Query 016426
Match_columns 390
No_of_seqs 55 out of 57
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 13:23:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016426.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016426hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f05a1 a.59.1.1 (A:1-85) Sin3 51.7 9.1 0.00066 28.3 4.7 62 63-131 6-67 (85)
2 d1st6a6 a.24.9.1 (A:647-718) V 37.5 8.9 0.00065 28.4 2.5 59 175-233 9-68 (72)
3 d2f2ab1 a.182.1.2 (B:294-400) 33.2 51 0.0037 24.7 6.6 37 141-177 69-105 (107)
4 d1rw2a_ a.118.19.1 (A:) C-term 31.4 42 0.0031 27.3 6.1 56 47-102 32-89 (152)
5 d1k8kg_ a.118.13.1 (G:) Arp2/3 31.2 14 0.001 30.6 2.9 25 279-303 82-106 (143)
6 d2tpta1 a.46.2.1 (A:1-70) Thym 31.0 66 0.0048 22.2 6.4 60 77-159 9-68 (70)
7 d1vi0a2 a.121.1.1 (A:78-194) H 28.1 87 0.0063 22.1 6.9 74 87-174 3-80 (117)
8 d1brwa1 a.46.2.1 (A:1-70) Pyri 27.4 71 0.0052 21.9 6.0 59 78-159 9-67 (70)
9 d2gena2 a.121.1.1 (A:76-193) P 26.5 1E+02 0.0074 21.8 7.7 100 87-200 4-107 (118)
10 d2hyec2 a.118.17.1 (C:55-401) 26.5 1.4E+02 0.01 25.6 9.2 51 140-191 221-275 (347)
11 d1uoua1 a.46.2.1 (A:33-100) Th 25.1 83 0.0061 21.6 6.0 58 78-158 10-67 (68)
No 1
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.69 E-value=9.1 Score=28.32 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=42.4
Q ss_pred hHHHhhhHHHHHHHhhhcCCCCCChHHHHHHhHHHHHhhhhhccccccccCCCCchhHHHHHHhhcchh
Q 016426 63 YLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMG 131 (390)
Q Consensus 63 ~~~~~~~~f~~~lk~~l~~~~~~~~~~~~~~l~~fl~~~~~~~~~~~~~~~s~~~~~~~~i~~~~~~ig 131 (390)
+.-+|. .|..++|.++.+.| =.-.+|+.+++.|-+...+..|.+.+ ......+++.|+.+++
T Consensus 6 ~~~dA~-~yl~kVK~rf~~~p-~~Y~~FL~il~~f~~~~i~~~~~~~~-----~~~~~ev~~~V~~Lf~ 67 (85)
T d2f05a1 6 EFNNAI-SYVNKIKTRFLDHP-EIYRSFLEILHTYQKEQLHTKGRPFR-----GMSEEEVFTEVANLFR 67 (85)
T ss_dssp HHHHHH-HHHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHSSSSSSSSC-----CCCHHHHHHHHHHHTT
T ss_pred cHHHHH-HHHHHHHHHHccCH-HHHHHHHHHHHHHHHhhccccccccc-----cCCHHHHHHHHHHHHc
Confidence 344444 46668999998877 36789999999998886665454433 3455666777766654
No 2
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=37.54 E-value=8.9 Score=28.37 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=43.5
Q ss_pred cCChhHHHHHHhhCCCCChHHHHHHHHHhhCCCccchhh-hhhHHHHHHHHHHHHHHHhh
Q 016426 175 EKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGS-MGSVRMEWESQALLAIEKAS 233 (390)
Q Consensus 175 k~d~~LLqlcL~qfpDI~es~~~AcLK~FLs~~d~~~~~-m~sV~~~w~e~a~na~~~~~ 233 (390)
++.++.++..-.|.-.+.|-++-|..=...-|+++..++ |+.+++.|++++..=.+.++
T Consensus 9 ~~~ve~i~~aa~qle~L~PQVi~AariL~~~P~sK~a~En~e~~~~~W~~~v~~l~~~vD 68 (72)
T d1st6a6 9 KTTVEGIQATVKSARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVD 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888888888875555566555555 99999999998876555444
No 3
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=33.23 E-value=51 Score=24.66 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=28.0
Q ss_pred hhcchhhHHHHHHHHHhCCCCCCCchHHHHHHHhcCC
Q 016426 141 ACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKR 177 (390)
Q Consensus 141 ~~~~~~fw~~L~~Li~~g~Ls~S~cP~Lv~~llEk~d 177 (390)
+.++++-..-|..||+.|.||...+-+++..+++.|.
T Consensus 69 ~~i~~~~la~Li~lv~~g~Is~~~aK~vl~~~~~~g~ 105 (107)
T d2f2ab1 69 TKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGG 105 (107)
T ss_dssp SSCCHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTCS
T ss_pred CCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHHHcCC
Confidence 4456666677788888888888888888888777653
No 4
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.36 E-value=42 Score=27.34 Aligned_cols=56 Identities=9% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCCCCCCCcc--cCcchhhHHHhhhHHHHHHHhhhcCCCCCChHHHHHHhHHHHHhhh
Q 016426 47 SLVNPVSGWQ--ISEVDTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIG 102 (390)
Q Consensus 47 ~l~~p~s~w~--~s~~d~~~~~~~~~f~~~lk~~l~~~~~~~~~~~~~~l~~fl~~~~ 102 (390)
...||+.++. |+..|..+-++++.....+..=+.+-.+-+-+++.++|.-|-+..-
T Consensus 32 g~~nPv~DF~~ll~~~d~~~~~a~~qm~~vI~~lv~s~~~~~y~Ka~ecL~~lRe~ci 89 (152)
T d1rw2a_ 32 GSVNPAENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAI 89 (152)
T ss_dssp SSSCTTHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHccchhHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 4456888888 8888877788888777777755544444456788888887776643
No 5
>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]}
Probab=31.19 E-value=14 Score=30.58 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.2
Q ss_pred hHhhhhccCChHHHHHHHHHHHHHH
Q 016426 279 ILSSSISKLNGKELMGLIRYLGKWL 303 (390)
Q Consensus 279 ~Llp~LkdL~~~ev~~lLrYL~kW~ 303 (390)
=+.+.++.|+.+++-.||+||||=+
T Consensus 82 dI~~~v~~L~~~~~D~LMKYiYkG~ 106 (143)
T d1k8kg_ 82 DIEKAVQSLDKNGVDLLMKYIYKGF 106 (143)
T ss_dssp GHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHhHHHHHHHHHHhc
Confidence 3557789999999999999998754
No 6
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=31.00 E-value=66 Score=22.18 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=46.4
Q ss_pred hhhcCCCCCChHHHHHHhHHHHHhhhhhccccccccCCCCchhHHHHHHhhcchhHHHHHHHHHhhcchhhHHHHHHHHH
Q 016426 77 RKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIV 156 (390)
Q Consensus 77 ~~l~~~~~~~~~~~~~~l~~fl~~~~~~~~~~~~~~~s~~~~~~~~i~~~~~~ig~~v~~lv~r~~~~~~fw~~L~~Li~ 156 (390)
+|+.+-.+++.+|...+.+.++++ +- +.. -++..+.++-.+|-...+.......+.+
T Consensus 9 ~k~~~g~~Ls~~E~~~~~~~i~~g--~~---~d~------------------qi~afL~al~~kGet~~Ei~~~~~aMr~ 65 (70)
T d2tpta1 9 RKKRDGHALSDEEIRFFINGIRDN--TI---SEG------------------QIAALAMTIFFHDMTMPERVSLTMAMRD 65 (70)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHT--CS---CHH------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCcCHHHHHHHHHHHHcC--Cc---hHH------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444555669999999999999987 21 111 4888899999999888888888888888
Q ss_pred hCC
Q 016426 157 HGL 159 (390)
Q Consensus 157 ~g~ 159 (390)
+|-
T Consensus 66 sG~ 68 (70)
T d2tpta1 66 SGT 68 (70)
T ss_dssp TSB
T ss_pred hCC
Confidence 774
No 7
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=28.10 E-value=87 Score=22.10 Aligned_cols=74 Identities=7% Similarity=0.011 Sum_probs=42.7
Q ss_pred hHHHHHHhHHHHHhhhhhccccccccCCCCchhHHHHHHhhcchhHHHHHHHHHhhcchhhH----HHHHHHHHhCCCCC
Q 016426 87 KDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIW----ELVETLIVHGLVDH 162 (390)
Q Consensus 87 ~~~~~~~l~~fl~~~~~~~~~~~~~~~s~~~~~~~~i~~~~~~ig~~v~~lv~r~~~~~~fw----~~L~~Li~~g~Ls~ 162 (390)
++++..++..|+..+.+. ..+.++++..+... +..+-.-+. ....+|. +.+.+.++.|.++-
T Consensus 3 ~e~L~~~i~~~~~~~~~~-----------~~~~~i~~~E~~~~-~~~~~~~i~--~~~~~~~~~~~~ii~~g~~~G~ir~ 68 (117)
T d1vi0a2 3 KEKLALVISKHFSLLAGD-----------HNLAIVTQLELRQS-NLELRQKIN--EILKGYLNILDGILTEGIQSGEIKE 68 (117)
T ss_dssp HHHHHHHHHHHHHHHHTC-----------HHHHHHHHTTTCCC-SHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTCBCT
T ss_pred HHHHHHHHHHHHHHHHhC-----------cchHHhHHHHHhcC-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCccc
Confidence 567778888888776665 44555555444222 222221111 1122232 66667778888887
Q ss_pred CCchHHHHHHHh
Q 016426 163 SSYSNLVTRLAT 174 (390)
Q Consensus 163 S~cP~Lv~~llE 174 (390)
...|.++..++-
T Consensus 69 d~d~~~~a~~i~ 80 (117)
T d1vi0a2 69 GLDVRLARQMIF 80 (117)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 677888887665
No 8
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.41 E-value=71 Score=21.94 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=45.1
Q ss_pred hhcCCCCCChHHHHHHhHHHHHhhhhhccccccccCCCCchhHHHHHHhhcchhHHHHHHHHHhhcchhhHHHHHHHHHh
Q 016426 78 KLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVH 157 (390)
Q Consensus 78 ~l~~~~~~~~~~~~~~l~~fl~~~~~~~~~~~~~~~s~~~~~~~~i~~~~~~ig~~v~~lv~r~~~~~~fw~~L~~Li~~ 157 (390)
|+.+-.+++.+|...+.+.++.+ +- +.. -+|..+.++-.+|--..+.......+.++
T Consensus 9 k~~~g~~Ls~~E~~~~~~~i~~g--~~---s~~------------------qi~afL~al~~kG~t~~Ei~~~~~aM~~s 65 (70)
T d1brwa1 9 KKRDGKALTKEEIEWIVRGYTNG--DI---PDY------------------QMSALAMAIYFRGMTEEETAALTMAMVQS 65 (70)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHTT--SS---CHH------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCHHHHHHHHHHHHcC--CC---CHH------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33355569999999999999876 11 111 47889999999998888888888888887
Q ss_pred CC
Q 016426 158 GL 159 (390)
Q Consensus 158 g~ 159 (390)
|-
T Consensus 66 g~ 67 (70)
T d1brwa1 66 GE 67 (70)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 9
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.50 E-value=1e+02 Score=21.80 Aligned_cols=100 Identities=9% Similarity=0.113 Sum_probs=57.2
Q ss_pred hHHHHHHhHHHHHhhhhhccccccccCCCCchhHHHHH-Hhhcc---hhHHHHHHHHHhhcchhhHHHHHHHHHhCCCCC
Q 016426 87 KDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIE-KVGFL---MGRDVASLVLEACISLRIWELVETLIVHGLVDH 162 (390)
Q Consensus 87 ~~~~~~~l~~fl~~~~~~~~~~~~~~~s~~~~~~~~i~-~~~~~---ig~~v~~lv~r~~~~~~fw~~L~~Li~~g~Ls~ 162 (390)
+++++.++..|++-+.+. +...|.++. ....+ ....+... +......+.+.+.+-++.|.+.
T Consensus 4 ~e~lr~~v~~~~~~v~~~-----------p~~~r~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~i~~g~~~G~~r- 69 (118)
T d2gena2 4 EETVRLLVTSYIDWVVAN-----------PDWARFILHSRGRVEAGELGERLRAD--NQAHFARIHAALAGYRAEGLFR- 69 (118)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHSTTHHHHHHH--HHHHHHHHHHHHHHHHHTTCBC-
T ss_pred HHHHHHHHHHHHHHHHhC-----------hHHHHHHHHHhhcccCccHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCC-
Confidence 678888999999887776 344454432 11111 22222222 1222233336677777788887
Q ss_pred CCchHHHHHHHhcCChhHHHHHHhhCCCCChHHHHHHH
Q 016426 163 SSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCIL 200 (390)
Q Consensus 163 S~cP~Lv~~llEk~d~~LLqlcL~qfpDI~es~~~AcL 200 (390)
..-|+++..++--.=..+++..+..-.+.|.+++...|
T Consensus 70 ~~~~~~~~~~i~G~~~~~~~~wl~~~~~~~~e~~~e~l 107 (118)
T d2gena2 70 EMPDDCFASVVIGPAHDLARQWLAGRTRVALADCRELL 107 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCCSSCGGGGHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 45588888877633334555566666666666555544
No 10
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.48 E-value=1.4e+02 Score=25.64 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=33.6
Q ss_pred HhhcchhhHHHHHHHHHhCCCCCCCchHH----HHHHHhcCChhHHHHHHhhCCCC
Q 016426 140 EACISLRIWELVETLIVHGLVDHSSYSNL----VTRLATEKRSDLLCLCVKYSPDL 191 (390)
Q Consensus 140 r~~~~~~fw~~L~~Li~~g~Ls~S~cP~L----v~~llEk~d~~LLqlcL~qfpDI 191 (390)
+.+.....+..|...++..++.--. +.+ +..++++++.+.|+.+++.+.-+
T Consensus 221 ~~~l~~~t~~~l~~~l~~~Li~~~~-~~il~~~~~~ll~~~~~~~L~~ly~L~~r~ 275 (347)
T d2hyec2 221 ITYLDHSTQKPLIACVEKQLLGEHL-TAILQKGLDHLLDENRVPDLAQMYQLFSRV 275 (347)
T ss_dssp TTTSCTTTHHHHHHHHHHHHTTTCS-HHHHHTTHHHHHTTTCHHHHHHHHHHHHHS
T ss_pred HHhccHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHhhhc
Confidence 3456666777777777777765333 222 45678889999888887755433
No 11
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.06 E-value=83 Score=21.58 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=42.9
Q ss_pred hhcCCCCCChHHHHHHhHHHHHhhhhhccccccccCCCCchhHHHHHHhhcchhHHHHHHHHHhhcchhhHHHHHHHHHh
Q 016426 78 KLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVH 157 (390)
Q Consensus 78 ~l~~~~~~~~~~~~~~l~~fl~~~~~~~~~~~~~~~s~~~~~~~~i~~~~~~ig~~v~~lv~r~~~~~~fw~~L~~Li~~ 157 (390)
|+.+-.+++.+|+..+++.+++. +- +.. -|+..+.++-.+|.-..+.-.....++++
T Consensus 10 k~~~g~~Ls~~E~~~~~~~i~~g--~~---s~~------------------qi~afL~al~~kG~t~~Ei~~~t~aM~~s 66 (68)
T d1uoua1 10 MKRDGGRLSEADIRGFVAAVVNG--SA---QGA------------------QIGAMLMAIRLRGMDLEETSVLTQALAQS 66 (68)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHT--CS---CHH------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCHHHHHHHHHHHHcC--CC---CHH------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33455569999999999999886 11 111 47888888888888877777777777776
Q ss_pred C
Q 016426 158 G 158 (390)
Q Consensus 158 g 158 (390)
|
T Consensus 67 G 67 (68)
T d1uoua1 67 G 67 (68)
T ss_dssp S
T ss_pred C
Confidence 6
Done!