Citrus Sinensis ID: 016428
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FYG3 | 493 | Probable plastidic glucos | yes | no | 0.994 | 0.787 | 0.719 | 1e-164 | |
| Q2V4B9 | 495 | Probable plastidic glucos | no | no | 0.984 | 0.775 | 0.665 | 1e-145 | |
| Q0WVE9 | 524 | Probable plastidic glucos | no | no | 0.835 | 0.622 | 0.445 | 3e-76 | |
| Q56ZZ7 | 546 | Plastidic glucose transpo | no | no | 0.889 | 0.635 | 0.4 | 2e-68 | |
| Q9FRL3 | 487 | Sugar transporter ERD6-li | no | no | 0.797 | 0.638 | 0.315 | 6e-35 | |
| P87110 | 557 | Myo-inositol transporter | yes | no | 0.930 | 0.651 | 0.294 | 7e-35 | |
| Q93YP9 | 488 | Sugar transporter ERD6-li | no | no | 0.782 | 0.625 | 0.322 | 9e-35 | |
| P46333 | 461 | Probable metabolite trans | yes | no | 0.771 | 0.652 | 0.323 | 2e-34 | |
| Q9ZQP6 | 580 | Probable inositol transpo | no | no | 0.812 | 0.546 | 0.307 | 1e-33 | |
| C0SPB2 | 457 | Putative metabolite trans | no | no | 0.766 | 0.654 | 0.312 | 2e-33 |
| >sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 578 bits (1490), Expect = e-164, Method: Compositional matrix adjust.
Identities = 282/392 (71%), Positives = 330/392 (84%), Gaps = 4/392 (1%)
Query: 1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
M G QRE S MYKRTSSRD S DVE+++ L++N E+E TNPSWK S PHVLVAT+
Sbjct: 1 MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60
Query: 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS SG +ADG GRR
Sbjct: 61 SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120
Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
RAFQ+CALPMI+GA +S + +L MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180
Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
G+FIQIATCLGLM +L IGIPV I GWWR+CFW+S +PAA+L L M CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240
Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
G+ AEAEAEFE+LLGGSHVK+++AEL K LD+ D+ D+V ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300
Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360
Query: 357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
SF MA +MA+QV A+SSY+P ++L LSVGG
Sbjct: 361 SFIGMAAAMALQVGATSSYLPHFSALCLSVGG 392
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/389 (66%), Positives = 305/389 (78%), Gaps = 5/389 (1%)
Query: 1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
M GR + KR S++ S D ET + GT + NPSWK S PHVLVA+L+S
Sbjct: 11 MRGRHID-----KRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTS 65
Query: 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
LFGYHLGVVNE LESIS+DLGF+GNT+AEGLVVS CLGGAFIGS SG +ADGVGRRRA
Sbjct: 66 LLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRA 125
Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
FQL ALPMI+GAS+SA+T +L+GMLLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+
Sbjct: 126 FQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGS 185
Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
QIATC+GL+GSL GIP K+ GWWRICFW+S VPAA+L + M C ESP WL+K+GR
Sbjct: 186 STQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGR 245
Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
AEAEA FEKLLGGS+VK+++AEL K DRGDD D K ELL+GR FRVVFIGSTLFALQ
Sbjct: 246 AAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQ 305
Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
QLSGINA+FYFSS+VFK AG+ S AN+ VG+ NLLGS VA+VLMDKLGRK LL SF
Sbjct: 306 QLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAG 365
Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGL 389
MAVS+ +Q A +S +L+LSVGG+
Sbjct: 366 MAVSLGLQAIAYTSLPSPFGTLFLSVGGM 394
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 217/328 (66%), Gaps = 2/328 (0%)
Query: 46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
W +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct: 76 WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135
Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
++G + D G RR FQ+ +P+I+GA +SA +L +L GRF+VG G+G+ + +Y
Sbjct: 136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195
Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
++EV+P RG+ G QI TCLG++ SLL+GIP ++ WWR +V+ +P +L L M
Sbjct: 196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255
Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
F ESP WL K GR +A+ + GGS V+ ++ + + + ++ ++ ELL
Sbjct: 256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315
Query: 285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 343
H RV FIG +LF LQQ +GIN + YFSS F++ G++SG A+++VG+ N G++ A
Sbjct: 316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375
Query: 344 LMDKLGRKALLQWSFFSMAVSMAIQVAA 371
L+DK GRK LL S+ MAVSM + V A
Sbjct: 376 LIDKQGRKKLLIGSYLGMAVSMFLIVYA 403
|
May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/355 (40%), Positives = 211/355 (59%), Gaps = 8/355 (2%)
Query: 9 SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
S + R+ SS D EE L G P V VA L + LFGYHLG
Sbjct: 72 SSVKARSVRAQASSDGDEEEAIPLRSEGKSSGTV-------LPFVGVACLGAILFGYHLG 124
Query: 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
VVN LE ++ DLG NT+ +G +VS L GA +GS G +AD GR R FQL A+P+
Sbjct: 125 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPL 184
Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
IGA + AT +++ M++GR + G G+G+ + LY++E+SP +RG G+ Q+ C+
Sbjct: 185 AIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICI 244
Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
G++ +L+ G+P+ WWR F V+++P+ +L + M F ESP WL ++G+ +EAE
Sbjct: 245 GILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAI 304
Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
+ L G V + +LS +G + +L R+++VV +G+ LF QQL+GINA+
Sbjct: 305 KTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAV 364
Query: 309 FYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 362
Y+S+SVF+SAG+ S + A+ VG +N+ G+ VA LMDK+GRK+LL SF MA
Sbjct: 365 VYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMA 419
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May be involved in the efflux of glucose towards the cytosol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 174/323 (53%), Gaps = 12/323 (3%)
Query: 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
VL+ L FG+ G + +I+ DLG T++E V S+ GA +G+ SG I
Sbjct: 52 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 108
Query: 112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
A+ +GR+ + + A+P IIG + ++ + +GR + G G+G+ +Y+ E++P
Sbjct: 109 AEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 168
Query: 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
+RG G+ Q++ +G+M + L+G+ V WRI + I+P +L + F ES
Sbjct: 169 QNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIPES 223
Query: 232 PHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRV 289
P WL K G T E E + L G + + + E+ + + + V+F +L R++
Sbjct: 224 PRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFP 283
Query: 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKL 348
+ +G L LQQL GIN + ++SS++F+SAG++S A F VG ++ + ++ L+DK
Sbjct: 284 LMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKA 343
Query: 349 GRKALLQWSFFSMAVSMAIQVAA 371
GR+ LL S M +S+ I AA
Sbjct: 344 GRRLLLTISSVGMTISLVIVAAA 366
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P87110|ITR2_SCHPO Myo-inositol transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=itr2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 195/401 (48%), Gaps = 38/401 (9%)
Query: 18 RDRSSTFDVEETTALVQNGTEVENTNPS-----------WKLSFPHVLVATLSSFLFGYH 66
R+ S + EE A EV + N W LS VA +S LFGY
Sbjct: 43 REIPSLPNEEEANATDPQANEVADENGEGFEAEKISSWIWVLS----AVAGISGLLFGYD 98
Query: 67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126
GV++ L + DLG ++ + L+ S A I +T SGW+AD VGR+R LCA
Sbjct: 99 TGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLL-LCAD 157
Query: 127 PM-IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA 185
+ +IG+ I A +RN+ M++GRF+VG G+GL + +Y+TE++P +RG +
Sbjct: 158 AIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVF 217
Query: 186 TCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE 245
G + + + + + WRI F + PA +++ + ESP +L + +
Sbjct: 218 ITGGQLIAYSLNAAFEHVHQGWRIMFGIGAAPALGQLISLFWTPESPRYLLRHNHVEKV- 276
Query: 246 AEFEKLLGGSHVKSSLAELS-KLDRGDDGDIVKFEELLYGRHF--------------RVV 290
K+L H ++ AE++ K+ +G V F E +HF R +
Sbjct: 277 ---YKILSRIHPEAKPAEIAYKVSLIQEGVKVDFPEGNKFQHFFHSLKVLFTVPSNRRSL 333
Query: 291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLG 349
FIG L QQ SG NAI YFS+ +F+S G + ++ ++ VG N + ++VA + +D++G
Sbjct: 334 FIGCFLQWFQQFSGTNAIQYFSAIIFQSVGFKNSISVSIVVGATNFVFTIVAFMFIDRIG 393
Query: 350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGLY 390
R+ +L + M +A+ A + ++P + + G Y
Sbjct: 394 RRRILLCTSAVMIAGLAL-CAIAYHFLPADTTQNTNSGWQY 433
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Transporter for myo-inositol. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 175/329 (53%), Gaps = 24/329 (7%)
Query: 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
VL+ L FG+ G + +I+ DLG T++E V S+ GA +G+ SG I
Sbjct: 53 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 109
Query: 112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
A+ VGR+ + + A+P IIG + ++ + +GR + G G+G+ +Y+ E++P
Sbjct: 110 AEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 169
Query: 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
+RG G+ Q++ +G+M + L+G+ V WRI + ++P +L + F ES
Sbjct: 170 QTMRGALGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGVLPCTLLIPGLFFIPES 224
Query: 232 PHWLYKKGRTAEAEAEFEKLLG--------GSHVKSSLAELSKLDRGDDGDIVKFEELLY 283
P WL K G T + E + L G + +K S+A SK V+F +L
Sbjct: 225 PRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSA------VRFVDLKR 278
Query: 284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAM 342
R++ + +G L ALQQL GIN + ++SS++F+SAG+ SS +A VG+ ++ + +A
Sbjct: 279 RRYYFPLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIAT 338
Query: 343 VLMDKLGRKALLQWSFFSMAVSMAIQVAA 371
L+DK GR+ LL S M +S+ I A
Sbjct: 339 WLVDKAGRRLLLMISSIGMTISLVIVAVA 367
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 170/315 (53%), Gaps = 14/315 (4%)
Query: 58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117
L L+GY GV++ L I+ D+ TL EGLVVSM L GA GS LSG +D GR
Sbjct: 16 LGGLLYGYDTGVISGALLFINNDIPLT--TLTEGLVVSMLLLGAIFGSALSGTCSDRWGR 73
Query: 118 RRAFQLCALPMIIGASISATTRNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRG 176
R+ + ++ IIGA A ++ IGML+ R ++G +G + +Y++E++P +RG
Sbjct: 74 RKVVFVLSIIFIIGALACAFSQT-IGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132
Query: 177 TYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLY 236
T G + G++ + ++ WR ++ VPA +L + + F ESP WL
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAAVPAVLLLIGIAFMPESPRWLV 191
Query: 237 KKGRTAEAEAEFEKLLGGSHVKSSLA-ELSKLDRGDDGDIVKFEELLYGRHFR-VVFIGS 294
K+G +E E +++ +H + EL+++ +G+ +L + R ++ IG
Sbjct: 192 KRG----SEEEARRIMNITHDPKDIEMELAEMKQGEAEKKETTLGVLKAKWIRPMLLIGV 247
Query: 295 TLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRK 351
L QQ GIN + Y++ ++F AGL +S L + +GI N++ + AM+L+D++GRK
Sbjct: 248 GLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGILNVIMCITAMILIDRVGRK 307
Query: 352 ALLQWSFFSMAVSMA 366
LL W + +S+A
Sbjct: 308 KLLIWGSVGITLSLA 322
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 170/341 (49%), Gaps = 24/341 (7%)
Query: 51 PHVLVATLSS----FLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGS 105
P+++ LS+ LFGY+ GV+ L I + G + T + ++VSM + GA +G+
Sbjct: 24 PYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGA 83
Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
+ GW D GRR + + + ++GA + ++LGR +VG G+G+ + LY
Sbjct: 84 AIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLY 143
Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
++E+SP +RG + + G S LI + G WR VS +PA I M
Sbjct: 144 ISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLM 203
Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD--DGDIV--KFEEL 281
+ ESP WLY+ R AE+ E++ V++ +A L + R + D DI+ F +
Sbjct: 204 LTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADEDIIGHTFSDK 263
Query: 282 LYG-------RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-----LANVF 329
L G RH G T+ QQ GIN + Y+S ++ + AG +S LA +
Sbjct: 264 LRGALSNPVVRHGLAA--GITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALIT 321
Query: 330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370
G+ N +GSVV+M+ +D+ GR+ L+ S F + + I A
Sbjct: 322 SGL-NAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAA 361
|
Plasma membrane inositol-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 163/310 (52%), Gaps = 11/310 (3%)
Query: 62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF 121
L+GY GV++ + + +LG N T EGLVVS L GA +GS +G + D GR++A
Sbjct: 19 LYGYDTGVISGAILFMKKELGLNAFT--EGLVVSSLLVGAILGSGAAGKLTDRFGRKKAI 76
Query: 122 QLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF 181
AL IG A N M+L R ++G +G T+ LY++E++P RG +
Sbjct: 77 MAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSL 136
Query: 182 IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRT 241
Q+ +G++ S ++ + A WR ++ VP+ +L + ++F ESP WL+ G
Sbjct: 137 NQLMITVGILLSYIVNYIFAD-AEAWRWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEE 195
Query: 242 AEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI-GSTLFALQ 300
++A+ EKL G + + ++ + ++ D+G + + L+ R I G L LQ
Sbjct: 196 SKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKE----LFDPWVRPALIAGLGLAFLQ 251
Query: 301 QLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS 357
Q G N I Y++ F + G +S L V +G N+L ++VA+ ++DK+GRK LL +
Sbjct: 252 QFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPLLLFG 311
Query: 358 FFSMAVSMAI 367
M +S+ +
Sbjct: 312 NAGMVISLIV 321
|
Bacillus subtilis (strain 168) (taxid: 224308) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| 27261731 | 489 | sugar transporter [Citrus unshiu] | 0.997 | 0.795 | 0.997 | 0.0 | |
| 255546433 | 508 | sugar transporter, putative [Ricinus com | 0.997 | 0.765 | 0.776 | 1e-178 | |
| 225445194 | 488 | PREDICTED: probable plastidic glucose tr | 0.994 | 0.795 | 0.776 | 1e-177 | |
| 224142161 | 489 | predicted protein [Populus trichocarpa] | 0.997 | 0.795 | 0.771 | 1e-172 | |
| 357500677 | 490 | Sugar transporter [Medicago truncatula] | 0.997 | 0.793 | 0.733 | 1e-167 | |
| 449449521 | 490 | PREDICTED: probable plastidic glucose tr | 0.994 | 0.791 | 0.755 | 1e-164 | |
| 15220399 | 493 | putative plastidic glucose transporter 2 | 0.994 | 0.787 | 0.719 | 1e-162 | |
| 356520521 | 486 | PREDICTED: probable plastidic glucose tr | 0.979 | 0.786 | 0.738 | 1e-162 | |
| 356531285 | 486 | PREDICTED: probable plastidic glucose tr | 0.976 | 0.783 | 0.737 | 1e-162 | |
| 42570243 | 494 | putative plastidic glucose transporter 2 | 0.994 | 0.785 | 0.717 | 1e-161 |
| >gi|27261731|gb|AAN86062.1| sugar transporter [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/389 (99%), Positives = 389/389 (100%)
Query: 1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS
Sbjct: 1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
Query: 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA
Sbjct: 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA
Sbjct: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR
Sbjct: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS
Sbjct: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGL 389
MAVSMAIQVAASSSYIPGSASLYLSVGG+
Sbjct: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGM 389
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546433|ref|XP_002514276.1| sugar transporter, putative [Ricinus communis] gi|223546732|gb|EEF48230.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 302/389 (77%), Positives = 341/389 (87%)
Query: 1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
MWGRQRE+ MYKR SRD + D+E+ +AL+QN + E TNPSW LSFPHV+ AT+SS
Sbjct: 14 MWGRQRESKSMYKRMPSRDYTKNSDIEDDSALIQNNMDAEVTNPSWSLSFPHVVAATISS 73
Query: 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
FLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS CLGGAFIGS SGWIADGVGRRRA
Sbjct: 74 FLFGYHLGVVNEPLESISIDLGFNGNTLAEGLVVSTCLGGAFIGSLFSGWIADGVGRRRA 133
Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
FQLCALPMIIGAS+SATT L GML+GRF+VGTGMGLGP VAALYVTEVSP FVRGTYG+
Sbjct: 134 FQLCALPMIIGASVSATTTTLAGMLVGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGS 193
Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
FIQIATCLGLMG+L IGIPV+EI GWWRICFWVS +PA +L LAMVFC ESPHWLYK+GR
Sbjct: 194 FIQIATCLGLMGALFIGIPVREINGWWRICFWVSAIPAGLLALAMVFCVESPHWLYKQGR 253
Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
+AEAE EFE+LLGG+HV+ ++ ELSK+DRGD+ D + ELLYGRHFRVVFIGSTLFALQ
Sbjct: 254 SAEAEIEFERLLGGAHVRYAIQELSKVDRGDNIDNITLSELLYGRHFRVVFIGSTLFALQ 313
Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
QLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AMVLMD+LGRK LL WSFF
Sbjct: 314 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLTGSLAAMVLMDRLGRKVLLLWSFFG 373
Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGL 389
MAVSM +QVA +SSY+ GS +L+LSVGG+
Sbjct: 374 MAVSMGLQVAGASSYMAGSGALFLSVGGM 402
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445194|ref|XP_002284229.1| PREDICTED: probable plastidic glucose transporter 2 [Vitis vinifera] gi|297738801|emb|CBI28046.3| unnamed protein product [Vitis vinifera] gi|310877904|gb|ADP37183.1| putative monosaccharide transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/389 (77%), Positives = 345/389 (88%), Gaps = 1/389 (0%)
Query: 1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
MWGRQ EAS+ YKR SSRD + D+EE++AL QNG E TNPSWKLS PH++VAT+SS
Sbjct: 1 MWGRQGEASVTYKRVSSRDNTKV-DMEESSALFQNGMGQEITNPSWKLSLPHIIVATISS 59
Query: 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
FLFGYHLGVVNEPLE+I+LDLGF+GNTLAEGLVVS CLGGAFIGS SGWIADG+GRRRA
Sbjct: 60 FLFGYHLGVVNEPLETIALDLGFSGNTLAEGLVVSTCLGGAFIGSLFSGWIADGIGRRRA 119
Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
FQLCALPMIIGAS+SATT++L GML+GRF+VGTGMG+GP VA+LYVTEVSP FVRGTYG+
Sbjct: 120 FQLCALPMIIGASVSATTKSLEGMLIGRFLVGTGMGVGPPVASLYVTEVSPAFVRGTYGS 179
Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
FIQ+ATCLGLMG+L IGIPVK I GWWRICFW++ VPA IL AM+FCAESPHWLYKKGR
Sbjct: 180 FIQLATCLGLMGALFIGIPVKAIIGWWRICFWIATVPAGILAFAMMFCAESPHWLYKKGR 239
Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
AEAEAEFEKLLGGSHVK ++A+L K DRGD+ D VK ELLYGRHFRVVFIGSTLFALQ
Sbjct: 240 IAEAEAEFEKLLGGSHVKFAMADLHKSDRGDETDAVKLSELLYGRHFRVVFIGSTLFALQ 299
Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
QLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AM+LMDKLGRKALL WSFF
Sbjct: 300 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLSGSITAMILMDKLGRKALLVWSFFG 359
Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGL 389
MAV+M++QVA +SS+I GS +++LSV G+
Sbjct: 360 MAVAMSVQVAGASSFISGSGAVFLSVSGM 388
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142161|ref|XP_002324427.1| predicted protein [Populus trichocarpa] gi|222865861|gb|EEF02992.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/389 (77%), Positives = 336/389 (86%)
Query: 1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
M G + MYKR SSRD + DVE+ + + Q+ + E TNPSW+LSFPHVL AT+S+
Sbjct: 1 MRGHRTGEYSMYKRMSSRDFTVAADVEDNSVVSQSIPDQEITNPSWRLSFPHVLAATISA 60
Query: 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS CLGGA IGS SGWIADG+GRRRA
Sbjct: 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSTCLGGALIGSLFSGWIADGIGRRRA 120
Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
FQLCALPMI+GASISATT+ L GMLLGR +VGTGMGLGP V++LYVTEVSP FVRGTYG+
Sbjct: 121 FQLCALPMIVGASISATTKTLAGMLLGRLLVGTGMGLGPPVSSLYVTEVSPSFVRGTYGS 180
Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
FIQIATCLGLM +L IGIPV+EIAGWWRICFWVS VPA IL L+M+FCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALFIGIPVREIAGWWRICFWVSTVPAGILALSMMFCAESPHWLYKQGR 240
Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
TAEAEAEFE+LLGG+HVK ++ ELSKLDRGDD D V F ELLYGR FRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFERLLGGAHVKFAMQELSKLDRGDDSDDVHFSELLYGRCFRVVFIGSTLFALQ 300
Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
QLSGINAIFYFSS+VFK+AG+ S LANVFVGIANL GSV+AMVLMDK+GRK LL WSF
Sbjct: 301 QLSGINAIFYFSSTVFKNAGVPSDLANVFVGIANLSGSVIAMVLMDKMGRKVLLLWSFSG 360
Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGL 389
MAVSM +QV A+SS + GS +LYLSVGG+
Sbjct: 361 MAVSMGLQVVAASSNMLGSGTLYLSVGGM 389
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357500677|ref|XP_003620627.1| Sugar transporter [Medicago truncatula] gi|355495642|gb|AES76845.1| Sugar transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 286/390 (73%), Positives = 331/390 (84%), Gaps = 1/390 (0%)
Query: 1 MWGRQREASMMYKRTSSRDRSS-TFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLS 59
MWG RE+S++YKRT S+D S+ DVEE L+ N + E TNPSWKLS PHVLVAT++
Sbjct: 1 MWGHHRESSIVYKRTPSKDNSNMEEDVEENLDLLDNFIDKETTNPSWKLSLPHVLVATIT 60
Query: 60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR 119
SFLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS+CLGGA G LSGWIAD VGRRR
Sbjct: 61 SFLFGYHLGVVNEPLESISVDLGFNGNTLAEGLVVSICLGGALFGCLLSGWIADAVGRRR 120
Query: 120 AFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG 179
AFQLCALPMIIGA++SA T NL GML+GR VGTG+GLGP VAALYVTEVSP FVRGTYG
Sbjct: 121 AFQLCALPMIIGAAMSAATNNLFGMLVGRLFVGTGLGLGPPVAALYVTEVSPAFVRGTYG 180
Query: 180 AFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKG 239
A IQIATC G++GSL IGIPVKEI+GWWR+CFWVS +PAAIL LAMVFCAESPHWLYK+G
Sbjct: 181 ALIQIATCFGILGSLFIGIPVKEISGWWRVCFWVSTIPAAILALAMVFCAESPHWLYKQG 240
Query: 240 RTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL 299
RTAEAEAEFE+LLG S K ++++LSK+DRG+D D VKF ELL+G H +VVFIGSTLFAL
Sbjct: 241 RTAEAEAEFERLLGVSEAKFAMSQLSKVDRGEDTDTVKFSELLHGHHSKVVFIGSTLFAL 300
Query: 300 QQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 359
QQLSGINA+FYFSS+VFKSAG+ S ANV +G+ANL GS+++ LMDKLGRK LL WSFF
Sbjct: 301 QQLSGINAVFYFSSTVFKSAGVPSDFANVCIGVANLTGSIISTGLMDKLGRKVLLFWSFF 360
Query: 360 SMAVSMAIQVAASSSYIPGSASLYLSVGGL 389
MA+SM IQ +S+ +P + +LYLSVGG+
Sbjct: 361 GMAISMIIQATGASTLLPTAGALYLSVGGM 390
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449521|ref|XP_004142513.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus] gi|449522117|ref|XP_004168074.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 293/388 (75%), Positives = 330/388 (85%)
Query: 1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
MW R+REA YKR S +D S + D+E+ +A +QNG + E +NPSW LS PHVLVATL+S
Sbjct: 1 MWDRKREAFSTYKRLSLKDNSDSIDMEDNSAHLQNGKDFEASNPSWSLSLPHVLVATLTS 60
Query: 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
FLFGYHLGVVNEPLE IS DLGFNGNT+AEGLVVS CLGGA IGS LSGWIADGVGRRRA
Sbjct: 61 FLFGYHLGVVNEPLEIISADLGFNGNTMAEGLVVSTCLGGALIGSLLSGWIADGVGRRRA 120
Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
FQL ALPMI+GA +SA T+ L GMLLGR VGTGMGLGP VA+LYVTE+SP FVRGTYG+
Sbjct: 121 FQLSALPMILGAGMSAMTKTLAGMLLGRLFVGTGMGLGPPVASLYVTEISPAFVRGTYGS 180
Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
FIQIATCLGLM +LLIGIPVK+IA WWR CFWVS +PAA+L LAMVFCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALLIGIPVKDIADWWRTCFWVSTIPAALLALAMVFCAESPHWLYKQGR 240
Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
T EAE EFEKLLGGSHVKS+LAELSK DRGD+ D VK ELL+GRHF+VVFIGSTLFALQ
Sbjct: 241 TEEAETEFEKLLGGSHVKSALAELSKFDRGDEPDDVKLSELLFGRHFQVVFIGSTLFALQ 300
Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
QLSGINAIFYFSS+VFKS G+ S LANV VG++NL GS+VAM+LMD+LGRK LL WSF
Sbjct: 301 QLSGINAIFYFSSTVFKSVGVPSNLANVCVGLSNLAGSIVAMLLMDRLGRKLLLLWSFSG 360
Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGG 388
MAV+MA+QV A S + S +LYLSVGG
Sbjct: 361 MAVAMAVQVVAGSYHYSDSGALYLSVGG 388
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220399|ref|NP_176898.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|75334518|sp|Q9FYG3.1|PLST2_ARATH RecName: Full=Probable plastidic glucose transporter 2 gi|9828628|gb|AAG00251.1|AC002130_16 F1N21.12 [Arabidopsis thaliana] gi|110742090|dbj|BAE98976.1| transport protein like protein [Arabidopsis thaliana] gi|332196504|gb|AEE34625.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/392 (71%), Positives = 330/392 (84%), Gaps = 4/392 (1%)
Query: 1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
M G QRE S MYKRTSSRD S DVE+++ L++N E+E TNPSWK S PHVLVAT+
Sbjct: 1 MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60
Query: 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS SG +ADG GRR
Sbjct: 61 SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120
Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
RAFQ+CALPMI+GA +S + +L MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180
Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
G+FIQIATCLGLM +L IGIPV I GWWR+CFW+S +PAA+L L M CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240
Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
G+ AEAEAEFE+LLGGSHVK+++AEL K LD+ D+ D+V ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300
Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360
Query: 357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
SF MA +MA+QV A+SSY+P ++L LSVGG
Sbjct: 361 SFIGMAAAMALQVGATSSYLPHFSALCLSVGG 392
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520521|ref|XP_003528910.1| PREDICTED: probable plastidic glucose transporter 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/382 (73%), Positives = 322/382 (84%)
Query: 9 SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
S MYKRT SRD S+ DVEE + L+ G + +NPS LS PHVLVAT+SSFLFGYHLG
Sbjct: 6 SSMYKRTPSRDNSNMEDVEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65
Query: 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG LSGWIADGVGRRRAFQLCALPM
Sbjct: 66 VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125
Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
IIGAS+SA T NL GML+GR VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185
Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILATAMVFCAESPHWLYKQGRTAEAEAEF 245
Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
E+LLG S K +++ELSK DRGDD D VK ELL+GRH +VVFIGSTLFALQQLSGINA+
Sbjct: 246 ERLLGVSEAKFAMSELSKADRGDDSDSVKLSELLHGRHSKVVFIGSTLFALQQLSGINAV 305
Query: 309 FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368
FYFSS+VFKSAG+ S +ANV +GIANL GS+V+M LMDKLGRK LL WSFF MA++M +Q
Sbjct: 306 FYFSSTVFKSAGVPSDIANVCIGIANLAGSIVSMGLMDKLGRKVLLFWSFFGMAIAMILQ 365
Query: 369 VAASSSYIPGSASLYLSVGGLY 390
++S + + Y SVGG++
Sbjct: 366 ATGATSLVSNMGAQYFSVGGMF 387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531285|ref|XP_003534208.1| PREDICTED: probable plastidic glucose transporter 2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 281/381 (73%), Positives = 322/381 (84%)
Query: 9 SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
S MYKRT SRD S+ D+EE + L+ G + +NPS LS PHVLVAT+SSFLFGYHLG
Sbjct: 6 SSMYKRTPSRDNSNMEDMEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65
Query: 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG LSGWIADGVGRRRAFQLCALPM
Sbjct: 66 VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125
Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
IIGAS+SA T NL GML+GR VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185
Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILAAAMVFCAESPHWLYKQGRTAEAEAEF 245
Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
E+LLG S K +++ELSK+DRGDD D VK ELL+GRH +VVFIGSTLFALQQLSGINA+
Sbjct: 246 ERLLGVSEAKFAMSELSKVDRGDDTDTVKLSELLHGRHSKVVFIGSTLFALQQLSGINAV 305
Query: 309 FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368
FYFSS+VFKSAG+ S +ANV +GIANL GS+V+M LMDKLGRK LL WSFF MA++M +Q
Sbjct: 306 FYFSSTVFKSAGVPSDIANVCIGIANLAGSIVSMGLMDKLGRKVLLFWSFFGMAIAMILQ 365
Query: 369 VAASSSYIPGSASLYLSVGGL 389
++S + + Y SVGG+
Sbjct: 366 ATGATSLVSNVGAQYFSVGGM 386
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42570243|ref|NP_849855.2| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|332196503|gb|AEE34624.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 282/393 (71%), Positives = 329/393 (83%), Gaps = 5/393 (1%)
Query: 1 MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
M G QRE S MYKRTSSRD S DVE+++ L++N E+E TNPSWK S PHVLVAT+
Sbjct: 1 MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60
Query: 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS SG +ADG GRR
Sbjct: 61 SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120
Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
RAFQ+CALPMI+GA +S + +L MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180
Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
G+FIQIATCLGLM +L IGIPV I GWWR+CFW+S +PAA+L L M CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240
Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
G+ AEAEAEFE+LLGGSHVK+++AEL K LD+ D+ D+V ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300
Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360
Query: 357 SFFSMAVS-MAIQVAASSSYIPGSASLYLSVGG 388
SF M S MA+QV A+SSY+P ++L LSVGG
Sbjct: 361 SFIGMVCSAMALQVGATSSYLPHFSALCLSVGG 393
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 390 | ||||||
| TAIR|locus:2019554 | 494 | AT1G67300 [Arabidopsis thalian | 0.994 | 0.785 | 0.699 | 2.5e-145 | |
| TAIR|locus:2017899 | 495 | SGB1 "SUPPRESSOR OF G PROTEIN | 0.935 | 0.737 | 0.690 | 2.7e-132 | |
| TAIR|locus:2205548 | 524 | AT1G05030 [Arabidopsis thalian | 0.879 | 0.654 | 0.434 | 1.2e-74 | |
| TAIR|locus:2181422 | 546 | PGLCT "plastidic GLC transloca | 0.812 | 0.580 | 0.424 | 1.9e-67 | |
| DICTYBASE|DDB_G0278261 | 630 | DDB_G0278261 "solute carrier f | 0.858 | 0.531 | 0.313 | 8.3e-40 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.833 | 0.701 | 0.307 | 7.8e-39 | |
| TAIR|locus:2016407 | 488 | AT1G19450 [Arabidopsis thalian | 0.825 | 0.659 | 0.313 | 7.8e-39 | |
| TAIR|locus:2025132 | 487 | ERDL6 "ERD6-like 6" [Arabidops | 0.797 | 0.638 | 0.315 | 3.4e-38 | |
| TIGR_CMR|CPS_0245 | 478 | CPS_0245 "sugar transporter fa | 0.802 | 0.654 | 0.293 | 4.5e-38 | |
| TAIR|locus:2009832 | 580 | INT2 "inositol transporter 2" | 0.853 | 0.574 | 0.303 | 7e-38 |
| TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
Identities = 275/393 (69%), Positives = 322/393 (81%)
Query: 1 MWGRQREASMMYKXXXXXXXXXXFDVEETTALVQNGT--EVENTNPSWKLSFPHVLVATL 58
M G QRE S MYK DVE+++ L++N E+E TNPSWK S PHVLVAT+
Sbjct: 1 MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60
Query: 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS SG +ADG GRR
Sbjct: 61 SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120
Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
RAFQ+CALPMI+GA +S + +L MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180
Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
G+FIQIATCLGLM +L IGIPV I GWWR+CFW+S +PAA+L L M CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240
Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHFRVVFIGSTL 296
G+ AEAEAEFE+LLGGSHVK+++AEL KLD + D+ D+V ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300
Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360
Query: 357 SFFSMAVS-MAIQVAASSSYIPGSASLYLSVGG 388
SF M S MA+QV A+SSY+P ++L LSVGG
Sbjct: 361 SFIGMVCSAMALQVGATSSYLPHFSALCLSVGG 393
|
|
| TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
Identities = 252/365 (69%), Positives = 295/365 (80%)
Query: 25 DVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN 84
D ET + GT + NPSWK S PHVLVA+L+S LFGYHLGVVNE LESIS+DLGF+
Sbjct: 30 DKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFS 89
Query: 85 GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM 144
GNT+AEGLVVS CLGGAFIGS SG +ADGVGRRRAFQL ALPMI+GAS+SA+T +L+GM
Sbjct: 90 GNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGM 149
Query: 145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204
LLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+ QIATC+GL+GSL GIP K+
Sbjct: 150 LLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNL 209
Query: 205 GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
GWWRICFW+S VPAA+L + M C ESP WL+K+GR AEAEA FEKLLGGS+VK+++AEL
Sbjct: 210 GWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAEL 269
Query: 265 SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG 324
K DRGDD D K ELL+GR FRVVFIGSTLFALQQLSGINA+FYFSS+VFK AG+ S
Sbjct: 270 VKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPSA 329
Query: 325 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL 384
AN+ VG+ NLLGS VA+VLMDKLGRK LL SF MAVS+ +Q A +S +L+L
Sbjct: 330 SANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIAYTSLPSPFGTLFL 389
Query: 385 SVGGL 389
SVGG+
Sbjct: 390 SVGGM 394
|
|
| TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 150/345 (43%), Positives = 223/345 (64%)
Query: 46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
W +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct: 76 WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135
Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
++G + D G RR FQ+ +P+I+GA +SA +L +L GRF+VG G+G+ + +Y
Sbjct: 136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195
Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
++EV+P RG+ G QI TCLG++ SLL+GIP ++ WWR +V+ +P +L L M
Sbjct: 196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255
Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
F ESP WL K GR +A+ + GGS V+ ++ + + + ++ ++ ELL
Sbjct: 256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315
Query: 285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 343
H RV FIG +LF LQQ +GIN + YFSS F++ G++SG A+++VG+ N G++ A
Sbjct: 316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375
Query: 344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
L+DK GRK LL S+ MAVSM + V A + S LS+ G
Sbjct: 376 LIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILG 420
|
|
| TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 135/318 (42%), Positives = 204/318 (64%)
Query: 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
P V VA L + LFGYHLGVVN LE ++ DLG NT+ +G +VS L GA +GS G
Sbjct: 107 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGA 166
Query: 111 IADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
+AD GR R FQL A+P+ IGA + AT +++ M++GR + G G+G+ + LY++E+S
Sbjct: 167 LADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEIS 226
Query: 171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
P +RG G+ Q+ C+G++ +L+ G+P+ WWR F V+++P+ +L + M F E
Sbjct: 227 PTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPE 286
Query: 231 SPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290
SP WL ++G+ +EAE + L G V + +LS +G + +L R+++VV
Sbjct: 287 SPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVV 346
Query: 291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLG 349
+G+ LF QQL+GINA+ Y+S+SVF+SAG+ S +A + VG +N+ G+ VA LMDK+G
Sbjct: 347 SVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMG 406
Query: 350 RKALLQWSFFSMAVSMAI 367
RK+LL SF MA+SM +
Sbjct: 407 RKSLLLTSFGGMALSMLL 424
|
|
| DICTYBASE|DDB_G0278261 DDB_G0278261 "solute carrier family 2 member protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 8.3e-40, P = 8.3e-40
Identities = 112/357 (31%), Positives = 181/357 (50%)
Query: 25 DVEETTALVQNGTEVENTNPSWKLSFP---HVLVATLSSFLFGYHLGVVNEPLESISLDL 81
++ TT +N E N N + KLSF +V + LS+ FGY+ GV++ + I
Sbjct: 152 NISTTTITTRNNNENLNNNNNSKLSFFLIFNVSFSVLSTLQFGYNTGVISPTILDIQTIF 211
Query: 82 GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL 141
G N N + ++VS L GA +GS LSG+ D GR++ L ++G + + +N
Sbjct: 212 GLNVNE--KSMLVSSVLFGAMLGSFLSGFFVDIFGRKKTLLGNNLFYLLGPLLCSVGKNY 269
Query: 142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201
+L+GR + G G+G+ +V LY+TE+SPP RG+ G Q LG+M S L +
Sbjct: 270 ATLLIGRLITGVGVGIASSVVPLYITEISPPSFRGSLGLLRQSTVTLGIMLSSLFAYGLL 329
Query: 202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261
+ WR F ++ +P+ + + ESP WL K R EA+ +K+ HV L
Sbjct: 330 VYSNGWRYTFAIASIPSLFQFILGYWFVESPRWLVSKNREDEAKQIMKKI--EPHVSEDL 387
Query: 262 AEL-------SKLD-RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS 313
+L S L+ +G+D + F+ Y ++ ++ IG L LQQ GIN + Y+S
Sbjct: 388 IDLQITRIRSSVLEQKGNDNWLQLFQ---Y-QYLKIYIIGFGLNMLQQFVGINCVIYYSG 443
Query: 314 SVFKSAGLSSGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367
+ + AG + A VGI L+ ++++ L+D+ GRK LL M + +A+
Sbjct: 444 IILEDAGFAKNAAVLIGALVGIPQLVMLLISVWLIDRFGRKPLLLVGCIGMIIGLAV 500
|
|
| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 105/341 (30%), Positives = 179/341 (52%)
Query: 35 NGTEVENTNPSWKLSFPHVL--VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGL 92
N T+ + P+ K F V+ +A + LFGY GV++ + IS + F+ + G
Sbjct: 2 NSTD-QYVLPAKKSHFYWVIAFIAAFAGILFGYDTGVISGAILFISQE--FHLSPQMNGF 58
Query: 93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152
VVS L GAF+G+ SG +AD +GR+R + AL I+G +IS+ T ++ +++GR +VG
Sbjct: 59 VVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVG 118
Query: 153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212
+G+ A LY++E+SPP RG + Q+A +G+ S ++ W R F
Sbjct: 119 IAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDAW-RSMFA 177
Query: 213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSKLDRGD 271
++PAA+L L M+ SP W++ +G +A KL G G H + L + +
Sbjct: 178 AGVIPAALLLLGMIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIRASLQQQ 237
Query: 272 DGDIVKFEELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG----LA 326
GD L+ + R +FI L QQ++GIN + Y++ ++ K G + LA
Sbjct: 238 KGDW----RTLFSKIIRPTLFIAIGLAVFQQVTGINTVLYYAPTILKMTGFQASQTAILA 293
Query: 327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367
+ +G ++ +++++ L+D LGR+ LL +M VS+ +
Sbjct: 294 TMGIGAVLVIITIISLPLIDSLGRRPLLFIGVGAMTVSLLV 334
|
|
| TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 106/338 (31%), Positives = 182/338 (53%)
Query: 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
VL+ L FG+ G + +I+ DLG T++E V S+ GA +G+ SG I
Sbjct: 53 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 109
Query: 112 ADGVGRRRAFQLCALPMIIG-ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
A+ VGR+ + + A+P IIG SIS ++ + +GR + G G+G+ +Y+ E++
Sbjct: 110 AEYVGRKGSLMIAAIPNIIGWLSISFA-KDTSFLYMGRLLEGFGVGIISYTVPVYIAEIA 168
Query: 171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
P +RG G+ Q++ +G+M + L+G+ V WRI + ++P +L + F E
Sbjct: 169 PQTMRGALGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGVLPCTLLIPGLFFIPE 223
Query: 231 SPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFR 288
SP WL K G T + E + L G + + + E+ + + V+F +L R++
Sbjct: 224 SPRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYF 283
Query: 289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDK 347
+ +G L ALQQL GIN + ++SS++F+SAG+ SS +A VG+ ++ + +A L+DK
Sbjct: 284 PLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDK 343
Query: 348 LGRKALLQWSFFSMAVSMAIQVAAS--SSYIPGSASLY 383
GR+ LL S M +S+ I A ++ +++Y
Sbjct: 344 AGRRLLLMISSIGMTISLVIVAVAFYLKEFVSPDSNMY 381
|
|
| TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 102/323 (31%), Positives = 174/323 (53%)
Query: 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
VL+ L FG+ G + +I+ DLG T++E V S+ GA +G+ SG I
Sbjct: 52 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 108
Query: 112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
A+ +GR+ + + A+P IIG + ++ + +GR + G G+G+ +Y+ E++P
Sbjct: 109 AEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 168
Query: 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
+RG G+ Q++ +G+M + L+G+ V WRI + I+P +L + F ES
Sbjct: 169 QNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIPES 223
Query: 232 PHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRV 289
P WL K G T E E + L G + + + E+ + + + V+F +L R++
Sbjct: 224 PRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFP 283
Query: 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKL 348
+ +G L LQQL GIN + ++SS++F+SAG++S A F VG ++ + ++ L+DK
Sbjct: 284 LMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKA 343
Query: 349 GRKALLQWSFFSMAVSMAIQVAA 371
GR+ LL S M +S+ I AA
Sbjct: 344 GRRLLLTISSVGMTISLVIVAAA 366
|
|
| TIGR_CMR|CPS_0245 CPS_0245 "sugar transporter family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 99/337 (29%), Positives = 169/337 (50%)
Query: 49 SFPHVL----VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIG 104
SF +VL VA + FLFG+ GV+N + + L FN + +A G V+ L G +G
Sbjct: 22 SFLYVLFISSVAAIGGFLFGFDSGVINGTVTA--LGNAFNASDVASGFNVASVLLGCAVG 79
Query: 105 STLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL 164
+ ++G I+D GR+ + A+ I A S + + + R + G G+G +A
Sbjct: 80 ALMAGPISDRFGRKPIMIITAIIFAISAFGSGISSSSAEFIFYRLIGGLGIGAASVLAPA 139
Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-----------WRICFWV 213
Y+ EV+P +RG Q+A LGL + L + ++G WR FWV
Sbjct: 140 YIAEVAPAALRGRLATLQQLAIVLGLFAAFLSNFLIASVSGGAEAMLMLDIAAWRWMFWV 199
Query: 214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDG 273
++PA + + ++F ESP +L +G+ EA F+++ G + E+ K GD
Sbjct: 200 ELLPAVLFLVGVIFIPESPRYLVAQGKIEEARTIFKRIATGVE-NEQIEEVKKSLHGDKK 258
Query: 274 DIVKFEELLYGRH--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL--SSGL-ANV 328
++ + + G+ +++IG L QQ GIN +FY+ + ++++AG S L N+
Sbjct: 259 PSIR-DLFIDGKKKIHPIIWIGIGLSVFQQFVGINVVFYYGAELWQAAGFDESQSLFINL 317
Query: 329 FVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM 365
G N++ + +A+ L+DK+GRK LL M +S+
Sbjct: 318 IAGTTNIISTFIAIALVDKIGRKPLLLVGSVGMFISL 354
|
|
| TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 109/359 (30%), Positives = 178/359 (49%)
Query: 45 SWKLSFPHVL----VATLSSFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLG 99
+WK P+VL A + LFGY GV++ L I D + NT + ++VSM +
Sbjct: 22 TWKN--PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVA 79
Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
GA +G+ + GW D +GRR A + ++GA I A N +++GR VG G+G+
Sbjct: 80 GAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMAS 139
Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
A LY++E SP +RG + G S LI + ++ G WR ++ +PA
Sbjct: 140 MTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPAL 199
Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSK------LDRGDDG 273
+ + M ESP WLY+KGR EA+A ++ V+ + L L+ G
Sbjct: 200 LQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSE 259
Query: 274 DI--VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-----LA 326
I +K + R + +G +F QQ GIN + Y+S ++ + AG +S L+
Sbjct: 260 KINMIKLCKAKTVRRGLIAGVGLQVF--QQFVGINTVMYYSPTIVQLAGFASNRTALLLS 317
Query: 327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA---SSSYIPGSASL 382
V G+ N GS++++ +D++GRK LL S F + +S+ I ++++ P +SL
Sbjct: 318 LVTAGL-NAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGVFYEAATHAPAISSL 375
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FYG3 | PLST2_ARATH | No assigned EC number | 0.7193 | 0.9948 | 0.7870 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 390 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-56 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 9e-47 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-41 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-15 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-14 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 4e-14 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-11 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 8e-09 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-08 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-07 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-05 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 2e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-05 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 6e-05 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 6e-04 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 6e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-04 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 0.002 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 2e-56
Identities = 108/331 (32%), Positives = 174/331 (52%), Gaps = 16/331 (4%)
Query: 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE---------GLVVSMCLGGAFI 103
LVA L FLFGY GV+ L I F T GL+VS+ G I
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61
Query: 104 GSTLSGWIADGVGRRRAFQLCALPMIIGA--SISATTRNLIGMLLGRFVVGTGMGLGPTV 161
GS +G + D GR+++ + + +IGA A ++ +++GR +VG G+G +
Sbjct: 62 GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121
Query: 162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW--WRICFWVSIVPAA 219
+Y++E++P +RG G+ Q+ G++ + +IG+ + + + WRI + VPA
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE-LSKLDRGDDGDIVKF 278
+L + ++F ESP WL KG+ EA A KL G S V + E L+R + + +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241
Query: 279 EELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-SGLANVFVGIANLL 336
EL G+ R + +G L QQL+GINAIFY+S ++F++ GLS S L + VG+ N +
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301
Query: 337 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367
+ +A+ L+D+ GR+ LL MA+ +
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLV 332
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 9e-47
Identities = 102/336 (30%), Positives = 167/336 (49%), Gaps = 23/336 (6%)
Query: 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGN------TLAEGLVVSMCLGGAFIGSTL 107
L+A + +FGY GV+ L + + F + GLVVS+ L G FIG+
Sbjct: 31 LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90
Query: 108 SGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG---MLLGRFVVGTGMGLGPTVAAL 164
+GW++D GR+++ + AL +IGA + + +++GR ++G G+G+ + +
Sbjct: 91 AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150
Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---WRICFWVSIVPAAIL 221
Y++E++P +RG + Q+A G++ + G WRI + ++PA +L
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV-SLNNTLGWRIPLGLQLIPAGLL 209
Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV-KSSLAELS----KLDRGDDGDIV 276
L + F ESP WL KGR EA +L G S K L EL K
Sbjct: 210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQP 269
Query: 277 KFEELLY--GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVG 331
+ L R R +F+G L QQ +GINAI Y+S ++F++AG+S+ L ++ VG
Sbjct: 270 SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVG 329
Query: 332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367
N + VA+ L+D+ GR+ LL MA+ + +
Sbjct: 330 AVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV 365
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-41
Identities = 103/363 (28%), Positives = 166/363 (45%), Gaps = 42/363 (11%)
Query: 53 VLVATLSSFLFGYHLGVVNEPLESI------SLDLGFNGNTLAEGLVVSMCLGGAFIGST 106
LVATL LFGY V++ +ES+ +L + G V+ L G IG
Sbjct: 14 TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73
Query: 107 LSGWIADGVGRRRAFQLCALPMIIGA-----------SISATTRNLIGML-LGRFVVGTG 154
L G+ ++ GRR + ++ A+ I A SI + + R + G G
Sbjct: 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133
Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI-----GIPVKEIAGW--- 206
+GL ++ +Y+ E++P +RG +F Q A + G L++ I A W
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI---IFGQLVVYFVNYFIARSGDASWLNT 190
Query: 207 --WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
WR F +PA + + + F E+P +L +G+ +AE K++G + +L E+
Sbjct: 191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI 250
Query: 265 -SKLDRGDDGDIVKFEELL-YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS 322
LD G +LL +G V+ IG L QQ GIN + Y++ +FK+ G S
Sbjct: 251 KHSLDHG----RKTGGKLLMFG--VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS 304
Query: 323 SGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGS 379
+ +A + VG+ NL +V+A++ +DK GRK L MA+ M A + PG
Sbjct: 305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 364
Query: 380 ASL 382
+L
Sbjct: 365 VAL 367
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 3/176 (1%)
Query: 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
+L+ L FL G G+++ L ++ DLG + + GL+VS G +GS L+G+++
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58
Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
D GRRR L L +G+ + A +L +L+GRF++G G G AA + E PP
Sbjct: 59 DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118
Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
RG LG + L+G + E G WR F + + +L L ++F
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFL 173
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 76/362 (20%), Positives = 138/362 (38%), Gaps = 21/362 (5%)
Query: 37 TEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM 96
P + + ++++ L + GY L + +IS + G + L G + S
Sbjct: 3 QNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSA 60
Query: 97 CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG 156
L G G+ G +AD +GRRR L + + A N+ +L+ RF+ G G+G
Sbjct: 61 GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLG 120
Query: 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV-SI 215
V+E +P RGT + +G + + + G WR F+V I
Sbjct: 121 GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGI 179
Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
P +L L M F ES +L K E + + + L +
Sbjct: 180 APLLLLLLLMRFLPESIDFLVSKR--PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKR 237
Query: 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS----VFKSAGLSSGLANVFVG 331
F+ L G+ R+ + L+ + + YF ++ + G S LA
Sbjct: 238 SVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLTNWLPKLMVELGFSLSLAATGGA 292
Query: 332 IAN---LLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
+ N ++GS++ L D+LG + + ++ + S+ + P L ++ G
Sbjct: 293 LFNFGGVIGSIIFGWLADRLGPRVTA---LLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349
Query: 389 LY 390
+
Sbjct: 350 FF 351
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 13/269 (4%)
Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
G +GS + G+++D GR++ L L + ++A + N L+ R +VG G+G
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198
Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
A + TE P R G IQ+ LGL+ L+ + + WR +P
Sbjct: 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTF 254
Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKL--LGGSHVKSSLAELSKL-DRGDDGDIV 276
+ L F ESP WL +GR EA +++ + G + + + LS D
Sbjct: 255 LFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQY 314
Query: 277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA-GLSSGLANVFVGIANL 335
F +L + R + L L A Y+ + G + L G+ L
Sbjct: 315 SFLDLFRTPNLRKTTL-----CLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVEL 369
Query: 336 LGSVVAMVLMDKLGRKALLQWSFFSMAVS 364
++ ++L+D+LGR+ + S V+
Sbjct: 370 PAKLITLLLIDRLGRRYTMAASLLLAGVA 398
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-11
Identities = 67/340 (19%), Positives = 126/340 (37%), Gaps = 38/340 (11%)
Query: 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
+ +A + L LG ++ DLG + + GL+++ G + L+G ++
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56
Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
D GRRR + L +G + +L +L+ R + G G G AA + + PP
Sbjct: 57 DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116
Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP 232
RG + LG L+G + + G WR F + + A + +
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAILALLAAVLAAL----- 170
Query: 233 HWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292
L + ++ E+ +V +LL + +
Sbjct: 171 -LLPRPPPESKRPKPAEEAPAP--------------------LVPAWKLLLRDPVLWLLL 209
Query: 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMV---LMDKLG 349
LF A+ + + GLS+ LA + +G+A LLG++ ++ L D+LG
Sbjct: 210 ALLLFGF----AFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLG 265
Query: 350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGL 389
R+ L + + ++ S + + L + G
Sbjct: 266 RRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGF 305
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 61/283 (21%), Positives = 108/283 (38%), Gaps = 57/283 (20%)
Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGM------LLGRFVVGTG 154
+G+ + G D +GR++ + L M IG + + IG+ LL R + G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------W-W 207
+G AALY+ E +PP RG YG+F Q+ +GL+ + L + + + G W W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL 267
RI F VS V I E+P + + + + + L
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLT-------------- 215
Query: 268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN 327
+H + +G L + Y + + ++ GLS AN
Sbjct: 216 -----------------KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLS---AN 255
Query: 328 VFVGIANLLGSVVAMV-------LMDKLGRKALLQWSFFSMAV 363
+ + +L ++ + L D++GR+ +L A+
Sbjct: 256 SALLV-LMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAAL 297
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 1/156 (0%)
Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
G+ + G D GRR + G I M + R V+G GMG +
Sbjct: 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121
Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAIL 221
A YV E P +R + +G + + + V + G WR F++SI+P
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181
Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV 257
E+ W K A + L GG H
Sbjct: 182 LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR 217
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 67/283 (23%), Positives = 113/283 (39%), Gaps = 46/283 (16%)
Query: 98 LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL 157
L GA +G G +AD +GR+R + + + +A + +L+ R + TG+GL
Sbjct: 64 LPGALLG----GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL--TGVGL 117
Query: 158 G---PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214
G P + AL +E P +RGT + + G + +IG+ A W R F+V
Sbjct: 118 GGALPNLIAL-TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW-RHIFYVG 175
Query: 215 -IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDG 273
+ P ++ L M + ES + G + L G ++L
Sbjct: 176 GVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLL----------- 224
Query: 274 DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFV 330
+ + TL L L +N + S+ GLS +GL +
Sbjct: 225 -------------LWISYFF-TLIVLYFL--LNWL----PSLLVGQGLSRSQAGLVQIAF 264
Query: 331 GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS 373
I LGS++ LMD+L + ++ + + S+A AA S
Sbjct: 265 NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS 307
|
Length = 406 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
G I S LSG + D GR+ + ++ ++ A + N+ +++ RF+ G G
Sbjct: 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69
Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
A + ++ PP RG + LG + +G + + G WR F + A
Sbjct: 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAI-LA 127
Query: 220 ILCLAMVFC 228
+ ++
Sbjct: 128 LAAFILLAF 136
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 2/179 (1%)
Query: 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSG 109
+L+ L+ FL + + L ++ A GL++S+ G +G+ L G
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA-GLLLSLFGLGGILGALLGG 232
Query: 110 WIADGVGRRRAFQLCALP-MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168
++D +GRRR L L +G + A +L +L+ ++G G+G +E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292
Query: 169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
++PP RGT LG L+ + + G+ + ++ + L ++
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 9/165 (5%)
Query: 77 ISLDLGFN---GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133
I DLG G LA + GGA G +AD GR+ + +G
Sbjct: 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGL-----LADKFGRKPLMMWSIVAYSVGTG 98
Query: 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS 193
+S +I + L RF+VG GM A+ Y E P ++ AF+ +G + +
Sbjct: 99 LSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA 158
Query: 194 LLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
E G WR F+V ++P ++ ES W K
Sbjct: 159 AYFMPSFAEAYG-WRAAFFVGLLPVLLVIYIRARAPESKEWEEAK 202
|
Length = 426 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV 150
G +++ G +G+ L + + RRR I+ +SA + +LL R +
Sbjct: 51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110
Query: 151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---- 206
G G+ ++AA + PP RG A + T GL + ++G+P + +
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRG--RALALVFT--GLTLATVLGVP---LGTFLGQL 163
Query: 207 --WRICFWVSIVPAAILCLAMVF 227
WR F I A+L L +++
Sbjct: 164 FGWRATFLA-IAVLALLALLLLW 185
|
Length = 394 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 21/164 (12%)
Query: 85 GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLI 142
GN +++ + A +G+ L W+A G++R F L L IG + +L
Sbjct: 254 GNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLW 313
Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEV-----------SPPFVRGTYGAFIQIATCLGLM 191
L+ + G G+GL + + +V Y ++ LG
Sbjct: 314 LFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGA 373
Query: 192 GSLLI--------GIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
L+ + A I +++PA + LA++
Sbjct: 374 IVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLI 417
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 20/212 (9%)
Query: 46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF-NGNTLAEGLVVSMCLGGAFIG 104
W L F V L+ G + VV L S DL + GL+V + G +G
Sbjct: 166 WALFF----VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYL---GMMVG 218
Query: 105 STLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL 164
+ G +AD +GR++ +C A S+ + L R + G G+G +
Sbjct: 219 AFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS 278
Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW------------WRICFW 212
Y E RG + +++ + +G + + + + GW WR+
Sbjct: 279 YFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338
Query: 213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEA 244
V P A+ F ESP + + G+ EA
Sbjct: 339 VCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
I L+GW+A G RR F + +G+ + NL M++ R + G G G ++
Sbjct: 52 ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLS 111
Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222
+ + PP RG A + + +G + E WR F +++ I+
Sbjct: 112 FSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFLINVPIGIIVV 170
Query: 223 LAMVF 227
+ F
Sbjct: 171 VVAFF 175
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
VL L+ LFG+ + L LG + L GL++ + IG L G
Sbjct: 202 DPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLS--ALLAGLLLGLAGLLGAIGRLLLGR 259
Query: 111 IADGVGRRRAFQLCALPMIIGA---SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT 167
++D +GRRR L L +I+ A ++ + T + + +L+ ++G G GL V+
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS 319
Query: 168 EVSPPFVRGTYGAFIQIATCLG 189
+++P RGT A LG
Sbjct: 320 DLAPKEERGTASGLYNTAGSLG 341
|
Length = 346 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 83 FNGNTLAEGLVVSMCLGGAFIGSTL-SGWIADGVGRRRAFQLCALPMIIGASISATTR-- 139
F L++ L+V++ +G T + ++ D GRR L A M I +
Sbjct: 280 FETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLG 339
Query: 140 --------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM 191
+ + + F+ +G GP V + V+E+ P VR + IAT +
Sbjct: 340 VAKSKGAGIVAIVFILLFIAFFALGWGP-VPWVIVSELFPLGVRP---KAMAIATAANWL 395
Query: 192 GSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
+ LIG I G I +V +V A +L L ++F
Sbjct: 396 ANFLIGFLFPIITG--AIGGYVFLVFAGLLVLFILFV 430
|
Length = 449 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 83 FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTR 139
F+ L+ GG FI S +G + +G + L L +GA++ +A+++
Sbjct: 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102
Query: 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
+ L+ F++ +G+GL T A YVT + P
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKP 135
|
Length = 422 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.98 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.98 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.96 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.95 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.94 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.93 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.92 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.92 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.92 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.91 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.91 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.9 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.9 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.9 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.9 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.89 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.89 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.88 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.87 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.85 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.85 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.84 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.82 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.82 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.78 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.78 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.77 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.77 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.75 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.75 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.73 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.71 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.69 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.69 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.68 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.67 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.66 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.65 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.64 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.63 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.63 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.62 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.62 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.61 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.61 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.61 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.61 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.6 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.59 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.59 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.59 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.58 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.58 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.57 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.56 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.55 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.55 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.54 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.54 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.53 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.52 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.52 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.52 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.52 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.51 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.49 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.49 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.49 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.48 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.48 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.47 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.47 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.47 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.46 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.45 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.45 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.45 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.42 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.4 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.39 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.37 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.36 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.35 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.35 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.34 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.34 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.33 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.33 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.32 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.32 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.31 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.3 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.29 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.28 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.28 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.26 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.25 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.24 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.24 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.22 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.22 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.21 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.2 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.2 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.19 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.18 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.18 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.17 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.16 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.16 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.15 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.14 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.14 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.14 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.12 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.11 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.11 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.09 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.09 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.08 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.07 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.06 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.06 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.06 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.05 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.05 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 99.04 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.01 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.0 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.0 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.99 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.98 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.98 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.93 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.92 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.91 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.91 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.9 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.88 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.88 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.87 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.82 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.81 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.8 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.79 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.78 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.78 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.74 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.7 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.68 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.6 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.57 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.57 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.55 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.54 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.53 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.43 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.42 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.39 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.32 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.29 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.24 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.24 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.24 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.22 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.2 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.17 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.12 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.01 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.99 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.92 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.91 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.87 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.76 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.71 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.59 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.54 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.39 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.35 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.1 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.04 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.95 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.88 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.77 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.57 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.39 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.36 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.3 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.22 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.14 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 95.95 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.74 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 95.67 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.44 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.42 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 94.85 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 94.72 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 94.6 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 94.18 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 94.13 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 94.0 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.01 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 92.03 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.95 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 90.39 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 89.12 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 83.46 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 82.33 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.94 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 81.93 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=282.51 Aligned_cols=207 Identities=20% Similarity=0.261 Sum_probs=186.6
Q ss_pred chhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhH
Q 016428 46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA 125 (390)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~ 125 (390)
.+..|..+++++++.+..+++...++..+|.+.++++++..+. +++.+++.++.+++++++|+++||+|||+++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l 239 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL 239 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4566778888888888899999989999999999999987766 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc--
Q 016428 126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-- 203 (390)
Q Consensus 126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-- 203 (390)
++.+++.++++++++++.++++|+++|++.|+..+....++.|++|+++|++.+++...++.+|.++++.++..+...
T Consensus 240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988766544322
Q ss_pred -----------CchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCC
Q 016428 204 -----------AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS 255 (390)
Q Consensus 204 -----------~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 255 (390)
.+ ||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+
T Consensus 320 ~~~~~g~~~~~~g-WR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 320 WSFQMGSAYQFHS-WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred chhcccccccccc-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 24 9999999888888877777889999999999999999999998887654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=252.68 Aligned_cols=290 Identities=21% Similarity=0.258 Sum_probs=255.7
Q ss_pred hhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHH
Q 016428 48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP 127 (390)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~ 127 (390)
..+..++.+.++.|..+....+....+|++.+|+|++.++. |++.|+|.++..++.++...++||+.||++++..+.+
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 34566778888899999999999999999999999999888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchh
Q 016428 128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW 207 (390)
Q Consensus 128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~w 207 (390)
+.++++++++++||+.++++|++.|+..|..++....+.++..|+++|++++++...+..++..+|.++|.++.+..| |
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-W 166 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-W 166 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccc
Q 016428 208 RICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH 286 (390)
Q Consensus 208 r~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (390)
|+.|++.+..+++..+.. ..+| |+ + . +++...+..+..++++++.
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~----~-~---------------------------~~~~~~~~~~~~~~l~~p~ 212 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PS----E-I---------------------------SGSLPGPLRTLLRLLRRPG 212 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--Cc----c-C---------------------------CCCCCcchhHHHHHhcCch
Confidence 999999888888876655 4577 11 0 0 0011112223556888999
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 016428 287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366 (390)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 366 (390)
.+..++..++....++..++++..++++..+.+....+.....++++.++|+.++|++.|| +.|+.+.....+.++..+
T Consensus 213 v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l 291 (394)
T COG2814 213 VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALL 291 (394)
T ss_pred HHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888877778889999999999999999999999 888888888888888877
Q ss_pred HHHHhcccC
Q 016428 367 IQVAASSSY 375 (390)
Q Consensus 367 ~~~~~~~~~ 375 (390)
.+.+..++.
T Consensus 292 ~l~~~~~~~ 300 (394)
T COG2814 292 ALTFTGASP 300 (394)
T ss_pred HHHHhcchH
Confidence 776665543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=255.40 Aligned_cols=310 Identities=16% Similarity=0.130 Sum_probs=254.3
Q ss_pred CchhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHh
Q 016428 45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC 124 (390)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~ 124 (390)
.++.+++.++.+.+++...++.+..++...|.+.||.++|.+|. |++.+.+.++|.++.++.|.++||.++|..+.++
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 34566788999999999999999999999999999999988887 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhc--ccccc
Q 016428 125 ALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG--IPVKE 202 (390)
Q Consensus 125 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~~l~~ 202 (390)
+++.++.+++++++++.+.+.+..+++|+..|...|.+...++.|+|+++||+..++++++-++|..+.|++. +.+..
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888888 78887
Q ss_pred cCchhHHHHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCC-----ccc
Q 016428 203 IAGWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDG-----DIV 276 (390)
Q Consensus 203 ~~g~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 276 (390)
+.+ ||..|++.++++++..+.. +..+|+|+..-...- ++ ..++. .+.+ +++++. ...
T Consensus 181 ~~~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~i-e~-------~~~d~------~e~~--~~~~~~~~ls~~~i 243 (448)
T COG2271 181 HGG-WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI-EE-------YRGDP------LEIY--EEEKENEGLTAWQI 243 (448)
T ss_pred ccc-hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCH-HH-------hhcCc------hhhh--hhhccCCCccHHHH
Confidence 776 9999999888887776555 557888752211110 11 00000 0000 111111 122
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh--CChHHH
Q 016428 277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALL 354 (390)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~ 354 (390)
-.+-+++||..|.+.++.++....-++...|.|.|+.+..+.+-.+++.....+-.++++|+++.|+++||+ |||...
T Consensus 244 ~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~ 323 (448)
T COG2271 244 FVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM 323 (448)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence 345578999999999999999999999999999999999888888899999999999999999999999996 566665
Q ss_pred HHHH-HHHHHHHHHHHHhcc
Q 016428 355 QWSF-FSMAVSMAIQVAASS 373 (390)
Q Consensus 355 ~~~~-~~~~~~~~~~~~~~~ 373 (390)
.+.+ ++..++...+...++
T Consensus 324 ~~i~~~~i~~~~~~~w~~~~ 343 (448)
T COG2271 324 ALIFMLLITASLVLYWLAPN 343 (448)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 5444 444444444444443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=244.00 Aligned_cols=320 Identities=34% Similarity=0.585 Sum_probs=262.3
Q ss_pred HHHHHHHHHHHhhhhcccccccchhhhh--------hcccc--CCc--chhhHHHHHHhHHHHHHHHHhHHHhhchhhhH
Q 016428 51 PHVLVATLSSFLFGYHLGVVNEPLESIS--------LDLGF--NGN--TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118 (390)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~--~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr 118 (390)
.......++.+-.++....+++..+.+. +.+|. +++ +..++.+.+.+.+|.++|++..++++||+|||
T Consensus 11 ~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK 90 (485)
T KOG0569|consen 11 LAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRK 90 (485)
T ss_pred HHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 3444555556778888888888765443 34453 222 23358889999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHH
Q 016428 119 RAFQLCALPMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL 195 (390)
Q Consensus 119 ~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 195 (390)
..++++.++..++.++..++ +++.+++++|++.|+..|......+.|+.|..|++.||....+.+.+..+|..++..
T Consensus 91 ~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~ 170 (485)
T KOG0569|consen 91 NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQV 170 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887776654 789999999999999999999999999999999999999999999999999999977
Q ss_pred hccc-ccccCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHh-cCCHHHHHHHHHHHhCCCCchhHHHHhhh---cccC
Q 016428 196 IGIP-VKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYK-KGRTAEAEAEFEKLLGGSHVKSSLAELSK---LDRG 270 (390)
Q Consensus 196 ~~~~-l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 270 (390)
++.. +......|++.+.+..+++++..+...++||+|+|+.. +++++++++.+++.++..+..++.++..+ .++.
T Consensus 171 ~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~ 250 (485)
T KOG0569|consen 171 LGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEEL 250 (485)
T ss_pred HccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhcc
Confidence 7643 33333339999999999999999999999999999988 89999999999999998876555544332 2223
Q ss_pred CCCccchhhhhhcccchhH-HHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCch---HHHHHHHHHHHHHHHHHHHHHh
Q 016428 271 DDGDIVKFEELLYGRHFRV-VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMD 346 (390)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d 346 (390)
++++..+++++++++..+. ..+...+....++...+.+.+|...++...|.+.. ......++...+.++++.++.|
T Consensus 251 ~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid 330 (485)
T KOG0569|consen 251 EKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLID 330 (485)
T ss_pred ccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347788999999987665 55666777778888899999999999998887644 4778889999999999999999
Q ss_pred hhCChHHHHHHHHHHHHHHHHHHH
Q 016428 347 KLGRKALLQWSFFSMAVSMAIQVA 370 (390)
Q Consensus 347 ~~g~~~~~~~~~~~~~~~~~~~~~ 370 (390)
|.|||++++.+..++.+..+++..
T Consensus 331 ~~gRRpLll~~~~~~~~~~~~~~~ 354 (485)
T KOG0569|consen 331 RLGRRPLLLISLSLMAVALLLMSI 354 (485)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888776654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=266.07 Aligned_cols=317 Identities=11% Similarity=0.032 Sum_probs=247.6
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
+|..+..++++.++...+.+.++..+|.+.+|+|.+.++. +|+.+.|.+++.++.+++|+++||+|||++++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4677888999999999999999999999999999888777 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcC-CCccchhHHHHHHHHHHHHHHHHHHhcccccccCchh
Q 016428 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW 207 (390)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~w 207 (390)
+++++++++++|++.++++|+++|++.+...+.....+.+++ |+++|++++++......+|..+||.+++.+.++.+ |
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-w 160 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-W 160 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-h
Confidence 999999999999999999999999999998888877777765 67899999999999999999999999999999988 9
Q ss_pred HHHHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHH----------HHh-C-CCCchh-H-H----------H
Q 016428 208 RICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFE----------KLL-G-GSHVKS-S-L----------A 262 (390)
Q Consensus 208 r~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~----------~~~-~-~~~~~~-~-~----------~ 262 (390)
||.|++.....++.+++. +++||+|+. +.++.+...... ... . ...... . . .
T Consensus 161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~---~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (495)
T PRK14995 161 GSVFLINVPIVLVVMGLTARYVPRQAGR---RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLG 237 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 999999777666654443 556776431 111111111000 000 0 000000 0 0 0
Q ss_pred HhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH
Q 016428 263 ELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAM 342 (390)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 342 (390)
.....+ .+...+.-..+++++|.+....+..++..........+++.|++..++.+..+++....+..++..++.++.|
T Consensus 238 ~f~~~e-~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g 316 (495)
T PRK14995 238 LFIRTQ-LAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAG 316 (495)
T ss_pred HHHHHH-hcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011 1112223335788899888877777777766666667788888888888888889999999999999999999
Q ss_pred HHHhhhCChHHHHHHHHHHHHHHHHHHHhc
Q 016428 343 VLMDKLGRKALLQWSFFSMAVSMAIQVAAS 372 (390)
Q Consensus 343 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
++.||+|+|+.+..+.++..++..++....
T Consensus 317 ~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~ 346 (495)
T PRK14995 317 ILVSRLGLRLVATGGMALSALSFYGLAMTD 346 (495)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999988888888877776665443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=257.11 Aligned_cols=311 Identities=15% Similarity=0.099 Sum_probs=226.3
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
|.+|+.+.++++.+++++++....+...|.+.+|+|++.++. |++.+++.+++.+++++.|+++||+|||+++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 81 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV 81 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence 345778888888999999999999999999999999988877 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc----
Q 016428 127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---- 202 (390)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---- 202 (390)
+++++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++++++.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999998999999999999999999999999999999999887763
Q ss_pred --cCchhHHHHHHHHHHHHHHHH-HhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhh
Q 016428 203 --IAGWWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE 279 (390)
Q Consensus 203 --~~g~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (390)
..| ||+.|++.+++.++..+ ..+++||+|+... .-..++.+...+.........+.. + ...++........++
T Consensus 162 ~~~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 237 (412)
T TIGR02332 162 MALKG-WQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQLTLEQP-E-GAFAHAAMPQRSMLR 237 (412)
T ss_pred CCccc-hhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhcccccccc-c-cccccccccHHHHHH
Confidence 246 99999998777766544 4466788874210 000111111111111000000000 0 000000001112234
Q ss_pred hhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHH-HhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHH-HHHH
Q 016428 280 ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL-LQWS 357 (390)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~ 357 (390)
+++ ++.++...+..++.....+....++|.++.+. .+.+....+.......++.+++.++.|+++||+++|+. ....
T Consensus 238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~ 316 (412)
T TIGR02332 238 EIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALP 316 (412)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHH
Confidence 444 46666666666666655556566777777552 12333445667888899999999999999999997764 3334
Q ss_pred HHHHHHH
Q 016428 358 FFSMAVS 364 (390)
Q Consensus 358 ~~~~~~~ 364 (390)
..+..++
T Consensus 317 ~~~~~~~ 323 (412)
T TIGR02332 317 YLFAAAG 323 (412)
T ss_pred HHHHHHH
Confidence 4444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=253.47 Aligned_cols=325 Identities=33% Similarity=0.583 Sum_probs=262.8
Q ss_pred hhhHHHHHHHHHHHhhhhc--ccccccchhhhhhccccCC---cc--hhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHH
Q 016428 48 LSFPHVLVATLSSFLFGYH--LGVVNEPLESISLDLGFNG---NT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120 (390)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~--~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~ 120 (390)
..........++.+..+++ ....++....+.++...+. ++ .+.+|+.+.+.++..+++++.|+++|++|||+.
T Consensus 42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~ 121 (513)
T KOG0254|consen 42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT 121 (513)
T ss_pred ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3344555666666777775 5566667776666443221 11 234899999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccc
Q 016428 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (390)
Q Consensus 121 l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 200 (390)
++++.+++.++.+++++++|+.+++++|+++|+|.|......+.|++|..|++.||...+..+....+|..++..++...
T Consensus 122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997776666
Q ss_pred ccc-CchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCC--CCchhHHHHhhhcc---cCCCCc
Q 016428 201 KEI-AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGG--SHVKSSLAELSKLD---RGDDGD 274 (390)
Q Consensus 201 ~~~-~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~ 274 (390)
.+. .+ ||..+.+..+++++..+..++.||+|+|+.++++.+++++.++++.+. .+...+..+.+... ......
T Consensus 202 ~~~~~~-Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
T KOG0254|consen 202 SKVYAG-WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG 280 (513)
T ss_pred ccCCcc-HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence 543 35 999999999999988888888999999999999999999999999883 33333333333111 111112
Q ss_pred cchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCc--hHHHHHHHHHHHHHHHHHHHHHhhhCChH
Q 016428 275 IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS--GLANVFVGIANLLGSVVAMVLMDKLGRKA 352 (390)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 352 (390)
...+.++++.+..+...+...+..+.+++..+...+|.+.+++..+.+. .......++..+++..++.++.||+|||+
T Consensus 281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ 360 (513)
T KOG0254|consen 281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK 360 (513)
T ss_pred cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 2245666665566677778888999999999999999999999888774 45677788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 016428 353 LLQWSFFSMAVSMAIQVAASS 373 (390)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~ 373 (390)
.++.+...+.++++++.....
T Consensus 361 lll~s~~~m~~~~~~~~~~~~ 381 (513)
T KOG0254|consen 361 LLLFGAAGMSICLVILAVVGV 381 (513)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999888775533
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=256.94 Aligned_cols=324 Identities=17% Similarity=0.219 Sum_probs=225.9
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcccccccchhhhhhcc-c--cCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHH
Q 016428 44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL-G--FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120 (390)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~ 120 (390)
+..+.++..+.++.++.+.++++...++...|.+.+++ + ...+..+.+++.+.+.++..+++++.|+++||+|||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~ 88 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRV 88 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 33455677788888999999999999999988877643 1 11122234899999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHhhhh------HHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHH
Q 016428 121 FQLCALPMIIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL 194 (390)
Q Consensus 121 l~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 194 (390)
+.++.++..++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++++++.+....+|..+++
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876 788999999999999999999999999999999999999999999999998888
Q ss_pred Hhcccccc-----------------------cCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHH-HHHHHHHH
Q 016428 195 LIGIPVKE-----------------------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTA-EAEAEFEK 250 (390)
Q Consensus 195 ~~~~~l~~-----------------------~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~-~~~~~~~~ 250 (390)
.++..+.. ..+ ||+.|.+.+++.++..+..+++||+|+|+..+++.+ ++.+.+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~ 247 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA 247 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhccc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence 87654321 124 999999888888887777788999999998877764 35555555
Q ss_pred HhCCCCchhHHHHhhhcccCCCCccchhhhhhccc---chhHHHHH-HHHHH---HHHhhchhhHHHhHHHHHhhcCCCc
Q 016428 251 LLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR---HFRVVFIG-STLFA---LQQLSGINAIFYFSSSVFKSAGLSS 323 (390)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (390)
....+...+ .++.++.+++++....+++++++++ +.++..+. ....+ ...++...+.|.++.+ .+.+....
T Consensus 248 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~ 325 (502)
T TIGR00887 248 VLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAA 325 (502)
T ss_pred HhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCcc
Confidence 443221111 1111111111111223577777532 22222222 11111 1222222233444432 23222111
Q ss_pred h-----------H-HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHH
Q 016428 324 G-----------L-ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370 (390)
Q Consensus 324 ~-----------~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 370 (390)
+ . ......++.+++.++.++++||+|||+.+.++..++++++.++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~ 384 (502)
T TIGR00887 326 TNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF 384 (502)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 1 0 223344566778899999999999999988888777777665554
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=257.73 Aligned_cols=291 Identities=18% Similarity=0.204 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchh--hHH--HHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhH
Q 016428 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLA--EGL--VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA 125 (390)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~--~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~ 125 (390)
++.+....++.+++++|...++...|.+.++++.+.++.. .+. +.++.++++.+++++.|+++||+|||+++..++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3456677889999999999999999999999976554421 111 247788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHH--------HHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhc
Q 016428 126 LPMIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG 197 (390)
Q Consensus 126 ~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 197 (390)
++++++++++++++|+.. ++++|+++|++.|..++....+++|++|+++|+++.++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 788999999999999999999999999999999999999988888888777654
Q ss_pred cccc--------ccCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhccc
Q 016428 198 IPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDR 269 (390)
Q Consensus 198 ~~l~--------~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (390)
..+. ...| ||+.|++.+++.++..++...+||+|++...+++.++..+ +.
T Consensus 175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------------------~~ 232 (490)
T PRK10642 175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------------------EG 232 (490)
T ss_pred HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------------------cc
Confidence 3332 2456 9999999877666655555678999886533221111000 00
Q ss_pred CCCCccchhhhhhcccchhHHHHHH---HHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 016428 270 GDDGDIVKFEELLYGRHFRVVFIGS---TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD 346 (390)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 346 (390)
..+.+..++++++++ +.+...... ++.....+....+.|.|+...++.+............++.+++.++.|+++|
T Consensus 233 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 311 (490)
T PRK10642 233 LQDGPKVSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD 311 (490)
T ss_pred ccccccCCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112235555553 222222211 2222333344445666655444433333444556667888899999999999
Q ss_pred hhCChHHHHHHHHHHHH
Q 016428 347 KLGRKALLQWSFFSMAV 363 (390)
Q Consensus 347 ~~g~~~~~~~~~~~~~~ 363 (390)
|+|||+.+..+.++..+
T Consensus 312 r~grr~~~~~~~~~~~~ 328 (490)
T PRK10642 312 RFGRRPFVILGSVALFV 328 (490)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 99999988777654443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=250.11 Aligned_cols=318 Identities=30% Similarity=0.513 Sum_probs=231.4
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhcc--------ccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL--------GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr 118 (390)
+...+..+++.++.+.++++...+++..|.+.+++ +.+..+. +++.++++++..++++++|+++||+|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr 85 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRR 85 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34456677777889999999999999999998887 5555555 8999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHhh------------hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHH
Q 016428 119 RAFQLCALPMIIGASISATT------------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIAT 186 (390)
Q Consensus 119 ~~l~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 186 (390)
++++.+.++++++.+.++++ +++..++++|+++|++.|...+...++++|++|+++|++++++.+.+.
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 165 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI 165 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence 99999999999998888763 235678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccc--------ccCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCch
Q 016428 187 CLGLMGSLLIGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVK 258 (390)
Q Consensus 187 ~~G~~~~~~~~~~l~--------~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (390)
.+|..+++.+++.+. +..+ ||+.|++.+++.++..+..+++||+|+++..+++.++.++..++..+.....
T Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
T PRK10077 166 IFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT 244 (479)
T ss_pred HHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH
Confidence 999998887765432 3445 9999999888877776667789999998877777777666666554433222
Q ss_pred hHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCC---chHHHHHHHHHHH
Q 016428 259 SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANL 335 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 335 (390)
....+..+..+.+.. ..+..+. ..............+......+...+|.+...+..+.+ ........++..+
T Consensus 245 ~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~ 320 (479)
T PRK10077 245 QALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINL 320 (479)
T ss_pred HHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 222111111000000 0011111 01111111122222233333444455556655544443 3445666788899
Q ss_pred HHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHh
Q 016428 336 LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 336 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
++.++.++++||+|||+.+..+..+++++.+++...
T Consensus 321 i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~ 356 (479)
T PRK10077 321 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 356 (479)
T ss_pred HHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999888887776544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=246.70 Aligned_cols=322 Identities=30% Similarity=0.566 Sum_probs=233.3
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccC------CcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN------GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~ 120 (390)
++.+...+++.++.+...++.....+..|.+.++++.+ .++.+.+++.+++.++..++++++|+++||+|||++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~ 103 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS 103 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence 33344455666677788888988999999999998887 334455999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhc
Q 016428 121 FQLCALPMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG 197 (390)
Q Consensus 121 l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 197 (390)
++.+.++++++.+++.+. .+++.++++|+++|++.+...+....+++|++|+++|++++++.+.+..+|..+++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999998654 34568999999999999999999999999999999999999999999999999999999
Q ss_pred ---ccccccCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHh----hh-ccc
Q 016428 198 ---IPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL----SK-LDR 269 (390)
Q Consensus 198 ---~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~ 269 (390)
....+..+ ||+.|++.++..++.++..+++||+|++...+++.++..+..++....+.......+. .. .+.
T Consensus 184 ~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (481)
T TIGR00879 184 SGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI 262 (481)
T ss_pred HHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence 66666667 9999999777777766667788999987766666555544444433322211111100 00 000
Q ss_pred CCCCccchhhhhhccc--chhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCC---chHHHHHHHHHHHHHHHHHHHH
Q 016428 270 GDDGDIVKFEELLYGR--HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVL 344 (390)
Q Consensus 270 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l 344 (390)
+.+.....+.+.++.. ..+..+....+..+...........+.+...+..+.+ .+.......++.+++.++.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 342 (481)
T TIGR00879 263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFL 342 (481)
T ss_pred HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111133333322 1333444444444444444444455555554444444 3557777888899999999999
Q ss_pred HhhhCChHHHHHHHHHHHHHHHHHH
Q 016428 345 MDKLGRKALLQWSFFSMAVSMAIQV 369 (390)
Q Consensus 345 ~d~~g~~~~~~~~~~~~~~~~~~~~ 369 (390)
.||++||+.+.++.++.+++++++.
T Consensus 343 ~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
T TIGR00879 343 VDRFGRRPLLLIGAAGMAICLFVLG 367 (481)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHH
Confidence 9999999998888887777766655
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=249.06 Aligned_cols=279 Identities=17% Similarity=0.185 Sum_probs=216.3
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
+|..+..+.++.+..........+.+|.+.+++|.+.++. |++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3544555555555544444455677899999999988877 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhH
Q 016428 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (390)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr 208 (390)
+++++.+++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|++++.+.+..+ ||
T Consensus 85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~ 163 (390)
T PRK03545 85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WR 163 (390)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999888878 99
Q ss_pred HHHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccch
Q 016428 209 ICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF 287 (390)
Q Consensus 209 ~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
+.|++.++..++..+.. ..+||+|+ +++ + +..+.++.++++.+
T Consensus 164 ~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~-~-------------------------------~~~~~~~~~~~~~~ 207 (390)
T PRK03545 164 TTFLAIGGGALITLLLLIKLLPLLPS----EHS-G-------------------------------SLKSLPLLFRRPAL 207 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC----CCc-c-------------------------------hHHHHHHHHhCcHH
Confidence 99999887776655443 33565432 000 0 01124457777877
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 016428 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (390)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 367 (390)
+......++.....+....+.+.+..+..+.+....+......+++.++++++.+++.||+++|... .+..+..++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~ 286 (390)
T PRK03545 208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLL 286 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHH
Confidence 7665555555544444455566666555555555567777888899999999999999999987653 444444444433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=244.90 Aligned_cols=282 Identities=18% Similarity=0.105 Sum_probs=203.0
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccC-CcchhhHHHHHHh---HHHHHHHHHhHHHhhchhhhHHHHHHh
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN-GNTLAEGLVVSMC---LGGAFIGSTLSGWIADGVGRRRAFQLC 124 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~s~~---~~~~~i~~~~~g~l~d~~Grr~~l~~~ 124 (390)
++..+...+++.++++++...++...|.+.++++.+ .+..+.+...+++ .++..++++++|+++||+|||+++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 445566777888999999999999999999998632 1122223444444 445559999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHh
Q 016428 125 ALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI 196 (390)
Q Consensus 125 ~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 196 (390)
.++++++++++++++++. .++++|+++|++.|..++...++++|++|+++|+++.++...+...|..+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998874 588999999999999999999999999999999999999988888888887766
Q ss_pred ccccc--------ccCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcc
Q 016428 197 GIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLD 268 (390)
Q Consensus 197 ~~~l~--------~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (390)
...+. +..| ||+.|++.+++.++.......+||+|++.. + +
T Consensus 180 ~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~--~---------------------- 228 (432)
T PRK10406 180 VVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQET------R--A---------------------- 228 (432)
T ss_pred HHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h--h----------------------
Confidence 54432 2356 999999988877766555555777654210 0 0
Q ss_pred cCCCCccchhhhhhcccchhHHHHHHHHH-HHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 016428 269 RGDDGDIVKFEELLYGRHFRVVFIGSTLF-ALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK 347 (390)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 347 (390)
.+ +..++++++++++.+...+...+. ....+....++|.|+.+.++.+..+.+.......++..++.++.|+++||
T Consensus 229 ~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr 305 (432)
T PRK10406 229 LK---EAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK 305 (432)
T ss_pred hc---ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 012356677777666544443332 33334444556666554444333334555666677778888899999999
Q ss_pred hCChHHHHHHHHHHHHH
Q 016428 348 LGRKALLQWSFFSMAVS 364 (390)
Q Consensus 348 ~g~~~~~~~~~~~~~~~ 364 (390)
++||+.+.++.++.++.
T Consensus 306 ~grr~~~~~~~~~~~~~ 322 (432)
T PRK10406 306 IGRRTSMLCFGSLAALF 322 (432)
T ss_pred cCchHHHHHHHHHHHHH
Confidence 99998877665544333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=249.72 Aligned_cols=292 Identities=22% Similarity=0.312 Sum_probs=229.7
Q ss_pred cchhhhhhccccC---CcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHH
Q 016428 72 EPLESISLDLGFN---GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR 148 (390)
Q Consensus 72 ~~~~~~~~~~~~~---~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 148 (390)
+..|.+.+|+|++ ..+. +++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++++|++.++++|
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r 187 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187 (505)
T ss_pred cccccEEEEecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5678899999997 4444 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcc
Q 016428 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228 (390)
Q Consensus 149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~ 228 (390)
++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+.+ ||+.|++.+++.++..+..+++
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998876653 9999999888888777777889
Q ss_pred cCChhhHHhcCCHHHHHHHHHHHhCCCCchh--HHHHhh-hcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhch
Q 016428 229 AESPHWLYKKGRTAEAEAEFEKLLGGSHVKS--SLAELS-KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI 305 (390)
Q Consensus 229 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (390)
||+|+|+..+++.+++.+.+++..+.+.... +..+.. +.+..++.+..+.+++++++.++...+...+.++.....+
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888777766543322111 111110 0111111223467889999888877766655554433333
Q ss_pred hhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhcc
Q 016428 306 NAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS 373 (390)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 373 (390)
..++.+.+. .+.+........++..+++.++.+++.||+|||+.+.++.++.+++++++.+.+.
T Consensus 344 ~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~ 407 (505)
T TIGR00898 344 YGLVLDLGN----LGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV 407 (505)
T ss_pred HHHhccccc----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333333332 2333445566778888999999999999999999999998888888877766544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-31 Score=241.37 Aligned_cols=299 Identities=17% Similarity=0.206 Sum_probs=223.3
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
+.+++.+..+.++.+.++++.....+..|.+.+++|+++.+. +++.+++.+++.+++++.|+++||+|||++++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 445666778888889999999999999999999999988776 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch
Q 016428 127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~ 206 (390)
+.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~- 170 (426)
T PRK12307 92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG- 170 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888888777
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccc
Q 016428 207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH 286 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (390)
||+.|++..+..++........||++++..++.+ + .. +..+...+....+++++++++.
T Consensus 171 w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~--~----------~~---------~~~~~~~~~~~~~~~~~~~~~~ 229 (426)
T PRK12307 171 WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS--G----------KG---------KHSQSAWSVFSLSMKGLFNRAQ 229 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh--c----------cc---------cccccchhhhhHHHHHHHhhch
Confidence 9999988654443333322334555432111100 0 00 0000000111234667888887
Q ss_pred hhHHHHHHHHHHHHH---hhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 016428 287 FRVVFIGSTLFALQQ---LSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 363 (390)
Q Consensus 287 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 363 (390)
++............. +....++|.|..+ .+.+....+.......++.+++.++.+++.||++||+....+.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~ 308 (426)
T PRK12307 230 FPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFL 308 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 765544333222221 1223445555543 233223345566778889999999999999999999988888777666
Q ss_pred HHHHHHH
Q 016428 364 SMAIQVA 370 (390)
Q Consensus 364 ~~~~~~~ 370 (390)
.++.+..
T Consensus 309 ~~~~~~~ 315 (426)
T PRK12307 309 FIFPLFR 315 (426)
T ss_pred HHHHHHH
Confidence 6554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=238.93 Aligned_cols=305 Identities=19% Similarity=0.214 Sum_probs=222.3
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
+++|+.+..++++.+.++++....++..|.+.+++|.+.++. +++.+.+.++..+++++.|+++||+|||++++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 456778889999999999999999999999999999988877 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc-
Q 016428 127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG- 205 (390)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g- 205 (390)
+.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++.++...+..+|..+++.+++.+.+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888776543
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhccc
Q 016428 206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR 285 (390)
Q Consensus 206 ~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (390)
.||+.|++.++..++..+.....||++++..+++++++..+..++..+...... ...++.....++. .+
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~~ 234 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA---------NIVMTLAAAMVQS--AG 234 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh---------hhhhhhhHHhhhh--hh
Confidence 399999887766666655556678876543322221111111111111000000 0000000001111 11
Q ss_pred chhH----HHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 016428 286 HFRV----VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM 361 (390)
Q Consensus 286 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 361 (390)
..+. .................+.+.|..+..+.+..+.+.......++.+++.++.+++.||++||+.+.++..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~ 314 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG 314 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence 1111 112222222222233345566665555544445666777888999999999999999999999887776655
Q ss_pred HHH
Q 016428 362 AVS 364 (390)
Q Consensus 362 ~~~ 364 (390)
.+.
T Consensus 315 ~~~ 317 (405)
T TIGR00891 315 QLL 317 (405)
T ss_pred HHH
Confidence 333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=251.70 Aligned_cols=312 Identities=20% Similarity=0.232 Sum_probs=244.3
Q ss_pred HHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHH
Q 016428 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (390)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~ 131 (390)
.+..++++.++..++....++.+|.+.+++|.+.++. +|+.+.+.++..++.++.|+++||+|||++++.+.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999999988777 89999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHH
Q 016428 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (390)
Q Consensus 132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f 211 (390)
.+++++++|++.++++|+++|++.+...+....++.|++|+++|+++.+++.....+|..++|.+++.+.+..+ ||+.|
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f 159 (485)
T TIGR00711 81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIF 159 (485)
T ss_pred HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHH--------H--HHhCCCCc--hh-HHHH-----------hhh
Q 016428 212 WVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEF--------E--KLLGGSHV--KS-SLAE-----------LSK 266 (390)
Q Consensus 212 ~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~--------~--~~~~~~~~--~~-~~~~-----------~~~ 266 (390)
++.+++.++..+.. ++.||+++. ++++.+.....+ . ...+.... .. .... ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV 237 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99877766655444 446664321 111111110000 0 00011000 00 0000 000
Q ss_pred cccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 016428 267 LDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD 346 (390)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 346 (390)
.+. +++++....+++++++++...+..++.....+.....+|.|+++.++.+..+.+....+..++.+++.++.|++.|
T Consensus 238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~ 316 (485)
T TIGR00711 238 WEL-TDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD 316 (485)
T ss_pred HHH-cCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011 1111222346888899888888877777777777778888888877777777788888899999999999999999
Q ss_pred hhCChHHHHHHHHHHHHHHHHHH
Q 016428 347 KLGRKALLQWSFFSMAVSMAIQV 369 (390)
Q Consensus 347 ~~g~~~~~~~~~~~~~~~~~~~~ 369 (390)
|++||+.+.++..+.++++.++.
T Consensus 317 r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 317 KIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999888888888877665
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=254.31 Aligned_cols=304 Identities=16% Similarity=0.087 Sum_probs=226.4
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
+..+..+.+++++++..+.++..+++..|.+.+|+|++..+. |++.+++.+++.+++++.|+++||+|||+++..+.+
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~ 102 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI 102 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence 445667778888888889999999999999999999988776 999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHh-----hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc
Q 016428 127 PMIIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (390)
Q Consensus 127 ~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 201 (390)
+++++.+..++ ++|++.+++.|+++|++.+...+...++++||+|+++|+++++++..+..+|..+++++...+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 88887776665 6899999999999999999999999999999999999999999999999999999988876655
Q ss_pred ccC--chhHHHHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccch-
Q 016428 202 EIA--GWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK- 277 (390)
Q Consensus 202 ~~~--g~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 277 (390)
+.. ++||..|.+.+++.++..+.. ++.+++|+.. +..++ ++..+ .. ...+ + +..++.+......
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~~~---~~--~~~~--~-~~~~~~~~~~~~~~ 250 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEIFG---EP--ISEE--D-KETESTDMTKWQIF 250 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhccc---Cc--cchh--h-hccccccCcHHHHH
Confidence 432 238998888777666554444 4456665421 11010 00000 00 0000 0 0000000000111
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q 016428 278 FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS 357 (390)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 357 (390)
.++.++++.+|...+..++..........+.|.|+.+.++.+..+++.......++.+++.++.|+++||++||+.....
T Consensus 251 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~ 330 (467)
T PRK09556 251 VEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVAC 330 (467)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 22367888888888777777766666677888888776666665667777788889999999999999999998876655
Q ss_pred HHHHHHH
Q 016428 358 FFSMAVS 364 (390)
Q Consensus 358 ~~~~~~~ 364 (390)
..+..++
T Consensus 331 ~~~~~~~ 337 (467)
T PRK09556 331 IALALII 337 (467)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=235.55 Aligned_cols=266 Identities=17% Similarity=0.144 Sum_probs=205.3
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
.|+.+..+.++.+..........+.+|.+.+++|.++++. |+..+++.++..+++++.|+++||+|||++++.+.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~ 95 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL 95 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence 4555555555555555555455667899999999988877 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhH
Q 016428 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (390)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr 208 (390)
+++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|+++.++...+.++|..++|.+++.+.+..+ ||
T Consensus 96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~ 174 (394)
T PRK10213 96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WR 174 (394)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888 99
Q ss_pred HHHHHHHHHHHHHHHHhh-cccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccch
Q 016428 209 ICFWVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF 287 (390)
Q Consensus 209 ~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
+.|++.++..++..+... ..||+|+ + ++ +...+.++.+++|.+
T Consensus 175 ~~f~~~~~l~~~~~l~~~~~~p~~~~----~-~~-------------------------------~~~~~~~~~l~~~~~ 218 (394)
T PRK10213 175 NVFNAAAVMGVLCIFWIIKSLPSLPG----E-PS-------------------------------HQKQNTFRLLQRPGV 218 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCc----c-cc-------------------------------cchhHHHHHhcCHHH
Confidence 999987766665544333 3565431 0 00 001123456777777
Q ss_pred hHHHHHHHHHHHHHhhchhhH-HHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHH
Q 016428 288 RVVFIGSTLFALQQLSGINAI-FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALL 354 (390)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 354 (390)
+...+..++.....+....++ |.+.. .++.+....+......+++.+++.++.+++.||.+++...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~ 285 (394)
T PRK10213 219 MAGMIAIFMSFAGQFAFFTYIRPVYMN-LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALA 285 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 776655555444444433443 44433 3344444456778888899999999999999996444333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-30 Score=234.33 Aligned_cols=291 Identities=20% Similarity=0.254 Sum_probs=222.1
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
+++|..+.++++..+.++++....+...|.+.+++|.++++. |++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 466888888889999999999999999999999999987776 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch
Q 016428 127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~ 206 (390)
+.+++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~- 167 (406)
T PRK11551 89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA- 167 (406)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred hHHHHHHHHHHHHHHHH-HhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcc-
Q 016428 207 WRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG- 284 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 284 (390)
||+.|++.++..++..+ ...++||+|++..++.+.++.++. .++.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 217 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPV------------------------------LRALFGEG 217 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhh------------------------------HHHHhhhh
Confidence 99999987665555443 345578887543222111110000 0011111
Q ss_pred --cchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 016428 285 --RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 362 (390)
Q Consensus 285 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 362 (390)
+..+......++.....+....+.|.+..+ .+.+..+.+.......++.+++.++.|++.||+++|+.+..+.+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 296 (406)
T PRK11551 218 RATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL 296 (406)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112222222223233333333445555543 34444456777888889999999999999999999998877666666
Q ss_pred HHHHHHHHh
Q 016428 363 VSMAIQVAA 371 (390)
Q Consensus 363 ~~~~~~~~~ 371 (390)
++++.+...
T Consensus 297 ~~~~~~~~~ 305 (406)
T PRK11551 297 ASLAALAAA 305 (406)
T ss_pred HHHHHHHhc
Confidence 665554433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=233.23 Aligned_cols=281 Identities=13% Similarity=0.072 Sum_probs=214.5
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
.|.....++.+.+.... ....++.+|.+.+|+|++.++. |++.+.+.+++.+++++.|+++||+|||+++..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~ 84 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLI 84 (393)
T ss_pred HHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHH
Confidence 34444444444333333 3667899999999999988877 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhH
Q 016428 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (390)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr 208 (390)
+++.+.+++++|++.++++|+++|++.+...+....++.|++| ++|+++++++..+...|..+++.+++.+.++..+||
T Consensus 85 ~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~ 163 (393)
T PRK09705 85 AVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWY 163 (393)
T ss_pred HHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999999999999999998999999997 789999999999999999999999988887752399
Q ss_pred HHHHHHHHHHHHHHHHhhccc-CChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccch
Q 016428 209 ICFWVSIVPAAILCLAMVFCA-ESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF 287 (390)
Q Consensus 209 ~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
+.+.+.++..++..+..+... +.|+ + ++ ++ ..+.++.+++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~-------------------------~~----~~~~~~~l~~~~~ 207 (393)
T PRK09705 164 QTLAWWALPAVVALFAWWWQSAREVA-----S--SH-------------------------KT----TTTPVRVVFTPRA 207 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc-----c--cc-------------------------CC----CcCCcccccCHhH
Confidence 988765555444333332221 1110 0 00 00 0012334456666
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 016428 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (390)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 367 (390)
+...+...+..........+.|.|+.+ ++.+..+.+......+++.++++++.+++.||++||+....+..+..++..+
T Consensus 208 ~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~ 286 (393)
T PRK09705 208 WTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCG 286 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 666655555555555666677777765 4555556777888899999999999999999999999888888777777665
Q ss_pred HHH
Q 016428 368 QVA 370 (390)
Q Consensus 368 ~~~ 370 (390)
+..
T Consensus 287 ~~~ 289 (393)
T PRK09705 287 FIW 289 (393)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=241.68 Aligned_cols=288 Identities=14% Similarity=0.100 Sum_probs=227.7
Q ss_pred chhhhHHHHHHHHHHHhhhhcccccccchhhhhh----------------------ccccCCcchhhHHHHHHhHHHHHH
Q 016428 46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISL----------------------DLGFNGNTLAEGLVVSMCLGGAFI 103 (390)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~g~~~s~~~~~~~i 103 (390)
.+.+|....+++++....+.++..++...+.+.+ |++++..+. |++.+.+.+++.+
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~ 91 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQII 91 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHHH
Confidence 3455777777888888889999988888888876 677776665 9999999999999
Q ss_pred HHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHH
Q 016428 104 GSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF 181 (390)
Q Consensus 104 ~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 181 (390)
++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999998887554 5688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccc-CchhHHHHHHHHHHHHHHHHHhhc-ccCChhhHHhcCCHHHHHHHHHHHhCCCCchh
Q 016428 182 IQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKS 259 (390)
Q Consensus 182 ~~~~~~~G~~~~~~~~~~l~~~-~g~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (390)
...+..+|..+++++++.+.+. .+ ||+.|++.++..++..+.+++ .+|+|+... ...++.++..+.
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~i~~--------- 239 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIHP--CISKFEKKYINS--------- 239 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHh---------
Confidence 9999999999999999998887 47 999999988877776665544 556664211 111111111110
Q ss_pred HHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016428 260 SLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSV 339 (390)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (390)
..+.++.+.+....++++++++.++...+..+......+....++|.|+.+.++.+..+.+.......++.+++.+
T Consensus 240 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~ 315 (465)
T TIGR00894 240 ----SLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSI 315 (465)
T ss_pred ----hcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHH
Confidence 0000011112234578899999999888888887777777777888888777777777778888888999999999
Q ss_pred HHHHHHhhhCCh
Q 016428 340 VAMVLMDKLGRK 351 (390)
Q Consensus 340 ~~g~l~d~~g~~ 351 (390)
+.|+++||+++|
T Consensus 316 ~~g~l~d~~~~~ 327 (465)
T TIGR00894 316 FAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHc
Confidence 999999997543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=237.42 Aligned_cols=279 Identities=13% Similarity=0.158 Sum_probs=216.4
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~ 132 (390)
+....+..+..+.......+.+|.+.+|+|.+.++. |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 445666777788888888899999999999988776 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHH
Q 016428 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (390)
Q Consensus 133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~ 212 (390)
+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++++++.+.+..+ ||+.|+
T Consensus 83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~ 161 (382)
T PRK10091 83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFL 161 (382)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHH
Confidence 9999999999999999999999999888888899999999999999999999999999999999999888877 999999
Q ss_pred HHHHHHHHHHHH-hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHH
Q 016428 213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (390)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (390)
+.++..++..+. ..++||.++ +.+.+. .+..+.++++..+...
T Consensus 162 ~~~~~~~~~~~~~~~~lp~~~~----~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 205 (382)
T PRK10091 162 LIAVFNIAVLASIYFWVPDIRD----EAKGGL--------------------------------REQFHFLRSPAPWLIF 205 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCCCc----ccccCH--------------------------------HHHHHHhcChHHHHHH
Confidence 987766655443 345676532 100000 0011234445555444
Q ss_pred HHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHH
Q 016428 292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370 (390)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 370 (390)
....+.....+....+.+.+..+..+.+....+......+++.++++++.+++.||+++|+.+..+..+.+++.+++..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~ 284 (382)
T PRK10091 206 AATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFF 284 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHH
Confidence 3333332222222333344444444444445666778889999999999999999999999988888877777655543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=233.35 Aligned_cols=289 Identities=18% Similarity=0.107 Sum_probs=201.9
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhh-hhhcc--ccCCcchhhHHHH-----HHhHHHHHHHHHhHHHhhchhhhH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLES-ISLDL--GFNGNTLAEGLVV-----SMCLGGAFIGSTLSGWIADGVGRR 118 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~g~~~-----s~~~~~~~i~~~~~g~l~d~~Grr 118 (390)
.++++.+....++.+.++++...++...|. +.+++ +.++.+ +++. ++.+++..+++++.|+++||+|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr 94 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence 344566777888899999999988877764 45555 555442 5553 344566789999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHH
Q 016428 119 RAFQLCALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL 190 (390)
Q Consensus 119 ~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 190 (390)
++++.+.++++++++++++++|+. .++++|+++|++.|..++....++.|++|+|+|++..+....+..+|.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~ 174 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL 174 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999987 588899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccc--------cCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHH
Q 016428 191 MGSLLIGIPVKE--------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA 262 (390)
Q Consensus 191 ~~~~~~~~~l~~--------~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (390)
.++..+...+.. ..+ ||+.|++.+++.++........||+|++...+++.++
T Consensus 175 ~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------------------- 234 (438)
T PRK09952 175 LLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------------------- 234 (438)
T ss_pred HHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc-------------------
Confidence 888776655432 346 9999998877765554444557888764322211000
Q ss_pred HhhhcccCCCCccchhhhhhcccchhHHHH-HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Q 016428 263 ELSKLDRGDDGDIVKFEELLYGRHFRVVFI-GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVA 341 (390)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (390)
. +.+....+.++++++.+.... ..++.....+....+.+.|..+.++.+...........++..+++.++.
T Consensus 235 -------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~ 306 (438)
T PRK09952 235 -------A-KKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCF 306 (438)
T ss_pred -------c-cccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000011223445555444432 2233333334444556666654443322212234445667778888999
Q ss_pred HHHHhhhCChHHHHHHHHHHHHHHH
Q 016428 342 MVLMDKLGRKALLQWSFFSMAVSMA 366 (390)
Q Consensus 342 g~l~d~~g~~~~~~~~~~~~~~~~~ 366 (390)
|+++||+|||+.+..+.++..++..
T Consensus 307 g~l~Dr~grr~~~~~~~~~~~~~~~ 331 (438)
T PRK09952 307 AWLADRFGRRRVYITGALIGTLSAF 331 (438)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHH
Confidence 9999999999988877666555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=241.70 Aligned_cols=283 Identities=16% Similarity=0.109 Sum_probs=214.5
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
++.......+..+...++...++..+|.+.+++|.+.++. |++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 3455566677778888888888899999999999987776 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhH
Q 016428 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (390)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr 208 (390)
+++.+++++++|++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ ||
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~ 177 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WR 177 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999988888 99
Q ss_pred HHHHHHHHHHHHHH-HHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccch-h-hhhhccc
Q 016428 209 ICFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK-F-EELLYGR 285 (390)
Q Consensus 209 ~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 285 (390)
+.|++.+++.++.. +..++++|+|++...+...++.++. + +..+..+.++.+..+ + ...++++
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-L-------------ELAQQQEGAGLSRKEILTKYVLLNP 243 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-c-------------ccchhccccCCChhhhHHHHHhcCh
Confidence 99998777665543 3445578876532111000000000 0 000000000000111 1 1255677
Q ss_pred chhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 016428 286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL 348 (390)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 348 (390)
.++...+..++..........++|.|+.+.++.+..+.+.......++.++++++.|+++||+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 777766665555555555555677777555555555567778888899999999999999998
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=234.52 Aligned_cols=274 Identities=16% Similarity=0.107 Sum_probs=199.9
Q ss_pred hHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHH
Q 016428 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (390)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~ 129 (390)
++.+...+...+...+......+..|.+.+++|++.++. +++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~ 112 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445555555666666666667888999999999988776 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc----c---
Q 016428 130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK----E--- 202 (390)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~----~--- 202 (390)
++.++++++++++.++++|+++|++.+... ....+++|++|+++|++++++......+|..+++.+.+.+. +
T Consensus 113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 191 (476)
T PLN00028 113 PAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA 191 (476)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999988654 45567899999999999999998777777666655544332 1
Q ss_pred --cCchhHHHHHHHHHHHHHHHHHhhcccCC-hhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhh
Q 016428 203 --IAGWWRICFWVSIVPAAILCLAMVFCAES-PHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE 279 (390)
Q Consensus 203 --~~g~wr~~f~~~~~~~~~~~~~~~~~~e~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (390)
..+ ||+.|++.+++.++..+..++++++ |+ ++.++.. + +.+.++.+....++
T Consensus 192 ~~~~g-Wr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~----~---------------~~~~~~~~~~~~~~ 246 (476)
T PLN00028 192 PSFTA-WRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK----K---------------SGTMPKDSFSKVLR 246 (476)
T ss_pred cchhh-hHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH----h---------------cCccccccHHHHHH
Confidence 235 9999999888777766655555443 31 1111000 0 00000001112345
Q ss_pred hhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCh
Q 016428 280 ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK 351 (390)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 351 (390)
+.++++++|...+..++..........++|.|+.+.++.+..+++.......++.++++++.|+++||++||
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 247 YGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 667778877766665555444444455667776655555555567788888999999999999999999765
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=229.33 Aligned_cols=283 Identities=18% Similarity=0.165 Sum_probs=223.8
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH
Q 016428 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~ 133 (390)
..+.+..+....+.....+..|.+.+++|.++++. +++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 85 (385)
T TIGR00710 8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSL 85 (385)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHH
Confidence 33444445566777788899999999999988776 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHH
Q 016428 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
.++++++++.+++.|+++|++.+...+....++.|++|+++|+++.++.+....+|..+++.+++.+.+..+ ||+.|++
T Consensus 86 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~ 164 (385)
T TIGR00710 86 GLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAF 164 (385)
T ss_pred HHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888877 9999998
Q ss_pred HHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHH
Q 016428 214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (390)
Q Consensus 214 ~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (390)
.++..++..+.. ++.||+++. +++++. ++.....++++++++++...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 213 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLPY----EARIQI---------------------------STYFETFLLLLKSKMFWGYAL 213 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC----cccCCH---------------------------HHHHHHHHHHHcCchhHHHHH
Confidence 777666655444 446665321 100000 000112455677788777666
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHH
Q 016428 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 370 (390)
...+............|.+..+.++.+....+.......++.+++.++.+++.||+++|+.+..+..+..++..++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (385)
T TIGR00710 214 IYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEI 291 (385)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 655555544444455566666555555555667777888999999999999999999999888887777776655544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=230.54 Aligned_cols=281 Identities=19% Similarity=0.190 Sum_probs=231.3
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHH
Q 016428 44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL 123 (390)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~ 123 (390)
...+..++.+.++++...+++.+...+....+.+.+.+|++++.. |++.+.+.+.+.+.+|+.|+++|||+||+++.+
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v 103 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV 103 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence 344555777889999999999999999999999999999999887 999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc
Q 016428 124 CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (390)
Q Consensus 124 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 203 (390)
|.++|+++.++++++..||++.++|.+.|+|.+...|+.+.+++|.+|..+|++++++++.+..+|..+|.+++..+.+.
T Consensus 104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhc-ccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhh
Q 016428 204 AGWWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL 282 (390)
Q Consensus 204 ~g~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (390)
.++|||.|+..+++.+++.++.++ .+|+++ +..++..+. .+..........+.+.+.
T Consensus 184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~~-----------------~~~~~~~ts~~kDl~~l~ 241 (493)
T KOG1330|consen 184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDGE-----------------NKMVKPFTSVWKDLKVLA 241 (493)
T ss_pred ccceEEEEEeehHHHHHHHHHHHhhccCccc-----ccccccccC-----------------CcCCCCccchHHHHHHHH
Confidence 888999999999998888776654 555532 211110000 000111222334455566
Q ss_pred cccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCC---chHHHHHHHHHHHHHHHHHHHHHhhh
Q 016428 283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKL 348 (390)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~ 348 (390)
+++.+....+.+....+...+...+.|.+.+..+...+.+ ...+..+...++.+|.+++|.++||+
T Consensus 242 ~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 242 KIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred ccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence 7788888777777777777776777777777766665433 33366777888999999999999994
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=225.59 Aligned_cols=278 Identities=12% Similarity=0.054 Sum_probs=213.8
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhh-ccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA 125 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~ 125 (390)
+..++.+.+..++.++........++..+.+.+ ++|++.+|. +++.+++.+++.++.++.|++.||+|.|+++.++.
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ 107 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFST 107 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 334566777777777778888888998888876 899998877 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccc
Q 016428 126 LPMIIGASISATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (390)
Q Consensus 126 ~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 200 (390)
+++++.++..+++ ++++.+++.|++.|++ |..++.....+++|+|+++||+++|+.....++|..+++++...+
T Consensus 108 ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~ 186 (462)
T PRK15034 108 AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV 186 (462)
T ss_pred HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999987 8999999999999998 667888999999999999999999999766666665554444322
Q ss_pred c-----c-------------cCchhHHHHHHHHHHHHHHHHHhhcc-cCChhhHHhcCCHHHHHHHHHHHhCCCCchhHH
Q 016428 201 K-----E-------------IAGWWRICFWVSIVPAAILCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261 (390)
Q Consensus 201 ~-----~-------------~~g~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (390)
. . ..+ ||...++..++.++..+..+++ ++.|+ +
T Consensus 187 i~~~l~~~~G~~~~~~~~g~~~~-~~~~~~~~~~~~iv~~i~~~~~~~~~~~----~----------------------- 238 (462)
T PRK15034 187 IFVPVFAFLGVNGVPQADGSVMS-LANAAWIWVPLLAIATIAAWSGMNDIAS----S----------------------- 238 (462)
T ss_pred HHHHHHHHhccccccccccchHH-HHHHHHHHHHHHHHHHHHHHHhCCCccc----c-----------------------
Confidence 1 1 223 8888888777666665555443 33221 0
Q ss_pred HHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Q 016428 262 AELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVA 341 (390)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (390)
+....+..+.+|+++.|...+.+++.+....+...++|+|..+.+. ............+...+.++++
T Consensus 239 ----------~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplg 306 (462)
T PRK15034 239 ----------RASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVG 306 (462)
T ss_pred ----------ccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhh
Confidence 0112235568889999999888888887777766688888766442 2222223444567888999999
Q ss_pred HHHHhhhCChHHHHHHHHHHHHHHHH
Q 016428 342 MVLMDKLGRKALLQWSFFSMAVSMAI 367 (390)
Q Consensus 342 g~l~d~~g~~~~~~~~~~~~~~~~~~ 367 (390)
|+++||+|+++++.++++.+.++...
T Consensus 307 G~LADRiG~~~vl~~~~i~~~i~~~~ 332 (462)
T PRK15034 307 GAISDKFGGVRVTLINFIFMAIFSAL 332 (462)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 99999999999998888877776644
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=229.50 Aligned_cols=292 Identities=16% Similarity=0.134 Sum_probs=227.7
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
++.+.....+.+..+...+....+.+.+|.+.+++|.+.++. ++..+.+.+++.+++++.|+++||+|||++++.+..
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 86 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 444666667777778888888888899999999999987776 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch
Q 016428 127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~ 206 (390)
+.+++.+.++++++++.+++.|+++|++.+...+....++.|++|+++|.+..++......+|..++|.+++.+.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~- 165 (406)
T PRK15402 87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP- 165 (406)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 9999999999999999999999999999998888888999999999999999999988888999999999999888777
Q ss_pred hHHHHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhccc
Q 016428 207 WRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR 285 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (390)
||+.|++.++..++..+.. +..||+++.. +++... ++...+++++++++
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------------------------~~~~~~~~~~~~~~ 215 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETAGRV----GEKLSL--------------------------KELGRDYKLVLKNR 215 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCccc----cccccH--------------------------HHHHHHHHHHHcCc
Confidence 9999998777766655543 4467664210 000000 00112345677888
Q ss_pred chhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 016428 286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM 365 (390)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 365 (390)
.++...+...+............|.+..+.++.+..+.+.......++.+++.++.+++.||+++|+.+.++.++..++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 88776666555544444434445666555555444445556666677888999999999999999999888888777777
Q ss_pred HHHHHh
Q 016428 366 AIQVAA 371 (390)
Q Consensus 366 ~~~~~~ 371 (390)
.++...
T Consensus 296 ~~~~~~ 301 (406)
T PRK15402 296 LLAALA 301 (406)
T ss_pred HHHHHH
Confidence 666544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=230.57 Aligned_cols=285 Identities=16% Similarity=0.137 Sum_probs=220.1
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
+++....+++..+..+......++.+|.+.+++|++.++. +++.+.+.+++.+++++.|+++||+|||++++.+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3556667778888888888889999999999999988777 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc-cCchh
Q 016428 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-IAGWW 207 (390)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~g~w 207 (390)
+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.. ..+ |
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w 161 (394)
T PRK03699 83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-W 161 (394)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H
Confidence 99999999999999999999999999998888888999999999999999999988889998899988877654 456 9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccch
Q 016428 208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF 287 (390)
Q Consensus 208 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
|+.|.+.+++.++..+..++ .+.|+. ++++.+ ++. +. .++. .++.+
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~~-------------------------~~~-~~----~~~~-~~~~~ 207 (394)
T PRK03699 162 YWVYACIGLVYVAIFILTLF-SEFPAL--GKHAPK-------------------------ADK-PV----AKEK-WGIGV 207 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCccc--cccCcc-------------------------ccC-cc----cccc-CChHH
Confidence 99999877766655444332 222210 000000 000 00 0001 12444
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 016428 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (390)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 367 (390)
+...+..++.....+....+.|.|+.+.++.+..+.+.......++..+++++.++++||+++|+.+.....+..+.+.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 287 (394)
T PRK03699 208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL 287 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 55555555555555566677888887766666666777788888899999999999999999999888777666665555
Q ss_pred HHH
Q 016428 368 QVA 370 (390)
Q Consensus 368 ~~~ 370 (390)
+..
T Consensus 288 ~~~ 290 (394)
T PRK03699 288 FVN 290 (394)
T ss_pred HHH
Confidence 443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=228.31 Aligned_cols=279 Identities=20% Similarity=0.245 Sum_probs=192.5
Q ss_pred hHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHh-----HHHHHHHHHhHHHhhchhhhHHHHHHh
Q 016428 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC-----LGGAFIGSTLSGWIADGVGRRRAFQLC 124 (390)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~-----~~~~~i~~~~~g~l~d~~Grr~~l~~~ 124 (390)
++....++++.+++++|...++...|.+.+|++.++.+.. ++..+.. .++..+++++.|+++||+|||++++.+
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 4467788899999999999999999999999998776641 2333332 222347899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHh
Q 016428 125 ALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI 196 (390)
Q Consensus 125 ~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 196 (390)
.+++++++++++++++++ .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 468899999999999999889999999999999999999988888887777777
Q ss_pred ccccc--------ccCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcc
Q 016428 197 GIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLD 268 (390)
Q Consensus 197 ~~~l~--------~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (390)
++.+. +..| ||+.|++.++...+........||++++..+++
T Consensus 173 g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~----------------------------- 222 (434)
T PRK15075 173 GYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH----------------------------- 222 (434)
T ss_pred HHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-----------------------------
Confidence 66542 3456 999998755443222222222333321100000
Q ss_pred cCCCCccchhhhhhcccchhHH-HHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 016428 269 RGDDGDIVKFEELLYGRHFRVV-FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK 347 (390)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 347 (390)
+.+....+++..+++..+.. ....++.....+....+.|.|+++.++.+..+.+.......++.+++.++.|+++||
T Consensus 223 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr 300 (434)
T PRK15075 223 --RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR 300 (434)
T ss_pred --ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000112222233222222 111222222233334455666655445444445566777888899999999999999
Q ss_pred hCChHHHHHHHHHH
Q 016428 348 LGRKALLQWSFFSM 361 (390)
Q Consensus 348 ~g~~~~~~~~~~~~ 361 (390)
++||+.+..+..+.
T Consensus 301 ~g~r~~~~~~~~~~ 314 (434)
T PRK15075 301 IGRRPVLIAFTVLA 314 (434)
T ss_pred hcchHHHHHHHHHH
Confidence 99999877665444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=225.47 Aligned_cols=248 Identities=13% Similarity=0.009 Sum_probs=185.1
Q ss_pred hhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHH
Q 016428 64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG 143 (390)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 143 (390)
......+++.+|.+.+|+|++.++. |++.+.+.+++.+++++.|+++||+|||+++..+......+.......+|++.
T Consensus 4 ~~~~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW 81 (368)
T ss_pred hHHHHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3445567889999999999988776 99999999999999999999999999999877665555554433333479999
Q ss_pred HHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHH
Q 016428 144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (390)
Q Consensus 144 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~ 223 (390)
++++|+++|++.+.. +.....++|++|+++|++++++...+..+|..+++++++.+.+..| ||+.|++.++++++..+
T Consensus 82 l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 82 LLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHH
Confidence 999999999999864 5555667999999999999999999999999999999999998888 99999997776666544
Q ss_pred -HhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHh
Q 016428 224 -AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL 302 (390)
Q Consensus 224 -~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (390)
..+++||+|++.. +..+.+ +...+++++++++.+|...+..++.....+
T Consensus 160 ~~~~~lp~~p~~~~---~~~~~~---------------------------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 209 (368)
T TIGR00903 160 LVLAALPALPFQAA---EGFGFK---------------------------DAVKEFGALAGRKDLWIIGAILGFGVALFD 209 (368)
T ss_pred HHHHHcCCCCCCCC---CCcchH---------------------------HHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 4456898875321 000000 000135678899999999888888888887
Q ss_pred hchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 016428 303 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR 350 (390)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 350 (390)
...+++|.|+.+ .+.+ .+.+.......+.+ .+..++++||..|
T Consensus 210 ~~~~wlp~~L~~-~g~s-~~~~~~~~l~~~~g---~~g~~~~~d~~~r 252 (368)
T TIGR00903 210 NLAIWLEAALRP-AGLE-DIAGDAVALAILAG---LIGVAVIPDRVAR 252 (368)
T ss_pred HHHHHHHHHHHH-CCCC-hHHHHHHHHHHHHH---HHHHHHhhHHhhh
Confidence 777788888754 3322 22333333334444 4445777787654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=237.35 Aligned_cols=313 Identities=18% Similarity=0.201 Sum_probs=236.1
Q ss_pred HHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHH
Q 016428 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (390)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~ 131 (390)
.+.+++++.++..++...+++.+|.+.+++|.+..+. +++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3456667778888888888899999999999987776 89999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHH
Q 016428 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (390)
Q Consensus 132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f 211 (390)
.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++......+|..++|.+++.+.+..+ ||+.|
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f 167 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF 167 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888 99999
Q ss_pred HHHHHHHHHHHHHhh-cccCChhhHHhcCCHHHHHHHHH--------H-HhCCCC---chhHHH-----------Hhhhc
Q 016428 212 WVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFE--------K-LLGGSH---VKSSLA-----------ELSKL 267 (390)
Q Consensus 212 ~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~--------~-~~~~~~---~~~~~~-----------~~~~~ 267 (390)
.+......+..+... ..|+++. ++.+.+....... . ..+... ...... ....+
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (471)
T PRK10504 168 LINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH 244 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 987766665554443 3444332 1111111110000 0 000000 000000 00001
Q ss_pred ccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 016428 268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK 347 (390)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 347 (390)
++..+++.. ..++++||.++......++............++|.+...+.+....+....+..++.+++.++.+++.||
T Consensus 245 ~~~~~~~~~-~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r 323 (471)
T PRK10504 245 ARNNNRALF-SLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR 323 (471)
T ss_pred HhcCCCCcc-CHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222 2358899999888877777776665555677888777666666667777888888888888999999999
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHh
Q 016428 348 LGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
+|+|+.+..+..+.++...++.+.
T Consensus 324 ~g~~~~~~~~~~~~~~~~~~~~~~ 347 (471)
T PRK10504 324 FGYRRVLVATTLGLALVSLLFMLV 347 (471)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhc
Confidence 999999988888787776666554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=226.41 Aligned_cols=268 Identities=16% Similarity=0.138 Sum_probs=210.0
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~ 132 (390)
...+.+..+..........+.+|.+.+++|.+.++. ++..+++.+++.+++++.|+++||+|||++++.+.++++++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 95 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLAC 95 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHH
Confidence 334455556667788889999999999999987776 899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHH
Q 016428 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (390)
Q Consensus 133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~ 212 (390)
+++++++|++.++++|+++|++.+...+....++.|++|+++|++++++......+|..+||.+++.+.+..+ ||+.|+
T Consensus 96 ~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~ 174 (413)
T PRK15403 96 AATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFA 174 (413)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHH
Confidence 9999999999999999999999887777777889999999999999999999999999999999999888777 999999
Q ss_pred HHHHHHHHHHHH-hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHH
Q 016428 213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (390)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (390)
+.++..++..+. .+.+||+++. ++++.+. +....++++++++|.++...
T Consensus 175 ~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~~---------------------------~~~~~~~~~ll~~~~~~~~~ 224 (413)
T PRK15403 175 IIAVMGLIAFVGLLLAMPETVKR---GAVPFSA---------------------------KSVLRDFRNVFRNRLFLTGA 224 (413)
T ss_pred HHHHHHHHHHHHHHHhCCCCccc---cCCCCCh---------------------------HHHHHHHHHHHcCHHHHHHH
Confidence 988777766554 3457876431 0000000 00112356778889888877
Q ss_pred HHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHH
Q 016428 292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL 353 (390)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 353 (390)
+...+.....+......|.++.+.++.+..+.++.......+.+++..+.+.+.++..+++.
T Consensus 225 l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 225 ATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 77666666655555666777776656555556666666777878888887777655444343
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=229.49 Aligned_cols=287 Identities=19% Similarity=0.123 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHH
Q 016428 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII 130 (390)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i 130 (390)
..+....+..+..+. ....++..|.+.+++|++.++. |++.+++.+++.+++++.|+++||+|||+++..+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~ 80 (377)
T TIGR00890 4 YVLVGTVIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL 80 (377)
T ss_pred EEeHHHHHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence 333344444444433 4457888999999999987776 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHH
Q 016428 131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (390)
Q Consensus 131 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~ 210 (390)
+.+++++++|++.++++|+++|++.+...+.....+.|++| ++|+++.++...+..+|..+++++.+.+.+..+ ||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~ 158 (377)
T TIGR00890 81 GFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHH
Confidence 99999999999999999999999999888888888899986 579999999999999998776666666666667 9999
Q ss_pred HHHHHHHHHHHHHHhh-cccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhH
Q 016428 211 FWVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 289 (390)
Q Consensus 211 f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
|++.++..++..+..+ +.+|+|+. +.+++ ++.+.+..+.++.++++.++.
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~ 209 (377)
T TIGR00890 159 FIYMGIIFLLVIVLGAFLIGYPPGQ---LIKTN--------------------------IEVSVKDYTVWEMLRTPQFWV 209 (377)
T ss_pred HHHHHHHHHHHHHHHHHheecCchh---ccccC--------------------------cccchhhhhHHHHHcCccHHH
Confidence 9998877777655544 34443321 00000 000011123456777787776
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 016428 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369 (390)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 369 (390)
.....++............+.|.++ ++.+..+.+.......++.++++++.+++.||++||+.+.++..+..++.+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 288 (377)
T TIGR00890 210 LYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML 288 (377)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 6655554444333323333333322 232222345577788889999999999999999999998888888888777665
Q ss_pred Hhc
Q 016428 370 AAS 372 (390)
Q Consensus 370 ~~~ 372 (390)
..+
T Consensus 289 ~~~ 291 (377)
T TIGR00890 289 FIP 291 (377)
T ss_pred Hcc
Confidence 544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=229.53 Aligned_cols=279 Identities=17% Similarity=0.138 Sum_probs=220.0
Q ss_pred HHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh
Q 016428 60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR 139 (390)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~ 139 (390)
++...++...++...|.+.+++|.+..+. |++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 34556777788888999999999988777 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHH
Q 016428 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219 (390)
Q Consensus 140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~ 219 (390)
|++.++++|+++|++.+...+....++.|++|+++|++++++......+|..+++.+++.+.+..+ ||+.|++.++..+
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 159 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGI 159 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888888 9999998877766
Q ss_pred HHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHH
Q 016428 220 ILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA 298 (390)
Q Consensus 220 ~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (390)
+..+.. ++.||+|+... ..++++.....+... ...+.++.++....+.++.+++++++...+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (399)
T TIGR00893 160 IWGVLWLKFIPDPPQKAK-WLTEEEKYIVVGGLL----------AEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVN 228 (399)
T ss_pred HHHHHhhheecCCCCccc-cCCHHHHhhcchhhc----------cccccccccCCCccchHHHhcCHHHHHHHHHHHHHH
Confidence 655544 44566543110 001111100000000 000011122233445677888888888887777777
Q ss_pred HHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChH
Q 016428 299 LQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKA 352 (390)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 352 (390)
........+.+.|..+..+.+..+.+.......++.+++.++.+++.||++||+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 229 IGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred hHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 777776777787877766666566777888889999999999999999999885
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=226.99 Aligned_cols=290 Identities=13% Similarity=0.115 Sum_probs=216.2
Q ss_pred hHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHH
Q 016428 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (390)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~ 129 (390)
...+..+.+..+..++.....++..|.+++++|+++++. |++.+.+.+++.+++++.|+++||+|||+++..+..+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 445556666677778888888899999999999988777 999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc-c--
Q 016428 130 IGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-I-- 203 (390)
Q Consensus 130 i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~-- 203 (390)
++.+++ +++++++.++++|+++|+|.|...+....++.|+.|+++|.+.+++.+..+.+|..+++.+++.+.. .
T Consensus 103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~ 182 (438)
T PRK10133 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999875 5689999999999999999999999999999998877777778999999999999999988765430 0
Q ss_pred ---------------Cc-------hhHHHHHHHH-HHHHHHHHH-hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchh
Q 016428 204 ---------------AG-------WWRICFWVSI-VPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKS 259 (390)
Q Consensus 204 ---------------~g-------~wr~~f~~~~-~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (390)
.+ .||++|+... +..++..+. ...+||.+. + +.++
T Consensus 183 ~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-~~~~---------------- 241 (438)
T PRK10133 183 HQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-NHSD---------------- 241 (438)
T ss_pred ccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-cccc----------------
Confidence 11 1666665433 333332222 222444221 0 0000
Q ss_pred HHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhH-HHHHhhcCCCchHHHHHHHHHHHHHH
Q 016428 260 SLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS-SSVFKSAGLSSGLANVFVGIANLLGS 338 (390)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (390)
++..+...+.++++++|.++...+..++..........+.+.|+ ++.++.+....+.......++.++++
T Consensus 242 ---------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~ 312 (438)
T PRK10133 242 ---------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR 312 (438)
T ss_pred ---------ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00001122345778888888777666666666665566666664 34455555567778889999999999
Q ss_pred HHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHh
Q 016428 339 VVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 339 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
++.+++.||+++|+.+..+..+..+++++..+.
T Consensus 313 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 345 (438)
T PRK10133 313 FTGTWLISRFAPHKVLAAYALIAMALCLISAFA 345 (438)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999888777766665554443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=225.29 Aligned_cols=286 Identities=22% Similarity=0.353 Sum_probs=219.3
Q ss_pred HHHHHhhhhcccccccchh-hhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHH
Q 016428 57 TLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS 135 (390)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~ 135 (390)
+++.++..++.....+.+| .+.+++|.+.++. +++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 4556777777777888888 8999999988887 999999999999999999999999999999999999999997777
Q ss_pred HhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHH
Q 016428 136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215 (390)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~ 215 (390)
.+++|++.++++|+++|++.+...+....++.|++|+++|++++++......+|..++|.+++.+.+..+ ||+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~ 158 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISA 158 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-ccccccccc
Confidence 7778888999999999999999999999999999999999999999999999999999999999998888 999999988
Q ss_pred HHHHHHHHH-hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccc-hhhhhhcccchhHHHHH
Q 016428 216 VPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV-KFEELLYGRHFRVVFIG 293 (390)
Q Consensus 216 ~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 293 (390)
+..++..++ ..+++++|+....+.+.++. ++++++.. .++.+.+++.+|.....
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPRERESPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILLIA 214 (352)
T ss_dssp HHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred chhhhhhhhHhhhhhhcccccccccccccc------------------------cccccccccccccccccchhhhhhhh
Confidence 888877664 24455443211111111000 00011112 25667777777755555
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHhhc-CCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 016428 294 STLFALQQLSGINAIFYFSSSVFKSA-GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 369 (390)
.++..+.......+.+.|+.+.++.+ ..+.+.......+..+++.++.+++.||+++|+..........+....+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (352)
T PF07690_consen 215 FFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL 291 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 55555555555667777766666766 34556678888888999999999999999988777666666665555444
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=228.86 Aligned_cols=311 Identities=20% Similarity=0.271 Sum_probs=214.3
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
+++|+.+..+.+..+..+++.....+..|.+.+++|.+..+. +++.+.+.++..++.++.|+++||+|||+++..+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 344666666777777888888888889999999999987766 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch
Q 016428 127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~ 206 (390)
+.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g- 169 (398)
T TIGR00895 91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG- 169 (398)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHHH-HHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhccc
Q 016428 207 WRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR 285 (390)
Q Consensus 207 wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (390)
||+.|++.++..++. .+...++||++++..++ +.++..+..++.......... .+..+.++.++......+.+++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 247 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGK 247 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-ccccccccccchhhHHHHHHhcch
Confidence 999998875444443 44456688887654443 222222222222111000000 000000000011111122233333
Q ss_pred chhHH---HHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 016428 286 HFRVV---FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 362 (390)
Q Consensus 286 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 362 (390)
..+.. ....++..........+.|.+. ...+.+..+.+.......++.+++.++.+++.||+++|+... +..+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 325 (398)
T TIGR00895 248 TARITVLLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGA 325 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHH
Confidence 32222 2222222222222223333222 223333344566777888999999999999999999984443 333333
Q ss_pred HH
Q 016428 363 VS 364 (390)
Q Consensus 363 ~~ 364 (390)
+.
T Consensus 326 ~~ 327 (398)
T TIGR00895 326 VF 327 (398)
T ss_pred HH
Confidence 33
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-29 Score=223.02 Aligned_cols=292 Identities=17% Similarity=0.149 Sum_probs=214.7
Q ss_pred HHHHHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~ 133 (390)
..+++.+..........+..|. +.+++|++..+. +++.+++.+++.+++++.|+++||+|||++++.+.++..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 4556666667777778899995 999999988877 9999999999999999999999999999999999999999999
Q ss_pred HHHhhh-hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc----------
Q 016428 134 ISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---------- 202 (390)
Q Consensus 134 ~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---------- 202 (390)
++++++ +++.+++.|+++|++.+. .+....+++|++|+++|+++.++......+|..+++.+++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999 999999999999998665 45677899999999999999999997777777777766655443
Q ss_pred cCchhHHHHH-HHHHHHHHH-HHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhh
Q 016428 203 IAGWWRICFW-VSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEE 280 (390)
Q Consensus 203 ~~g~wr~~f~-~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (390)
..+ ||+.|+ ..++...+. .+...+.+|+|+. +++++ +...+. . ....+++......+
T Consensus 162 ~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~---~------------~~~~~~~~~~~~~~ 220 (366)
T TIGR00886 162 HLA-WGWAFVIVPAGILLLPALLIFFVGADTPPG----KPATG-KLSFKG---A------------RWSVGTGALGDQLK 220 (366)
T ss_pred ccc-ccchhHHHHHHHHHHHHHHHHHhcccCCcc----cccch-hccccc---c------------cccccchhHHHHHH
Confidence 235 999994 434444333 3334455666531 11100 000000 0 00000111124566
Q ss_pred hhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 016428 281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360 (390)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 360 (390)
.+++++++...+..++..........+.+.|..+.++.+..+.+.......+..++++++.+++.||+|+|+....+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 300 (366)
T TIGR00886 221 VFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLG 300 (366)
T ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHH
Confidence 78888888777776666666666667778888776666666677777788889999999999999999998877777666
Q ss_pred HHHHHHHHHH
Q 016428 361 MAVSMAIQVA 370 (390)
Q Consensus 361 ~~~~~~~~~~ 370 (390)
...+..++..
T Consensus 301 ~~~~~~~~~~ 310 (366)
T TIGR00886 301 VAMGAFLVVL 310 (366)
T ss_pred HHHHHHHHHh
Confidence 6665555443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=226.67 Aligned_cols=302 Identities=18% Similarity=0.162 Sum_probs=235.3
Q ss_pred chhhhHHHHHHHHHHHhhhhcccc-cccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHh
Q 016428 46 WKLSFPHVLVATLSSFLFGYHLGV-VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC 124 (390)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~ 124 (390)
+|..+..+..++..++....+... ....+..+.+|.+...++. +++.+++.++++++.+++|.+.||++..+.+...
T Consensus 40 ~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~ 117 (495)
T KOG2533|consen 40 RKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVS 117 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHH
Confidence 344455566666666777776654 3334555778988877776 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc---
Q 016428 125 ALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK--- 201 (390)
Q Consensus 125 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~--- 201 (390)
.+++++..++....+|++.+++.|++.|+..+..+|....+++.|+.+++|++.++++.+..++|.++|.+++..+.
T Consensus 118 ~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~ 197 (495)
T KOG2533|consen 118 GILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN 197 (495)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999988863
Q ss_pred ---ccCchhHHHHHHHHHHHHHHHHHh-hcccCChhhH--HhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCcc
Q 016428 202 ---EIAGWWRICFWVSIVPAAILCLAM-VFCAESPHWL--YKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275 (390)
Q Consensus 202 ---~~~g~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (390)
...| |||.|++.++++++..+.. +++|+.|... ..+.+++-..+..++ .......++.+.
T Consensus 198 ~~~~~~g-W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~-------------~~~~~~~~~~~~ 263 (495)
T KOG2533|consen 198 GSGGLAG-WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRE-------------SPSGGIENKFKW 263 (495)
T ss_pred CCCCcCC-ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHh-------------ccCCCcccccCH
Confidence 3345 9999999888888776554 6699998621 111111000111110 001111122455
Q ss_pred chhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhh----hCCh
Q 016428 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK----LGRK 351 (390)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~ 351 (390)
..+++.++++..|...+..++......+..+++|.++.+..+.+..+++.+.++..++++++.+++|+++|| ..+|
T Consensus 264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~ 343 (495)
T KOG2533|consen 264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARR 343 (495)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHH
Confidence 678889999999999999999999988888899998887444667778889999999999999999999999 5556
Q ss_pred HHHHHHHHHHHH
Q 016428 352 ALLQWSFFSMAV 363 (390)
Q Consensus 352 ~~~~~~~~~~~~ 363 (390)
........+..+
T Consensus 344 ~~~~~~~~~~~~ 355 (495)
T KOG2533|consen 344 LLFIVFLCLYAI 355 (495)
T ss_pred HHHHHHHHHHHH
Confidence 555544444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=224.07 Aligned_cols=287 Identities=16% Similarity=0.123 Sum_probs=224.4
Q ss_pred HHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHH
Q 016428 56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS 135 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~ 135 (390)
+..+.++..+......+.+|.+..+++.+..+. |++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 345566666777777788898999988776666 999999999999999999999999999999999999999999888
Q ss_pred Hhhh-----hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHH
Q 016428 136 ATTR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (390)
Q Consensus 136 ~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~ 210 (390)
++.+ +++.++++|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~ 160 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWA 160 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHH
Confidence 8887 999999999999999999999999999999999999999999999999999999999999988887 9999
Q ss_pred HHHHHHHHHHHHHHhhcc--cCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchh
Q 016428 211 FWVSIVPAAILCLAMVFC--AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288 (390)
Q Consensus 211 f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (390)
|++.++..++..+..+.+ ||+++ +++++..++.. ++....+++++++|.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~ 213 (365)
T TIGR00900 161 IWVDAVGFAISALLIVSVRIPELAA----SEIQALSNAVL-----------------------RDTREGIKFVLKNPLLR 213 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCC----ccccccchhHH-----------------------HHHHhHHHHHHcCcHHH
Confidence 988777666554444333 33211 00000000000 00012345677788888
Q ss_pred HHHHHHHHHHHHHhhch-hhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 016428 289 VVFIGSTLFALQQLSGI-NAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (390)
Q Consensus 289 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 367 (390)
......++......... ...|.|.++.++.+..+.+.......++.+++.++.+++.||.+||+....+..+.+++++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (365)
T TIGR00900 214 TLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV 293 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 77776666665554444 66777777666666666777888889999999999999999999999888887777777666
Q ss_pred HHHhc
Q 016428 368 QVAAS 372 (390)
Q Consensus 368 ~~~~~ 372 (390)
+....
T Consensus 294 ~~~~~ 298 (365)
T TIGR00900 294 VGLTP 298 (365)
T ss_pred HHhhc
Confidence 65544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=229.87 Aligned_cols=289 Identities=13% Similarity=0.108 Sum_probs=207.3
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
+++|..+..+++.....+.++..++...|.+.++ |++.++. |++.+.+.+++.+++++.|+++||+|||++++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~ 101 (452)
T PRK11273 25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 101 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence 3445555556666666666766677788888888 9887776 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh----hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHH-HHHHHhccccc
Q 016428 127 PMIIGASISATTR----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVK 201 (390)
Q Consensus 127 ~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~l~ 201 (390)
+.+++.+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|. +.+++++..+.
T Consensus 102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999888763 788899999999999998888877889999999999999999999998886 45665543333
Q ss_pred ccCchhHHHHHHHHHHHHHHH-HHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccch-hh
Q 016428 202 EIAGWWRICFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK-FE 279 (390)
Q Consensus 202 ~~~g~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 279 (390)
...+ ||+.|++.+++.++.. +..+++||+|+....+. .++.++.. . . +.++.++++.+.... ..
T Consensus 182 ~~~g-w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~-------~--~---~~~~~~~~~~~~~~~~~~ 247 (452)
T PRK11273 182 WFND-WHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKNDY-------P--D---DYNEKHEQELTAKQIFMQ 247 (452)
T ss_pred Hhcc-HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhhcc-------c--c---ccccccCCCccHHHHHHH
Confidence 3345 9999998777666643 44466788765321111 11100000 0 0 000000000000111 12
Q ss_pred hhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh--CChH
Q 016428 280 ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKA 352 (390)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~ 352 (390)
.+++++.+|...+..++.....+....++|.|+.+..+.+....+.......++.+++.++.|+++||+ +||.
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 322 (452)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 366788888877777777666666667888888776555555566677788889999999999999998 4444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=227.44 Aligned_cols=319 Identities=17% Similarity=0.219 Sum_probs=218.7
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
+++|+.+..++++.+.+.++....++.+|.+.+++|.+.++. +++.+.+.+++.+++++.|+++||+|||++++.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 355677788888899999999999999999999999987776 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch
Q 016428 127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~ 206 (390)
+.+++.++.++++|++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|..+++.+++.+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~- 172 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG- 172 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHH-Hh-------hhcccCCCCccch-
Q 016428 207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA-EL-------SKLDRGDDGDIVK- 277 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~- 277 (390)
||+.|++..+..++.++....+||++++..++++.++..+..+.....+....... .. .............
T Consensus 173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (496)
T PRK03893 173 WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVA 252 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99999886555554444445577776543222111111111111100000000000 00 0000000000000
Q ss_pred ---------hhhh-h-cccchhHHHHHHHHHHHHHh----hchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH
Q 016428 278 ---------FEEL-L-YGRHFRVVFIGSTLFALQQL----SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAM 342 (390)
Q Consensus 278 ---------~~~~-~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 342 (390)
+... . .++..+..........+..+ ....++|.|+.+.++.+..+.+.......++.+++.++.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g 332 (496)
T PRK03893 253 VLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG 332 (496)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00001111111111111111 1223456665544444444567788888999999999999
Q ss_pred HHHhhhCChHHHHHHHHHHHHHHHHH
Q 016428 343 VLMDKLGRKALLQWSFFSMAVSMAIQ 368 (390)
Q Consensus 343 ~l~d~~g~~~~~~~~~~~~~~~~~~~ 368 (390)
++.||++||+.+..+..+..+..+++
T Consensus 333 ~l~dr~g~~~~~~~~~~~~~~~~~~~ 358 (496)
T PRK03893 333 FLGDWLGTRKAYVCSLLISQLLIIPV 358 (496)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 99999999998877766655554433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=219.66 Aligned_cols=284 Identities=17% Similarity=0.139 Sum_probs=214.5
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH
Q 016428 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~ 133 (390)
.+.....+..........+.+|.+.+++|.+.++. ++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 34444455555555666688999999999987776 8999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHH
Q 016428 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
++..+++++.+++.|+++|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++
T Consensus 84 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~ 162 (392)
T PRK10473 84 LCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYT 162 (392)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHH
Confidence 999999999999999999999999898999999999999999999999999999999999999988877777 9999998
Q ss_pred HHHHHHHHHHH-hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHH
Q 016428 214 SIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (390)
Q Consensus 214 ~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (390)
.++..++..+. .+++||+++. +++.+ .......++.++++.++....
T Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~---~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 210 (392)
T PRK10473 163 MAAMGILVLLLSLFILKETRPA---RAPAA-----------------------------SSKPRENSESLLNRFFLSRLV 210 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCCCc---ccCCc-----------------------------cchHHHHHHHHhCHHHHHHHH
Confidence 77766655444 3456665321 00000 000112234556666655444
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhc
Q 016428 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS 372 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
...+............+.+..+.++.+....+......+++.+++.++.+++.||+|+|+.+.++..+..++.+.+....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 211 ITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP 290 (392)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333333333444555444444433455677778889999999999999999999998888887777776665543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=214.33 Aligned_cols=274 Identities=19% Similarity=0.165 Sum_probs=204.8
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~ 132 (390)
+..+.++.++........++.+|.+.+++|.+.++. |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667788888899999999999999999987766 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHH
Q 016428 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (390)
Q Consensus 133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~ 212 (390)
+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++++..+..+|..+|+.+++.+.+... |...+
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~- 163 (381)
T PRK03633 86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW- 163 (381)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH-
Confidence 9999999999999999999999999888887888899999999999999999999999999999998877542 22222
Q ss_pred HHHHHHHHHH-HHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHH
Q 016428 213 VSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (390)
Q Consensus 213 ~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (390)
..+......+ +.....+|++ .+ + ++..+.++.++++.++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~------~~----------------------------~---~~~~~~~~~~~~~~~~~~~ 206 (381)
T PRK03633 164 VTGLVLAAILPLLFTRILNQQ------AE----------------------------N---HDSTSIWPMLKLRQARLGV 206 (381)
T ss_pred HHHHHHHHHHHHHHhcccCCC------CC----------------------------C---CCCCCHHHHHHhcchHHHH
Confidence 2222221111 1111112110 00 0 0112345567777777554
Q ss_pred HHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q 016428 292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368 (390)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 368 (390)
...+.........+.++|.|.++ .+.+....+.......++.+++++..+++.||+++|+.+..+..+..++...+
T Consensus 207 ~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 282 (381)
T PRK03633 207 NGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM 282 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 44444433333444556666654 23333335566777888999999999999999999998887777776665543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-29 Score=224.06 Aligned_cols=276 Identities=16% Similarity=0.107 Sum_probs=212.3
Q ss_pred HHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh
Q 016428 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT 138 (390)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~ 138 (390)
+++...++...++...|.+.+++|.+.++. |++.+++.++..+++++.|+++||+|||++++.+.++.+++.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 456667788888899999999999988877 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHH-HhcccccccCchhHHHHHHHHHH
Q 016428 139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL-LIGIPVKEIAGWWRICFWVSIVP 217 (390)
Q Consensus 139 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~~~~~l~~~~g~wr~~f~~~~~~ 217 (390)
++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++ .+++.+.+..+ ||+.|++.+++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGII 159 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 56666666667 99999887766
Q ss_pred HHHHHH-HhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHH
Q 016428 218 AAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296 (390)
Q Consensus 218 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (390)
.++..+ ..++.+|+|+....+..+++..+ ..+ .+.++.+++.+......+++++++.++...+..++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
T TIGR00881 160 AIIVSLICFLLLRDSPQSCGLPPAEEMPNE---------EPD---GDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVF 227 (379)
T ss_pred HHHHHHHHheeeCCCccccccCccccCccc---------ccc---cccccccccccchHHHHHHHHhcchHHHHHHHHHH
Confidence 655444 44556766542110000000000 000 00000001111222345667888888887777777
Q ss_pred HHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhC
Q 016428 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG 349 (390)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 349 (390)
..........+.+.|..+..+.+..+.+.......++.+++.++.+++.||..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 228 VYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 77666666677777777666666666777888889999999999999999864
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=220.23 Aligned_cols=281 Identities=19% Similarity=0.208 Sum_probs=229.6
Q ss_pred hhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhc
Q 016428 78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGM 155 (390)
Q Consensus 78 ~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~ 155 (390)
..+++++.++. |++.+.++.|+.+++++.|++.||+|.|+++..+.++.++++++...+. +++.+++.|++||++.
T Consensus 65 ~~~~~ws~~~k--~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~ 142 (466)
T KOG2532|consen 65 AGEYDWSSTEK--GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ 142 (466)
T ss_pred CceecCCHHHH--HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence 34677766665 9999999999999999999999999999999999999999999998875 4567789999999999
Q ss_pred cchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc-CchhHHHHHHHHHHHHHHHHHhh-cccCChh
Q 016428 156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPAAILCLAMV-FCAESPH 233 (390)
Q Consensus 156 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-~g~wr~~f~~~~~~~~~~~~~~~-~~~e~p~ 233 (390)
|..+|+...+.++|.|++||++..++...+..+|.+++.+++|.+.+. .| |+++|++.++.+++..++++ +..|+|.
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999988 77 99999999999888877664 4566664
Q ss_pred hHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHH
Q 016428 234 WLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS 313 (390)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (390)
. ++.-.+++.+.+++ .+..+..++....+++++++++.+|..++..+...........+.|.|+.
T Consensus 222 ~--h~~is~~El~~I~~-------------~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~ 286 (466)
T KOG2532|consen 222 K--HPNISEKELKYIEK-------------GKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK 286 (466)
T ss_pred c--CCCCCHHHHHHHHh-------------cccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2 11112222222111 01111112225788999999999999999999999999999999999999
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCC---------hHHHHHHHHHHHHHHHHHHHhcccCC
Q 016428 314 SVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR---------KALLQWSFFSMAVSMAIQVAASSSYI 376 (390)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (390)
++++.+-.+.|....+..+...+..+++|.++||..+ |..-.++....+++++.+.+......
T Consensus 287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~ 358 (466)
T KOG2532|consen 287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHR 358 (466)
T ss_pred HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcc
Confidence 9999999999999999999999999999999998754 22334566666666666666654433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=216.60 Aligned_cols=269 Identities=19% Similarity=0.196 Sum_probs=204.8
Q ss_pred HHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh
Q 016428 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT 138 (390)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~ 138 (390)
...+..+....+.|.+|.+.+++|.++++. +++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 344455666777888999999999987776 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHH
Q 016428 139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA 218 (390)
Q Consensus 139 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~ 218 (390)
++++.+++.|+++|++.+...+....++.|++|++++++..+.......+|..++|.+++.+.+..+ ||+.|++.++..
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~ 170 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAIT 170 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Confidence 9999999999999999888888888899999999999999999988899999999999999988888 999999887777
Q ss_pred HHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHH
Q 016428 219 AILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA 298 (390)
Q Consensus 219 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (390)
++..+..++++|+++ +++.+ ++..+++++++++.++...+...+..
T Consensus 171 ~~~~~~~~~~~~~~~----~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (401)
T PRK11043 171 LLLILPTLRLKPSKK----ARKQS------------------------------QDALTFKQLLKSKTYLGNVLIFAACS 216 (401)
T ss_pred HHHHHHHHHcCCCCC----ccccc------------------------------hHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 766665555555432 00000 01123456677777665544444433
Q ss_pred HHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH
Q 016428 299 LQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM 365 (390)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 365 (390)
...+....+.|.+..+ .+.+..+.+.......++.+++.++.+++.||+++|+.........+++.
T Consensus 217 ~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~ 282 (401)
T PRK11043 217 AAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSV 282 (401)
T ss_pred HHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 3333334455555543 33333334555666677888999999999999998887655554444443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=222.27 Aligned_cols=288 Identities=21% Similarity=0.188 Sum_probs=221.8
Q ss_pred hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccch
Q 016428 79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG 158 (390)
Q Consensus 79 ~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 158 (390)
+.+..+... ..+..+++++|..+|++++|+++||+|||++++.++++..++.+++++++|++.+++.|+++|++.++.
T Consensus 111 ~~~c~~~~~--~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 111 NLVCDSSTL--VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred ceeeCcHhH--HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccch
Confidence 344433333 378999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhc
Q 016428 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238 (390)
Q Consensus 159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 238 (390)
......+++|++++++|+.+..+ ......+..+++..++++.+ + ||+.+++..++.++.++..++.||+|+|+..+
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--D-WRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--h-HHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 99999999999999999999999 77777777777777777776 4 99999999999988877767777999999999
Q ss_pred CCHHHHHHHHHHHhCCC----CchhHHHHh---hhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHh
Q 016428 239 GRTAEAEAEFEKLLGGS----HVKSSLAEL---SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF 311 (390)
Q Consensus 239 ~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
++.+++.+.+++....+ ......... +.......++...+.++++.++++...+...+.++.....++.++..
T Consensus 265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~ 344 (521)
T KOG0255|consen 265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLN 344 (521)
T ss_pred CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhh
Confidence 99999999888876533 111111111 11111122233557888888766655555555443322222333222
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhcccCC
Q 016428 312 SSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI 376 (390)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (390)
. ...+.+........+.....+....+...|+.|||.....+..+..++++...+......
T Consensus 345 ~----~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (521)
T KOG0255|consen 345 V----SGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG 405 (521)
T ss_pred h----hhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 2 223445555666677788888888899999999999999999999999988887765543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-28 Score=200.83 Aligned_cols=324 Identities=19% Similarity=0.214 Sum_probs=248.8
Q ss_pred CchhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHh
Q 016428 45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC 124 (390)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~ 124 (390)
..+.+|.......++...+.+.....+-+.|...+.+|++..+. +++....+.|..+++..+|..+|++|||+.+...
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T 149 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLT 149 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhh
Confidence 45677888888888888888877777778888899999766665 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC
Q 016428 125 ALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204 (390)
Q Consensus 125 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 204 (390)
....++...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|.-|..+|...+-.. ..+.+|.+....+...+..+.
T Consensus 150 ~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~ 227 (528)
T KOG0253|consen 150 FLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF 227 (528)
T ss_pred HHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 788888999999999999887777 899999999999998888888
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHH--------Hhh----hc----c
Q 016428 205 GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA--------ELS----KL----D 268 (390)
Q Consensus 205 g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----~~----~ 268 (390)
| |||.......+..+.+...+++||+||+...+++.+++...++++.+.|..+-... +.+ +. .
T Consensus 228 g-wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~ 306 (528)
T KOG0253|consen 228 G-WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS 306 (528)
T ss_pred h-HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh
Confidence 8 99999988888888888889999999999999999999999988876654221110 000 00 0
Q ss_pred cCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcC--------------------CC---chH
Q 016428 269 RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG--------------------LS---SGL 325 (390)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~---~~~ 325 (390)
...++...+..+++. +++++..+.....++.+...++.......+.++... .+ ...
T Consensus 307 ~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYr 385 (528)
T KOG0253|consen 307 SAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYR 385 (528)
T ss_pred ccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHH
Confidence 111233444555665 334333333333333322223333333333322111 11 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhccc
Q 016428 326 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS 374 (390)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
-.....+..++|.++.++++||+|||+.+...++++++..+++......
T Consensus 386 dllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r 434 (528)
T KOG0253|consen 386 DLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR 434 (528)
T ss_pred HHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 4567788999999999999999999999999999999998887766544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=215.54 Aligned_cols=266 Identities=15% Similarity=0.199 Sum_probs=208.4
Q ss_pred cccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 016428 66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML 145 (390)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~ 145 (390)
...+..|.+|.+.+++|.++++. +++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.+.++++++.++
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI 83 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 44556789999999999988777 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHH-
Q 016428 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA- 224 (390)
Q Consensus 146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~- 224 (390)
+.|+++|++.+...+....++.|++|+++|++++++.+....+|..++|.+++.+.+..+ ||+.|++.++..++..+.
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988777 999999877776665444
Q ss_pred hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhc
Q 016428 225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSG 304 (390)
Q Consensus 225 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (390)
.++.||+++. +++.+. +.++...+.+++++++..+...+...+........
T Consensus 163 ~~~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (377)
T PRK11102 163 FFFIPETLPK---ERRQPF--------------------------HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSF 213 (377)
T ss_pred HHhCCccCcc---cccCCC--------------------------ChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 3556765321 000000 00001123455677777766555554444444443
Q ss_pred hhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 016428 305 INAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 363 (390)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 363 (390)
....+.+..+.++.+..+.+.......++.+++.++.+++.||+|+|+.+..+..+..+
T Consensus 214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFI 272 (377)
T ss_pred HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 44445555555555555567788888899999999999999999999988877765444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=213.64 Aligned_cols=283 Identities=15% Similarity=0.146 Sum_probs=216.3
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~ 132 (390)
+..++...+..++.....++.+|.+++++|++..+. |++.+.+.+++.+++++.|++.||+|||++++.+.++++++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 456666777778888888999999999999988776 999999999999999999999999999999999999999998
Q ss_pred HHHHh---hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc------
Q 016428 133 SISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI------ 203 (390)
Q Consensus 133 ~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~------ 203 (390)
+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.+++.+...
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 88654 468999999999999999999999999999999999999999999999999999999998766422
Q ss_pred --------------------CchhHHHHHHHHHHHHHHHHHhhc--ccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHH
Q 016428 204 --------------------AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261 (390)
Q Consensus 204 --------------------~g~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (390)
.+ ||+.|++.+++.++..+...+ .||.++ + ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~--~~------------------ 216 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLAS-VQTPYMIIGAVVLAVALLIMLTKMPALNH-----S--DA------------------ 216 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c--cc------------------
Confidence 23 999998877766655444333 333210 0 00
Q ss_pred HHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCc---hHHHHHHHHHHHHHH
Q 016428 262 AELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGS 338 (390)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 338 (390)
++.+...+.++++++|+++...+..+++.....+..++++.|..+.. .+.+. +...........+|+
T Consensus 217 --------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~--~~~~~~~a~~~~~~~~~~~~vGR 286 (410)
T TIGR00885 217 --------KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLI--PGMTAGFAANYNIGAMVIFFISR 286 (410)
T ss_pred --------ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 00001113446778888888777777777776655555555554311 12222 223444557778999
Q ss_pred HHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhcc
Q 016428 339 VVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS 373 (390)
Q Consensus 339 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 373 (390)
++++++.||+++|+.+.+...+..+.+++....+.
T Consensus 287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~ 321 (410)
T TIGR00885 287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG 321 (410)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999888888877777776665443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=218.38 Aligned_cols=273 Identities=13% Similarity=0.060 Sum_probs=205.0
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI 134 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~ 134 (390)
.++++.++..++........+.+.++++.+..+. +++.+.+.+++.++++++|+++||+|||++++.+.++.+++++.
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 3455666666655545555666788888776655 99999999999999999999999999999999999999999888
Q ss_pred HHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHH
Q 016428 135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214 (390)
Q Consensus 135 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~ 214 (390)
++++++. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|..+||.+++.+.+.. |+..+.+.
T Consensus 85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~--~~~~~~i~ 159 (393)
T PRK11195 85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH--AEAALAVC 159 (393)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 8777664 788999999999999999999999999999999999999999999999999999998853 77777666
Q ss_pred HHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHH
Q 016428 215 IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS 294 (390)
Q Consensus 215 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (390)
+...++..+..+.+||+|+.. ++++++..+..+. . ...++.++++|.++......
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~-------------~----------~~~~~~l~~~~~~~~~~~~~ 214 (393)
T PRK11195 160 ALIYLLAALFNLFIPRLGARR--PGQSWNPIALLRD-------------F----------FHACRVLWRDKLGRFSLAGT 214 (393)
T ss_pred HHHHHHHHHHHhcCCCCcccc--cccCCCHHHHHHH-------------H----------HHHHHHHHhCchhHHHHHHH
Confidence 555444445556678765321 1111110000000 0 01134567777776655554
Q ss_pred HHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHH
Q 016428 295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 359 (390)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 359 (390)
.+............+.|.++.++.+..+.+......+++.+++.++.+++.||.++++....+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~ 279 (393)
T PRK11195 215 TLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL 279 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH
Confidence 44444444445566677788777777778888999999999999999999999988877766643
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-33 Score=258.21 Aligned_cols=314 Identities=34% Similarity=0.602 Sum_probs=242.2
Q ss_pred HHHHHHhhhhcccccccchhhhh--hccccCCc-------chhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 56 ATLSSFLFGYHLGVVNEPLESIS--LDLGFNGN-------TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
..++.+..+++....+...+... .++..+.+ +...+++.+...+|..+|+++.|+++||+|||+.++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 34455777777777666654444 22222221 2234789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh---hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc
Q 016428 127 PMIIGASISATTR---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (390)
Q Consensus 127 ~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 203 (390)
+..++.++.++++ |++.++++|+++|++.|...+....++.|..|+++|++..++.+.++.+|.+++..++..+...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999988887665332
Q ss_pred Cc--hhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhh
Q 016428 204 AG--WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL 281 (390)
Q Consensus 204 ~g--~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (390)
.+ .||+.+.+.++++++..+..+++||+|+|+..++|.+++++.+++..+.+..+++.++..+..++.++...+++++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 244 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDL 244 (451)
T ss_pred cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeec
Confidence 21 3999999999998888777888999999999999999999888886655444444433333333332233667788
Q ss_pred hcccc-hhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHH
Q 016428 282 LYGRH-FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 359 (390)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 359 (390)
++++. .+.......+.............+|.+...+..+.+.. .......+...++.+++.++.||+|||+.++.+..
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~ 324 (451)
T PF00083_consen 245 FRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLL 324 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88765 34455555555555555555666677776666665555 44556667777888888899999999999999888
Q ss_pred HHHHHHHHHH
Q 016428 360 SMAVSMAIQV 369 (390)
Q Consensus 360 ~~~~~~~~~~ 369 (390)
+++++++.+.
T Consensus 325 ~~~~~~~~~~ 334 (451)
T PF00083_consen 325 LMAICSLILG 334 (451)
T ss_pred cccccccccc
Confidence 8888777664
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=217.33 Aligned_cols=276 Identities=18% Similarity=0.172 Sum_probs=199.1
Q ss_pred HHHHHHHHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHH
Q 016428 52 HVLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII 130 (390)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i 130 (390)
.+..+.+..++..++..+..+.+|. +.+++|.+..+. |++.+++.+++.+++++.|+++||+|||++++.+.++.++
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL 93 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence 3555667777777888888888886 578899887776 9999999999999999999999999999999999999888
Q ss_pred HHHHHHhh--------hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 016428 131 GASISATT--------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 131 ~~~~~~~~--------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 202 (390)
+.+.+.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~ 173 (399)
T PRK05122 94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH 173 (399)
T ss_pred HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 77766543 2577889999999999999999998999999999999999999999999999999999999988
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhh
Q 016428 203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL 282 (390)
Q Consensus 203 ~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (390)
..+ ||+.+++.++..++..+.....|++++ +++ + ..++++.+
T Consensus 174 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~-------------------------------~~~~~~~~ 215 (399)
T PRK05122 174 WGG-LAGLGLLIMLLALLGLLLARPRPAVPP----VKG--E-------------------------------RLPFRRVL 215 (399)
T ss_pred ccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC----CCc--c-------------------------------chhHHHHH
Confidence 888 999988766655444333322333211 000 0 00111112
Q ss_pred cccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 016428 283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 362 (390)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 362 (390)
+ +.+.......+..........+.+.|..+. +. .+.+.......++.+++.++.+++.||+++|+.+..+..+..
T Consensus 216 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 290 (399)
T PRK05122 216 G--RVWPYGMGLALASIGFGTIATFITLYYAAR-GW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEI 290 (399)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 111111112222222222233444444321 21 234556667788889999999999999999998888888777
Q ss_pred HHHHHHHHhc
Q 016428 363 VSMAIQVAAS 372 (390)
Q Consensus 363 ~~~~~~~~~~ 372 (390)
++..++...+
T Consensus 291 ~~~~~~~~~~ 300 (399)
T PRK05122 291 LGLLLLWLAP 300 (399)
T ss_pred HHHHHHHHhc
Confidence 7776665543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=230.33 Aligned_cols=305 Identities=16% Similarity=0.148 Sum_probs=227.3
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH
Q 016428 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~ 133 (390)
+.+++..+.........+..++.+.++|+++..+. |++.+.+.++++++.++.+++.||+|||+.+.++.++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence 44444666667777888999999999999998887 9999999999999999999999999999999999999999999
Q ss_pred HHHhhh---------------------------------------------------hHHHHHHHHHHHhhhccchhhhH
Q 016428 134 ISATTR---------------------------------------------------NLIGMLLGRFVVGTGMGLGPTVA 162 (390)
Q Consensus 134 ~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~ 162 (390)
++++.+ .+..++++|+++|+|.+..++..
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~ 193 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG 193 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence 988763 24567789999999999999999
Q ss_pred HHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC---------------------chhHHHHHHHHHHHHHH
Q 016428 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------------------GWWRICFWVSIVPAAIL 221 (390)
Q Consensus 163 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~---------------------g~wr~~f~~~~~~~~~~ 221 (390)
.+++.|++|+++|+++++++..+..+|..+|+++++.+.+.. |.|+..|++.+++.++.
T Consensus 194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~ 273 (633)
T TIGR00805 194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT 273 (633)
T ss_pred chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877532 12677788877777776
Q ss_pred HHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHH
Q 016428 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQ 301 (390)
Q Consensus 222 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (390)
.+.++++|++.+....+.+.++.++. .. ..... ... .......++.....++++++|.++...+..++.....
T Consensus 274 ~v~l~~~p~~lp~~~~~~~~~~~~~~--~~-~~~~~-~~~---~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~ 346 (633)
T TIGR00805 274 SIPFFFFPKALPKEGKRVNVDVHETE--KL-EKSED-KSR---KKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAF 346 (633)
T ss_pred HHHHHhCccccCCcccccchhhhhhh--cc-ccccc-ccc---hhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 66666677652210000000000000 00 00000 000 0000000111234678999999999999888888888
Q ss_pred hhchhhHHHhHHHHHhhcCCCchHHHHHHHH-HHHHHHHHHHHHHhhhCC--hHHHHHHHHHHHHHHHH
Q 016428 302 LSGINAIFYFSSSVFKSAGLSSGLANVFVGI-ANLLGSVVAMVLMDKLGR--KALLQWSFFSMAVSMAI 367 (390)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~ 367 (390)
.....++|.|++..++.+..+++.......+ +.+++.+++|+++||++. |+.+.++.++..++.++
T Consensus 347 ~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 347 NGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 8888899999988888777777776666655 568999999999999984 56666666666665443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=218.43 Aligned_cols=287 Identities=13% Similarity=0.057 Sum_probs=208.7
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
++..+....+.....+.....+....|.+.+ +|.+.++. +++.+++.++..+++++.|+++||+|||++++.+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 4555666666677777777777777787775 58887776 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc-c
Q 016428 129 IIGASISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-I 203 (390)
Q Consensus 129 ~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~ 203 (390)
+++.++.++. +++..+.+.|++.|++.|...+....++.|++|+++|++++++.+.+..+|..+++.+.+.... .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 9998887764 4677888999999999999888888999999999999999999999999999888877665443 4
Q ss_pred CchhHHHHHHHHHHHHHHH-HHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhh
Q 016428 204 AGWWRICFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL 282 (390)
Q Consensus 204 ~g~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (390)
.+ ||+.|++.++..++.. +..+++||+|+....+..++. + .+.. ... .++.+.+.+.+....+.++
T Consensus 182 ~~-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 248 (438)
T TIGR00712 182 ND-WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY-R-------NDYP-DDY---NEKAEQELTAKEIFMQYVL 248 (438)
T ss_pred hh-hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc-c-------cccc-ccc---ccccccccchHHHHHHHHc
Confidence 45 9999999877766654 444567887653110000000 0 0000 000 0000000000011123467
Q ss_pred cccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCh
Q 016428 283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK 351 (390)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 351 (390)
+++.++...+..++.....+....+.|.|+.+..+.+....+.......+.++++.++.|++.||++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 249 PNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 888888877766666666566667778888776666666677788888899999999999999999643
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=203.89 Aligned_cols=288 Identities=15% Similarity=0.095 Sum_probs=240.2
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
+++.+.+..+......+.....+++.+.+.+|+|+|++|. +++.++..+...+..++.|.+.||+|.|++..++.++.
T Consensus 12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 3445556666666666777788888899999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh---HHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc
Q 016428 129 IIGASISATTRN---LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (390)
Q Consensus 129 ~i~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g 205 (390)
.+-.+..+++.+ ++++++.+++.|++.+. +.....++++|+|+|++|.++|+.. ..++|..+..+++..+....+
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g 167 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG 167 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence 999999998854 45999999999997665 5677789999999999999999999 888898888888888887776
Q ss_pred h--hHHHHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhh
Q 016428 206 W--WRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL 282 (390)
Q Consensus 206 ~--wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (390)
. ||..-.+..+..++..+.. +...|.|+.....+ +..+...+.++
T Consensus 168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~--------------------------------~~~~~~~~~v~ 215 (417)
T COG2223 168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK--------------------------------PQLPAQLKAVF 215 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc--------------------------------ccchhHHHHHh
Confidence 3 8998888777777755544 44555543100000 00013456688
Q ss_pred cccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 016428 283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 362 (390)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 362 (390)
++++.|...+.++..+........+++.|+.+.++.+..+++.......+.+.+.++++|+++||+|.++.+.+.+..++
T Consensus 216 ~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 216 SNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMA 295 (417)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHH
Confidence 89999999999999999999989999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhc
Q 016428 363 VSMAIQVAAS 372 (390)
Q Consensus 363 ~~~~~~~~~~ 372 (390)
++..+.....
T Consensus 296 ~~~~~l~~~~ 305 (417)
T COG2223 296 LAAALLSLFL 305 (417)
T ss_pred HHHHHHHccc
Confidence 8888777655
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=215.09 Aligned_cols=267 Identities=14% Similarity=0.163 Sum_probs=202.5
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
.++.+.+..+...+..+......+.+|.+.+++|.+.++. +++.+.+.+++.+++++.|+++||+|||++++.+.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence 3445555555566666777778888999999999988777 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhH
Q 016428 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (390)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr 208 (390)
.++.+++.++++++.+++.|++.|++.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.+..+ ||
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~ 162 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR 162 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence 99999999999999999999999999988888888889999999999999999999999999999999999888777 99
Q ss_pred HHHHHHHHHHHHHHH-HhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccch
Q 016428 209 ICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF 287 (390)
Q Consensus 209 ~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
+.|++.++..++..+ ..++.||+++. ++++++ ....+++.++++.+
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------------------~~~~~~~~~~~~~~ 209 (394)
T PRK11652 163 ACYLFLLLLGAGVTFSMARWMPETRPA---DARRTR------------------------------VLASYRTLLSNRRF 209 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccCcc---ccchhH------------------------------HHHHHHHHHcChHH
Confidence 999987766655433 34556776421 000000 01224456667777
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCh
Q 016428 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK 351 (390)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 351 (390)
+......+.............+.+..+.++.+....+.......++.+++..+.+++.||.+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 273 (394)
T PRK11652 210 NCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 273 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555544444333333333445555554454444455566667777888888888888888743
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=209.94 Aligned_cols=276 Identities=15% Similarity=0.109 Sum_probs=201.7
Q ss_pred HHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHH-HhHHHHHHHHHHH
Q 016428 58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASIS 135 (390)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~-~~~~~~~i~~~~~ 135 (390)
+.+++..+......+.+|. +.+++|.+..+. |++.+.+.++..+.+++.|+++||+|||+.++ .+..+..++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 3466677777777888886 567899987776 99999999999999999999999999988765 4666667778888
Q ss_pred HhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhH--HHHHHHHHHHHHHHHHHhcccccccCchhHHHHHH
Q 016428 136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY--GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
++++|++.+++.|+++|.+.+...|....+..|+.|+++|++. .+....+.++|..+++.+++.+.+..+ ||+.|++
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~ 160 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLT 160 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHH
Confidence 9999999999999999988888888888888999887777654 577888889999999999999988877 9999999
Q ss_pred HHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHH
Q 016428 214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (390)
Q Consensus 214 ~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (390)
.++..++..+.. +++||+|+.. +.++ ...+.++.+++++++....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 206 (375)
T TIGR00899 161 AALAFVLCGVLVWLFLPSYPRGA----PGAL------------------------------TRLEVRGLLASRDTRLLFV 206 (375)
T ss_pred HHHHHHHHHHHHHHhCCCcccCc----cccc------------------------------CcchhhhhhcCcchHHHHH
Confidence 887766655544 4478765311 0000 0011223455666666555
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHH
Q 016428 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 370 (390)
..++............+.|..+.++.+....+..........+++.++.+++.||++||+.+.++..+..+....+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 284 (375)
T TIGR00899 207 ACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA 284 (375)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 554444433333445666665555555444555555566677788899999999999999887776665555444333
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=207.74 Aligned_cols=269 Identities=12% Similarity=-0.021 Sum_probs=192.5
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI 134 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~ 134 (390)
...++.++.........+.++.+.+|+|.+.++. |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~ 94 (402)
T TIGR00897 17 WGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA 94 (402)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 3444444444444444556677778999988777 99999999999999999999999999999999999999988776
Q ss_pred HH---h-hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHH-HHHHHhcccccccCchhHH
Q 016428 135 SA---T-TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRI 209 (390)
Q Consensus 135 ~~---~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~l~~~~g~wr~ 209 (390)
+. . .++++.+++.|+++|++.+...+....++.+++|+++|++++|+.+.+.++|. .+++.+++.+.+..| |+.
T Consensus 95 ~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~ 173 (402)
T TIGR00897 95 FIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMN 173 (402)
T ss_pred HHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHH
Confidence 53 3 35788889999999999888877778888999999999999999999999996 689999988888777 665
Q ss_pred HHHHHHHHHHHHHHH-hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchh
Q 016428 210 CFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288 (390)
Q Consensus 210 ~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (390)
.++......++..+. .++.++.++.. +++++++ .++....+++++++|.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 225 (402)
T TIGR00897 174 TLWSALAFVLTGGVIALFSNKDIFTPQ-HMQTREK---------------------------FSELGKAATILFTNPNVL 225 (402)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcc-cccCCcc---------------------------hhhHHHHHHHHHcChhHH
Confidence 555433332222222 23334332100 0000000 000011345678888888
Q ss_pred HHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH
Q 016428 289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ 355 (390)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 355 (390)
...+..++.....+....+.|.|..+ ++.+..+.+.......++..++.++.|+++||++||+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 226 LGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 77766666666655656667777644 4544444556667788899999999999999999887653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=206.84 Aligned_cols=269 Identities=14% Similarity=0.134 Sum_probs=202.3
Q ss_pred hcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHH
Q 016428 65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM 144 (390)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l 144 (390)
......++.+|.+.+++|.+.++. |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+.+ .+++++.+
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l 90 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL 90 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 334567889999999999988877 999999999999999999999999999999999999988888877 78899999
Q ss_pred HHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch-hHHHHHHHHHHHHHHHH
Q 016428 145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCL 223 (390)
Q Consensus 145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~-wr~~f~~~~~~~~~~~~ 223 (390)
++.|++.|++.+...+....++.|++| ++|++++++.+.+..+|..+++.+++.+.+..+. ||+.|.+.++..++...
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999888888888899886 6899999999999999999999998888766433 99998776554433322
Q ss_pred HhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhh
Q 016428 224 AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLS 303 (390)
Q Consensus 224 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (390)
.++|+.++ +.+ + +++......+++++++.++...+...+.......
T Consensus 170 --~~~~~~~~----~~~--~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (355)
T TIGR00896 170 --AWIPQVRR----RVA--A--------------------------NQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYS 215 (355)
T ss_pred --HHhhhhcc----ccC--C--------------------------CCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHH
Confidence 23344321 000 0 0000112345667777777665555555555555
Q ss_pred chhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHHhc
Q 016428 304 GINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAAS 372 (390)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
...+.|.|..+ .+.+....+.......++.++++++.|++.||+ +||+.+.++..+.+++...+.+..
T Consensus 216 ~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (355)
T TIGR00896 216 LIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP 284 (355)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 55667777654 344444566788888999999999999999999 456666677777777665555443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=210.31 Aligned_cols=274 Identities=16% Similarity=0.148 Sum_probs=190.8
Q ss_pred HHHHHHHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~ 131 (390)
+..+.++.+..........|.+|. +.+|+|.+.++. |++.+++.+++.++++++|+++||+|||++++.+.+...++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 334445556666667777788885 578999988777 99999999999999999999999999999999998887776
Q ss_pred HHHHH---h-----hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc
Q 016428 132 ASISA---T-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (390)
Q Consensus 132 ~~~~~---~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 203 (390)
.+... . .+|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+...|..++|++++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54332 1 358899999999999999988888889999999999999999999999999999999999998888
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhc
Q 016428 204 AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY 283 (390)
Q Consensus 204 ~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (390)
.+ ||+.+.+..+..++........||.++ ++ ++ + .+.++.++
T Consensus 175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~----------------------------~---~~~~~~~~ 216 (392)
T PRK12382 175 FG-FAALALTTMVLPLLAWAFNGTVRKVPA----HA--GE----------------------------R---PSLWSVVG 216 (392)
T ss_pred cC-hHHHHHHHHHHHHHHHHHHHhccCCCC----Cc--cc----------------------------C---chHHHHHH
Confidence 77 998877654443333222222233211 00 00 0 00111111
Q ss_pred ccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 016428 284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 362 (390)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 362 (390)
.++.......+..........+.+.|..+ .+. +.+......+++.+++.++.+++.||+++|+.+..+..+..
T Consensus 217 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 290 (392)
T PRK12382 217 --LIWKPGLGLALQGVGFAVIGTFVSLYFAS----KGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVET 290 (392)
T ss_pred --HHHHhHHHHHHHHHHHhHHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHH
Confidence 11111111122222222223344444433 222 24455566777888999999999999999999888888887
Q ss_pred HHHHHHHHhc
Q 016428 363 VSMAIQVAAS 372 (390)
Q Consensus 363 ~~~~~~~~~~ 372 (390)
++.+++...+
T Consensus 291 ~~~~~~~~~~ 300 (392)
T PRK12382 291 VGLLLLWLAP 300 (392)
T ss_pred HHHHHHHHcc
Confidence 7776655443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=211.68 Aligned_cols=272 Identities=20% Similarity=0.180 Sum_probs=192.2
Q ss_pred HhhhhcccccccchhhhhhccccCCcchhhHHHHHH--h---HHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHH
Q 016428 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM--C---LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS 135 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~--~---~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~ 135 (390)
+.+.+++..++...+.+.+++..+.++.+.+.+.+. + .++..+++++.|+++||+|||++++.+.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777776542222222444432 3 33345789999999999999999999999999999999
Q ss_pred HhhhhHH--------HHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc------
Q 016428 136 ATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK------ 201 (390)
Q Consensus 136 ~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~------ 201 (390)
++++++. .++++|+++|++.+...+....++.|++|+++|++..++...+..+|..+++.++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999875 47889999999999999999999999999999999999999999999999988766543
Q ss_pred --ccCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhh
Q 016428 202 --EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE 279 (390)
Q Consensus 202 --~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (390)
+..+ ||+.|++.++..++..+.....||+|++..+++ ++++...+.+
T Consensus 163 ~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~ 211 (394)
T TIGR00883 163 ALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE------------------------------KHKKKRGPIR 211 (394)
T ss_pred Hhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh------------------------------ccccccCCHH
Confidence 2345 999998877766665555555676653211100 0011122345
Q ss_pred hhhcccc--hhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q 016428 280 ELLYGRH--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS 357 (390)
Q Consensus 280 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 357 (390)
+.++++. ++......++..........+.+.|.++.++.+....+.......++..++.++.+++.||+|||+.+...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 291 (394)
T TIGR00883 212 ETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIF 291 (394)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 5565554 44444444444444444455666666555555555566677788889999999999999999999877655
Q ss_pred HHHHHH
Q 016428 358 FFSMAV 363 (390)
Q Consensus 358 ~~~~~~ 363 (390)
..+..+
T Consensus 292 ~~~~~~ 297 (394)
T TIGR00883 292 TVLAAL 297 (394)
T ss_pred HHHHHH
Confidence 444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=212.50 Aligned_cols=287 Identities=13% Similarity=0.102 Sum_probs=203.5
Q ss_pred hhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHH
Q 016428 48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP 127 (390)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~ 127 (390)
++|..+..+.+...........++..+|.+.+++|.+.++. +++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 93 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL 93 (455)
T ss_pred cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence 34666666666555555555667888999999999988887 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHH-HHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch
Q 016428 128 MIIGASISATTRNLIGMLL-GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 128 ~~i~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~ 206 (390)
.+++.++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+.+..|
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g- 171 (455)
T TIGR00892 94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG- 171 (455)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-
Confidence 9999999999999998875 5799999999876777788899996 789999999999999999999999999888888
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccc
Q 016428 207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH 286 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (390)
||+.|++.+++.++..+..+++.+.++.. .+.+.++.+ ........+ +.+.....++..+....++++++.
T Consensus 172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 242 (455)
T TIGR00892 172 WRGSFLILGGLLLHCCVCGALMRPVGPSQ-RVSKSKSKE----GLPPDGSTK----KLSKKSTAEKINRFLDFSLFTHRG 242 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccc-ccccccccc----cCCCCCccc----cccccchhhhhhhhcchHHhcCch
Confidence 99999998877765554443332221100 000000000 000000000 000000000001111125778888
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 016428 287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL 348 (390)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 348 (390)
++......++.....+....+++.|..+ .+.+..+.+......+++.++++++.+++.||.
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8877776666666655556666766654 344445566777788899999999999999973
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=206.34 Aligned_cols=285 Identities=19% Similarity=0.165 Sum_probs=203.6
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcch---hhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL---AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~ 129 (390)
...++++.++.........+.+|.+.+++|.+..+. ..|++.+++.++..+++++.|+++||+|||++++.+.+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 95 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG 95 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence 334455667777777788889999999999886553 23788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHH
Q 016428 130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (390)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~ 209 (390)
++.++++++++++.+++.|++.|++.+. .+....++.|++|+++|+++.++...+..+|..++|.+++.+.+..+ ||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~ 173 (408)
T PRK09874 96 IVMVLMGLAQNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRP 173 (408)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHH
Confidence 9999999999999999999999998654 56777889999999999999999999999999999999999888777 999
Q ss_pred HHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchh
Q 016428 210 CFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288 (390)
Q Consensus 210 ~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (390)
.|++.++..++..+.. ++.+|+++.. ++++..+ ..+..+.+++++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----------------------------~~~~~~~~~~~~~~ 221 (408)
T PRK09874 174 VFFITASVLFLCFLVTLFCIRENFQPV----SKKEMLH----------------------------MREVVTSLKNPKLV 221 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccc----cchhhhH----------------------------HHHHHHhCcCCchH
Confidence 9998777766655444 4455543210 0000000 00112234445544
Q ss_pred HHHH-HHHHHHHHHhhchhhHHHhHHHHHhhcCC---CchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q 016428 289 VVFI-GSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS 364 (390)
Q Consensus 289 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 364 (390)
.... ...+...........++.|..+..+.... ..+......+++.+++.+..|++.||++||+.+..+..+..++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 301 (408)
T PRK09874 222 LSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLL 301 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 3222 22222222222233445555443221111 1233445567788888999999999999999988887777766
Q ss_pred HHHHHHh
Q 016428 365 MAIQVAA 371 (390)
Q Consensus 365 ~~~~~~~ 371 (390)
.+.....
T Consensus 302 ~~~~~~~ 308 (408)
T PRK09874 302 LIPMSFV 308 (408)
T ss_pred HHHHHHh
Confidence 6555444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-25 Score=201.01 Aligned_cols=312 Identities=21% Similarity=0.228 Sum_probs=214.1
Q ss_pred HHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHH
Q 016428 56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS 135 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~ 135 (390)
+++.....++.....+..++.+..|+|-++.. +|+.+.+.++.+++.++.|+++|.+|||.+++.+.++..+|.+++
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~ 125 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGGSDNW---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC 125 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh
Confidence 44444444555566677789999999976544 699999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHH
Q 016428 136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215 (390)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~ 215 (390)
+.++|...++++..+.|+|.|.... ....++|..|.|.|....++...........++.++..+....+ |||.|++.+
T Consensus 126 atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~ 203 (599)
T PF06609_consen 126 ATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFI 203 (599)
T ss_pred hcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHH
Confidence 9999999999999999999887764 45668999999999988887776666666677778776666666 999999988
Q ss_pred HHHHHHHHHhh--cccCChhhHHhcCC---HHHHHHHHHHHh-----------------CCCC-----chhHHH------
Q 016428 216 VPAAILCLAMV--FCAESPHWLYKKGR---TAEAEAEFEKLL-----------------GGSH-----VKSSLA------ 262 (390)
Q Consensus 216 ~~~~~~~~~~~--~~~e~p~~~~~~~~---~~~~~~~~~~~~-----------------~~~~-----~~~~~~------ 262 (390)
+...+.++..+ +.|++. ...+++ ..+..++++.+. +... ....+.
T Consensus 204 i~~~i~~vl~~~fY~PP~~--~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~ 281 (599)
T PF06609_consen 204 IWSGIALVLIFFFYFPPPR--AQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGF 281 (599)
T ss_pred HHHHHHHHHHHHHhCCCch--hhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHH
Confidence 77666554432 334332 222221 223333344321 0000 000000
Q ss_pred ----HhhhcccC-CCCccchhhhhhcc-cchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCC---CchHHHHHHHHH
Q 016428 263 ----ELSKLDRG-DDGDIVKFEELLYG-RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIA 333 (390)
Q Consensus 263 ----~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 333 (390)
-.--.|.. ..+++.-+.+++++ |.+...++..++....++......|.....+++.+.. ..+....+.+.+
T Consensus 282 ~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg 361 (599)
T PF06609_consen 282 VLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFG 361 (599)
T ss_pred HHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHH
Confidence 00001111 12234455678876 4566666666666666665555556555555555443 356677788888
Q ss_pred HHHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHHHHHHhccc
Q 016428 334 NLLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSS 374 (390)
Q Consensus 334 ~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
..++..+.+.+..+++| |+.++++.+++.+++.+++....+
T Consensus 362 ~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~ 403 (599)
T PF06609_consen 362 SCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPD 403 (599)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999887 455567877777776666655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=199.88 Aligned_cols=261 Identities=28% Similarity=0.429 Sum_probs=218.4
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI 134 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~ 134 (390)
.+.+..+....+.....+..|.+.+++|.+.++. +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 3455667778888888899999999998877766 99999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHH
Q 016428 135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214 (390)
Q Consensus 135 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~ 214 (390)
..++++++.++++|++.|++.+...+....++.|++|+|+|++.+++......+|..+++.+++.+.+..+ ||+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLIL 159 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887 99999988
Q ss_pred HHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHH
Q 016428 215 IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS 294 (390)
Q Consensus 215 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (390)
++..++..+...+++ |.++...+..
T Consensus 160 ~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~ 184 (352)
T cd06174 160 AILGLLLALLLLFLL-------------------------------------------------------RLLLLLALAF 184 (352)
T ss_pred HHHHHHHHHHHHHHH-------------------------------------------------------HHHHHHHHHH
Confidence 777776655554432 2344444455
Q ss_pred HHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChH-HHHHHHHHHHHHHHHHHHhcc
Q 016428 295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKA-LLQWSFFSMAVSMAIQVAASS 373 (390)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~ 373 (390)
++............+.+..+..+.+..+.+.......++..++.++.+++.||++||+ .+..+..+..++.+.+....+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 264 (352)
T cd06174 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS 264 (352)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555554454555666665544444555677888899999999999999999999999 888888888888877765543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-27 Score=213.81 Aligned_cols=279 Identities=17% Similarity=0.107 Sum_probs=208.6
Q ss_pred HHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHh--
Q 016428 60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-- 137 (390)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~-- 137 (390)
.++..+......+.+|.+.++++.+..+. |++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~ 103 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQMMTGSTLQV--GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNA 103 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHH
Confidence 44555555666778888988888765555 99999999999999999999999999999999988888777665542
Q ss_pred ---hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHH
Q 016428 138 ---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214 (390)
Q Consensus 138 ---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~ 214 (390)
.++++.+++.|+++|++.+...+...+++.|+.|+++|+++.++......+|..+||.+++.+.+..+ |++.|++.
T Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~ 182 (417)
T PRK10489 104 FLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGLA 182 (417)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHHH
Confidence 56789999999999999988888888999999999999999999999999999999999999988777 89999887
Q ss_pred HHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHH
Q 016428 215 IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS 294 (390)
Q Consensus 215 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (390)
++..++..+..+.+||+++.. +++ ++.. ++....++.+++++.++...+..
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~--~~~-~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~ 233 (417)
T PRK10489 183 AAGTFITLLPLLRLPALPPPP--QPR-EHPL--------------------------RSLLAGFRFLLASPVVGGIALLG 233 (417)
T ss_pred HHHHHHHHHHHHhCCCCCCCC--ccc-ccch--------------------------HHHHHHHHHHHcChHHHHHHHHH
Confidence 777766666666677754311 000 0000 00011234456666666555444
Q ss_pred HHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHh
Q 016428 295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
++... ......++|.|..+.++.+....+.......++.+++.++.+++.||.++++.+..+..+.+++.+++...
T Consensus 234 ~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T PRK10489 234 GLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM 309 (417)
T ss_pred HHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc
Confidence 43322 22334566777766556655566777888889999999999999999877777777777777776655443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=197.21 Aligned_cols=280 Identities=11% Similarity=0.017 Sum_probs=211.3
Q ss_pred HHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHH----HHhHHHHHHH
Q 016428 56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF----QLCALPMIIG 131 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l----~~~~~~~~i~ 131 (390)
+.+.++..........|.+|.+.+++|.+.++. |++.+++.++..++++++|+++||+|||+.. ..+..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence 445566667777888899999999999988777 9999999999999999999999999985433 222222222
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHH
Q 016428 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (390)
Q Consensus 132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f 211 (390)
..+..+++++.+++.|+++|.+.+...|...++..|+ +++|++..+......++|.+++|++++.+.+..| ||..|
T Consensus 86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f 161 (382)
T TIGR00902 86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNIL 161 (382)
T ss_pred -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHH
Confidence 2445678999999999999999888888888887664 4778999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHH
Q 016428 212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (390)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (390)
.+.....++.++ .+.++|+++. +++.++ ++++...+.++++++|+++...
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~--------------------------~~~~~~~~~~~~l~~~~~~~~l 211 (382)
T TIGR00902 162 AILTAGLAFMLI-GFLIKPTIPP---KDAIPE--------------------------DESQGDSAFIALLKNPMNLRFL 211 (382)
T ss_pred HHHHHHHHHHHH-HHHcCCCCCC---Cccccc--------------------------cccccchhHHHHHcChHHHHHH
Confidence 876554333333 3333443210 000000 0011122466788999999888
Q ss_pred HHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHh
Q 016428 292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
+..++..........+.+.|.++ .+.+....+.......++.+++.++.+++.||+++|+.+.++.++..+...++.+.
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T TIGR00902 212 AAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888777777767777777765 45555556777777888899999999999999999999999999999888777655
Q ss_pred cc
Q 016428 372 SS 373 (390)
Q Consensus 372 ~~ 373 (390)
++
T Consensus 291 ~~ 292 (382)
T TIGR00902 291 EA 292 (382)
T ss_pred hh
Confidence 44
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-27 Score=199.04 Aligned_cols=260 Identities=15% Similarity=0.097 Sum_probs=204.1
Q ss_pred ccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchh
Q 016428 80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159 (390)
Q Consensus 80 ~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 159 (390)
+...+.++.++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++.+...++++++.++|+.++++|.+||+|.++..
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 33344555566999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCCc-cchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhc
Q 016428 160 TVAALYVTEVSPPF-VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238 (390)
Q Consensus 160 ~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 238 (390)
+...++++|.+|++ +|++++|+...+.++|.++||++||.+.+..| .+..|++.++++++...+.+++-|..+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~----- 251 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE----- 251 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc-----
Confidence 99999999999865 58999999999999999999999999999999 799999999998888777766544311
Q ss_pred CCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhh
Q 016428 239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS 318 (390)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (390)
.+ +....+..+++++++++..+...................++.+..+.+..
T Consensus 252 ~~----------------------------~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~ 303 (464)
T KOG3764|consen 252 MD----------------------------PDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFT 303 (464)
T ss_pred cC----------------------------ccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccC
Confidence 00 00122344577888888887665544444433333345566666555555
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHH--HHHHHHHHHHHHHHHHhcc
Q 016428 319 AGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALL--QWSFFSMAVSMAIQVAASS 373 (390)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~--~~~~~~~~~~~~~~~~~~~ 373 (390)
.+.+.|..+....+...++..+.|.+.||++..+++ ..+.+..+..+....+..+
T Consensus 304 p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~ 360 (464)
T KOG3764|consen 304 PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS 360 (464)
T ss_pred CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh
Confidence 555788899999999999999999999999943333 3344444444444444443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=200.84 Aligned_cols=280 Identities=16% Similarity=0.160 Sum_probs=201.7
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-----hhHHH-HHHhHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCAL 126 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-----Grr~~-l~~~~~ 126 (390)
...+++..+..+......++.+|...++.|.+.++. |.+ +.....+ ++.+++|+++||+ |||+. ++.+.+
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 444555566667777777888999999999887776 664 4444444 6899999999999 99885 667777
Q ss_pred HHHHHHHHHHhh---hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc-
Q 016428 127 PMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE- 202 (390)
Q Consensus 127 ~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~- 202 (390)
..+++...+++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+
T Consensus 90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~ 169 (491)
T PRK11010 90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR 169 (491)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777877777775 4788899999999999999999999999999999999999999999999999999999998888
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhh
Q 016428 203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL 282 (390)
Q Consensus 203 ~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (390)
..| ||..|++.++..++..+..++.||+++.. +++++. ++....++++++
T Consensus 170 ~~G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~--------------------------~~~~~~~l~~~~ 219 (491)
T PRK11010 170 YLG-WQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTL--------------------------EQAVVAPLRDFF 219 (491)
T ss_pred ccC-HHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccch--------------------------hhhHHHHHHHHH
Confidence 456 99999998877776666655677764310 000000 000112355667
Q ss_pred cccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHH-HHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 016428 283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN-VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM 361 (390)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 361 (390)
+++..+......++..........+.+.|+.+..+.+..+.+... ....++.+++.+++|+++||+++|+.+.++.++.
T Consensus 220 ~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~ 299 (491)
T PRK11010 220 GRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQ 299 (491)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 667776665555555544444455566665444444444455554 3445788999999999999999988777666555
Q ss_pred HHHHH
Q 016428 362 AVSMA 366 (390)
Q Consensus 362 ~~~~~ 366 (390)
++..+
T Consensus 300 ~l~~l 304 (491)
T PRK11010 300 GVSNA 304 (491)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=195.22 Aligned_cols=276 Identities=13% Similarity=0.060 Sum_probs=196.9
Q ss_pred HHHHhhhhcccccccchh-hhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHH
Q 016428 58 LSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA 136 (390)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~ 136 (390)
...++.........+.++ ++.+++|.+..+. |++.+.+.++..+.+++.|+++||+|||++++.+.++.+++.+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~ 94 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA 94 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555 4678889887776 9999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHH
Q 016428 137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (390)
Q Consensus 137 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~ 216 (390)
++++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+. ..+ ||+.|++.++
T Consensus 95 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~ 172 (400)
T PRK11646 95 IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAV 172 (400)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHH
Confidence 99999999999999999998888888899999999999999999999999999999999999998 556 9999998777
Q ss_pred HHHHHHHH-hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHH
Q 016428 217 PAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST 295 (390)
Q Consensus 217 ~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (390)
..++..+. .++.||.+. .+.+ ++...+++++++++.++......+
T Consensus 173 ~~~~~~i~~~~~~~~~~~-----~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 218 (400)
T PRK11646 173 LFVLAAAFNAWLLPAYKL-----STVR-----------------------------TPVREGMTRVLRDKRFVTYVLTLT 218 (400)
T ss_pred HHHHHHHHHHHhCCcccc-----cccc-----------------------------hhhHHHHHHHHcCchHHHHHHHHH
Confidence 66655443 344554310 0000 001123456677777765544433
Q ss_pred HHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHh-hhCChHHHHHHHHHHHHHHHHHHHhc
Q 016428 296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMAVSMAIQVAAS 372 (390)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
.............|.|.++..+ ...+.+......++....+....++..| |.+.++.+..+..+.+++..++...+
T Consensus 219 ~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (400)
T PRK11646 219 GYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS 295 (400)
T ss_pred HHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 3333322223456666655433 3334455555566655555555555555 45656666677777777766555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=202.82 Aligned_cols=278 Identities=12% Similarity=0.073 Sum_probs=206.2
Q ss_pred HHHHHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~ 133 (390)
.+....++.........+.+|. +.+++|++..+. |++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus 11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 3344555566666666666654 567899988777 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHH
Q 016428 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
..+++++++.++++|++.|.+.+...+....+..|..|+++|+++.++.+...++|..++|.+++.+.+ .+ |+..|++
T Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~ 166 (395)
T PRK10054 89 AIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWL 166 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHH
Confidence 999999999999999999988777788888999999999999999999999999999999999998875 46 9999998
Q ss_pred HHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHH
Q 016428 214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (390)
Q Consensus 214 ~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (390)
.++..++..+.. +++||+++ ++++++ ++..+.++.+++|.++....
T Consensus 167 ~~~~~~i~~i~~~~~~~~~~~----~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 213 (395)
T PRK10054 167 AAICSAFPLVFIQIWVQRSEK----AIATET-----------------------------GSVWSPSVLLQDKALLWFTC 213 (395)
T ss_pred HHHHHHHHHHHHHHHHhcccc----ccccch-----------------------------hhhhhhhhhccCceehHHHH
Confidence 777666654443 34555421 000000 00011245678888887776
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCC---chHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 016428 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 369 (390)
..++..........+.+.|.+...+ .+.+ .+.......+......+..+++.||.++|+.+..+..+..++...+.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 292 (395)
T PRK10054 214 SGFLASFVSGAFASCISQYVMVVAD-SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI 292 (395)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhcc-cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 6666555544444456666654422 2222 23344445555566677889999999999988888877777776655
Q ss_pred H
Q 016428 370 A 370 (390)
Q Consensus 370 ~ 370 (390)
.
T Consensus 293 ~ 293 (395)
T PRK10054 293 F 293 (395)
T ss_pred H
Confidence 4
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-26 Score=197.03 Aligned_cols=323 Identities=19% Similarity=0.265 Sum_probs=220.1
Q ss_pred CchhhhHHHHHHHHHHHhhhhcccccccchhhhhhccc-cC------CcchhhHHHHHHhHHHHHHHHHhHHHhhchhhh
Q 016428 45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLG-FN------GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117 (390)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Gr 117 (390)
..++..+.+.+..++.+.++++...++.+.|.+...+. -+ ++.. .+.+..+-.+|..+||++.|++.||+||
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i-~~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGV-LALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34555777888889999999999999998887765442 11 1222 3788999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhhh-------hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHH
Q 016428 118 RRAFQLCALPMIIGASISATTR-------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL 190 (390)
Q Consensus 118 r~~l~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 190 (390)
|+++...++++.+++++++++. -..++...|++.|+|.|+-+|...+..+|....++||...+...+..+.|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 9999999999999999888752 257888899999999999999999999999999999998888777666666
Q ss_pred HHHHHhcccc----cccC----------chhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcC-CHHHHHHHHHHHhCCC
Q 016428 191 MGSLLIGIPV----KEIA----------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKG-RTAEAEAEFEKLLGGS 255 (390)
Q Consensus 191 ~~~~~~~~~l----~~~~----------g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~-~~~~~~~~~~~~~~~~ 255 (390)
+.|.+++..+ .... +-||..+.+.+++.++.....+.+||++++-.... +.+.+. ++..+..
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~ 270 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVL 270 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccc
Confidence 6555544332 2111 12999999999999999988899999988653222 222222 1111111
Q ss_pred CchhHHHHhhhcccCCCCc---cchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCch---H----
Q 016428 256 HVKSSLAELSKLDRGDDGD---IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---L---- 325 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---- 325 (390)
.. .++..+..+...+.+ ...+.+.+..++. ..++.....++..-...+....+...+++.-+...+ .
T Consensus 271 ~~--~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~ 347 (538)
T KOG0252|consen 271 SV--DIEAESTAESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELF 347 (538)
T ss_pred cc--ccchhhccccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHH
Confidence 11 111111111111111 1123344444433 344444555555555566666777777664332211 1
Q ss_pred ----H-HHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhccc
Q 016428 326 ----A-NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS 374 (390)
Q Consensus 326 ----~-~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
. ..+.....++|..+...++|++||++..+.++.++.+..+.+....+.
T Consensus 348 ~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~ 401 (538)
T KOG0252|consen 348 KVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ 401 (538)
T ss_pred HHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc
Confidence 1 122223334466677789999999999999999999999888876663
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-25 Score=192.74 Aligned_cols=274 Identities=13% Similarity=0.058 Sum_probs=186.0
Q ss_pred cccccccchhhhhhccccCCcc-hhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHH
Q 016428 66 HLGVVNEPLESISLDLGFNGNT-LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM 144 (390)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l 144 (390)
.+...+...|.+.+|+|++.++ . |.+.++++.+|++++++.|+++||+|.|+++..+.+.+++.+++.++++++..+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~--G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L 118 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVT--NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHM 118 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677889999999999888 5 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHH---HHHHHHHH
Q 016428 145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV---SIVPAAIL 221 (390)
Q Consensus 145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~---~~~~~~~~ 221 (390)
.+.|++.|++.|... ....++..|+|+++|+++.++..++..+|.++++++++.+. ..| ||+.+.+ ......+.
T Consensus 119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g-Wr~y~~Ln~Isl~s~~~a 195 (511)
T TIGR00806 119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG-WISYSTLNIISLVFMTFS 195 (511)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-chhHHHHHHHHHHHHHHH
Confidence 999999999999999 88999999999999999999999999999999999999844 456 8876654 33333444
Q ss_pred HHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCC-----CCccchhhhhhcccchhHHHHHHHH
Q 016428 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD-----DGDIVKFEELLYGRHFRVVFIGSTL 296 (390)
Q Consensus 222 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (390)
++..+++|..++.+.-+++.+.......+.....+... .+..+..+.. ..-..++++..+|+......+
T Consensus 196 ~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSl---- 269 (511)
T TIGR00806 196 VFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG--GKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSL---- 269 (511)
T ss_pred HHHHHhCCCCchhhhhccccccccccccccccCCCCCc--cccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhH----
Confidence 55667888666544433221110000000000000000 0000000000 001122334455555443322
Q ss_pred HHHHHhhchhhHHHhHHHHHhhcCC----CchHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 016428 297 FALQQLSGINAIFYFSSSVFKSAGL----SSGLANVFVGIANLLGSVVAMVLMDKLGR 350 (390)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 350 (390)
.+....+++..+..|.+.+.+.-.- -.|..-....+.+.+..+..|++-.++.+
T Consensus 270 Wwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~ 327 (511)
T TIGR00806 270 WWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR 327 (511)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 2222233355566666666543211 23456666777778888888988555543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=191.56 Aligned_cols=275 Identities=12% Similarity=0.071 Sum_probs=200.7
Q ss_pred HHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhH----HHHHHhHHHHHHHHHHH
Q 016428 60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR----RAFQLCALPMIIGASIS 135 (390)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr----~~l~~~~~~~~i~~~~~ 135 (390)
++..........|.+|.+.+|+|.+.++. |++.+++.++..++++++|+++||+||| +.+.++..+. .....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence 44445566778899999999999987777 9999999999999999999999999983 3333222221 22334
Q ss_pred HhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHH
Q 016428 136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215 (390)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~ 215 (390)
..+++++.+++.|++.|++.+...+...++..++ +++|+++.+......++|..+||++++.+.++.| ||..|++.+
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~ 165 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILT 165 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence 4568899999999999999888888887777776 4568888999999999999999999999999888 999998876
Q ss_pred HHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHH
Q 016428 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST 295 (390)
Q Consensus 216 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (390)
+..++..+..++.||+++ +++++ +..++...++++++++|.++...+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~----~~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~ 215 (382)
T PRK11128 166 AGVASMLLGQLLRPTIMP----QGESR--------------------------QQESAGWPAWKALLKEPTVWRFLLCVS 215 (382)
T ss_pred HHHHHHHHHHHccCCCCC----ccccc--------------------------cccccccchHHHHHcChhHHHHHHHHH
Confidence 655444444444444311 00000 000111335778999999988777666
Q ss_pred HHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhc
Q 016428 296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS 372 (390)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
+............+.|..+ .+.+....+.......++.++..++.+++.||+++|+.+..+..+.+++.+++...+
T Consensus 216 l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~ 291 (382)
T PRK11128 216 LLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT 291 (382)
T ss_pred HHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6665555555566666643 344444456666677788888999999999999999998888888888776655443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=223.98 Aligned_cols=278 Identities=11% Similarity=-0.010 Sum_probs=204.0
Q ss_pred ccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHH---HhhhhHHHHHHH
Q 016428 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATTRNLIGMLLG 147 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~ 147 (390)
....+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++.+.++..++.++. ..+++++.++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV 109 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34455566677776666556899999999999999999999999999999999887766555544 345789999999
Q ss_pred HHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc--------CchhHHHHHHHHHH-H
Q 016428 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--------AGWWRICFWVSIVP-A 218 (390)
Q Consensus 148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~--------~g~wr~~f~~~~~~-~ 218 (390)
|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+++++++.+. .++|++.+.+..+. .
T Consensus 110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1146)
T PRK08633 110 TFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVA 189 (1146)
T ss_pred HHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998765 23355555443333 3
Q ss_pred HHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHH
Q 016428 219 AILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA 298 (390)
Q Consensus 219 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (390)
++.++..+.+||+|+....+.+.++ . .........++.+++++.++..++..++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (1146)
T PRK08633 190 VLGLIFAYRLPKVPAAAPEVFDKKK-Y-----------------------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFW 245 (1146)
T ss_pred HHHHHHHhcCcCCCCCCcccccccc-c-----------------------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3334444567776542111000000 0 000001123556777788887776666666
Q ss_pred HHHhhchhhHHHhHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhc
Q 016428 299 LQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS 372 (390)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
+.......+++.|....++.+.. ..+.+.....++.+++.++.+++.||+++++.+.++.++.+++.+++.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1146)
T PRK08633 246 FISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP 320 (1146)
T ss_pred HHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh
Confidence 65555566777777776666655 667788888899999999999999999988888777777777666655443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=188.09 Aligned_cols=273 Identities=13% Similarity=0.123 Sum_probs=179.1
Q ss_pred HHHHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHH-HHHHHHHhHHHhhchhhhHHHH-HHhHHHHHHHH
Q 016428 56 ATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAF-QLCALPMIIGA 132 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~-~~~i~~~~~g~l~d~~Grr~~l-~~~~~~~~i~~ 132 (390)
..+..++.........|.+|. +.+++|.+.++. |++.+.+.+ ++.++.++.++ +||+|||+.+ +.+.+..+++.
T Consensus 20 ~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~ 96 (393)
T PRK15011 20 FLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC 96 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence 334456666666666676665 578899988776 898776544 66666655666 9999999875 55666667888
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccc--hhHHHHHHHHHHHHHHHHHHhcccccccCchhHHH
Q 016428 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (390)
Q Consensus 133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~ 210 (390)
.+.+++++++.+++.+.+.|...+...+....++.|+.++++| +...++.+.+.++|.+++|++++.+.++.| ||+.
T Consensus 97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~ 175 (393)
T PRK15011 97 TLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVM 175 (393)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHH
Confidence 8888999999887665555544556677888888888776655 345578888999999999999999998888 9999
Q ss_pred HHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhH
Q 016428 211 FWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 289 (390)
Q Consensus 211 f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
|++.++..++..+.. +++||+++ +.+.++ + +. + ..++ +.+..+.
T Consensus 176 f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~----------------------~~-~----~~~~--~~~~~~~ 220 (393)
T PRK15011 176 YLSAAVAFIVCGVMVWLFLPSMRK----ELPLAT--G----------------------TL-E----APRR--NRRDTLL 220 (393)
T ss_pred HHHHHHHHHHHHHHHHhhcCccCC----CCcccc--c----------------------cc-c----cccc--ccccHHH
Confidence 998877766655444 45777642 110000 0 00 0 0000 0122222
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 016428 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (390)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 367 (390)
.................+.|.|.++.++.+....+.......++.+++.++.|+++||++||+.+..+.....+.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~ 298 (393)
T PRK15011 221 LFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAG 298 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 222223333333333345666666655555445566666666777889999999999999998877665555544433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=188.79 Aligned_cols=269 Identities=14% Similarity=0.078 Sum_probs=191.7
Q ss_pred cccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-----hhHHH-HHHhHHHHHHHHHHHHhh---
Q 016428 68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCALPMIIGASISATT--- 138 (390)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-----Grr~~-l~~~~~~~~i~~~~~~~~--- 138 (390)
...++..|.+.+|+|++.++. |+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....++.
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~ 80 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS 80 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 456678899999999998877 887655 444454 99999999998 89887 467788888877777777
Q ss_pred hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch-------hHHHH
Q 016428 139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRICF 211 (390)
Q Consensus 139 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~-------wr~~f 211 (390)
.+.+.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+.+..+. ||..|
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF 160 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence 45666777788889888888899999999999999999999999999999999999999888766542 99999
Q ss_pred HHHHHHHHHHHHHhhc-ccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccc---h
Q 016428 212 WVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH---F 287 (390)
Q Consensus 212 ~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 287 (390)
++.++..++..+..++ .||+++. +.++++..+ +....++++++++. +
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 211 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQ--------------------------AVLKPIREFFQRKNMIQA 211 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcc---cccchhHHH--------------------------HHHHHHHHHHHhcCchHH
Confidence 9888777766555443 4664221 000000000 00113455666665 5
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHH-HHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 016428 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366 (390)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 366 (390)
+...+..++..........+.+.|..+ .+.+..+.+......+ +..+++.++++++.||+|+|+.+..+.++.+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~ 290 (356)
T TIGR00901 212 LLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNA 290 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 555555555555555555667777665 3333333344444444 56789999999999999999998888887777766
Q ss_pred HHHH
Q 016428 367 IQVA 370 (390)
Q Consensus 367 ~~~~ 370 (390)
++.+
T Consensus 291 ~~~~ 294 (356)
T TIGR00901 291 GFVW 294 (356)
T ss_pred HHHH
Confidence 5544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=187.82 Aligned_cols=276 Identities=18% Similarity=0.122 Sum_probs=199.0
Q ss_pred HHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-----hhHH-HHHHhHHHHHHH
Q 016428 58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRR-AFQLCALPMIIG 131 (390)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-----Grr~-~l~~~~~~~~i~ 131 (390)
..++..+.........+|.+.++.|.+.++. |++..+... .+..+++|+++||+ |||+ .++.+.++.+++
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 4456667777777888999999999998887 888777665 58999999999999 8765 788888888888
Q ss_pred HHHHHhh---hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc-Cchh
Q 016428 132 ASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWW 207 (390)
Q Consensus 132 ~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-~g~w 207 (390)
....++. ++++.+++..++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++..+.+. .| |
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-w 160 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-W 160 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-H
Confidence 8887776 35777888888888888888899999999999999999999999999999999999998888875 46 9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccch
Q 016428 208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF 287 (390)
Q Consensus 208 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
|..|++.++..++..+..++.||+++. +++.++.. ++...++++++++|.+
T Consensus 161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~--------------------------~~~~~~~~~l~~~~~~ 211 (402)
T PRK11902 161 GNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLG--------------------------EAVVGPLRDFFSRRGA 211 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccc---ccccchhH--------------------------HHHHHHHHHHHhCcCH
Confidence 999999777766655555667776431 10000000 0011245678888888
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHH-HHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 016428 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366 (390)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 366 (390)
+..++..++............+.+..+..+.+..+.+......+ ++.+++.++.+++.||+++|+.+..+..+..+..+
T Consensus 212 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l 291 (402)
T PRK11902 212 WALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL 291 (402)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 87776655555443322233333433333333223344443333 45789999999999999999887776666555543
Q ss_pred H
Q 016428 367 I 367 (390)
Q Consensus 367 ~ 367 (390)
.
T Consensus 292 ~ 292 (402)
T PRK11902 292 G 292 (402)
T ss_pred H
Confidence 3
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-23 Score=174.64 Aligned_cols=287 Identities=15% Similarity=0.187 Sum_probs=235.6
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~ 132 (390)
+..+....++.++......+.+|++.+.++++..+. +++...++.|+.+.+++.|++.+|+|+|+.++.|+.++++++
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA 92 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445555567778888888999999999999998888 999999999999999999999999999999999999999999
Q ss_pred HHHH---hhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc------
Q 016428 133 SISA---TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI------ 203 (390)
Q Consensus 133 ~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~------ 203 (390)
.+.. ...+|..++++-++.|.|.+...+....++....++++..+.+++.+..+++|.+++|++++.+..+
T Consensus 93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~ 172 (422)
T COG0738 93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM 172 (422)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 9984 6678999999999999999999999999999999998899999999999999999999999988763
Q ss_pred ------------CchhHHHHHHHHHHHHHHHHHhhc--ccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhccc
Q 016428 204 ------------AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDR 269 (390)
Q Consensus 204 ------------~g~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (390)
...||++|...+...++..+.... +|+.++ ++ ++
T Consensus 173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~--------~~------------------------~~ 220 (422)
T COG0738 173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV--------AA------------------------PS 220 (422)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc--------cc------------------------cc
Confidence 112788888877766666555543 333311 00 01
Q ss_pred CCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhC
Q 016428 270 GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG 349 (390)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 349 (390)
..+.+.....+++++|+++...++.+++.........+++.|+.+..+.+..++.........+.++|++++.++..|+.
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~ 300 (422)
T COG0738 221 LGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIK 300 (422)
T ss_pred ccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11111225778999999999999999999999998899999988765555556677888899999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcc
Q 016428 350 RKALLQWSFFSMAVSMAIQVAASS 373 (390)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~ 373 (390)
..+.+.+...+..+.++...+..+
T Consensus 301 ~~k~Laf~a~~~ill~~~~~l~~g 324 (422)
T COG0738 301 PEKYLAFYALIAILLLLAVALIGG 324 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 988887777666666666555554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=215.89 Aligned_cols=286 Identities=13% Similarity=0.061 Sum_probs=202.3
Q ss_pred HHHHHHhhhhcccccccch-hhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHH---hHHHHHHH
Q 016428 56 ATLSSFLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL---CALPMIIG 131 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~---~~~~~~i~ 131 (390)
.+++.+.+.+....+.... ..+..+.+.+... ..++..+++.+.+.++++++|+++||+|||+++.. +.+...+.
T Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~ 98 (1140)
T PRK06814 20 QFFGAFNDNFLKNALVILILYGLSGALGAYNNA-LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAAL 98 (1140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhccccccchHH-HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333232 2344444433222 34788999999999999999999999999997533 22333333
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHH
Q 016428 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (390)
Q Consensus 132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f 211 (390)
.+.+...+++++++++|+++|++.+...|+..+++.|++|+++|++++++.+++..+|.++||++++++....+ |++.|
T Consensus 99 ~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~ 177 (1140)
T PRK06814 99 AIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILV 177 (1140)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHH
Confidence 33334458999999999999999999999999999999999999999999999999999999999999999887 99999
Q ss_pred HHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHH
Q 016428 212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (390)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (390)
+..++..++..+..+++|+++... ++...+ .... +.....++.+.+++.++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~-----------------------~~~~~~~~~~~~~~~~~~~~ 231 (1140)
T PRK06814 178 ALLMGIAVLGWLASLFIPKTGNAA--PDLKID-RNII-----------------------RSTITLLKYAKADKRIWLAI 231 (1140)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC--CCCeec-cchH-----------------------HHHHHHHHHHhcCchHHHHH
Confidence 555555555555556676653210 000000 0000 00012356677888888888
Q ss_pred HHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 016428 292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369 (390)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 369 (390)
+..++..+.......++|.|..+.++......+.+....+++.+++.++.+++.|+..+++.+..+.++.+++.+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (1140)
T PRK06814 232 LGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLA 309 (1140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHH
Confidence 877777766666667888888877776666678888999999999999999999887776665555555555444333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-23 Score=185.54 Aligned_cols=285 Identities=18% Similarity=0.139 Sum_probs=194.5
Q ss_pred HHHHHHHhhhhcccccccchhhh-hhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~ 133 (390)
.+....++.........+.+|.+ .+++|.+..+. |++.+++.++..+++++.|+++||+|||+.++.+....+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34445556666666666777665 45689887776 9999999999999999999999999999999987776655443
Q ss_pred HH---Hhh-----hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc
Q 016428 134 IS---ATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (390)
Q Consensus 134 ~~---~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g 205 (390)
.. .+. +....+++.|++.|++.+...+....+..|.. +++++..+......++|..++|.+++.+.+. +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~ 160 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-D 160 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc-C
Confidence 32 112 23345567799999998888888877777753 3345667777788889999999999988664 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc-ccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcc
Q 016428 206 WWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG 284 (390)
Q Consensus 206 ~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (390)
||+.|++.++..++..+..+. .||+|+. ++.++ . . +.+.++.+..+.++++++
T Consensus 161 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~-----------------~-~~~~~~~~~~~~~~~l~~ 214 (396)
T TIGR00882 161 -PQIVFWLGSGFALILMLLLMFAKPKAPSS----ATVAN---A-----------------L-GANASAFSLKLALELFRQ 214 (396)
T ss_pred -chHHHHHHHHHHHHHHHHHHHhCCCCchh----hhhhc---c-----------------c-ccccCCCCHHHHHHHHcC
Confidence 999999887777766555544 3443220 00000 0 0 000111222356788889
Q ss_pred cchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCC---chHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 016428 285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM 361 (390)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 361 (390)
|.++......+...........+.+.|.++.++..+.+ .+.......+...++.+..+++.||+++|+.+.++..+.
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~ 294 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIM 294 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 88876665554444443344446677776665432222 355666677788888999999999999999998888887
Q ss_pred HHHHHHHHH
Q 016428 362 AVSMAIQVA 370 (390)
Q Consensus 362 ~~~~~~~~~ 370 (390)
++...+...
T Consensus 295 ~l~~~~~~~ 303 (396)
T TIGR00882 295 SVRIIGSSF 303 (396)
T ss_pred HHHHHHHHh
Confidence 776665444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=182.55 Aligned_cols=284 Identities=18% Similarity=0.108 Sum_probs=178.9
Q ss_pred HHHhhhhcccccccchhhh-hhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHH-
Q 016428 59 SSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA- 136 (390)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~- 136 (390)
..++.........+.+|.+ .+++|++..+. |++.+++.++..++++++|+++||+|||++++++..+.+++.....
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 95 (420)
T PRK09528 18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFI 95 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455666554 45589888776 9999999999999999999999999999999887666655433221
Q ss_pred --hhh-----hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHH
Q 016428 137 --TTR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (390)
Q Consensus 137 --~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~ 209 (390)
.++ .....++++++.|.+.....+....+..+ . .+++++..+.......+|..++|.+++.+.+. + |++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~ 171 (420)
T PRK09528 96 YVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQI 171 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-chH
Confidence 111 11122334444444433333333333322 2 34567788888888999999999999988764 5 899
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhH
Q 016428 210 CFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 289 (390)
Q Consensus 210 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
.|++.++..++..+..++.+++++.. +++.++. .+++++....+.++.+++|.++.
T Consensus 172 ~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~~~~ 227 (420)
T PRK09528 172 NFWLGSGSALILLVLLFFAKPDAPST--AKVANAL----------------------GANASAVSLKDALALLKLPKFWF 227 (420)
T ss_pred hHHHHHHHHHHHHHHHhcccccccch--hhhccch----------------------hcccccccHHHHHHHccCCCeEe
Confidence 99988777776665555543332110 0000000 00001111223456778888776
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCC---chHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 016428 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366 (390)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 366 (390)
..+................+.|..+..+..+.+ .+.......++.+++.++.|++.||+++|+.+..+.++..++.+
T Consensus 228 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~ 307 (420)
T PRK09528 228 LVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRII 307 (420)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 555444443333333445677776655433332 35566667788889999999999999999998888888877776
Q ss_pred HHHHhc
Q 016428 367 IQVAAS 372 (390)
Q Consensus 367 ~~~~~~ 372 (390)
++.+..
T Consensus 308 l~~~~~ 313 (420)
T PRK09528 308 GSGFAT 313 (420)
T ss_pred HHHhcc
Confidence 665543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=183.91 Aligned_cols=308 Identities=12% Similarity=0.120 Sum_probs=195.2
Q ss_pred HHHHHHHHHhhhhccccccc-chhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch-hhhHHHHHHhHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNE-PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMII 130 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~i 130 (390)
+..+++..+...+......+ ...++.+++|.+.++. +++.+.+.....+..+++|+++|| +|||++++.+.+++++
T Consensus 16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~ 93 (489)
T PRK10207 16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI 93 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence 44444555555555443333 4456678899887776 799999998888889999999999 9999999999999999
Q ss_pred HHHHHHhhhhHHH-HHHHHHHHhhhccchhhhHHHHHhhcCCCc--cchhHHHHHHHHHHHHHHHHHHhcccccccCchh
Q 016428 131 GASISATTRNLIG-MLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW 207 (390)
Q Consensus 131 ~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~w 207 (390)
+.+.++++++... ++++|+++|+|.|...+...++++|.+|++ +|+++.++++.+.++|..+||.+++++.++.| |
T Consensus 94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-w 172 (489)
T PRK10207 94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-Y 172 (489)
T ss_pred HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-h
Confidence 9999999877554 457999999999999999999999999877 45779999999999999999999999999988 9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCChhhHH--hcCCHHHHHHHHH-------------HHhCCCCchhHH-HH------hh
Q 016428 208 RICFWVSIVPAAILCLAMVFCAESPHWLY--KKGRTAEAEAEFE-------------KLLGGSHVKSSL-AE------LS 265 (390)
Q Consensus 208 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~--~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~------~~ 265 (390)
|+.|++.++..++.++...+.++..+... .++++.|..+... ............ .. ..
T Consensus 173 ~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 252 (489)
T PRK10207 173 SVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTII 252 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999865433333333333332111000 0011111111100 000000000000 00 00
Q ss_pred hcccCCCCccchhhhhhcccchhHHHH--HHHHHHHHHhhchhhHHHhHHHHHhhc--CC--CchHHHHHHHHHHHHHHH
Q 016428 266 KLDRGDDGDIVKFEELLYGRHFRVVFI--GSTLFALQQLSGINAIFYFSSSVFKSA--GL--SSGLANVFVGIANLLGSV 339 (390)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~ 339 (390)
-..++.+. .+.+|+|.+....+ ...+++.........++.|.++..+.. +. .+........+..++..+
T Consensus 253 f~~~~~~~-----~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~p 327 (489)
T PRK10207 253 FFREAFKL-----DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASP 327 (489)
T ss_pred HHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHH
Confidence 00000000 13455554443322 233344444454566777776433321 21 233345555566778888
Q ss_pred HHHHHHhhhCChHH-------HHHHHHHHHHHHHHH
Q 016428 340 VAMVLMDKLGRKAL-------LQWSFFSMAVSMAIQ 368 (390)
Q Consensus 340 ~~g~l~d~~g~~~~-------~~~~~~~~~~~~~~~ 368 (390)
+.+++.||.++|+. +.+|+++.+++++.+
T Consensus 328 l~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~ 363 (489)
T PRK10207 328 ILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTA 363 (489)
T ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 88999999998863 667777777776543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=191.82 Aligned_cols=322 Identities=14% Similarity=0.096 Sum_probs=231.8
Q ss_pred CchhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHh
Q 016428 45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC 124 (390)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~ 124 (390)
.-.+.|.+++...+......-....++...+.++++++.+.++. +|+.++......+..++.+.+.||+|.|++.+.|
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G 117 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAG 117 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHH
Confidence 34455776666666666655555566788999999999988886 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH-HHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc
Q 016428 125 ALPMIIGASISATTRNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (390)
Q Consensus 125 ~~~~~i~~~~~~~~~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 203 (390)
.++.+++.++.+++++++++++. -++.|+|.|..+.....++..+| +|+|+.+.|+...+.++|.++-|.+...+.+.
T Consensus 118 ~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~ 196 (509)
T KOG2504|consen 118 GLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK 196 (509)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence 99999999999999999999886 68999999999999988889888 67799999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhc-ccCChhhHHhcCCHHHHHHHHHH-----------HhCC-C-Cch----hHHHHhh
Q 016428 204 AGWWRICFWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEK-----------LLGG-S-HVK----SSLAELS 265 (390)
Q Consensus 204 ~g~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~-----------~~~~-~-~~~----~~~~~~~ 265 (390)
.| ||+.+++.+.+.+-..+.... -|.+++.... .++..+.... .... + ... ......+
T Consensus 197 ~G-~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (509)
T KOG2504|consen 197 YG-WRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLK 272 (509)
T ss_pred hC-cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhhh
Confidence 99 999998877766655555444 3323221000 0000000000 0000 0 000 0000111
Q ss_pred hcccCCC--Cccc-h---hhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016428 266 KLDRGDD--GDIV-K---FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSV 339 (390)
Q Consensus 266 ~~~~~~~--~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (390)
+.+++.. .... . ..++++++.++...+...+.....+.....++.|.. -.+....+.+.+....++..+++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi 351 (509)
T KOG2504|consen 273 RGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRI 351 (509)
T ss_pred hCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhh
Confidence 1111111 1111 1 257888988888888888888777776667776666 3455556677799999999999999
Q ss_pred HHHHHHhhhC--ChHHHHHHHHHHHHHHHHHHHhccc
Q 016428 340 VAMVLMDKLG--RKALLQWSFFSMAVSMAIQVAASSS 374 (390)
Q Consensus 340 ~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
+.|++.|+.. ++....++.++.+++.+...+..+.
T Consensus 352 ~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~ 388 (509)
T KOG2504|consen 352 ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTY 388 (509)
T ss_pred hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccH
Confidence 9999999987 4445556666666666555555544
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=176.55 Aligned_cols=140 Identities=24% Similarity=0.273 Sum_probs=117.7
Q ss_pred hHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhc
Q 016428 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV 169 (390)
Q Consensus 90 ~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 169 (390)
.|.+.+.|++...+.++.+|.++||+|||+++++|++..++...+.+.+.|+..+.++|++.|+..|... +..++++|.
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~-v~rAiisdV 148 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLS-VIRAIISDV 148 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchH-HHHHHHHhh
Confidence 4899999999999999999999999999999999999999999999999999666677999999999865 556999999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHhcccccc---cCchhHHHHHH----HHHHHHH-HHHHhhcccCCh
Q 016428 170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---IAGWWRICFWV----SIVPAAI-LCLAMVFCAESP 232 (390)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---~~g~wr~~f~~----~~~~~~~-~~~~~~~~~e~p 232 (390)
+++|+|+++++..+..+++|.++||.+|+++.+ ..| +..|.. ..+.... .....+++||+-
T Consensus 149 ~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g--~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 149 VSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG--SYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred cChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc--cCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999999988 333 222222 2222222 233456789883
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=179.10 Aligned_cols=171 Identities=16% Similarity=0.098 Sum_probs=132.7
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
.++|..+..........+... .++...|.+.+++|++.++. +++.++. ..+.+++++.|++.||+|||++++++.+
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~y-~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l 99 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFMY-AFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT 99 (591)
T ss_pred cchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 344555554444444433332 34566788999999987776 7877763 4456778889999999999999999999
Q ss_pred HHHHHHHHHHhh------hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHH-HHHhccc
Q 016428 127 PMIIGASISATT------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG-SLLIGIP 199 (390)
Q Consensus 127 ~~~i~~~~~~~~------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~ 199 (390)
+++++.++++++ ++++.+++.|+++|+|.+...+.....+.+|+| ++||++.|+...+.++|..+ +++..+.
T Consensus 100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 689999999999999999998888899999996 67999999999999999865 5555555
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHh
Q 016428 200 VKEIAGWWRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 200 l~~~~g~wr~~f~~~~~~~~~~~~~~ 225 (390)
+. .+ |++.|++.++..++..++.
T Consensus 179 ~~--~~-~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 179 FS--DN-TSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HH--Hh-HHHHHHHHHHHHHHHHHHH
Confidence 44 23 7888877666666554443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-21 Score=160.69 Aligned_cols=289 Identities=16% Similarity=0.144 Sum_probs=231.4
Q ss_pred hHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHH
Q 016428 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (390)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~ 129 (390)
+..+..+.+..+--.-..+.++|.++.+.+|+|++.+.. |+++++..+...+.+++..++..|+|.++.+..++++.+
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 444444555555555566788999999999999998888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHH
Q 016428 130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (390)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~ 209 (390)
++.++-... +...++.+-.+.|.|.+......+.++.+.||+ +-+..+|+|.+..++|..+++.+...+.++.++||.
T Consensus 89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~ 166 (395)
T COG2807 89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG 166 (395)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence 999999888 888899999999999999999999999999975 579999999999999999999999999888745999
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhH
Q 016428 210 CFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 289 (390)
Q Consensus 210 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
...+-+.++++.++.++. ...| ++. ...+.+..+-.+++++|.-|.
T Consensus 167 aL~~WAl~allAl~~WlP--q~~r-----~~~---------------------------~~~~~~~~~~~~vw~~~~aW~ 212 (395)
T COG2807 167 ALGFWALLALLALLIWLP--QALR-----EQA---------------------------ASIATKLVSVRKVWRSPLAWQ 212 (395)
T ss_pred HHHHHHHHHHHHHHHHhh--hccc-----ccc---------------------------cccccccccccccccCchhHH
Confidence 999988888887776653 2111 000 011111222345888998998
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHH
Q 016428 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQ 368 (390)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~ 368 (390)
+.+.+.+..+..++...|+|.++.+ .+.+..++|.+.....+..++.++....+.+|. ++|+.......++.++.+.+
T Consensus 213 vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~ 291 (395)
T COG2807 213 VTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGL 291 (395)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 8888888887777766776666654 355555677788899999999999999999975 56777778888888888887
Q ss_pred HHhcccCCC
Q 016428 369 VAASSSYIP 377 (390)
Q Consensus 369 ~~~~~~~~~ 377 (390)
.+.+.....
T Consensus 292 ~~~P~~~~~ 300 (395)
T COG2807 292 LLAPGQLPI 300 (395)
T ss_pred HHhhhhHHH
Confidence 776665443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-21 Score=172.93 Aligned_cols=275 Identities=13% Similarity=0.068 Sum_probs=183.9
Q ss_pred HHHHHhhhhccccc-ccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhh-HHHHHHhHHHHHHHHHH
Q 016428 57 TLSSFLFGYHLGVV-NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGASI 134 (390)
Q Consensus 57 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Gr-r~~l~~~~~~~~i~~~~ 134 (390)
+...+..+...... ++..+.+.+++|.+.++. |++.+++.++..++++++|+++||+|| |+++.++.++.+++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 34445555555554 455566778899988777 999999999999999999999999965 88889899988898889
Q ss_pred HHhhhhHHHHHHHHHHHhhhccchhhhHHHHHh--------hcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch
Q 016428 135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT--------EVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 135 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~ 206 (390)
..+.++++.+++.|++.|++.+...+...++.. |......|.+..| .+|..+++.+++.+.....
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~- 158 (418)
T TIGR00889 86 AAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS- 158 (418)
T ss_pred HHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch-
Confidence 999999999999999999987777666554432 2222234455554 3577777777776633333
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccc
Q 016428 207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH 286 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (390)
|+. |++.++..++..+..+++||+|+. +++++.. .++....+.+++++++.
T Consensus 159 ~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~-------------------------~~~~~~~~~~~~~k~~~ 209 (418)
T TIGR00889 159 NIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAKMS-------------------------IKVMLGLDAFILFKNKR 209 (418)
T ss_pred hHH-HHHHHHHHHHHHHHHhcCCCCCCC---ccccccC-------------------------HHHHhhhhHHHHhcCCC
Confidence 554 445444444554555677887531 1100000 00001112445778888
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcC--------CCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHH
Q 016428 287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG--------LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSF 358 (390)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 358 (390)
++...+..++............+.|..+. +.+. ...+.......+..+++.+..+++.||+|+|+.+.++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~ 288 (418)
T TIGR00889 210 MAIFFFFSMLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSL 288 (418)
T ss_pred eeeHHHHHHHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 88777776665554433333444444432 2111 22366777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 016428 359 FSMAVSMAIQVA 370 (390)
Q Consensus 359 ~~~~~~~~~~~~ 370 (390)
++..++..++..
T Consensus 289 ~~~~v~~~l~~~ 300 (418)
T TIGR00889 289 VAWALRFGFFAY 300 (418)
T ss_pred HHHHHHHHHHHH
Confidence 888887666555
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=173.56 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=143.6
Q ss_pred HHHHHHHHhhhhcccccccchhhhh-hc--cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch-hhhHHHHHHhHHHHH
Q 016428 54 LVATLSSFLFGYHLGVVNEPLESIS-LD--LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMI 129 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~ 129 (390)
..+.+..+...+......+.+|.+. ++ +|++..+. +++.+.+.++..++++++|+++|| +|||++++++.++.+
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~ 90 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM 90 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence 3444556666666665666666664 44 78877766 999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCcc---chhHHHHHHHHHHHHHHHHHHhcccccccCch
Q 016428 130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~ 206 (390)
++.++.+++++++.++++|++.|++.|...+...++++|++|+++ |+++.++.+.+.++|..+||.+++.+.+..+
T Consensus 91 ~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g- 169 (475)
T TIGR00924 91 LGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG- 169 (475)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 999999999999999999999999999999999999999998754 8889999999999999999999999998878
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 016428 207 WRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~~~ 225 (390)
||+.|.+.++..++..+..
T Consensus 170 ~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 170 YHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999998775554444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=173.74 Aligned_cols=266 Identities=17% Similarity=0.157 Sum_probs=188.0
Q ss_pred chhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch----hhh-HHHHHHhHHHHHHHHHHHHhhhh------H
Q 016428 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGR-RRAFQLCALPMIIGASISATTRN------L 141 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~----~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~ 141 (390)
..+.+.+++|++..+. |++.++..+..++..++.|+++|| +|| |+.++.+....+++.+++...++ .
T Consensus 22 l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 4456777899988776 999999999999999999999998 677 45677788888888888776654 4
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHHhhcC-CCccchhHHHHHHHHHHHHHHHHHHhccccc-------ccCchhHHHHHH
Q 016428 142 IGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-------EIAGWWRICFWV 213 (390)
Q Consensus 142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-------~~~g~wr~~f~~ 213 (390)
..+++.+++.+++.+...+...++..|.. ++++|++..++...+..+|..+++.+.+.+. +..+ ||+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i 178 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHH
Confidence 56677888889888887777778888887 4688999999988888888766655544333 2335 9999988
Q ss_pred HHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHH
Q 016428 214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (390)
Q Consensus 214 ~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (390)
.+++.++..+.. +..+|+++ +.+ ++ ++++.+....+++++++|.++...+
T Consensus 179 ~~~l~~~~~~~~~~~~~e~~~----~~~-~~------------------------~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKERYS----EIP-KN------------------------IEKKLSLKQIFKALFKNDQLLILCL 229 (437)
T ss_pred HHHHHHHHHHHHHcCCEecCC----CCC-cc------------------------cccCCCHHHHHHHHhCCHHHHHHHH
Confidence 887777665544 45666531 000 00 0000111234567788888888777
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHh
Q 016428 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
..++............++|.+...+ .....+.......++.+++.++.+++.||+|+|+.+.++..+.+++.+.+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 230 AYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred HHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 6666665554444444445443333 22223445566788899999999999999999999988888888777666554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=171.77 Aligned_cols=289 Identities=18% Similarity=0.163 Sum_probs=211.4
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI 134 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~ 134 (390)
.++.+.++..++..+.....+.+..+. +.+....+++..+..+...+.++++|.++||+.||++++.+.++..+..+.
T Consensus 14 ~lw~a~~iS~lG~~~~~va~~wlv~~l--t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~ 91 (524)
T PF05977_consen 14 RLWIAQLISNLGDWMQTVALAWLVTQL--TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALL 91 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 444555555666655556666666554 345555699999999999999999999999999999999999887766555
Q ss_pred HHhh-----hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHH
Q 016428 135 SATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (390)
Q Consensus 135 ~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~ 209 (390)
.++. .+.+.+++.-++.|++.+...|...+++.|..|+++...+.++.+...++..++||.++|.+....| -.+
T Consensus 92 L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~ 170 (524)
T PF05977_consen 92 LAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AAA 170 (524)
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHH
Confidence 4432 4788899999999999999999999999999999999999999999999999999999999998877 578
Q ss_pred HHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhH
Q 016428 210 CFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 289 (390)
Q Consensus 210 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (390)
.|.+.++.-++.++.....+++++ ++...++ +.. +.-...++-+.+++..+.
T Consensus 171 ~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e--~~~-----------------------~~l~~G~ryv~~~~~l~~ 222 (524)
T PF05977_consen 171 AFLINALSFLISILALLRWKPPPP---PSSLPRE--RFF-----------------------SALREGLRYVRSSPPLRS 222 (524)
T ss_pred HHHHHHHHHHHHHHHHHHcccccc---ccccchh--hhh-----------------------hhHHHHHHHHhcchHHHH
Confidence 888876655544444333332211 0000000 000 001112333445566666
Q ss_pred HHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 016428 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369 (390)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 369 (390)
.+...+++.+........+|.+..+.++......|++....+++.++|.++.+++.+|+++++++..+.++.+++++.+.
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la 302 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA 302 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh
Confidence 65555555544444455677777776666666678899999999999999999999999998888888888888877777
Q ss_pred Hhccc
Q 016428 370 AASSS 374 (390)
Q Consensus 370 ~~~~~ 374 (390)
+.++.
T Consensus 303 l~~~~ 307 (524)
T PF05977_consen 303 LSPSF 307 (524)
T ss_pred cchHH
Confidence 66543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-19 Score=161.36 Aligned_cols=275 Identities=12% Similarity=-0.001 Sum_probs=190.2
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHH--HHHhHHHHHHHHHhHHH-hhchhhhHHHHHHhHHH-H
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLV--VSMCLGGAFIGSTLSGW-IADGVGRRRAFQLCALP-M 128 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~s~~~~~~~i~~~~~g~-l~d~~Grr~~l~~~~~~-~ 128 (390)
...+...++..+.......+.+|.+.+|.|.+.++. |++ .+...+...+.+++++. .+||+|||+.+++...+ .
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 445666778888888899999999999999988877 886 35667777778888844 78999999987665533 2
Q ss_pred HHHHHHHH---hhhh-HHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC
Q 016428 129 IIGASISA---TTRN-LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204 (390)
Q Consensus 129 ~i~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 204 (390)
++.....+ ...+ ...++..-++.++..+...+..-.+..|..++++++...+....+..+|..+|+...+++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~ 160 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF 160 (390)
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222 2222 3344445555666677777777778888888888888888888888999999998888888888
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcc
Q 016428 205 GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG 284 (390)
Q Consensus 205 g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (390)
+ ||..|++.++..++..+..++++|+++. +.+.+ +++..+.++++++
T Consensus 161 g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~-----------------------------~~~~~~~~~~l~~ 207 (390)
T TIGR02718 161 G-QRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAP-----------------------------LARRASLFRFFRR 207 (390)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccc-----------------------------hhhHHHHHHHHcC
Confidence 8 9999999887777665555555443210 00000 0011235677888
Q ss_pred cchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHH-HHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 016428 285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 363 (390)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 363 (390)
|.++......++........+.+.+.|..+ .+.+..+.+......+ ...+++.++.|++.||+|+|+.+..+..+.++
T Consensus 208 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 208 PLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS 286 (390)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888877777667666655656666666654 3444444455555444 45667889999999999999988877666533
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=149.22 Aligned_cols=288 Identities=16% Similarity=0.111 Sum_probs=208.6
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHH
Q 016428 44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL 123 (390)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~ 123 (390)
+..+++|..++++++..+.+++.+..+++.......-++ +.+.. -|+.-+|++.+....+++-|+.|++|-|..+++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll 114 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL 114 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence 456778999999999999999999888888888888888 44444 599999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhh------hhHH--HHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHH
Q 016428 124 CALPMIIGASISATT------RNLI--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL 195 (390)
Q Consensus 124 ~~~~~~i~~~~~~~~------~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 195 (390)
+..+.++|..+-..+ +.++ ....+..+.+.+.-........+..-|||+++|..+..+-.+++.+|..++.+
T Consensus 115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 999999999987765 3345 67788999999888888777788888999999999999999999999999999
Q ss_pred hcccccccC----c-hhHH--HHHHHHHHHH-HHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhc
Q 016428 196 IGIPVKEIA----G-WWRI--CFWVSIVPAA-ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL 267 (390)
Q Consensus 196 ~~~~l~~~~----g-~wr~--~f~~~~~~~~-~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (390)
+...+..+. + .|.. .|+....... ......+..++.|+.........
T Consensus 195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~------------------------- 249 (480)
T KOG2563|consen 195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA------------------------- 249 (480)
T ss_pred ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh-------------------------
Confidence 998888655 1 1544 2332222222 22222233444332100000000
Q ss_pred ccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHH---hhcCCCchHHHHHHHHHHHHHHHHHHHH
Q 016428 268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF---KSAGLSSGLANVFVGIANLLGSVVAMVL 344 (390)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l 344 (390)
..+.+-..+.++.++++++....+++........+ ++..+...+ ++.+..+|.......+++++++.++|.+
T Consensus 250 -~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~----l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii 324 (480)
T KOG2563|consen 250 -LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNS----LSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII 324 (480)
T ss_pred -hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHH----HHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence 00122345678899999998887776665555333 444443222 4445668899999999999999999999
Q ss_pred HhhhCC-hHHHHHHHHHHHHH
Q 016428 345 MDKLGR-KALLQWSFFSMAVS 364 (390)
Q Consensus 345 ~d~~g~-~~~~~~~~~~~~~~ 364 (390)
.||.+. |...++......++
T Consensus 325 ~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 325 ADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 999876 44444444444444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=160.99 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=129.5
Q ss_pred HHHHHHHhhhhcccccccch-hhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch-hhhHHHHHHhHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGA 132 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~i~~ 132 (390)
.+++..+...+........+ .++.+++|++.++. +++.+.+........+++|+++|| +|||++++.+.++.+++.
T Consensus 25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~ 102 (500)
T PRK09584 25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY 102 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 34444444444443334444 44568899987776 677777776666667899999999 599999999999999999
Q ss_pred HHHHhhh-hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCcc--chhHHHHHHHHHHHHHHHHHHhcccccccCchhHH
Q 016428 133 SISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (390)
Q Consensus 133 ~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~ 209 (390)
.++++++ +...++++|+++|++.|...+...+++.|++|+++ |..+.++++.+.++|..++|.+++++.+..| ||+
T Consensus 103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~ 181 (500)
T PRK09584 103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSV 181 (500)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHH
Confidence 9998874 56677788999999999988888899999998653 4567888999999999999999999998888 999
Q ss_pred HHHHHHHHHHHH
Q 016428 210 CFWVSIVPAAIL 221 (390)
Q Consensus 210 ~f~~~~~~~~~~ 221 (390)
.|.+.++..++.
T Consensus 182 ~F~i~~i~~~i~ 193 (500)
T PRK09584 182 AFALSVVGMLIT 193 (500)
T ss_pred HHHHHHHHHHHH
Confidence 999876544443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-17 Score=148.07 Aligned_cols=294 Identities=15% Similarity=0.152 Sum_probs=191.4
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhc----hhhhHHHHHHh-HHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQLC-ALPMI 129 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d----~~Grr~~l~~~-~~~~~ 129 (390)
.++...+-..+......+.++.+.+++|.+.... +++..+..+...+.+++.|+++| |+|||+.++.+ .....
T Consensus 8 ~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~ 85 (477)
T TIGR01301 8 RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence 3333344445555566667777888999877666 89999999999999999999999 59999998875 66666
Q ss_pred HHHHHHHhhhhHH-----------------HHHHHHHHHhhhccchhhhHHHHHhhcCCCccc--hhHHHHHHHHHHHHH
Q 016428 130 IGASISATTRNLI-----------------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGL 190 (390)
Q Consensus 130 i~~~~~~~~~~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~ 190 (390)
++.++.+++++.. .++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.
T Consensus 86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ 165 (477)
T TIGR01301 86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN 165 (477)
T ss_pred HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence 6767777776643 222333344457777778888999999998865 579999999999999
Q ss_pred HHHHHhccccc--ccC------------chhHHHHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCC
Q 016428 191 MGSLLIGIPVK--EIA------------GWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGS 255 (390)
Q Consensus 191 ~~~~~~~~~l~--~~~------------g~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 255 (390)
++|+.+++... +.. .+.|+.|++.++..++..+.. +..+|.|... +++.++ ++.+
T Consensus 166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~~~~------ 235 (477)
T TIGR01301 166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--SEAA------ 235 (477)
T ss_pred HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--hhcc------
Confidence 99999987641 110 126889999887777766555 5578865311 100000 0000
Q ss_pred CchhHHHHhhhcccCCCCccchhhhhhc-----ccchhHHHHHHHHHHHHHhhchhhHHHhHH-HHHhhcCC-----Cch
Q 016428 256 HVKSSLAELSKLDRGDDGDIVKFEELLY-----GRHFRVVFIGSTLFALQQLSGINAIFYFSS-SVFKSAGL-----SSG 324 (390)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~ 324 (390)
+.+++.....++++++ .+.++.+.+..++.++..+....+...|.. ++++.... +.+
T Consensus 236 ------------~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~g 303 (477)
T TIGR01301 236 ------------PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDG 303 (477)
T ss_pred ------------cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHH
Confidence 0000000111222222 356778888888888777666555555543 44442211 112
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHHHHHHhc
Q 016428 325 -----LANVFVGIANLLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAAS 372 (390)
Q Consensus 325 -----~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
......++...+.+++..++.+|+|+ |....++.++.++++....+..
T Consensus 304 vr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~ 357 (477)
T TIGR01301 304 VRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVT 357 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 13445556666777788889999985 6666788888888877766544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=158.99 Aligned_cols=182 Identities=15% Similarity=0.062 Sum_probs=136.7
Q ss_pred cccchhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHH---HHhhhhHHHHH
Q 016428 70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGML 145 (390)
Q Consensus 70 ~~~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~l~ 145 (390)
....+|.+. +++|.+..+. ++..+...++..++.++.|+++||+|||+++..+.++..++... ...+++...++
T Consensus 269 ~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIF 346 (490)
T ss_pred HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 334556654 5678776554 67778888999999999999999999999988887654433322 22345677788
Q ss_pred HHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHh
Q 016428 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~ 225 (390)
++|++.|++.+........++.|.+|++.|++++++.+....++..++|.+.+++.+..++|+..+++..+.+++.++..
T Consensus 347 ~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (490)
T PRK10642 347 AGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 89999998877777777788899999999999999754445555677888888777654447777776666666666666
Q ss_pred hcccCChhhHHhc-----CCHHHHHHHHHHHhC
Q 016428 226 VFCAESPHWLYKK-----GRTAEAEAEFEKLLG 253 (390)
Q Consensus 226 ~~~~e~p~~~~~~-----~~~~~~~~~~~~~~~ 253 (390)
+++||+|++..++ ++.+|+++.++++..
T Consensus 427 ~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 427 VTMKETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence 7789999987755 788888888887763
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=145.04 Aligned_cols=164 Identities=19% Similarity=0.167 Sum_probs=125.6
Q ss_pred HHHHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-hhHHHHHHhHHHHHHHHH
Q 016428 56 ATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~i~~~ 133 (390)
++...+...+....+...+|. +.+++|++..+. +.+.+.+.....++++++|+++||+ |||++++++.++.+++.+
T Consensus 14 l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~l 91 (493)
T PRK15462 14 VVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHV 91 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH
Confidence 333334444444334444454 456788887776 8899999999999999999999999 999999999999999988
Q ss_pred HHHhhh-hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCc--cchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHH
Q 016428 134 ISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (390)
Q Consensus 134 ~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~ 210 (390)
+.+..+ +...+.++..+.++|.|...+...++++|.+|++ +|..+.++.+...++|..++|.+.+++.+..| ||+.
T Consensus 92 ll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~~ 170 (493)
T PRK15462 92 VLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAMG 170 (493)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHHH
Confidence 776543 2233444444555666777677778999999875 79999999999999999999999999998888 9999
Q ss_pred HHHHHHHHHHHH
Q 016428 211 FWVSIVPAAILC 222 (390)
Q Consensus 211 f~~~~~~~~~~~ 222 (390)
|.+.++..++.+
T Consensus 171 F~iaaigm~l~l 182 (493)
T PRK15462 171 FGLAAVGMIAGL 182 (493)
T ss_pred HHHHHHHHHHHH
Confidence 988665444333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-18 Score=140.72 Aligned_cols=285 Identities=17% Similarity=0.099 Sum_probs=204.7
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch-hhhHHHHHHhH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCA 125 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~ 125 (390)
.++...+...|+..|-.++..........++..|.+++.++. .++.++|..-..+-++++|++.|| +|-|..-++-+
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~ 117 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILC 117 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHH
Confidence 344555666666677777888878888888999999888777 799999999999999999999996 68888777777
Q ss_pred HHHHHHHHHHH---hhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 016428 126 LPMIIGASISA---TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 126 ~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 202 (390)
.+..+|.++.+ ..+.+|.+..+|++.|+|.-...++-..|..-|+..|+.+.++|+..+...+|+.+...+.+++.+
T Consensus 118 ~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 118 IFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 77778877765 568999999999999999988888889999999999999999999999999998887777777665
Q ss_pred cCch-----hHHHHHH-------HHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccC
Q 016428 203 IAGW-----WRICFWV-------SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG 270 (390)
Q Consensus 203 ~~g~-----wr~~f~~-------~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (390)
..+. =+....+ .+...+++....-+. .+++++.+++ ++.
T Consensus 198 ~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~------------D~rAerilh~-----------------e~g 248 (459)
T KOG4686|consen 198 TMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLS------------DDRAERILHL-----------------EEG 248 (459)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHhh-----------------hcC
Confidence 4331 0111100 111111111111111 0111111111 111
Q ss_pred CCCccchhhhhh-cccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhC
Q 016428 271 DDGDIVKFEELL-YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG 349 (390)
Q Consensus 271 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 349 (390)
...+..+..+.. ..+.+|.+.+.++++....+-.+..-+.+.++-++.+..+++.+.........+..++.|.++||.|
T Consensus 249 ~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G 328 (459)
T KOG4686|consen 249 FLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYG 328 (459)
T ss_pred cccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhc
Confidence 111111111111 1378999999999998888888888888999989999888888888888888999999999999999
Q ss_pred ChHHHHHHHHHHH
Q 016428 350 RKALLQWSFFSMA 362 (390)
Q Consensus 350 ~~~~~~~~~~~~~ 362 (390)
++.+.+.+..+..
T Consensus 329 ~n~~wv~~a~~~t 341 (459)
T KOG4686|consen 329 FNLWWVASACILT 341 (459)
T ss_pred ceehhHHHHHHHH
Confidence 9877665444333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=153.86 Aligned_cols=267 Identities=16% Similarity=0.178 Sum_probs=202.7
Q ss_pred chhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhc----hhhhHHHH-HHhHHHHHHHHHHHHhh-h-------
Q 016428 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAF-QLCALPMIIGASISATT-R------- 139 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d----~~Grr~~l-~~~~~~~~i~~~~~~~~-~------- 139 (390)
..+.+.+.+|+++... |.+..+.-+-.++..|+.|.++| |+|||+.. +++....+++.+++... +
T Consensus 24 ~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~ 101 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA 101 (428)
T ss_pred HHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence 4556677778887666 89999999999999999999999 89976555 46778888877777655 4
Q ss_pred hHHHHHHHHHHHhhhccchhhhHHHHHhhcCC-CccchhHHHHHHHHHHHHHHHHHHhcccccccCc------hhHHHHH
Q 016428 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------WWRICFW 212 (390)
Q Consensus 140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g------~wr~~f~ 212 (390)
....+.+..++..++.........++..|..+ +++|.+..+.-..+..+|..+...+.+.+.+..+ +|++...
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~ 181 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL 181 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence 23445667777788888888888899999997 5789999999998888888766666665553222 3899888
Q ss_pred HHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHH
Q 016428 213 VSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (390)
Q Consensus 213 ~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (390)
+.+++.++..+.. +..+|+++ +.+ .++++.+-...++++++||+++...
T Consensus 182 v~~iv~~v~~~i~~~~~ke~~~------~~~------------------------~~~~~~~~~~~~~~~~~nr~~~~l~ 231 (428)
T PF13347_consen 182 VLAIVGLVFFLITFFFVKERSV------EVT------------------------EQEKKISLRDSLRSLFRNRPFRILL 231 (428)
T ss_pred HHHHHHHHHhhhhhheeeeccc------ccc------------------------ccccccccccchhhhcccchHHHHH
Confidence 8777777665554 44566211 000 0112223344578889999999999
Q ss_pred HHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHh
Q 016428 292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
...++............++|.+...+... ..+.......++.+++.++.++++||+|+|+....+..+.+++.+++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence 99888888887777788888888777663 34556667888999999999999999999999999999999988887777
Q ss_pred c
Q 016428 372 S 372 (390)
Q Consensus 372 ~ 372 (390)
.
T Consensus 311 ~ 311 (428)
T PF13347_consen 311 G 311 (428)
T ss_pred H
Confidence 6
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-17 Score=149.56 Aligned_cols=297 Identities=14% Similarity=0.066 Sum_probs=194.5
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhh-----hHHHHHHhHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLCALP 127 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~G-----rr~~l~~~~~~ 127 (390)
+.++...++..+..........+.+.+++|++.++. +...+...+...+-.+ +|+++||++ ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 445555667777774444555667777899998887 7889999999988655 999999998 78888888777
Q ss_pred HH-HHHHHHHhhhhHHHHH-HHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHH---HHHHHHHHHHHHHHhcccccc
Q 016428 128 MI-IGASISATTRNLIGML-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 128 ~~-i~~~~~~~~~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l~~ 202 (390)
.+ ++....+..++..... +..++.+++.+...++.-++..|..+ +++....+. ......+|.++++.+++.+.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 4433444445544444 47899999999999999999999998 555444333 334445899999999999998
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhh
Q 016428 203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL 282 (390)
Q Consensus 203 ~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (390)
..+ ||..|++.+...++..+..++++|++.....+.++++.... ... ..... +..++...+..+.+
T Consensus 184 ~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~-~~~-----~~~~~-------~~~~~~~~~l~~~l 249 (468)
T TIGR00788 184 KTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM-ALL-----TLGVL-------ANVKVQILGLRGAI 249 (468)
T ss_pred hcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh-hhh-----hhhHH-------HHHHHHHHHHHHHH
Confidence 888 99999988777776655567778863100000000000000 000 00000 00000011244456
Q ss_pred cccchhHHHHHHHH-HHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q 016428 283 YGRHFRVVFIGSTL-FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM 361 (390)
Q Consensus 283 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 361 (390)
++|..+..++..++ +... ........++.+...+.++...|......+++.+++....+++.+|++.|+++.++.++.
T Consensus 250 ~~~~i~~~l~fifl~~~~~-~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~ 328 (468)
T TIGR00788 250 QLLEIAKPLIFIFLSYANL-PGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLY 328 (468)
T ss_pred hcHHHHHHHHHHHHHHhhc-CCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 67777765555444 2221 111111112334556777777888888899999999999999999999999999988888
Q ss_pred HHHHHHH
Q 016428 362 AVSMAIQ 368 (390)
Q Consensus 362 ~~~~~~~ 368 (390)
+++....
T Consensus 329 ~~~~~~~ 335 (468)
T TIGR00788 329 TLSSLFD 335 (468)
T ss_pred HHHHhCc
Confidence 8877554
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-17 Score=148.28 Aligned_cols=258 Identities=15% Similarity=0.167 Sum_probs=168.6
Q ss_pred chhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch----hhh-HHHHHHhHHHHHHHHHHHHhhhh------H
Q 016428 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGR-RRAFQLCALPMIIGASISATTRN------L 141 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~----~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~ 141 (390)
....+.+++|++.... |.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....++ .
T Consensus 32 l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 32 LAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 4556778899988776 999999999999999999999998 777 45566677777777665544432 4
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHHhhcC-CCccchhHHHHHHHHHHHHHHHHHHhcccccc-------cCchhHHHHHH
Q 016428 142 IGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-------IAGWWRICFWV 213 (390)
Q Consensus 142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-------~~g~wr~~f~~ 213 (390)
..+++..++.+.+.........++.+|+. ++++|.+..++......+|..+++.+...+.. ..+ |+..+.+
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~i 188 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHH
Confidence 56666677777766666666778899988 56889998888887777776666554332221 224 8888777
Q ss_pred HHHHHHHHHHHhh-cccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHH
Q 016428 214 SIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (390)
Q Consensus 214 ~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (390)
.+++.++..+..+ ..+|.++. + + +++.+...+.+++++||.++..+.
T Consensus 189 ~~ii~~v~~~~~~~~~~e~~~~-----~-~--------------------------~~~~~~~~~~~~~~~n~~~~~l~~ 236 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKERYTP-----E-V--------------------------DNSSSVWKDLKLLLGNSQWRIMFI 236 (444)
T ss_pred HHHHHHHHHHHHhCCeEEecCC-----C-C--------------------------cCCCCHHHHHHHHhCCchHHHHHH
Confidence 7666655544433 34443110 0 0 001112334667888999888877
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH
Q 016428 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 366 (390)
..++.............+|.....+. ....+.......+..+++.++.+++.||+|+|+....+..+..++..
T Consensus 237 ~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 237 FNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 66655544433333334443333222 11122344455677788889999999999999998887766655443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-15 Score=134.08 Aligned_cols=279 Identities=16% Similarity=0.178 Sum_probs=194.6
Q ss_pred HHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhh-hHHHHHHhHHHHHHHHHHHHh
Q 016428 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISAT 137 (390)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~G-rr~~l~~~~~~~~i~~~~~~~ 137 (390)
.+++..+..+...|.++.+.++.|.+..|. |.+.++..+...++++++|.++||.+ +|+++.++.++.++.......
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667788899999999988877 99999999999999999999999986 678888888888887777788
Q ss_pred hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHh-cccccc---cCchhHHHHHH
Q 016428 138 TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI-GIPVKE---IAGWWRICFWV 213 (390)
Q Consensus 138 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~l~~---~~g~wr~~f~~ 213 (390)
.++++.+++.-++..+......|..-++..+...+ +++-.|-.-...++|.+++... +..+.. ..+ ..+.+++
T Consensus 88 ~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~-~~~~~~i 164 (400)
T PF03825_consen 88 SSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISG-TSLIFYI 164 (400)
T ss_pred hccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhcccc-ccHHHHH
Confidence 88999888888888888888888888887777642 2333333444444444444222 111121 112 2345566
Q ss_pred HHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHH
Q 016428 214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG 293 (390)
Q Consensus 214 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (390)
.+...++.....+.+|+.|+ +++.++ ..++....+..+++++|++...++.
T Consensus 165 ~~~~~~ll~~~~l~lp~~~~----~~~~~~-------------------------~~~~~~~~~~~~llk~~~~~~Fll~ 215 (400)
T PF03825_consen 165 AAILSLLLAGFALFLPKTPP----KRSAKE-------------------------SVKKLLGLDALKLLKNPRFLVFLLA 215 (400)
T ss_pred HHHHHHHHHHHHHhCCCCcc----ccccCC-------------------------CcccccchHHHHHhcCccHHHHHHH
Confidence 55555555555566787752 111000 0111112234578999999888888
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHh
Q 016428 294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
.++........+++.+.|+++.-+......+.......+..++.-...+++.+|+|.++++.++.+..++=..++...
T Consensus 216 ~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 216 AFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF 293 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 888877777767777777766533444445666677788899999999999999999999999998888877776666
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=135.41 Aligned_cols=186 Identities=21% Similarity=0.238 Sum_probs=145.9
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhh-HHHHHHhH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCA 125 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Gr-r~~l~~~~ 125 (390)
+..|+.+.+..+..++......++.+..-++.++++.+.+....||+.++..++.++++++.|+.+.|.|. |+.++.+.
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 44577788888889999999988888877777776666555556999999999999999999999999986 88899999
Q ss_pred HHHHHHHHHH-Hhh---h-hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccc
Q 016428 126 LPMIIGASIS-ATT---R-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (390)
Q Consensus 126 ~~~~i~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 200 (390)
++..+++++. ++. + .-+.++++|++.|+|.|... ..-.|+++-...++|.++++....+..+|.++||.++..+
T Consensus 110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 9999999988 433 3 57888999999999988764 6669999988899999999999998888888888877655
Q ss_pred cccC--c----------hhHHHHHHHHHHHHHHHHHh-hcccCChh
Q 016428 201 KEIA--G----------WWRICFWVSIVPAAILCLAM-VFCAESPH 233 (390)
Q Consensus 201 ~~~~--g----------~wr~~f~~~~~~~~~~~~~~-~~~~e~p~ 233 (390)
.... | .+..+-|+.++..++.++.. +++.|.++
T Consensus 189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 4322 1 02334456666666655444 55777654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=146.02 Aligned_cols=281 Identities=11% Similarity=0.063 Sum_probs=174.1
Q ss_pred HHHHhhhhcccccccc-hhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhc----hhhh-HHHHHHhHHHHHHH
Q 016428 58 LSSFLFGYHLGVVNEP-LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGR-RRAFQLCALPMIIG 131 (390)
Q Consensus 58 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d----~~Gr-r~~l~~~~~~~~i~ 131 (390)
++.+...+....+.+. ...+.+.+|++.... |.+..+.-+..++..|+.|+++| |+|| |+.++.+....+++
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~ 90 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVV 90 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHH
Confidence 3333334444444443 344566678887666 99999999999999999999999 6698 66667788777777
Q ss_pred HHHHHhhh------hHHHHHHHHHHHhhhccchhhhHHHHHhhcC-CCccchhHHHHHHHHHHHHHHHHHHhcccc----
Q 016428 132 ASISATTR------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPV---- 200 (390)
Q Consensus 132 ~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---- 200 (390)
..+.-..+ .+..+++..++.+++.........++..|.. ++++|.+..++-.....+|..+.+.+...+
T Consensus 91 ~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~ 170 (473)
T PRK10429 91 LFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV 170 (473)
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65554332 1345556667778888877788889999998 589999999886666666644444333221
Q ss_pred c---ccCchhHHHHHHHHHHHHHHHHHhh-cccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccc
Q 016428 201 K---EIAGWWRICFWVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV 276 (390)
Q Consensus 201 ~---~~~g~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (390)
. +..+ |+....+.++..++..+..+ ..+|.++. ...+. .++++.+...
T Consensus 171 g~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~~~-----------------------~~~~~~~~~~ 222 (473)
T PRK10429 171 GGGDRGFG-FQMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQVS-----------------------AEGSHLTLKD 222 (473)
T ss_pred CCCchhhh-HHHHHHHHHHHHHHHHHHHHcCceecCCc----ccccc-----------------------ccccCCCHHH
Confidence 1 1123 77776666666555444433 35654210 00000 0001111223
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHH
Q 016428 277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356 (390)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 356 (390)
.++.+++||.++..+...++............++|.....+. ....+.......++.+++.++.+++.||+|+|+.+.+
T Consensus 223 ~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~ 301 (473)
T PRK10429 223 IVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG 301 (473)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 345567888888777766666554444333334443332221 1122334555668888999999999999999999888
Q ss_pred HHHHHHHHHHHHH
Q 016428 357 SFFSMAVSMAIQV 369 (390)
Q Consensus 357 ~~~~~~~~~~~~~ 369 (390)
+..+..++.+.+.
T Consensus 302 ~~~~~~~~~~~~~ 314 (473)
T PRK10429 302 ASIFPVLSCGVLL 314 (473)
T ss_pred HHHHHHHHHHHHH
Confidence 8776665555443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=121.31 Aligned_cols=136 Identities=22% Similarity=0.384 Sum_probs=121.1
Q ss_pred HHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCc
Q 016428 94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF 173 (390)
Q Consensus 94 ~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 173 (390)
.+.+.++..++.++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 45567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhc-ccC
Q 016428 174 VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF-CAE 230 (390)
Q Consensus 174 ~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~-~~e 230 (390)
+|++..++.+....+|..+++.+++.+.+..+ |++.+++.+...++..+..++ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999988877 999998877776666555443 444
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-15 Score=131.72 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=150.8
Q ss_pred HhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC-----------
Q 016428 136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA----------- 204 (390)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~----------- 204 (390)
+...+|+.++++-++.|.|.+...+..+.++++..|++++.+.+++.+..+++|.+++|++++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999999777321
Q ss_pred ----chhHHHHHHHHHHHHHHHHHhhc--ccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchh
Q 016428 205 ----GWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF 278 (390)
Q Consensus 205 ----g~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (390)
.+|+++|++.+...++..+.+.+ +||.++ +.++ + ..++ +..+.
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~--~---------------------~~~~--~~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA--R---------------------VSSG--DTTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc--c---------------------cccc--cccch
Confidence 24999999665554444444333 344311 0000 0 0000 00112
Q ss_pred hhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHH--HhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHH
Q 016428 279 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV--FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356 (390)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 356 (390)
++.+++++++...+..+++.....+...+.+.|+.+. ++.+....+........+.++|+++.+++.||+++|+.+.+
T Consensus 134 ~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~ 213 (310)
T TIGR01272 134 TSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF 213 (310)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 2456677777777777777777778788888888653 34455556778888899999999999999999999988888
Q ss_pred HHHHHHHHHHHHHH
Q 016428 357 SFFSMAVSMAIQVA 370 (390)
Q Consensus 357 ~~~~~~~~~~~~~~ 370 (390)
+..+..++.++...
T Consensus 214 ~~~l~~~~~~l~~~ 227 (310)
T TIGR01272 214 NAFLAVLLSIGAAL 227 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777776654443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=144.66 Aligned_cols=139 Identities=14% Similarity=0.021 Sum_probs=121.6
Q ss_pred HHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCC
Q 016428 92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171 (390)
Q Consensus 92 ~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 171 (390)
+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+...+...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556678889999999999999999999999999999999999999988888888999999888888899999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcccCCh
Q 016428 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP 232 (390)
Q Consensus 172 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p 232 (390)
.++|++++|+.++...+|.+++|.+++.+.+.. ...+|++.++..++..++.+++||+.
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999998877643 46677777777777766677789873
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-15 Score=137.80 Aligned_cols=263 Identities=15% Similarity=0.161 Sum_probs=161.5
Q ss_pred hhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh----hhHHHH-HHhHHHHHHHHHHH-Hh----hhh--H
Q 016428 74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV----GRRRAF-QLCALPMIIGASIS-AT----TRN--L 141 (390)
Q Consensus 74 ~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~----Grr~~l-~~~~~~~~i~~~~~-~~----~~~--~ 141 (390)
.+++.+.+|++..+. |.+.+...+..++..++.|+++||. |||+.+ +.+.+...+..++. .. +++ .
T Consensus 32 ~~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (448)
T PRK09848 32 LSYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV 109 (448)
T ss_pred HHHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence 346677779877666 9999999999999999999999996 777654 55555444444332 21 112 2
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHHhhcCC-CccchhHHHHHHHH-----HHHHHHHHHHhcccccccCc-hhHHHHHHH
Q 016428 142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIA-----TCLGLMGSLLIGIPVKEIAG-WWRICFWVS 214 (390)
Q Consensus 142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~G~~~~~~~~~~l~~~~g-~wr~~f~~~ 214 (390)
...++..++.+++.+...+...++..|..+ +++|.+..++-..+ ..++..++|.+++....... .|.....+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~ 189 (448)
T PRK09848 110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL 189 (448)
T ss_pred HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 334445667788788777777777777664 46788876665543 23455566666543322111 121111222
Q ss_pred HHHHHHHHHH-hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHH
Q 016428 215 IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG 293 (390)
Q Consensus 215 ~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (390)
+++.++..+. ....+|+++ ++ .++......++++++||.++...+.
T Consensus 190 ~v~~~~~~~~~~~~~~e~~~----~~-----------------------------~~~~~~~~~~~~l~~n~~f~~~~~~ 236 (448)
T PRK09848 190 AIAGMVLYFICFKSTRENVV----RI-----------------------------VAQPSLKISLQTLKRNRPLFMLCIG 236 (448)
T ss_pred HHHHHHHHHHHHcCcEeccC----CC-----------------------------ccCCCHHHHHHHHhCCchHHHHHHH
Confidence 2222222222 223454421 00 0001112236678899999888877
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHh
Q 016428 294 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
.++............++|.++.++......+.......++.+++.++.+++.||+|+|+.+.++.++..++.+++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 237 ALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred HHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 777776666655566667666555433222333334456678889999999999999999999988888887766553
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-17 Score=155.10 Aligned_cols=304 Identities=17% Similarity=0.180 Sum_probs=3.0
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI 134 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~ 134 (390)
.+++..+............++.+.++|+++.++. |++.+.|-++..+..++..++.+|..|-+.+-.|.+++++++++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l 84 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL 84 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence 3444445556677778888999999999999888 99999999999999999999999988888889999999999888
Q ss_pred HHhhh--------------------------------------------------hHHHHHHHHHHHhhhccchhhhHHH
Q 016428 135 SATTR--------------------------------------------------NLIGMLLGRFVVGTGMGLGPTVAAL 164 (390)
Q Consensus 135 ~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~ 164 (390)
+++-+ -+..++++.++.|+|....++.+.+
T Consensus 85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t 164 (539)
T PF03137_consen 85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT 164 (539)
T ss_dssp -------------------------------------------------------------------SSS----------
T ss_pred HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence 76410 0356778999999999999999999
Q ss_pred HHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC---------------------chhHHHHHHHHHHHHHHHH
Q 016428 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------------------GWWRICFWVSIVPAAILCL 223 (390)
Q Consensus 165 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~---------------------g~wr~~f~~~~~~~~~~~~ 223 (390)
|+-|..++++-+.++|+..+...+|..+|.++++.+.+.+ |-|-.-|++.+...++..+
T Consensus 165 YiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai 244 (539)
T PF03137_consen 165 YIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI 244 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998776421 0133344455555555666
Q ss_pred HhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhh---hcccCCCCccchhhhhhcccchhHHHHHHHHHHHH
Q 016428 224 AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELS---KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300 (390)
Q Consensus 224 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (390)
..+++|+.-+... +..++.+...++. .+...+...+.+ ...+..+.-....+++++|+.+....++.......
T Consensus 245 pl~~FPk~lp~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~ 320 (539)
T PF03137_consen 245 PLFFFPKKLPGTS--ERQEEKESSERKE--EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFI 320 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCccCCCcc--cccchhhhhhcch--hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 6666765422110 0000000000000 000000000000 00111233345577899999999888888888888
Q ss_pred HhhchhhHHHhHHHHHhhcCCCchHHHHH-HHHHHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHH
Q 016428 301 QLSGINAIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKLG--RKALLQWSFFSMAVS 364 (390)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~ 364 (390)
..+..++.|-|++..++.+...++.+... ...+.++|.+++|++.+|++ .|..+....+...++
T Consensus 321 ~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 321 VSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 88888899999998888877766664433 33467789999999999975 344444444433333
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=140.37 Aligned_cols=302 Identities=15% Similarity=0.181 Sum_probs=221.1
Q ss_pred HHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHH
Q 016428 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (390)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~ 131 (390)
.+.++++..+..++....+...+..+.+.|+++.++. |++.+.|-++..+...+..++.-|..|-+.+-+|.++++++
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 4555666677777777888889999999999998887 99999999999999999999999999999999999999999
Q ss_pred HHHHHhh--------------------h---------------------------h----HH-HHHHHHHHHhhhccchh
Q 016428 132 ASISATT--------------------R---------------------------N----LI-GMLLGRFVVGTGMGLGP 159 (390)
Q Consensus 132 ~~~~~~~--------------------~---------------------------~----~~-~l~~~r~l~G~~~g~~~ 159 (390)
++++++- + + ++ .++++.++.|+|....+
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 9998861 0 0 22 55678999999999999
Q ss_pred hhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC------------------chhHHHHHHHHHHHHHH
Q 016428 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------------------GWWRICFWVSIVPAAIL 221 (390)
Q Consensus 160 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~------------------g~wr~~f~~~~~~~~~~ 221 (390)
+.+.+|+-|...+++-+..+|+..+...+|.++|.++|+++.+.+ |-|..-|++.+.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998765422 11556667777777777
Q ss_pred HHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhccc---CCCCccchhhhhhcccchhHHHHHHHHHH
Q 016428 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDR---GDDGDIVKFEELLYGRHFRVVFIGSTLFA 298 (390)
Q Consensus 222 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (390)
.+.++++|.+.+. ..++ ...+..+.....+. ..+.... .-+.-+...+++++|+.+....+...+..
T Consensus 336 a~p~f~fPk~lp~---~~~~-~~~~~~~~~k~~~~------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~ 405 (735)
T KOG3626|consen 336 AVPLFFFPKELPK---SQKR-KRARDLHVLKTESG------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIES 405 (735)
T ss_pred HHHHHhCcccCcc---cccc-chhhhhcccccccc------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 7778888876431 1111 00000000000000 0000000 00122345678899999999999999988
Q ss_pred HHHhhchhhHHHhHHHHHhhcCCCchHHHHHHH-HHHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHH
Q 016428 299 LQQLSGINAIFYFSSSVFKSAGLSSGLANVFVG-IANLLGSVVAMVLMDKLG--RKALLQWSFFSMAVSM 365 (390)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~ 365 (390)
....+..+++|-|++..++.+...+..+....+ .+..+|.+++|++.+|+. .|....+..+...+.+
T Consensus 406 ~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l 475 (735)
T KOG3626|consen 406 LAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL 475 (735)
T ss_pred HHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence 888888889999999888877766666554443 455678889999999875 3555444444444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-14 Score=130.96 Aligned_cols=254 Identities=16% Similarity=0.129 Sum_probs=166.3
Q ss_pred hhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch----hhhHHH-HHHhHHHHHHHHHHHHhhhh------HH
Q 016428 74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRA-FQLCALPMIIGASISATTRN------LI 142 (390)
Q Consensus 74 ~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~----~Grr~~-l~~~~~~~~i~~~~~~~~~~------~~ 142 (390)
...+.+..|++.... |.+..+.-+--++..|+.|.++|| +|||+. ++++....+++.+++-..++ ..
T Consensus 33 ~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~ 110 (460)
T PRK11462 33 MFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI 110 (460)
T ss_pred HHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 445667778877665 888888888889999999999996 788654 55576777777666544442 34
Q ss_pred HHHHHHHHHhhhccchhhhHHHHHhhcCC-CccchhHHHHHHHHHHHHHHHHHHhcccccccCc------hhHHHHHHHH
Q 016428 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------WWRICFWVSI 215 (390)
Q Consensus 143 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g------~wr~~f~~~~ 215 (390)
.+++.-++..++.......-.++..|..+ +++|++..++...+..+|..+++.+...+.+..| .|+....+.+
T Consensus 111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ 190 (460)
T PRK11462 111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS 190 (460)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 55666677788888887788889999887 7899999999999888887777665443332211 2777666666
Q ss_pred HHHHHHHHHhhc-ccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHH
Q 016428 216 VPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS 294 (390)
Q Consensus 216 ~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (390)
++.+++.+..+. .+|.++. + + ++.+.....+.+++||.++......
T Consensus 191 ii~~i~~~i~~~~~kE~~~~-----~-~---------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~ 237 (460)
T PRK11462 191 VVAFMMLAFCFFTTKERVEA-----P-P---------------------------TTTSMREDLRDIWQNDQWRIVGLLT 237 (460)
T ss_pred HHHHHHHHHHHhcceeccCC-----C-c---------------------------cCCCHHHHHHHHhCChHHHHHHHHH
Confidence 655555444333 4443210 0 0 0001122356677888887776655
Q ss_pred HHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 016428 295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 363 (390)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 363 (390)
++.............+|.....+... ..+.......++.+++.++++++.||+++|+....+..+..+
T Consensus 238 ~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 238 IFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred HHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 55555444444444555554443221 223456667788899999999999999999887655444444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-15 Score=135.05 Aligned_cols=157 Identities=24% Similarity=0.195 Sum_probs=131.2
Q ss_pred cchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016428 72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV 151 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 151 (390)
...|.+.++.|.+..+. +++.+.+.++..++.++.|+++||+|||+.+..+.....++.++..+.++.+.+.+..++.
T Consensus 241 ~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (406)
T PRK11551 241 NWLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318 (406)
T ss_pred HHHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34677778888877766 8999999999999999999999999999999888777777777777788888888888889
Q ss_pred hhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcccC
Q 016428 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230 (390)
Q Consensus 152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e 230 (390)
|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+++.+.+..++|...++......++..+..+++.+
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988888888889999999999999999999999999999999999999887655777777666665555555444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=131.16 Aligned_cols=286 Identities=19% Similarity=0.211 Sum_probs=173.3
Q ss_pred HHHHhhhhcccccccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHH--HHHH-
Q 016428 58 LSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI--IGAS- 133 (390)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~--i~~~- 133 (390)
...+...+..+...|..+...++ .|++.++. |.+.++..+...+.+++.|.++||+|.||-++..+.+.. .+..
T Consensus 14 ~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff 91 (412)
T PF01306_consen 14 LFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFF 91 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444455566666777766654 89988887 999999999999999999999999997665554433222 2222
Q ss_pred HHHhh----hhH-HHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhH
Q 016428 134 ISATT----RNL-IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (390)
Q Consensus 134 ~~~~~----~~~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr 208 (390)
...+. .|. ...+++-+..|+......|+.-+++.++. ++.+.=.|-.-+..++|.+++..++|.+.+..+ +
T Consensus 92 ~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p--~ 167 (412)
T PF01306_consen 92 IYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINP--N 167 (412)
T ss_dssp HHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCc--c
Confidence 22222 232 23344445555555555566656555543 333445566667888888888889888887543 6
Q ss_pred HHHHHHHHHHHHHHHHhhcc-cCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccch
Q 016428 209 ICFWVSIVPAAILCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF 287 (390)
Q Consensus 209 ~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
..||+....+++..++.++. |+.++....++.. ..++++....+..+++++|++
T Consensus 168 ~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~l~k~~~f 222 (412)
T PF01306_consen 168 IIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL-------------------------GAKKDKVSLKDVLSLFKMRNF 222 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS-------------------------SS------HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc-------------------------ccCCCCCcHHHHHHHhcchhH
Confidence 77887666555554444433 3332210000000 000111112235678889999
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCC---CchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q 016428 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS 364 (390)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 364 (390)
|...+................+.|....++..+. -.|.+.....+..++...+..++.+|+|.|+.++++..++.+=
T Consensus 223 w~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iR 302 (412)
T PF01306_consen 223 WFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIR 302 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence 9887766666555555555566666654433222 2456777888899999999999999999999999998888887
Q ss_pred HHHHHHhccc
Q 016428 365 MAIQVAASSS 374 (390)
Q Consensus 365 ~~~~~~~~~~ 374 (390)
..+..+.++.
T Consensus 303 i~~~~~~~~~ 312 (412)
T PF01306_consen 303 IIGSGFATNP 312 (412)
T ss_dssp HHHHHT--SH
T ss_pred HHHHhhhcch
Confidence 7666665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=132.14 Aligned_cols=154 Identities=14% Similarity=0.194 Sum_probs=125.3
Q ss_pred chhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016428 73 PLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV 151 (390)
Q Consensus 73 ~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 151 (390)
..|. +.+++|.+..+. +++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.
T Consensus 238 ~~p~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 315 (393)
T PRK15011 238 NMPLFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN 315 (393)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4554 456788876665 7888877777888999999999999999988877766665555555677888888899999
Q ss_pred hhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcccC
Q 016428 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230 (390)
Q Consensus 152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e 230 (390)
+++.|...+....+..|.+|+ +|+++.++++....+|..+++.+++.+.+..+ |+..|++.++..++..+..++.||
T Consensus 316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888887777777888999875 59999999999999999999999999998877 999999888777777776666654
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=134.48 Aligned_cols=147 Identities=18% Similarity=0.098 Sum_probs=124.4
Q ss_pred cchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhH--HHHHHHHH
Q 016428 72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRF 149 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~ 149 (390)
...+.+.++++.++++. +++.+.+.++..++.++.|+++||+|||+.+..+.++..++.+...+.++. ..+++..+
T Consensus 226 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA 303 (377)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 34455667788766555 888999999999999999999999999999999999988888877776643 33456678
Q ss_pred HHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHH
Q 016428 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL 221 (390)
Q Consensus 150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~ 221 (390)
+.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|.+.++..++.
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHh
Confidence 88988888887888899999999999999999999999999999999999998888 999998877666554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=137.99 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=127.2
Q ss_pred cchhhhhhccccCCcc------hhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh----hH
Q 016428 72 EPLESISLDLGFNGNT------LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR----NL 141 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~------~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~----~~ 141 (390)
...+.+.++.|.+.+. ...+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 3445555666644311 2238888999999999999999999999999999999999988877666632 24
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHH-HHHHHHHHHHHHhcccccccCc-----hhHHHHHHHH
Q 016428 142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG-----WWRICFWVSI 215 (390)
Q Consensus 142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~g-----~wr~~f~~~~ 215 (390)
+.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ...++|..+||+++|.+.+..+ +|++.|.+.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 667788999999999888888899999999999999999997 6788999999999999987632 2999998877
Q ss_pred HHHHHHHHHh-hcccCC
Q 016428 216 VPAAILCLAM-VFCAES 231 (390)
Q Consensus 216 ~~~~~~~~~~-~~~~e~ 231 (390)
+..++..++. ++++|+
T Consensus 389 ~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 7766655444 556665
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=138.41 Aligned_cols=141 Identities=12% Similarity=0.017 Sum_probs=121.2
Q ss_pred hHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhc
Q 016428 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV 169 (390)
Q Consensus 90 ~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 169 (390)
.|++.++..++..++.++.|+++||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+....++.|.
T Consensus 264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 343 (420)
T PRK09528 264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN 343 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999989999999999999999999999888877788899999
Q ss_pred CCCccchhHHHH-HHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHh-hcccCC
Q 016428 170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFCAES 231 (390)
Q Consensus 170 ~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~-~~~~e~ 231 (390)
+|++.|+...+. ++....+|..+++.+.+.+.+..| ||..|.+.++..++..+.. ..++++
T Consensus 344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999887665 667788999999999999999888 9999998776666554443 334443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=131.90 Aligned_cols=154 Identities=16% Similarity=0.076 Sum_probs=129.0
Q ss_pred chhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 016428 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 152 (390)
.++.+.++.|. ++. ++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|
T Consensus 238 ~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 313 (399)
T PRK05122 238 FITLYYAARGW--DGA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHHHccc--ccc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555555 233 56677888899999999999999999999999999988888888888888888888999999
Q ss_pred hhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcccCC
Q 016428 153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231 (390)
Q Consensus 153 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~ 231 (390)
++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..| |++.|++.+...++..+..++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998888877888899999999999999999999999999999999988888 8999998877777766665555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=128.77 Aligned_cols=268 Identities=19% Similarity=0.170 Sum_probs=195.5
Q ss_pred hhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch----hhhH-HHHHHhHHHHHHHHHHHHhhhh------HHH
Q 016428 75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRR-RAFQLCALPMIIGASISATTRN------LIG 143 (390)
Q Consensus 75 ~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~~ 143 (390)
-.+.+.+|++.... |.+..+-=+--++..|+.|.++|| +||+ +-++.+.+..++...++-.+++ ...
T Consensus 37 ~fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y 114 (467)
T COG2211 37 FFYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY 114 (467)
T ss_pred HHHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence 34566778877665 777777777789999999999995 7764 5566677888888888877763 455
Q ss_pred HHHHHHHHhhhccchhhhHHHHHhhcCC-CccchhHHHHHHHHHHHHHHHHHHhccccccc-------CchhHHHHHHHH
Q 016428 144 MLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-------AGWWRICFWVSI 215 (390)
Q Consensus 144 l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-------~g~wr~~f~~~~ 215 (390)
.++...+.+++.......-.++.+|+.+ ++||.+..++-.....+|.++...+.+.+... .| |+..-.+.+
T Consensus 115 a~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g-~~~~~~~~~ 193 (467)
T COG2211 115 ALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG-YQGTALVLG 193 (467)
T ss_pred HHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh-HHHHHHHHH
Confidence 6677888899988888888889999885 78999999999998888866555444433321 23 676666666
Q ss_pred HHHHHHHHHhhc-ccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHH
Q 016428 216 VPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS 294 (390)
Q Consensus 216 ~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (390)
++.++..+..++ ..|.+.. ....+ +..+++...+...+++||.+...++..
T Consensus 194 vi~~i~~l~~~~~v~ER~~~---~~~~~-------------------------~~~~~~~~~~~~~~~~Nrp~~~~l~~~ 245 (467)
T COG2211 194 VIGVILLLFCFFNVKERVVE---TQPTK-------------------------TGVKLKLKDSFLLIFKNRPLLLLLLMN 245 (467)
T ss_pred HHHHHHHHHHHHHhhcccCc---cccCc-------------------------ccccccHHHHHHHHHccchHHHHHHHH
Confidence 666665555544 4444320 00000 001111222345688999999888877
Q ss_pred HHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhcc
Q 016428 295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS 373 (390)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 373 (390)
++.............+|.+..++...............+.+++.++..++.+|+|+|++..++.++.+++.+++.+.+.
T Consensus 246 l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~ 324 (467)
T COG2211 246 LLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA 324 (467)
T ss_pred HHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7777777776777788888777777766777777788888888999999999999999999999999999998888773
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-13 Score=125.07 Aligned_cols=251 Identities=17% Similarity=0.162 Sum_probs=172.9
Q ss_pred hHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHH-hHHHHHHHHHHHHhh-h-hHHHHHHHHHHHhhhccchhhhHHHHH
Q 016428 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIGASISATT-R-NLIGMLLGRFVVGTGMGLGPTVAALYV 166 (390)
Q Consensus 90 ~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~-~~~~~~i~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~~~i 166 (390)
+++..++..+..++..|+.|.++|+-|+||.++. ...+..+++....+. + +++...+.-++.-++.+.......+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888999999999999999987666555 444455566666653 3 444444555666677777788888999
Q ss_pred hhcCCCccc--------------------------hhHHHHHHHHHHHHHHHHHHhcccccccCc-------hhHHHHHH
Q 016428 167 TEVSPPFVR--------------------------GTYGAFIQIATCLGLMGSLLIGIPVKEIAG-------WWRICFWV 213 (390)
Q Consensus 167 ~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g-------~wr~~f~~ 213 (390)
.|..+++++ ++..+.-.....+|.++..++.-.+....+ .-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999998888 899888888888887776665544332211 14777777
Q ss_pred HHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHH
Q 016428 214 SIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (390)
Q Consensus 214 ~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (390)
.++.-++..+.. +++||.|+....+..........+++ ...++++.+.|+....++
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l-----------------------~~t~k~~~~~~~~~~fLi 288 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL-----------------------WRTFKEIRKLRQLFLFLI 288 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH-----------------------HHHHHHHHhChHHHHHHH
Confidence 777766655544 56777764211111111111111111 123455566677777888
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHH
Q 016428 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK--ALLQWSFFSMAV 363 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~ 363 (390)
+.+++.-...+.......|..+.++.+..+.........+.+++|+++.+++.||+|.| +++.++.++..+
T Consensus 289 a~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~ 361 (477)
T PF11700_consen 289 AYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII 361 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 88877777777777777888888888777777788889999999999999999999988 776666555533
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=120.98 Aligned_cols=312 Identities=16% Similarity=0.142 Sum_probs=196.8
Q ss_pred HHHHHHHHHhhhhccccc-ccchhhhhhccc----cCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-hhHHHHHHhHH
Q 016428 53 VLVATLSSFLFGYHLGVV-NEPLESISLDLG----FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCAL 126 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~ 126 (390)
+..+...-+...+...-+ ....-++..+++ ++++++ .-+.+.|..---+...++|+++||+ |+|+.++.|.+
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 334444455554443322 233444555555 877776 4566777666667899999999995 99999999999
Q ss_pred HHHHHHHHHHhhh--hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCc--cchhHHHHHHHHHHHHHHHHHHhcccccc
Q 016428 127 PMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 127 ~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 202 (390)
+..+|.++.+.++ ....++++-++.++|.|..=+....++.|.+|++ +|-...++++++.++|++++|++.+++.+
T Consensus 101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence 9999999999984 7899999999999999999999999999999853 47788999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhcccCC---------hhhHHhcCCHHHHHHHHHHHhCC--------CCchhHHH---
Q 016428 203 IAGWWRICFWVSIVPAAILCLAMVFCAES---------PHWLYKKGRTAEAEAEFEKLLGG--------SHVKSSLA--- 262 (390)
Q Consensus 203 ~~g~wr~~f~~~~~~~~~~~~~~~~~~e~---------p~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--- 262 (390)
..| |+..|...++-..+.++..+..+.. |.....+................ +.......
T Consensus 181 ~~g-~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (498)
T COG3104 181 NYG-WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVIS 259 (498)
T ss_pred hhC-HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999998877666665554443321 11111111110000000000000 00000000
Q ss_pred ----H--hhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhc----CCCchHHHHHHHH
Q 016428 263 ----E--LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA----GLSSGLANVFVGI 332 (390)
Q Consensus 263 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 332 (390)
. ..+.-..++.. ...+++ .....+++...+++...-...+.+..|..+..+.. ....+.......+
T Consensus 260 i~~~~~~~~~~~~~~~~~-~er~r~---~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~ 335 (498)
T COG3104 260 ILIAIIYFAEAFRSPKVF-DERRRL---LAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPF 335 (498)
T ss_pred HHHHHHHHHHHhccCccH-HHHHHH---HHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHH
Confidence 0 00000000000 111111 22334555566666666666677777777655443 2456667888888
Q ss_pred HHHHHHHHHHHHHhhhCCh-------HHHHHHHHHHHHHHHHHHHh
Q 016428 333 ANLLGSVVAMVLMDKLGRK-------ALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 333 ~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~~~~~~~ 371 (390)
.-++..++..++..|.+++ .-+-++..+++.+++++...
T Consensus 336 ~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~ 381 (498)
T COG3104 336 FIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLA 381 (498)
T ss_pred HHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777774332 12445667777776666554
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=128.09 Aligned_cols=164 Identities=23% Similarity=0.353 Sum_probs=142.7
Q ss_pred Hhhhhcccccccchhhhhhcc-ccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHH-HHHHhHHHHHHHHHHHHhh
Q 016428 61 FLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR-AFQLCALPMIIGASISATT 138 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~-~l~~~~~~~~i~~~~~~~~ 138 (390)
+.............|.+.++. |.+..+. ++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555666666664 7666655 89999999999999999999999999999 9999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHH
Q 016428 139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA 218 (390)
Q Consensus 139 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~ 218 (390)
++.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.+.+.++..
T Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~ 341 (352)
T cd06174 263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALA 341 (352)
T ss_pred ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877 899999988888
Q ss_pred HHHHHHhhc
Q 016428 219 AILCLAMVF 227 (390)
Q Consensus 219 ~~~~~~~~~ 227 (390)
++..+..++
T Consensus 342 ~i~~i~~~~ 350 (352)
T cd06174 342 LLAALLLLL 350 (352)
T ss_pred HHHHHHhee
Confidence 777666544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=123.21 Aligned_cols=225 Identities=15% Similarity=0.084 Sum_probs=150.5
Q ss_pred chhhHHHHHHHHHhccCCCCCccchhhhhhhccCCCc--ccC----CCCCchhhhHHHHHHHHHHHhhhhcccccccchh
Q 016428 2 WGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTE--VEN----TNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLE 75 (390)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (390)
++|++||++..+..+..++++.+......+.+.++.+ ... -...+..++...+.+.+......-+...+...-.
T Consensus 215 k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst 294 (485)
T KOG0569|consen 215 KGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYST 294 (485)
T ss_pred cCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHH
Confidence 5788899988888876654433322211111111111 111 0112223333333333333333334445566677
Q ss_pred hhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh---hHH------HHHH
Q 016428 76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR---NLI------GMLL 146 (390)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~---~~~------~l~~ 146 (390)
.+.++-|++.++. -++.....+...++.+++..+.||+|||+.++.+..+..+..++..... +.. ..++
T Consensus 295 ~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~ 372 (485)
T KOG0569|consen 295 SIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIA 372 (485)
T ss_pred HHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8889999988877 5888888899999999999999999999999999999998888776542 211 1233
Q ss_pred HHHHHh--hhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHH
Q 016428 147 GRFVVG--TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 147 ~r~l~G--~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~ 224 (390)
+.++.. ++.|. .|...-+.+|.+|++.|+.++++......+..++-...-..+.+..|. ..|++..+++++..+.
T Consensus 373 ~~~~~~~~f~~G~-gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~ 449 (485)
T KOG0569|consen 373 AIFLFIISFAIGP-GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIY 449 (485)
T ss_pred HHHHHHHhhhcCC-CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHH
Confidence 333333 33333 467778899999999999999999999999988877777777777663 6677777777766555
Q ss_pred h-hcccCC
Q 016428 225 M-VFCAES 231 (390)
Q Consensus 225 ~-~~~~e~ 231 (390)
. .++||+
T Consensus 450 ~~~~lPET 457 (485)
T KOG0569|consen 450 LYRYLPET 457 (485)
T ss_pred HHHhCccc
Confidence 4 569999
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-12 Score=111.99 Aligned_cols=283 Identities=19% Similarity=0.176 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
++.-+.+-.++...+.+ .+|..-.+.+++|.+++++ +.+....+....+..++.|.++||+|||+.-+...++.
T Consensus 36 qr~yl~vY~La~~aDWL----QGpY~Y~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily 109 (354)
T PF05631_consen 36 QRKYLLVYLLAMAADWL----QGPYLYALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILY 109 (354)
T ss_pred HHHHHHHHHHHHHHHHh----hcchhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 33334444444343333 3455555667899988887 88888889999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHH-hhcCC----CccchhHHHHHH-HHHHHHHHHHHHhcccccc
Q 016428 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV-TEVSP----PFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i-~~~~~----~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~ 202 (390)
+++++ +-..+|+..++++|++-|++.+..+...-++. .|.-. ++..+.-.+... ..+++-.+++.+++-.+.+
T Consensus 110 ~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~ 188 (354)
T PF05631_consen 110 SLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD 188 (354)
T ss_pred HHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 88885 56678999999999999999999988887664 45432 222222222222 2223334444555555555
Q ss_pred cCch-hHHHHHHHHHHHHHHHHHhh-cccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhh
Q 016428 203 IAGW-WRICFWVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEE 280 (390)
Q Consensus 203 ~~g~-wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (390)
..+. -..+|....+..++..+++. ..+|.+.. ..+..+..+. -...++.
T Consensus 189 ~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~---~~~~~~~~~~--------------------------~~~a~~~ 239 (354)
T PF05631_consen 189 WFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD---TSSSSSLSGS--------------------------FREAWRA 239 (354)
T ss_pred HhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC---cccccchHHH--------------------------HHHHHHH
Confidence 4431 36788887777666655553 35665320 0000010000 1112445
Q ss_pred hhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHh-hcCCCchHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHH
Q 016428 281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLSSGLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSF 358 (390)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~ 358 (390)
+.++|+.+.+-+...++-... +.++..+.|.+.. .....-|+++....++.++|+.+..++..+ ......+...+
T Consensus 240 i~~d~ril~LG~~qslFE~sm---y~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~ 316 (354)
T PF05631_consen 240 ILSDPRILLLGLIQSLFEGSM---YLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVF 316 (354)
T ss_pred HHcCchhHHHHHHHHHHHHHH---HHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 666676665555544444433 3333444444332 234557888998999999999888766554 33344444555
Q ss_pred HHHHHHHHHHHH
Q 016428 359 FSMAVSMAIQVA 370 (390)
Q Consensus 359 ~~~~~~~~~~~~ 370 (390)
.+.++++.+-.+
T Consensus 317 ~~aa~~l~~pv~ 328 (354)
T PF05631_consen 317 AVAAVSLAIPVV 328 (354)
T ss_pred HHHHHHHHHHHH
Confidence 555555544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-14 Score=130.50 Aligned_cols=163 Identities=10% Similarity=0.053 Sum_probs=128.2
Q ss_pred HHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch--hhhHHHHH--HhHHHHHHHHHH
Q 016428 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG--VGRRRAFQ--LCALPMIIGASI 134 (390)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~--~Grr~~l~--~~~~~~~i~~~~ 134 (390)
..++...........+|.+.+++|.+..+. +++.+...++..+++++.|+++|| +++|+... .+.++.+++.++
T Consensus 249 ~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll 326 (455)
T TIGR00892 249 GNVIMFLGFFAPIIFLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL 326 (455)
T ss_pred HHHHHHHHccchHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 333333443344445677777888877666 899999999999999999999997 34443333 344444555566
Q ss_pred HHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHH
Q 016428 135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214 (390)
Q Consensus 135 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~ 214 (390)
+...++++.+++.+++.|++.+...+...+++.|.+|++++++..++++....+|..+||.+++.+.+..+.|++.|++.
T Consensus 327 ~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~ 406 (455)
T TIGR00892 327 CALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYAS 406 (455)
T ss_pred HHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHh
Confidence 67788999999999999999999999989999999999999999999999999999999999999998764489999887
Q ss_pred HHHHHHHHH
Q 016428 215 IVPAAILCL 223 (390)
Q Consensus 215 ~~~~~~~~~ 223 (390)
++..++..+
T Consensus 407 ~~~~li~~~ 415 (455)
T TIGR00892 407 GSIVVSAGL 415 (455)
T ss_pred hHHHHHHHH
Confidence 776655443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-14 Score=127.57 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=127.4
Q ss_pred cchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016428 72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV 151 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 151 (390)
...|.+.++.+.+ +. ++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.
T Consensus 237 ~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (392)
T PRK12382 237 TFVSLYFASKGWA--MA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT 312 (392)
T ss_pred HHHHHHHHhcCCc--hh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3445555565553 23 5667778888899999999999999999999999999889888888888888888899999
Q ss_pred hhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhh
Q 016428 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226 (390)
Q Consensus 152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~ 226 (390)
|++.+...+.....+.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|.+.++..++..+..+
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence 999998888888888999999999999999999999999999999999999888 99999988777766655544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.8e-14 Score=126.04 Aligned_cols=159 Identities=12% Similarity=-0.003 Sum_probs=133.6
Q ss_pred HhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhh
Q 016428 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN 140 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~ 140 (390)
++............|.+.+|.|.+.++. |++.+...++..++.++.+++.||+|+|+.+.++.+..++..+..++++|
T Consensus 215 ~l~~~~~~~~~~~~~~~l~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~ 292 (382)
T TIGR00902 215 CLIQGAHAAYYGFSAIYWQAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEA 292 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 3333334334445666667888877766 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHH-HHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHH
Q 016428 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219 (390)
Q Consensus 141 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~ 219 (390)
.+.+++.++++|+..+...+....++.+. |+++|+++.++++ ...++|..+++.++|.+.+..| + ..|++.+...+
T Consensus 293 ~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~ 369 (382)
T TIGR00902 293 FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHH
Confidence 99999999999999999999999999998 9999999999986 5788999999999999999887 5 55666666555
Q ss_pred HHHHH
Q 016428 220 ILCLA 224 (390)
Q Consensus 220 ~~~~~ 224 (390)
+..++
T Consensus 370 ~~~~~ 374 (382)
T TIGR00902 370 AAFFL 374 (382)
T ss_pred HHHHH
Confidence 55444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=125.37 Aligned_cols=149 Identities=19% Similarity=0.286 Sum_probs=124.0
Q ss_pred hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcc
Q 016428 77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG 156 (390)
Q Consensus 77 ~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 156 (390)
+.+++|.++.+. +++.+.......++.++.|++.||+|||+++..+.++..+......+.++.+.+++.+++.|++.+
T Consensus 226 ~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (375)
T TIGR00899 226 IIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG 303 (375)
T ss_pred HHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788876665 787777777778888999999999999999988877766666666677888888889999999998
Q ss_pred chhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhccc
Q 016428 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCA 229 (390)
Q Consensus 157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~ 229 (390)
...+....++.|..|+ +|+++.++++....+|..++|.+++.+.+..| |+..|++.++..++..+...+++
T Consensus 304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 304 ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheec
Confidence 8888888889998876 56799999999999999999999999998888 89999988887777766665554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-13 Score=115.75 Aligned_cols=268 Identities=18% Similarity=0.127 Sum_probs=186.3
Q ss_pred hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhh-----hHHHHHH-hHHHHHHHHHHHHhh-----h------
Q 016428 77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQL-CALPMIIGASISATT-----R------ 139 (390)
Q Consensus 77 ~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~G-----rr~~l~~-~~~~~~i~~~~~~~~-----~------ 139 (390)
+..|+++...-. +.+.+...+.. ...+.+|+.||+.+ ||..+++ |......+..+..++ .
T Consensus 6 MIvEL~vpA~lv--~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~ 82 (403)
T PF03209_consen 6 MIVELGVPAWLV--ALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS 82 (403)
T ss_pred HHHHhccHHHHH--HHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 566777654433 66677765544 46899999999999 7766555 566666655555432 2
Q ss_pred --hHH---HHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHH
Q 016428 140 --NLI---GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214 (390)
Q Consensus 140 --~~~---~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~ 214 (390)
.+. ...++-.+.|+|.+...+...++++|..|+++|+++.++......+|.+++..+.+.+.+....-|..-.+.
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~ 162 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ 162 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 222 333457788999999999999999999999999999999999999999999999888777655334433333
Q ss_pred HHH--HHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHH
Q 016428 215 IVP--AAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (390)
Q Consensus 215 ~~~--~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (390)
... .++..++..+-.|.+..... ...++++..-...++++..+++.++.+.
T Consensus 163 ~~a~i~~~l~~ia~wg~E~r~~~~~---------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~ 215 (403)
T PF03209_consen 163 GVALIALLLNLIALWGQEPRRSRRA---------------------------AAAERPRPPFREAWRQVWASPQARRFFV 215 (403)
T ss_pred HHHHHHHHHHHHHHHhcccCCcccc---------------------------cCCCCCCccHHHHHHHHHhCCChhHHHH
Confidence 222 22222223333333210000 0011222333455777888898888888
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHh-hhCChHHHHHHHHHHHHHHHHHHHh
Q 016428 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
..++.....+.-...+-.|--++++.+..++..+....+.+..++....+++.. |.++++...+++....+++.++...
T Consensus 216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666667777888888888777888889999999999999998776 6778888888999888888777665
Q ss_pred ccc
Q 016428 372 SSS 374 (390)
Q Consensus 372 ~~~ 374 (390)
...
T Consensus 296 ~~~ 298 (403)
T PF03209_consen 296 GPL 298 (403)
T ss_pred Hhc
Confidence 443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=129.02 Aligned_cols=176 Identities=15% Similarity=0.015 Sum_probs=129.6
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~ 132 (390)
+....+..+.............|.+.+++|.+..+. ++......++..++.++.|+++||+|||+.+..+.++.+++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 363 (481)
T TIGR00879 286 FLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL 363 (481)
T ss_pred HHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 333444444444444445556788888889887655 788888999999999999999999999999999988888877
Q ss_pred HHHHh-----hh------hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc
Q 016428 133 SISAT-----TR------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (390)
Q Consensus 133 ~~~~~-----~~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 201 (390)
++.++ .+ +...+....++.+.......+....++.|.+|+++|+++.++.+....+|.++++.+.+.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76662 11 23333333333333333334566677899999999999999999999999999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHh-hcccCC
Q 016428 202 EIAGWWRICFWVSIVPAAILCLAM-VFCAES 231 (390)
Q Consensus 202 ~~~g~wr~~f~~~~~~~~~~~~~~-~~~~e~ 231 (390)
+..+ |++.|++.++.+++..+.. ++.||+
T Consensus 444 ~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 444 ESIG-VGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred HhcC-ccceehhHHHHHHHHHHHHheecccC
Confidence 8877 8999988777776665555 445665
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-13 Score=124.99 Aligned_cols=160 Identities=19% Similarity=0.068 Sum_probs=115.2
Q ss_pred ccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh--hH-H-HH
Q 016428 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NL-I-GM 144 (390)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~--~~-~-~l 144 (390)
......|.+.++.|.+.... ++......++..++.++.|+++||+|||++++.+.++.+++.++.+... +. . ..
T Consensus 289 ~~~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~ 366 (479)
T PRK10077 289 VVLYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 366 (479)
T ss_pred HHHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence 33445688888888876655 5666677788899999999999999999999999999888887765432 21 1 22
Q ss_pred HHHHHHHhhhccc-hhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcc------cccccCchhHHHHHHHHHH
Q 016428 145 LLGRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI------PVKEIAGWWRICFWVSIVP 217 (390)
Q Consensus 145 ~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~------~l~~~~g~wr~~f~~~~~~ 217 (390)
..+-++.+.+.+. ..+....++.|.+|+++|++++++.+....+|.++++.+.+ ++.+..+ |++.|++.++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~ 445 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCM 445 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHH
Confidence 2333444444333 23667789999999999999999999988888887755544 3445556 78888887766
Q ss_pred HHHHHHHh-hcccCC
Q 016428 218 AAILCLAM-VFCAES 231 (390)
Q Consensus 218 ~~~~~~~~-~~~~e~ 231 (390)
+++..+.. ++.||+
T Consensus 446 ~~~~~~~~~~~~~e~ 460 (479)
T PRK10077 446 GVLAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHHHhccccC
Confidence 66665554 446776
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.8e-13 Score=125.67 Aligned_cols=163 Identities=12% Similarity=0.021 Sum_probs=108.0
Q ss_pred cccchhhhhhccccCCcchh---------hH-HHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh
Q 016428 70 VNEPLESISLDLGFNGNTLA---------EG-LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR 139 (390)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~---------~g-~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~ 139 (390)
.....|.+.++.|.+.++.. .. ....+..++..++.++.++++||+|||+.++.+..+.+++..+.++..
T Consensus 307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~ 386 (502)
T TIGR00887 307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY 386 (502)
T ss_pred cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 34457777788887654220 00 122334456667888999999999999999988888777766655432
Q ss_pred h----HHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc---------h
Q 016428 140 N----LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG---------W 206 (390)
Q Consensus 140 ~----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g---------~ 206 (390)
+ ...+...-+...++..+..+....+.+|.+|.+.|+++.++.+....+|.++++.+.+.+.+..+ +
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (502)
T TIGR00887 387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW 466 (502)
T ss_pred HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence 1 11111111112222222344566778999999999999999999999999999999988876421 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCh
Q 016428 207 WRICFWVSIVPAAILCLAMVFCAESP 232 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~~~~~~~e~p 232 (390)
+...|++.++..++..+..+++||++
T Consensus 467 ~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 467 MGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred chHHHHHHHHHHHHHHHHheEeccCC
Confidence 35566776666666655556789873
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=127.62 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~ 131 (390)
+..+++..++...........+|. +.+++|.+..+. ++..+.+.++..++.+++|+++||+|||+.++....+..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 333444444444443334555665 456789887776 88889999999999999999999999998876655444433
Q ss_pred HH--HHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHH-HHHHHHHhcccccc------
Q 016428 132 AS--ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKE------ 202 (390)
Q Consensus 132 ~~--~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~------ 202 (390)
.. .....++...+.+.+++.|++.............|.+|+++|+++.|+.+....+ |..++|.+.|.+.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~ 417 (467)
T PRK09556 338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT 417 (467)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence 32 2233456667778888888654443333345677999999999999999888776 77899999999888
Q ss_pred ------cCchhHHHHHHHHHHHHHHHHHhh
Q 016428 203 ------IAGWWRICFWVSIVPAAILCLAMV 226 (390)
Q Consensus 203 ------~~g~wr~~f~~~~~~~~~~~~~~~ 226 (390)
..+ |+..|++..+..++..+..+
T Consensus 418 ~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 418 PIFGYTLTG-WAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred ccccccccC-hHHHHHHHHHHHHHHHHHHH
Confidence 456 99999887666666554444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.5e-14 Score=127.11 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=117.6
Q ss_pred HHhhhhcccccccchhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH--HHHH
Q 016428 60 SFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA--SISA 136 (390)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~--~~~~ 136 (390)
.+.............|.+. +++|.+.++. ++..+...++..++.++.|+++||+|||+.+..+..+..+.. +...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 305 (394)
T TIGR00883 228 VIATTTTFYLITTYLPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA 305 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444556555 6778777666 888889999999999999999999999998876555444333 2222
Q ss_pred h--hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHH-HHHHHHHHHHHHHhcccccccCchhHHHHHH
Q 016428 137 T--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 137 ~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
+ .++.+.+++..++.|++.+...+....++.|.+|+++|+++.++. +.+..+|..++|.+++.+.+..|.|++.++.
T Consensus 306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~ 385 (394)
T TIGR00883 306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY 385 (394)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence 2 256677777889999998888889999999999999999999984 5667788999999999999877657777666
Q ss_pred HHHHH
Q 016428 214 SIVPA 218 (390)
Q Consensus 214 ~~~~~ 218 (390)
.+...
T Consensus 386 ~~~~~ 390 (394)
T TIGR00883 386 LAALA 390 (394)
T ss_pred HHHHH
Confidence 55433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-14 Score=128.38 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=128.0
Q ss_pred ccchhhhhhccccCCcc--hhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHH
Q 016428 71 NEPLESISLDLGFNGNT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR 148 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~--~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 148 (390)
.+..+.+.++.+.+.++ ...+.+.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILR 318 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34455555544322222 1235666777788889999999999999999999999888888888888888888889999
Q ss_pred HHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhc
Q 016428 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227 (390)
Q Consensus 149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~ 227 (390)
++.|++.+...+....++.+..|+++|++..++.+....+|..+||.+++.+.+..+ |++.|++.++..++..+..++
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 319 FLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988899999999999999999999999999999999999998888 899999988777776655543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.7e-13 Score=120.10 Aligned_cols=307 Identities=18% Similarity=0.191 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHh----HHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC----LGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~----~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
.......+-.+..++......+..+.....++.+....+ +...... .+...+.++..|.++||+|||..+....+
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~ 100 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF 100 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence 344445555555566665556666666666665433322 4444444 57778999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhcc--chhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC
Q 016428 127 PMIIGASISATTRNLIGMLLGRFVVGTGMG--LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204 (390)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g--~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 204 (390)
...+..+...+.. +|.++ +.|+..+ .......++++|....++|....|+.+.....+..++|.+++.+.+..
T Consensus 101 ~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~ 175 (463)
T KOG2816|consen 101 GTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL 175 (463)
T ss_pred HHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9888888777776 33333 5554433 345566788999999999999999999999999999999999999888
Q ss_pred chhHHHHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhc
Q 016428 205 GWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY 283 (390)
Q Consensus 205 g~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (390)
+ .-..|.+.++..++..+.. +++||+-. +++.++ ...+.......... ............-.
T Consensus 176 ~-~a~~f~ia~~~~~~~~~y~~~~l~Esl~----~~~~~~--~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 238 (463)
T KOG2816|consen 176 G-IALVFLIAAASGILSLLYMLLFLPESLQ----EKERSD--ATLRELTPGSLDSS----------HVADAFQSLTKVGP 238 (463)
T ss_pred C-chHHHHHHHHHHHHHHHHHhhccccccC----cccccc--ccccccCCCcccch----------hhhhhhhhhcccCC
Confidence 7 6888888877777766554 66888732 111110 00000000000000 00000001111111
Q ss_pred ccchhHHHHHHHHHHHHHhhchh-hHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH-HHHhhhCChHHHHHHHHHH
Q 016428 284 GRHFRVVFIGSTLFALQQLSGIN-AIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAM-VLMDKLGRKALLQWSFFSM 361 (390)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~ 361 (390)
+|....+....++.......... ..++|+...++....+.+......+....++.++.. .+...++.|+....|....
T Consensus 239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~ 318 (463)
T KOG2816|consen 239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSE 318 (463)
T ss_pred CccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHH
Confidence 23333333333333333322222 345566655666655666667777777778887766 6777788888888999999
Q ss_pred HHHHHHHHHhcccCCCCce
Q 016428 362 AVSMAIQVAASSSYIPGSA 380 (390)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~ 380 (390)
.+..+...+.+..+..+..
T Consensus 319 ~~~~~~~af~~~~w~~~~~ 337 (463)
T KOG2816|consen 319 FLQLLLFAFATETWMMFAA 337 (463)
T ss_pred HHHHHHHHHhccchhhhHH
Confidence 9999999998877665443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-13 Score=121.41 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=121.1
Q ss_pred cchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016428 72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV 151 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 151 (390)
..+|.+.++.|.+.++. ++..+.+.++..+++++.|++.||+|+|+++..+..+..++..... + ........++.
T Consensus 221 ~~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~ 295 (381)
T PRK03633 221 GLMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL 295 (381)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence 34677777778776665 8889999999999999999999999999999888888777665443 2 23344567888
Q ss_pred hhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhc
Q 016428 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227 (390)
Q Consensus 152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~ 227 (390)
|++.....|....++.|..|+++++...+.......+|..+||.+++.+.++.+ |++.|.+.+...++..+..+.
T Consensus 296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHh
Confidence 887777788888889999998888888888888999999999999999999888 899998877777665544443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-13 Score=122.40 Aligned_cols=156 Identities=12% Similarity=0.074 Sum_probs=127.2
Q ss_pred cccchhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHH
Q 016428 70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR 148 (390)
Q Consensus 70 ~~~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 148 (390)
+....|.+. +++|.+.++. +++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....+|...+.+..
T Consensus 224 ~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (394)
T PRK03699 224 FISWVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAI 301 (394)
T ss_pred HHHHHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 344566655 6678887776 8999999999999999999999999999999988887777777777778887777788
Q ss_pred HHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcc
Q 016428 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228 (390)
Q Consensus 149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~ 228 (390)
++.|++.+..++...++..|..| +++++..+.......+|..++|.+.+.+.+..| |+..+++.++..++..+....+
T Consensus 302 ~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 302 LGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHH
Confidence 89999888888887778888775 446788888888889999999999999999888 8999888777666665555444
Q ss_pred c
Q 016428 229 A 229 (390)
Q Consensus 229 ~ 229 (390)
+
T Consensus 380 ~ 380 (394)
T PRK03699 380 G 380 (394)
T ss_pred H
Confidence 4
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=123.82 Aligned_cols=168 Identities=18% Similarity=0.148 Sum_probs=116.1
Q ss_pred HHHHHHHhhhhcccccccchhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHH--HHH------HhH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR--AFQ------LCA 125 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~--~l~------~~~ 125 (390)
...+..+.............|.+. +++|.+..+. +++.+...++..++.++.|+++||+|||+ ... .+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG 296 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 333444444444444455556554 5577766655 88999999999999999999999999996 111 111
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc
Q 016428 126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (390)
Q Consensus 126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g 205 (390)
++..+........++....+....+.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 297 LVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 1112222222223344444444455555555 778888999999999999999999999999999999999999998776
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 016428 206 WWRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 206 ~wr~~f~~~~~~~~~~~~~~ 225 (390)
.|++.|++.++..++..+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 376 SFAGALMVVAALALIGALSY 395 (399)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 57888888777666655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.4e-13 Score=119.72 Aligned_cols=160 Identities=17% Similarity=0.149 Sum_probs=122.9
Q ss_pred ccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh-hHHHHHHH
Q 016428 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLIGMLLG 147 (390)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~ 147 (390)
......|.+.+++|.+.++. |...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ .
T Consensus 223 ~~~~~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~ 298 (393)
T PRK09705 223 SLIAWLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--W 298 (393)
T ss_pred HHHHHHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--H
Confidence 34445666767788877766 8999999999999999999999999999999998887777766554333 32222 2
Q ss_pred HHHHhhhccchhhhHHHHHhhcCC-CccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHH-h
Q 016428 148 RFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-M 225 (390)
Q Consensus 148 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~-~ 225 (390)
-++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..|.|...|.+.++..++..+. .
T Consensus 299 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK09705 299 AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITL 378 (393)
T ss_pred HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 346688888888877767777775 57899999999999999999999999999998766888888876666655544 3
Q ss_pred hcccCCh
Q 016428 226 VFCAESP 232 (390)
Q Consensus 226 ~~~~e~p 232 (390)
.+.||++
T Consensus 379 ~~~~~~~ 385 (393)
T PRK09705 379 RFAPARF 385 (393)
T ss_pred Hhccccc
Confidence 4566663
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=123.65 Aligned_cols=139 Identities=21% Similarity=0.173 Sum_probs=112.5
Q ss_pred chhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH-HHHhhhhHHHHHHHHHH
Q 016428 73 PLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-ISATTRNLIGMLLGRFV 150 (390)
Q Consensus 73 ~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~l~~~r~l 150 (390)
..|. +.+++|.+.++. +++.+.+.++..++.++.|+++||+|||+.+..+.....+... .....++.+.+.+..++
T Consensus 260 ~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (405)
T TIGR00891 260 LLPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF 337 (405)
T ss_pred hhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3444 456678877666 8999999999999999999999999999999888776533332 33445666777777788
Q ss_pred HhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHH
Q 016428 151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 151 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
.|++.+...+....++.|.+|+++|++++|+.+....+|..++|++++.+.+..|.|+..+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 887777777788889999999999999999999999999999999999999987756666544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-13 Score=122.09 Aligned_cols=132 Identities=20% Similarity=0.183 Sum_probs=107.2
Q ss_pred ccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 016428 67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL 146 (390)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~ 146 (390)
........|.+.+++|.+.++. ++..+...++..++.++.|+++||+|||+.+....+......++....++.+.+++
T Consensus 266 ~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (398)
T TIGR00895 266 VYFLTNWLPKLMVELGFSLSLA--ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLL 343 (398)
T ss_pred HHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 3334445677888888877666 88999999999999999999999999995554444433333333333567777888
Q ss_pred HHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccc
Q 016428 147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (390)
Q Consensus 147 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 200 (390)
..++.|++.+...+....++.|.+|+++|+++.++......+|..++|.++|.+
T Consensus 344 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 344 LGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 899999999999999999999999999999999999999999999999998865
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.7e-13 Score=121.34 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=111.7
Q ss_pred hhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHh---h-hhHHHHHHHHHHH
Q 016428 76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---T-RNLIGMLLGRFVV 151 (390)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~---~-~~~~~l~~~r~l~ 151 (390)
.+.+++|.+.+.. ..+.....+...++.++.|+++||+|||++++.+.++..++.+.... . ++...+++..++.
T Consensus 276 y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (438)
T PRK09952 276 YSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA 353 (438)
T ss_pred HHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3456677766543 44455556667788899999999999999998887766554433322 2 2344445566777
Q ss_pred hhhccchhhhHHHHHhhcCCCccchhHHHHHH-HHHHHHHHHHHHhcccccccC-chhHHHHHHHHHHHHHHHHHhhccc
Q 016428 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLAMVFCA 229 (390)
Q Consensus 152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~-g~wr~~f~~~~~~~~~~~~~~~~~~ 229 (390)
|++.+...+...++++|.+|.+.|+.+.++.+ .+..+|..++|.+.+++.+.. +.|+..+...++..++..+..+.++
T Consensus 354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 88888878888899999999999999988855 445588899999999987743 3388888877777777666666666
Q ss_pred CC
Q 016428 230 ES 231 (390)
Q Consensus 230 e~ 231 (390)
|+
T Consensus 434 ~~ 435 (438)
T PRK09952 434 DN 435 (438)
T ss_pred cc
Confidence 64
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=123.96 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=131.6
Q ss_pred ccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016428 71 NEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF 149 (390)
Q Consensus 71 ~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 149 (390)
....|.+.++ +|.+..+. |++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++.++.++.+.+.++.+
T Consensus 243 ~~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA 320 (417)
T ss_pred HHhhHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 3455666666 88877665 89999999999999999999999988888888888888888888888888888888899
Q ss_pred HHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHH-HHHHhhcc
Q 016428 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI-LCLAMVFC 228 (390)
Q Consensus 150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~-~~~~~~~~ 228 (390)
+.|++.+...+...+++.|..|++.|++++++++....+|..+|+.+.+.+.+..| ++..+.+.+...++ ..+....+
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhc
Confidence 99998888777778899999999999999999999999999999999999999887 67777765544444 44444556
Q ss_pred cCC
Q 016428 229 AES 231 (390)
Q Consensus 229 ~e~ 231 (390)
+|.
T Consensus 400 ~~~ 402 (417)
T PRK10489 400 GEL 402 (417)
T ss_pred ccc
Confidence 665
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=118.80 Aligned_cols=148 Identities=13% Similarity=0.068 Sum_probs=118.6
Q ss_pred hhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH-HHHHhhhhHHHHHHHHHHHhh
Q 016428 75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA-SISATTRNLIGMLLGRFVVGT 153 (390)
Q Consensus 75 ~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~-~~~~~~~~~~~l~~~r~l~G~ 153 (390)
|.+.++.|.+.++. +++.+.+.++..++.++.|+++||+|||++.. +..+..++. ......++.+.++++.++.|+
T Consensus 230 ~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~ 306 (390)
T PRK03545 230 PFVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGI 306 (390)
T ss_pred HHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 44555678877766 88999999999999999999999999887544 444444443 334556788888889999999
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhc
Q 016428 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~ 227 (390)
+.+...+.....+.|..| ++|++++++++....+|..+||++++.+.+..| ++..|++.+.+.++..+....
T Consensus 307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 307 AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHH
Confidence 988777777788888876 578999999999999999999999999999998 899999887777766555443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-12 Score=121.30 Aligned_cols=137 Identities=14% Similarity=0.016 Sum_probs=110.4
Q ss_pred HHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhH--HHHHHHHHHHhhhccchhhhHHHHHhhc
Q 016428 92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRFVVGTGMGLGPTVAALYVTEV 169 (390)
Q Consensus 92 ~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 169 (390)
+......+....+.++.++++||+|||+++.++.++.+++.++..+.++. +..++.-++.+++.+..++....+.+|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445556677889999999999999999999999999888888777644 4455566677777777788888999999
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcccCC
Q 016428 170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231 (390)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~ 231 (390)
+|++.|++++|+.+....+|.+++|.+.+ +.+ .+ +...+.+.+...++..+..+++||+
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~lpet 497 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTLFLPET 497 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHHcCcCC
Confidence 99999999999999999999999999988 433 33 5667777777777776777788887
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5e-13 Score=125.66 Aligned_cols=143 Identities=16% Similarity=0.071 Sum_probs=111.8
Q ss_pred ccchhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh--hhHHHHHHH
Q 016428 71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLG 147 (390)
Q Consensus 71 ~~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~ 147 (390)
...+|.+. +++|.+..+. +++.+.+.++..++.++.|+++||+|||++++.+.++..++.+..... .+.+.+.+.
T Consensus 295 ~~~lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL 372 (496)
T ss_pred HHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34567666 5888887766 899999999999999999999999999999988877766665544333 344444455
Q ss_pred HHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHH
Q 016428 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (390)
Q Consensus 148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~ 216 (390)
.++.+.......+....++.|.+|+++|++++++.+....+|..+||.+++.+.+..| |+..+...+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~ 440 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSF 440 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHH
Confidence 5555444434456667789999999999999999999999999999999999999888 8887765443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.8e-13 Score=120.07 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=118.1
Q ss_pred cccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHH-HhHHHHHHHHHHHHh-----hhhH
Q 016428 68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASISAT-----TRNL 141 (390)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~-~~~~~~~i~~~~~~~-----~~~~ 141 (390)
.......|.+.+++|.+.++. +++.+.+.++..++.++.|+++||+|||+.+. .+.+..+++.+.... .++.
T Consensus 239 ~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 316 (402)
T TIGR00897 239 FGFAVFLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSF 316 (402)
T ss_pred HHHHHHHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcH
Confidence 334456677888889887766 78888899999999999999999999988764 333333443333322 2466
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHH
Q 016428 142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL 221 (390)
Q Consensus 142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~ 221 (390)
+.+++..++.|++.+...+. ...+.|..| ++|+++.|+.+....+|..++|.+++.+.+..| |+..+++.++..++.
T Consensus 317 ~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~ 393 (402)
T TIGR00897 317 AVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVS 393 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHH
Confidence 77778888999888776544 456677654 689999999999999999999999999999888 889988877776666
Q ss_pred HHHhhc
Q 016428 222 CLAMVF 227 (390)
Q Consensus 222 ~~~~~~ 227 (390)
.+...+
T Consensus 394 ~~~~~~ 399 (402)
T TIGR00897 394 AFLTAF 399 (402)
T ss_pred HHHHHH
Confidence 555544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-12 Score=115.72 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=120.8
Q ss_pred cchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016428 72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV 151 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 151 (390)
...|.+.+|.|.+..+. |.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.+..+.+++.+.+++..++.
T Consensus 226 ~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (382)
T PRK11128 226 GFSAIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILH 303 (382)
T ss_pred HHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34455657788876655 8888888889999999999999999999999999999999888888899999999999999
Q ss_pred hhhccchhhhHHHHHhhcCCCccchhHHHHHH-HHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHH
Q 016428 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (390)
Q Consensus 152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~ 223 (390)
|++.+...+....++.+. +++++++..+... ....+|..+||.++|.+.+..+ + ..|+..+...++.++
T Consensus 304 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 304 CGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHH
Confidence 999998888888888887 5566788888886 5677888999999999999887 5 455555555544433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=106.32 Aligned_cols=263 Identities=13% Similarity=0.095 Sum_probs=180.9
Q ss_pred CcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHH-hHHHHHHHHHHHHhhhh--HH-HHHHHHHHHhhhccchhh
Q 016428 85 GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIGASISATTRN--LI-GMLLGRFVVGTGMGLGPT 160 (390)
Q Consensus 85 ~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~-~~~~~~i~~~~~~~~~~--~~-~l~~~r~l~G~~~g~~~~ 160 (390)
+.+..+|...++..+..++..|+.|.++|+.|+||..+. ...+..++..+..++++ ++ ..++.-.+..++.....+
T Consensus 55 ~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~V 134 (438)
T COG2270 55 SSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNV 134 (438)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhe
Confidence 344556888888889999999999999999997665554 45555556666666654 44 444567888899888888
Q ss_pred hHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhc------c----c-cc-------ccCchhHHHHHHHHHHHHHHH
Q 016428 161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG------I----P-VK-------EIAGWWRICFWVSIVPAAILC 222 (390)
Q Consensus 161 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~------~----~-l~-------~~~g~wr~~f~~~~~~~~~~~ 222 (390)
...+++.+..++++-++..+.-.....+|+.+.-++. + . .. +... =|..+.+.++.-++..
T Consensus 135 fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~ 213 (438)
T COG2270 135 FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFA 213 (438)
T ss_pred ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHH
Confidence 8899999999988878777666555555544433331 1 0 00 1222 5778888777777766
Q ss_pred HHhhc-ccCChhhHHhcCCH-HHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHH
Q 016428 223 LAMVF-CAESPHWLYKKGRT-AEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300 (390)
Q Consensus 223 ~~~~~-~~e~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (390)
+..++ .++.++- +.+. +.-....++ -..+++++.++++....+++.+++.-.
T Consensus 214 iPm~~~v~~~~~~---~~~~~~~l~~g~k~-----------------------L~~t~k~i~~~~~i~~FLiA~~~~~DG 267 (438)
T COG2270 214 LPMILNVHDAEKI---SSPPPTALRNGFKE-----------------------LKSTFKEIRGRKNLVLFLIARFFYIDG 267 (438)
T ss_pred hHHHhcccccccc---cccchHHHHHHHHH-----------------------HHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 65544 4444321 0011 000111111 123466677778888888888888777
Q ss_pred HhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhccc
Q 016428 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS 374 (390)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
..+....-..|....++.+..+.........+..++++++.|++.||+|.|+++.++.++..+.++...+....
T Consensus 268 v~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~ 341 (438)
T COG2270 268 VNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGE 341 (438)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcccc
Confidence 66666667777777777777777778888999999999999999999999999988888888877766655443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-11 Score=106.10 Aligned_cols=296 Identities=12% Similarity=0.054 Sum_probs=181.0
Q ss_pred ccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016428 71 NEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF 149 (390)
Q Consensus 71 ~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 149 (390)
+...|.+.+. .|++.+|.. .-+.-+..-.+....++...++|..|.|++++++.+...+...+.-+.++...+-+..+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~ 102 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQF 102 (412)
T ss_pred ccchHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence 3445666665 788887764 34555556677888899999999999999999999999999999999999999999999
Q ss_pred HHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc-hhHHHHHHHHHHHHHHHHHhhcc
Q 016428 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLAMVFC 228 (390)
Q Consensus 150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g-~wr~~f~~~~~~~~~~~~~~~~~ 228 (390)
+-|++.+. ..+-++|+-...|+++-.++.+...++.-+|..++.++|..+....+ ..+....+......+.++..+++
T Consensus 103 ~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 103 FYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998887 56777888888899999999999999999999999999887776432 25666666665556666666778
Q ss_pred cCChhhHHhcCCHHHHHHHHH-HHhCCCCchhHHHHhhhccc-CCCCc-------cchhhhhhcccchhHHHHHHHHHHH
Q 016428 229 AESPHWLYKKGRTAEAEAEFE-KLLGGSHVKSSLAELSKLDR-GDDGD-------IVKFEELLYGRHFRVVFIGSTLFAL 299 (390)
Q Consensus 229 ~e~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (390)
|..++...-+++.++.....+ +....++..+...+..+.++ .+... ..++++..+++......+- +.
T Consensus 182 P~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlW----Wa 257 (412)
T PF01770_consen 182 PMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLW----WA 257 (412)
T ss_pred CCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHH----HH
Confidence 876653332222111110000 00000000000000000000 00000 1123344455554443332 22
Q ss_pred HHhhchhhHHHhHHHHHhhc---C---CCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH--HHHHHHHHHHHHHHHh
Q 016428 300 QQLSGINAIFYFSSSVFKSA---G---LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ--WSFFSMAVSMAIQVAA 371 (390)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~--~~~~~~~~~~~~~~~~ 371 (390)
...+++..+..|.+...+.- . .-.|..-....+.+.++.+..|++-.++.+..-+. +..++.+..++++...
T Consensus 258 ~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t 337 (412)
T PF01770_consen 258 FATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT 337 (412)
T ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22333445555666555443 1 12455677777788888888998855555533333 2333334444444443
Q ss_pred c
Q 016428 372 S 372 (390)
Q Consensus 372 ~ 372 (390)
.
T Consensus 338 ~ 338 (412)
T PF01770_consen 338 G 338 (412)
T ss_pred h
Confidence 3
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-12 Score=115.75 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=105.3
Q ss_pred cccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh--hhHHHH-HHhHHHHHHHHHHHHh--hhhHHH
Q 016428 70 VNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAF-QLCALPMIIGASISAT--TRNLIG 143 (390)
Q Consensus 70 ~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~--Grr~~l-~~~~~~~~i~~~~~~~--~~~~~~ 143 (390)
....+|.+.++ .|.+.++. ++....+.++..++.++.|+++||+ |||+.. +....+..++.+...+ ..+...
T Consensus 272 ~~~~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 349 (452)
T PRK11273 272 ILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTV 349 (452)
T ss_pred HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHH
Confidence 34466766554 68876666 7888888899999999999999999 555432 2222333333332222 334454
Q ss_pred HHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHH-HHHHHhcccccccCchhHHHHHHHHHHHHHHH
Q 016428 144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222 (390)
Q Consensus 144 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~ 222 (390)
.+++.++.|.+..........+..|.+|+++|++++|+.+....+|. .++|.+.+.+.+..| |+..|++.+..+++.+
T Consensus 350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~ 428 (452)
T PRK11273 350 DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAV 428 (452)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence 55555566654333333334567899999999999999988777775 458999999999888 8999988777666665
Q ss_pred HHhh
Q 016428 223 LAMV 226 (390)
Q Consensus 223 ~~~~ 226 (390)
+...
T Consensus 429 ~~~~ 432 (452)
T PRK11273 429 ILLI 432 (452)
T ss_pred HHHH
Confidence 5443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=116.26 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=115.4
Q ss_pred cchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhh-HHHHHHHHH
Q 016428 72 EPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN-LIGMLLGRF 149 (390)
Q Consensus 72 ~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~-~~~l~~~r~ 149 (390)
...|.+.++ +|.+..+. +++.+.+.++..++.++.+++.||+|||+.+..+..+.+++.....+.++ .+.+++..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHY--GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF 309 (365)
T ss_pred HHhHHHHHHHhCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 455666655 78776665 89999999999999999999999999999999988888888888887774 888889999
Q ss_pred HHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC
Q 016428 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204 (390)
Q Consensus 150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 204 (390)
+.|++.+...+....++.|..|+++|+++.++.+....+|..+++.+++.+.+..
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999887653
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-12 Score=114.26 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=115.1
Q ss_pred hHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhc
Q 016428 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV 169 (390)
Q Consensus 90 ~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 169 (390)
.|.+.++..+...++.+..|++.||+|||+.+.++.++.+++..+...++|.+.+++.++++|++..........+..+.
T Consensus 256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 335 (396)
T TIGR00882 256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ 335 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37888888888899999999999999999999999999998888878889999999999999998777666666777888
Q ss_pred CCCccchhHHHH-HHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHh
Q 016428 170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 170 ~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~ 225 (390)
.|++.++...+. .+....+|..+++.++|++.+..| |+..|.+.++..++..+..
T Consensus 336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence 888888887766 578899999999999999999888 8999998777766655443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=112.17 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhhhhcccc-cccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhH--HHHHHhHHH
Q 016428 51 PHVLVATLSSFLFGYHLGV-VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCALP 127 (390)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr--~~l~~~~~~ 127 (390)
+.+....++.++..-..+. .......-.+++|++..+. ..+.-+..+...+|++++|++.||+|.| ++++++++.
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLIL 358 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 3344445554544333333 3333444566899988876 5667777888899999999999999999 999999888
Q ss_pred HHHHHHHHHh--------hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccc
Q 016428 128 MIIGASISAT--------TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199 (390)
Q Consensus 128 ~~i~~~~~~~--------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 199 (390)
+.+..+...+ .++-+.+.+.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||++-+.
T Consensus 359 ~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~ 438 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL 438 (477)
T ss_pred HHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8666665555 67788899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHhhcccCC
Q 016428 200 VKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231 (390)
Q Consensus 200 l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~ 231 (390)
+.+..|.-|+.+....++.++.+++.++++.+
T Consensus 439 i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 439 ITDATGSQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence 99887657888887777777776666666544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=115.84 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=108.9
Q ss_pred ccccccchhhhhh-ccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh---hhHH
Q 016428 67 LGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---RNLI 142 (390)
Q Consensus 67 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~---~~~~ 142 (390)
........|.+.+ .+|.+..+. ++....+.++..++.++.|++.||+|||+++..+..+.+++..+..+. ++.+
T Consensus 277 ~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (471)
T PRK10504 277 SGMLPFMTPVFLQIGLGFSPFHA--GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYY 354 (471)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3334445666655 467665555 888888888888888999999999999999999988888877766553 3344
Q ss_pred HHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc
Q 016428 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (390)
Q Consensus 143 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g 205 (390)
.+.+.-++.|++.+...+....++.+..|+++|+.+.++.+....+|..+|+.+++.+.+..+
T Consensus 355 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 355 LLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455567888888888888888999999999999999999999999999999999887766543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=112.57 Aligned_cols=163 Identities=22% Similarity=0.163 Sum_probs=109.1
Q ss_pred HHhhhhcccccccchhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh--h-hHHHHHHh---HHHHHHHH
Q 016428 60 SFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--G-RRRAFQLC---ALPMIIGA 132 (390)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~--G-rr~~l~~~---~~~~~i~~ 132 (390)
.+........+...+|.+. +++|.+..+. ++..+.+.++..++.++.|+++||+ + ||...... .....++.
T Consensus 252 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK11663 252 YVLVYVVRAAINDWGNLYMSETLGVDLVTA--NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL 329 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence 3333333333444556555 6778887776 7889999999999999999999999 3 33332221 12111111
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHH
Q 016428 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (390)
Q Consensus 133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~ 212 (390)
.... ..+...+.+..+..|++..........++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..| |+..|.
T Consensus 330 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~ 407 (434)
T PRK11663 330 WLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFV 407 (434)
T ss_pred HHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHH
Confidence 1111 23333333444555554333233334567899999999999999999999999999999999999888 999998
Q ss_pred HHHHHHHHHHHHhh
Q 016428 213 VSIVPAAILCLAMV 226 (390)
Q Consensus 213 ~~~~~~~~~~~~~~ 226 (390)
+.++..++..+..+
T Consensus 408 ~~~~~~~~~~~~~~ 421 (434)
T PRK11663 408 VISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777766655443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=109.04 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=119.0
Q ss_pred hhhhhhccccCCcchhhHHHHH-HhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHH---Hhh-hhHHHHHHHH
Q 016428 74 LESISLDLGFNGNTLAEGLVVS-MCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATT-RNLIGMLLGR 148 (390)
Q Consensus 74 ~~~~~~~~~~~~~~~~~g~~~s-~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r 148 (390)
.|.+.+++|.+.++. +++.. ...++..++.++.|+++||+|+|+.+.++.++.+++.+.. +.. ++...+.+.-
T Consensus 246 ~~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~ 323 (491)
T PRK11010 246 TTFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV 323 (491)
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344556788887776 88774 5567999999999999999999988877666555544332 333 4555555566
Q ss_pred HHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcc
Q 016428 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228 (390)
Q Consensus 149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~ 228 (390)
+++.++.|...+...++..+..+++.+++..++.+....+|..+++.+.|.+.+..| |+..|.+.++.+++.++...++
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666667777888999999999999999999999998888888999999888 9999998888887776666555
Q ss_pred cCC
Q 016428 229 AES 231 (390)
Q Consensus 229 ~e~ 231 (390)
+++
T Consensus 403 ~~~ 405 (491)
T PRK11010 403 RQT 405 (491)
T ss_pred Hhc
Confidence 443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-11 Score=111.05 Aligned_cols=137 Identities=14% Similarity=0.051 Sum_probs=101.3
Q ss_pred ccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh--hHHHHHHHH
Q 016428 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGR 148 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r 148 (390)
...+|.+.++.|.+.++. +.+.+.+.++..++.++.|+++||+|||+.+..+.++..+..+.....+ +.....+..
T Consensus 251 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (426)
T PRK12307 251 FGLLPTYLAGEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL 328 (426)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 345677777778766555 7888889999999999999999999999999988877766655444332 222222222
Q ss_pred HHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHH
Q 016428 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (390)
Q Consensus 149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~ 210 (390)
+..+++..+..+..+.++.|.+|+++|++++|+......+|..++|.+.+.+.+..+ +...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~ 389 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA 389 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence 222333333345566788999999999999999999999999999999999998877 4543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=112.35 Aligned_cols=115 Identities=19% Similarity=0.146 Sum_probs=98.4
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhccchhhhHHHHHhhc
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVTEV 169 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 169 (390)
+++.+...++..++.+++++++||+|+|+++..+.++.+++.+...+. ++.+.+++..++.|++.+...+...++++|.
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT 339 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 778888899999999999999999999999999998888887777665 4667777788899999999888888999888
Q ss_pred CC-------CccchhHHHHHHHHHHHHHHHHHHhcccccccCc
Q 016428 170 SP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (390)
Q Consensus 170 ~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g 205 (390)
.| ++++|.+.++.+....+|..+++.+.+.+.+..|
T Consensus 340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 65 4567999999999999999999999888776544
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=114.24 Aligned_cols=176 Identities=15% Similarity=0.173 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhh--hHHHHHHhHHHHH
Q 016428 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMI 129 (390)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~~ 129 (390)
.++...+...+......+....+|.+.++.+.+.++. +.+.++..+...++.++.|+++|+.. ++.+..+++++.+
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~g 376 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAG 376 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHH
Confidence 4566666677777777777788999999999888777 89999999999999999999999988 6677788899999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHH
Q 016428 130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (390)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~ 209 (390)
++.+.++++++++.++..-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||++.+.+.+..+.|..
T Consensus 377 l~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~ 456 (509)
T KOG2504|consen 377 LARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH 456 (509)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999998877899
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 016428 210 CFWVSIVPAAILCLAMVFCA 229 (390)
Q Consensus 210 ~f~~~~~~~~~~~~~~~~~~ 229 (390)
.|+..++..++..+.++..+
T Consensus 457 ~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 457 AFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ehhhcChHHHHHHHHHHHhH
Confidence 99998888877776666655
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=110.60 Aligned_cols=149 Identities=15% Similarity=0.013 Sum_probs=112.5
Q ss_pred chhhhhhccccCCcchhhHHHHHHhH-HHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHh------hhhHHHHH
Q 016428 73 PLESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT------TRNLIGML 145 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~g~~~s~~~-~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~------~~~~~~l~ 145 (390)
..+.+.+|.|.+.++. |++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.
T Consensus 230 ~~~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW 307 (390)
T ss_pred HhhHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence 3455666789887776 88887775 466678899999999999999998877665333332221 23344445
Q ss_pred HHHHHHhhhccchhhhHHHHHhhcCCC-ccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHH
Q 016428 146 LGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~ 224 (390)
....+.+++.|...+.......+..++ +++++.+++.+....+|..++|.++|.+.+..| |+..|.+.++..++..+.
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHH
Confidence 556667777787777777787777776 889999999999999999999999999999888 899998877666655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=113.46 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=132.0
Q ss_pred ccchhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016428 71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF 149 (390)
Q Consensus 71 ~~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 149 (390)
...+|.+. +++|.+.... |++.+.+.+|..+|.++.+++.+|+++++.+..+.++++++.+..+++++.+..+++-+
T Consensus 238 ~aLlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~ 315 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALF 315 (524)
T ss_pred HHhhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34567665 4577666555 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHH
Q 016428 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~ 224 (390)
+.|++.....+...+.+.+..|++.|||+++++.+....+..+|..+.|.+.+..| -+..+.+.++..++..++
T Consensus 316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH
Confidence 99999998888888999999999999999999999999999999999999999888 688887766555444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=110.45 Aligned_cols=135 Identities=19% Similarity=0.100 Sum_probs=96.8
Q ss_pred ccccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH-HH---HhhhhHHH
Q 016428 69 VVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-IS---ATTRNLIG 143 (390)
Q Consensus 69 ~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~-~~---~~~~~~~~ 143 (390)
......|.+.++ +|.+.++. ++....+.++..++.++.|+++||+|||++++.+..+..+... .. ...+++..
T Consensus 256 ~~~~~~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T PRK15075 256 LITVYTPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFAR 333 (434)
T ss_pred HHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 344556766554 78877665 7888888899999999999999999999998876554433221 11 12234444
Q ss_pred HHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHH-HHHHHHHHHHHhcccccccCc
Q 016428 144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAG 205 (390)
Q Consensus 144 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~~g 205 (390)
+.+..++.|++.+...+....++.|.+|+++|+++.++... +..++..++|.+.+.+.+..|
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 334 MLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 44555666676666666667889999999999999998644 444456778999998888766
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.7e-11 Score=103.12 Aligned_cols=162 Identities=20% Similarity=0.182 Sum_probs=132.3
Q ss_pred HhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh-h
Q 016428 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-R 139 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~-~ 139 (390)
+...-....+...-|.+.+..|.+.+.. +++.-+|.++..+|+.+.|++.|| +.|+.+.....+.++..+...+. +
T Consensus 222 l~~~g~F~~ftYi~P~L~~v~g~s~~~v--s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~ 298 (394)
T COG2814 222 LFMTGHFALYTYIRPFLESVAGFSVSAV--SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGA 298 (394)
T ss_pred HHHcchhhhHHhHHHHHHHccCCCHhHH--HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444556667788888899888777 899999999999999999999999 99999999988888777776665 4
Q ss_pred hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHH
Q 016428 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219 (390)
Q Consensus 140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~ 219 (390)
+.+..++.-++.|+..+.........+++ .-++.+..+.++....+++|..+|..+|+.+.++.| +....++.++..+
T Consensus 299 ~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~ 376 (394)
T COG2814 299 SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLL 376 (394)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHH
Confidence 55566666777888877777666666777 336779999999999999999999999999999988 8999999888888
Q ss_pred HHHHHhhc
Q 016428 220 ILCLAMVF 227 (390)
Q Consensus 220 ~~~~~~~~ 227 (390)
+.++..+.
T Consensus 377 ~a~~~~~~ 384 (394)
T COG2814 377 LALLLALL 384 (394)
T ss_pred HHHHHHHH
Confidence 77766544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-11 Score=109.97 Aligned_cols=157 Identities=12% Similarity=0.072 Sum_probs=97.8
Q ss_pred ccchhhh-hhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHH--h--hhhHHHHH
Q 016428 71 NEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA--T--TRNLIGML 145 (390)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~--~--~~~~~~l~ 145 (390)
...+|.+ .+++|.+.++. ++..++..++..+++++.|+++||+|||+++..+..+.++...... . .++....+
T Consensus 263 ~~~lp~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (432)
T PRK10406 263 TTYMQKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAF 340 (432)
T ss_pred HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 3445554 45678776555 7778887788889999999999999999988776655433332211 1 22333222
Q ss_pred HHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHH-HHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHH
Q 016428 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~ 224 (390)
..-.+.+++.+...+....+++|++|++.|+++.|+.+....+ .....|.+.+.+.. .|.|...++..++..++..+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 341 GLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHH
Confidence 2222222333334445667889999999999999998765443 23347777775543 343666666666666655555
Q ss_pred hhcccC
Q 016428 225 MVFCAE 230 (390)
Q Consensus 225 ~~~~~e 230 (390)
.+++++
T Consensus 420 ~~~l~~ 425 (432)
T PRK10406 420 SLMLHR 425 (432)
T ss_pred HHHhhh
Confidence 554433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-11 Score=109.53 Aligned_cols=140 Identities=12% Similarity=0.025 Sum_probs=111.3
Q ss_pred hHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhccchhhhHHHHHhh
Q 016428 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168 (390)
Q Consensus 90 ~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 168 (390)
.+++.+.+.+.....+++.|++.||.++|+.+..+..+..++.....++ ++.+.++++.++.|+|.+...|....++.+
T Consensus 246 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 325 (395)
T PRK10054 246 VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDH 325 (395)
T ss_pred HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3777888877777888899999999999999999988888888777764 577777788999999998888888889999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHH-hhcccCC
Q 016428 169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAES 231 (390)
Q Consensus 169 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~-~~~~~e~ 231 (390)
..|++.|+++.+..+ ...+|..+||.+++.+.++.| .+..|++.+....+..++ .....|+
T Consensus 326 ~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (395)
T PRK10054 326 IAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAAWLLMLKGMRAR 387 (395)
T ss_pred hCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999988655 455899999999999999988 577777654444443333 3334444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-11 Score=111.61 Aligned_cols=151 Identities=12% Similarity=0.006 Sum_probs=104.1
Q ss_pred hhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhH-------HHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 016428 74 LES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR-------RAFQLCALPMIIGASISATTRNLIGML 145 (390)
Q Consensus 74 ~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr-------~~l~~~~~~~~i~~~~~~~~~~~~~l~ 145 (390)
+|. +.+++|.+..+. +.+.+.+.++..++.++.|+++||+||| ....+..++.++..++.+..++.+..+
T Consensus 275 ~p~~l~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 352 (476)
T PLN00028 275 IAEYFYDRFGLSLETA--GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAI 352 (476)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 444 456678887766 8899999999999999999999999875 233334444444444555566666666
Q ss_pred HHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHh
Q 016428 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~ 225 (390)
+.-++.+++.+...+....++.+.. +++|+...|+.+.+..+|..+++.+.+ .....+ |+..|++.++..++..+..
T Consensus 353 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~-y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 353 VVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYS-TETGISLMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCcc-HhhHHHHHHHHHHHHHHHH
Confidence 5666666665555555556666665 568999999998877778777776643 222334 8999988877777776666
Q ss_pred hccc
Q 016428 226 VFCA 229 (390)
Q Consensus 226 ~~~~ 229 (390)
++.+
T Consensus 430 ~~~~ 433 (476)
T PLN00028 430 AFIH 433 (476)
T ss_pred Hhee
Confidence 5554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-10 Score=94.79 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHH
Q 016428 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (390)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~ 129 (390)
|..+..........+ ....++..-|.+++.+|++.+|. ..+.+.-.+|..+ .++.|.+.|++|++.++++|.+...
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~ 77 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGF 77 (250)
T ss_pred hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHH
Confidence 544444444443333 44456677789999999887776 7888888999876 5889999999999999999999999
Q ss_pred HHHHHHHhh-------hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 016428 130 IGASISATT-------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 130 i~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 202 (390)
+|......+ .+++.+.+..++.|.+.+...+.......+.|| ++||++.|+.-...+++..+-..+...+.+
T Consensus 78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 998876543 467888888888888877777777777778897 579999999999999986554444444443
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhcccCC
Q 016428 203 IAGWWRICFWVSIVPAAILCLAMVFCAES 231 (390)
Q Consensus 203 ~~g~wr~~f~~~~~~~~~~~~~~~~~~e~ 231 (390)
... -+..+.....+.++.++..+++++.
T Consensus 157 ~~~-~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 157 DDP-SSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred CCh-HHHHHHHHHHHHHHHHHHhhheecc
Confidence 332 3555555555555555555555444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-11 Score=106.15 Aligned_cols=135 Identities=18% Similarity=0.072 Sum_probs=106.1
Q ss_pred ccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-hhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016428 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRNLIGMLLGRF 149 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 149 (390)
...+|.+.++.|.+..+. +.+.+.+.++..++.++.|++.||+ +||+.+..+..+.+++.+...+.++..... .-+
T Consensus 217 ~~~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 293 (355)
T TIGR00896 217 IGWLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WAL 293 (355)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHH
Confidence 345677777788876666 8999999999999999999999999 567777788888888777777665433322 456
Q ss_pred HHhhhccchhhhHHHHHhhcCC-CccchhHHHHHHHHHHHHHHHHHHhcccccccCchhH
Q 016428 150 VVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (390)
Q Consensus 150 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr 208 (390)
+.|++.|...+.....+.+..+ +++++...++.+....+|..++|.+.+.+.++.|.|.
T Consensus 294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 7899999988887777765554 5667888999888888899999999999988776454
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=106.13 Aligned_cols=161 Identities=17% Similarity=0.102 Sum_probs=104.9
Q ss_pred HHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHH-HHHhHHHHHHHHHHH
Q 016428 57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA-FQLCALPMIIGASIS 135 (390)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~-l~~~~~~~~i~~~~~ 135 (390)
....+........+...+|.+.++++.+.+....++..+...++..++.++.|+++||++||+. +.....+.+++..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~ 327 (412)
T TIGR02332 248 TLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA 327 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH
Confidence 3333444444444556778888775432222333888999999999999999999999997764 344443444433222
Q ss_pred HhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHH
Q 016428 136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215 (390)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~ 215 (390)
...++....+++-.+.+++.....+.......|.+|+++|+++.|+.+....+|..++|.+.+.+.+..|.|++.|++.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~ 407 (412)
T TIGR02332 328 SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVA 407 (412)
T ss_pred HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHH
Confidence 22223222222222233333333334445557789999999999999999999999999999999987755899887665
Q ss_pred HH
Q 016428 216 VP 217 (390)
Q Consensus 216 ~~ 217 (390)
+.
T Consensus 408 ~~ 409 (412)
T TIGR02332 408 AL 409 (412)
T ss_pred HH
Confidence 53
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-11 Score=108.85 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=102.6
Q ss_pred cchhhhhh-ccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHH---HHHHHHHh--hhhHHHHH
Q 016428 72 EPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI---IGASISAT--TRNLIGML 145 (390)
Q Consensus 72 ~~~~~~~~-~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~---i~~~~~~~--~~~~~~l~ 145 (390)
...|.+.+ ..|.+..+. ++....+.++..++.++.|+++||+|+|+....+..+.. ++.+.... ..+.+...
T Consensus 272 ~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (438)
T TIGR00712 272 DWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDM 349 (438)
T ss_pred HhHHHHHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 45565554 467777666 888899999999999999999999965432222322221 11122122 22344444
Q ss_pred HHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHH-HHHHHHhcccccccCchhHHHHHHHHHHHHHHHHH
Q 016428 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG-LMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~ 224 (390)
+.-++.|++.............|.+|+++|+++.|+.+....+| ..++|.+.+.+.+..| |.+.|++.+...++..+.
T Consensus 350 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~ 428 (438)
T TIGR00712 350 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVIL 428 (438)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 44555565433322222345789999999999999998877766 5789999999999888 899988766655554443
Q ss_pred -hhcccCC
Q 016428 225 -MVFCAES 231 (390)
Q Consensus 225 -~~~~~e~ 231 (390)
.++.||+
T Consensus 429 ~~~~~~~~ 436 (438)
T TIGR00712 429 LIVVMIGE 436 (438)
T ss_pred HHHHHhhc
Confidence 4556665
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-11 Score=109.53 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=104.5
Q ss_pred HHHHhhhhcccccccchhhh-hhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhh-hHHHHH-HhH-HHHHHHHH
Q 016428 58 LSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQ-LCA-LPMIIGAS 133 (390)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~G-rr~~l~-~~~-~~~~i~~~ 133 (390)
+..+.............|.+ .+++|.+..+. ++..+.+.++..++.++.|+++||.+ ||+... ... ....++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
T TIGR00881 223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKA--SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLL 300 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 33333333333334444544 45678776666 88999999999999999999999864 333222 221 11222222
Q ss_pred HHHh--hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHH
Q 016428 134 ISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (390)
Q Consensus 134 ~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f 211 (390)
.... ..+....++..++.|+......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f 379 (379)
T TIGR00881 301 VYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAGAF 379 (379)
T ss_pred HHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-ccccC
Confidence 2222 34555666677778876666666667788999999999999999999999999999999999999888 88654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-10 Score=102.07 Aligned_cols=144 Identities=15% Similarity=0.019 Sum_probs=112.3
Q ss_pred hhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 016428 74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT 153 (390)
Q Consensus 74 ~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 153 (390)
.|.+.+++|.+.++. +++...+.++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|+
T Consensus 240 ~p~~~~~~g~s~~~~--g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~ 317 (394)
T PRK10213 240 RPVYMNLAGFGVDGL--TLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL 317 (394)
T ss_pred HHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 466778888887766 888999999999999999999999654443443333334444444566777888888999999
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHH
Q 016428 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL 221 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~ 221 (390)
+.+...+...+++.+..| +++++..+.......+|..+|+.++|.+.+..| ++..+...+...++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHH
Confidence 999988888888888887 556788888888889999999999999999887 788887766554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-10 Score=99.06 Aligned_cols=156 Identities=12% Similarity=0.104 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhh---ccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISL---DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~ 129 (390)
+.+..++.++............+.+.+ .+|.++++. ++..+.+..+..++.++.+++.||+|+|+++.++..+..
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~ 219 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 333444444443333344444455544 357777666 899999999999999999999999999999988888888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHH
Q 016428 130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (390)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~ 209 (390)
++.++....++... ..+-++.|++.+..+|...+...+..|++ .+.+.++. ....+|..+.|.+.|.+.+..| .+.
T Consensus 220 ~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~ 295 (310)
T TIGR01272 220 LLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQL 295 (310)
T ss_pred HHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chH
Confidence 87766666554433 34556889999999999998888888654 45666765 4566889999999999998877 688
Q ss_pred HHHHH
Q 016428 210 CFWVS 214 (390)
Q Consensus 210 ~f~~~ 214 (390)
.|++.
T Consensus 296 a~~v~ 300 (310)
T TIGR01272 296 AFALP 300 (310)
T ss_pred HHHHH
Confidence 87643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-10 Score=102.10 Aligned_cols=175 Identities=20% Similarity=0.264 Sum_probs=131.7
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccc-cCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~ 133 (390)
+..+..++.+..........+.+.++.| .+.+.. +.+.++..++-...-...+++..|+|.|+++.++.+..++=..
T Consensus 211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~ 288 (400)
T PF03825_consen 211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWL 288 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3334445555555556666677778877 554444 6667777778888889999999999999999999999999888
Q ss_pred HHHhh-hhHHHHHH----HHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHH-HHHHHHHHHHHhcccccccCch-
Q 016428 134 ISATT-RNLIGMLL----GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAGW- 206 (390)
Q Consensus 134 ~~~~~-~~~~~l~~----~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~~g~- 206 (390)
+.+.. ++.+...+ ...++|+..+........++.+..|++.|+++.++++. ..++|..+|..++|++.+..|.
T Consensus 289 l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 289 LYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred HHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 88877 55444333 35679999999999999999999999999999999876 5789999999999999987652
Q ss_pred ----hHHHHHHHHHHHHHHHHHh-hcccCC
Q 016428 207 ----WRICFWVSIVPAAILCLAM-VFCAES 231 (390)
Q Consensus 207 ----wr~~f~~~~~~~~~~~~~~-~~~~e~ 231 (390)
|...+.+.+...++..++. ++++|+
T Consensus 369 ~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 369 GMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4445555555554444433 344443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=103.46 Aligned_cols=148 Identities=12% Similarity=0.063 Sum_probs=107.4
Q ss_pred hhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHh-hhhHHHHHHHHHHHh
Q 016428 74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-TRNLIGMLLGRFVVG 152 (390)
Q Consensus 74 ~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~-~~~~~~l~~~r~l~G 152 (390)
.|.+.+.+|.+.++. +++.+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..++.+
T Consensus 223 ~~~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T PRK10091 223 KPYMMFISGFSETSM--TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC 300 (382)
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355666678877666 89999999999999999999999999999999988888877765543 455566666666667
Q ss_pred hhccchhhhHHH-HHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHh
Q 016428 153 TGMGLGPTVAAL-YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 153 ~~~g~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~ 225 (390)
++.....+.... ...+..+++.++.. ..+....+|..+||.+++.+.+..++|++.+.+.+....+.+...
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 665544443333 34444445555544 346678899999999999999864338999998776666654444
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-10 Score=102.45 Aligned_cols=144 Identities=14% Similarity=0.123 Sum_probs=110.2
Q ss_pred hhhh-hhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh-----hhHHHHHHH
Q 016428 74 LESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGMLLG 147 (390)
Q Consensus 74 ~~~~-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~ 147 (390)
.|.+ .+++|.+..+. ++......++..++.++.|+++||+|+|+.+..+..+..++.++.+.. ++.+.++++
T Consensus 238 ~p~~~~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (406)
T PRK15402 238 SPVILISGEQLSSYEY--GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG 315 (406)
T ss_pred hHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 3443 56678776555 777777788889999999999999999999999888877777766553 356677788
Q ss_pred HHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHH
Q 016428 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL 221 (390)
Q Consensus 148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~ 221 (390)
-++.|++.+...+........ .++++|++..+..+....+|..+|+.+++.+.+..+ |....+..++..++.
T Consensus 316 ~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 316 LSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHH
Confidence 899999988877666555443 345889999999999999999999999999988877 444444444444443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-10 Score=97.92 Aligned_cols=172 Identities=19% Similarity=0.175 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh--hhHH-HHHHhHH
Q 016428 51 PHVLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRR-AFQLCAL 126 (390)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~--Grr~-~l~~~~~ 126 (390)
+.++.+++++++.+..+..+.--.|. +.|..|.+..+. ++..+.|-++...|.+++|++|||+ |||. +-++.++
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a--~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~ 329 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKA--NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML 329 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH--HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 45778888888888888777666664 566678887777 8999999999999999999999996 6664 4455566
Q ss_pred HHHHHHHHHHhhh--hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHH-HHHHHHHhccccccc
Q 016428 127 PMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEI 203 (390)
Q Consensus 127 ~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~ 203 (390)
...++.+..-.++ |+....++-++.|+..-+..-.......|..|++--|.+.|+.+....+ |...+...-+.+.+.
T Consensus 330 ~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 330 LITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 6666655555555 4588888899999887666666667788999999999999999998888 889999999999888
Q ss_pred CchhHHHHHHHHHHHHHHHHHh
Q 016428 204 AGWWRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 204 ~g~wr~~f~~~~~~~~~~~~~~ 225 (390)
.| |...|.+..+.++++.++.
T Consensus 410 ~g-W~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 410 WG-WDGGFIVLSIAALLAILLL 430 (448)
T ss_pred CC-CcchHHHHHHHHHHHHHHH
Confidence 88 9999988666666655444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-10 Score=102.75 Aligned_cols=151 Identities=11% Similarity=-0.001 Sum_probs=114.3
Q ss_pred cchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhc-hhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016428 72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV 150 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d-~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 150 (390)
...|.+.++.+.++.+. +++.+...++...+..+.+++.| |++.|+.+..+..+.+++.++.+++++++.+.+..++
T Consensus 229 ~~~p~~~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 306 (400)
T PRK11646 229 LMLPIMVNDIAGSPSAV--KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL 306 (400)
T ss_pred HhhhhhHHhhcCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34566666655444444 78888877766666666677665 5676777788888888888888888888888888888
Q ss_pred HhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc---hhHHHHHHHHHHHHHHHHH
Q 016428 151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG---WWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 151 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g---~wr~~f~~~~~~~~~~~~~ 224 (390)
.|++.+...|...+++.|..|+++|++++++.+....+|..+||.+++.+.+..+ .-...+++.++.+++..+.
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 9998888888888999999999999999999999999999999999999987642 1234444444444444333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-10 Score=92.49 Aligned_cols=172 Identities=16% Similarity=0.079 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHH
Q 016428 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (390)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~ 129 (390)
..++.+++..+....+....+++. .+++.+|++..+. +.+.+....-.++.+++.|.++|++|++...+.+..+..
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~t 341 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILT 341 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHH
Confidence 334445555555444444333333 3789999988777 677777777778899999999999999998888766655
Q ss_pred HHHH-HHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch--
Q 016428 130 IGAS-ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-- 206 (390)
Q Consensus 130 i~~~-~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~-- 206 (390)
+..- ...+ +++.-.++..+.|+..+.........++...|+++.|++.|..+...++|..+.|++.+.+.+..|+
T Consensus 342 l~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~ 419 (459)
T KOG4686|consen 342 LLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD 419 (459)
T ss_pred HHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence 5432 2222 3344456677888888877666778889999999999999999999999999999999999987764
Q ss_pred hHHHHHHH-HHHHHHHHHHhhc
Q 016428 207 WRICFWVS-IVPAAILCLAMVF 227 (390)
Q Consensus 207 wr~~f~~~-~~~~~~~~~~~~~ 227 (390)
|--.|.+. ..+++....+.+.
T Consensus 420 ~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 420 NLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 44455543 3334433333333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=99.29 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=132.1
Q ss_pred hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcc
Q 016428 77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG 156 (390)
Q Consensus 77 ~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 156 (390)
-.+++|++..+. .++.....+..++|++++|+|.||+|.|+++..++++..+.++..-+...-..+.++-.+.|...|
T Consensus 279 g~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G 356 (438)
T COG2270 279 GAADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG 356 (438)
T ss_pred HHHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence 345899987776 677788888899999999999999999999999999999998888888777778888899999999
Q ss_pred chhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcccCC
Q 016428 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231 (390)
Q Consensus 157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~ 231 (390)
..+...-+|.++..|+++-++.+|+++...-.++.+||.+-+.+.+..+.-|.-+....++..+.++..+..|++
T Consensus 357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999999999999999999999999999999999988877656777666666666666666666654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-13 Score=124.80 Aligned_cols=161 Identities=17% Similarity=0.110 Sum_probs=105.2
Q ss_pred cccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHH--h---hhh
Q 016428 66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA--T---TRN 140 (390)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~--~---~~~ 140 (390)
.........+.+.++.+.+.+ . +......+...++.++...+.||+|||+.++.+.++.+++.+..+ . .++
T Consensus 268 g~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~ 343 (451)
T PF00083_consen 268 GINFIFYYSPSIFENAGISNS-F---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSS 343 (451)
T ss_pred ccccccccccccccccccccc-c---cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 334445556778888887766 2 222333344556777777999999999999999999888877765 1 121
Q ss_pred -----HHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHH
Q 016428 141 -----LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215 (390)
Q Consensus 141 -----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~ 215 (390)
...+............+..+....+.+|.+|.+.|+++.++......++..+++.+...+.+..+. ...+.+.+
T Consensus 344 ~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~i~~ 422 (451)
T PF00083_consen 344 SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGG-WGVFLIFA 422 (451)
T ss_pred ccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccchhhH
Confidence 222222222111112233456667889999999999999999998888888888888877766542 33444444
Q ss_pred HHHHH-HHHHhhcccCC
Q 016428 216 VPAAI-LCLAMVFCAES 231 (390)
Q Consensus 216 ~~~~~-~~~~~~~~~e~ 231 (390)
...++ .++..+++||+
T Consensus 423 ~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 423 GVCLIAIIFVYFFLPET 439 (451)
T ss_pred HHHHHHHhheeEEEeeC
Confidence 44444 44555779999
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.5e-10 Score=103.26 Aligned_cols=174 Identities=12% Similarity=0.065 Sum_probs=112.3
Q ss_pred HHHHHHHHHhhhhcccccccchhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHH--------HHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA--------FQL 123 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~--------l~~ 123 (390)
+....+..+........+...+|.+. +++|.+..+. |++.++..++..++.++.|+++||+++|+. +..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 340 (465)
T TIGR00894 263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKEN--GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN 340 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 44444555555444444455566554 5578877666 899999999999999999999999875522 111
Q ss_pred hHHHH--HHHHHHHHh-hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccc
Q 016428 124 CALPM--IIGASISAT-TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (390)
Q Consensus 124 ~~~~~--~i~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 200 (390)
+.... ++..+.... ..+....++.-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~ 419 (465)
T TIGR00894 341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNI 419 (465)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 11111 111111222 2344444444455555555544444455567665 4899999999999999999999999988
Q ss_pred cccC--chhHHHHHHHHHHHHHHHHHhhccc
Q 016428 201 KEIA--GWWRICFWVSIVPAAILCLAMVFCA 229 (390)
Q Consensus 201 ~~~~--g~wr~~f~~~~~~~~~~~~~~~~~~ 229 (390)
.+.. +.|+..|.+.++..++..+...+++
T Consensus 420 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 420 LSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred eCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 7653 3488899888777777666554443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=102.00 Aligned_cols=142 Identities=15% Similarity=0.069 Sum_probs=120.8
Q ss_pred hhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhh
Q 016428 89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168 (390)
Q Consensus 89 ~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 168 (390)
..|.+.+...+.-++.-.+..++.+|+|.|+.++++..+.++=.+++++++|.+.+.+.+.+.|+-.+........|+++
T Consensus 260 ~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~ 339 (412)
T PF01306_consen 260 MYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITA 339 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccchhHHHHH-HHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHh-hcccCC
Q 016428 169 VSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFCAES 231 (390)
Q Consensus 169 ~~~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~-~~~~e~ 231 (390)
.+|+|..++...+. +.+.++|..+.+.++|.+.++.| .+..|++.+.+.+...++. +.++++
T Consensus 340 ~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 340 HFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCC
Confidence 99998887777774 68889999999999999999998 7989988776666655544 445443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-10 Score=115.30 Aligned_cols=141 Identities=17% Similarity=0.126 Sum_probs=118.0
Q ss_pred hhhhhccccCCc-chhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 016428 75 ESISLDLGFNGN-TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT 153 (390)
Q Consensus 75 ~~~~~~~~~~~~-~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 153 (390)
+.+.+++|.+.. +. |++.+.+.++..+++++.|+++||+++|+++.++.++.+++.++..+.++.+.++++.++.|+
T Consensus 257 ~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 334 (1146)
T PRK08633 257 AYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF 334 (1146)
T ss_pred HHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344566888766 55 899999999999999999999999999999999988888888888888899989899999999
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc-CchhHHHHHHHHHHH
Q 016428 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPA 218 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-~g~wr~~f~~~~~~~ 218 (390)
+.+...+...+++.+..|+++|++++++.+....+|..+++.+++.+... .+ +...|++.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 399 (1146)
T PRK08633 335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLS-PAGLFYLIALVT 399 (1146)
T ss_pred HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHH
Confidence 99998888889999999999999999999999999988888877766542 23 555665544433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.5e-10 Score=102.08 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=103.3
Q ss_pred hhhhhccccCCcchhhHHHHHHh-HHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHH---Hhh-hhHHHHHHHHH
Q 016428 75 ESISLDLGFNGNTLAEGLVVSMC-LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATT-RNLIGMLLGRF 149 (390)
Q Consensus 75 ~~~~~~~~~~~~~~~~g~~~s~~-~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r~ 149 (390)
+.+.+++|.+.++. |++.+.. ..+..++.++.|++.||+|+|+.+..+..+..+..+.. ++. ++.+.+++.-+
T Consensus 234 ~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 311 (402)
T PRK11902 234 TFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG 311 (402)
T ss_pred HHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 45667788877666 8877655 45678999999999999999998887777666554433 343 45555555443
Q ss_pred ----HHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHh
Q 016428 150 ----VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 150 ----l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~ 225 (390)
..|++.+...+....++.+.+|.+. .+..+...++|..+++.+++.+.+..| |+..|.+.++.+++.++..
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence 4555566666666777777776554 455555566777666778999999988 9999999888777765555
Q ss_pred hcc
Q 016428 226 VFC 228 (390)
Q Consensus 226 ~~~ 228 (390)
+..
T Consensus 387 ~~~ 389 (402)
T PRK11902 387 WLM 389 (402)
T ss_pred HHH
Confidence 433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-10 Score=99.62 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=94.2
Q ss_pred cccchhhhhhccccCCcchhhHHHHHHhH-HHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh----------
Q 016428 70 VNEPLESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---------- 138 (390)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~g~~~s~~~-~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~---------- 138 (390)
.....|.+.+++|.+.++. +.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+.
T Consensus 228 ~~~~~~~~l~~~g~~~~~~--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (356)
T TIGR00901 228 ATVLTTLFLLDMGFSKEEI--ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGIT 305 (356)
T ss_pred HHHHHHHHHHHcCCCHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 3445566666688877665 77777655 5778999999999999999999998888887776655543
Q ss_pred -hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHH
Q 016428 139 -RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC 187 (390)
Q Consensus 139 -~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 187 (390)
++.+.++.+.++.+++.+...+...+++.|.+|+++|++.+++.++..+
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 306 FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 4557777889999999999999999999999999999999999887654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=98.18 Aligned_cols=155 Identities=19% Similarity=0.185 Sum_probs=117.5
Q ss_pred cchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-----hhHHHHHHhHHHHHHHHHHHHhh----hhHH
Q 016428 72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAFQLCALPMIIGASISATT----RNLI 142 (390)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-----Grr~~l~~~~~~~~i~~~~~~~~----~~~~ 142 (390)
...|.+.+++|+++++. ....+...+... ..++.|.++|.+ .||+.++++.++.+++.+..+.. .+..
T Consensus 11 ~~~~~l~~~l~ls~~~~--~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQL--QRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 44677889999998877 566666666655 478999999986 36677777877776666655553 3466
Q ss_pred HHHHHHHHHhhhccchhhhHHHHHhhcCC--CccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHH
Q 016428 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSP--PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (390)
Q Consensus 143 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~ 220 (390)
...+.-++..+|........-+++.|... ++.|+...+.......+|.+++..++|.+.+..+ +|+.|.+.+++..+
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLL 166 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHH
Confidence 66677788888899999999899999873 3347888888889999999999999999999887 79999887766666
Q ss_pred HHHHhhcccC
Q 016428 221 LCLAMVFCAE 230 (390)
Q Consensus 221 ~~~~~~~~~e 230 (390)
..+..+++.|
T Consensus 167 ~~~~~~~~~~ 176 (433)
T PF03092_consen 167 MLIVALFLLE 176 (433)
T ss_pred HHHHHHHhhh
Confidence 5554444333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=98.08 Aligned_cols=135 Identities=18% Similarity=0.268 Sum_probs=100.2
Q ss_pred hhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh-----hhHHHHHHH
Q 016428 74 LES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGMLLG 147 (390)
Q Consensus 74 ~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~ 147 (390)
.|. +.+++|.++.+. +++.+...++..++.++.|++.||+|+|+.+..+..+..++.++.... ++...+++.
T Consensus 229 ~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (385)
T TIGR00710 229 APFVYIDIMGVSPSVF--GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGP 306 (385)
T ss_pred ChHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 344 345778776666 889999999999999999999999999999988888877776666543 234455566
Q ss_pred HHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHH-HHHHHHHHhcccccccCchhHHHHHH
Q 016428 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC-LGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
.++.|++.+...+.......|..| ++|+++.++.+.... .|.+.++.++ .+.+..+ |...+..
T Consensus 307 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~-~~~~~~~ 370 (385)
T TIGR00710 307 MMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTA-WPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccCh-HHHHHHH
Confidence 788899999888888888888886 679999999876654 5667777665 4433333 4444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.4e-10 Score=104.37 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=109.2
Q ss_pred cchhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHh----hhhHHHHHH
Q 016428 72 EPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT----TRNLIGMLL 146 (390)
Q Consensus 72 ~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~l~~ 146 (390)
..+|.+. +.+|.+..+. ++......++..++.++.|++.||+|||+++..+..+.+++..+..+ ..+++.+..
T Consensus 276 ~~~p~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (485)
T TIGR00711 276 YLLPLYLQQVLGYTALQA--GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIAL 353 (485)
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 3456554 4478777666 89999999999999999999999999999999999888888877663 235667777
Q ss_pred HHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccccc
Q 016428 147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (390)
Q Consensus 147 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 203 (390)
..++.|++.+...+.......+..|+++|+++.++.+....+|..+|+.+.+.+.++
T Consensus 354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999988877777788889999999999999999999999999998877664
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-10 Score=96.20 Aligned_cols=124 Identities=21% Similarity=0.224 Sum_probs=92.6
Q ss_pred HHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhH----HHHHHHHHHHhhhccchhhhHHHHHhhcCCCccc
Q 016428 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL----IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR 175 (390)
Q Consensus 100 ~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r 175 (390)
.-.-|.++.+.+.||+|||+.+..+.+++++..+..-.+.+- .+++.+|++.. +.+.+.+.|..|.+|.+.|
T Consensus 393 aefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis----g~fqvaYvYtPEVyPTavR 468 (528)
T KOG0253|consen 393 AEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS----GAFQVAYVYTPEVYPTAVR 468 (528)
T ss_pred hhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh----chheEEEEecCcccchhhh
Confidence 445688999999999999999999999999999887776432 34445676654 3455667899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcccC
Q 016428 176 GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230 (390)
Q Consensus 176 ~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e 230 (390)
+.+.|..+...-+|.++.|+++. ..+.. -..+..+.+...++..+...++|-
T Consensus 469 atgvGtcSsmaRIggI~~p~iA~-~~e~s--~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 469 ATGVGTCSSMARIGGIFSPVIAM-RAELS--TSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hcchhhhhhHHhhhhhhhhHHHH-Hhccc--eeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999999982 22222 123344455555556666666663
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.4e-10 Score=113.81 Aligned_cols=143 Identities=16% Similarity=0.053 Sum_probs=114.2
Q ss_pred chhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh-------------
Q 016428 73 PLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT------------- 138 (390)
Q Consensus 73 ~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~------------- 138 (390)
.+|.+. +.+|.+..+. |++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 247 ~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (1140)
T PRK06814 247 QLPLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKS 324 (1140)
T ss_pred HhHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccc
Confidence 445554 4578776666 999999999999999999999998887777666666666655544443
Q ss_pred -------hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHH
Q 016428 139 -------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (390)
Q Consensus 139 -------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f 211 (390)
++.+.++++.++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++.+.+.....+....+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~ 404 (1140)
T PRK06814 325 ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWII 404 (1140)
T ss_pred hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 6777888889999999999999999999999999999999999999999999999999888864332256666
Q ss_pred HHHHHH
Q 016428 212 WVSIVP 217 (390)
Q Consensus 212 ~~~~~~ 217 (390)
++.+..
T Consensus 405 ~~~~~~ 410 (1140)
T PRK06814 405 LFIALA 410 (1140)
T ss_pred HHHHHH
Confidence 654443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-09 Score=97.98 Aligned_cols=129 Identities=16% Similarity=0.054 Sum_probs=97.8
Q ss_pred chhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh--hHHHHHHHHH
Q 016428 73 PLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRF 149 (390)
Q Consensus 73 ~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~ 149 (390)
..|.+. +.+|.+.... ++......++..++.++++++.||+|+|+++.++.++..++.+...+.+ +++.+++..+
T Consensus 250 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 327 (448)
T PRK09848 250 SSLFYVRYVLNDTGLFT--VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA 327 (448)
T ss_pred hheeeEeeecCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 344333 3455433222 3434444667788999999999999999999999998888877776653 6677777888
Q ss_pred HHhhhccchhhhHHHHHhhcCCCc-------cchhHHHHHHHHHHHHHHHHHHhccccccc
Q 016428 150 VVGTGMGLGPTVAALYVTEVSPPF-------VRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (390)
Q Consensus 150 l~G~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 203 (390)
+.|+|.+...+...++.+|..|.+ ++|...++.+....+|..+|+.+.+.+.+.
T Consensus 328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888653 358889999999999999888887765543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-09 Score=94.66 Aligned_cols=164 Identities=14% Similarity=0.025 Sum_probs=106.8
Q ss_pred HHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhh---HHHHHH-hHHHHHHHHHH
Q 016428 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR---RRAFQL-CALPMIIGASI 134 (390)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Gr---r~~l~~-~~~~~~i~~~~ 134 (390)
..+........+...+|.+.++.|.+.+ . +...++..+...++ .++++||..| |+.... ..++.++....
T Consensus 200 ~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~--~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~ 273 (368)
T TIGR00903 200 ILGFGVALFDNLAIWLEAALRPAGLEDI-A--GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLA 273 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCChH-H--HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333444567877788776643 2 55555555554444 4677777654 443332 34444444444
Q ss_pred HHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHH
Q 016428 135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214 (390)
Q Consensus 135 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~ 214 (390)
.+++.+....++.-.+.|++.....+....+.+|.+|++.|+++.|+.+....+|..++|++.+.+.. + -+..|.+.
T Consensus 274 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~~f~~~ 350 (368)
T TIGR00903 274 LAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEAYFTFL 350 (368)
T ss_pred HHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHHHHHHH
Confidence 45555555555555667777777777788899999999999999999999999999888888876663 4 56677776
Q ss_pred HHHHHHHHHHhhcccCC
Q 016428 215 IVPAAILCLAMVFCAES 231 (390)
Q Consensus 215 ~~~~~~~~~~~~~~~e~ 231 (390)
+++.++..+....++++
T Consensus 351 ~~~~~i~~~~~~~~~~~ 367 (368)
T TIGR00903 351 AILITIAFAIALLLPND 367 (368)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 66666665555444543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.5e-10 Score=99.59 Aligned_cols=123 Identities=27% Similarity=0.344 Sum_probs=104.2
Q ss_pred cccchhhh-hhccccC-CcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh---hhHHHH
Q 016428 70 VNEPLESI-SLDLGFN-GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---RNLIGM 144 (390)
Q Consensus 70 ~~~~~~~~-~~~~~~~-~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~l 144 (390)
.....|.+ .+++|.+ ..+. ++..+...++..++.++.|+++||+|+|+..........++.+...+. ++....
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQA--GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWL 302 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHH
T ss_pred hhcccchhhhhccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45566664 8888887 3444 888999999999999999999999999888888777777777666554 355777
Q ss_pred HHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHH
Q 016428 145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL 194 (390)
Q Consensus 145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 194 (390)
++.-++.|++.+...+....++.|..|+++|+++.++.+....+|..+||
T Consensus 303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 77889999999999999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-08 Score=91.71 Aligned_cols=150 Identities=15% Similarity=0.174 Sum_probs=116.7
Q ss_pred chhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch-hhhHHHHHHhHHHHHHHHHHHHhhhh--------HHH
Q 016428 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRN--------LIG 143 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~ 143 (390)
...++.+.+|.+.+.. ..+...+....-+...++|+++|+ +||++.++++.++..+|.++.+++.. ...
T Consensus 10 LvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 10 LVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 3445556678776665 567777777778889999999996 69999999999999999888876421 234
Q ss_pred HHHHHHHHhhhccchhhhHHHHHhhcCCCc---cchhHHHHHHHHHHHHHHHHHHhccccccc-------CchhHHHHHH
Q 016428 144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPF---VRGTYGAFIQIATCLGLMGSLLIGIPVKEI-------AGWWRICFWV 213 (390)
Q Consensus 144 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~-------~g~wr~~f~~ 213 (390)
.+++-.+..+|.|+.-+...+...|-++++ +|.....+++.+.++|+++++.+.+++.+. .+ |...|.+
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~i 166 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAFGV 166 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHH
Confidence 567778888999999999999999988754 366778888899999999999888877633 24 8889988
Q ss_pred HHHHHHHHHHHh
Q 016428 214 SIVPAAILCLAM 225 (390)
Q Consensus 214 ~~~~~~~~~~~~ 225 (390)
.++..++.++..
T Consensus 167 ~~i~m~ia~lvf 178 (654)
T TIGR00926 167 PAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHH
Confidence 777766665544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=92.49 Aligned_cols=157 Identities=28% Similarity=0.406 Sum_probs=124.5
Q ss_pred HhhhhcccccccchhhhhhccccCCc--chhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh
Q 016428 61 FLFGYHLGVVNEPLESISLDLGFNGN--TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT 138 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~ 138 (390)
+....+........+.+..+++.+.. .. ++..+.+.++..++.++.|.++||+|||+.+..+.....++.+.+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
T COG0477 12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA 89 (338)
T ss_pred HHHHHhcchHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence 33335555666677777777765442 34 899999999999999999999999999988888887766667777777
Q ss_pred hh--HHHHHHHHHHHhhhccchhhhHHHHHhhcCCC-ccchhHHHHHHH-HHHHHHHHHHHhccccccc--CchhHHHHH
Q 016428 139 RN--LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEI--AGWWRICFW 212 (390)
Q Consensus 139 ~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~--~g~wr~~f~ 212 (390)
.+ .+.+++.|+++|++.+...+....++.|+.|+ ++|+...+.... ...+|..+++.+++.+... .+ ||+.|.
T Consensus 90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 168 (338)
T COG0477 90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAFL 168 (338)
T ss_pred ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHH
Confidence 76 89999999999999999999999999999987 678888888888 5778888888777666554 34 899776
Q ss_pred HHHHHHHH
Q 016428 213 VSIVPAAI 220 (390)
Q Consensus 213 ~~~~~~~~ 220 (390)
+.......
T Consensus 169 ~~~~~~~~ 176 (338)
T COG0477 169 LAALLGLL 176 (338)
T ss_pred HHHHHHHH
Confidence 65555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-09 Score=97.25 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=115.9
Q ss_pred HHHHHHHhhhhcccccccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~ 133 (390)
.+....++........+...+.+.++ ++.+ +.. +.+..++.++..++.+++++++||+|+|+++..+..+.+++.+
T Consensus 229 ~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~--~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 229 ILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLI--SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL 305 (428)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence 34444555555555555566665555 3332 333 7888899999999999999999999999999999999999999
Q ss_pred HHHhhh--hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCC-------ccchhHHHHHHHHHHHHHHHHHHhccccccc
Q 016428 134 ISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-------FVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (390)
Q Consensus 134 ~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 203 (390)
+..+.+ |.+.+++.-++.|++.+...+...++++|..+. ++.|...+..+...-+|..+++.+.+.+.+.
T Consensus 306 ~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 306 LLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred HHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 988886 999999999999999999999999999998873 3357788888888888888888877665443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-09 Score=100.98 Aligned_cols=128 Identities=13% Similarity=0.021 Sum_probs=107.8
Q ss_pred chhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh---hhHHHHHHHH
Q 016428 73 PLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---RNLIGMLLGR 148 (390)
Q Consensus 73 ~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~r 148 (390)
..|. +++.+|.+..+. |+....+.++..++.++.|++.||+|+|+.+..+.++.+++.++.... ++.+...+..
T Consensus 281 ~~~~~lq~v~g~s~~~a--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (495)
T PRK14995 281 LMAQELQFVHGLSPLEA--GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLM 358 (495)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4443 445578777666 899999999999999999999999999999998988888777655432 4566667788
Q ss_pred HHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 016428 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 202 (390)
++.|++.|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus 359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888999999999999999999999999999999887754
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-09 Score=97.01 Aligned_cols=115 Identities=15% Similarity=0.054 Sum_probs=88.9
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHh--hhhHHHHHHHHHHHhhhccchhhhHHHHHhh
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 168 (390)
+.+.....++..++.+++++++||+|+|+.+..+.++.++......+ .++.+.+++..++.|++.+...+...++++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677888889999999999999999999888766654443322 3567777888899999999999999999998
Q ss_pred cCCC-------ccchhHHHHHHHHHHHHHHHHHHhcccccccCc
Q 016428 169 VSPP-------FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (390)
Q Consensus 169 ~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g 205 (390)
..+. ++.|...+..+....+|..+|+.+++.+.+..|
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8752 234566788888888898888888877665443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-08 Score=93.10 Aligned_cols=174 Identities=19% Similarity=0.158 Sum_probs=112.2
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~ 132 (390)
...+.+..+.............+.+.+..|.+.+.. +...+..+...++..+...+.||+|||+.++.+...+.++.
T Consensus 297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~---~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~ 373 (513)
T KOG0254|consen 297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTF---LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICL 373 (513)
T ss_pred HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHH
Confidence 334444445555555666777888888888765532 44555666667788888999999999999999999999999
Q ss_pred HHHHhhhhH-------------HHHH-HHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcc
Q 016428 133 SISATTRNL-------------IGML-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI 198 (390)
Q Consensus 133 ~~~~~~~~~-------------~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 198 (390)
++.+..... ..+. .+-++..+..| ..+....+.+|.+|.+.|+++.++......+...+-.....
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g-~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~ 452 (513)
T KOG0254|consen 374 VILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG-WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP 452 (513)
T ss_pred HHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc-cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 988754211 1112 22233333333 34566678899999999999999988777666554444433
Q ss_pred cccccCchhHHHHHHHHHHHHH-HH-HHhhcccCC
Q 016428 199 PVKEIAGWWRICFWVSIVPAAI-LC-LAMVFCAES 231 (390)
Q Consensus 199 ~l~~~~g~wr~~f~~~~~~~~~-~~-~~~~~~~e~ 231 (390)
.+.+..+ +...|...+..+.+ .. ...+++||+
T Consensus 453 ~~~~~~~-~~~~f~~f~~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 453 FITEALG-IGGTFGYFGGICLLSLIIFVFFFVPET 486 (513)
T ss_pred HHHHhcc-ccchHHHHHHHHHHHHHHHheEEcccC
Confidence 3333322 23445543333333 33 355678998
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.4e-09 Score=93.84 Aligned_cols=136 Identities=13% Similarity=0.023 Sum_probs=106.4
Q ss_pred hhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhc
Q 016428 76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGM 155 (390)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 155 (390)
.+.+.+|.++.+. |++.+.+.++..++++..+++.||.++|+++..+. +.++...+.++.++++...+.-++.|++.
T Consensus 231 ~~~~~lg~s~~~~--G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 307 (393)
T PRK11195 231 WAPVALGITLNQP--AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALG 307 (393)
T ss_pred HHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 3455678777666 99999999999999999999999999998888775 44455555666778887778888999999
Q ss_pred cchhhhHHHHHhhcCCCcc-chhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHH
Q 016428 156 GLGPTVAALYVTEVSPPFV-RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (390)
Q Consensus 156 g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~ 216 (390)
+...+...+.+.|..|++. +|++.++.+....+|..++..+.+.+.. .| -|..+.+.+.
T Consensus 308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 367 (393)
T PRK11195 308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK-LG-VPVVAVIVGF 367 (393)
T ss_pred hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH-cC-CCHHHHHHHH
Confidence 9888888888888766654 7999999999999999999988886643 33 3444444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=94.92 Aligned_cols=112 Identities=9% Similarity=0.027 Sum_probs=88.3
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhccchhhhHHHH
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALY 165 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 165 (390)
+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+ .++.+.+++.-++.|++.+...+...++
T Consensus 269 ~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am 348 (473)
T PRK10429 269 PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIM 348 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888999999999999999999999888876666555432 3456677777888999999999888999
Q ss_pred HhhcCC-------CccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 016428 166 VTEVSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 166 i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 202 (390)
++|..+ .++.|...+......-+|..+++.+.+.+.+
T Consensus 349 ~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 349 VADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999865 3334557888888888888888887776654
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-08 Score=92.34 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=85.4
Q ss_pred hhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHH---Hhh-hhHHHHHHHHHHH
Q 016428 76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATT-RNLIGMLLGRFVV 151 (390)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r~l~ 151 (390)
.+.+++|.+..+. |++.+...++..++.++.|++.||+|||+.+..+..+..+..+.. ... .+++...++-.+.
T Consensus 220 ~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (377)
T PRK11102 220 VYIELNGVSPQNF--GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAF 297 (377)
T ss_pred HHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3456678776665 899999999999999999999999999999988877654433322 222 2455555555455
Q ss_pred hhhccchhhhHHHHHhhcCCCccchhHHHHHHHH-HHHHHHHHHHhccc
Q 016428 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA-TCLGLMGSLLIGIP 199 (390)
Q Consensus 152 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~ 199 (390)
+.+.+........++.|..| ++|+++.++.... ..+|..+++++++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 298 VGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555666777765 7899999887653 56778888877654
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-07 Score=83.23 Aligned_cols=284 Identities=8% Similarity=-0.012 Sum_probs=160.0
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCc---chhhHHHHHHhHHHHHHH-HHhHHHhhchhhhHHHHHHhHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGN---TLAEGLVVSMCLGGAFIG-STLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~s~~~~~~~i~-~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
++...+..|+..++.... -++.+.+..+.. .....++-+...+..++. .++.+++++|++|++++......+
T Consensus 9 ~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F 84 (472)
T TIGR00769 9 FLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPF 84 (472)
T ss_pred HHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHH
Confidence 444444445544554433 345555554211 112378888877766666 899999999999999998887777
Q ss_pred HHHHHHHHhh--h-----------------------------hHHHHHHHHHHHhhhccchhh-hHHHHHhhcCCCccch
Q 016428 129 IIGASISATT--R-----------------------------NLIGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPFVRG 176 (390)
Q Consensus 129 ~i~~~~~~~~--~-----------------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~ 176 (390)
.....++++. + +.|...+..+...+-.....+ ....+.+|.++.++-.
T Consensus 85 ~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qak 164 (472)
T TIGR00769 85 LGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAK 164 (472)
T ss_pred HHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 7766666554 1 122223333444444444554 6678999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccc-------cCchhH----HHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHH
Q 016428 177 TYGAFIQIATCLGLMGSLLIGIPVKE-------IAGWWR----ICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE 245 (390)
Q Consensus 177 ~~~~~~~~~~~~G~~~~~~~~~~l~~-------~~g~wr----~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~ 245 (390)
|..++++.+.++|.++++.+..++.+ ..+.|. ..+.+.++.+.+...+..++.+.. ..+++..+.+
T Consensus 165 Rfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~ 241 (472)
T TIGR00769 165 RFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRSYNPA 241 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccccchh
Confidence 99999999999999999988777662 222252 233333333333333333332110 0000000000
Q ss_pred HHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCC---
Q 016428 246 AEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS--- 322 (390)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 322 (390)
+.+++++.+.....+.+.++++|..+...+...++.......... +-.......+..
T Consensus 242 -----------------~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~---~k~~v~~~~p~~~~~ 301 (472)
T TIGR00769 242 -----------------LKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVT---WKSKLKAQYPSPNEY 301 (472)
T ss_pred -----------------hccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHH
Confidence 000111122233456777888887776665555554443222221 222222222211
Q ss_pred ---chHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 016428 323 ---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 363 (390)
Q Consensus 323 ---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 363 (390)
.+......++..++..++.+++.+|+|-+....+.-++..+
T Consensus 302 ~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 302 SAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12245556666667777779999999987766654444444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-09 Score=95.77 Aligned_cols=131 Identities=11% Similarity=0.107 Sum_probs=87.2
Q ss_pred hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhcc
Q 016428 77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG 156 (390)
Q Consensus 77 ~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 156 (390)
+.+++|.+.++. +.+.+.+.++..++.++.+++.||+|||+++..+..+..++.++..+.++....+..-.+.+.+.+
T Consensus 230 ~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 307 (392)
T PRK10473 230 LMEQMGFSRGEY--AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFS 307 (392)
T ss_pred HHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778776655 888888999999999999999999999999999999888888888777665544444444444444
Q ss_pred chhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHH
Q 016428 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215 (390)
Q Consensus 157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~ 215 (390)
...+. ....+..|.++|+ +..+....++..+++.+++++.+..| +.....+.+
T Consensus 308 ~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g-~~~~~~~~~ 360 (392)
T PRK10473 308 VGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG-ISAWNMLIG 360 (392)
T ss_pred HHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHH
Confidence 43333 2334455554443 33334445566666666666666555 444333333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-09 Score=92.71 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=116.0
Q ss_pred ccchh-hhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh-------hHH
Q 016428 71 NEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-------NLI 142 (390)
Q Consensus 71 ~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~-------~~~ 142 (390)
+..+| .+.++|+.++.+. |.....+.+...+..+.+|+++||+|.++++......++++..+.++.+ +..
T Consensus 238 s~~l~~~~~~~fg~~~~~A--g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~ 315 (417)
T COG2223 238 SAYLPMYLVTQFGLSPVTA--GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFV 315 (417)
T ss_pred HHHHHHHHHHhcCCChhhH--HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchH
Confidence 34444 3677899888777 8899999999999999999999999999999999999988888877663 333
Q ss_pred ----HHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHH
Q 016428 143 ----GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA 218 (390)
Q Consensus 143 ----~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~ 218 (390)
.++...++.|+|.|..+ .++..++|+ +-|.+.|+......+|...-|..-+...+..|.++..|++.....
T Consensus 316 ~~~~~~l~l~~~~G~GnGsvf----k~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~ 390 (417)
T COG2223 316 VFVAVFLALFVFAGLGNGSVF----KMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFY 390 (417)
T ss_pred HHHHHHHHHHHHhccCcchhe----eechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34445666666666554 667777754 679999999999999988888887777777666899998877777
Q ss_pred HHHHHHhh
Q 016428 219 AILCLAMV 226 (390)
Q Consensus 219 ~~~~~~~~ 226 (390)
+++.+..+
T Consensus 391 ~~a~v~~~ 398 (417)
T COG2223 391 LVALVLTW 398 (417)
T ss_pred HHHHHHHH
Confidence 76666543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=93.76 Aligned_cols=135 Identities=14% Similarity=0.019 Sum_probs=105.0
Q ss_pred hhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccc
Q 016428 78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL 157 (390)
Q Consensus 78 ~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~ 157 (390)
.+.+|.++.+. ++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.++.. .+..-.+.|++.+.
T Consensus 287 ~~~~g~s~~~a--g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~ 363 (438)
T PRK10133 287 EEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSI 363 (438)
T ss_pred hhcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHH
Confidence 45678877776 8999999999999999999999999999999998888777776666666542 34566789999999
Q ss_pred hhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHH
Q 016428 158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP 217 (390)
Q Consensus 158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~ 217 (390)
.+|...+...|..|+ +.+.+.++..+ ..+|..++|.+.+.+.+..|.-|..|++..+.
T Consensus 364 i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~ 421 (438)
T PRK10133 364 QYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_pred HHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999998865 46777777764 44677778888888877664236676654333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.3e-08 Score=82.53 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=124.7
Q ss_pred ccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-hhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016428 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRNLIGMLLGRF 149 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 149 (390)
-.-+|.+..|-|+|..+. |++.+...+.....++....+.+|. .+|+..+....++.++.+.+.+.+......- -+
T Consensus 228 ~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~ 304 (395)
T COG2807 228 IGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-AL 304 (395)
T ss_pred HHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HH
Confidence 345799999999998888 9999999999999999999999964 6788888888888888888878765544444 49
Q ss_pred HHhhhccchhhhHHHHHhhcCC-CccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhc
Q 016428 150 VVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227 (390)
Q Consensus 150 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~ 227 (390)
+.|+|.|..++.....+.+..+ +++-++..++.+....+=...||.+.|++.|..|+|+......+...++..+.-+.
T Consensus 305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998775 44556667777766666678899999999999888999888776666665554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-08 Score=91.79 Aligned_cols=135 Identities=15% Similarity=0.012 Sum_probs=107.0
Q ss_pred hHHHHHHhHHHHHHHHHhHHHhhchhhh-----HHHH--HHhHHHHHHHHHHHHh---------hhhHHHHHHHHHHHhh
Q 016428 90 EGLVVSMCLGGAFIGSTLSGWIADGVGR-----RRAF--QLCALPMIIGASISAT---------TRNLIGMLLGRFVVGT 153 (390)
Q Consensus 90 ~g~~~s~~~~~~~i~~~~~g~l~d~~Gr-----r~~l--~~~~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~ 153 (390)
.+++.+...+...+.+++..++-.+.+| +... .+|.++.+++....++ ..|++++++..++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 3688888888888888876544333333 3433 7788888888777764 4689999999999999
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHh
Q 016428 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~ 225 (390)
|.....|....++.|..|++.|++++|++.....+|..+++.+........+ |.+.|...++..++..+..
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988887766656 7878777666555554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-08 Score=91.01 Aligned_cols=129 Identities=11% Similarity=0.025 Sum_probs=97.4
Q ss_pred chhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHH---Hh--hhhHHHHHHH
Q 016428 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---AT--TRNLIGMLLG 147 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~---~~--~~~~~~l~~~ 147 (390)
..|.+.+++|.+.++. |+....+.++..++.+..+++.||+|+|+.+.......+++.+.. .. .++...+++.
T Consensus 225 ~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (401)
T PRK11043 225 GSPFILEQMGYSPADI--GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP 302 (401)
T ss_pred HhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3566777788876665 887788888889999999999999999987766655554443332 22 3455666666
Q ss_pred HHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC
Q 016428 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204 (390)
Q Consensus 148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 204 (390)
-.+.|++.+...+.......|..| ++|+++.++.+.....+...++.+.+.+.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP 358 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 778888888888888777777775 57999999999887777778888877777644
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=92.35 Aligned_cols=134 Identities=15% Similarity=-0.015 Sum_probs=92.0
Q ss_pred HHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHH-hh-----hhHHHHHHHHHHHhhhccchhhhHHHHHh
Q 016428 94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-TT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVT 167 (390)
Q Consensus 94 ~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~-~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 167 (390)
..+..+...+..+++|+++||+|+|+++.++.+...++..... .. .+++.+.+.-+...++.|........++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 3344567788899999999999999999998887777664322 11 24555555554444445555555567777
Q ss_pred hcCCC---------------------ccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhh
Q 016428 168 EVSPP---------------------FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226 (390)
Q Consensus 168 ~~~~~---------------------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~ 226 (390)
+++|+ ++-|.+.|+......+|..+.|.+-+...+..|.+...|+...+.-++++++.+
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 77764 145677888888888888888877666666655588888877766666655544
Q ss_pred c
Q 016428 227 F 227 (390)
Q Consensus 227 ~ 227 (390)
+
T Consensus 452 ~ 452 (462)
T PRK15034 452 L 452 (462)
T ss_pred H
Confidence 3
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-09 Score=92.78 Aligned_cols=178 Identities=17% Similarity=0.083 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhh------HHHHHHh-HHHHHHHHHhHHHhhchhhhHHHHHH
Q 016428 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE------GLVVSMC-LGGAFIGSTLSGWIADGVGRRRAFQL 123 (390)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~s~~-~~~~~i~~~~~g~l~d~~Grr~~l~~ 123 (390)
+.++..+...|+........+.....+.+..++.+++... .-...+. ..++.-|..+...++|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4566677777777777777777788888887775544321 1111111 22333466677789999999999999
Q ss_pred hHHHHHHHHHHHHhhhh----HHHHHH----HHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHH
Q 016428 124 CALPMIIGASISATTRN----LIGMLL----GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL 195 (390)
Q Consensus 124 ~~~~~~i~~~~~~~~~~----~~~l~~----~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 195 (390)
+.+++++..+..+...| -..+++ ..++.-+|-+ .....+.+|.+|.+.|+..-|+.....-.|+++|..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999999988766 122222 2333333322 233466799999999999999999999999999999
Q ss_pred hcccccc-----cCchhHHHHHHHHHHHHHHHHHhhcccCCh
Q 016428 196 IGIPVKE-----IAGWWRICFWVSIVPAAILCLAMVFCAESP 232 (390)
Q Consensus 196 ~~~~l~~-----~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p 232 (390)
.-.++.+ ..+ -|+.+++.+...++..+..+++||+.
T Consensus 461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeeccc
Confidence 9888888 556 79999999999988888889999983
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-08 Score=88.23 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=101.6
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch----hhhHHHHHH-hHHHH
Q 016428 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQL-CALPM 128 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~----~Grr~~l~~-~~~~~ 128 (390)
+.+....+-..+....-....+++..+.|++..-. +.+--.--+...+.+++.|..+|| ||||+.++. +.+..
T Consensus 35 i~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i 112 (498)
T KOG0637|consen 35 ISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLI 112 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHHH
Confidence 33333344444444444556777888889876555 555555566677889999999995 898877665 45556
Q ss_pred HHHHHHHHhhhhHH-----------------HHHHHHHHHhhhccchhhhHHHHHhhcCCCccchh-HHHHHHHHHHHHH
Q 016428 129 IIGASISATTRNLI-----------------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGT-YGAFIQIATCLGL 190 (390)
Q Consensus 129 ~i~~~~~~~~~~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~ 190 (390)
+++.++.+++.++. .++++--+.=++.-.....+-++++|...++++.+ +++++.....+|.
T Consensus 113 ~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGn 192 (498)
T KOG0637|consen 113 AVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGN 192 (498)
T ss_pred HHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcc
Confidence 67777777765543 33333344445555677788899999997766666 9999999999999
Q ss_pred HHHHHhccccc
Q 016428 191 MGSLLIGIPVK 201 (390)
Q Consensus 191 ~~~~~~~~~l~ 201 (390)
.+|...+++..
T Consensus 193 vLGY~~g~y~~ 203 (498)
T KOG0637|consen 193 VLGYALGSYLG 203 (498)
T ss_pred eeeeecccccC
Confidence 99999887443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=87.84 Aligned_cols=169 Identities=17% Similarity=0.099 Sum_probs=126.1
Q ss_pred HHHHHHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhh--hHHHHHHhHHHHHH
Q 016428 54 LVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMII 130 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~~i 130 (390)
.++..............-|.++. +.|.+..+.-+. |+..--..+.+.++..+.|.++||++ |-.....+++..++
T Consensus 273 ~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~--G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~ 350 (464)
T KOG3764|consen 273 LLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEV--GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGV 350 (464)
T ss_pred hhhhcchhhccchHHHhCcccHHHHHHhccCCCcce--eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 33334344445555566777766 566666333244 66666678899999999999999999 65555566777777
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCc------cchhHHHHHHHHHHHHHHHHHHhcccccccC
Q 016428 131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF------VRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204 (390)
Q Consensus 131 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 204 (390)
......+++++.++.+-++..|++.+...........+..+.+ .-|...++...++++|..+||.+++.+.+..
T Consensus 351 ~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i 430 (464)
T KOG3764|consen 351 SSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI 430 (464)
T ss_pred HhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh
Confidence 7777889999999999999999888877666655555555433 3467889999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHh
Q 016428 205 GWWRICFWVSIVPAAILCLAM 225 (390)
Q Consensus 205 g~wr~~f~~~~~~~~~~~~~~ 225 (390)
| ++|.-.+.++..++-.-+.
T Consensus 431 G-F~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 431 G-FEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred h-HHHHHHHHHHHHHHHHHHH
Confidence 9 8998888777776654443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-08 Score=90.79 Aligned_cols=150 Identities=11% Similarity=0.010 Sum_probs=117.9
Q ss_pred hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHh----------hhhHHHHHHHH
Q 016428 79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT----------TRNLIGMLLGR 148 (390)
Q Consensus 79 ~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~----------~~~~~~l~~~r 148 (390)
+.+|.++.+. |.+.....++..++....+++.+|++.|+++.++.++.+++.+.... .++.+..+..-
T Consensus 281 ~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 281 QCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred ccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 5678877777 99999999999999999999999999999999999999888755431 13444455667
Q ss_pred HHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc-----h-hHHHHHH-HHHHHHHH
Q 016428 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-----W-WRICFWV-SIVPAAIL 221 (390)
Q Consensus 149 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g-----~-wr~~f~~-~~~~~~~~ 221 (390)
++.+++.+........++.+..|++.++...++..+..++|..+++.+++.+.+..| . .++...+ ..+..++.
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~ 438 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP 438 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence 889999999888999999999999999999999999999999999999888876554 1 2333332 33444444
Q ss_pred HHHhhcccC
Q 016428 222 CLAMVFCAE 230 (390)
Q Consensus 222 ~~~~~~~~e 230 (390)
+...+++|+
T Consensus 439 l~~~~llP~ 447 (468)
T TIGR00788 439 LPLLHLLPR 447 (468)
T ss_pred HHHHHhCCC
Confidence 444456785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=88.77 Aligned_cols=132 Identities=9% Similarity=0.009 Sum_probs=100.0
Q ss_pred HHHHHHhHHHHHHHHHhH----HHhhchhhhHHHHHHhHHHHHHHHHHHHhhhh---------HHHHHHHHHHHhhhccc
Q 016428 91 GLVVSMCLGGAFIGSTLS----GWIADGVGRRRAFQLCALPMIIGASISATTRN---------LIGMLLGRFVVGTGMGL 157 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~----g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~---------~~~l~~~r~l~G~~~g~ 157 (390)
++..+...+...+..++. +++.||++.++.+.+|.++.+++.+..++..+ .++++..++++|+|+..
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 566677665555665555 77777777888899999999999888777655 46788899999999999
Q ss_pred hhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc------c----cCchhHHHHHHHHHHHHHHHH
Q 016428 158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK------E----IAGWWRICFWVSIVPAAILCL 223 (390)
Q Consensus 158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~------~----~~g~wr~~f~~~~~~~~~~~~ 223 (390)
..|....++.+..|++.||+++|.+.....+|..++..+..... + ..+ .++.|...++.+++..+
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~a~ 473 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEV-YGRVFLQIGIATAVIAV 473 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhh-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888776665553111 0 112 46777766665554433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.79 E-value=9e-08 Score=87.47 Aligned_cols=140 Identities=10% Similarity=-0.103 Sum_probs=101.2
Q ss_pred ccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016428 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV 150 (390)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 150 (390)
...++.+.++.+.+.+....+...+.+..+..+|.++.+++.||+++|+++.++..+..+..++..+.++... ..+-++
T Consensus 252 ~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~ 330 (410)
T TIGR00885 252 WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTL 330 (410)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 3445555555433322222244566677888999999999999999999999999998888888888777544 566778
Q ss_pred HhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC-----chhHHHHHH
Q 016428 151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA-----GWWRICFWV 213 (390)
Q Consensus 151 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~-----g~wr~~f~~ 213 (390)
.|++.+..+|...++..+..+++.+ .+.+...++ .+|..+.|++.|.+.|.. |+.+..|++
T Consensus 331 ~glf~s~~fp~i~sl~~~~~g~~~~-~~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~ 396 (410)
T TIGR00885 331 CSAFMSLMFPTIYGIALKGLGQDTK-YGAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFIL 396 (410)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHH
Confidence 8888888899999999999876543 333333333 389999999999999853 225666665
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-07 Score=83.25 Aligned_cols=140 Identities=15% Similarity=0.150 Sum_probs=99.9
Q ss_pred HHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh
Q 016428 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT 138 (390)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~ 138 (390)
..++.....+..+....++ -+++++.++....+.......+..++.+++.++++|+|+|+++.++.++..++.++.-+.
T Consensus 244 ~~l~~~~~~~i~~s~~~yy-~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~ 322 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYY-VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT 322 (467)
T ss_pred HHHHHHHHHHHHhhhhhee-EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333443333 344566666655677778888888889999999999999999999999999999988877
Q ss_pred h--hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCC-------ccchhHHHHHHHHHHHHHHHHHHhccc
Q 016428 139 R--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-------FVRGTYGAFIQIATCLGLMGSLLIGIP 199 (390)
Q Consensus 139 ~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~ 199 (390)
+ +....++..++.+++.+...+...++++|..+- |+-|...+......=+|..++..+.++
T Consensus 323 ~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 323 PAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred cCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 788888899999999999999999999887652 222445555555555555555544433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.2e-08 Score=88.02 Aligned_cols=170 Identities=15% Similarity=0.067 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhhhhcccccccchhhhhh-ccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhh---------HHHH
Q 016428 52 HVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR---------RRAF 121 (390)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Gr---------r~~l 121 (390)
.++.++++.+...+....+...+|.+.+ -+|.+..+. |++.++..+...+..+++|.++||.-+ |..-
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~--G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRET--GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHH
Confidence 4667777788888877777777786655 578888877 999999999999999999999998744 4444
Q ss_pred HHhHHHHHHHHHHHHhhhh--H----HHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHH
Q 016428 122 QLCALPMIIGASISATTRN--L----IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL 195 (390)
Q Consensus 122 ~~~~~~~~i~~~~~~~~~~--~----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 195 (390)
.++....+++.+..++.++ . ..+.++-.+.|+..++.. .-..|.. +++-+..+|+.+....+..+++|.
T Consensus 337 ~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~ 411 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFY----KNHQDIA-PQHAGFVMGIINFVGALAGFIAPL 411 (466)
T ss_pred hHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhH----hhhhhcc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666653 1 111122233333333222 2223334 567899999999999999999999
Q ss_pred hcccccccC--chhHHHHHHHHHHHHHHHHHhhcc
Q 016428 196 IGIPVKEIA--GWWRICFWVSIVPAAILCLAMVFC 228 (390)
Q Consensus 196 ~~~~l~~~~--g~wr~~f~~~~~~~~~~~~~~~~~ 228 (390)
+.+.+.+.. ..||++|++.+++.++..+...++
T Consensus 412 ~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 412 LVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred heeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 999998522 249999999888887776555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-07 Score=84.65 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=92.8
Q ss_pred hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHH-HHHHHHHHHh--hhhHHHHHHHHHHHhh
Q 016428 77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP-MIIGASISAT--TRNLIGMLLGRFVVGT 153 (390)
Q Consensus 77 ~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~-~~i~~~~~~~--~~~~~~l~~~r~l~G~ 153 (390)
+.+.+|.+..+. +++.....++..++.++.+++.||+|++......... ..+....... ..+.+.+++..++.|+
T Consensus 234 ~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (394)
T PRK11652 234 MGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFF 311 (394)
T ss_pred HHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 334477766655 8888888889999999999999999844433222222 2222222222 2356677788899999
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC
Q 016428 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 204 (390)
+.+...+....+..|.+| ++++...++.+....+|..+++.+++.+....
T Consensus 312 g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 312 GAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 999999999999999886 57899999999999999999999988877654
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.8e-08 Score=65.69 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=73.8
Q ss_pred hhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHH
Q 016428 63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI 142 (390)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 142 (390)
.+..+..+.|.+|.+++|.++|.++. ||+.+...+||.+|.+...++.++..+++.+..+++...+..+.+++.++++
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 45677788999999999999999888 9999999999999999999999999999999999999999999999998877
Q ss_pred HH
Q 016428 143 GM 144 (390)
Q Consensus 143 ~l 144 (390)
..
T Consensus 82 ~w 83 (85)
T PF06779_consen 82 LW 83 (85)
T ss_pred HH
Confidence 54
|
Note that many members are hypothetical proteins. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-08 Score=87.84 Aligned_cols=162 Identities=22% Similarity=0.155 Sum_probs=132.9
Q ss_pred HhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhh
Q 016428 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN 140 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~ 140 (390)
++.+.....+...+=.-.||.+-.+.-. |.....-..+-.+.-++.+++.+++|+-+++..++.+..+=.+..+..+|
T Consensus 381 v~mG~g~~lv~tFLfWHled~~~~~~Lf--Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n 458 (618)
T KOG3762|consen 381 VVMGAGVGLVFTFLFWHLEDLGGIKTLF--GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN 458 (618)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcceee--eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC
Confidence 3334443333333444566776443333 76677777788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHH-HHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHH
Q 016428 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219 (390)
Q Consensus 141 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~ 219 (390)
.|..+...+++|+..+..+.+..+|+++..||+.|..+.++.. ...++|-.+|.++||.+.+..+ =|..|.+.++.++
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl 537 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACL 537 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 4678899999999999999988 5888888777776
Q ss_pred HHHHHh
Q 016428 220 ILCLAM 225 (390)
Q Consensus 220 ~~~~~~ 225 (390)
+.++..
T Consensus 538 ~~l~~~ 543 (618)
T KOG3762|consen 538 VTLALF 543 (618)
T ss_pred HHHHHH
Confidence 655544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-05 Score=72.23 Aligned_cols=105 Identities=13% Similarity=-0.065 Sum_probs=89.0
Q ss_pred HHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCc
Q 016428 94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF 173 (390)
Q Consensus 94 ~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 173 (390)
.++....+.+++++.+.+.|+.|.|+.++++........+..-+- |-+.++++-.+.|+|.+..+..-..|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 666777888999999999999999999999999988877666444 5666888999999999999988889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccc
Q 016428 174 VRGTYGAFIQIATCLGLMGSLLIGIP 199 (390)
Q Consensus 174 ~r~~~~~~~~~~~~~G~~~~~~~~~~ 199 (390)
.+.+..++.-.....+.++|..+-..
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhhee
Confidence 99999998888777777777655433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.9e-08 Score=86.72 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=81.9
Q ss_pred cchhhh-hhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHh--hh--hHHHHHH
Q 016428 72 EPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TR--NLIGMLL 146 (390)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~--~~--~~~~l~~ 146 (390)
...|.+ .+.+|.+..+. +++.+.+.++..++.++.|+++||+|||+.+..+......+..+..+ .+ +...+.+
T Consensus 246 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
T TIGR00886 246 SIFAMFFKDQFGLSKVTA--GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV 323 (366)
T ss_pred HHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 334444 45678777666 88888999999999999999999999998888777766666555543 22 5555545
Q ss_pred HHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHH
Q 016428 147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG 189 (390)
Q Consensus 147 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 189 (390)
.-.+.+++.|...+....++.|..| ++++++.|+.+....+|
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 5555555555555556677788876 68999999988766544
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-06 Score=79.68 Aligned_cols=111 Identities=16% Similarity=0.020 Sum_probs=72.1
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhccchhhhHHHHHhh
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTE 168 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 168 (390)
+++.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...++++|
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad 345 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD 345 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888899999999999999999988765554444333333322 23334455566788777777666777777
Q ss_pred cCC-------CccchhHHHHHHHHHHHHHHHHHHhccccc
Q 016428 169 VSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (390)
Q Consensus 169 ~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 201 (390)
..+ .++.|...+......-+|..+++.+++.+.
T Consensus 346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 222244455555566666666665555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=82.33 Aligned_cols=135 Identities=10% Similarity=0.003 Sum_probs=101.5
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhHHH-------HHHhHHHHHHHHHHHH-----hh-----hhHHHHHHHHHHHhh
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRA-------FQLCALPMIIGASISA-----TT-----RNLIGMLLGRFVVGT 153 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~-------l~~~~~~~~i~~~~~~-----~~-----~~~~~l~~~r~l~G~ 153 (390)
+++.+...+...+..++.+++.||+|+|+. +.+|+++.+++.+..+ ++ .++++++..-+++|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 466777777788899999999999999973 6677777766654321 21 357778888999999
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc---------cCchhHHHHHHHHHHHHHHHHH
Q 016428 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---------IAGWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---------~~g~wr~~f~~~~~~~~~~~~~ 224 (390)
|.+...+....++.+..|++.++.+++++.....+|..++..++..... ..+...+.|...++..+++.++
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~ 471 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV 471 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888877754421 0111456666665555554444
Q ss_pred h
Q 016428 225 M 225 (390)
Q Consensus 225 ~ 225 (390)
.
T Consensus 472 ~ 472 (489)
T PRK10207 472 M 472 (489)
T ss_pred H
Confidence 3
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-06 Score=81.46 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=100.2
Q ss_pred HHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHH---HHHHHHHHhhhccchhhhHHHHHhh
Q 016428 92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG---MLLGRFVVGTGMGLGPTVAALYVTE 168 (390)
Q Consensus 92 ~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~---l~~~r~l~G~~~g~~~~~~~~~i~~ 168 (390)
.................+.+.|++|||.....+.++..++.+..++..+... ..+...+..++.+..+.....+.+|
T Consensus 354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 433 (521)
T KOG0255|consen 354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAE 433 (521)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455556666689999999999999999999999999998865443 5555566666666666677889999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcccCCh
Q 016428 169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP 232 (390)
Q Consensus 169 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p 232 (390)
.+|...|..+.+.......+|.+++|.+..........+.... ......+...+...++||+.
T Consensus 434 l~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~lpet~ 496 (521)
T KOG0255|consen 434 LIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL-FGWLALLLGLLSLLLLPETK 496 (521)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999999988755544221122222 12233333344447889984
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6e-07 Score=78.22 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhhhhcccccccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHH
Q 016428 52 HVLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII 130 (390)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i 130 (390)
.+..-.++.|+.--........++.+.++ .|+++.+. +...+.+..+..+|.++..++..|+...|++.+..++..+
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~a--a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~il 314 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQA--AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAIL 314 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34455556666655666666677777666 67766666 7889999999999999999999999999999999988888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHH
Q 016428 131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (390)
Q Consensus 131 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~ 210 (390)
..+..+++++...+ .+-++.|+..+..+|...+...+..| + .....+..-....+|..+.|.+-|++.+..| -+..
T Consensus 315 l~~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~~ 390 (422)
T COG0738 315 LLLAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQLT 390 (422)
T ss_pred HHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhhh-hHHH
Confidence 88888888885443 45678888999999999999999998 3 3444444445566788888889999999887 3555
Q ss_pred HHHHHHHHHH
Q 016428 211 FWVSIVPAAI 220 (390)
Q Consensus 211 f~~~~~~~~~ 220 (390)
+.+...++.+
T Consensus 391 ~~~~pllc~l 400 (422)
T COG0738 391 FLIVPLLCYL 400 (422)
T ss_pred HHHHHHHHHH
Confidence 5533333333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-06 Score=65.16 Aligned_cols=107 Identities=17% Similarity=0.090 Sum_probs=90.4
Q ss_pred HHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCC
Q 016428 93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172 (390)
Q Consensus 93 ~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 172 (390)
-.++......+++++.+.+.+++|.|+.+++|.+...+-... -+-++.+.++.+-++.|++.+..++....++.+..++
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 355566667888899999999999999999999998865444 3567888999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhcccc
Q 016428 173 FVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (390)
Q Consensus 173 ~~r~~~~~~~~~~~~~G~~~~~~~~~~l 200 (390)
++|++-.+++......+.++|.++.-.+
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888777665433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.3e-06 Score=72.13 Aligned_cols=146 Identities=15% Similarity=0.196 Sum_probs=117.1
Q ss_pred hhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhc-hhhhHHHHHHhHHHHHHHHHHH---HhhhhHHHHHHHHHHHhh
Q 016428 78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASIS---ATTRNLIGMLLGRFVVGT 153 (390)
Q Consensus 78 ~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d-~~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~ 153 (390)
-+-||++..+. ..++.....|..++-...|++.. |.++|+.-..++....++..+. +...+.+.+..+-++.|+
T Consensus 236 g~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~ 313 (403)
T PF03209_consen 236 GEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL 313 (403)
T ss_pred hHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 45578988888 78899999999999999999877 6788888778877777665554 445678889999999999
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC---------chhHHHHHHHHHHHHHHHHH
Q 016428 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA---------GWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~---------g~wr~~f~~~~~~~~~~~~~ 224 (390)
+.|.......+..-|...+++.|..+|.+.....++..++..+++.+.|.. ..|..+|.+.++..++.+++
T Consensus 314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888765421 11666777766665555544
Q ss_pred h
Q 016428 225 M 225 (390)
Q Consensus 225 ~ 225 (390)
.
T Consensus 394 l 394 (403)
T PF03209_consen 394 L 394 (403)
T ss_pred H
Confidence 4
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00016 Score=66.82 Aligned_cols=286 Identities=9% Similarity=0.054 Sum_probs=149.7
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHH-HHHHHHHhHHHhhchhhhHHHHHHhHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAFQLCALP 127 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~-~~~i~~~~~g~l~d~~Grr~~l~~~~~~ 127 (390)
-++.++.+.+..|+..++.+..-..-+.+.-+-. +.+.. ..+-....+ ...+...+..+++++++|.+++-+....
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~-gae~I--~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~ 98 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ-GAEVI--PFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP 98 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC-ChhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444556666666666666544333322221111 22222 455443333 4456678899999999999998877776
Q ss_pred HHHHHHHHHhh--h-------h----------------------HHHHHHHHHHHhhhccchhh-hHHHHHhhcCCCccc
Q 016428 128 MIIGASISATT--R-------N----------------------LIGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPFVR 175 (390)
Q Consensus 128 ~~i~~~~~~~~--~-------~----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r 175 (390)
+.....+.++. | + .|...+..+..-+-.....+ ....+..|.++.++-
T Consensus 99 F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eA 178 (491)
T PF03219_consen 99 FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEA 178 (491)
T ss_pred HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 66665555542 1 1 12222222232222233333 457888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccc--------cCchhHHHHHH-HHHHHHHHHH---HhhcccCChhhHHhcCCHHH
Q 016428 176 GTYGAFIQIATCLGLMGSLLIGIPVKE--------IAGWWRICFWV-SIVPAAILCL---AMVFCAESPHWLYKKGRTAE 243 (390)
Q Consensus 176 ~~~~~~~~~~~~~G~~~~~~~~~~l~~--------~~g~wr~~f~~-~~~~~~~~~~---~~~~~~e~p~~~~~~~~~~~ 243 (390)
.|..++++.+.++|.+++..+...+.+ ..+.|...+.. .++..+...+ ...++.+.. ..+++..+
T Consensus 179 KRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~~~~~~ 255 (491)
T PF03219_consen 179 KRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNV---LTDPRFYP 255 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccccch
Confidence 999999999999999988887777766 11126544332 2222222111 112221100 00000000
Q ss_pred HHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCC-
Q 016428 244 AEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS- 322 (390)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 322 (390)
....+++++.+..-..+.+.++++|....+.+....+...........-....+.+.....-
T Consensus 256 -----------------~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ys 318 (491)
T PF03219_consen 256 -----------------SAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYS 318 (491)
T ss_pred -----------------hhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 00001111222233455667778887777666665555543332222222222222111100
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q 016428 323 --SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS 357 (390)
Q Consensus 323 --~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 357 (390)
.|......++..++..++++.+.+|+|-+....+.
T Consensus 319 afmG~~~~~tGivtii~~~l~~~iir~~GW~~~Alit 355 (491)
T PF03219_consen 319 AFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT 355 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 12245556777777778889999999977665553
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.5e-05 Score=67.34 Aligned_cols=300 Identities=17% Similarity=0.063 Sum_probs=152.1
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHh----HHHHHHHHHhHHHhhchhhhHHHHHHhHHHHH
Q 016428 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC----LGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~----~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~ 129 (390)
..+....++...+.-+.....+-+..+... +.. +..++| .+...+.++..|.+.||..|.++.-.+++..-
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p--~sL---l~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn 79 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFP--GSL---LPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQN 79 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCc---HHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHH
Confidence 355666777777776667777777766642 222 334444 34456778888999999999998777766544
Q ss_pred HHHHHHHh------h--h----hHHHH---HHHHHHHhhhccchhhhHHHH--HhhcC------CCccchhHHHHHHHHH
Q 016428 130 IGASISAT------T--R----NLIGM---LLGRFVVGTGMGLGPTVAALY--VTEVS------PPFVRGTYGAFIQIAT 186 (390)
Q Consensus 130 i~~~~~~~------~--~----~~~~l---~~~r~l~G~~~g~~~~~~~~~--i~~~~------~~~~r~~~~~~~~~~~ 186 (390)
++..+.+. . + +-+.. ++.-.+.|.-.-. ....... =-||. +++.+.+.++...-.=
T Consensus 80 ~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L-as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRID 158 (432)
T PF06963_consen 80 LSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL-ASIANTIAVERDWVVVIAGGDPGALARMNATMRRID 158 (432)
T ss_pred HHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH-HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHH
Confidence 43332221 1 1 11111 1111222211111 1111111 12443 2344556666666666
Q ss_pred HHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhc-c----cCChhhHHhcCCHHHHHHHHHHHhCCCCchhHH
Q 016428 187 CLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF-C----AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261 (390)
Q Consensus 187 ~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~-~----~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (390)
-+..+++|++.|.+.+..+ .+....+.+...++..+.=++ + ...|+ +..+++.++.....+.. .........
T Consensus 159 L~ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~ 235 (432)
T PF06963_consen 159 LFCKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDP 235 (432)
T ss_pred HHHHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc-ccccccchh
Confidence 6678999999999988777 576666666665555433221 1 22222 11111111100000000 000000000
Q ss_pred HHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Q 016428 262 AELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVA 341 (390)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (390)
...+...+.-++....|+..++.+.+...+...++++. ..+.......|+... +.++...|..-....+.++.|+++.
T Consensus 236 ~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~ 313 (432)
T PF06963_consen 236 SILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVY 313 (432)
T ss_pred hHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000111123456667776666655555544443 334344444444432 4444444556677778889999999
Q ss_pred HHHHhhhCChHHHHHHHHHHHHH
Q 016428 342 MVLMDKLGRKALLQWSFFSMAVS 364 (390)
Q Consensus 342 g~l~d~~g~~~~~~~~~~~~~~~ 364 (390)
.++.+|+|..+.-..+.....++
T Consensus 314 p~l~~riGlvr~G~~~l~~q~~~ 336 (432)
T PF06963_consen 314 PWLMKRIGLVRAGLWSLWWQWVC 336 (432)
T ss_pred HHHHHHhcchhhHHHHHHHHHHH
Confidence 99999999877766665544433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.7e-06 Score=66.68 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=75.1
Q ss_pred ccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 016428 67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL 146 (390)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~ 146 (390)
....+|.+-.+.+.++....++ |.+.-..+-...+...+.|-+.|+-|||+.-+.-++-..++ .++-.+++|-.+++
T Consensus 53 DWLQgPYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs-CiTKhSpqYkVLmV 129 (454)
T KOG4332|consen 53 DWLQGPYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS-CITKHSPQYKVLMV 129 (454)
T ss_pred hhhcCceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH-HHhhcCCceEEEee
Confidence 3344677777788888888877 66666666667788889999999999999655444433332 23456789999999
Q ss_pred HHHHHhhhccchhhhHHHH-HhhcC
Q 016428 147 GRFVVGTGMGLGPTVAALY-VTEVS 170 (390)
Q Consensus 147 ~r~l~G~~~g~~~~~~~~~-i~~~~ 170 (390)
+|.+-|+..+..+...-++ ++|.-
T Consensus 130 GR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 130 GRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999888887665 55654
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-05 Score=70.94 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=108.6
Q ss_pred HHHHHhHHHHHHHHHhHHHhhchhh-hHHHHHHhHHHHHHHHHHHHhhhh---------------------HHHHHHHHH
Q 016428 92 LVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISATTRN---------------------LIGMLLGRF 149 (390)
Q Consensus 92 ~~~s~~~~~~~i~~~~~g~l~d~~G-rr~~l~~~~~~~~i~~~~~~~~~~---------------------~~~l~~~r~ 149 (390)
|....+.+...+.+++..++.+++| ||++..++.++.+++.....+.++ -+..++.-.
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 4444555555677888899999999 578889998888888887775543 266777889
Q ss_pred HHhhhccchhhhHHHHHhhcCCC--ccchhHHHHHHHHHHHHHHHHHHhcccccccCc-hhHHHHHHHHHHHHHHHHHhh
Q 016428 150 VVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLAMV 226 (390)
Q Consensus 150 l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g-~wr~~f~~~~~~~~~~~~~~~ 226 (390)
+.|+..+......++++++..++ ++.|..+|+++.+..+..++..+..+.+.+..| .-.+.+.+.++..++..+..+
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~ 468 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL 468 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985 455999999999999999988877776544433 235677788888877766654
Q ss_pred -cccCCh
Q 016428 227 -FCAESP 232 (390)
Q Consensus 227 -~~~e~p 232 (390)
.+|+++
T Consensus 469 ~~~~~~~ 475 (477)
T TIGR01301 469 ILLPRPR 475 (477)
T ss_pred HhCCCCC
Confidence 466653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.5e-06 Score=70.58 Aligned_cols=287 Identities=12% Similarity=0.057 Sum_probs=163.5
Q ss_pred hhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 016428 74 LESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152 (390)
Q Consensus 74 ~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 152 (390)
.|++. .+.|++.++.. .-+.-+..-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+-+.-++.|
T Consensus 28 tpyl~gp~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG 106 (433)
T KOG3810|consen 28 TPYLLGPDKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYG 106 (433)
T ss_pred chhccCCCCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcC
Confidence 34443 34566555432 12222333455666677777899999999999888888888888889999999999999999
Q ss_pred hhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch-hHHHHHHHHHHHHHHHHHhhcccCC
Q 016428 153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLAMVFCAES 231 (390)
Q Consensus 153 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~-wr~~f~~~~~~~~~~~~~~~~~~e~ 231 (390)
...+. ..+-++++-+..+++++.++.+...+..-.|...|..++..+.+.... +...=.+......+..+..+++|..
T Consensus 107 ~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v 185 (433)
T KOG3810|consen 107 PATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRV 185 (433)
T ss_pred hHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCC
Confidence 87665 456778888888999999999999999999999998888888765430 2333334333344445556777777
Q ss_pred hhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHh
Q 016428 232 PHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF 311 (390)
Q Consensus 232 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
+|....+.+.++.. .......+. +.+..+. .+.....-..++.+..+||......+ ++....+++.....|
T Consensus 186 ~rSl~f~~~~~~~~--v~~~e~~~~-~~~~~~~--l~~~~~~l~~~l~~~y~np~ll~WSl----WwAl~scg~~QV~nY 256 (433)
T KOG3810|consen 186 KRSLYFHRLEDKIS--VGDLEEMNP-QASYMSY--LRGAFVLLWRDLQECYSNPRLLKWSL----WWALASCGYYQVTNY 256 (433)
T ss_pred chhhhhhcccccce--eccchhcCc-cchhhHH--HHHHHHHHHHHHHHHhcCchhhhhHH----HHHHhhchhHHHHHH
Confidence 65443333222110 000000000 0000000 00000000112334445555443322 222233335556666
Q ss_pred HHHHHhhcC-CC----chHHHHHHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHHHHHHHHHh
Q 016428 312 SSSVFKSAG-LS----SGLANVFVGIANLLGSVVAMVLMDKLGRK--ALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 312 ~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~ 371 (390)
.+...+... .. .|..-....+.++++.+..|.+--++.|. .++.++.+..+...+.+...
T Consensus 257 ~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t 323 (433)
T KOG3810|consen 257 TQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT 323 (433)
T ss_pred HHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc
Confidence 666665542 22 23355566677778888888886665554 23334444444444444333
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-06 Score=56.96 Aligned_cols=70 Identities=24% Similarity=0.354 Sum_probs=59.0
Q ss_pred HHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
-..+++.....+...|.+|...++.|++..+. |.+.++..+...++++++|.++||+|+++..+....++
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34456666677778889999999999988887 99999999999999999999999999988877765543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0014 Score=59.18 Aligned_cols=285 Identities=11% Similarity=0.070 Sum_probs=155.8
Q ss_pred hhhHHHHHHHHHHHhhhhcccccccchhhhhhccccC---CcchhhHHHHHHhHH-HHHHHHHhHHHhhchhhhHHHHHH
Q 016428 48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN---GNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAFQL 123 (390)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~s~~~~-~~~i~~~~~g~l~d~~Grr~~l~~ 123 (390)
.-+..++.+.+..++..++.+.+ -.+.+.+.++ ++.. +++-+...+ +..+..++.+++.+++.|.+++-.
T Consensus 24 ~E~~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~~~gae~I--~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~ 97 (509)
T COG3202 24 YELKKFLPLALLFFCILFNYNLL----RSLKDSLVVTRQGAESI--SFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI 97 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhhhheEeecCcchhh--HHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 34455555555555555555443 3344444443 2223 677777777 678889999999999999999988
Q ss_pred hHHHHHHHHHHHHhh---------hh-----------------------HHHHHHHHHHHhhhccchhh-hHHHHHhhcC
Q 016428 124 CALPMIIGASISATT---------RN-----------------------LIGMLLGRFVVGTGMGLGPT-VAALYVTEVS 170 (390)
Q Consensus 124 ~~~~~~i~~~~~~~~---------~~-----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~ 170 (390)
.+..+....+++++. ++ .|...+...+.=+=.....+ .......|.+
T Consensus 98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit 177 (509)
T COG3202 98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT 177 (509)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888777777777753 11 02222222222222222222 3456678999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHhcccccccCch---------hHHHHHHHHHHHHHHHHHhhc----ccCChhhHHh
Q 016428 171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---------WRICFWVSIVPAAILCLAMVF----CAESPHWLYK 237 (390)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~---------wr~~f~~~~~~~~~~~~~~~~----~~e~p~~~~~ 237 (390)
..++-.|..++++.+.+++..++..+..++.++... -+..+.+.+..+++++....+ .+++|+...+
T Consensus 178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~ 257 (509)
T COG3202 178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLR 257 (509)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHH
Confidence 989999999999999999999888888887764321 122233333333333333222 2333332211
Q ss_pred cCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHh
Q 016428 238 KGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK 317 (390)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (390)
+.+++ +.++.+-.-..+.+.+.++|..+...+...++..+...... .+-..+..
T Consensus 258 ~~~kk-----------------------~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~---~wKs~ik~ 311 (509)
T COG3202 258 AKKKK-----------------------KKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEG---VWKSGIKE 311 (509)
T ss_pred Hhccc-----------------------ccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHhHHH
Confidence 10000 00111122234566677777777666655555544322222 12222222
Q ss_pred hcCCC------chHHHHHHHHH-HHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q 016428 318 SAGLS------SGLANVFVGIA-NLLGSVVAMVLMDKLGRKALLQWSFFSMAVS 364 (390)
Q Consensus 318 ~~~~~------~~~~~~~~~~~-~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 364 (390)
..+.. .+......++. .++...+++.+.+|.|-....++.-+.+.++
T Consensus 312 ~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit 365 (509)
T COG3202 312 LYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT 365 (509)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11111 12244555555 5566677888999988766655554444444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.3e-05 Score=70.85 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=89.3
Q ss_pred cchhhhh-hccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHH-----hhhhHHHHH
Q 016428 72 EPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-----TTRNLIGML 145 (390)
Q Consensus 72 ~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~-----~~~~~~~l~ 145 (390)
...|.+. +.+|.+..+. ++.......+..+++.+.+++.++.++++.+.....+..++.++.. ..+++...+
T Consensus 239 ~~~P~~l~~~~g~s~~~~--gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~ 316 (413)
T PRK15403 239 AVSPVILIDAGGMTTSQF--AWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSV 316 (413)
T ss_pred HhChHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHH
Confidence 3446554 4457776666 7887777888888888888876544443333222222222222222 123444456
Q ss_pred HHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHH
Q 016428 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (390)
Q Consensus 146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~ 220 (390)
++.++.|+|.+...+...... ..-.+..+|++.++.+.....+..+++..++++.++.. ++.|...++...+
T Consensus 317 ~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~ 388 (413)
T PRK15403 317 LGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGG--RLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHH
Confidence 788888998888877776432 22223357999999988888888888888888776643 5555554444333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-05 Score=74.83 Aligned_cols=145 Identities=16% Similarity=0.085 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhhhhcccccccchhhhhh-ccccCCcc-hhhHHHHHHhHHHHHHHHHhHHHhhchhhh-HHHHHHhHHHH
Q 016428 52 HVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNT-LAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPM 128 (390)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~~~s~~~~~~~i~~~~~g~l~d~~Gr-r~~l~~~~~~~ 128 (390)
.+.+..+..++.++.........|.... -++-+... ...++....+.++..+++.+.|.+..+++| |+.++++..++
T Consensus 311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ 390 (599)
T PF06609_consen 311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM 390 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 3444445555555555544555565543 23333221 122788888889999999999999988876 55556777666
Q ss_pred HHHHHHHHh--hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHh
Q 016428 129 IIGASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI 196 (390)
Q Consensus 129 ~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 196 (390)
.++..+++. .+|....+..-++.|++.|...........-..|++.-+.+.++..+.-.+|..+|..+
T Consensus 391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 655444433 34666667778899999999888877777778889999999998887777776666544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.1e-05 Score=73.08 Aligned_cols=172 Identities=13% Similarity=-0.011 Sum_probs=118.4
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhcc-ccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhH--------H-HHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR--------R-AFQ 122 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr--------~-~l~ 122 (390)
++++++.+++..-....+..-+.+|.+.+ |.+.++.....+.+++.++..+|-+..|.++...-+| + .+.
T Consensus 355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~ 434 (591)
T PTZ00207 355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF 434 (591)
T ss_pred HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence 55666666665555555555567788888 6533331102378888999999999999888222121 2 233
Q ss_pred HhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHH-HHhccccc
Q 016428 123 LCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS-LLIGIPVK 201 (390)
Q Consensus 123 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~-~~~~~~l~ 201 (390)
+..+ +.++.++.++.-.-..+++.-++.|++.|..+++....++|.|. |+-|+-..+......+|+.+- ..+.|.+.
T Consensus 435 ~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Y 512 (591)
T PTZ00207 435 IPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWY 512 (591)
T ss_pred HHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444 66666666666444789999999999999999999999999998 888998888888888887654 45555554
Q ss_pred ccC----ch--------hHHHHHHHHHHHHHHHHHhh
Q 016428 202 EIA----GW--------WRICFWVSIVPAAILCLAMV 226 (390)
Q Consensus 202 ~~~----g~--------wr~~f~~~~~~~~~~~~~~~ 226 (390)
+.. +. .|..|++.+..++...+...
T Consensus 513 d~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~ 549 (591)
T PTZ00207 513 TQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST 549 (591)
T ss_pred HHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence 321 11 67888887777777665543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-05 Score=70.98 Aligned_cols=158 Identities=16% Similarity=0.084 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch----hhhHHHHHHhHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQLCALP 127 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~----~Grr~~l~~~~~~ 127 (390)
+...++..+......+.+...+|.+.++ .|.+..+. +.+.+.+.++.+++.++.|+++|| ..+|......+.+
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a--~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA--NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh--ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4566666777777777777888888888 44655555 788999999999999999999999 7777777777666
Q ss_pred HHHHH-HHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCcc-chhHHHHHHHHHHHH-HHHHHHhcccccccC
Q 016428 128 MIIGA-SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV-RGTYGAFIQIATCLG-LMGSLLIGIPVKEIA 204 (390)
Q Consensus 128 ~~i~~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G-~~~~~~~~~~l~~~~ 204 (390)
..+.. ......++......+-+....+.+...+.......+...++. |-...+....+.+.+ .+.++..-+......
T Consensus 353 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y 432 (495)
T KOG2533|consen 353 YAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRY 432 (495)
T ss_pred HHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcch
Confidence 65554 444444434444444444444455556666677777665443 334444444444444 444445555555555
Q ss_pred chhHHHHHH
Q 016428 205 GWWRICFWV 213 (390)
Q Consensus 205 g~wr~~f~~ 213 (390)
+ |.+.|..
T Consensus 433 ~-~~~~f~~ 440 (495)
T KOG2533|consen 433 G-WGAVFYM 440 (495)
T ss_pred h-hhhHHHH
Confidence 5 7888844
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00065 Score=59.14 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=97.0
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhc-----hhhhHHHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAF 121 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d-----~~Grr~~l 121 (390)
+.....+..+.+.+.+.+.-.+... .+|.+.+.-|.|.++. +. .+....-+ .--++|.++.| |+||||..
T Consensus 27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~-fS~ay~P~-sLKllWaPiVDs~y~k~~GrrksW 101 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AI-FSFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSW 101 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hh-hhhhhhHH-HHHHHHHhhhHHHHHHhhccccce
Confidence 4445556677777888888888877 8899988777776654 33 22222222 34678999999 99999876
Q ss_pred HH-hHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHH
Q 016428 122 QL-CALPMIIGASISAT-----------TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG 189 (390)
Q Consensus 122 ~~-~~~~~~i~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 189 (390)
++ +..+.+......+. .++...+...-++.-+..+.--.+.-.+.-.+..+++-|-+......+...|
T Consensus 102 vvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~G 181 (510)
T KOG3574|consen 102 VVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAG 181 (510)
T ss_pred eeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhh
Confidence 55 44444444444433 2344444444455555555555555566666777888888888877788888
Q ss_pred HHHHHHhcccccc
Q 016428 190 LMGSLLIGIPVKE 202 (390)
Q Consensus 190 ~~~~~~~~~~l~~ 202 (390)
.+++..+--.+.+
T Consensus 182 yfL~~~ifLaL~s 194 (510)
T KOG3574|consen 182 YFLGNVVFLALES 194 (510)
T ss_pred HHhhcceeeEecC
Confidence 7777666544443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=66.40 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=106.6
Q ss_pred hhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHH-HhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 016428 74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSG-WIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152 (390)
Q Consensus 74 ~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g-~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 152 (390)
.-+....++++.++. +...+.......+++.+.. .+...+|-|+++..|++.-.+.....+++++.|+++....+.+
T Consensus 265 ~~yl~~~f~w~~~~~--s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~ 342 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEF--SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVA 342 (463)
T ss_pred EEEEeeecCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Confidence 344667788887777 8788888888888888877 7788899999999999999999999999999999999998888
Q ss_pred hhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc
Q 016428 153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (390)
Q Consensus 153 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 201 (390)
+. +...|...+.++.+.+++++|++.++.+....+..+++|.+-+.+.
T Consensus 343 ~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 343 LA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred hh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 74 4456788899999999999999999999999999888888766553
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.1e-05 Score=65.02 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=107.0
Q ss_pred hhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhh--hHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhc
Q 016428 78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGM 155 (390)
Q Consensus 78 ~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 155 (390)
.+.+|.++.+. |-+.+...+...+.+....+..||.. -|-.+..++.++.=..++.+.++....+..+-.+-.+..
T Consensus 289 ~~rfg~ss~~~--G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~ 366 (451)
T KOG2615|consen 289 HGRFGYSSMQQ--GKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFST 366 (451)
T ss_pred cCccCCChhhh--eeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence 36778777665 77777777777888888888889888 788888888887777788888888888999999999888
Q ss_pred cchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC
Q 016428 156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204 (390)
Q Consensus 156 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~ 204 (390)
+...+....++....|+++||..+|+..+...++-.+||+++|....+.
T Consensus 367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 8888888899999999999999999999999999999999998877643
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00029 Score=65.33 Aligned_cols=110 Identities=19% Similarity=0.161 Sum_probs=84.4
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhh--H----HH-HHHhHHHHHHHHHHHHhh---------hhHHHHHHHHHHHhhh
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGR--R----RA-FQLCALPMIIGASISATT---------RNLIGMLLGRFVVGTG 154 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Gr--r----~~-l~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~~ 154 (390)
+|..++..+...+.+|+.+++=.|.+| | +. +.+|+++.+++.+...++ .+.+++++..+++++|
T Consensus 311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g 390 (493)
T PRK15462 311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA 390 (493)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 588888888888888887777555532 1 11 566777777776655432 2667888999999999
Q ss_pred ccchhhhHHHHHhhcCCCccchhHHHHHHHH-HHHHHHHHHHhcccc
Q 016428 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIA-TCLGLMGSLLIGIPV 200 (390)
Q Consensus 155 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~l 200 (390)
+=...|...+++++..|++.|++.+|.+... ..+|..++..++...
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999774 467777776665544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00022 Score=63.60 Aligned_cols=133 Identities=15% Similarity=0.095 Sum_probs=92.7
Q ss_pred HHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCC
Q 016428 92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171 (390)
Q Consensus 92 ~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 171 (390)
.+.-+-.+-..+..+.+.++.+|+..+.=...+.++.+++.++.++++|.+.-+++-++.+++.|........+. ..++
T Consensus 63 ~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~ 141 (402)
T PF02487_consen 63 AVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYG 141 (402)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcC
Confidence 344444556667778888899988755445666667888899999999999999999999999999988887764 4565
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhcccccccCc-hhHHHHHHHHHHHHHHHHHhhc-ccC
Q 016428 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAILCLAMVF-CAE 230 (390)
Q Consensus 172 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g-~wr~~f~~~~~~~~~~~~~~~~-~~e 230 (390)
+ ...+-++++.+.+.++|+..-..+.+ .+ .-|..+.+...+.++..+..++ +|+
T Consensus 142 ~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 142 K----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred c----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3 35677777888778888776555554 33 1366666655555544444443 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=64.61 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=78.2
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH--H---HHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHH
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM--I---IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~--~---i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 165 (390)
-+....|.+|-.++.--...+ |+ |+..+.+.+-. . +.....-+.++.+..++.-+..|+..|..+.-....
T Consensus 284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 284 RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 677777877766654332221 33 33333333222 2 222233456889999999999999999999999999
Q ss_pred HhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc
Q 016428 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (390)
Q Consensus 166 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 201 (390)
+.|-.|+++|..+++..+.+-++|..++.+++-.+.
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00029 Score=63.69 Aligned_cols=108 Identities=11% Similarity=0.155 Sum_probs=86.7
Q ss_pred HHHHHhHHHHHHHHHHHHhh---hh------HHHHHHHHHHHhhhccchhhhHHHHHhhcCCCc---cchhHHHHHHHHH
Q 016428 119 RAFQLCALPMIIGASISATT---RN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF---VRGTYGAFIQIAT 186 (390)
Q Consensus 119 ~~l~~~~~~~~i~~~~~~~~---~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 186 (390)
++++++.++..+|.++..++ +. ...++++-++.++|.|+.=|....+.+|-++++ +|.+...+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888885443 22 267888999999999999999999999999765 4667788899999
Q ss_pred HHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhc
Q 016428 187 CLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227 (390)
Q Consensus 187 ~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~ 227 (390)
++|..++..+.+++.++.+ |.+.|.+.++..++.++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999988 999999987777666555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0019 Score=61.16 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=117.5
Q ss_pred cccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-hhHHHHHHhHHHHHHHHHHHHhhhh------
Q 016428 68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRN------ 140 (390)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~i~~~~~~~~~~------ 140 (390)
......+.++.++++.+...+ .-..+.+.-......+.+++++|-| ||-+++.++.++..++..+..++..
T Consensus 55 g~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p 132 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP 132 (571)
T ss_pred cchhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 345667788888998877554 5667777777788889999999975 9999999999888888655443211
Q ss_pred -------------------HHHHHHHHHHHhhhccchhhhHHHHHhhcCC---Cc-c--chhHHHHHHHHHHHHHHHHHH
Q 016428 141 -------------------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSP---PF-V--RGTYGAFIQIATCLGLMGSLL 195 (390)
Q Consensus 141 -------------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~-~--r~~~~~~~~~~~~~G~~~~~~ 195 (390)
...++.+.-+..+|.|+.-+.....-+|-++ ++ + +...+.++....++|..++..
T Consensus 133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t 212 (571)
T KOG1237|consen 133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT 212 (571)
T ss_pred ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence 2356667788888999999999899898887 22 2 236788889999999999998
Q ss_pred hcccccccCchhHHHHHHHHHHHHHHHHH
Q 016428 196 IGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 196 ~~~~l~~~~g~wr~~f~~~~~~~~~~~~~ 224 (390)
+-.+.-++.+ |.+-|.+.....++.+++
T Consensus 213 ~~vyiq~~~~-w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 213 VLVYIQDNVG-WKLGFGIPTVLNALAILI 240 (571)
T ss_pred HHHhhhhccc-ceeeccHHHHHHHHHHHH
Confidence 8888877887 999998866665555443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00051 Score=45.95 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q 016428 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 360 (390)
..++++........+++.|..+ .+.+..+.|.+.....+..+++.++.|.++||.++++.......+
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3444444444444445555443 344445567788888899999999999999999998876655443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.027 Score=48.32 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=55.6
Q ss_pred HHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCC
Q 016428 98 LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171 (390)
Q Consensus 98 ~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 171 (390)
......++++.+.+..++|-|++++++....... +..=+-+.+..++-+-.+.|++.+..+..--+|+++.-.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 3455567777779999999999999888776542 233344678899999999999999988877777766543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.013 Score=55.29 Aligned_cols=128 Identities=14% Similarity=0.019 Sum_probs=75.5
Q ss_pred hhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHH-hHHHHH-HHHHH----HHhhhhH-HHHHHHHHHHhhhccchhh
Q 016428 88 LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMI-IGASI----SATTRNL-IGMLLGRFVVGTGMGLGPT 160 (390)
Q Consensus 88 ~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~-~~~~~~-i~~~~----~~~~~~~-~~l~~~r~l~G~~~g~~~~ 160 (390)
..++.+.++++.|.++|+.+.+++.++--++...+- ++.+.+ ++..+ .++...+ ..++..-++.++..|...|
T Consensus 50 ~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~P 129 (521)
T PRK03612 50 TQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIP 129 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334899999999999999999988754333322211 111111 11111 1111111 1223345667788888888
Q ss_pred hHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc-ccCchhHHHHHHHHH
Q 016428 161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIAGWWRICFWVSIV 216 (390)
Q Consensus 161 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-~~~g~wr~~f~~~~~ 216 (390)
....+..+.. .++-++..|-.+....+|+++|.++.+++. ...|..+..+.+..+
T Consensus 130 l~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l 185 (521)
T PRK03612 130 LLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL 185 (521)
T ss_pred HHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 7766665433 223466778888889999999998877655 355645555544433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.021 Score=52.08 Aligned_cols=133 Identities=15% Similarity=0.017 Sum_probs=96.6
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhH-------HHHHHhHHHHHHHHHHHHhh----------hhHHHHHHHHHHHhh
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRR-------RAFQLCALPMIIGASISATT----------RNLIGMLLGRFVVGT 153 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr-------~~l~~~~~~~~i~~~~~~~~----------~~~~~l~~~r~l~G~ 153 (390)
+|..+...+...+.+++..++-.+.++| .=+-+++.+.+.+.++.... .+.++++...+++++
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~ 406 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF 406 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 5888888888888888888887775554 22344555555555544433 357889999999999
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc------ccCchhHHHHHHHHHHHHHHHHH
Q 016428 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK------EIAGWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~------~~~g~wr~~f~~~~~~~~~~~~~ 224 (390)
|+=+..|...++++...|++-.+..++.+......|..++..+++.-. +... -...|+..+...++..+.
T Consensus 407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~-~~~~F~~~g~v~i~~~~~ 482 (498)
T COG3104 407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFI-EGRVFGTIGVVAIVIGIL 482 (498)
T ss_pred HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhh-hhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888888777766321 1222 355666655555554443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.047 Score=48.78 Aligned_cols=173 Identities=12% Similarity=-0.044 Sum_probs=79.9
Q ss_pred HHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHh----HHHhhchhhhHHHHHHhHHHHHHH
Q 016428 56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTL----SGWIADGVGRRRAFQLCALPMIIG 131 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~----~g~l~d~~Grr~~l~~~~~~~~i~ 131 (390)
.++..+-.-..++.+....+++.+++--+..+ --....+.+...+..++ -.++.-|.-+|-.... .+...+.
T Consensus 23 ~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l-~~~~il~ 98 (406)
T KOG1479|consen 23 FLLLGIGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLL-SLIAILF 98 (406)
T ss_pred HHHHhcccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33333334445566666777777776543332 23444444444444444 4444445222211111 1111111
Q ss_pred HHHHHhh---------hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 016428 132 ASISATT---------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 132 ~~~~~~~---------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 202 (390)
.+.+.++ ..+...++.-.+.+++.|..........++ +|+|.-+-.++=.+.+..+-+.+--+......+
T Consensus 99 i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~ 177 (406)
T KOG1479|consen 99 IVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSD 177 (406)
T ss_pred HHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCC
Confidence 2222222 245666677788888888777666665555 555543322222222222222222122222222
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhcccCChh
Q 016428 203 IAGWWRICFWVSIVPAAILCLAMVFCAESPH 233 (390)
Q Consensus 203 ~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 233 (390)
....=...|.+..+..+++++....+|+.|-
T Consensus 178 ~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 178 SRTSALIYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred CCceeehhHHHHHHHHHHHHHHHHHhhcchH
Confidence 2221233455566666677776666777664
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0048 Score=56.90 Aligned_cols=145 Identities=13% Similarity=0.042 Sum_probs=99.9
Q ss_pred chhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHh----------hhhHHHHHHHHHHHhhhcc
Q 016428 87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT----------TRNLIGMLLGRFVVGTGMG 156 (390)
Q Consensus 87 ~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~----------~~~~~~l~~~r~l~G~~~g 156 (390)
+...|.+..+..++..++..+..+..-+..-|+++..+.++.++..+.-.. .++.+..+.--++..+..+
T Consensus 254 ~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~ 333 (433)
T PF03092_consen 254 PSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGM 333 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHH
Confidence 333377777778888888888888877888899888888777666554221 1222333334566666666
Q ss_pred chhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCch-------hHHHHHHHHHHHHHHHHHhhccc
Q 016428 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRICFWVSIVPAAILCLAMVFCA 229 (390)
Q Consensus 157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~-------wr~~f~~~~~~~~~~~~~~~~~~ 229 (390)
..+-....+++|..|+..-|...++..+..++|..++..++..+.+..+. -.+..++..+..++.+.+..++|
T Consensus 334 i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp 413 (433)
T PF03092_consen 334 IAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLP 413 (433)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcC
Confidence 67777778899999999999999999999999988888888776654331 12233344455555555555677
Q ss_pred CC
Q 016428 230 ES 231 (390)
Q Consensus 230 e~ 231 (390)
++
T Consensus 414 ~~ 415 (433)
T PF03092_consen 414 PQ 415 (433)
T ss_pred CC
Confidence 65
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0084 Score=54.63 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=100.0
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~ 132 (390)
.+...++..+-++..-.+......+...-|+++... |..-+.-.+....+.+...++.+|+|..+.=+.++..-.++.
T Consensus 260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L 337 (432)
T PF06963_consen 260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL 337 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 444444444444444444555566666668887766 888888888899999999999999998888777766544443
Q ss_pred HHHHh------hh----hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc
Q 016428 133 SISAT------TR----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (390)
Q Consensus 133 ~~~~~------~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 201 (390)
.++.. ++ +...++.+-++.=+|.=+......-++.|..|+++||...|.-.+..++--++-..++-.+.
T Consensus 338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33322 12 23334434444444434445566678899999999999999999988888777776655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.038 Score=50.61 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=77.8
Q ss_pred HHHHHHHHHhHHHhhc---hhhhHHHHHHhHHHHHHHHHHHHhh------------------hhHHHHHHHHHHHhhhcc
Q 016428 98 LGGAFIGSTLSGWIAD---GVGRRRAFQLCALPMIIGASISATT------------------RNLIGMLLGRFVVGTGMG 156 (390)
Q Consensus 98 ~~~~~i~~~~~g~l~d---~~Grr~~l~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~~g 156 (390)
.+|..++..+.+.+++ ++||++.+.++..+..++.++.-.+ +++...++.-++.|++-+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~ 368 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA 368 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence 3444455555666664 5799999999988888877776542 246677888899999999
Q ss_pred chhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccc
Q 016428 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (390)
Q Consensus 157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 200 (390)
......+.++.+.. +++|..+.++...-..++..++.......
T Consensus 369 ~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 369 CFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999 67789999998888888877766654433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.025 Score=51.60 Aligned_cols=143 Identities=14% Similarity=0.047 Sum_probs=77.4
Q ss_pred HHHHHHHhhhhcccccccchhhhhhc--cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhc-----hhhhHHHHHH-hHH
Q 016428 55 VATLSSFLFGYHLGVVNEPLESISLD--LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAFQL-CAL 126 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d-----~~Grr~~l~~-~~~ 126 (390)
++.+.+++.+.-.+.....+|.+.++ -+.+.++. |. .|....-+. .-++|.++.| |+||||..++ ...
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~-fSla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~ 79 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AI-FSLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQY 79 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHh--ee-eeeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHHH
Confidence 45566778877777665677888877 56666554 32 222222222 2455666665 7999988665 333
Q ss_pred HHHHHHHHHHhhh----------------------hH--HHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHH
Q 016428 127 PMIIGASISATTR----------------------NL--IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI 182 (390)
Q Consensus 127 ~~~i~~~~~~~~~----------------------~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 182 (390)
+.++..+..+..- +. ..+...-++.=+-.+.--.+.-.+.-.+..+++++.+...-
T Consensus 80 l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcq 159 (544)
T PF13000_consen 80 LSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQ 159 (544)
T ss_pred HHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHH
Confidence 3344333333211 01 12222222222222222223333444455678888888888
Q ss_pred HHHHHHHHHHHHHhccccc
Q 016428 183 QIATCLGLMGSLLIGIPVK 201 (390)
Q Consensus 183 ~~~~~~G~~~~~~~~~~l~ 201 (390)
..+.+.|.+++..+--.+.
T Consensus 160 tvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 160 TVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HhHhhhhHHHHHHHHHhhC
Confidence 8888888777766654444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.017 Score=47.99 Aligned_cols=101 Identities=7% Similarity=0.028 Sum_probs=55.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhcccc---cc--cCchhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHH
Q 016428 173 FVRGTYGAFIQIATCLGLMGSLLIGIPV---KE--IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAE 247 (390)
Q Consensus 173 ~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~~--~~g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 247 (390)
|+|+..+.+-..+.++|.++....-... .+ ..+ |++++.+.+++.++-++...++ ++.-....+. +
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~-W~~I~si~~lL~~IpLIly~if-Gk~fd~~~~~--~----- 72 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNN-WQWILSIFILLIFIPLILYIIF-GKNFDIYSPK--E----- 72 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-cccccccCcc--c-----
Confidence 5677777777778888876655442211 11 123 9999888777666655554433 2210000000 0
Q ss_pred HHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHH
Q 016428 248 FEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA 298 (390)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (390)
.+++++.+..++.+..+++|++.-|...+.+....
T Consensus 73 ----------------k~~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL 107 (267)
T PF07672_consen 73 ----------------KQEKENSTLSKKPSYKSILKEKETWKWILIYGIWL 107 (267)
T ss_pred ----------------ccccccccccccchHHHHHccchHHHHHHHHHHHh
Confidence 01112223334577889999999887776655544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0058 Score=54.77 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=77.3
Q ss_pred chhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhh-hHHHHHHhHHHHHHHHHHHHhh----hhHHHHHHH
Q 016428 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISATT----RNLIGMLLG 147 (390)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~G-rr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~ 147 (390)
.+....+.-|.+.... |++.....++..+++...|.+.||.. -|.+.++......++....... .+.+.++..
T Consensus 288 ~l~~~l~~sgY~~~~a--G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t 365 (480)
T KOG2563|consen 288 LLNLALCPSGYEGVFA--GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTT 365 (480)
T ss_pred HhhhccccccCCcccc--chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhh
Confidence 3333344445444333 89999999999999999999999985 4666666666655553222221 234555666
Q ss_pred HHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHH-HHHHHHHHHHHh
Q 016428 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLI 196 (390)
Q Consensus 148 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~~ 196 (390)
-.+.|.+.....|...-+-.|..-|..-+.-.|+.+. +...|..+-...
T Consensus 366 ~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~ 415 (480)
T KOG2563|consen 366 CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIM 415 (480)
T ss_pred HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHH
Confidence 7788888888889988888886644444555555543 333344333333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.061 Score=49.52 Aligned_cols=107 Identities=12% Similarity=0.043 Sum_probs=72.9
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhH--HHHHHh--HHHHHHHHHHHHh---------hhhHHHHHHHHHHHhhhccc
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLC--ALPMIIGASISAT---------TRNLIGMLLGRFVVGTGMGL 157 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr--~~l~~~--~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~g~ 157 (390)
-.....|+++-.+|..+..+.. .-++| .+++.+ =+++.-..++|.. -++-+..++.-++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 3566777777777777554421 11222 333222 2222222334432 24566777789999999999
Q ss_pred hhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcc
Q 016428 158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI 198 (390)
Q Consensus 158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 198 (390)
..+....+..+..++++|..+..+...+..+|..+|..++-
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888887753
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.13 Score=47.49 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHh----cccccccCc-hhH--HHHH
Q 016428 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI----GIPVKEIAG-WWR--ICFW 212 (390)
Q Consensus 140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~----~~~l~~~~g-~wr--~~f~ 212 (390)
.++..++.-++.|++.+........+.+ .+|++. +..+..+.+++.+++.++ .....+..+ .++ ..|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 4667777788899998888877777655 566543 333334444443333322 111112101 022 2333
Q ss_pred HHHHHHHHHHHHhhcccCChh
Q 016428 213 VSIVPAAILCLAMVFCAESPH 233 (390)
Q Consensus 213 ~~~~~~~~~~~~~~~~~e~p~ 233 (390)
+.+++.+++++....+++.|-
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 455555566666666666653
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0038 Score=57.14 Aligned_cols=84 Identities=24% Similarity=0.334 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHH-hHHHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIG 131 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~-~~~~~~i~ 131 (390)
++.+=+.++..+...+.+-|.++.+.+++|+++++. |.+.+.--+..+++.|++|+++|||-+|+.+++ +++.....
T Consensus 13 l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~--Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a 90 (618)
T KOG3762|consen 13 LIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAVV--GTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTA 90 (618)
T ss_pred hheeeeeeeeeeecccccchHHHHHHHHcCCCHHHh--hhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 334445566666777778899999999999999888 999999999999999999999999987655555 55556666
Q ss_pred HHHHHhh
Q 016428 132 ASISATT 138 (390)
Q Consensus 132 ~~~~~~~ 138 (390)
+++..+.
T Consensus 91 ~fll~fv 97 (618)
T KOG3762|consen 91 TFLLVFV 97 (618)
T ss_pred HHheeec
Confidence 6666654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.11 Score=38.98 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q 016428 323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368 (390)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 368 (390)
.+.......++..++..+.+.+.|..+.+....+...+..++.+..
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL 134 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 4456667778888999999999998887776655555444444433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0065 Score=55.65 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=60.7
Q ss_pred HHHHHH-HHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHH
Q 016428 142 IGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (390)
Q Consensus 142 ~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~ 220 (390)
..++++ -++.|.+.-.......++-+|...|++++.+.++++.....+..++|++........| .|+...+.+...++
T Consensus 388 ~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~ 466 (488)
T KOG2325|consen 388 ILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLV 466 (488)
T ss_pred hhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHH
Confidence 344444 4566777777777778888999999999999999999999999999999888888777 57776664444433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.023 Score=52.05 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=51.8
Q ss_pred hHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhcc
Q 016428 311 FSSSVFKSAGLS-SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS 373 (390)
Q Consensus 311 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 373 (390)
++...++.+..+ .+.+......+..+..+.+|+++||+|.|+++.++.+...+..+++.+..+
T Consensus 51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S 114 (511)
T TIGR00806 51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS 114 (511)
T ss_pred HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555 677888899999999999999999999999999999999988888887654
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.004 Score=58.87 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhcccccccchh-hhhhccccCCcchhhHHHHHHhHH-HHHHHHHhHHHhhchhh--hHHHHHHhHHH
Q 016428 52 HVLVATLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVG--RRRAFQLCALP 127 (390)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~-~~~i~~~~~g~l~d~~G--rr~~l~~~~~~ 127 (390)
......++.....+....+....| ++..+|+.+.+++ +++.++..+ +.++|.+++|++..|+. .|..+-.+.+.
T Consensus 306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A--~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~ 383 (539)
T PF03137_consen 306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQA--SLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVV 383 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHH
Confidence 344555555565565555566665 5667899988777 566655544 67899999999999874 45555444444
Q ss_pred HHHHHHHHH---h--h-------------------------------------------------hhHHHHHHHHHHHhh
Q 016428 128 MIIGASISA---T--T-------------------------------------------------RNLIGMLLGRFVVGT 153 (390)
Q Consensus 128 ~~i~~~~~~---~--~-------------------------------------------------~~~~~l~~~r~l~G~ 153 (390)
..++.+... + + +++..+++.-++.-+
T Consensus 384 ~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~ 463 (539)
T PF03137_consen 384 SIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSF 463 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHH
Confidence 333332200 0 0 011233333333334
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHH-HHHHHHHHHHhccccccc
Q 016428 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA-TCLGLMGSLLIGIPVKEI 203 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~~~~~l~~~ 203 (390)
..+.........+-...|+++|+.++|+.... -.+|.+-||++-|.+.+.
T Consensus 464 ~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 464 FTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ---------------------------------------------------
T ss_pred HHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 34444444555566778889999999988654 455778888888877764
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.024 Score=51.19 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHHHHhhchhhHHHhHHHHHh---hcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 016428 286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFK---SAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 362 (390)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 362 (390)
..+......++....+..=-+.++...+++.+ ......|++.....+...+.+++.|++.||++|++++.+|..+..
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWT 109 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHH
Confidence 33444444444554444444455555544444 444557789999999999999999999999999999999999988
Q ss_pred HHHHHHHHhccc
Q 016428 363 VSMAIQVAASSS 374 (390)
Q Consensus 363 ~~~~~~~~~~~~ 374 (390)
++.+.-.+....
T Consensus 110 ~Av~~~~fs~~F 121 (493)
T KOG1330|consen 110 LAVFASGFSNHF 121 (493)
T ss_pred HHHHHHHHHHHH
Confidence 888877766443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.0091 Score=52.38 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=3.7
Q ss_pred HHHHHhHHHHHHHHHhHHHhhch-hhhHHHHHHh--HHHHHHHHHHH----------HhhhhHHHHHHHHHHHhhhccch
Q 016428 92 LVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLC--ALPMIIGASIS----------ATTRNLIGMLLGRFVVGTGMGLG 158 (390)
Q Consensus 92 ~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~--~~~~~i~~~~~----------~~~~~~~~l~~~r~l~G~~~g~~ 158 (390)
.+...|+++-.+|..+.++..-+ -.+|++.+.+ =+++.-..++| .+-+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888888888877764211 1344444332 11222122222 12345567778889999999999
Q ss_pred hhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccc
Q 016428 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199 (390)
Q Consensus 159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 199 (390)
.+....+..+..++++|..+..+......+|..+|..++-.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888776543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.19 Score=44.16 Aligned_cols=47 Identities=15% Similarity=-0.004 Sum_probs=39.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH
Q 016428 321 LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (390)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 367 (390)
.+.+.++......+.+...+.|.+.||+|||+.-+..+++..++++.
T Consensus 69 ~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 69 HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 34566777777788888889999999999999998888888888864
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.04 Score=53.55 Aligned_cols=57 Identities=26% Similarity=0.191 Sum_probs=49.3
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHh
Q 016428 315 VFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
.++.+..+.|.+.....++.+++.++.+++.||.+||+++.++.++++++.++.++.
T Consensus 62 ~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 62 RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 345555667778889999999999999999999999999999999999999887765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.26 Score=33.44 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=47.6
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhccc
Q 016428 317 KSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS 374 (390)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
+.+..+.+.+.....++..+|.+...++.++.++++.+..+.+...+.++.+.+..+.
T Consensus 23 ~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 23 GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3344446778889999999999999999999888888889999999988888876653
|
Note that many members are hypothetical proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.5 Score=39.80 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=55.2
Q ss_pred hhchhhHHHhHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhccc
Q 016428 302 LSGINAIFYFSSSVFKSAGLSSGL---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS 374 (390)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
.+..+.++.|.+++.+..+.+... +.....++..+| +..|.+.|++|++.++.+|.+...++..++......
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~ 89 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG 89 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344667788888888777776554 444456666654 788999999999999999999999999888766544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.46 Score=42.97 Aligned_cols=94 Identities=14% Similarity=0.006 Sum_probs=71.4
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHH--hHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhh
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL--CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~--~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 168 (390)
|.+-++..+..+++.+..|++..++.+-.-+.+ ..++.+...++++.++|.+..+++-++.+.......+.+..-++.
T Consensus 288 G~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~ 367 (412)
T PF01770_consen 288 GAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAK 367 (412)
T ss_pred hHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999877777444433 344455666677889999999999988887777777777777777
Q ss_pred cCCCccchhHHHHHHH
Q 016428 169 VSPPFVRGTYGAFIQI 184 (390)
Q Consensus 169 ~~~~~~r~~~~~~~~~ 184 (390)
....+.-+...|+-..
T Consensus 368 ~l~~e~yaLVFGiNtf 383 (412)
T PF01770_consen 368 NLSEERYALVFGINTF 383 (412)
T ss_pred hccccceeeeeeeHHH
Confidence 7766666766665443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.01 E-value=1.4 Score=39.61 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=73.8
Q ss_pred HHHHHH-hHHHHHHHHHhHHHhhchhhhHHHHHHhH-HHHHHHHHHH-------HhhhhHHHHHHHHHHHhhhccchhhh
Q 016428 91 GLVVSM-CLGGAFIGSTLSGWIADGVGRRRAFQLCA-LPMIIGASIS-------ATTRNLIGMLLGRFVVGTGMGLGPTV 161 (390)
Q Consensus 91 g~~~s~-~~~~~~i~~~~~g~l~d~~Grr~~l~~~~-~~~~i~~~~~-------~~~~~~~~l~~~r~l~G~~~g~~~~~ 161 (390)
-.+..+ |++.-.+|.+.+.++-+.= ||...+... =...+-.+.. ..-++-+++++.-.+.|+..|-....
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl 363 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL 363 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence 345555 7888888877777766653 443333322 2222222221 22356778888999999999999888
Q ss_pred HHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhc
Q 016428 162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG 197 (390)
Q Consensus 162 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 197 (390)
...+..+-.|++++..+..+.......|...|..++
T Consensus 364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 889989999999988888888888888888877764
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.13 Score=46.56 Aligned_cols=128 Identities=16% Similarity=-0.041 Sum_probs=89.6
Q ss_pred HHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCC
Q 016428 92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171 (390)
Q Consensus 92 ~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 171 (390)
|=..++.+...+.+....+++||+|-|+.+..+...+.++..+.+..++.+....-|-..|+-.+....+....++++.-
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~ 415 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI 415 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence 44566667777999999999999998888888888788998899999999999999998887666665555554444321
Q ss_pred C-----------------------ccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHH
Q 016428 172 P-----------------------FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219 (390)
Q Consensus 172 ~-----------------------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~ 219 (390)
. ..+|...|+.+....+..++.....|.+.+..|.=+.+-...+..++
T Consensus 416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~ 486 (498)
T KOG0637|consen 416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVAL 486 (498)
T ss_pred hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHH
Confidence 1 12355566677777777777766667777766543444444433333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.95 E-value=6.6 Score=33.38 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=81.5
Q ss_pred hHHHHHHhHHHHHHHHHhHHHhhchhhhH--HHHHHhHHHHHHHHHHHH----hhh---hHHHHHHHHHHHhhhccchhh
Q 016428 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCALPMIIGASISA----TTR---NLIGMLLGRFVVGTGMGLGPT 160 (390)
Q Consensus 90 ~g~~~s~~~~~~~i~~~~~g~l~d~~Grr--~~l~~~~~~~~i~~~~~~----~~~---~~~~l~~~r~l~G~~~g~~~~ 160 (390)
.|.+.+.++++..+|+-+..++..|-..| ..+.+..+..++...+.. .++ +...-+++-.+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 38999999999999999999988765443 444444333333322221 222 222234455555667788999
Q ss_pred hHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc-cCchhHHHHHHHHHHHHHHHH
Q 016428 161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-IAGWWRICFWVSIVPAAILCL 223 (390)
Q Consensus 161 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~g~wr~~f~~~~~~~~~~~~ 223 (390)
....+-.++.|++.|...+.++..-..+=..++-..- ...+ ..+ -|..|-+......+..+
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynl-h~~~~p~~-tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNL-HVDAFPTT-TRNMFGICSAFLFVASI 425 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheec-ccccCccc-cchhhhhhHHHHHHHHH
Confidence 9999999999999999999887665443333222110 0111 123 47788776666555533
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.39 E-value=1.6 Score=37.73 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhhhcccccccch--hhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch-hhhHHHHHHhHHHHH
Q 016428 53 VLVATLSSFLFGYHLGVVNEPL--ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMI 129 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~ 129 (390)
++-++..++..++.+..+.+.+ |. .+.+..+.+. ++-|....|.+|-.++.--....--+ .---.++-.-..++.
T Consensus 253 MvPL~~VY~~EY~INQGl~ell~F~c-~~g~sls~~s-qYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff 330 (409)
T KOG3880|consen 253 MVPLALVYFAEYFINQGLAELLLFPC-SHGFSLSKDS-QYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFF 330 (409)
T ss_pred HHHHHHHHHHHHHHhhhhHhhEEecc-ccCCccchhh-cchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHH
Confidence 3445555666665554433332 22 4455554433 34688888888744322111111001 001122223344455
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc
Q 016428 130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (390)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 201 (390)
+...+..+.++++..++.-++.|+-.|..++-..--+.+-.++++|-.+++....+-++|..++.+++-.+-
T Consensus 331 ~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 331 LLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 556667788999999999999999999999888877888788899999999999999999998888876554
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.12 Score=45.45 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016428 326 ANVFVGIANLLGSVVAMVL 344 (390)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l 344 (390)
....++++-.+|+.+..+.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~ 205 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWP 205 (309)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhcchhccee
Confidence 5667889999999988874
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=83.46 E-value=2.7 Score=41.11 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=45.6
Q ss_pred hhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHHh
Q 016428 305 INAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAA 371 (390)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
...+..|+...++.....+...........-+..+++|+++|+ +|+++.+.++.++..++..++.+.
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~ 74 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG 74 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555444433333344445555556777789999997 699999999999999998887764
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=82.33 E-value=44 Score=31.38 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=51.5
Q ss_pred HHHHhhhccchhhhHHHHHhhcCC-CccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHH
Q 016428 148 RFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (390)
Q Consensus 148 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~ 220 (390)
-++.|+........--..+.|.+| +++|+..+|-+....++..++..++++.+.+..| |+....+.-+..++
T Consensus 273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~G-w~~~a~i~Pii~li 345 (472)
T TIGR00769 273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYG-WLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Confidence 344566666666666677778776 5678888999888878877777777788888888 88776664444433
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.94 E-value=12 Score=31.72 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=54.6
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhch-hhhHHHHH----HhHHHHHHHHHHHHh-h----hhHHHHHHHHHHHhhhccchhh
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQ----LCALPMIIGASISAT-T----RNLIGMLLGRFVVGTGMGLGPT 160 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~----~~~~~~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~~ 160 (390)
....-.+..|..+|.+..|++... +-||+.+. .+.+++.+..+.... . .++..+++.-++.|++.=+.++
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344566777778888888888774 45555443 233334443333211 1 1366778888888887655555
Q ss_pred hHHHHHhhcCCCccchhHHHHHHHHHHHHH
Q 016428 161 VAALYVTEVSPPFVRGTYGAFIQIATCLGL 190 (390)
Q Consensus 161 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 190 (390)
+...+--| ++..++.+..-.++..+++|-
T Consensus 224 ViL~lPhE-yK~~~pk~ig~~Fg~iWGfGY 252 (267)
T PF07672_consen 224 VILNLPHE-YKGYNPKKIGIQFGLIWGFGY 252 (267)
T ss_pred HHhcChhh-hcCCCcceehhHHHHHHHHHH
Confidence 55433333 333333344444444555553
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=81.93 E-value=27 Score=28.57 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=20.2
Q ss_pred hcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc
Q 016428 168 EVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (390)
Q Consensus 168 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g 205 (390)
|+.-.|++.+.-........++..+|..+++.+.+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~ 190 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLG 190 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333433333444445555566666667666666555
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 390 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-28 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 1e-07
Identities = 51/366 (13%), Positives = 98/366 (26%), Gaps = 20/366 (5%)
Query: 29 TTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL 88
T+ Q+ V+ + + FL+ + + L F
Sbjct: 4 TSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLND-ILLPQ-FQQAFTLTNF 61
Query: 89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGML 145
GL+ S G FI +G + + + +GA++ +A N L
Sbjct: 62 QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121
Query: 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205
+G F++ G+G T A +VT + P Q G + +++ G +
Sbjct: 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181
Query: 206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELS 265
+ + + L S Y L+ + + L
Sbjct: 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM------IIVAIVLLVALLIMLTKFPALQ 235
Query: 266 KLDRGDDGDIVKFEE---LLYGRHFRVVFIGSTLF-ALQQLSGINAIFYFSSSVFKSAGL 321
+ D L RH+R + + Q I Y +
Sbjct: 236 SDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG 295
Query: 322 SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS 381
+ + +G L+ + +L I S++ G
Sbjct: 296 FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI-----SAFAGGHVG 350
Query: 382 LYLSVG 387
L
Sbjct: 351 LIALTL 356
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 37/301 (12%), Positives = 83/301 (27%), Gaps = 33/301 (10%)
Query: 103 IGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG 158
+ G ++D R L A M+ + T ++ M + F+ G G+G
Sbjct: 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136
Query: 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA 218
+ RG + A +G L+ + W ++ A
Sbjct: 137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196
Query: 219 AILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF 278
++ L G E + + + + +
Sbjct: 197 ILVALFAFAMMRDTPQ--SCGLPPIEEYKNDYPDDYNEKAEQELTAKQ---------IFM 245
Query: 279 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS-----VFKSAGLS---SGLANVFV 330
+ +L + + I + + Y + + + S A
Sbjct: 246 QYVLPNKLLWYIAIA--------NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297
Query: 331 GIANLLGSVVAMVLMDKL--GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
A + G+++ + DK+ G + F ++ I + + P + + V G
Sbjct: 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357
Query: 389 L 389
Sbjct: 358 F 358
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 24/169 (14%)
Query: 91 GLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMIIGASI--------SATTRN 140
+ G+ L GW++D V G R A + + ++ A+I + T
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350
Query: 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG--LMGSLLIGI 198
+ +++G + G M +G L+ E++P GT F + LG + S ++G
Sbjct: 351 ICMIVIGFLIYGPVMLIG-----LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405
Query: 199 PVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAE 247
V GW +V LA++ + +K R + E
Sbjct: 406 TVDFF-GW----DGGFMVMIGGSILAVILLI--VVMIGEKRRHEQLLQE 447
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 8e-04
Identities = 42/301 (13%), Positives = 87/301 (28%), Gaps = 47/301 (15%)
Query: 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRR--------AFQLCALPMIIGASISATTRNLI 142
G++ + + + L G ++D +G R+ + A I L+
Sbjct: 46 GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105
Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202
G ++G +G G ++ +VS +G +G+ ++GI
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFE-FGRARMFGCVGWALGASIVGIMFTI 164
Query: 203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA 262
+ FW+ A IL + + F A L
Sbjct: 165 NNQFV---FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL--------- 212
Query: 263 ELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS 322
EL + + + F +S F +
Sbjct: 213 ---------------ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257
Query: 323 SGLANVFVGIANLLGSVVAMVLM-------DKLGRKALLQWSFFSMAVSMAIQVAASSSY 375
+ + G +G ++ +M +++G K L + M+V + A+S+
Sbjct: 258 TRV----FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL 313
Query: 376 I 376
Sbjct: 314 E 314
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.9 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.88 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.61 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.54 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.49 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.46 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.42 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.19 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.0 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=269.09 Aligned_cols=324 Identities=28% Similarity=0.458 Sum_probs=251.3
Q ss_pred CchhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCC------cchhhHHHHHHhHHHHHHHHHhHHHhhchhhhH
Q 016428 45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118 (390)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr 118 (390)
+.++.+...++.+++.++.++|..+++..+|.+.++++.+. ++...|++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34555666667788889999999999999999988875432 223458999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHH
Q 016428 119 RAFQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180 (390)
Q Consensus 119 ~~l~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 180 (390)
++++++.+++.+++++++ +++|++.++++|+++|++.|...+....+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999998 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccC-------chhHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhC
Q 016428 181 FIQIATCLGLMGSLLIGIPVKEIA-------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG 253 (390)
Q Consensus 181 ~~~~~~~~G~~~~~~~~~~l~~~~-------g~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 253 (390)
+.+.+..+|.++++.++..+.... .+||+.+.+..++.++..+..+++||+|+|+..+++.+++.+.+++...
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 999999999999888876554321 2389998888888888888889999999999999999999888877654
Q ss_pred CCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCch---HHHHHH
Q 016428 254 GSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFV 330 (390)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 330 (390)
.+...++..+.++..+.++ +....... ...+..........+.++...+.+..|.+...+..+.+.. ......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (491)
T 4gc0_A 246 NTLATQAVQEIKHSLDHGR-KTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIV 321 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhhh-hhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHH
Confidence 4332222222111111111 11111112 2233344455555566666677778888877776665533 355667
Q ss_pred HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhc
Q 016428 331 GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS 372 (390)
Q Consensus 331 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
++..+++.++++++.||+|||+.+..+...+.++++.+....
T Consensus 322 ~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 322 GVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 888899999999999999999999988888888777665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=263.67 Aligned_cols=293 Identities=13% Similarity=0.116 Sum_probs=241.7
Q ss_pred hhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHH
Q 016428 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (390)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~ 128 (390)
++..+..+++..+..+++....++.+|.+.+++|.+.++. |++.+++.+++.++++++|+++||+|||++++.+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 3555666777778888888889999999999999988877 99999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc-ccC
Q 016428 129 IIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIA 204 (390)
Q Consensus 129 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-~~~ 204 (390)
+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 889999999999999999999999999999999999999999999999999999999999999998 655
Q ss_pred ch------------------------hHHHHHHHHHHHHHHHHHhhc--ccCChhhHHhcCCHHHHHHHHHHHhCCCCch
Q 016428 205 GW------------------------WRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVK 258 (390)
Q Consensus 205 g~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (390)
+. ||+.|++.++..++..+..++ .||+++. .+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~------------------ 239 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NH------------------ 239 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----CC------------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----cc------------------
Confidence 54 899998766666555444433 4554320 00
Q ss_pred hHHHHhhhcccCCCCccchhhhhhcccchhHHHHHHHHHHHHHhhchhhHHHh-HHHHHhhcCCCchHHHHHHHHHHHHH
Q 016428 259 SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF-SSSVFKSAGLSSGLANVFVGIANLLG 337 (390)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (390)
.++++++...++++++++|.++...+..++..........+.+.| .++.++.+..+.+.......++.+++
T Consensus 240 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 311 (438)
T 3o7q_A 240 --------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG 311 (438)
T ss_dssp --------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHH
Confidence 011122233456788899999988888888777777767777777 66655555555677888889999999
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHHhcc
Q 016428 338 SVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS 373 (390)
Q Consensus 338 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 373 (390)
.++.+++.||++||+.+..+.++..++++++.+.++
T Consensus 312 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T 3o7q_A 312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG 347 (438)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999988888888777665544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=262.46 Aligned_cols=309 Identities=12% Similarity=0.049 Sum_probs=236.0
Q ss_pred hhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHH
Q 016428 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (390)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (390)
+.+++.+..++++.+...++.....+.+|.+.+++ .+.++. |++.+++.++..++++++|+++||+|||++++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 44567778888888999999999999999999999 888877 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccc
Q 016428 127 PMIIGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (390)
Q Consensus 127 ~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 202 (390)
+.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cCchhHHHHHHHHHHHHHHHHH-hhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhh
Q 016428 203 IAGWWRICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL 281 (390)
Q Consensus 203 ~~g~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (390)
..+.||+.|++.+++.++..+. .+++||+|+....+++.+... ....+ ..++.+++........+++
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------DYPDD--YNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C---------------CCTHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc----------ccccc--chhhhhcccccccchHHHH
Confidence 5543899999988777665444 466788775322111110000 00000 0000001111112224677
Q ss_pred hcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHHHHHH
Q 016428 282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFF 359 (390)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~ 359 (390)
++++.++...+..++..........+.+.|+.+.++.+..+.+.......++.+++.++.+++.||+ ++|+.+.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 328 (451)
T 1pw4_A 249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 328 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 8888888888777777766666555566555443333333456678888899999999999999999 99988877776
Q ss_pred HHH-HHHHHHHH
Q 016428 360 SMA-VSMAIQVA 370 (390)
Q Consensus 360 ~~~-~~~~~~~~ 370 (390)
+.. ++++++.+
T Consensus 329 ~~~~~~~~~~~~ 340 (451)
T 1pw4_A 329 TLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH
Confidence 666 55544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-30 Score=232.87 Aligned_cols=261 Identities=14% Similarity=0.131 Sum_probs=223.2
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH
Q 016428 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~ 133 (390)
..+++..+...++.....+.+|.+.+++|.+.++. +++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 45566777888888888999999999999988777 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHH
Q 016428 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
+.++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+ ||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877 9999998
Q ss_pred HHHHHHHHHH-HhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHH
Q 016428 214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (390)
Q Consensus 214 ~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (390)
.++..++..+ ..+++||+++.. + ++++...++++++++|.++...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~----~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD----A-----------------------------PRTRLLTSYKTLFGNSGFNCYLL 206 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT----C-----------------------------CCCCTTTCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCC----c-----------------------------ccccHHHHHHHHhcCcchHHHHH
Confidence 8877777665 445577765310 0 00112334567888888888888
Q ss_pred HHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 016428 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR 350 (390)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 350 (390)
..++..........+.+.|..+.++.+..+.+.......++.+++.++.+++.||.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777777778888877777776667788888889999999999999999887
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=219.26 Aligned_cols=288 Identities=15% Similarity=0.129 Sum_probs=196.7
Q ss_pred cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhch-hhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchh
Q 016428 81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159 (390)
Q Consensus 81 ~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 159 (390)
+|.+.++. +++.+.+.++..+++++.|+++|| +|||++++.+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 49 ~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 89887776 999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCCcc--chhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhcc-cCCh----
Q 016428 160 TVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC-AESP---- 232 (390)
Q Consensus 160 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~~-~e~p---- 232 (390)
+...++++|++|+++ |+++.++++.+..+|..++|.+++.+.+..+ ||+.|++.++..++..+..++. ++..
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 999999999999988 7778888999999999999999999998888 9999999776666555444322 2211
Q ss_pred hhHHhcCCHHHHHHHHHH----------------HhCCCCchhHHHHh---------hhcccCCCCccchhhhhhcccch
Q 016428 233 HWLYKKGRTAEAEAEFEK----------------LLGGSHVKSSLAEL---------SKLDRGDDGDIVKFEELLYGRHF 287 (390)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 287 (390)
+....+.+.++.++..+. ..+........... .......+....+..+..+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSY 285 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTH
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 000011122222222222 00111000000000 00000000000001111112223
Q ss_pred hHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-----HHHHHHH
Q 016428 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ-----WSFFSMA 362 (390)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~ 362 (390)
....+...+...........++.|.++..+......+.......++.+++.++.+++.||++||+... .+..+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~ 365 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAG 365 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 44444555555555566667777777766665566788888889999999999999999999886544 6777777
Q ss_pred HHHHHHHHh
Q 016428 363 VSMAIQVAA 371 (390)
Q Consensus 363 ~~~~~~~~~ 371 (390)
++++++...
T Consensus 366 ~~~~~~~~~ 374 (491)
T 4aps_A 366 LSFLLMAIP 374 (491)
T ss_dssp HHHTTTHHH
T ss_pred HHHHHHHHH
Confidence 776655543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-24 Score=196.91 Aligned_cols=281 Identities=15% Similarity=0.083 Sum_probs=178.4
Q ss_pred Hhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH---HHH
Q 016428 61 FLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISA 136 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~---~~~ 136 (390)
+..........+.+|. +.+++|.+..+. |++.+.+.++..++++++|+++||+|||++++.+..+++++.. .++
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~ 94 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445566666 456689988877 9999999999999999999999999999999998887655322 223
Q ss_pred hhhhHH-HHHHHHHHHhhhccchhhhHHHHHhhcCCC--ccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHH
Q 016428 137 TTRNLI-GMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (390)
Q Consensus 137 ~~~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~ 213 (390)
+++... .++..+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+. + ||+.|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~~f~~ 172 (417)
T 2cfq_A 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFVFWL 172 (417)
T ss_dssp HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHHHHH
Confidence 333221 234566777766665555444445555443 4567777777777888999999999888764 4 8999998
Q ss_pred HHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccchhHHHHH
Q 016428 214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG 293 (390)
Q Consensus 214 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (390)
.++..++..+..++.+|+++. +.+.++ ++.++.++....+++++++++.++...+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (417)
T 2cfq_A 173 GSGCALILAVLLFFAKTDAPS---SATVAN---------------------AVGANHSAFSLKLALELFRQPKLWFLSLY 228 (417)
T ss_dssp TTTTTTTHHHHSCSSCCCCSC---SSCSSS---------------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccc---cccccc---------------------ccccccccccHHHHHHHhcCCchhhHHHH
Confidence 776655555555554443310 000000 00000111112345667888887766655
Q ss_pred HHHHHHHHhhchhhHHHhHHHHHhhc---CCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q 016428 294 STLFALQQLSGINAIFYFSSSVFKSA---GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369 (390)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 369 (390)
.+...........+.+.|+++.++.. ....+.......++.+++.++.++++||+|||+.+..+..+.+++.+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 229 VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333345666665443211 11234556666778889999999999999999998888877777655543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=190.97 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=135.0
Q ss_pred hhhhhccc------cCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh-hhHHHHHHhHHHHHHHHHHHHhhh-hHHHHHH
Q 016428 75 ESISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLIGMLL 146 (390)
Q Consensus 75 ~~~~~~~~------~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~ 146 (390)
+.+.+++| .+..+. |++.+++.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYT 114 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44677888 887777 9999999999999999999999999 999999999999999999999999 9999999
Q ss_pred HHHHHhhhccchhhhHHHHHhhcCCCccchhHHHH---HHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHH
Q 016428 147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (390)
Q Consensus 147 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~ 223 (390)
+|+++|++.+...+...+++.|++|+++|+++.+. .+....+|..++|.+++.+.+..+ ||+.|++.++..++..+
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877666 889999999999999999988777 99999988777666555
Q ss_pred Hhhc
Q 016428 224 AMVF 227 (390)
Q Consensus 224 ~~~~ 227 (390)
..++
T Consensus 194 ~~~~ 197 (524)
T 2xut_A 194 FFWL 197 (524)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 4443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-15 Score=135.27 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=140.1
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchh--hhHHHHHHhHHHHH-
Q 016428 54 LVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMI- 129 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~--Grr~~l~~~~~~~~- 129 (390)
....+..++............|.+.++ +|.+..+. +++.+.+.++..++.++.|+++||+ |||+.+..+..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 344444444444444455666766666 78877666 8999999999999999999999999 99999888877766
Q ss_pred HHHHHHHhh--hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHH-HHHHHHHhcccccccCch
Q 016428 130 IGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 130 i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~g~ 206 (390)
++.++..+. .+.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g- 411 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG- 411 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 666666665 37778888889999999988888889999999999999999999999999 99999999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc
Q 016428 207 WRICFWVSIVPAAILCLAMVFC 228 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~~~~~~ 228 (390)
|+..|++.++..++..+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998877777766655443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=133.90 Aligned_cols=167 Identities=19% Similarity=0.105 Sum_probs=115.4
Q ss_pred HhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhh--
Q 016428 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-- 138 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~-- 138 (390)
+........+....+.+.++.+.+.... ........+...++.++.+++.||+|||+.++.+....+++.+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 3333334444455677777777655544 456667778888999999999999999999999988888877765543
Q ss_pred ---hhHHHHHHH-HHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccC------chhH
Q 016428 139 ---RNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------GWWR 208 (390)
Q Consensus 139 ---~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~------g~wr 208 (390)
++...+... -+..+++.+ ..+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+.. + +.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~~ 442 (491)
T 4gc0_A 365 TQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-NG 442 (491)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-TC
T ss_pred cccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hh
Confidence 122222222 222333333 34677789999999999999999999999999888887766554321 2 45
Q ss_pred HHHHHHHHHHHHHHHH-hhcccCC
Q 016428 209 ICFWVSIVPAAILCLA-MVFCAES 231 (390)
Q Consensus 209 ~~f~~~~~~~~~~~~~-~~~~~e~ 231 (390)
+.|++.+.++++..+. .+++||+
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHheecCC
Confidence 5677766666666554 4679999
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-14 Score=127.95 Aligned_cols=141 Identities=13% Similarity=-0.006 Sum_probs=119.0
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcC
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 170 (390)
++..++..++..++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....+++|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 77778888888899999999999999999999999888888888888888888888888888887777777788999999
Q ss_pred CCccchhHHHH-HHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHh-hcccCCh
Q 016428 171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-VFCAESP 232 (390)
Q Consensus 171 ~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~-~~~~e~p 232 (390)
|++.|+++.++ ++....+|..++|.+++.+.+..+ ++..|.+.++..++..+.. .+.||++
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999998 478888999999999999988777 7888888777776665554 4456553
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=126.00 Aligned_cols=152 Identities=14% Similarity=0.026 Sum_probs=121.5
Q ss_pred cccccchhhh-hhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 016428 68 GVVNEPLESI-SLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML 145 (390)
Q Consensus 68 ~~~~~~~~~~-~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~ 145 (390)
.......|.+ .++ +|.+..+. ++..+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI 352 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3334455555 444 48877666 8999999999999999999999999999999999999999999888888876655
Q ss_pred HHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHH
Q 016428 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (390)
Q Consensus 146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~ 224 (390)
.. ++.|++.+...+....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..|.++..|++.++..++..+.
T Consensus 353 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 353 AL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 44 8889999999999999999999866 888888877 5568999999999999887654677777655544444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.7e-13 Score=122.55 Aligned_cols=156 Identities=10% Similarity=0.003 Sum_probs=118.7
Q ss_pred cccccchhhhhh-ccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHH-----HhHHHHHHHHHHHHhhh--
Q 016428 68 GVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-----LCALPMIIGASISATTR-- 139 (390)
Q Consensus 68 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~-----~~~~~~~i~~~~~~~~~-- 139 (390)
......+|.+.+ .++.+..+. ++..+...++..++.++.|++.||+|||+... .+.++.+++.++.++..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGAL 377 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred hhccHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444554444 456554444 77888888899999999999999999986655 67777777766666543
Q ss_pred -------hHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHHHHH
Q 016428 140 -------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (390)
Q Consensus 140 -------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~ 212 (390)
+.+.+++.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.. +.+.|.
T Consensus 378 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~~~~ 455 (491)
T 4aps_A 378 YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVAYFS 455 (491)
T ss_dssp CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHH
Confidence 67778888999999999988999999999999999999999999999999999999999887654 466777
Q ss_pred HHHHHHHHHHHHhhc
Q 016428 213 VSIVPAAILCLAMVF 227 (390)
Q Consensus 213 ~~~~~~~~~~~~~~~ 227 (390)
+.+...++..+..++
T Consensus 456 ~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 456 YFGLGSVVLGIVLVF 470 (491)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-12 Score=113.04 Aligned_cols=153 Identities=15% Similarity=0.101 Sum_probs=112.2
Q ss_pred HHHHHHhhhhcccccccchhhhhhc-cccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHH-HHHHHH
Q 016428 56 ATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP-MIIGAS 133 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~-~~i~~~ 133 (390)
..+..+.............|.+.++ +|.+..+. +++.+...++..++.++.+++.||+|++. ..+... ...+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~ 279 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLL 279 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3333344444444444556666555 78766665 89999999999999999999999999833 223222 222221
Q ss_pred --HHHh--hhhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCchhHH
Q 016428 134 --ISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (390)
Q Consensus 134 --~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~wr~ 209 (390)
.... .++.+.+++.-++.|++.+...+....++.|..| ++|+++.++.+....+|..+++.+.+.+.+..+ |+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~ 357 (375)
T 2gfp_A 280 MWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSL 357 (375)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHH
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccH
Confidence 2222 2467777788899999999999999999999998 889999999999999999999999988877655 677
Q ss_pred HHHHH
Q 016428 210 CFWVS 214 (390)
Q Consensus 210 ~f~~~ 214 (390)
.+.+.
T Consensus 358 ~~~~~ 362 (375)
T 2gfp_A 358 GLLMT 362 (375)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=101.45 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=101.2
Q ss_pred HHHHHHhHHHHHHHHHhHHHhh----chhhh----HHHHHHhHHHHHHHHHHHHhh---------hhHHHHHHHHHHHhh
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIA----DGVGR----RRAFQLCALPMIIGASISATT---------RNLIGMLLGRFVVGT 153 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~----d~~Gr----r~~l~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~ 153 (390)
+++.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++. .+.+.+++.-++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 6777777777777887777764 55543 356677888888887777664 367778888999999
Q ss_pred hccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhcccccccCc-hh---------HHHHHHHHHHHHHHHH
Q 016428 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WW---------RICFWVSIVPAAILCL 223 (390)
Q Consensus 154 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g-~w---------r~~f~~~~~~~~~~~~ 223 (390)
+.+...+....++.|..|+++|++++|+.+....+|..+++.+.+.+.+..+ .| +..|++.+...++..+
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI 497 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876421 13 3336665555555544
Q ss_pred Hhhc
Q 016428 224 AMVF 227 (390)
Q Consensus 224 ~~~~ 227 (390)
..++
T Consensus 498 ~~~~ 501 (524)
T 2xut_A 498 VFAL 501 (524)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 4433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 390 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-09 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 5e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 57.4 bits (137), Expect = 1e-09
Identities = 43/354 (12%), Positives = 101/354 (28%), Gaps = 17/354 (4%)
Query: 40 ENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLG 99
+P+++ + + + Y + ++ GF+ L G +S
Sbjct: 13 AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISI 70
Query: 100 GAFIGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGM 155
+ G ++D R L A M+ + T ++ M + F+ G
Sbjct: 71 AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ 130
Query: 156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215
G+G + RG + A +G L+ + W ++
Sbjct: 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190
Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
A ++ L E + ++ + A+
Sbjct: 191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ----------- 239
Query: 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANL 335
+ + +L + + I + L + ++ + V A S A A +
Sbjct: 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 299
Query: 336 LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGL 389
G+++ + DK+ R F M + + + + + +
Sbjct: 300 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 353
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 45.9 bits (107), Expect = 5e-06
Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 5/201 (2%)
Query: 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
+ + L F + + +G P I L + + G++ + + + L G
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65
Query: 111 IADGVGRRRAFQLCALPMIIGASISA----TTRNLIGMLLGRFVVGTGMGLGPTVAALYV 166
++D +G R+ M++ + +L+G V G +G A V
Sbjct: 66 LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125
Query: 167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226
R + F + + +L I + FW+ A IL + +
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185
Query: 227 FCAESPHWLYKKGRTAEAEAE 247
F A
Sbjct: 186 FAKTDAPSSATVANAVGANHS 206
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 390 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.64 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.44 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-33 Score=254.82 Aligned_cols=297 Identities=12% Similarity=0.023 Sum_probs=221.2
Q ss_pred chhhhHHHHHHHHHHHhhhhcccccccchhhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhH
Q 016428 46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA 125 (390)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~ 125 (390)
++.+|..+..++++++..+++...++...|.+. |+|++.++. |++.+++.+++.++++++|+++||+|||+++..+.
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 96 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 345688888888888888888888888888775 579998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh----hhHHHHHHHHHHHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHhccccc
Q 016428 126 LPMIIGASISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (390)
Q Consensus 126 ~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 201 (390)
++.+++.++++++ ++++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+..+|..+++.+++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 9999999998876 477899999999999999999999999999999999999999999999999999999888777
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHh-hcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhh
Q 016428 202 EIAGWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEE 280 (390)
Q Consensus 202 ~~~g~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (390)
...++||+.|++.++..++..+.. ++.+|+|+........+..++ ......+..+++........+.
T Consensus 177 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 244 (447)
T d1pw4a_ 177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND------------YPDDYNEKAEQELTAKQIFMQY 244 (447)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------------------CCTHHHHHH
T ss_pred hhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhh------------cccchhhccccccchhhHHHHH
Confidence 665459999998777776665544 445665543211111110000 0000001111222233344566
Q ss_pred hhcccchhHHHHHHHHHHHHHhhchhhHHHhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q 016428 281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS 357 (390)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 357 (390)
.++++.++......++..........+.+.|+.+..+.+....+.......++.+++.++.|++.||.+|++.....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 321 (447)
T d1pw4a_ 245 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321 (447)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence 77778887777777766666555555555555444333334456678888899999999999999999886644433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=2.4e-22 Score=180.02 Aligned_cols=293 Identities=14% Similarity=0.021 Sum_probs=186.0
Q ss_pred HHHHHHHHhhhhcccccccchhh-hhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHH
Q 016428 54 LVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (390)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~ 132 (390)
..+.+..+...+......+.+|. +.+++|.+.++. |++.+++.++..++++++|+++||+|||++++.+..+..++.
T Consensus 10 ~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~ 87 (417)
T d1pv7a_ 10 WMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMF 87 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34445556666666666777776 567789988777 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHH----HHHHHHHhhhccchhhhHHHHHhhcCCC--ccchhHHHHHHHHHHHHHHHHHHhcccccccCch
Q 016428 133 SISATTRNLIGM----LLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (390)
Q Consensus 133 ~~~~~~~~~~~l----~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~g~ 206 (390)
.+..+..+.... ++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 166 (417)
T d1pv7a_ 88 APFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN- 166 (417)
T ss_dssp HHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccc-
Confidence 888887765544 3455555555555544444444433332 345566777788888899999999998887653
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCChhhHHhcCCHHHHHHHHHHHhCCCCchhHHHHhhhcccCCCCccchhhhhhcccc
Q 016428 207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH 286 (390)
Q Consensus 207 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (390)
|+..+.......+...+..+..+|+|+. .+.++.+ .++.++.......+..+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 221 (417)
T d1pv7a_ 167 QFVFWLGSGCALILAVLLFFAKTDAPSS----ATVANAV---------------------GANHSAFSLKLALELFRQPK 221 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCSS----SCSSHHH---------------------HSCCCCCCHHHHHHHTTSSH
T ss_pred cccccchhhHHHHHHHHHHHHhcccccc----hhhhhhh---------------------hhhccccccccccccccccc
Confidence 4444444445455555555666766531 1111100 01111222223334444444
Q ss_pred hhHHHHHHHHHHHHHhhchhhHHHhHHHHHh---hcCCCchHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q 016428 287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFK---SAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 363 (390)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 363 (390)
.+......................+...... ......+.......++..++..+.+++.||.++|+.+.++..+.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~ 301 (417)
T d1pv7a_ 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHH
Confidence 4444443333333322222222222211111 1111233456667788888999999999999999999999998888
Q ss_pred HHHHHHHhccc
Q 016428 364 SMAIQVAASSS 374 (390)
Q Consensus 364 ~~~~~~~~~~~ 374 (390)
+.+++.+.++.
T Consensus 302 ~~~~~~~~~~~ 312 (417)
T d1pv7a_ 302 RIIGSSFATSA 312 (417)
T ss_dssp HHHHHHTCCCH
T ss_pred hhhcccccccc
Confidence 88777665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.8e-16 Score=141.17 Aligned_cols=136 Identities=15% Similarity=0.025 Sum_probs=123.1
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccchhhhHHHHHhhcC
Q 016428 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170 (390)
Q Consensus 91 g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 170 (390)
+...+...++..++..+.+++.||+|+|+.+..+.++.+++.+...+.++.+.+++..++.|++.+...+....++.|.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 341 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 67788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhHHHHH-HHHHHHHHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhc
Q 016428 171 PPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227 (390)
Q Consensus 171 ~~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~ 227 (390)
|+++|+++.++. +....+|..++|.+.+.+.+..| |++.|++.+++.++..++.++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 56778999999999999999888 899998877777666555444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=1.2e-13 Score=124.39 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=114.4
Q ss_pred hhhhhccccCCcchhhHHHHHHhHHHHHHHHHhHHHhhchhhhHHHHHHhHHHHHHHHH---HHH--hhhhHHHHHHHHH
Q 016428 75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISA--TTRNLIGMLLGRF 149 (390)
Q Consensus 75 ~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~i~~~---~~~--~~~~~~~l~~~r~ 149 (390)
..+.+.++.+..+. ++..+.+.++..++.++.|+++||++||+..........+... ... ...+.+..+++-+
T Consensus 274 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
T d1pw4a_ 274 TYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 351 (447)
T ss_dssp HHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcccccccccchh--hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34556677776666 8999999999999999999999999987544433333222222 222 2356777888888
Q ss_pred HHhhhccchhhhHHHHHhhcCCCccchhHHHHHHHHHHH-HHHHHHHhcccccccCchhHHHHHHHHHHHHHHHHHhhc
Q 016428 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227 (390)
Q Consensus 150 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~g~wr~~f~~~~~~~~~~~~~~~~ 227 (390)
+.|++.+...+....+..|.+|++.|+++.|+.+....+ |.+++|.+.+.+.+..| |+..|++.+...++..++.++
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888889999999999999999999877665 57788999999999888 899888766666655544433
|