferritin heavy chain; a  22.3 2.2E+02  0.0076   24.8   7.0   87  289-389    64-160 (183)
 13 1vlg_A Ferritin; TM1128, struc  21.5 2.6E+02  0.0088   23.8   7.1   85  289-389    65-159 (176)

No 1  
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=60.01  E-value=1.3e+02  Score=29.28  Aligned_cols=106  Identities=12%  Similarity=0.091  Sum_probs=70.4

Q ss_pred             HHHhhhcCCCCCChHHHHHHhHHHHHhhhhhccccccccCCCCchhHHHHHH-hhcchhHHHHHHHHHhhcchhhHHHH-
Q 016426           74 KLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEK-VGFLMGRDVASLVLEACISLRIWELV-  151 (390)
Q Consensus        74 ~lk~~l~~~~~~~~~~~~~~l~~fl~~~~~~~~~~~~~~~s~~~~~~~~i~~-~~~~ig~~v~~lv~r~~~~~~fw~~L-  151 (390)
                      +|.+...+.++.+.++.-..+..|.+.+...-++..|     +.|.+.++++ +|+--...+..=+... ....-|+.| 
T Consensus        41 ~l~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~i~~g-----g~~~~~~L~~aLg~~~A~~ll~~i~~~-~~~~~~~~L~  114 (329)
T 3hjl_A           41 KLFALAKDLESVPEEEIENIAEELLDEIKKAGIKIKK-----PEEFIENIKKVIPPTLAEKFRGILELG-DAEKILKEIE  114 (329)
T ss_dssp             HHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTTCCCSC-----HHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHhCCHHHHHHHHHHHhcc-ccCCHHHHHH
Confidence            4455666888999999999999999998887565555     2788887766 5555333232222211 122336444 


Q ss_pred             -------HHHHHhCCCCCCCchHHHHHHHhcCChhHHHHHHhhCCCC
Q 016426          152 -------ETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDL  191 (390)
Q Consensus       152 -------~~Li~~g~Ls~S~cP~Lv~~llEk~d~~LLqlcL~qfpDI  191 (390)
                             ..+|++      -+|+.++..+-+=+.+----.|.++|+=
T Consensus       115 ~~dp~~la~~i~~------EhPQtiAlILs~L~p~~AA~vL~~Lp~~  155 (329)
T 3hjl_A          115 KVDSRILASLLKN------EHPQTIALFLSQLSPKKSAEIIQNLPEE  155 (329)
T ss_dssp             TSCHHHHHHHHTT------SCHHHHHHHHTTSCHHHHHHHHHTSCHH
T ss_pred             CCCHHHHHHHHHh------CCHHHHHHHHHcCCHHHHHHHHHhCCHH
Confidence                   444433      3488888888888888888888888753


No 2  
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=53.48  E-value=5.5  Score=31.27  Aligned_cols=46  Identities=20%  Similarity=0.407  Sum_probs=35.7

Q ss_pred             hHHHHHHHhhhcCCCCCChHHHHHHhHHHHHhhhhhccccccccCCCCchhHHHHHHhhcchh
Q 016426           69 KKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMG  131 (390)
Q Consensus        69 ~~f~~~lk~~l~~~~~~~~~~~~~~l~~fl~~~~~~~~~~~~~~~s~~~~~~~~i~~~~~~ig  131 (390)
                      --|..+.|+.|++..  .=.+|+++|+-|-+.+-++               ..+++.|..++|
T Consensus        12 ~~Ff~kVK~~l~~~~--~Y~eFLk~lnlf~q~~Id~---------------~eLv~~V~~~lg   57 (75)
T 2ld7_B           12 SLFFDKVRKALRSAE--AYENFLRCLVIFNQEVISR---------------AELVQLVSPFLG   57 (75)
T ss_dssp             HHHHHHHHHHHCSHH--HHHHHHHHHHHHHTTCSCH---------------HHHHHHTHHHHT
T ss_pred             HHHHHHHHHHcCCHH--HHHHHHHHHHHhhhcCcCH---------------HHHHHHHHHHHc
Confidence            346678999997743  7889999999999886555               467788887776


No 3  
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.59  E-value=31  Score=27.54  Aligned_cols=27  Identities=7%  Similarity=-0.090  Sum_probs=24.0

Q ss_pred             CChhHHHHHHhhCCCCChHHHHHHHHH
Q 016426          176 KRSDLLCLCVKYSPDLGSSELLCILKY  202 (390)
Q Consensus       176 ~d~~LLqlcL~qfpDI~es~~~AcLK~  202 (390)
                      .|.+++.-.=|.||.||+.++..|+.-
T Consensus         9 ~d~qvfheLkQrFPEvPd~VVsqc~~q   35 (75)
T 2dae_A            9 IDFQVLHDLRQKFPEVPEVVVSRCMLQ   35 (75)
T ss_dssp             CCHHHHHHHHHHSSSSCHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence            578899999999999999999998754


No 4  
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=33.38  E-value=7  Score=26.57  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=18.4

Q ss_pred             HHHHHHhhcchhHHHHHHHHHhh
Q 016426          120 QGLIEKVGFLMGRDVASLVLEAC  142 (390)
Q Consensus       120 ~~~i~~~~~~ig~~v~~lv~r~~  142 (390)
                      +..|-|-|++.++.+-++|.||.
T Consensus        12 qa~ipk~grmlpqlvc~lvlrcs   34 (34)
T 1ssz_A           12 QAMIPKGGRMLPQLVCRLVLRCS   34 (34)
T ss_dssp             HHHCSSSCCCCHHHHHHHHTSCC
T ss_pred             HHHccccchhhHHHHHHHheecC
Confidence            44555678899999999999984


No 5  
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=31.90  E-value=1.3e+02  Score=25.51  Aligned_cols=86  Identities=12%  Similarity=0.075  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccCCCcCCCCCChHHHHHHHHHHhhcccceeeechhhHHHHHH-----
Q 016426          289 GKELMGLIRYLGKWLKKFERFPQAGPCPEASFGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRS-----  363 (390)
Q Consensus       289 ~~ev~~lLrYL~kW~~kys~~~~~~pcp~a~s~pgl~~~~~vPtl~qI~dWi~LlLDahFT~lVm~peake~L~~-----  363 (390)
                      .+|+..|++|+.+.    .+.+..++.+    .|-     .  ..+.+.+.+-..|+.--.+.-..+++.+.-+.     
T Consensus        51 ~~HA~~l~~~i~~~----gg~~~l~~i~----~p~-----~--~~~~~~e~l~~al~~E~~~~~~~~~l~~~a~~~~D~~  115 (165)
T 1eum_A           51 MTHMQRLFDYLTDT----GNLPRINTVE----SPF-----A--EYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYP  115 (165)
T ss_dssp             HHHHHHHHHHHHHT----TCCCCCCCBC----CCC-----C--CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHc----CCCcccCCCC----CCC-----C--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Confidence            37899999999873    3333332221    111     0  11345555555555433333334444443332     


Q ss_pred             ----HHHHHHHHHHHHHhhccHHHHHHHhc
Q 016426          364 ----IEGVVSTLASEARYCCSLANVVKRFG  389 (390)
Q Consensus       364 ----l~~~Vksq~~~~~~~~~~~~~~~~~~  389 (390)
                          ++.|++.|+.+.+....+.+.+++++
T Consensus       116 ~~~fl~~~l~eq~e~~~~l~~~l~~l~~~g  145 (165)
T 1eum_A          116 TFNFLQWYVSEQHEEEKLFKSIIDKLSLAG  145 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                67899999999999999999999886


No 6  
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=26.59  E-value=32  Score=22.48  Aligned_cols=17  Identities=41%  Similarity=0.472  Sum_probs=14.2

Q ss_pred             HhhhHHHHHHHhhhcCC
Q 016426           66 DSGKKFHAKLKRKLKDT   82 (390)
Q Consensus        66 ~~~~~f~~~lk~~l~~~   82 (390)
                      +--++|+..||+|++|.
T Consensus         9 eklKkf~~~lk~k~~~~   25 (26)
T 2pco_A            9 RKLKKLRNALKKKLKGE   25 (26)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            44689999999999885


No 7  
>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B
Probab=25.89  E-value=24  Score=30.72  Aligned_cols=17  Identities=18%  Similarity=0.556  Sum_probs=12.8

Q ss_pred             cCChHHHHHHHHHHHHH
Q 016426          286 KLNGKELMGLIRYLGKW  302 (390)
Q Consensus       286 dL~~~ev~~lLrYL~kW  302 (390)
                      -+.....+..|+||.+|
T Consensus        51 y~~d~~FinYLkYL~YW   67 (130)
T 3fbi_B           51 IWKSPNFKNYLKYLEYW   67 (130)
T ss_dssp             GGTSTHHHHHHHHGGGG
T ss_pred             cccCHHHHHHHHHHHHh
Confidence            46667777888888888


No 8  
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=25.24  E-value=43  Score=29.75  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             HhhhhccCChHHHHHHHHHHHHHH
Q 016426          280 LSSSISKLNGKELMGLIRYLGKWL  303 (390)
Q Consensus       280 Llp~LkdL~~~ev~~lLrYL~kW~  303 (390)
                      +.+.++.|+.++.-.||+||||=+
T Consensus        91 I~~~v~~L~~e~~D~LMKYiYkGm  114 (151)
T 1k8k_G           91 IEKAVQSLDKNGVDLLMKYIYKGF  114 (151)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhChhhhhHHHHHHHHhh
Confidence            578889999999999999998853


No 9  
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=24.92  E-value=39  Score=30.06  Aligned_cols=26  Identities=8%  Similarity=0.236  Sum_probs=22.0

Q ss_pred             hhHhhhhccCChHHHHHHHHHHHHHH
Q 016426          278 VILSSSISKLNGKELMGLIRYLGKWL  303 (390)
Q Consensus       278 ~~Llp~LkdL~~~ev~~lLrYL~kW~  303 (390)
                      .=+.+.++.|+.++.-.||+||||=+
T Consensus        90 sdI~~~v~~L~~~~~D~LMKYiYkGm  115 (152)
T 3dwl_G           90 ADIPAFVKECSTEEIDNIVNFIYRGL  115 (152)
T ss_dssp             GGHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence            33678889999999999999998753


No 10 
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=23.46  E-value=41  Score=22.78  Aligned_cols=13  Identities=31%  Similarity=0.225  Sum_probs=11.2

Q ss_pred             hHHHHHHHHHHhh
Q 016426          333 LEVIVQCLGLVLD  345 (390)
Q Consensus       333 l~qI~dWi~LlLD  345 (390)
                      +.+|-||+|.+|-
T Consensus         5 L~~iwdWvctvLs   17 (31)
T 1r7c_A            5 LRDIWDWICEVLS   17 (31)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6789999999984


No 11 
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Probab=22.69  E-value=1.9e+02  Score=24.76  Aligned_cols=87  Identities=11%  Similarity=-0.013  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccCCCcCCCCCChHHHHHHHHHHhhcccceeeechhhHHHHHH-----
Q 016426          289 GKELMGLIRYLGKWLKKFERFPQAGPCPEASFGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRS-----  363 (390)
Q Consensus       289 ~~ev~~lLrYL~kW~~kys~~~~~~pcp~a~s~pgl~~~~~vPtl~qI~dWi~LlLDahFT~lVm~peake~L~~-----  363 (390)
                      .+|+..|++|+.+.    .+.+..++.+    .|.     . ...+.+.+-+-..|+.--.+.-..-+.++.-..     
T Consensus        60 ~~HA~~l~~~i~~r----gg~~~l~~i~----~p~-----~-~~~~~~~e~le~aL~~E~~v~~~l~~l~~~a~~~~D~~  125 (173)
T 1rcd_A           60 KEHAEKLIEYQNQR----GGRVFLQSVE----KPE-----R-DDWANGLEALQTALKLQKSVNQALLDLHAVAADKSDPH  125 (173)
T ss_dssp             HHHHHHHHHHHHHH----TCCCCCCCCC----CCS-----C-SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHc----CCeeecCCCC----CCC-----c-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            37899999999875    3444443331    110     0 011334444444444333333333333333333     


Q ss_pred             ----HH-HHHHHHHHHHHhhccHHHHHHHhc
Q 016426          364 ----IE-GVVSTLASEARYCCSLANVVKRFG  389 (390)
Q Consensus       364 ----l~-~~Vksq~~~~~~~~~~~~~~~~~~  389 (390)
                          ++ .|++.|+.+.+....+.+.+++++
T Consensus       126 t~~fLe~~~l~eq~e~~~~l~~~l~~l~~~g  156 (173)
T 1rcd_A          126 MTDFLESPYLSESVETIKKLGDHITSLKKLW  156 (173)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                66 889999999999999999998876


No 12 
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Probab=22.28  E-value=2.2e+02  Score=24.78  Aligned_cols=87  Identities=9%  Similarity=-0.002  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccCCCcCCCCCChHHHHHHHHHHhhcccceeeechhhHHHHHH-----
Q 016426          289 GKELMGLIRYLGKWLKKFERFPQAGPCPEASFGLGLKACDWVPKLEVIVQCLGLVLDENFSSLVLLPEFQEELRS-----  363 (390)
Q Consensus       289 ~~ev~~lLrYL~kW~~kys~~~~~~pcp~a~s~pgl~~~~~vPtl~qI~dWi~LlLDahFT~lVm~peake~L~~-----  363 (390)
                      .+|+..|++|+.+.    .+.+..++.+    .|..      ...+.+.+-+-..|+---.+.-..-+.++.-..     
T Consensus        64 ~~HA~kl~~~i~~r----gg~~~l~~i~----~p~~------~~~~~~~e~le~aL~~Ek~v~~~l~~l~~~a~~~~D~~  129 (183)
T 2cih_A           64 REHAEKLMKLQNQR----GGRIFLQDIQ----KPDC------DDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPH  129 (183)
T ss_dssp             HHHHHHHHHHHHHH----TCCCCCCCCC----CCSC------SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHC----CCccccCCCC----CCCc------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            37899999999875    3333332221    1111      112334444444444333333223333333322     


Q ss_pred             ----HH-HHHHHHHHHHHhhccHHHHHHHhc
Q 016426          364 ----IE-GVVSTLASEARYCCSLANVVKRFG  389 (390)
Q Consensus       364 ----l~-~~Vksq~~~~~~~~~~~~~~~~~~  389 (390)
                          |+ .|++.|+.+-+....+.+.+++++
T Consensus       130 t~~fLe~~fl~eq~e~~~~l~~~l~~l~~~g  160 (183)
T 2cih_A          130 LCDFIETHYLNEQVKAIKELGDHVTNLRKMG  160 (183)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                66 599999999999999999999876


No 13 
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=21.46  E-value=2.6e+02  Score=23.76  Aligned_cols=85  Identities=9%  Similarity=0.025  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccCCCcCCCCC-ChHHHHHHHHHHhhcccceeeechhhHHHHHH----
Q 016426          289 GKELMGLIRYLGKWLKKFERFPQAGPCPEASFGLGLKACDWVP-KLEVIVQCLGLVLDENFSSLVLLPEFQEELRS----  363 (390)
Q Consensus       289 ~~ev~~lLrYL~kW~~kys~~~~~~pcp~a~s~pgl~~~~~vP-tl~qI~dWi~LlLDahFT~lVm~peake~L~~----  363 (390)
                      ..++..|.+|+...    .+.+...+.+            .+| ....+.+-+-..|+..-.+.-..+++.+.-..    
T Consensus        65 ~~HAd~l~eri~~l----Gg~~~l~~i~------------~p~~~~~~~~e~le~~l~~E~~v~~~~~~l~~~A~~~~D~  128 (176)
T 1vlg_A           65 LTHAMKFYEYIYER----GGRVELEAIE------------KPPSNWNGIKDAFEAALKHEEFVTQSIYNILELASEEKDH  128 (176)
T ss_dssp             HHHHHHHHHHHHHT----TCCCCCCCBC------------CCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHc----CCCeecCCCC------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            35677777777753    3333332221            111 12456677777787777777777776655544    


Q ss_pred             -----HHHHHHHHHHHHHhhccHHHHHHHhc
Q 016426          364 -----IEGVVSTLASEARYCCSLANVVKRFG  389 (390)
Q Consensus       364 -----l~~~Vksq~~~~~~~~~~~~~~~~~~  389 (390)
                           ++.|++.|+.+-+....+.+.+++++
T Consensus       129 ~t~~~l~~~l~eq~ee~~~l~~~l~~l~~~g  159 (176)
T 1vlg_A          129 ATVSFLKWFVDEQVEEEDQVREILDLLEKAN  159 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                 67899999999998888888888876


Done!